HHsearch alignment for GI: 254780217 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.13 E-value=4.8e-06 Score=68.31 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=49.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC-CEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 631179898889999999999817799886431210126788679999678987-5453001000101342123237887
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp-d~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
T Consensus 2 vll~Gp~G~GKT~la~~la~~l-~~~-----~~~~i~----------~~~~~~~~dl~G-~~~~~~~~~~~-----~~-- 57 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAAL-SNR-----PVFYVQ----------LTRDTTEEDLKG-RRNIANGTTSW-----VD-- 57 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHC-CCC-----CCHHHC----------CCCCCCHHHCCC-CEECCCCCEEE-----EC--
T ss_conf 8999899756999999999980-798-----311121----------465565222057-34237993578-----15--
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 55443102221111210353220554240001456777663
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
T Consensus 58 ----g~l~~-a~~-~g~vl~lDEin~a~~~v~~~L~~~le~ 92 (139)
T pfam07728 58 ----GPLVR-AAR-EGEIAVLDEINRANPDVLNSLLSLLDE 92 (139)
T ss_pred ----CHHHC-CCC-CCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf ----51410-101-286899634344899999999999748