HHsearch alignment for GI: 254780217 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.17 E-value=0.012 Score=41.03 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 756561092999999999998288-----981663117989888999999999981779988643121012678867999
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
T Consensus 55 ~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y---~~Y~i~gsP---------- 121 (358)
T pfam08298 55 PAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELV---PIYALKGSP---------- 121 (358)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCC----------
T ss_conf 5423200159999999999999972367210589997789877589999999872058---648844897----------
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 967898754530010001013421232378875544-3102221111210353220554240001456777663034341
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~-~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~ 162 (347)
T Consensus 122 --m~e~PL~-L~---------------~p~~~r~~le~~~gi~~----~~---i~--g~l~P~~----~~rL~e~~Gd~~ 170 (358)
T pfam08298 122 --VFESPLH-LF---------------NPHHLRDILEDEYGIPR----RR---LE--GDLSPWC----TKRLEEFGGDIE 170 (358)
T ss_pred --CCCCCCC-CC---------------CHHHHHHHHHHHHCCCH----HH---CC--CCCCHHH----HHHHHHHCCCHH
T ss_conf --7789854-77---------------86775999998749952----12---08--9889899----999999389855
Q ss_pred EEEEECCCCCCCHHHHCEEEEEECCCC--CHHHHHHHHH
Q ss_conf 676504433573025203698864799--9899999999
Q gi|254780217|r 163 FILISHASPTILSTIRSRCLSIKFNSL--SENNLYKALE 199 (347)
Q Consensus 163 fiLit~~~~~il~TI~SRc~~i~f~~l--~~~~~~~~L~ 199 (347)
T Consensus 171 ~----~~V~r~~~S~~~r~gi~t~~P~D~~nqD~s~L~G 205 (358)
T pfam08298 171 K----FKVVKIFPSILRQIGIAKTEPGDENNQDISALVG 205 (358)
T ss_pred H----EEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 2----7899955560045689996899987633778743