HHsearch alignment for GI: 254780217 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.94 E-value=2.9e-26 Score=231.10 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=143.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 66555587565610929999999999982-----8898166311798988899999999998177998864312101267
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCS-----GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~-----~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 14 ~~~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s---------- 82 (234)
T pfam05496 14 VERSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITS---------- 82 (234)
T ss_pred HHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEC----------
T ss_conf 785549897666069499999999999988742777662-788789999888999999984087537614----------
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
T Consensus 83 ----------~--~---~i-----~---------~~~di~~~l~~------~~~~~ILFIDEIHr~nK~qqd~Llp~vE~ 127 (234)
T pfam05496 83 ----------G--P---AL-----E---------KPGDLAAILTN------LEPGDVLFIDEIHRLNRAVEEILYPAMED 127 (234)
T ss_pred ----------C--H---HH-----H---------HHHHHHHHHHH------CCCCCEEEEECHHHCCHHHHHHCCCCCCC
T ss_conf ----------2--6---66-----4---------38999999984------58998899966543587688744553346
Q ss_pred ----------CCCCC--------CEEEEECCCCCCCHHHHCEEE-EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHH
Q ss_conf ----------03434--------167650443357302520369-886479998999999997----2788896789999
Q gi|254780217|r 157 ----------PPQKV--------LFILISHASPTILSTIRSRCL-SIKFNSLSENNLYKALEQ----LKIMGWDSKRDFV 213 (347)
Q Consensus 157 ----------Pp~~t--------~fiLit~~~~~il~TI~SRc~-~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~ 213 (347)
T Consensus 128 g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~I 207 (234)
T pfam05496 128 FRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEI 207 (234)
T ss_pred CEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 16999963676632465268975998521566647777997621124424689999999999999983999599999999
Q ss_pred HHHCCCCHHHHHHHHCC
Q ss_conf 99759897899988145
Q gi|254780217|r 214 KIAAYGSVARAIKILHY 230 (347)
Q Consensus 214 ~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 208 A~~s~Gd~R~ALnlLe~ 224 (234)
T pfam05496 208 ARRSRGTPRIANRLLRR 224 (234)
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 99779989999899999