HHsearch alignment for GI: 254780217 and conserved domain: pfam06144
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=98.17 E-value=2.8e-05 Score=62.18 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=109.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
T Consensus 1 Yll~G~e~~l~~~~~~~i~~~~~~~~~------------------------~~~n~~~~d----------~~~~~~~~-- 44 (172)
T pfam06144 1 YLLYGEDPFLLEETKDQILKAALDQGF------------------------EDFNYIYFD----------LEEDWADD-- 44 (172)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCC------------------------CEEEEEEEC----------CCCCCHHH--
T ss_conf 979728599999999999999737997------------------------303689862----------77666999--
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHH----CCHHHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHCEEEEEECCC
Q ss_conf 5443102221111210353220554----2400014567776630343416765044----3357302520369886479
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDG----MNRNAANALLKSLEEPPQKVLFILISHA----SPTILSTIRSRCLSIKFNS 188 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~----ln~~AaNALLK~LEEPp~~t~fiLit~~----~~~il~TI~SRc~~i~f~~ 188 (347)
T Consensus 45 -i~~~~~t~slF~~~rlvii~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k~~~~i~~~~ 123 (172)
T pfam06144 45 -VLEECETLPFFSDKRIVILNNPNLKESKLNEKLLKRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKKKATVVECFT 123 (172)
T ss_pred -HHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf -9999728998889769999776424455539999999999836998728999836741367888999983766999348
Q ss_pred CCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 998999999997----278889678999999759897899988
Q gi|254780217|r 189 LSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 189 l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
T Consensus 124 ~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~E 166 (172)
T pfam06144 124 LKEEELIQWIQKRAKELGLKIEKDALQLLAEKVENNLLAIAQE 166 (172)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 9878999999999998499989999999999978489999999