HHsearch alignment for GI: 254780217 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0057 Score=43.60 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCCCCCCHH-HHCCHHHHHHHHHHHHHC----CC-CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 555587565-610929999999999982----88-9816631179898889999999999817
Q gi|254780217|r 4 RAFDPVYNQ-RLFGHEDIEKFLSQYYCS----GR-MHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 4 ~~~~p~~~~-~i~G~~~~~~~L~~~~~~----~~-l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
T Consensus 42 ~i~ry~~F~d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ 104 (361)
T smart00763 42 GIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 078550110131164899999999999998446712569999889988779999999999998