BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] (347 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] gi|254039894|gb|ACT56690.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ Sbjct: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY Sbjct: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR Sbjct: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI Sbjct: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ Sbjct: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI Sbjct: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 >gi|315122340|ref|YP_004062829.1| DNA polymerase III subunit delta' [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495742|gb|ADR52341.1| DNA polymerase III subunit delta' [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 347 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/347 (73%), Positives = 296/347 (85%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 MID DP+YN++LFGHE+IE+FLSQYY SG+MHHA LFEGE+GIGKATLGF YA HVLQ Sbjct: 1 MIDGILDPIYNRKLFGHEEIEEFLSQYYSSGKMHHAFLFEGEEGIGKATLGFHYARHVLQ 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPDF AP +MC+PDP SPFVKQMAS ALH+FLYLSY LN KTGK RTVITVDEIRRIR+ Sbjct: 61 NPDFRNAPSQMCSPDPNSPFVKQMASRALHNFLYLSYPLNVKTGKLRTVITVDEIRRIRH 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 FLSLTA+ GYWRVI+IDPVDGMN NAANALLKSLEEPP+KV+FILISHAS IL TIRSR Sbjct: 121 FLSLTADKGYWRVIIIDPVDGMNNNAANALLKSLEEPPKKVVFILISHASRVILPTIRSR 180 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLS+KF +LSE NLYKALE LKI+ SK D + IA+YGSV+RAIKIL+Y CDKII+SYI Sbjct: 181 CLSVKFKTLSEKNLYKALENLKIVDLHSKIDLINIASYGSVSRAIKILNYGCDKIIASYI 240 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 DL+H ++ L KMQQI+DEL QD+KIAFDF +EFI+KE+ K AK AALSG+LEEADQ Sbjct: 241 DLMHAQEEKSLLYKMQQISDELSPQDKKIAFDFFVEFIMKEMFKGAKEAALSGKLEEADQ 300 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I QIY S+ K+V +F +YNLDRRQ+IF+LL KAR+CN +Y R FYAI Sbjct: 301 IVQIYSSVKKKVDSFYIYNLDRRQIIFYLLEKARDCNIIYERIFYAI 347 >gi|86357777|ref|YP_469669.1| DNA polymerase III subunit delta' [Rhizobium etli CFN 42] gi|86281879|gb|ABC90942.1| DNA polymerase III delta prime subunit protein [Rhizobium etli CFN 42] Length = 341 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 149/335 (44%), Positives = 218/335 (65%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFASHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPNTAPEAIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K + LS+ L AL L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLSPLSDEALVAALGHLGISG---EGGAVLAAAKGSVGEALKLLNYGGGEIIAAY- 243 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D + A + M ++AD L ++ FDF + + +I A+AAA G++ A++ Sbjct: 244 DEVLTTEGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARAAAGDGEIATAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 304 LARLYSEITERLAVSSAYNLDRKQTVISILADIKQ 338 >gi|222086012|ref|YP_002544544.1| DNA polymerase III delta prime subunit protein [Agrobacterium radiobacter K84] gi|221723460|gb|ACM26616.1| DNA polymerase III delta prime subunit protein [Agrobacterium radiobacter K84] Length = 345 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 149/335 (44%), Positives = 217/335 (64%), Gaps = 1/335 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHED E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 VLDGAIPPQDNTRLFGHEDAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q++ A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPATAPETISDPDPASAVSRQISGGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WRV++IDP D +NRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRVVIIDPADDLNRNAANAILKILEEPPKRALFLVLSHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K LS+N L AL L I + + AA GSV A+K+L+Y +I+++Y Sbjct: 188 CLPLKLAPLSDNALSNALGHLGIGLSAGQGSELLAAAKGSVNEALKLLNYGGGEIVAAYE 247 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +I A + M ++AD L +++ + F F + I +I A+AAAL G L A++ Sbjct: 248 QVISA-EGPAARRAMHRLADALSAKESETIFGFFVSHIGDDIMARARAAALEGHLTVAEK 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +L + ++ Sbjct: 307 LARLYSDVTERLTVSQAYNLDRKQTIITVLGELKQ 341 >gi|327193415|gb|EGE60314.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CNPAF512] Length = 341 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 219/335 (65%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPQTAPETIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K + LS+ L AL+ L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLSPLSDEALAAALDHLGITG---EGGAVLAAAKGSVGEALKLLNYGGGEIIAAYD 244 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ + A + M ++AD L ++ FDF + + +I A+ AA G++ A++ Sbjct: 245 EVLSA-QGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARMAAGEGKIATAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 304 LARLYSEITERLAISSAYNLDRKQTVISILADIKQ 338 >gi|241204715|ref|YP_002975811.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858605|gb|ACS56272.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 341 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 215/335 (64%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N R+FGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPGENTRMFGHAEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + +PDP SP +Q+AS A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPQTAPETIGDPDPASPVSRQIASGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K L+++ L AL L I G V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLAPLADDELVAALTHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAY- 243 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D + A + M ++AD L ++ FDF + + +I A+ AA G++ A++ Sbjct: 244 DEMFAAEGPTARKAMHRLADALSGRESDTIFDFFVSHVGDDIMNRARVAAGEGRIATAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 304 LARLYSEITERLTISDGYNLDRKQTIISILADIKQ 338 >gi|218463773|ref|ZP_03503864.1| DNA polymerase III subunit delta' [Rhizobium etli Kim 5] Length = 341 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 148/335 (44%), Positives = 216/335 (64%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 PD AP + +P P S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 YPDPETAPETIGDPHPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVMSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K + LS++ L AL+ L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLSPLSDDALAAALDHLGISG---EGGAVLAAAKGSVGEALKLLNYGGGEIIAAYG 244 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ A + M ++AD L ++ FDF + + +I A+ AA GQ+ A++ Sbjct: 245 EVLSA-EGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGEGQIAAAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +LS ++ Sbjct: 304 LARLYSEITERLTISDAYNLDRKQTIISILSDIKQ 338 >gi|190891836|ref|YP_001978378.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CIAT 652] gi|190697115|gb|ACE91200.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CIAT 652] Length = 341 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 218/335 (65%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N LFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPAENTMLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPQTAPEAIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K + LS+ L AL+ L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLSPLSDEALAAALDHLGITG---EGGAVLAAAKGSVGEALKLLNYGGGEIIAAYD 244 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ + A + M ++AD L ++ FDF + + +I A+ AA G++ A++ Sbjct: 245 EVLSA-QGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGKGEIATAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 304 LARLYSDITERLAISSAYNLDRKQTVISILADIKQ 338 >gi|116252222|ref|YP_768060.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. viciae 3841] gi|115256870|emb|CAK07964.1| putative DNA polymerase III, delta' subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 341 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 216/335 (64%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPGENTRLFGHAEAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + +PD S +Q+AS A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPETAPETIGDPDLASSVSRQIASGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K L+++ L AL L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLAPLADDELVAALAHLGISG---EGGAVLSAAKGSVGEALKLLNYGGGEIIAAYD 244 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ A + M ++AD L ++ FDF + + +I A+AAA GQ+ A++ Sbjct: 245 EML-AAEGPTARKAMHRLADALSGRESDTIFDFFVSHVGDDIMNRARAAAGEGQIAAAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 304 LARLYSEITERLTISDGYNLDRKQTIISILADIKQ 338 >gi|209549398|ref|YP_002281315.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535154|gb|ACI55089.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 341 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 217/335 (64%), Gaps = 4/335 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ + FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPGENTRLFGHEEAQAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 PD + AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 YPDPATAPETIGDPDPASSVSRQINSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K L+++ L AL L I G + V AA GSV A+K+L+Y +II++Y Sbjct: 188 CLPLKLAPLADDALMAALAHLGISG---EGGAVLSAAKGSVGEALKLLNYGGGEIIAAYD 244 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ A + M ++AD L ++ FDF + + +I A+AAA GQ+ A++ Sbjct: 245 EMLSA-EGPTARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARAAAGEGQIAAAER 303 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 304 LARLYSEITERLTISDAYNLDRKQTIIGILADIKQ 338 >gi|15965356|ref|NP_385709.1| DNA polymerase III subunit delta' [Sinorhizobium meliloti 1021] gi|307312731|ref|ZP_07592362.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C] gi|307317215|ref|ZP_07596656.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83] gi|15074536|emb|CAC46182.1| Putative DNA polymerase III, delta' subunit [Sinorhizobium meliloti 1021] gi|306897303|gb|EFN28048.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83] gi|306899456|gb|EFN30088.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C] Length = 343 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 217/338 (64%), Gaps = 5/338 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N +LFGH++ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A H+L Sbjct: 8 VLEGALAPATNSKLFGHQEAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHILS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP R+ +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPDPADAPERLADPDPASMVTRQLASGASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ LF++++HA +L TIRSR Sbjct: 128 FFGQTSGTGNWRIVIIDPADDLNRNAANAILKMLEEPPRRSLFLVLTHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLK--IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 CL ++ L L +AL L + G D++R V AA GSV+ A+K+++Y I + Sbjct: 188 CLPLRLKPLDTQALRQALAHLGLDLAGPDAER--VLAAASGSVSEALKLINYGGLDIAGA 245 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + D++ + A + M ++AD L +D + FDF + I + A+ AA++G + A Sbjct: 246 FDDIL-AGQGPAARKNMHKLADVLSGKDSETIFDFFSSLLSGRIMQLAREAAIAGDVGRA 304 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ A++ S+ +R+ + YNLDR+Q I LL ++ Sbjct: 305 ERFARLSSSVGERLAVSNAYNLDRKQTILSLLDDLKDA 342 >gi|150396509|ref|YP_001326976.1| DNA polymerase III subunit delta' [Sinorhizobium medicae WSM419] gi|150028024|gb|ABR60141.1| putative DNA polymerase III, delta' subunit protein [Sinorhizobium medicae WSM419] Length = 343 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/338 (40%), Positives = 217/338 (64%), Gaps = 5/338 (1%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N RLFGH++ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A H+L Sbjct: 8 VLEGALAPAMNSRLFGHQEAEAFLAQSYKSGKGHHAILIEGPEGIGKATLAFRFANHILS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ ++AP R+ +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPEPAEAPSRLADPDPESIITRQLASAASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR++++DP D +NRNAANA+LK LEEPP + LF++++HA +L T+RSR Sbjct: 128 FFGQTSGTGNWRIVIVDPADDLNRNAANAILKMLEEPPPRSLFLVLTHAPGRLLPTVRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKI--MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 CL ++ L +L +AL L + G ++ R V AA GSV+ A+K+++Y I + Sbjct: 188 CLPLRLKPLETADLRQALTHLGVDLAGPNAGR--VLAAASGSVSEALKLVNYGGLDIAEA 245 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + D++ + + + M ++AD L +D + FDF + I + A+ AA++G + A Sbjct: 246 FEDIL-AGQGPGSRKSMHKLADVLSGRDSETIFDFFSSLLAGRIMQLAREAAIAGDVGRA 304 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ A++ S+ +R+ S YNLDR+Q I LL +E Sbjct: 305 ERFARLSSSVGERLALSSAYNLDRKQTILSLLDDLKEA 342 >gi|159184783|ref|NP_354503.2| DNA polymerase III subunit delta' [Agrobacterium tumefaciens str. C58] gi|159140071|gb|AAK87288.2| DNA polymerase III, delta prime subunit [Agrobacterium tumefaciens str. C58] Length = 341 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 224/336 (66%), Gaps = 1/336 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 7 VLDGAIAPQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLT 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q+ + A H+ L+L+ ++ KTG+ ++ ITVDE+RR + Sbjct: 67 HPDPASAPDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGH 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ +F+++SHA +L TIRSR Sbjct: 127 FFSQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSR 186 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C+ ++ LS+ + +AL+QL I KRD + A+ GSVA+A+K+++Y I+ ++ Sbjct: 187 CMPLRLLPLSDAAMVQALDQLDISPEGEKRDALLTASKGSVAQALKLMNYGGSDIVEAFA 246 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ A ++M ++A+ L +D I F +E + +E+ + A+AAA++G + A++ Sbjct: 247 EVMSA-EGPGARKRMHKLAEVLAQKDGDIVLGFFMEHVTEELMERARAAAMAGDIAAAEK 305 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A++ +L +R+ YNLD++QM+ +L R Sbjct: 306 HARLSSTLSERITVAQAYNLDKKQMVLSILEDIRSV 341 >gi|325292850|ref|YP_004278714.1| DNA polymerase III, delta prime subunit [Agrobacterium sp. H13-3] gi|325060703|gb|ADY64394.1| DNA polymerase III, delta prime subunit [Agrobacterium sp. H13-3] Length = 341 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 136/334 (40%), Positives = 218/334 (65%), Gaps = 1/334 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N +LFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 7 VLDGAIAPQQNTKLFGHGEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLT 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PD S +Q+ S A H+ L+L+ + KTG+ ++ ITVDE+RR + Sbjct: 67 HPDPATAPDFLADPDTESLVSRQITSGASHNLLHLTRPADEKTGRVKSAITVDEVRRAGH 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ +F+++SHA +L TIRSR Sbjct: 127 FFSQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSR 186 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C+ ++ LS+ ++ ++L+ L I KRD + A+ GSVA+A+K+++Y I+ + Sbjct: 187 CMPLRLLPLSDADMVQSLDHLGISPAGEKRDALLSASKGSVAQALKLMNYGGSDIVEALA 246 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 ++ A ++M ++A+ L +D I F +E + +E+ A+AAA++G + A++ Sbjct: 247 SVM-TAEGPGARKQMHKLAEVLAQKDGDIVLGFFMEHVTEELMARARAAAMAGDISAAEK 305 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 A++ +L +R+ YNLD++QM+ +L R Sbjct: 306 HARLSSTLSERITVAQAYNLDKKQMVLSILEDVR 339 >gi|227822154|ref|YP_002826125.1| DNA polymerase III subunit delta' [Sinorhizobium fredii NGR234] gi|227341154|gb|ACP25372.1| DNA polymerase III, delta prime subunit [Sinorhizobium fredii NGR234] Length = 343 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 135/337 (40%), Positives = 213/337 (63%), Gaps = 3/337 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A PV N +LFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 VLEGAVAPVENSKLFGHREAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ ++AP + +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPEPAEAPEHLGDPDPASLVTRQLASGASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ LF++++HA +L TIRSR Sbjct: 128 FFGQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPRRSLFLVLTHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL ++ L + AL L + + AA GSV+ A+K+++Y I +++ Sbjct: 188 CLPLRLKPLEPEPMRLALAHLGFDLTGPNAEGIIAAASGSVSEALKLINYGGLDIAAAFE 247 Query: 241 DLIHIPRQEYALQK-MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 D++ Q A++K + ++AD L ++D + +DF + + + A+ AA++G + A+ Sbjct: 248 DVLA--GQGPAVRKQVHKLADILSAKDSETIYDFFSSLFMGRVMRLAREAAIAGDIGRAE 305 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + A + SL +R+ YNLDR+Q I LL ++ Sbjct: 306 RFATLSGSLTERLTLSEAYNLDRKQTILSLLDDLKDA 342 >gi|222148590|ref|YP_002549547.1| DNA polymerase III subunit delta' [Agrobacterium vitis S4] gi|221735576|gb|ACM36539.1| DNA polymerase III delta prime subunit [Agrobacterium vitis S4] Length = 346 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 219/332 (65%), Gaps = 1/332 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N R+FGH E+FL+ Y SG++HHA+L EG +GIGKATL FR+A HVL Sbjct: 12 LLDGAIAPFANDRMFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLS 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q+AS A H+ L+++ ++ KTG+ ++ ITV+EIR+ + Sbjct: 72 HPDPASAPFVIADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEIRKAGH 131 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ G WR++++DP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 132 FFSQTSGGGNWRIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSR 191 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C+ +K +L ++L AL L + + + + GSV++A+K+++Y +II+++ Sbjct: 192 CMPLKLQTLGVDDLASALAHLGVSPPVEQMAALSDLSKGSVSQALKLINYGGMEIIAAF- 250 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 + I A ++M ++AD L ++D + + F IE + + + +A+ A++G L A++ Sbjct: 251 NAILASEGPAARKQMHKLADALSAKDSDVIYHFFIEHLSEFLMDNARQVAMAGDLARAER 310 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 ++++ ++++++ YNLDR+Q + +L + Sbjct: 311 LSRLSSAIIEKLGVAGAYNLDRKQTLLEILGE 342 >gi|163760147|ref|ZP_02167230.1| DNA polymerase III subunit delta' [Hoeflea phototrophica DFL-43] gi|162282546|gb|EDQ32834.1| DNA polymerase III subunit delta' [Hoeflea phototrophica DFL-43] Length = 339 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 138/343 (40%), Positives = 213/343 (62%), Gaps = 12/343 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N LFGH+ + FL+ Y SGRMHHA+L EG QG+GKATL +R+A H+L Sbjct: 8 VLEGAIPPGENTVLFGHDAAQSFLANAYRSGRMHHAILIEGPQGVGKATLAYRFARHMLA 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + + P P +Q+AS A H+ L+L+ ++ KTGK ++VITVDE+R+ Sbjct: 68 HPDPLSAPEMIADSGPDDPLTRQIASGASHNLLHLARPVDEKTGKVKSVITVDEVRKAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+ +IDP D +NRNAANALLK LEEPP++ LF+++SH +L TIRSR Sbjct: 128 FFGQTSGTGNWRIAIIDPADDLNRNAANALLKILEEPPKRSLFLVLSHTPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLS++ LS +L AL L ++ D + + GSVARA+ + +Y +I +++ Sbjct: 188 CLSLRLQPLSAPDLDLALGHLGAAPGEA--DAIIRLSEGSVARALLLRNYGGAEIAEAFV 245 Query: 241 DLIHIPRQEYA-LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 D+I R A + + ++A+ L ++D+ +A+ F E ++ I A+ A +G L EAD Sbjct: 246 DIIE--RGSLANREPIHKLAETLSARDRDVAYQFFTELVIDRIQAMARDAGAAGDLNEAD 303 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 ++A++ L + + YNLDR+Q + H+ + L+FR Sbjct: 304 RLARLSVELAEHFATAAAYNLDRKQTVLHVFT-------LFFR 339 >gi|254719071|ref|ZP_05180882.1| DNA polymerase III subunit delta' [Brucella sp. 83/13] gi|265984062|ref|ZP_06096797.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306838353|ref|ZP_07471198.1| DNA polymerase III, delta'' subunit [Brucella sp. NF 2653] gi|264662654|gb|EEZ32915.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306406493|gb|EFM62727.1| DNA polymerase III, delta'' subunit [Brucella sp. NF 2653] Length = 360 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/328 (43%), Positives = 194/328 (59%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAKARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + LV+ YNLDRRQ + LL K Sbjct: 318 WSDLVRETVEAETYNLDRRQAVVILLEK 345 >gi|256113540|ref|ZP_05454366.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 3 str. Ether] gi|265994913|ref|ZP_06107470.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|262766026|gb|EEZ11815.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] Length = 360 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 196/334 (58%), Gaps = 5/334 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L Sbjct: 14 IEGVPGPSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSF 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D ++AP + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +F Sbjct: 74 GDRNEAPETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ TA+ WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC Sbjct: 134 LTRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISS 238 SI F L L +AL S D ++ + GSV R +L IS Sbjct: 194 QSISFKPLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISE 252 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +D I I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EA Sbjct: 253 TVDQI-IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARCYADSGQLREA 311 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 DQ A+ + L++ YNLDRRQ + LL K Sbjct: 312 DQWARFWSDLIRETVEAETYNLDRRQAVVILLEK 345 >gi|17987271|ref|NP_539905.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 1 str. 16M] gi|23501874|ref|NP_698001.1| DNA polymerase III subunit delta' [Brucella suis 1330] gi|148560622|ref|YP_001258935.1| DNA polymerase III subunit delta' [Brucella ovis ATCC 25840] gi|161618947|ref|YP_001592834.1| DNA polymerase III subunit delta' [Brucella canis ATCC 23365] gi|163843262|ref|YP_001627666.1| DNA polymerase III subunit delta' [Brucella suis ATCC 23445] gi|225627471|ref|ZP_03785508.1| DNA polymerase III, delta'' subunit [Brucella ceti str. Cudo] gi|225852498|ref|YP_002732731.1| DNA polymerase III subunit delta' [Brucella melitensis ATCC 23457] gi|254689224|ref|ZP_05152478.1| DNA polymerase III subunit delta' [Brucella abortus bv. 6 str. 870] gi|254693709|ref|ZP_05155537.1| DNA polymerase III subunit delta' [Brucella abortus bv. 3 str. Tulya] gi|254701745|ref|ZP_05163573.1| DNA polymerase III subunit delta' [Brucella suis bv. 5 str. 513] gi|254704287|ref|ZP_05166115.1| DNA polymerase III subunit delta' [Brucella suis bv. 3 str. 686] gi|254706811|ref|ZP_05168639.1| DNA polymerase III subunit delta' [Brucella pinnipedialis M163/99/10] gi|254710079|ref|ZP_05171890.1| DNA polymerase III subunit delta' [Brucella pinnipedialis B2/94] gi|254714080|ref|ZP_05175891.1| DNA polymerase III subunit delta' [Brucella ceti M644/93/1] gi|254716863|ref|ZP_05178674.1| DNA polymerase III subunit delta' [Brucella ceti M13/05/1] gi|256044654|ref|ZP_05447558.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 1 str. Rev.1] gi|256061086|ref|ZP_05451241.1| DNA polymerase III subunit delta' [Brucella neotomae 5K33] gi|256159713|ref|ZP_05457460.1| DNA polymerase III subunit delta' [Brucella ceti M490/95/1] gi|256254975|ref|ZP_05460511.1| DNA polymerase III subunit delta' [Brucella ceti B1/94] gi|256257474|ref|ZP_05463010.1| DNA polymerase III subunit delta' [Brucella abortus bv. 9 str. C68] gi|256264011|ref|ZP_05466543.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|256369415|ref|YP_003106923.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|260168706|ref|ZP_05755517.1| DNA polymerase III subunit delta' [Brucella sp. F5/99] gi|260564000|ref|ZP_05834486.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|260566466|ref|ZP_05836936.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260754729|ref|ZP_05867077.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260883750|ref|ZP_05895364.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|261213981|ref|ZP_05928262.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|261218665|ref|ZP_05932946.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261222161|ref|ZP_05936442.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261314278|ref|ZP_05953475.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261317628|ref|ZP_05956825.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261321837|ref|ZP_05961034.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|261325088|ref|ZP_05964285.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261752298|ref|ZP_05996007.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261754955|ref|ZP_05998664.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|261758183|ref|ZP_06001892.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|265991078|ref|ZP_06103635.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|265998126|ref|ZP_06110683.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|297248319|ref|ZP_06932037.1| DNA polymerase III subunit delta [Brucella abortus bv. 5 str. B3196] gi|17982948|gb|AAL52169.1| DNA polymerase iii, delta' subunit [Brucella melitensis bv. 1 str. 16M] gi|23347813|gb|AAN29916.1| DNA polymerase III, delta prime subunit domain protein [Brucella suis 1330] gi|148371879|gb|ABQ61858.1| DNA polymerase III, delta prime subunit domain protein [Brucella ovis ATCC 25840] gi|161335758|gb|ABX62063.1| DNA polymerase III, delta' subunit [Brucella canis ATCC 23365] gi|163673985|gb|ABY38096.1| DNA polymerase III, delta' subunit [Brucella suis ATCC 23445] gi|225617476|gb|EEH14521.1| DNA polymerase III, delta'' subunit [Brucella ceti str. Cudo] gi|225640863|gb|ACO00777.1| DNA polymerase III, delta' subunit [Brucella melitensis ATCC 23457] gi|255999575|gb|ACU47974.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|260154016|gb|EEW89108.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|260155984|gb|EEW91064.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260674837|gb|EEX61658.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260873278|gb|EEX80347.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260915588|gb|EEX82449.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|260920745|gb|EEX87398.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|260923754|gb|EEX90322.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261294527|gb|EEX98023.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|261296851|gb|EEY00348.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261301068|gb|EEY04565.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261303304|gb|EEY06801.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261738167|gb|EEY26163.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|261742051|gb|EEY29977.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261744708|gb|EEY32634.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|262552594|gb|EEZ08584.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|263001862|gb|EEZ14437.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|263094154|gb|EEZ18076.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|297175488|gb|EFH34835.1| DNA polymerase III subunit delta [Brucella abortus bv. 5 str. B3196] gi|326409014|gb|ADZ66079.1| DNA polymerase III subunit delta' [Brucella melitensis M28] gi|326538724|gb|ADZ86939.1| DNA polymerase III, delta' subunit [Brucella melitensis M5-90] Length = 360 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/328 (42%), Positives = 194/328 (59%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEK 345 >gi|62289917|ref|YP_221710.1| DNA polymerase III subunit delta' [Brucella abortus bv. 1 str. 9-941] gi|82699844|ref|YP_414418.1| DNA polymerase III subunit delta' [Brucella melitensis biovar Abortus 2308] gi|189024160|ref|YP_001934928.1| Replication factor C conserved domain protein [Brucella abortus S19] gi|237815419|ref|ZP_04594417.1| DNA polymerase III, delta' subunit [Brucella abortus str. 2308 A] gi|254697359|ref|ZP_05159187.1| DNA polymerase III subunit delta' [Brucella abortus bv. 2 str. 86/8/59] gi|254730257|ref|ZP_05188835.1| DNA polymerase III subunit delta' [Brucella abortus bv. 4 str. 292] gi|260545334|ref|ZP_05821075.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260757952|ref|ZP_05870300.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260761775|ref|ZP_05874118.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|62196049|gb|AAX74349.1| DNA polymerase III, delta prime subunit domain protein [Brucella abortus bv. 1 str. 9-941] gi|82615945|emb|CAJ10968.1| Replication factor C conserved domain [Brucella melitensis biovar Abortus 2308] gi|189019732|gb|ACD72454.1| Replication factor C conserved domain protein [Brucella abortus S19] gi|237790256|gb|EEP64466.1| DNA polymerase III, delta' subunit [Brucella abortus str. 2308 A] gi|260096741|gb|EEW80616.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260668270|gb|EEX55210.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260672207|gb|EEX59028.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] Length = 360 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/328 (42%), Positives = 194/328 (59%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQSVVILLEK 345 >gi|306840481|ref|ZP_07473240.1| DNA polymerase III, delta'' subunit [Brucella sp. BO2] gi|306289496|gb|EFM60714.1| DNA polymerase III, delta'' subunit [Brucella sp. BO2] Length = 360 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 141/328 (42%), Positives = 193/328 (58%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D + A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNAA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTHTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISASDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEK 345 >gi|294852414|ref|ZP_06793087.1| DNA polymerase III subunit delta [Brucella sp. NVSL 07-0026] gi|294821003|gb|EFG38002.1| DNA polymerase III subunit delta [Brucella sp. NVSL 07-0026] Length = 360 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/328 (42%), Positives = 193/328 (58%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L + L S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRTLSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEK 345 >gi|306843868|ref|ZP_07476463.1| DNA polymerase III, delta'' subunit [Brucella sp. BO1] gi|306275623|gb|EFM57347.1| DNA polymerase III, delta'' subunit [Brucella sp. BO1] Length = 360 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 140/328 (42%), Positives = 192/328 (58%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QG+GKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGVGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP LFILISH+ +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPAHALFILISHSLGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISASDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + LV+ YNLDRRQ + LL K Sbjct: 318 WSDLVRETVEAETYNLDRRQAVVILLEK 345 >gi|256031575|ref|ZP_05445189.1| DNA polymerase III subunit delta' [Brucella pinnipedialis M292/94/1] gi|265988663|ref|ZP_06101220.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|264660860|gb|EEZ31121.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] Length = 360 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/328 (42%), Positives = 193/328 (58%), Gaps = 5/328 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEE P + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEELPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D ++ + GSV R +L IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSV-RKALLLLAHGGLEISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEK 345 >gi|153009408|ref|YP_001370623.1| DNA polymerase III subunit delta' [Ochrobactrum anthropi ATCC 49188] gi|151561296|gb|ABS14794.1| DNA polymerase III, delta prime subunit domain protein [Ochrobactrum anthropi ATCC 49188] Length = 358 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/334 (40%), Positives = 200/334 (59%), Gaps = 5/334 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ +P + + GH +I FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L + Sbjct: 14 IEGVPEPSASDYVAGHREISDFLAQAYREGRMHHALLFEGAQGIGKATLAFHLAGHMLAH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S+AP + PD P +Q+A L+++ + KTGK++T I V+EIRR+ +F Sbjct: 74 GDNSEAPEHIAAPDFARPLWRQIAGGMHPAVLHINRPFDQKTGKFKTGIPVEEIRRVTHF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ TA+ WR++++DP D MNRNAANALLK+LEEPP + LFILISH++ +L TIRSRC Sbjct: 134 LTRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSAGRLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKI---MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SI F L + L AL + M D+ + + GSV +A+ +L + IS Sbjct: 194 QSIGFKPLDDAGLTDALAHVGPGVGMQADAVTQTLLQRSEGSVRKAL-LLVANGGIEISD 252 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +D + + Q + L K Q + L ++ ++ ++ + +L ++ A+ A +GQL +A Sbjct: 253 TVDSL-LEGQNFDLPKAQALGGILNGRESEVQYELFRDHLLGQVAIEARRRAEAGQLRDA 311 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 D+ ++ + LV+ YNLDRRQ + LL K Sbjct: 312 DRWSRFWSDLVRETVDAETYNLDRRQAVVILLEK 345 >gi|239831998|ref|ZP_04680327.1| DNA polymerase III subunit delta' [Ochrobactrum intermedium LMG 3301] gi|239824265|gb|EEQ95833.1| DNA polymerase III subunit delta' [Ochrobactrum intermedium LMG 3301] Length = 358 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 133/334 (39%), Positives = 199/334 (59%), Gaps = 5/334 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ +P + + GH +I FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L + Sbjct: 14 IEGVPEPSASDYVSGHREISDFLAQAYREGRMHHALLFEGAQGIGKATLAFHLAGHMLAH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +AP + PD P +Q+A L+++ + KTGK++T I V+EIRR+ +F Sbjct: 74 GNNGQAPEHITAPDFARPLWRQIAGGMHPAVLHINRPFDQKTGKFKTGIPVEEIRRVTHF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ TA+ WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC Sbjct: 134 LTRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKI-MGWDSKRDFVKI--AAYGSVARAIKILHYDCDKIISS 238 SI F L + L AL + +G ++ R + + GSV +A+ +L + IS Sbjct: 194 QSIGFKPLDDKALTDALSHVGPGVGMEAGRVTQTLLQRSEGSVRKAL-LLVANGGIEISD 252 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +D + + Q + L K Q + L ++ ++ ++ + +L + A+ A +GQL +A Sbjct: 253 TVDTL-LEGQNFDLPKAQALGGILNGRESEVQYELFRDHLLGRVAMEARRRAEAGQLHDA 311 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 D+ ++ + L + YNLDRRQ + LL K Sbjct: 312 DRWSRFWSDLSRETVDAETYNLDRRQAVVILLEK 345 >gi|13470653|ref|NP_102222.1| DNA polymerase III subunit delta' [Mesorhizobium loti MAFF303099] gi|14021395|dbj|BAB48008.1| DNA polymerase III, delta prime subunit [Mesorhizobium loti MAFF303099] Length = 349 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 4/337 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P RL GH + L+ Y SG++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPRLVGHGQAAEMLAAAYRSGKLPHALIFAGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P F +AP R+ NPDP SP +Q+A+ A L+L+ +N KT ++TV+TVDEIRR+ F Sbjct: 74 PAFEQAPERLANPDPASPLFRQIATGAHPGVLHLTRPMNDKTKSFKTVVTVDEIRRVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS+T++ G +RV+++DP D MN NAANALLK+LEEPP + LFILI HA ++L TIRSRC Sbjct: 134 LSMTSHDGSYRVVIVDPADDMNANAANALLKNLEEPPARTLFILIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 I+ L ++L LE + D + A GS AI + Y +I + Sbjct: 194 QVIRLTPLDADDLLAVLETAEPPPPDDPAARAALVERAGGSARNAILLTQYGGLEIAGTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L + + + + ++A+ + +DQ I FD L + +A AALSG L A Sbjct: 254 DAL--VAKGKSDIGGAYRLAEAVAGRDQTIQFDIFNRRALDLLSDAASQAALSGDLARAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ + + + YNLD++Q ++ + + Sbjct: 312 ILSDTWHEALDAISETDTYNLDKKQHALTMIDRLKSV 348 >gi|260459471|ref|ZP_05807726.1| DNA polymerase III, delta prime subunit [Mesorhizobium opportunistum WSM2075] gi|259035025|gb|EEW36281.1| DNA polymerase III, delta prime subunit [Mesorhizobium opportunistum WSM2075] Length = 351 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 184/333 (55%), Gaps = 4/333 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P RL GH L+ Y SG++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPRLVGHRQAADMLAAAYRSGKLPHALIFAGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P F +AP + PDP SP +Q+A+ A L+L+ LN KT ++TV+TVDEIR++ F Sbjct: 74 PAFGQAPESLAVPDPASPLFRQIATGAHPGVLHLTRPLNDKTKSFKTVVTVDEIRKVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LSLT++ G +RV+++DP D MN NAANALLK+LEEPP + LF+LI HA ++L TIRSRC Sbjct: 134 LSLTSHDGSYRVVIVDPADDMNANAANALLKNLEEPPARTLFVLIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 ++ L + L LE + D + A GS AI + Y +I + Sbjct: 194 QVVRLTPLDADELLAVLETAEPPPPDDPAARAALVERAGGSARNAILLTQYGGLEIARTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L+ + + ++A+ + +DQ I FD L + +A AALSG L A Sbjct: 254 DGLVAAGKSDVG--GAYRLAEAVAGRDQAIQFDIFNRRALDLLSDAASQAALSGDLTRAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 ++ + + + YNLD++Q ++ + Sbjct: 312 NLSDTWHEALDAISETDTYNLDKKQHALTMIDR 344 >gi|319783484|ref|YP_004142960.1| DNA polymerase III, delta prime subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169372|gb|ADV12910.1| DNA polymerase III, delta prime subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 351 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/325 (37%), Positives = 185/325 (56%), Gaps = 4/325 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P L GH L+ Y +G++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPLLVGHGQAAGVLTAAYRAGKLPHALIFSGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PDF++AP + PDP S +Q+A+ A L+L+ LN KT ++TV+TVDEIR++ F Sbjct: 74 PDFAQAPESLAAPDPASSLFRQIATGAHPSVLHLTRPLNDKTKSFKTVVTVDEIRKVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LSLT++ G +RV+++DP D MN NAANALLK+LEEPP + LFILI HA ++L TIRSRC Sbjct: 134 LSLTSHDGSYRVVIVDPADDMNTNAANALLKNLEEPPARTLFILIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD--SKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 ++ L ++L LE + + + R + A GS AI + Y +I S+ Sbjct: 194 QVVRLTPLDADDLMAVLETTEPAPPEDPAARAALVERAGGSARNAILLTQYGGLEIASTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L+ + + ++A+ + +DQ I FD L + +A AAL+G L A Sbjct: 254 DALVTGRKSDVG--GAFRLAEAVAGRDQAIQFDIFNRRALDLLSDAASQAALAGDLARAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQ 324 ++ + + + YNLD++Q Sbjct: 312 TLSDTWHEALDAISETDTYNLDKKQ 336 >gi|218674617|ref|ZP_03524286.1| DNA polymerase III subunit delta' [Rhizobium etli GR56] Length = 273 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/274 (40%), Positives = 170/274 (62%), Gaps = 4/274 (1%) Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 1 PDPEAAPETIGDPDPASAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 60 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 61 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 120 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K L+++ + AL L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 121 LPLKLAPLADDAIVAALAHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAYDE 177 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+ AA GQ+ A+++ Sbjct: 178 VLSA-EGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGEGQIAAAERL 236 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 237 ARLYSEITERLTISDAYNLDRKQTIISILADIKQ 270 >gi|121602540|ref|YP_989110.1| DNA polymerase III subunit delta' [Bartonella bacilliformis KC583] gi|120614717|gb|ABM45318.1| DNA polymerase III, delta' subunit [Bartonella bacilliformis KC583] Length = 347 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 189/334 (56%), Gaps = 10/334 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ P+ N + GHE++ FL+Q R+HHALLFEGE+GIGKATL F +A ++L N Sbjct: 13 IEGILSPLQNNIIIGHEEVRHFLAQLRKEKRLHHALLFEGERGIGKATLAFHFAWNILSN 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S +Q+A + + +Y++ + KT K++T I++D+IR + YF Sbjct: 73 QENG-----FLQPEYDSVIWRQIAQGSHPNLVYVARRFDSKTKKFKTGISIDDIRNMMYF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L T+ G WRV++IDP D MNRNAANA+LK+LEEPP+K LFI+I+H+S +LSTIRSRC Sbjct: 128 LKQTSRNGEWRVVIIDPADDMNRNAANAILKTLEEPPEKTLFIIITHSSRKLLSTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK---ILHYDCDKIISS 238 + SL ++ + + + + S + VK+ S R K ++ Y +I + Sbjct: 188 QQVLLRSLHDDEMKQVISHIIPKQALSDEETVKMIIQKSEGRPRKAALLISYGGFEIAKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +L A+ + +A L S D I F + IL I K A A G L + Sbjct: 248 LDNLFKQSTCNLAI--VHNLAQALSSFDLDIQFQQFCDEILDRIQKKAILFAEQGALALS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + AQI+ ++ + + ++NLD++Q I +LL K Sbjct: 306 KKYAQIWQNIHQEILEMQLFNLDKKQFIINLLFK 339 >gi|110633934|ref|YP_674142.1| DNA polymerase III subunit delta' [Mesorhizobium sp. BNC1] gi|110284918|gb|ABG62977.1| DNA polymerase III, delta prime subunit [Chelativorans sp. BNC1] Length = 354 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 184/328 (56%), Gaps = 4/328 (1%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 +P N L GHE+ L+ Y +G++HHALLF G GIGKATL F A H+ NPD Sbjct: 18 EPPENPLLVGHENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRL 77 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P+ + D S + A A L+L+ + K++TVITVDEIRR+ FLSLT Sbjct: 78 GPLDFSDIDTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSLTP 137 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G +RV+++DP D MN NAANALLK+LEEPP + +FILI+H+ +L TIRSRC K Sbjct: 138 PDGGYRVVIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKL 197 Query: 187 NSLSENNLYKALEQL--KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 + LS L K L+ L + + +R + A GS AI + + +I + +L+ Sbjct: 198 DPLSPGLLEKLLQSLGASLPETEEERRLLIQRAQGSARDAILLTEFGGLEIEQAIENLLE 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 ++ + + ++A+ +++++ FD +L + +A +A +G + +A++ A Sbjct: 258 --QRRFDVPAAYKLAEAATGRERQVQFDLFNRAVLDRVANAASHSASAGDIAQAERFANF 315 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + L + + ++NLDR+Q + L++ Sbjct: 316 WEELAETIRQVEIFNLDRKQHVVSSLNR 343 >gi|114704620|ref|ZP_01437528.1| DNA polymerase III subunit delta [Fulvimarina pelagi HTCC2506] gi|114539405|gb|EAU42525.1| DNA polymerase III subunit delta [Fulvimarina pelagi HTCC2506] Length = 351 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 180/325 (55%), Gaps = 6/325 (1%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NPDFSKAPVRMC 72 L GH D+ + + GR+HHA L +G +G+GKAT F +A +L P S+ V Sbjct: 24 LIGHYDMFEEFRSAFAGGRLHHAWLLQGPRGVGKATTAFAFARLLLGVEPVVSREAVTF- 82 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 PD + +Q+A+ A ++++ + + +R+ ITVDE+RR+ F T +R Sbjct: 83 -PDQGA-VTRQIATDAHPGLIHVTRAAQERGTGFRSQITVDEVRRLARFFHATGVQDGYR 140 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +IDP D MNRNAANALLK LEEPP++ +F LI+HA +L TIRSRC ++F L + Sbjct: 141 IAIIDPADDMNRNAANALLKMLEEPPRRAVFFLINHAPGRLLPTIRSRCRFLRFAELGDE 200 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 L A+ +K D + AA GSV RA++I Y +I+ L+ R ++ Sbjct: 201 ALLSAIRTVKPDAASENADVLVHAAEGSVRRALQIAEYGGVEILKVLEPLLAAHRPDW-- 258 Query: 253 QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 M +AD+L + ++ ++D +E I I K+++AA +G A +++ ++ S R+ Sbjct: 259 NAMGSMADQLSMRGREASYDLAVEVITSTIAKASEAALRTGAPARAAELSALWQSEKNRI 318 Query: 313 HAFSMYNLDRRQMIFHLLSKARECN 337 + YNLDR+Q++ L + E N Sbjct: 319 REAAAYNLDRKQVLLTLYDRFHEAN 343 >gi|319405649|emb|CBI79272.1| DNA polymerase III, delta prime subunit [Bartonella sp. AR 15-3] Length = 351 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 12/338 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE++ FL Q G++HHALLFEGE+GIGKATL F A ++L Sbjct: 13 IDGILSPSQNNTLIGHEEVRHFLGQMLREGQLHHALLFEGERGIGKATLAFHLAWNIL-- 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P S +Q+ + +++S N KT K++T ITVD+IR I++F Sbjct: 71 ---NSQKNKFLQPGQDSIIWRQIKQGSHPGIIHVSRRFNVKTKKFKTEITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ G WR+I+ID D MNRNAANALLK+LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LTQTSRDGLWRIIIIDSADDMNRNAANALLKTLEEPPTKTLFIIISHSLGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 I L +N + KA+ +++ + ++ + GS+ +A +L + +II Sbjct: 188 QKISLRPLHDNEMQKAILHFFPNQELINPQNIETIIQ-KSQGSLRKAALLLCHGGLEIIQ 246 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + L+ + + +A L D I F + IL I K A G + Sbjct: 247 TINKLLEQSICDPVI--AHNLAQALSLSDTDIQFQQFCDEILDRIHKKAIMLLKEGAIHL 304 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + A+ + ++ + + +NLD++Q + +LL K E Sbjct: 305 SKKYAETWQNVFQEIIEIQSFNLDKKQFVINLLFKTHE 342 >gi|49474219|ref|YP_032261.1| DNA polymerase III subunit delta' [Bartonella quintana str. Toulouse] gi|49239723|emb|CAF26102.1| DNA polymerase III, delta prime subunit [Bartonella quintana str. Toulouse] Length = 351 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/334 (35%), Positives = 179/334 (53%), Gaps = 14/334 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 ID P N +FGHE FL+Q GR+HHAL+FEGE GIGKATL F A ++L Sbjct: 13 IDTVLSPSQNNIIFGHEAARHFLAQMRQEGRLHHALIFEGEHGIGKATLAFHLAWNILSS 72 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 Q DF P+ S +Q+ + L++S + KT K++T I +D+IR I Sbjct: 73 QKGDF-------LQPESNSITWRQITQGSHPCLLHISRRFDVKTQKFKTGILIDDIRDIM 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +FL T+ WR+++IDP D MNR+AANA+LK+LEEPP K LFI+I+H+S +L TIRS Sbjct: 126 HFLHKTSQDNGWRIVIIDPADDMNRSAANAILKTLEEPPAKTLFIIITHSSGKLLPTIRS 185 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA---AYGSVARAIKILHYDCDKII 236 RC I L ++ + K + + + +K+ + GS +A ++H+ +I+ Sbjct: 186 RCQQISLRPLHDDEMKKVITHVFFNQNRLNEETIKMIVQRSKGSPRKAALLIHHGGLEIV 245 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + L+ A+ + +A L S I F IL +I K A A G L Sbjct: 246 KNIDTLLEQSVCNPAI--VHTLAQTLSSLSSVIQFQQFCNEILDKIQKKAIMLAEKGNLA 303 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 + + AQI+ + + V +NLD++Q I +LL Sbjct: 304 LSKKYAQIWQEIHQEVEEMQSFNLDKKQFIINLL 337 >gi|240850632|ref|YP_002972032.1| DNA polymerase III subunit delta' [Bartonella grahamii as4aup] gi|240267755|gb|ACS51343.1| DNA polymerase III subunit delta' [Bartonella grahamii as4aup] Length = 347 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 179/337 (53%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N +FGHED+ FL+Q R+HHALLFEGE GIGKATL F A ++L Sbjct: 13 IDTILSPSQNDVVFGHEDVRHFLTQMLKEERLHHALLFEGEYGIGKATLAFHLAWNIL-- 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S PDP S +Q+ + LY+S + KT K++T I VD++R I +F Sbjct: 71 ---SSQQDAFLKPDPYSTPWRQITQGSHPGLLYISRRFDVKTQKFKTGILVDDVRDIMHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS T+ WR+++ID D MNRNAANA+LK LEEPP K LF++I+H+S +L TI SRC Sbjct: 128 LSRTSQDNGWRIVIIDSADDMNRNAANAILKILEEPPSKTLFVIIAHSSGKLLPTIHSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I F L+ + + K + + + + + + + + GS +A ++ +D +II + Sbjct: 188 QKISFRPLNNDEMKKVIIHIFANQNLPDEKTIEIIIKKSKGSPRKAALLICHDGLEIIKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ P + + +A S F + IL +I K A G L + Sbjct: 248 IDVLLEKPVCNATI--VHTLAQTFSSVSSTFQFQQFCDEILNKIQKKAIMLVEKGDLFLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A+ + + + + ++NLD++Q + +LL K + Sbjct: 306 KKYAEKWQEIHQEIEEIQLFNLDKKQFVINLLFKVHK 342 >gi|319407219|emb|CBI80858.1| DNA polymerase III, delta prime subunit [Bartonella sp. 1-1C] Length = 351 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 179/339 (52%), Gaps = 14/339 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 ID P N L GHE+ FL Q G +HHALLFEGE+GIGKATL F +A ++L Sbjct: 13 IDGILPPSQNNILIGHEEARHFLEQMLREGWLHHALLFEGERGIGKATLAFHFAWNILNS 72 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 Q FS+ P+ S +Q+ +++S N KT K++T ITVD+IR I+ Sbjct: 73 QKDKFSQ-------PEQDSIIWRQIKQGTHPSIIHVSRRFNTKTKKFKTGITVDDIRDIK 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +FL+ T+ WR+I+ID D MN+NA NA+LK LEEPP K LFI+ISH+ +L TIRS Sbjct: 126 HFLNQTSQDSLWRIIIIDSADDMNKNATNAILKMLEEPPTKTLFIIISHSLGKLLPTIRS 185 Query: 180 RCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 RC I L + + KA+ +++ + + + GS+ +A +L YD ++I Sbjct: 186 RCQKISLRPLHNDEMQKAILHFFSNQVLTNPKNIETIIHKSRGSLRKAALLLCYDGLEVI 245 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + L+ + + +A L S D +I F IL I K A G + Sbjct: 246 QTINQLLEQSICNPVI--VHNLAQVLSSSDAEIQFQQFCNEILDIIHKKALKLVEEGAIH 303 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + AQ + + + + +NLD++Q + +LL K E Sbjct: 304 LSKKYAQTWQDIFQEMIEIQSFNLDKKQFVINLLFKIHE 342 >gi|319404209|emb|CBI77802.1| DNA polymerase III, delta prime subunit [Bartonella rochalimae ATCC BAA-1498] Length = 351 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 180/334 (53%), Gaps = 10/334 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE+ FL Q GR++HALLFEGE+GIGKATL F +A ++L Sbjct: 13 IDGILSPSQNNILIGHEEARHFLEQMLREGRLYHALLFEGERGIGKATLAFHFAWNIL-- 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P+ S +Q+ + +++S N KT K++T ITVD+IR I++F Sbjct: 71 ---NSQKDKFLQPEQDSIIWRQIKQGSHPSIIHVSRRFNTKTKKFKTGITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ WR+I+ID D MN+NA NA+LK LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LNQTSQDSLWRIIIIDSADDMNKNATNAILKMLEEPPTKTLFIIISHSLGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L ++ + KA+ +++ + + + GS+ +A +L YD ++I + Sbjct: 188 QKISLRPLHKDEMQKAISHFFSNQVLTNPQNIETIIHKSRGSLRKAALLLCYDELEVIQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + A L S D +I F IL I K A G + + Sbjct: 248 INQLLEQSICNPVI--VHNFAQALSSSDAEIQFQQFCNEILDIIHKKALKLVEEGAIHLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + AQ++ ++ + + +NLD++Q + +LL K Sbjct: 306 KKYAQMWQNIFQAMIEMQSFNLDKKQFVINLLFK 339 >gi|319898927|ref|YP_004159020.1| DNA polymerase III, delta prime subunit [Bartonella clarridgeiae 73] gi|319402891|emb|CBI76442.1| DNA polymerase III, delta prime subunit [Bartonella clarridgeiae 73] Length = 350 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 182/337 (54%), Gaps = 11/337 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE + FL+Q GR+HHALLFEGE+GIGKATL F +A ++L Sbjct: 13 IDGILSPSQNNILIGHEKVRHFLAQMLRKGRLHHALLFEGERGIGKATLAFHFAWNIL-- 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P S +Q+ + +++S+ + KT K++T ITVD+IR I++F Sbjct: 71 ---NSQKNEFLQPKQDSVIWRQIKQGSHPSIIHVSHRFDAKTKKFKTGITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ WR+++ID D MNRNAANA+LK+LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LNQTSQ-DEWRIVIIDSADNMNRNAANAILKTLEEPPTKTLFIVISHSLGKLLPTIRSRC 186 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L+++ + KA+ + +I+ + + + GS+ +A +L + +I+ + Sbjct: 187 QKISLRPLNDDEMKKAISHVFSDQILTDQQNIETIIQKSQGSLRKAALLLCHGGLEIVQT 246 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + A L S D I F + IL I K A + Sbjct: 247 INKLLEQSICNPVI--VHNFAQSLSSSDSDIQFQQFCDEILDRIQKRAIMLIEKRAFALS 304 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQI+ ++ + + +NLD++Q I +LL K + Sbjct: 305 KKYAQIWQNIFQEIIEVQSFNLDKKQFIINLLFKTHK 341 >gi|319408564|emb|CBI82217.1| DNA polymerase III, delta prime subunit [Bartonella schoenbuchensis R1] Length = 351 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 181/337 (53%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ P N + GH+++ FL+Q GR+HHALLFEGE+GIGKATL F +A ++L N Sbjct: 13 IEGVLSPSQNNIIIGHKEVRHFLAQIRKEGRVHHALLFEGERGIGKATLAFHFAWNILSN 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S Q+ + +++S + KT K++T I++D+IR + +F Sbjct: 73 QESD-----FLQPEYDSVVWHQIMQGSHPGLIHVSRHFDLKTQKFKTSISIDDIRDVTHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ G WR+I+ID D M+R+AANA+LK LEEPP K LFI+I+H S +L TIRSRC Sbjct: 128 LNQTSQDGGWRIIIIDSADDMSRSAANAILKMLEEPPVKALFIIITHCSGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQ-LKIMGWDSKR--DFVKIAAYGSVARAIKILHYDCDKIISS 238 I L ++ + + + L G K + V + G+ +A+ + Y +I+ + Sbjct: 188 QQISLRPLCDDEMKQVISHILSDQGGADKETMEMVIQKSQGNPRKALLLTCYSGLEIVQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + AL + +A L S D + F + IL +I K A A G L + Sbjct: 248 IDSFLEQSVCNLAL--VHNLAQTLSSSDSDVKFQQFCDEILDKIQKKAIVLAEKGILTLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQ + + + + +NLD++Q I +LL K + Sbjct: 306 KKYAQTWQEIYQEIAQLQSFNLDKKQFIINLLFKVHK 342 >gi|163868323|ref|YP_001609532.1| DNA polymerase III subunit delta' [Bartonella tribocorum CIP 105476] gi|161017979|emb|CAK01537.1| DNA polymerase III, delta prime subunit [Bartonella tribocorum CIP 105476] Length = 347 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 174/332 (52%), Gaps = 10/332 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N FGHED+ FL+Q R+HHALLFEGE GIGKATL F A ++L Sbjct: 13 IDTILSPSQNNISFGHEDVRHFLTQMLKEERLHHALLFEGEYGIGKATLAFHLAWNIL-- 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S PD S +Q+ + LY+S + KT K++T I +D+IR I +F Sbjct: 71 ---SSQKGAFLKPDLHSVTWRQITQGSHPGLLYISRRFDVKTQKFKTGILIDDIRDITHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS T+ WR+++ID D MNRNAANA+LK LEEPP K LFI+I+H+S +L TIRSRC Sbjct: 128 LSRTSQDNGWRIVIIDAADDMNRNAANAILKILEEPPAKALFIIIAHSSGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I F L+ + + K + + + + + + + + GS +A ++ + +II + Sbjct: 188 QKISFRPLNHDEMKKVITHIFTNQDLPDEKTIEMIIKKSKGSPRKAALLICHGGLEIIKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ P + + +A S F + IL +I + A L + Sbjct: 248 IDALLKQPACNATI--VHTLAQTFSSVSSPFQFQQFCDEILDKIQQKAITLVEKENLFLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 + AQ + + + + ++NLD++Q + +LL Sbjct: 306 KKYAQKWQEIHREIEEVQVFNLDKKQFVINLL 337 >gi|148255488|ref|YP_001240073.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. BTAi1] gi|146407661|gb|ABQ36167.1| DNA polymerase III, delta prime subunit [Bradyrhizobium sp. BTAi1] Length = 346 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 175/328 (53%), Gaps = 11/328 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH D E L Y SGRM HA L G QGIGKATL +R A VL + D S Sbjct: 15 PRETTALFGHRDAEAALLAAYRSGRMAHAWLIGGPQGIGKATLAYRMARFVLTHRDPSSP 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 VR +P + +AS A L L S N K G RTVITVDE R F Sbjct: 75 AVRAATSLHVEPDDHVARLIASEAHGGLLTLERSANDK-GVLRTVITVDETRETISFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC + Sbjct: 134 TAAVEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIKSRCRRL 193 Query: 185 KFNSLSENNLYK--ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 +LS +++ A G + RD + A+ GSVAR + ++ D ++ S L Sbjct: 194 ALRALSTDDVISAAAEATGMAAGDPALRDAAR-ASEGSVARTLMLMGGDGLQLQSRTTAL 252 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +PR + ++ + D L + D ++A ++ I + + + + + + +L ++ Sbjct: 253 LASLPRIDPG--ELHALGDALGTSD-RVALASFLDSIERWVAERLRTSDPNAELPRLARL 309 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 A+++ +V+ YNL+R+ ++F + Sbjct: 310 AEVWEKIVRAARDTESYNLERKPLVFSV 337 >gi|90417680|ref|ZP_01225592.1| DNA polymerase III, delta prime subunit domain protein, putative [Aurantimonas manganoxydans SI85-9A1] gi|90337352|gb|EAS51003.1| DNA polymerase III, delta prime subunit domain protein, putative [Aurantimonas manganoxydans SI85-9A1] Length = 352 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 178/339 (52%), Gaps = 12/339 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D P LFGH L+ +GR+HHA LF+G +G+GKAT F +A H+L + Sbjct: 15 LDGVPPPAATPTLFGHRREFAELASAEAAGRLHHAWLFQGPRGVGKATTAFAFARHLL-S 73 Query: 62 PDFSKAPVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P ++K P DP P ++Q+A ++++ K +RT ITV+ +R++ Sbjct: 74 PAYAKG----TEPPVFDPADPAMRQIALGTYPGLVHVTRPPVEKGTGFRTQITVEGVRKL 129 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F T + WR+ +IDP D MNR+AANALLK LEEPP + +F++++H +L TIR Sbjct: 130 NRFFQATGSRTSWRIAIIDPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIR 189 Query: 179 SRCLSIKFNSLSENNL-YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 SRC +++F L +++L L G D + + + GS +AI ++ Y +I Sbjct: 190 SRCRTLRFEPLGDHDLAAATAAALPSAGKDEIAAALPL-SEGSARQAISLIAYGGIEIRQ 248 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 S LI R ++ + +AD L + ++ A++FLI +L ++++A G Sbjct: 249 SLQTLIAADRPDW--NSIHSMADALTQKGREQAYEFLITALLSATAEASEACLSRGDSAG 306 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A +A ++ R+ + YNLDR+Q + L + C Sbjct: 307 AASLAALWQDETSRLREAAAYNLDRKQALLTLFDRFYRC 345 >gi|146340770|ref|YP_001205818.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. ORS278] gi|146193576|emb|CAL77593.1| putative DNA polymerase III, delta prime subunit [Bradyrhizobium sp. ORS278] Length = 346 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/327 (34%), Positives = 173/327 (52%), Gaps = 9/327 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH + E L Y SGRM HA L G QGIGKATL +R A VL + D A Sbjct: 15 PRETTALFGHCEAEAALLSAYRSGRMAHAWLIGGPQGIGKATLAYRMARFVLTHRDPRAA 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V D + +AS A L L S N K G RTVITVDE R F Sbjct: 75 EVLAAESLHVDADDHVTRLIASEAHGGLLTLERSANDK-GVLRTVITVDETRETISFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WR+ ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC + Sbjct: 134 TAAVEGWRICIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIKSRCRRL 193 Query: 185 KFNSLS-ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 +LS E+ + A E + + G + A+ GSV+R + ++ D ++ + L+ Sbjct: 194 SLRALSTEDVISAAAEAIGMDGGEPALREAAKASEGSVSRTLMLMGGDGLQLQTRTAALL 253 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 +PR + ++ + D L + D ++A ++ I + + + +A + +L ++A Sbjct: 254 ASLPRIDAG--ELHALGDALGTSD-RVALASFLDSIERWVAERLRAGDPNAELPRLARLA 310 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +++ +V+ YNL+R+ ++F + Sbjct: 311 EVWEKIVRAARDTESYNLERKPLVFSV 337 >gi|304391676|ref|ZP_07373618.1| DNA polymerase III subunit delta' [Ahrensia sp. R2A130] gi|303295905|gb|EFL90263.1| DNA polymerase III subunit delta' [Ahrensia sp. R2A130] Length = 351 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 167/326 (51%), Gaps = 3/326 (0%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P ++ + GH+ L+ + +GR+HHA + G +G+GK+TL +A H+ +P + A Sbjct: 19 PAASRSVVGHDGAMSQLTSAHRAGRLHHAWMISGPRGVGKSTLALNFAKHLFAHPAGAHA 78 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P ++ + + L+L+ +PK +++T ++VDEIRR F +TA Sbjct: 79 PEAFDGGSISDALHGSVSQGSHNQLLHLTRPWDPKGERFKTQLSVDEIRRTVPFYGMTAG 138 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G +RV +ID D MN +AANA+LK LEEPP K +F +++HA ++L TIRSRC + + Sbjct: 139 GGGYRVTIIDAADDMNTSAANAVLKMLEEPPAKSIFFVLAHAPGSLLPTIRSRCRVLPLD 198 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPR 247 LS N+ L + + G A GSV RAI++ D K S + L+ P+ Sbjct: 199 PLSPENISSILNTVSLDGAGEGSGDAARLAQGSVRRAIQLQQGDVLKFYSQFESLMKQPK 258 Query: 248 QEYALQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIY 305 A + +AD L + + A+D IE +L I + + + + A ++ Sbjct: 259 PGEARDWVAVHMLADNLSKRGGEAAYDLFIELVLDWIASRVRENP-NVPVAWMARWADLH 317 Query: 306 FSLVKRVHAFSMYNLDRRQMIFHLLS 331 + V YNLD++Q++ +L S Sbjct: 318 TKVRDAVRLAGAYNLDKKQVLLNLFS 343 >gi|27379628|ref|NP_771157.1| DNA polymerase III subunit delta' [Bradyrhizobium japonicum USDA 110] gi|27352780|dbj|BAC49782.1| bll4517 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/329 (34%), Positives = 171/329 (51%), Gaps = 11/329 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH + E L Y SGR+ HA L G QGIGKATL +R A VL + Sbjct: 15 PRETSRLFGHREAETALLSAYRSGRIPHAWLIGGPQGIGKATLAYRMARFVLAHGQPLAD 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ DP +Q+A+ + L L + N + G RTVITVDE R F Sbjct: 75 VVQRAESLAVDPDDAVARQVAAESHGGLLTLERTANDR-GVMRTVITVDETRETISFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC + Sbjct: 134 TAAAEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIQSRCRKL 193 Query: 185 KFNSLSENNLYKALEQLKIMG-WDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 + L + + A + + D A+ GSVARA+ +L D K+ L+ Sbjct: 194 RLRPLGTDEVISAAAEAAGLAPTDLALREAAEASEGSVARALTLLGGDALKLQQRTAALL 253 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS--AKAAALSGQLEEADQ 300 +P+ + +++ + D L + D ++A I+ I + I + A A + L + Sbjct: 254 ARLPQVDP--RELHTLGDSLGTSD-RVALAAFIDGIDRWIAERLHADEANANQNLPRLAR 310 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +A+++ +V+ YNL+R+ ++F + Sbjct: 311 LAEVWEKIVRAARDTETYNLERKPLVFSV 339 >gi|49475611|ref|YP_033652.1| DNA polymerase III subunit delta' [Bartonella henselae str. Houston-1] gi|49238418|emb|CAF27645.1| DNA polymerase III, delta prime subunit [Bartonella henselae str. Houston-1] Length = 350 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/333 (34%), Positives = 169/333 (50%), Gaps = 13/333 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 ID P N +FGHE FL+Q R+ HA+LFEG+ GIGKATL F A ++L Sbjct: 13 IDIVSSPSQNNIIFGHEAARHFLAQILKEERLPHAILFEGDYGIGKATLAFHLAWNILSS 72 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 Q F + P+ S +Q+ + L++S + KT K++T I D+IR I Sbjct: 73 QKDGFKQ-------PEHNSVIWRQITQGSHPGLLHISRRFDVKTQKFKTGILFDDIRDII 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +FL+ T+ WR+++IDP D MNRNAANA+LK+LEEPP K LFI+I+H S +L TIRS Sbjct: 126 HFLNRTSKDSGWRIVIIDPADDMNRNAANAILKTLEEPPAKTLFIIITHFSGKLLPTIRS 185 Query: 180 RCLSIKFNSLSENNLYKALEQL--KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RC I L + + K + + D + + I R +L + +II Sbjct: 186 RCQQISLRPLHNDEMKKIIIHMFSNQNVIDEENIGMIIQKSNGNPRKAALLIHGGFEIIK 245 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + L+ + + +A L S I F + IL +I K A A G L Sbjct: 246 TIDTLLGQSVCNPTI--VHNLAQTLSSLSSVIQFQQFCDEILDKIQKKAIMLAERGNLAL 303 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 + + AQ + + + + +NLD++Q I +LL Sbjct: 304 SKKCAQAWQEIHQEIGEIQSFNLDKKQFIINLL 336 >gi|118589861|ref|ZP_01547265.1| DNA polymerase III subunit delta' [Stappia aggregata IAM 12614] gi|118437358|gb|EAV43995.1| DNA polymerase III subunit delta' [Stappia aggregata IAM 12614] Length = 353 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 13/328 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSK 66 P RL GH E+ L + Y S R+HHA + G +GIGKATL FR+A V+ NPD F Sbjct: 22 PHERDRLIGHAKTEQALLEAYRSERLHHAWILGGPKGIGKATLAFRFARFVIANPDRFGP 81 Query: 67 --APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 A R P +Q+ + + L+L + K+ +++ + VDE+RR F Sbjct: 82 EVASARDLAVMQDHPVARQLKAGGHPNVLHLRRPWDDKSKRFKADLPVDEVRRTVSFFGT 141 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA+ WR+ ++D D MN ++ANALLK LEEPPQ+ LF+++SHA +L TIRSRC + Sbjct: 142 TASAKAWRICIVDAADDMNISSANALLKILEEPPQRCLFLVLSHAPGRLLPTIRSRCRRL 201 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDL 242 + L+E + + L+ L S D ++A A GS+ AI +L D I L Sbjct: 202 DLDPLTEEEVAQGLQDLSGGSVASSDDLRELALTADGSLRSAITLLSGDGLAIAKGVRQL 261 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKI---AFDFLIEFILKEICKSAKAAALSGQLEEAD 299 P Q L + +AD + ++ Q +F +++ L + + L+ + +A Sbjct: 262 ADRPHQ-LDLAAVHALADLVAARGQSDNWESFQHIMQIWLHDRMRR----NLANGVRDAH 316 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 I +++ + K + NLD++Q++ Sbjct: 317 GIVELWEKMNKAIRDADALNLDKKQVVL 344 >gi|298291755|ref|YP_003693694.1| DNA-directed DNA polymerase [Starkeya novella DSM 506] gi|296928266|gb|ADH89075.1| DNA-directed DNA polymerase [Starkeya novella DSM 506] Length = 344 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/337 (31%), Positives = 169/337 (50%), Gaps = 20/337 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL GHE+ + + + +GR+ HALL G +GIGKATL + A VL A Sbjct: 17 PRERTRLIGHEEAQTMVRAAWDAGRLPHALLLGGAEGIGKATLAYTIARFVLSG---GAA 73 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P DP P +Q+A+ + D L L N +GK ++I +++R++R F TA Sbjct: 74 PAHSLTVDPSHPAARQVAALSHPDLLVLRRVPN-DSGKLPSMIPAEQVRKVRSFFGSTAA 132 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G WRV ++D +D MN ANALLK+LEEPP + LF+L+SHA +L TIRSRC + Sbjct: 133 LGGWRVCIVDTLDEMNAQGANALLKTLEEPPSRSLFLLVSHAPGRLLPTIRSRCRMVPLR 192 Query: 188 SLSENNLYKALEQLKIMGWDSKRD-FVKI--AAYGSVARAIKILHYDCDKIISSYIDLIH 244 +L+ + ALE L + D R F + A+ GSV A+ +L D + ++ L+ Sbjct: 193 ALTGEEVVAALEDLADVLPDLDRSRFTEAAEASGGSVREALSLLSGDGLAVRNATSVLLD 252 Query: 245 I-----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 P+ +AL E L D+ A + + + + A S + A Sbjct: 253 SLPDVDPKALHAL-------GEKLQGDRGGALESFVSTVEDWVSDHATGRRQSTAVRLA- 304 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ +++ + + +YNLDR+ ++F + + E Sbjct: 305 RLPEVWEKVRRAAVDADVYNLDRKTLVFRIFASLDEA 341 >gi|92117539|ref|YP_577268.1| DNA polymerase III subunit delta' [Nitrobacter hamburgensis X14] gi|91800433|gb|ABE62808.1| DNA polymerase III, delta prime subunit [Nitrobacter hamburgensis X14] Length = 346 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 11/326 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH + E+ L Y GR+ HA L G GIGKATL +R A VL + D + + Sbjct: 15 PRETTALFGHGEAERTLLDAYRGGRIPHAWLIGGAPGIGKATLAYRMARFVLAHGDPAMS 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 PV+ DP P + +A+ L L + N K G RTVI+V++ R F Sbjct: 75 PVQSAETLELDPMHPVARHVAADTHGGLLTLERTPNEK-GVMRTVISVEQTRETIAFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA G WRV ++D VD +N NAANALLK LEEPP LF+L+SHA IL TI+SRC + Sbjct: 134 TAAVGGWRVCIVDTVDELNPNAANALLKVLEEPPHLSLFLLVSHAPARILPTIQSRCRKL 193 Query: 185 KFNSLSENNLYKALEQLKIMGWD--SKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L+ ++ +A + + D S R+ AA GSVARA+ ++ K+ L Sbjct: 194 ALRPLAAGDVIRAAAEAARIAPDDASLREAAD-AAEGSVARALALVGGGALKLHQRTAAL 252 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +P+ + +++ + D L D + A ++ + + I + + + L ++ Sbjct: 253 LDSLPQVDP--RELHALGDALGGSD-RAALGAFVDSVDRWIAERLRTGDANANLPRLARL 309 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIF 327 A+++ + YNL+R+ ++F Sbjct: 310 AEVWEKINNAARETETYNLERKPLVF 335 >gi|114770995|ref|ZP_01448435.1| DNA polymerase III subunit delta [alpha proteobacterium HTCC2255] gi|114548277|gb|EAU51163.1| DNA polymerase III subunit delta [alpha proteobacterium HTCC2255] Length = 371 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 161/293 (54%), Gaps = 16/293 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFS- 65 P + Q ++GH + Y + R+HHA + G +GIGKATLG++ A +L QN S Sbjct: 18 PRHTQIIYGHNSPQFDFLDAYKTERLHHAWMITGSRGIGKATLGYKIAKFILSQNQSISD 77 Query: 66 -----KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIR 119 K + + + P S + + LYL L + K K++ ITVDEIR+++ Sbjct: 78 INQDLKDTLDIQSDHPVSKRINALG----EPNLYLVRRLWDEKLKKFKQNITVDEIRKLK 133 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F S++A G WRV +ID D MN AANALLK LEEPP+KVL +LISH ++ TIRS Sbjct: 134 NFFSMSAADGGWRVAIIDAADEMNNAAANALLKILEEPPKKVLILLISHQPLRLMPTIRS 193 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 RC S+K N+LS +L ALEQL I K + I A GSV +++++ + +I +S Sbjct: 194 RCRSLKCNNLSSEDLANALEQLDIEQSQDKEQ-INILANGSVGSSVELISNNGIEIYNSI 252 Query: 240 IDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + L IP+ Q +Q++AD ++ ++ + + I + AK A+ Sbjct: 253 VQLAKQIPQMNR--QSIQKLADSCAGKNAAERYEITLRLFMLFISRLAKFGAM 303 >gi|86749797|ref|YP_486293.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris HaA2] gi|86572825|gb|ABD07382.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris HaA2] Length = 346 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 168/334 (50%), Gaps = 17/334 (5%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P LFGH E+ L Y SGR+ HA L G QGIGKATL +R A VL + D Sbjct: 12 AKSPRETTALFGHAAAEQALLDAYRSGRIAHAWLIGGPQGIGKATLAYRMARFVLAHRDP 71 Query: 65 SKAPVR---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V+ + DP P V+ +A+ A L L S+N K G R VITVDE R F Sbjct: 72 MADAVQGAATLDLDPSHPVVRHVAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETIGF 130 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA WRV ++D VD +N ++ANALLK +EEPPQ+ LF+LIS++ +L TI SRC Sbjct: 131 FGSTAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPARLLPTILSRC 190 Query: 182 LSIKFNSLSENN-LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKII 236 + LS ++ + ALE + D+K A+ GSVARA+ +L D K Sbjct: 191 RKLMLRPLSVSDVIAAALEATDLSPGDAKLAEAAAASEGSVARALTLLGGDALTLQQKTT 250 Query: 237 SSYIDLIHI-PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + L ++ PR +AL E + + ++ + + I + + +L Sbjct: 251 ALLDSLPNVDPRALHAL-------GEAIGGTDRTTLAAFVDGVDRWIAGRLRTGDANAEL 303 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 ++A+++ + + YNL+R+ ++F + Sbjct: 304 PRLARLAEVWEKIGRAARDTEAYNLERKPLVFSV 337 >gi|126463088|ref|YP_001044202.1| DNA polymerase III subunit delta' [Rhodobacter sphaeroides ATCC 17029] gi|126104752|gb|ABN77430.1| DNA polymerase III, delta prime subunit [Rhodobacter sphaeroides ATCC 17029] Length = 370 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 9/295 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P Q LFGH E + SGR+HH L G G+GKATL +R A +L Sbjct: 12 VEGAPHPRETQALFGHARAEAEFLATFSSGRLHHGWLITGPLGVGKATLAWRIARFLLAT 71 Query: 62 PD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P F+ AP DP P +++++ A L + + K + +T ITV+E+RR Sbjct: 72 PPADGLFAAAPPDSLAIDPDHPVARRVSALAEGRLFLLRRAWDEKAKRLKTQITVEEVRR 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ F +L+A G RV ++DP D MN +AANALLK LEEPP+ V +L+ H +L TI Sbjct: 132 MKAFFALSAADGGRRVAIVDPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTI 191 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC ++ L+ ++ +AL + D ++A GS AI++ + D K+ Sbjct: 192 RSRCRELRLAPLAPEDMARALAAAGVEA-DDPAALAELAG-GSAGEAIRVANLDGVKLYR 249 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L+ +PR + A K+ +AD + + F+ ++ I + + A+A L Sbjct: 250 ALVGLLSTLPRLDRA--KLVALADAASGKGAEPQFELMLTLIDLFLARLARAGTL 302 >gi|299133889|ref|ZP_07027083.1| DNA polymerase III subunit delta' [Afipia sp. 1NLS2] gi|298591725|gb|EFI51926.1| DNA polymerase III subunit delta' [Afipia sp. 1NLS2] Length = 347 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 13/329 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L GH E L Y SG++ HA L G QGIGKATL +R A VL +PD S Sbjct: 16 PRETTSLHGHAAAEASLLTAYKSGQIPHAWLIGGGQGIGKATLAYRMARFVLAHPDPSSQ 75 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ D P +Q+A+ + L L S N K G R+VITVDE R F Sbjct: 76 DVQQAGTLQVDAPHPVARQIAAGSHGGLLTLERSANDK-GVMRSVITVDESRETISFFGS 134 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N NA+NALLK LEEPP + LF+L+S+ +L+TI+SRC + Sbjct: 135 TAAVAGWRVCIVDTVDELNANASNALLKILEEPPSRSLFLLVSNMPSRVLATIQSRCRKL 194 Query: 185 KFNSLSENNLYKA-LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---DKIISSYI 240 LS + + A E ++ D + AA GSVA A+ ++ + + ++ + Sbjct: 195 SLRPLSVDEVIAAGAEAMQSDAADPQLREAAEAADGSVAHALMLIGGEALGLQQRTAALL 254 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D+ +PR ++ + + + D L D ++A +E + + + +A L L + Sbjct: 255 DM--LPRLDH--RALHALGDALPLND-RVALRTFVETVERWLSARLRADELQSNLPRLAR 309 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 A+++ + K +NL+R+ ++F + Sbjct: 310 FAEVWEKVGKAARETESFNLERKPLVFSV 338 >gi|221640130|ref|YP_002526392.1| DNA polymerase III subunit delta' [Rhodobacter sphaeroides KD131] gi|221160911|gb|ACM01891.1| DNA polymerase III, delta prime subunit [Rhodobacter sphaeroides KD131] Length = 370 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 161/313 (51%), Gaps = 14/313 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P Q LFGH E + SGR+HH L G G+GKATL +R A +L Sbjct: 12 VEGAPHPRETQALFGHARAEAEFLATFSSGRLHHGWLITGPLGVGKATLAWRIARFLLAT 71 Query: 62 PD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P F+ P DP P +++++ A L + + K + +T ITV+E+RR Sbjct: 72 PPADGLFAAPPPDSLGIDPDHPVARRVSALAEGRLFLLRRAWDEKAKRLKTQITVEEVRR 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ F +L++ G RV ++DP D MN +AANALLK LEEPP+ V +L+ H +L TI Sbjct: 132 MKAFFALSSADGGRRVAIVDPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTI 191 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC ++ L+ ++ +AL + D ++A GS AI++ + D K+ Sbjct: 192 RSRCRELRLAPLAPEDMARALAAAGVEA-DDPAALAELAG-GSAGEAIRVANLDGVKLYR 249 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL----- 291 + + L+ +PR + A K+ +AD + + F+ ++ I + + A+A L Sbjct: 250 ALVGLLSTLPRLDRA--KLVALADAASGKGAEPQFELMLTLIDLFLARLARAGTLRLLPP 307 Query: 292 SGQLEEADQIAQI 304 EAD IA++ Sbjct: 308 EAVPGEADLIARL 320 >gi|77464246|ref|YP_353750.1| DNA polymerase III subunit delta' [Rhodobacter sphaeroides 2.4.1] gi|77388664|gb|ABA79849.1| DNA polymerase III, delta prime subunit [Rhodobacter sphaeroides 2.4.1] Length = 370 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 161/313 (51%), Gaps = 14/313 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P Q LFGH E + SGR+HH L G G+GKATL +R A +L Sbjct: 12 VEGAPHPRETQALFGHARAEAEFLAAFSSGRLHHGWLITGPLGVGKATLAWRIARFLLAT 71 Query: 62 PD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P F+ P DP P +++++ A L + + K + +T ITV+E+RR Sbjct: 72 PPADGLFAAPPPDSLAIDPDHPVARRVSALAEGRLFLLRRAWDEKAKRLKTQITVEEVRR 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ F +L+A G RV ++DP D MN +AANALLK LEEPP+ V +L+ H +L TI Sbjct: 132 MKAFFALSAADGGRRVAIVDPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTI 191 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC ++ L+ ++ +AL + D ++A GS AI++ + + K+ Sbjct: 192 RSRCRELRLAPLAPEDMARALAAAGVEA-DDPAALAELAG-GSAGEAIRVANLEGVKLYR 249 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL----- 291 + + L+ +PR + A K+ +AD + + F+ ++ I + + A+A L Sbjct: 250 ALVGLLSTLPRLDRA--KLVALADAASGKGAEPQFELMLTLIDLFLARLARAGTLRLLPP 307 Query: 292 SGQLEEADQIAQI 304 EAD IA++ Sbjct: 308 EAVPGEADLIARL 320 >gi|110680631|ref|YP_683638.1| DNA polymerase III subunit delta' [Roseobacter denitrificans OCh 114] gi|109456747|gb|ABG32952.1| hypothetical protein RD1_3467 [Roseobacter denitrificans OCh 114] Length = 368 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P ++FG E+ Y +GR+HHA L G +G+GKATL + A +L Sbjct: 7 IEGAPHPRDTPQVFGQATAEQGFLDAYATGRLHHAWLLTGPRGVGKATLAWAIARFLLAT 66 Query: 62 P--------DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P AP + DP P +++A+ A +++ S N KTG+ R VI VD Sbjct: 67 PPQEDEGLFGAPPAPTTLAI-DPEHPVARRIAAGAEPGLKHITRSENEKTGRMRDVIAVD 125 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR + F L+A G RV+++D D MN AANALLK LEEPP + ILISH + Sbjct: 126 DIRGLSSFFQLSATEGGRRVVIVDAADEMNPQAANALLKMLEEPPARATLILISHQPSGL 185 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L TIRSRC ++ +L ++ KAL Q I +++ GSV A+++ ++D Sbjct: 186 LPTIRSRCRVLRLGTLQPEDMEKALTQAGIDPAGHGPALAELSG-GSVGAAVRLSNFDGL 244 Query: 234 KIISSYIDLI 243 K + + LI Sbjct: 245 KTYAELVQLI 254 >gi|114327740|ref|YP_744897.1| DNA polymerase III subunit delta' [Granulibacter bethesdensis CGDNIH1] gi|114315914|gb|ABI61974.1| DNA polymerase III, delta' subunit [Granulibacter bethesdensis CGDNIH1] Length = 342 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 24/340 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA---------GHV 58 P RL+GHE E L+ SGR+HHA L G GIGKATL +R+A G Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 Q+ + +P+ + P P +++A+ D L + + + + RT I VD++R I Sbjct: 66 SQHEKKADSPLWLS---PEHPVFRRVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREI 122 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 FL LT G WRV+++D D +NR+AANALLK LEEPP + + +L + +L TIR Sbjct: 123 ASFLHLTPAEGGWRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTIR 182 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC ++ +L + L L ++RD + A G+ RA+++ D + Sbjct: 183 SRCRMLRLQALEAAPMQDVLATLLPDLAAAERDLLAGLAEGAPGRALQLAKEDGLALSRL 242 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ---- 294 D++ P + +AD L D AF + + + + + AA SG Sbjct: 243 AEDILRAP---PSASHRYDLADMLTKGD--TAFSTFMLLLRATLARMVRQAARSGSGSDE 297 Query: 295 ---LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 L D + ++ +L + ++LD+RQ IF LS Sbjct: 298 FLCLRPLDAWSDVWHALGRLQDETERFHLDKRQAIFAGLS 337 >gi|56697579|ref|YP_167948.1| DNA polymerase III subunit delta' [Ruegeria pomeroyi DSS-3] gi|56679316|gb|AAV95982.1| DNA polymerase III, delta prime subunit, putative [Ruegeria pomeroyi DSS-3] Length = 373 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 14/313 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS-- 65 P RLFG + E+ Y S R+HH L G +G+GKATL +R A +L P S Sbjct: 17 PRETPRLFGQDAAEQAFLSAYGSDRLHHGWLLTGPEGVGKATLAWRIARFLLATPPQSDD 76 Query: 66 -----KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + DP P ++M + A ++ SLN G+ R I V+++R++ Sbjct: 77 GLFGAPPPPDTLDIDPEHPVARRMQAGAEPGLAAITRSLN-DQGRLRAEIVVEDVRKLGR 135 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L TIRSR Sbjct: 136 FFGLSAADGGRRVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSR 195 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C +++ LS ++ ALEQ G + + + A GSV RA+++L+ D + + I Sbjct: 196 CRTLRLTPLSPADMQSALEQAGA-GTEVMPEHLAALASGSVGRALRLLNLDGLALYAELI 254 Query: 241 DLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA--LSGQLEE 297 L+ +PR + + +A+ ++ FD L+ I + + A++ A + Q E Sbjct: 255 ALLDTMPRLDR--PRALALAEVAAARGAAERFDLLLGLIDIALARLARSGATGMPPQPEA 312 Query: 298 ADQIAQIYFSLVK 310 A AQ+ L Sbjct: 313 AMGEAQVLARLAP 325 >gi|254469705|ref|ZP_05083110.1| DNA-directed DNA polymerase [Pseudovibrio sp. JE062] gi|211961540|gb|EEA96735.1| DNA-directed DNA polymerase [Pseudovibrio sp. JE062] Length = 353 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 18/339 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL+GHE E L Y S R HHA + G +GIGKATL FR+A +L++PD Sbjct: 22 PREQTRLYGHELAETELLDAYRSQRFHHAWILGGPKGIGKATLAFRFARFILEHPDRFST 81 Query: 68 PVRMCN-----PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 PV N P+ S + SHA D L+L + K +++ + VDE+RR F Sbjct: 82 PVMAANSLYVPPESHSAQMVAAGSHA--DLLHLRRPWDLKGKRFKRDLPVDEVRRTTGFF 139 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 TA G WR+ ++D D MN++AANALLK LEEPP++ LFIL+SH +L TIRSRC Sbjct: 140 GSTAAGGNWRICIVDSADDMNQSAANALLKILEEPPKQSLFILLSHNPGRLLPTIRSRCR 199 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L E + AL ++ G + + A GS+ +A + I + L Sbjct: 200 KLTMRKLEEPMIEHALTEMGC-GPSGNTEALHTLADGSLRQAALAANGGALDIAQEFTGL 258 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE----FILKEICKSAKAAALSGQLEEA 298 + + + AD++ ++ + A++ +E F+ ++ K A S + + Sbjct: 259 VET-ITNLDMIRAHGFADKIAARGAEDAWNTFLELARTFLSNQLRKDA-----STKPDAL 312 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + A ++ + + NLDR+Q++ L R+ + Sbjct: 313 VRWADLWEKVGRAASTADALNLDRKQVVLTFLVDLRKAS 351 >gi|146276608|ref|YP_001166767.1| DNA polymerase III subunit delta' [Rhodobacter sphaeroides ATCC 17025] gi|145554849|gb|ABP69462.1| DNA polymerase III, delta prime subunit [Rhodobacter sphaeroides ATCC 17025] Length = 373 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 154/295 (52%), Gaps = 9/295 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P LFGHE E + GR+HH L G G+GKATL +R A +L Sbjct: 15 VEGAPHPRETLALFGHERAEDEFLAAFTMGRLHHGWLITGPLGVGKATLAWRIARFLLAT 74 Query: 62 PD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P+ F P P ++MA+ + L + + K + +T ITV+E+RR Sbjct: 75 PEGGGLFDAPPPASLEVPADHPVARRMAALSEGRIFLLRRAWDEKAKRLKTQITVEEVRR 134 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ F +L+A G RV ++DP D MN +AANALLK LEEPP+ V +L+ H +L TI Sbjct: 135 MKAFFALSAADGGRRVAIVDPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTI 194 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC ++ ++LS ++ +AL + D + + A GS AI++ + + K+ + Sbjct: 195 RSRCRELRLSALSPEDMARALTAAGVEAGDPQ--ALAELAGGSAGEAIRVANLEGVKLYA 252 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L+ +PR + A K+ +AD + + F+ ++ I + + A+A L Sbjct: 253 ALVGLLSTLPRLDRA--KLVALADAASGKGAEPQFELMLTLIDLFLARVARAGTL 305 >gi|296445854|ref|ZP_06887806.1| AAA ATPase [Methylosinus trichosporium OB3b] gi|296256682|gb|EFH03757.1| AAA ATPase [Methylosinus trichosporium OB3b] Length = 358 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/340 (28%), Positives = 175/340 (51%), Gaps = 16/340 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P FGH + E+ L + GR+ A+L G +GIGKATL +R+A ++ +PD + Sbjct: 20 PRETTGFFGHAEAERELLDAFRRGRLAQAVLIGGPEGIGKATLAWRFARFLVAHPDPTSP 79 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P + P SP +++ + AL D L S N K+ K T I ++++R++ + Sbjct: 80 PAQTAASLELPPDSPVTRRIRALALPDVTLLRRSWNEKSKKHYTEIRIEDVRKLIHLFQQ 139 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ G WR+ ++D VD +NR++ANALLK +EEPP++ LF+LI+H +L TIRSRC + Sbjct: 140 SSGAGGWRIAIVDSVDDLNRSSANALLKLIEEPPERSLFLLIAHRPGRVLPTIRSRCRKL 199 Query: 185 KFNSLSENNLYKALEQLKIMGWD----SKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 L+EN + A+ L W ++ A GSV A+++L D S+ Sbjct: 200 TLAPLAENEIVAAVRALGAP-WSERSEAELAAAAARAEGSVREALRLLDGDGVAFDSALR 258 Query: 241 DLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 + +P+ ++ + +AD L +D + A++ + + + + ++ + A GQ A Sbjct: 259 GMFARLPQVDW--LAVHALADRLTGRDNESAYETFMTAVFRFLDRAVREKA--GQGAGAA 314 Query: 300 QI---AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + A+ + + + +YN D+R +I + + E Sbjct: 315 SLVPYARAFERIDEAARDTEVYNFDKRGLILSIFADLEEA 354 >gi|91977187|ref|YP_569846.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris BisB5] gi|91683643|gb|ABE39945.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris BisB5] Length = 346 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 164/331 (49%), Gaps = 17/331 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH E+ L Y GR+ HA L G QGIGKATL +R A VL + D Sbjct: 15 PRETTALFGHHVAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLAHRDPLAD 74 Query: 68 PVRMC---NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ + DP P V+ +A+ A L L S+N K G R VITVDE R F Sbjct: 75 AVQGAASLDLDPSHPVVRHVAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETIGFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N ++ANALLK +EEPPQ+ LF+LIS++ +L TI+SRC + Sbjct: 134 TAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPARVLPTIQSRCRKL 193 Query: 185 KFNSLSENNLYKALEQLKIMG-WDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSY 239 L+ ++ A + D K A+ GSV+RA+ +L D K + Sbjct: 194 MLRPLATADVIAAAVAATDLAPGDPKLADAAAASEGSVSRALTLLGGDALTLHQKTTALL 253 Query: 240 IDLIHI-PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L ++ PR +AL E + + ++ + + I + +A + L Sbjct: 254 DSLPNVDPRALHAL-------GESIGGTDRATLAAFVDGVDRWIAQRLRAGDANANLPRL 306 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 ++A+++ + + YNL+R+ ++F + Sbjct: 307 ARLAEVWEKIGRAARDTEAYNLERKPLVFSV 337 >gi|154248246|ref|YP_001419204.1| DNA-directed DNA polymerase [Xanthobacter autotrophicus Py2] gi|154162331|gb|ABS69547.1| DNA-directed DNA polymerase [Xanthobacter autotrophicus Py2] Length = 347 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 23/339 (6%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-PDFSK 66 P RLFGH +E L + +GR+ HALL G +GIGKATL +R A VL P+ Sbjct: 20 PRDQARLFGHGVVEADLIGDFRAGRLPHALLIGGPEGIGKATLAYRLARMVLSGGPEAGS 79 Query: 67 APVRMCNPDPCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + P + P +Q+AS + D L L K TVI + +RR+R F T Sbjct: 80 HSLDL----PVTHPVFRQVASQSHPDLLVLHRVPEAGEEKIPTVIPAEMVRRVRSFFGAT 135 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A G WRV ++D VD +N ANALLK+LEEPP + LF+LISHA +L TIRSR ++ Sbjct: 136 AAAGGWRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSRTRLLR 195 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSYID- 241 L ++ AL+ LK D + AA GSV RAI + + ++ S+ + Sbjct: 196 MRPLGSADVLAALDHLKEEMADLDAATLPSAAEASGGSVRRAIVLARGEGMEVRSATLKA 255 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD-- 299 L +PR + + + L D+ D IE + S AA + Q +E Sbjct: 256 LEQLPRPRP--EDLHALGAR-LQGDRSDGLDLFIEAV------SDYVAARATQGDEPRHR 306 Query: 300 --QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ +++ + + ++NLDR+ ++F + + E Sbjct: 307 LVRLGEVWEKVRRSAREADVFNLDRKALVFRVFADLAEA 345 >gi|255263160|ref|ZP_05342502.1| DNA polymerase III subunit delta' [Thalassiobium sp. R2A62] gi|255105495|gb|EET48169.1| DNA polymerase III subunit delta' [Thalassiobium sp. R2A62] Length = 375 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/365 (31%), Positives = 177/365 (48%), Gaps = 38/365 (10%) Query: 2 IDRAFDPVYNQRLFG-HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 I+ A P RL G +E + +FL Y +GR+HHA + G +G GKATL ++ A +L Sbjct: 12 IEGAPHPRETARLLGQNEAVAEFL-DAYATGRLHHAWMITGPKGTGKATLAWKIATFLLA 70 Query: 61 NPD-----FSKAPVRMCNPD--PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 F + P + D P +P + +A+ A L ++N TGK R ITVD Sbjct: 71 ETGDDGGFFGETPPAPTSLDVSPDAPDARLIAAGAHPRLTVLRRAVNKDTGKLRAQITVD 130 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 E+R+++ F ++A G RV ++D D MN NAANALLK LEEPP ILI+H + Sbjct: 131 EVRKLKGFFEMSAADGGRRVAIVDAADEMNVNAANALLKVLEEPPVDATLILIAHQPSRL 190 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L TIRSRC +++ N+L + AL+Q I ++ + A GSV A++++ D Sbjct: 191 LPTIRSRCRTLRANTLPPETIAAALDQAGIT--TNEAPALGALAQGSVGEAMRLITMDG- 247 Query: 234 KIISSYIDLIH----IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 ++ Y DLI +PR + + ++AD +D +++ + ++A+A Sbjct: 248 --LALYGDLIKLFTGLPRVDRTIA--LKLADSAAGVRNVNRYDMILDLFDAFLVRTARAG 303 Query: 290 --------ALSGQLE----------EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 A SG+ + A AQ+ L RV NLD +I ++ Sbjct: 304 LIGPPETQAASGEAQLMARLAPHDAAARHWAQLQQDLSDRVRHGRAVNLDPAALILDMIF 363 Query: 332 KAREC 336 K E Sbjct: 364 KIEET 368 >gi|254500518|ref|ZP_05112669.1| hypothetical protein SADFL11_554 [Labrenzia alexandrii DFL-11] gi|222436589|gb|EEE43268.1| hypothetical protein SADFL11_554 [Labrenzia alexandrii DFL-11] Length = 355 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 105/335 (31%), Positives = 165/335 (49%), Gaps = 11/335 (3%) Query: 8 PVYNQR--LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 P+ +QR L GH + E L Y S R+HHA + G +GIGKATL FR+A VL +PD Sbjct: 20 PLPHQRNVLIGHGETETSLLDAYRSERLHHAWILGGPKGIGKATLAFRFAKFVLAHPDRF 79 Query: 66 KAPVRMCN----PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 M P+ P V+Q+A+ + L+L + K +++T + VDE+RR F Sbjct: 80 GPQAAMAQDLSVPED-HPVVRQVAAGGHPNILHLRRPWDDKGKRFKTDLPVDEVRRTVSF 138 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA+ WRV ++D D MN ++ANALLK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 139 FGTTASARAWRVCIVDAADDMNASSANALLKILEEPPERCLFLVLSHAPGRLLPTIRSRC 198 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 + LSE ++ L L +IA A GS+ A+ +L D I Sbjct: 199 RRLDLAPLSETDIANGLRDLAGHAIPDASGLSEIARTADGSLRAALTLLAGDGLAITQGT 258 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L Q L+ + ++D + ++ Q ++ + + + +++ A Sbjct: 259 RKLAEAGSQ-MDLKALHALSDLVAARGQTDNWESF-QHVAETWLHGQMRGSIAAGTGAAY 316 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +++ K + NLDR+Q++ K R Sbjct: 317 AYVKLWEGTRKAIAESDALNLDRKQVVLDFFLKLR 351 >gi|254486633|ref|ZP_05099838.1| DNA polymerase III subunit delta [Roseobacter sp. GAI101] gi|214043502|gb|EEB84140.1| DNA polymerase III subunit delta [Roseobacter sp. GAI101] Length = 371 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID A P RL G E E + SG++HH L G +G+GKATL +R A +L Sbjct: 11 IDGARHPRDTPRLIGQEPAEAAFLDAFNSGKLHHGWLLTGPRGVGKATLAWRLARFLLAT 70 Query: 62 PD------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD F+ P + DP P +++A+ ++ S++ KT + R I VD+I Sbjct: 71 PDPEGGGMFAPEPPTSLDVDPDHPVARRIAAGGEGALKAVTRSVDEKTKRLRKQIVVDDI 130 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R++ F ++A G RV+++D D MN NAANALLK LEEPP + + +LISH +L Sbjct: 131 RKLNGFFQMSAADGGRRVVIVDDADLMNPNAANALLKMLEEPPARAIILLISHRPSGLLP 190 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKI 227 TIRSRC +++ +L + + +AL Q G D + D +AA GSV A+ + Sbjct: 191 TIRSRCRTLRLGTLDSDQMGQALAQ---SGVDIQGDPAALAALSGGSVGGALGL 241 >gi|154253552|ref|YP_001414376.1| DNA replication ATPase [Parvibaculum lavamentivorans DS-1] gi|154157502|gb|ABS64719.1| ATPase involved in DNA replication [Parvibaculum lavamentivorans DS-1] Length = 387 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 21/290 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFR---YAGHVLQNPDF 64 P L G E E+ L + + SGRMHHA L G +GIGKATL +R +A H Sbjct: 18 PREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEAA 77 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 A R N P Q+A+ + + L + + KT K +TVI VDE+RRI +F L Sbjct: 78 RAAGARDLNISPDEGVFHQVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFFGL 137 Query: 125 TANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA G WRV++ID D MN N+ANALLK+LEEPP LF+++SH +L TIRSRC + Sbjct: 138 TATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCRT 197 Query: 184 IKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAY----------GSVARAIKILH 229 ++ L+E ++ +E Q + ++KR F A GS RA+ I Sbjct: 198 LRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALSIAA 257 Query: 230 YDCDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + L+ +PR + A + AD+ + A++ +IE + Sbjct: 258 GGGLGLYKELAGLLAGLPRLDIA--AVHAFADKAGRKGADDAYETMIELL 305 >gi|85715532|ref|ZP_01046513.1| DNA polymerase III subunit delta [Nitrobacter sp. Nb-311A] gi|85697727|gb|EAQ35603.1| DNA polymerase III subunit delta [Nitrobacter sp. Nb-311A] Length = 346 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 168/325 (51%), Gaps = 9/325 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH + E+ L Y GR+ HA L G GIGKATL +R A VL + D + + Sbjct: 15 PRETAVLFGHGEAERTLLDAYRGGRIPHAWLIGGAPGIGKATLAYRMARFVLAHGDPAMS 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ D P + +A+ L L + N K G RTVI+V++IR F Sbjct: 75 DVQSAETLKLDLAHPVARGVAAGTHGGLLTLERTPNEK-GIMRTVISVEQIRETISFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N NAANALLK LEEPP + LF L+SHA +L+T++SRC + Sbjct: 134 TATGNGWRVCIVDTVDELNPNAANALLKVLEEPPHRSLFFLVSHAPVRVLATMQSRCRKL 193 Query: 185 KFNSLSENNLYK-ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 L+ +++ + A + I D+ V AA GSVARA+ +L K+ + L+ Sbjct: 194 MLRPLAASDVIRAAAAAVGIAPDDASLQEVAGAAEGSVARALALLGGGALKLHQRTMALL 253 Query: 244 H-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 + +P+ + ++ + D + D + A I+ + + I + + ++ L ++A Sbjct: 254 NRLPQVDPG--ELHALGDAISGSD-RAALSAFIDSVDRWIGERLRTGDVNADLPRLARLA 310 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIF 327 +++ + YNL+R+ ++F Sbjct: 311 EVWEKINTAARETETYNLERKPLVF 335 >gi|158423798|ref|YP_001525090.1| putative DNA polymerase III delta prime subunit [Azorhizobium caulinodans ORS 571] gi|158330687|dbj|BAF88172.1| putative DNA polymerase III delta prime subunit [Azorhizobium caulinodans ORS 571] Length = 353 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 107/338 (31%), Positives = 171/338 (50%), Gaps = 21/338 (6%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH ++E L + SGR+ H LL G +G+GKAT+ +R A VL A Sbjct: 25 PRRQDRLFGHAEVEADLMAEWRSGRLPHGLLIGGPEGVGKATMAYRIARFVLSG---GAA 81 Query: 68 PVRMCNPD-PCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P + D P S P +Q+A+ + D L L P K TVI + +R++R F T Sbjct: 82 PASQHSFDVPESHPVWRQVAALSHPDLLVLRRVPEPGEEKIPTVIPAEMVRKVRNFFGAT 141 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +G WRV ++D VD +N ANALLK+LEEPP + LF+L++HA +L TIRSR +++ Sbjct: 142 AGSGGWRVCIVDAVDDLNAFGANALLKTLEEPPPRALFLLVTHAPGRVLPTIRSRTRAVR 201 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDF--VKIAAYGSVARAIKILHYDCDKIISSY---I 240 L + AL+ L + D A+ GSV RAI + + ++ ++ + Sbjct: 202 LKPLGGAEVLAALDHLAPALALEEADLPAAAAASGGSVRRAIVLARGEGMEVRAATQRAL 261 Query: 241 DLIHIPRQE--YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + PR E +AL L D+ D +E + I A + L+G+ Sbjct: 262 EQLPQPRMEELHALGAR-------LQGDRGDGLDLFLETVSDWIAAEAT-SGLAGRARLV 313 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ +++ + + +YNLDR+ ++F + ++ E Sbjct: 314 -RLGEVWEKVRRSGAEADIYNLDRKALVFRIFTELAEA 350 >gi|300023247|ref|YP_003755858.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888] gi|299525068|gb|ADJ23537.1| AAA ATPase [Hyphomicrobium denitrificans ATCC 51888] Length = 373 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 114/193 (59%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L GH+ L+ GRMHHA L G +GIGKATL +++A L P+ Sbjct: 25 PRETLSLIGHDAALSMLTDTLAGGRMHHAWLLAGPKGIGKATLAYQFAKIALARPEERDL 84 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + + +P SP +Q+ + + L + + +PKT ++ I VDE+RR++ FL+L+A Sbjct: 85 FGQGMSIEPNSPTDRQIRALSHPGLLVIRRTYDPKTKRFSQTIPVDEVRRLKTFLALSAE 144 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 + WRV+++D D MN NAANALLKSLEEPP + +F++++ A +L TIRSRC + Sbjct: 145 SQGWRVVIVDSADDMNANAANALLKSLEEPPPRTIFLVVTSAPGRLLPTIRSRCRIAVLS 204 Query: 188 SLSENNLYKALEQ 200 LSE +L + Q Sbjct: 205 PLSEADLKRGAAQ 217 >gi|163746822|ref|ZP_02154179.1| DNA polymerase III subunit delta' [Oceanibulbus indolifex HEL-45] gi|161379936|gb|EDQ04348.1| DNA polymerase III subunit delta' [Oceanibulbus indolifex HEL-45] Length = 370 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 137/251 (54%), Gaps = 13/251 (5%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P +L G E + SG++HHA + G +G+GKATL +R A +L Sbjct: 11 VEGARHPRDTPKLIGQGAAEAAFLDAFNSGKLHHAWMLTGPRGVGKATLAWRIARFLLAT 70 Query: 62 PD-----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD F P + DP P +++A+ A ++ ++NP T + R I VD+IR Sbjct: 71 PDPDGGMFDLPPAETLDIDPEHPVARRVAAGAEAGLKSVTRTINPDTKRMRKQIVVDDIR 130 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + F ++A G RV++ID D MN NAANALLK LEEPP++ + +L+SH ++L T Sbjct: 131 ALNGFFQMSAADGGRRVVIIDDADEMNPNAANALLKMLEEPPERAILLLLSHQPSSLLPT 190 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDK 234 IRSRC +++ +L+ + + +AL G + + D +A + GSV A+++ Sbjct: 191 IRSRCRTLRLGTLNADQMAEALAG---SGVEVEGDPAALAELSGGSVGGALRLSLMGG-- 245 Query: 235 IISSYIDLIHI 245 + +Y DL+ + Sbjct: 246 -VRTYADLVGL 255 >gi|163732223|ref|ZP_02139669.1| DNA polymerase III subunit delta' [Roseobacter litoralis Och 149] gi|161394521|gb|EDQ18844.1| DNA polymerase III subunit delta' [Roseobacter litoralis Och 149] Length = 368 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P ++FG E+ + +GR+HHA L G +G+GKATL + A +L Sbjct: 7 IEGAPHPRDTLQVFGQATAEQTFLDAFATGRLHHAWLLTGPRGVGKATLAWSIARFLLAT 66 Query: 62 P--------DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P AP + DP P +++ + A + S N KTG+ R VI+VD Sbjct: 67 PLQEDDGLLGVPPAPTSLAI-DPEHPVARRIVAGAEPGLKSIIRSENEKTGRMRDVISVD 125 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR + F L+A G RV+++D D MN AANALLK LEEPP + IL SH ++ Sbjct: 126 DIRSLSSFFQLSATDGGRRVVIVDAADDMNPQAANALLKMLEEPPARATLILTSHQPSSL 185 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L TIRSRC ++ +L +++ KA Q I + +++ GSV A+++ + D Sbjct: 186 LPTIRSRCRVLRLGTLPPDDMQKAFTQAGIDPGGNAPALAELSG-GSVGAAVRLSNLDGL 244 Query: 234 KIISSYIDLIH 244 K + + LI+ Sbjct: 245 KTYAELVQLIN 255 >gi|254464615|ref|ZP_05078026.1| DNA polymerase III delta prime subunit protein [Rhodobacterales bacterium Y4I] gi|206685523|gb|EDZ46005.1| DNA polymerase III delta prime subunit protein [Rhodobacterales bacterium Y4I] Length = 372 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 155/310 (50%), Gaps = 13/310 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL G E E+ Y SGR+HH L G QG+GKATL +R A +L P + Sbjct: 19 PRETLRLIGQEAAERDFLTAYNSGRLHHGWLLTGPQGVGKATLAWRIARFLLATPPAEEG 78 Query: 68 ------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + + DP P ++ + A ++ S + K GK RT I VD++R++ F Sbjct: 79 LFGAPPPPQTLDIDPEHPVSHRIQALAEPGLAPITRSYDDK-GKLRTQIVVDDVRKLNRF 137 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+A G RV+++D D MN +AANALLK LEEPP + +LISH +L TIRSRC Sbjct: 138 FGLSATDGGRRVVIVDAADDMNVSAANALLKMLEEPPARTTILLISHQPSRLLPTIRSRC 197 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 +++ LS ++ AL Q + + + +A GSV A+++++ KI + + Sbjct: 198 RTLRLGPLSAPDMEAALAQSGVELPQNMENLAALAG-GSVGAALRLINLGGLKIYAELVQ 256 Query: 242 LI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ--LEEA 298 ++ +PR + Q+ +A+ + F+ L+ + + A+ A LE A Sbjct: 257 ILDSMPRLDR--QRAMALAEAAAQRGAAERFELLLSLTEMALARLARTGATGAPPALEAA 314 Query: 299 DQIAQIYFSL 308 Q A + L Sbjct: 315 PQEAAMLARL 324 >gi|83943050|ref|ZP_00955510.1| DNA polymerase III subunit delta [Sulfitobacter sp. EE-36] gi|83846058|gb|EAP83935.1| DNA polymerase III subunit delta [Sulfitobacter sp. EE-36] Length = 371 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 13/235 (5%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID A P +LFG E + SG++HH L G +G+GKATL +R A +L Sbjct: 11 IDGARHPRDTPQLFGQSAAEAAFLDAFNSGKLHHGWLLTGPRGVGKATLAWRIARFLLAT 70 Query: 62 PDF-------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 PD + AP + + DP P +++A+ ++ S++ KT + R I VD+ Sbjct: 71 PDAEDGGMFDTPAPTSL-DIDPDHPVARRIAAGGEGALKAITRSVDEKTKRLRKQIVVDD 129 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR++ F ++A G RV+++D D MN NAANALLK LEEPP + + +LISH +L Sbjct: 130 IRKLNGFFQMSAADGGRRVVIVDDADLMNPNAANALLKMLEEPPARAIMLLISHRPSGLL 189 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKI 227 TIRSRC +++ +L+ +++ +AL Q ++ D + D +AA GSV A+ + Sbjct: 190 PTIRSRCRTLRLGTLTPDDMAQALGQSEV---DIQGDPAALAALSGGSVGGALSL 241 >gi|83954239|ref|ZP_00962959.1| DNA polymerase III subunit delta [Sulfitobacter sp. NAS-14.1] gi|83841276|gb|EAP80446.1| DNA polymerase III subunit delta [Sulfitobacter sp. NAS-14.1] Length = 371 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 11/234 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID A P +LFG E + SG++HH L G +G+GKATL +R A +L Sbjct: 11 IDGARHPRDTPQLFGQSAAEAAFLDAFNSGKLHHGWLLTGPRGVGKATLAWRIARFLLAT 70 Query: 62 PD------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD F+ + DP P +++A+ ++ S++ KT + R I VD+I Sbjct: 71 PDAEDGGMFAPPTPTSLDIDPDHPVARRIAAGGEGALKAITRSVDEKTKRLRKQIVVDDI 130 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R++ F ++A G RV+++D D MN NAANALLK LEEPP + + +LISH +L Sbjct: 131 RKLNGFFQMSAADGGRRVVIVDDADLMNPNAANALLKMLEEPPARAIMLLISHRPSGLLP 190 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKI 227 TIRSRC +++ +L+ +++ +AL Q ++ D + D +AA GSV A+ + Sbjct: 191 TIRSRCRTLRLGTLTPDDMAQALGQSEV---DIQGDPAALAALSGGSVGGALSL 241 >gi|163738562|ref|ZP_02145976.1| DNA-directed DNA polymerase [Phaeobacter gallaeciensis BS107] gi|161387890|gb|EDQ12245.1| DNA-directed DNA polymerase [Phaeobacter gallaeciensis BS107] Length = 373 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 156/313 (49%), Gaps = 18/313 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFG E+ + S R+HH L G QG+GKATL +R A +L P A Sbjct: 19 PRETLHLFGQAQAEQDFLTAFNSDRLHHGWLLTGPQGVGKATLAWRIAAFLLSQPPAEDA 78 Query: 68 PVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P S P + ++ + A ++ S+N K GK R I VD+IR + Sbjct: 79 GLFGAPPPATSLDIGMDHPVMHRIQALAEPGLASITRSVNDK-GKLRDQIVVDDIRALNK 137 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L TIRSR Sbjct: 138 FFGLSATDGGRRVVIVDAADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSR 197 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISS 238 C ++F LS ++ AL Q G + R +AA GSV A+++L+ + S Sbjct: 198 CRLLRFAPLSPEDMQAALTQ---AGAELPRQAEHLAALANGSVGAALRLLNLGGLQAYSD 254 Query: 239 YIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK--AAALSGQL 295 + L+ +PR + Q+ +A++ ++ F+ L+ I + + A+ A ++ Q Sbjct: 255 VVRLLDSMPRLDR--QRAMTLAEQAAARGGADKFELLLTLIDTALARLARTGATGMAPQP 312 Query: 296 EEADQIAQIYFSL 308 E A Q A + L Sbjct: 313 EAAPQEAAVLSRL 325 >gi|89053767|ref|YP_509218.1| DNA polymerase III subunit delta' [Jannaschia sp. CCS1] gi|88863316|gb|ABD54193.1| DNA polymerase III, delta prime subunit [Jannaschia sp. CCS1] Length = 374 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 107/356 (30%), Positives = 162/356 (45%), Gaps = 34/356 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P RLFGH E SGR+ H L G +G+GKAT +R A +L Sbjct: 12 LDGAPHPRDAARLFGHASAEAEFLTAATSGRLPHGWLLTGPKGVGKATFAWRAARFLLAT 71 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVD 113 P + P P S P ++MA+ + L ++ K K +TVITVD Sbjct: 72 PPPEDDGMFGAPPPPTSLDIAPDHPVARRMAALSEPGLFLLRRPVDEKDQKKLKTVITVD 131 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 E+R ++ F L+A G+ RV+++D D MN +AANALLK LEEPP+ + LISH + Sbjct: 132 EVRGLKGFFHLSAG-GHRRVVIVDSADEMNPSAANALLKELEEPPEGAVLFLISHRPSGL 190 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-VKIAAYGSVARAIKILHYDC 232 L TIRSRC +++FN L + +L AL Q G D + A GS AI + Sbjct: 191 LPTIRSRCRTLRFNPLGDADLADALVQ---AGADPPEGTALATLAQGSAGTAISLADQGG 247 Query: 233 DKIISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA- 290 + + L+ +P + Q ++AD + + FD + + + ++A+ A Sbjct: 248 PSLYADIAKLLGTLPNMDR--QLALRLADGAAGKANEARFDLTLSLLDMALSRAARMGAT 305 Query: 291 -----------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ + A + A + SL R NLD ++F + Sbjct: 306 GQAPDEITPNEAATLARLAPSPQHAREWASLAQSLTARARRGKAVNLDPAALVFDI 361 >gi|75675655|ref|YP_318076.1| DNA polymerase III subunit delta' [Nitrobacter winogradskyi Nb-255] gi|74420525|gb|ABA04724.1| DNA polymerase III, delta prime subunit [Nitrobacter winogradskyi Nb-255] Length = 346 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 166/333 (49%), Gaps = 25/333 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH + E+ L Y SGR+ HA L G GIGKATL +R A VL + D + Sbjct: 15 PRETTALFGHGEAERTLLDAYRSGRIPHAWLIGGAPGIGKATLAYRMARFVLAHADPATP 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ D P ++ +A+ L L +LN K G RTVI+V++ R F Sbjct: 75 RVQSAETLELDLMHPAIRHVAADTHGGLLTLERTLNEK-GVMRTVISVEQTRETIAFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++DPVD +N NAANALLK LEEPP + LF LISHA +L+T++SRC + Sbjct: 134 TATGNGWRVCIVDPVDELNPNAANALLKVLEEPPHRSLFFLISHAPARVLATMQSRCRKL 193 Query: 185 KFNSL--SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI-------LHYDCDKI 235 L S+ A S R+ V AA GSVARA+ + LH + Sbjct: 194 MLRPLAASDVISAAAAAAGIAPDDASLRN-VAGAAEGSVARALALLGGGALKLHQRTTAL 252 Query: 236 ISSYIDLIHI-PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 ++ +L HI P + +AL + +S + A I+ + + + + + + + Sbjct: 253 LN---NLPHIDPGELHAL-------GDAISGSDRAALGAFIDSVDRWMGERLRISDANAD 302 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 L ++A+++ + YNL+R+ ++F Sbjct: 303 LPRLARLAEVWEKINNTARETETYNLERKPLVF 335 >gi|39935843|ref|NP_948119.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris CGA009] gi|192291491|ref|YP_001992096.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris TIE-1] gi|39649697|emb|CAE28218.1| probable DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris CGA009] gi|192285240|gb|ACF01621.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris TIE-1] Length = 351 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 9/327 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L+GH E+ L Y GR+ HA L G QGIGKATL +R A VL + + Sbjct: 20 PRETTELYGHHAAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHREPQSD 79 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ DP P + +A+ A L L S+N K G R VITVDE R F Sbjct: 80 AVQSAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETISFFGA 138 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N N+ANALLK +EEPPQ+ LF+L+S+A +L TI+SRC + Sbjct: 139 TAAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARVLPTIQSRCRKL 198 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 L+ ++ A + D + A+ GSVARA+ ++ + + L+ Sbjct: 199 MLRPLATADVIAAAADAAGVERDDPQLGEAAAASEGSVARALMLMGGGALTLQQTTTALL 258 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 +P + + + + D + D+ F ++ + + + + + +L ++A Sbjct: 259 DSLPNVDP--RALHALGDAIGGTDRATLAAF-VDGVDRWVAARLRTPDPNAELPRLARLA 315 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +++ + + YNL+R+ ++F + Sbjct: 316 EVWEKIGRAARDTEAYNLERKPLVFSV 342 >gi|260426980|ref|ZP_05780959.1| DNA polymerase III subunit delta' [Citreicella sp. SE45] gi|260421472|gb|EEX14723.1| DNA polymerase III subunit delta' [Citreicella sp. SE45] Length = 372 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 10/251 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RLFG + E+ Y SGR+HH L G +G+GKATL +R A +L Sbjct: 12 VEGAPHPRETVRLFGQDRAEQDFLSAYTSGRLHHGWLITGPKGLGKATLAWRIARFLLAT 71 Query: 62 PDF-------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P+ + P P P +++ + + L S + K + +T +TVDE Sbjct: 72 PEAQDDGLFGAPPPPETLGIAPDHPVMRRTLALSEPGLFLLRRSWDDKAKRLKTQLTVDE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+++ F +L++ G RV+++D +D +N +AANA+LK LEEPP + + ++ISH +L Sbjct: 132 VRKLKGFFTLSSAEGGRRVVIVDSMDELNVSAANAILKLLEEPPARTVLLMISHQPSRLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC ++ L ++ +AL Q + + A GSV A+++L++D K Sbjct: 192 PTIRSRCRELRLGPLDPEDMARALGQAGAEVRTDEAQALSALAAGSVGAALRLLNHDGLK 251 Query: 235 IISSYIDLIHI 245 + Y DL+ + Sbjct: 252 L---YADLVRL 259 >gi|209885249|ref|YP_002289106.1| DNA polymerase III subunit delta [Oligotropha carboxidovorans OM5] gi|209873445|gb|ACI93241.1| DNA polymerase III subunit delta [Oligotropha carboxidovorans OM5] Length = 347 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/321 (34%), Positives = 163/321 (50%), Gaps = 9/321 (2%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 L+GH E L Y SG + HA L G QGIGKATL +R A VL NPD + A V+ Sbjct: 22 LYGHAAAEAALLTAYKSGHIPHAWLIGGVQGIGKATLAYRMARFVLANPDPASAKVQEAV 81 Query: 73 --NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D P +Q+A+ + L L S N K G R+VITVDE R F TA Sbjct: 82 SLQVDAPYPVARQIAAGSHGGMLTLERSANDK-GVMRSVITVDESRETISFFGSTAAAEG 140 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL- 189 WRV ++D VD +N NA+NALLK LEEPP + LF+L+S+ +L+TI+SRC + SL Sbjct: 141 WRVCIVDTVDELNANASNALLKILEEPPARSLFLLVSNMPSRVLATIQSRCRKLMLRSLA 200 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI-PRQ 248 +E + A E L+I D A GSVA + ++ + + L+ I P+ Sbjct: 201 TEEVIAAAAEALQIDPSDQALREAAETAEGSVAHTLTLMGGEALGLQQRTTALLDILPQL 260 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 ++ + + + D L D + A +IE I + + + L L + A+++ + Sbjct: 261 DH--RALHALGDALPLND-RAALRTVIETIERWLSARLRDDELQSDLPRLARFAEVWEKM 317 Query: 309 VKRVHAFSMYNLDRRQMIFHL 329 K +NL+R+ ++F + Sbjct: 318 GKAARDTESFNLERKPLVFSV 338 >gi|170744324|ref|YP_001772979.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46] gi|168198598|gb|ACA20545.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46] Length = 347 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 157/322 (48%), Gaps = 15/322 (4%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E E+ + +GR+HHA L G +GIGKATL +R A H+L + P + Sbjct: 27 LIGQEAAERAFREAIGAGRLHHAWLLGGPRGIGKATLAYRVARHLLAHGAGRGLPETLAV 86 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 P+ P +Q+AS A + + L P T ITV+ RR + F +A+ GY R Sbjct: 87 PE-THPVARQVASLAHPNLVVLRRQRAPGAKTLPTQITVEAARRALHLFAETSADAGY-R 144 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D + +N +ANALLK +EEPP + LF+++SHA +L TIRSRC + L E Sbjct: 145 VCVVDCAEELNLASANALLKLIEEPPPRSLFLIVSHAPGRLLPTIRSRCRRLGLRPLGEG 204 Query: 193 NLYKALEQL-KIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + + L L + + + AA GSVARA+ +L ++ L+ P Sbjct: 205 EVVRVLRGLGEAVAAHPPEVLARAAALSEGSVARALGLLDPATLALVDEVEALLRAPDWR 264 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICK--SAKAAALSGQLEEADQIAQIYFS 307 L ++++ ++A D + EI + + A L+ E +++IA++ Sbjct: 265 RVLALAERLSGREAEALYEVALDTAQRHLAAEIGRRLAEPPARLAALAEASERIARV--- 321 Query: 308 LVKRVHAFSMYNLDRRQMIFHL 329 + YNLDRR +I L Sbjct: 322 ----AREAATYNLDRRPVILSL 339 >gi|254512025|ref|ZP_05124092.1| DNA polymerase III subunit delta [Rhodobacteraceae bacterium KLH11] gi|221535736|gb|EEE38724.1| DNA polymerase III subunit delta [Rhodobacteraceae bacterium KLH11] Length = 373 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 164/361 (45%), Gaps = 35/361 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P RLFG E+ Y S R+HH L G +G+GKATL +R A +L P Sbjct: 14 ALHPRETVRLFGQGAAEQAFLNAYTSDRLHHGWLLSGPRGVGKATLAWRIARFLLATPAV 73 Query: 65 -------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P DP P ++ + A ++ S+N G+ R I VD+IR+ Sbjct: 74 EEDGLFGAPPPPDTLEIDPDHPVAHRILAGAEPGLAAITRSVN-DQGRLRNEIVVDDIRK 132 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + F L++ G RV+++D D MN +AANALLK LEEPP +LISH +L TI Sbjct: 133 LGRFFGLSSADGGRRVVIVDAADEMNVSAANALLKMLEEPPAHTTLLLISHQPSRLLPTI 192 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWD--SKRDFVKIAAYGSVARAIKILHYDCDKI 235 RSRC +++ + L ++ AL Q G D + + A GSV A+++++ ++ Sbjct: 193 RSRCRTLRLSPLGAEDMQAALAQ---TGADLTGQPGHLAALAAGSVGDAVRLINLGGLEL 249 Query: 236 ISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA---- 290 + I ++ +PR + Q+ ++A+ + FD L+ I + + A A Sbjct: 250 YAELIGILGTLPRLDR--QRALKLAETAAQRGAAERFDLLLSLIDIALARLALTGATGAA 307 Query: 291 ---------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 LSG +A Q A+ + R NLD ++ + K +E Sbjct: 308 PQPEAAPNEAETLARLSGSPHQARQWAEAAALITSRARHGQAVNLDPASLVLDTVFKIQE 367 Query: 336 C 336 Sbjct: 368 T 368 >gi|209542216|ref|YP_002274445.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] gi|209529893|gb|ACI49830.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] Length = 323 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 160/324 (49%), Gaps = 22/324 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G ++ + +GR+HHA L G +GIGKAT+ F A +L+ D Sbjct: 11 LVGQQEARRAFEDALRTGRLHHAWLLTGTEGIGKATMAFWMARLLLKGTD---------- 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P SP +++A+ + D L ++ ++ K + R I D++R I FL TA WRV Sbjct: 61 --PDSPAARRIAAGSHADLLTIARGVDEKRQRLRAEIVADDVRPIGQFLHRTAAEDGWRV 118 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++D + MNR+AANA+LK LEEPP + + IL +L TIRSRC ++K LS + Sbjct: 119 VIVDGAEYMNRSAANAILKLLEEPPPRAILILTCATPGRLLPTIRSRCRTLKLGPLSPAD 178 Query: 194 LYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA 251 ++ L ++ + D ++ A+GS RA+ +L D + + ++ P A Sbjct: 179 MHAVLST--VVEDAAPDDIARVVPLAHGSPGRALALLAGDGGALGALVARVMDAPAGPGA 236 Query: 252 LQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE--ADQIAQIYFS 307 ++ +M +IA+ +L ++ F + + I +AA E AD++ ++ Sbjct: 237 MREGEMYEIAEAVLKREN--GFSVFFDLLCDAISVRTRAAVRGTIPAERPADRMVDLWRR 294 Query: 308 LVKRVHAFSMYNLDRRQMIFHLLS 331 LV +NLD+ Q I L+ Sbjct: 295 LVHLRAETEQFNLDKHQAILSGLT 318 >gi|83949597|ref|ZP_00958330.1| DNA polymerase III subunit delta [Roseovarius nubinhibens ISM] gi|83837496|gb|EAP76792.1| DNA polymerase III subunit delta [Roseovarius nubinhibens ISM] Length = 371 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 156/320 (48%), Gaps = 19/320 (5%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RL G + ++ + SGR+HH L G +G+GKATL ++ A +L Sbjct: 11 VEGAPHPRETARLIGQDAAQRAFLDAFTSGRLHHGWLITGPRGVGKATLAWQIARFLLAT 70 Query: 62 P---------DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 P P + P P P ++ + + F +++ +NP TG+ R +I Sbjct: 71 PAPGADDGLFGAPPPPESLAIP-PDHPVATRLLAGSEPGFYHITRRVNPDTGRLRPMIVA 129 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 +++R + FL L+A G RV++ID D MN AANALLK LEEPP + +++SH Sbjct: 130 EDVRELNRFLQLSATEGGARVVLIDSADEMNVQAANALLKMLEEPPARTTILMVSHQPAR 189 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYD 231 +L TIRSRC ++ +LS ++ +AL Q G ++ R + + A GSV A+++ + Sbjct: 190 LLPTIRSRCRELRLGALSPEDMAEALTQ---AGAETDRPEALAALAAGSVGEALRLGNLG 246 Query: 232 CDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 I + I ++ +PR + A ++++ D LI + + A+ A Sbjct: 247 GLDIYAELIGILGSLPRLDRPRALRLAEAAAQRGAEERL--DLLITLFDTALSRLARTGA 304 Query: 291 LSGQL--EEADQIAQIYFSL 308 + L E A A + L Sbjct: 305 MGQALLPEAAPDEAATFLRL 324 >gi|126736700|ref|ZP_01752439.1| DNA polymerase III subunit delta [Roseobacter sp. CCS2] gi|126713815|gb|EBA10687.1| DNA polymerase III subunit delta [Roseobacter sp. CCS2] Length = 368 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 31/352 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P ++LFG + + + +GR+H L G +G+GKATL ++ A +L NP+ Sbjct: 18 PRETRQLFGQDKAQADFLDAFGAGRLHSGWLITGPRGVGKATLAWKIATFLLSNPEAGLF 77 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + DP P + + S A + + KT K ++ ITVD +R ++ F ++A Sbjct: 78 GDPSLDVDPEHPDARLIQSGAHPRLSLIRRPWDEKTKKLKSEITVDAVRSLKSFFQMSAA 137 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G RV+++D D +NRNAANA+LK LEEPP +LI+H +L TIRSRC ++ Sbjct: 138 DGGRRVVIVDAADELNRNAANAILKELEEPPANCTILLIAHQPSRLLPTIRSRCRELRCA 197 Query: 188 SLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISSYIDLI--- 243 L+ ++L +AL Q G S++ D + A GS AI++L++D ++ Y +LI Sbjct: 198 RLNADDLQRALTQ---AGHPSEQSDSLAALAGGSAGDAIRLLNHDG---LALYAELIKIF 251 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS-----GQLEE 297 IPR + ++AD + + ++ F ++ I + ++A+A L G E Sbjct: 252 DKIPRLDRP--SALRLADGCVGKANEVRFGMTLDLIDLFLSRAARAGLLGEPSAQGAPGE 309 Query: 298 ADQI-------------AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A + AQ+ L R NLD +I ++ K E Sbjct: 310 ARLLTRISPDDRAARNWAQLQQDLTDRSRHGRAVNLDPAALILDMIFKIEET 361 >gi|209964480|ref|YP_002297395.1| DNA polymerase III subunit delta' [Rhodospirillum centenum SW] gi|209957946|gb|ACI98582.1| ATPase i [Rhodospirillum centenum SW] Length = 372 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 105/360 (29%), Positives = 172/360 (47%), Gaps = 36/360 (10%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QN 61 D F P N L GHE E+ L + + SGRMHHA L G GIGKATL FR A VL Q Sbjct: 9 DDPFAPRRNPHLVGHEQAERLLLESWTSGRMHHAWLIGGPPGIGKATLAFRMARFVLKQG 68 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + A + P P + P +++A+ D L + + + K +++ + VDE Sbjct: 69 TGGNDAALFGAPPPPVTLAVDTEHPVARRIAAGGHADLLTVQRTWDEKRKRFKRDLPVDE 128 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +RRI FL LT+ G WRV+++D D MN + NALLK LEEPP + L ++ + ++L Sbjct: 129 VRRIAPFLRLTSAEGGWRVVVVDGADQMNLSGQNALLKILEEPPARSLILMAADNVGSLL 188 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 TIRSR + L E + L + + +++ ++ A GS+ RA+ + H Sbjct: 189 PTIRSRSRKLMLEPLPEATVVGLLGRYAPELDREAQTALARL-AEGSIGRALDLHHAGGL 247 Query: 234 KIISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + L+ +PR + + D++L + A+ + + ++ + + A+ A Sbjct: 248 DLYRQMLGLLETLPRLD--VLAAYGFIDKVLRGNDDAAWSAVTDLLVWWLGRLARTTA-R 304 Query: 293 GQL----------------EEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 GQL E A D+ +++ + + NLDRRQ++ + L Sbjct: 305 GQLPGEVVAGEGPLIARLVEPARRDGGLDRWVEVWENTTRLFARADSANLDRRQVLLNAL 364 >gi|288958658|ref|YP_003448999.1| DNA polymerase III subunit delta' [Azospirillum sp. B510] gi|288910966|dbj|BAI72455.1| DNA polymerase III subunit delta' [Azospirillum sp. B510] Length = 376 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 166/352 (47%), Gaps = 30/352 (8%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QN 61 + A P N L GH++ E+ L + + SGR+ HA L G GIGKATL FR+A VL Q Sbjct: 15 EEALAPRRNPDLVGHDEAERLLLEAWNSGRLPHAWLIGGTPGIGKATLAFRFARFVLAQE 74 Query: 62 PDF---------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 P APV + P P +++AS D L + + K G+ + I V Sbjct: 75 PPGDSLFGDSLGGAAPVTSLHIGPDHPVFRRVASGGHADLLTIERQRDEKKGRLKRDIAV 134 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D++RRI FL T+ G WRV +ID D MN + NA+LK LEEPP L +L+S Sbjct: 135 DDVRRIGPFLRRTSAEGGWRVAVIDGADRMNLSGLNAILKILEEPPPGALLLLVSDNPGG 194 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +L TIRSRC + L+E + L + + R + + GSV RAI + Sbjct: 195 MLPTIRSRCRKLTLKPLAEETVIDLLGRHRPDIAADDRPALARLSEGSVGRAIDLADAGG 254 Query: 233 DKIISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA--- 288 + + L+ +PR + + D+L + F+ E ++ + + A++ Sbjct: 255 LALYREMVGLLSDLPRID--IVAAHAFGDKLTRKQDDGMFETATELLVWWLARFARSLAR 312 Query: 289 -----------AALSGQLEEADQIAQI--YFSLVKRVHAFS-MYNLDRRQMI 326 AAL +L A + + + V+R+ A + NLDR+Q++ Sbjct: 313 GSWPAEVVPGEAALMTRLANARGLERWVEVWEKVQRLFARAESANLDRKQVV 364 >gi|316934062|ref|YP_004109044.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris DX-1] gi|315601776|gb|ADU44311.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris DX-1] Length = 351 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 161/327 (49%), Gaps = 9/327 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L+GH E+ L Y GR+ HA L G QGIGKATL +R A VL + D Sbjct: 20 PRETTELYGHHAAEQALLGAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHRDPQSD 79 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ DP P + +A+ A L L S+N K G R VITVDE R F Sbjct: 80 AVQGAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETISFFGA 138 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N N+ANALLK +EEPPQ+ LF+L+S+A L TI+SRC + Sbjct: 139 TAAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARTLPTIQSRCRKL 198 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 L+ ++ A + D + A+ GSVARA+ ++ + + L+ Sbjct: 199 MLRPLATADVIAAAADAAGLDRDDPQLGEAAAASEGSVARALMLMGGGALTLQQTTTALL 258 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 +P + + + + D + D+ F ++ + + + + + +L ++A Sbjct: 259 DSLPNVDP--RALHALGDAIGGTDRATLQAF-VDGVDRWVAGKLRTPDPNAELPRLARLA 315 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +++ + + YNL+R+ ++F + Sbjct: 316 EVWEKIGRAARDTEAYNLERKPLVFSV 342 >gi|162147583|ref|YP_001602044.1| putative DNA polymerase III delta' subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161786160|emb|CAP55742.1| putative DNA polymerase III delta' subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 22/324 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++ + +GR+HHA L G +GIGKAT+ F A +L+ D Sbjct: 1 MVGQQEARRAFEDALRTGRLHHAWLLTGTEGIGKATMAFWMARLLLKGTD---------- 50 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P SP +++A+ + D L ++ ++ K + R I D++R I FL TA WRV Sbjct: 51 --PDSPAARRIAAGSHADLLTIARGVDEKRQRLRAEIVADDVRPIGQFLHRTAAEDGWRV 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++D + MNR+AANA+LK LEEPP + + IL +L TIRSRC ++K LS + Sbjct: 109 VIVDGAEYMNRSAANAILKLLEEPPPRAILILTCATPGRLLPTIRSRCRTLKLGPLSPAD 168 Query: 194 LYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA 251 ++ L ++ + D ++ A+GS RA+ +L D + + ++ P A Sbjct: 169 MHAVLST--VVEDAAPDDIARVVPLAHGSPGRALALLAGDGGALGALVARVMDAPAGPGA 226 Query: 252 LQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE--ADQIAQIYFS 307 ++ +M +IA+ +L ++ F + + I +AA E AD++ ++ Sbjct: 227 MREGEMYEIAEAVLKREN--GFSVFFDLLCDAISVRTRAAVRGTIPAERPADRMVDLWRR 284 Query: 308 LVKRVHAFSMYNLDRRQMIFHLLS 331 LV +NLD+ Q I L+ Sbjct: 285 LVHLRAETEQFNLDKHQAILSGLT 308 >gi|149914152|ref|ZP_01902683.1| hypothetical protein RAZWK3B_19166 [Roseobacter sp. AzwK-3b] gi|149811671|gb|EDM71504.1| hypothetical protein RAZWK3B_19166 [Roseobacter sp. AzwK-3b] Length = 375 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 22/258 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RL G E + + SGR+HH L G +G+GKATL + A +L Sbjct: 13 VEGAPHPRETPRLIGQRAAEGAFLEAFNSGRLHHGWLITGPRGVGKATLAWAIARFLLAT 72 Query: 62 PDFSK---------APVRMCNPDPCS-----PFVKQMASHALHDFLYLSYSLNPKTGKWR 107 PD AP+ PD + P +++A+ + +++ S+N KTG+ R Sbjct: 73 PDPGSDDGGLFGDAAPM----PDSLAIPADHPVARRIAAGSDPGLFHITRSVNEKTGRLR 128 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I D++R + FL L++ G RV++ID D MN AANALLK LEEPP + + +L+S Sbjct: 129 DRIVADDVRSLNNFLHLSSTDGGRRVVLIDSADEMNTQAANALLKMLEEPPARTVLLLVS 188 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 H +L TIRSRC ++ L ++ ALEQ I +++A GSV A+++ Sbjct: 189 HQPSRLLPTIRSRCRELRLAPLGAQDMATALEQAGIAPDADATALAELSA-GSVGEAVRL 247 Query: 228 LHYDCDKIISSYIDLIHI 245 ++ ++ Y +++ I Sbjct: 248 INLGG---VAMYREIVEI 262 >gi|114570003|ref|YP_756683.1| DNA polymerase IIIsubunit delta' [Maricaulis maris MCS10] gi|114340465|gb|ABI65745.1| DNA polymerase III, delta prime subunit [Maricaulis maris MCS10] Length = 349 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 11/325 (3%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 LFGHE E+ + + SGR+HHA + G +G+GKA+L +R A VL P P+ Sbjct: 24 LFGHEAAERAFATAWDSGRLHHAWMITGPRGVGKASLAWRAARRVLGARPMPEAGPLGTS 83 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 DP K + + A D L L + K +WR ITV+E RR +F +++ G WR Sbjct: 84 AEDP---VCKVIEAQATPDLLVLRRPWDDKRKRWRGEITVEEARRAPHFFEMSSGGGGWR 140 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D D MN NAANALLK+LEEPP++ + L++H + +TIRSRC + + + Sbjct: 141 VCIVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRLALRAPDID 200 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 + LEQ A G+ RA+ ++ + +++ ++L+ + Sbjct: 201 ATAEWLEQTGGAADTGAAMAASRLAGGAPGRALALIAGGGVE-LAADVNLLVDRGAAASD 259 Query: 253 QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI--YFSLVK 310 ++++A+ L + Q+ D E + I A+ +G+ D A + + ++ Sbjct: 260 ADIRKLAERLSLKGQEEMRDLFYEVLANAIRLQARDRGEAGR----DTTAWLDCWRNINT 315 Query: 311 RVHAFSMYNLDRRQMIFHLLSKARE 335 V + LD +Q I L + R+ Sbjct: 316 LVRDANGLYLDPKQTILSALGQVRD 340 >gi|259415185|ref|ZP_05739107.1| DNA polymerase III subunit delta' [Silicibacter sp. TrichCH4B] gi|259349095|gb|EEW60849.1| DNA polymerase III subunit delta' [Silicibacter sp. TrichCH4B] Length = 373 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 129/248 (52%), Gaps = 10/248 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF--- 64 P RL+GH E + S R+HHA L G +G+GK+TL +R A +L P Sbjct: 19 PRETVRLYGHAQAEADFLHAFSSERLHHAWLIMGPRGVGKSTLAWRIARFLLATPPVEED 78 Query: 65 ----SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + DP P +M + A ++ S N K G+ R I VD+IR + Sbjct: 79 GLFGAPPPPSSLDIDPDHPVSHRMQALAEPGMAAITRSYNDK-GRMRDQIVVDDIRVLNR 137 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L++ G RV+++D D MN NAANALLK LEEPP + +LISH +L TIRSR Sbjct: 138 FFGLSSAEGGRRVVIVDSADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLPTIRSR 197 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C +++ L +++ ALEQ + +AA GSV A+++L + K+ S + Sbjct: 198 CRTLRLGPLQPDDMQAALEQAGAQLPEDPTHLAALAA-GSVGAAMRLLSLEGMKLYSELL 256 Query: 241 DLI-HIPR 247 +I +PR Sbjct: 257 AIIDSLPR 264 >gi|84683872|ref|ZP_01011775.1| DNA polymerase III subunit delta [Maritimibacter alkaliphilus HTCC2654] gi|84668615|gb|EAQ15082.1| DNA polymerase III subunit delta [Rhodobacterales bacterium HTCC2654] Length = 375 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P + L G E+ Y GR+HHA L G +G+GKATL +R A +L Sbjct: 13 IEGAPHPRETRALVGQAAAEQGFLTAYNGGRLHHAWLISGPRGVGKATLAWRIARFLLAT 72 Query: 62 PD------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 P + P + DP P V++ A L N K K I V+E+ Sbjct: 73 PADDGGMFGAPPPPDRLDIDPEHPVVRRSMQMAEPGLFVLRRGPNDKGDKLSADIRVNEV 132 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R++R F L+A+ G RV+++D D MN AANALLK LEEPP+ +L++H +L Sbjct: 133 RKLREFFGLSASDGGRRVVIVDAADEMNTQAANALLKMLEEPPRGATLLLVTHQPSRLLP 192 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TIRSRC ++ + L+ +L +A+E + ++A GSV A+++ D KI Sbjct: 193 TIRSRCRELRLSPLAPPDLARAMEAAGELPGPDAEPLGELAG-GSVGEAMRLSQLDGLKI 251 Query: 236 ISSYIDLI----HIPR 247 Y DL+ H PR Sbjct: 252 ---YQDLVSIFAHAPR 264 >gi|99078563|ref|YP_611821.1| DNA polymerase III subunit delta' [Ruegeria sp. TM1040] gi|99035701|gb|ABF62559.1| DNA polymerase III, delta prime subunit [Ruegeria sp. TM1040] Length = 373 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 10/248 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH + E + S R+HHA L G +G+GKATL +R A +L P Sbjct: 19 PRETAHLFGHAEAEAEFLSAFSSERLHHAWLIMGPRGVGKATLAWRIARFLLATPPVEDD 78 Query: 68 PVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P P S P ++ + A ++ S N K G+ R I VD+IR + Sbjct: 79 GLFGAPPPPQSLDVAPDHPVSHRILALAEPGLAAITRSYNDK-GRLRDQIVVDDIRVLNR 137 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L++ G RV+++D D MN NAANALLK LEEPP + +LISH +L TIRSR Sbjct: 138 FFGLSSAEGGRRVVIVDSADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLPTIRSR 197 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C +++ L+ +++ ALEQ D +AA GSV A+++L D K+ + Sbjct: 198 CRTLRLGPLAPDDMQTALEQAGAALPDDPTYLAALAA-GSVGAAMRLLSLDGMKLYGELL 256 Query: 241 DLI-HIPR 247 ++ +PR Sbjct: 257 AIVDSLPR 264 >gi|90424202|ref|YP_532572.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris BisB18] gi|90106216|gb|ABD88253.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris BisB18] Length = 346 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 164/335 (48%), Gaps = 25/335 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH D E+ L Y SGR+ HA L G QGIGKATL +R A VL +PD Sbjct: 15 PRETTALFGHRDAEQALLAAYRSGRIPHAWLIGGAQGIGKATLAYRMARFVLAHPDPEAP 74 Query: 68 PVR---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 VR D P + +A+ A L L +LN K G RT+I+VDE R F Sbjct: 75 AVRDAATLQVDASDPVARHIAAGAHGGLLTLERTLNDK-GVLRTMISVDEARETIGFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N NAANALLK +EEPP++ LF+LISHA +L TI+SRC + Sbjct: 134 TAAIDGWRVCVVDTVDELNANAANALLKVVEEPPRRSLFLLISHAPARVLPTIQSRCRKL 193 Query: 185 KFNSLSENNLYKALEQLKIMGWDSK-----RDFVKIAAYGSVARAIKILHYDCDKIISSY 239 L+ ++ A + DS A+ GSVAR + +L D + Sbjct: 194 LLRPLATTDVIAA----AALATDSDAADPLLAEAAAASEGSVARTLTLLGGDALNLHQRT 249 Query: 240 IDLIHI-----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 L+ PR +AL D L D ++A ++ + + + + + + Sbjct: 250 TALLDTLPNVDPRALHAL------GDALGGVD-RVALASFMDGVDRWVAERLRVDDPNAN 302 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L ++A+++ + + +NL+R+ ++F + Sbjct: 303 LPRLARLAEVWEKINRAARDTEAFNLERKPLVFSV 337 >gi|163743051|ref|ZP_02150434.1| DNA polymerase III subunit delta' [Phaeobacter gallaeciensis 2.10] gi|161383734|gb|EDQ08120.1| DNA polymerase III subunit delta' [Phaeobacter gallaeciensis 2.10] Length = 373 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 18/313 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFG E+ + S R+HH L G QG+GKATL +R A +L P A Sbjct: 19 PRETLHLFGQAQAEQDFLTAFNSDRLHHGWLLTGPQGVGKATLAWRIAAFLLSQPPAEDA 78 Query: 68 PVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P S P + ++ + A ++ S+N K GK R I VD+IR + Sbjct: 79 GLFGAPPPATSLDIGMDHPVMHRIQALAEPGLASITRSVNDK-GKLRDQIVVDDIRALNK 137 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L TIRSR Sbjct: 138 FFGLSATDGGRRVVIVDAADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSR 197 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISS 238 C ++F L+ ++ AL Q G + R +AA GSV A+++L+ + S Sbjct: 198 CRLLRFAPLNPEDMQAALTQ---AGAELPRQAEHLAALANGSVGAALRLLNLGGLQAYSD 254 Query: 239 YIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK--AAALSGQL 295 + L+ +PR + Q+ +A++ ++ F+ L+ I + + A+ A ++ Q Sbjct: 255 VVRLLDSLPRLDR--QRAMALAEQAAARGGADKFELLLTLIDTALARLARTGATGMAPQP 312 Query: 296 EEADQIAQIYFSL 308 E A Q A + L Sbjct: 313 EAAPQEAAVLSRL 325 >gi|296116332|ref|ZP_06834948.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769] gi|295977151|gb|EFG83913.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769] Length = 321 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 162/333 (48%), Gaps = 27/333 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL GH+ + + +GR+HHA L G GIGKAT+ F A +L+ D Sbjct: 4 PRERTRLHGHDAAWQQFASVMRAGRLHHAWLLTGVDGIGKATMAFMMARALLKAHD---- 59 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P SP +++ + D L ++ ++ KT + R I D++R I FL TA Sbjct: 60 --------PDSPVGRRITAGTHADLLVIARGVDDKTRRPRREIVGDDVRPIGAFLRRTAA 111 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G WRV+++D + MNR A+NA+LK LEEPP + IL A +L TIRSRC ++ Sbjct: 112 EGGWRVVIVDGAEYMNRTASNAILKILEEPPAGAILILTCAAPGRLLPTIRSRCRTLDLG 171 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK---IISSYIDLIH 244 LS +L+ L + + + + + ++GS RAI +LH D K +++ +D Sbjct: 172 PLSAYDLHAVLTDVVDDAYRADIENIIPLSHGSAGRAISLLHRDGIKLSALVAQVMDGQD 231 Query: 245 IPRQEYALQKMQQIADELLSQDQKIA--FDFLIEFI---LKEICKSAKAAALSGQLEEAD 299 Y +IA + + + FD L + I +E+ ++ + S + + Sbjct: 232 GGTDAY------RIASSITESENGFSVFFDLLCDAISVRTRELLRAPQGQGQSRDMRP-E 284 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 ++A + LV+ +NLD++Q + L++ Sbjct: 285 RMADAWQDLVRLRAETENFNLDKQQALLTALAR 317 >gi|86136160|ref|ZP_01054739.1| DNA polymerase III subunit delta [Roseobacter sp. MED193] gi|85827034|gb|EAQ47230.1| DNA polymerase III subunit delta [Roseobacter sp. MED193] Length = 378 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 129/249 (51%), Gaps = 13/249 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P +LFG + E+ + S R+HH L G QGIGKATL +R A +L P + Sbjct: 25 PRETLKLFGQDQAEQDFLTAFNSNRLHHGWLLTGPQGIGKATLAWRIARFLLAPPAAEEG 84 Query: 68 PVRMCNP------DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P DP P ++ + A +S S N K GK R I VD+IR++ F Sbjct: 85 LFGAPPPATSLLIDPEHPVSHRIQALAEPGLAAISRSYNDK-GKLRDQIVVDDIRKLNRF 143 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L++ G RV+++D D MN +AANALLK LEEPP + +LISH +L TIRSRC Sbjct: 144 FGLSSTDGGRRVVIVDAADDMNTSAANALLKMLEEPPARTTLLLISHQPSRLLPTIRSRC 203 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISSY 239 +++ L ++ AL Q G D + +AA GSV A+++L+ + KI + Sbjct: 204 RTLRLGPLDAEDMQSALVQ---AGADLPENTSHLAALAAGSVGAALRLLNLNGLKIYAEL 260 Query: 240 IDLIH-IPR 247 + + +PR Sbjct: 261 VQTLDTLPR 269 >gi|114762659|ref|ZP_01442093.1| DNA polymerase III subunit delta [Pelagibaca bermudensis HTCC2601] gi|114544569|gb|EAU47575.1| DNA polymerase III subunit delta [Roseovarius sp. HTCC2601] Length = 372 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 135/251 (53%), Gaps = 10/251 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RLFG + E+ Y +GR+HH L G +G+GKATL +R A +L Sbjct: 12 VEGAPHPRETVRLFGQDRAEQDFLTAYTTGRLHHGWLLTGPKGLGKATLAWRIARFLLAT 71 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P+ + P P + P +++ + + L + + K + +T +TVDE Sbjct: 72 PEQEDDGLFGAPPPPETLEIGADHPVMRRTLALSEPGLFLLRRAWDDKAKRLKTQLTVDE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+++ F +L++ G RV+++D +D +N +AANA+LK LEEPP + ++++H +L Sbjct: 132 VRKLKGFFTLSSAEGGRRVVIVDSMDELNTSAANAILKLLEEPPARTTLLMVAHQPSRLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC ++ L ++ +AL Q + + + GSV A+++L++D K Sbjct: 192 PTIRSRCRELRLAPLDTEDMARALGQAGAEVAATDAQALAALSSGSVGAAMRLLNHDGLK 251 Query: 235 IISSYIDLIHI 245 + Y DL+H Sbjct: 252 L---YADLVHT 259 >gi|83593037|ref|YP_426789.1| DNA polymerase III subunit delta' [Rhodospirillum rubrum ATCC 11170] gi|83575951|gb|ABC22502.1| DNA polymerase III, delta prime subunit [Rhodospirillum rubrum ATCC 11170] Length = 374 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 12/300 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA--------GHVL 59 P L GHE E+ + + SGR HA L G +GIGKATL FR+A Sbjct: 15 PRLTADLLGHEAAEREILETCASGRAAHAWLISGPRGIGKATLAFRFARFALAGGLEGGE 74 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG-KWRTVITVDEIRRI 118 + AP + DP P +++A+ + D + L TG + R I + ++R + Sbjct: 75 GGLFGALAPASLAM-DPAHPVFRRVAAGSHGDLRVIERGLAEGTGGRRRGEIVIGDVRDL 133 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F+ +T + G WRV+++D + MNRNAANALLK LEEPP + L +L+SH +L TIR Sbjct: 134 GGFMRMTPSEGGWRVVIVDGAEDMNRNAANALLKGLEEPPGRALLLLVSHNPARLLPTIR 193 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC + L L +E+ +++R + A GS+ RA+ + + Sbjct: 194 SRCRRLALRPLEPAVLATLIERSLPELAETERPGLIGLAEGSIGRAMDLAAMGGLALCRE 253 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQK-IAFDFLIEFILKEICKSAKAAALSGQLEE 297 I L+ + + ++ AD+ D+ A L + L + + A +G EE Sbjct: 254 MIGLLATA-PAFDVARLHGFADQAARDDRAFTATAGLFPWWLARMIRRGAVAGSAGTAEE 312 >gi|326403064|ref|YP_004283145.1| putative DNA polymerase III subunit delta' [Acidiphilium multivorum AIU301] gi|325049925|dbj|BAJ80263.1| putative DNA polymerase III subunit delta' [Acidiphilium multivorum AIU301] Length = 322 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 153/333 (45%), Gaps = 26/333 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNP 62 P N L GH+D L + R+HHA L G GIGKATL FR+A +L + P Sbjct: 2 LPPRANPELRGHDDAVAELFRAATGARLHHAWLIAGPPGIGKATLAFRFARWLLAGARTP 61 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D S P R P +++A+ A D L + + K + + I VD + FL Sbjct: 62 DLSL-PAR-------DPAFRRIATGAHADLLVIERRYDEKRKRMQGEIVVDTVAAAGRFL 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LT G WRV+++D + +NRNAANALLK LEEPP + +++L+ HA +L TIRSRC Sbjct: 114 RLTPGEGGWRVVIVDGAEALNRNAANALLKLLEEPPARAIWLLVCHAPGRLLPTIRSRCR 173 Query: 183 SIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + L + L AL L +R + A GS+ RA+ + D + Sbjct: 174 RLDLDPLPADTVSSLLAAALPDLPA----ERRTALAALAEGSIGRALSLADADGLALAGL 229 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIA-FDFLIEFILKEICKSAKAAALSGQLEE 297 + + P + IAD + D A F L+ L ++A A S L+ Sbjct: 230 VGEALAGPLPP---ARDAAIADTIARADDGFATFADLLRAALATETRAAARAKPSPALDG 286 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 ++ Q + + V NLD R + +L Sbjct: 287 RARLWQDFGRIAAEVDGL---NLDPRAAVLTML 316 >gi|115524872|ref|YP_781783.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris BisA53] gi|115518819|gb|ABJ06803.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris BisA53] Length = 348 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 168/328 (51%), Gaps = 22/328 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 LFGH + E+ L Y GR+ HA L G QGIGKATL +R A VL +PD + V+ Sbjct: 22 LFGHREAEQKLLDAYRGGRIAHAWLLSGPQGIGKATLAYRMARFVLAHPDPAAPAVQNAT 81 Query: 74 P---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTG 129 P P V+ +++ + L L LN K TVI V+E R I +F S +A G Sbjct: 82 SLALPPDHPVVQHVSAGSHGGLLTLERVLNDKGTALNTVIRVNEARETIGFFGSTSAEEG 141 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 WRV ++D VD +N NAANALLK +EEPP++ LF+L+SH+ +L+TI+SRC + L Sbjct: 142 -WRVCVVDTVDELNANAANALLKVVEEPPRRSLFLLVSHSPARVLATIQSRCRRLPLRPL 200 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSYIDLIHI- 245 + A + + D ++ AA GSVARA+ +L D + I L+ Sbjct: 201 PTAEVIAAAAEAAAL--DENDPLLQQAAAASEGSVARALTLLGGDALGLYQRTIALLETL 258 Query: 246 ----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 PR +AL D L D ++A I+ + + + + +A + L ++ Sbjct: 259 PNVDPRALHAL------GDALAGVD-RVALATFIDGVERWVAQQLRAGDANANLPRLARL 311 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 A+++ + + +NL+R+ ++F + Sbjct: 312 AEVWEKISRAARDTEAFNLERKPLVFSV 339 >gi|159043473|ref|YP_001532267.1| DNA polymerase III subunit delta' [Dinoroseobacter shibae DFL 12] gi|157911233|gb|ABV92666.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12] Length = 381 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 170/357 (47%), Gaps = 34/357 (9%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD---- 63 P + R+FGH E L S R+HHA L G +GIGKA+ +R A +L P Sbjct: 19 PRFATRVFGHGAAEADLLDAVASDRLHHAWLLTGPKGIGKASFAWRAARFLLATPASDPG 78 Query: 64 ---FSKAPVRMC--NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F AP + DP P +++A+ + L + KT +++ I VD R + Sbjct: 79 PSLFGDAPAAATSLDIDPDHPVARRIAALSDPRLYLLRRPYDEKTSRFKQDIPVDAARGL 138 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + F +++A G RV+++D D MN +AANALLK LEEPP + +L+ HA +L TIR Sbjct: 139 KGFFTMSAVDGGRRVVIVDAADEMNASAANALLKVLEEPPVDTVILLVCHAPSKLLPTIR 198 Query: 179 SRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 SRC +++ LSE +L AL Q L D++ + A GSV +AI + + Sbjct: 199 SRCRTLRMGPLSEPDLGDALAQALGAPLPDAELASLNALAEGSVGQAITLRDAGGPEAYG 258 Query: 238 SYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLI----EFILK----------EI 282 S + L+ +PR + ++A+ ++ + FD L+ F+ + Sbjct: 259 SLLGLMDGLPRLDR--PATLKLAESAAARGAEARFDLLLMLTETFLFRLARTGATGHPPT 316 Query: 283 CKSAKAAALSGQLEEADQIAQIY----FSLVKRVHAFSMYNLDRRQMI---FHLLSK 332 S + AAL +L Q A+ + +L+ + A NLD ++ FH L + Sbjct: 317 GASPQEAALLQRLAPTAQAARGWATAQATLLAKARAGRAVNLDPTALLLDMFHGLQE 373 >gi|307942274|ref|ZP_07657625.1| ATPase involved in DNA replication [Roseibium sp. TrichSKD4] gi|307774560|gb|EFO33770.1| ATPase involved in DNA replication [Roseibium sp. TrichSKD4] Length = 243 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 3/191 (1%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKA--PVR 70 LFGHE+ E+ L Y S R HHA + G +GIGKATL FR+A VL +P+ F +A + Sbjct: 28 LFGHEETERALLDAYRSERFHHAWILGGPKGIGKATLAFRFARFVLSHPERFGEAVQSAQ 87 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + SP +Q+A A + L+L + K+ ++++ + VDE+RR F TA+ Sbjct: 88 SLDVPSTSPVFQQVAHGAHPNALHLRRPWDEKSKRFKSDLPVDEVRRTVSFFGTTASANA 147 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 WRV ++D D MN+++ANALLK LEEPP + +F+++ HA + TIRSRC + LS Sbjct: 148 WRVCIVDAADDMNQSSANALLKILEEPPPRSVFLVLWHAPGRLSPTIRSRCRRLDMEPLS 207 Query: 191 ENNLYKALEQL 201 + ++ + + Sbjct: 208 DTHIGDGVRRF 218 >gi|254476704|ref|ZP_05090090.1| DNA-directed DNA polymerase [Ruegeria sp. R11] gi|214030947|gb|EEB71782.1| DNA-directed DNA polymerase [Ruegeria sp. R11] Length = 373 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 26/322 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P +LFG E+ + S R+HH L G QG+GKATL +R A +L P A Sbjct: 19 PRETLQLFGQAQAEQDFLTAFNSDRLHHGWLLTGPQGVGKATLAWRIAAFLLSQPPAEDA 78 Query: 68 PVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P S P + ++ + A ++ S N K GK R I VD+IR + Sbjct: 79 GLFGAPPPATSLDIGMDHPVMHRIQALAEPGLASITRSENDK-GKLRDQIVVDDIRALNK 137 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L TIRSR Sbjct: 138 FFGLSATDGGRRVVIVDAADDMNISAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSR 197 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISS 238 C ++F L ++ AL Q G + +AA GSV A+++L+ +++ Sbjct: 198 CRLLRFAPLGPQDMQAALAQ---AGAELPEQTTHLAALANGSVGAALRLLNLGG---LTA 251 Query: 239 YIDLIHI----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 Y DLI + PR + Q+ +A++ ++ F+ L+ I + + A+ A +GQ Sbjct: 252 YSDLIRLLDSMPRMDR--QRAMALAEQAAARGGAEKFELLLTLIDTALARLARTGA-TGQ 308 Query: 295 ---LEEADQIAQIYFSLVKRVH 313 E A Q I L H Sbjct: 309 PPMPEAAPQEGAILSRLSPTPH 330 >gi|148259981|ref|YP_001234108.1| DNA polymerase III subunit delta' [Acidiphilium cryptum JF-5] gi|146401662|gb|ABQ30189.1| DNA polymerase III, delta prime subunit [Acidiphilium cryptum JF-5] Length = 322 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 104/335 (31%), Positives = 154/335 (45%), Gaps = 30/335 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNP 62 P N L GH+D L + R+HHA L G GIGKATL FR+A +L + P Sbjct: 2 LPPRANPELRGHDDAVAELFRAATGARLHHAWLIAGPPGIGKATLAFRFARWLLAGARTP 61 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D S P R P +++A+ A D L + + K + + I VD + FL Sbjct: 62 DLSL-PAR-------DPAFRRIATGAHADLLVIERRYDEKRKRMQGEIVVDTVAAAGRFL 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LT G WRV+++D + +NRNAANALLK LEEPP + +++L+ HA +L TIRSRC Sbjct: 114 RLTPGEGGWRVVIVDGAEALNRNAANALLKLLEEPPARAIWLLVCHAPGRLLPTIRSRCR 173 Query: 183 SIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKI 235 + + L + L AL L +R + A GS+ RA+ + D + Sbjct: 174 RLDLDPLPVDTVSSLLAAALPDLPA----ERRTALAALAEGSIGRALSLADADGLALAGL 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + + P ++ A+ M AD D F L+ L ++A A S L Sbjct: 230 VGEALAGPLPPARDAAIADMIARAD-----DGFATFADLLRAALATETRAAARAKPSPAL 284 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 + ++ Q + + V NLD R + +L Sbjct: 285 DGRARLWQDFGRIAAEVDGL---NLDPRAAVLTML 316 >gi|126729337|ref|ZP_01745151.1| DNA polymerase III subunit delta' [Sagittula stellata E-37] gi|126710327|gb|EBA09379.1| DNA polymerase III subunit delta' [Sagittula stellata E-37] Length = 372 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P LFG EK + S R+HHA L G +G+GKATL +R A +L Sbjct: 13 VEGAPHPRTTLNLFGQAQAEKDFLAAFNSQRLHHAWLLSGPRGVGKATLAWRIARFLLAT 72 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P + P P + P ++M + + L N K K +I VDE Sbjct: 73 PPQEDDGLFGAPPPPATLDITEDHPVSRRMLARSEPGLFLLRRGPNDKGDKLSDLIRVDE 132 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R++ F +L++ G RV+++D D MN AANALLK LEEPP + +LISH +L Sbjct: 133 VRKLFNFFALSSADGGRRVVIVDSADEMNTQAANALLKMLEEPPARATLLLISHQPARLL 192 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 TIRSRC +++ L E ++ AL+Q +I + + + GSV A+++ + D Sbjct: 193 PTIRSRCRTLRLGPLEEGDMRAALDQARIDIPAEDTLAMTMLSEGSVGTAVRLFNQD 249 >gi|126739767|ref|ZP_01755458.1| DNA polymerase III subunit delta' [Roseobacter sp. SK209-2-6] gi|126718999|gb|EBA15710.1| DNA polymerase III subunit delta' [Roseobacter sp. SK209-2-6] Length = 378 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 9/247 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF--- 64 P +LFG E E+ + SGR+HH L G GIGKATL +R A +L P Sbjct: 25 PRETLQLFGQEKAEQSFLDAFNSGRLHHGWLLTGPLGIGKATLAWRIARFLLATPPAEDG 84 Query: 65 ---SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P DP P ++ + A +S S N K GK R I VD+IR + F Sbjct: 85 LFGAPPPATSMQVDPEHPVSHRIQALAEPGLAPISRSYNDK-GKLRDQIVVDDIRGLNRF 143 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L++ G RV+++D D MN +AANALLK LEEPP + +LISH +L TIRSRC Sbjct: 144 FGLSSADGGRRVVIVDAADDMNVSAANALLKMLEEPPARTTILLISHQPSRLLPTIRSRC 203 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 +++ L+ ++ AL Q ++ D + + GSV A+++++ +I S + Sbjct: 204 RTLRLAPLTAEDMQVALAQAGAE-LPAQTDHLAALSAGSVGAALRLINLGGLRIYSELVQ 262 Query: 242 LI-HIPR 247 + +PR Sbjct: 263 IAGSMPR 269 >gi|294676799|ref|YP_003577414.1| DNA polymerase III subunit delta' [Rhodobacter capsulatus SB 1003] gi|294475619|gb|ADE85007.1| DNA polymerase III, delta' subunit [Rhodobacter capsulatus SB 1003] Length = 369 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 14/306 (4%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P L+G E E + S R+HHA + G +G+GKATL +R A +L Sbjct: 12 VEGAPHPRQTLHLYGQEKAEADFLTAFTSHRLHHAWMLTGPRGVGKATLAWRLARFLLSQ 71 Query: 62 PD-------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P + PVR DP P +++ + A +L N K I V E Sbjct: 72 PLEDGGGLFGAPEPVRNLESDPEHPVCRRIMAGAEPRLFHLKRGPNDKETALSEDIRVVE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R++ FL L+A G RV+++D D + ANALLK LEEPP V F+L++H +L Sbjct: 132 VRKLTSFLHLSAADGGRRVVIVDAADELATAGANALLKLLEEPPPLVTFLLVTHQPARLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-AYGSVARAIKILHYDCD 233 TIRSRC ++ +L+ +L +AL+ G +++ A A GSV AI++++ D Sbjct: 192 PTIRSRCRELRLAALAPEDLAQALQG---AGAETEDTLALSALAGGSVGEAIRLINLDGL 248 Query: 234 KIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + + L+ +PR + QK +A+ + + + FD ++ + + + A+A Sbjct: 249 EAYRALVGLMTGLPRIDR--QKAWALAEGMTGRGNEARFDLMLGLMDLFLARLARAGLTG 306 Query: 293 GQLEEA 298 EA Sbjct: 307 APQPEA 312 >gi|85706302|ref|ZP_01037396.1| DNA polymerase III, delta prime subunit, putative [Roseovarius sp. 217] gi|85669075|gb|EAQ23942.1| DNA polymerase III, delta prime subunit, putative [Roseovarius sp. 217] Length = 374 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RLFG + E + +GR+HH L G +G+GKATL +R A +L Sbjct: 13 VEGAPHPRETARLFGQDAAEAEFLDAFNTGRLHHGWLITGPRGVGKATLAWRIARFLLAT 72 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P + + P P + P +++ + + L K + I V E Sbjct: 73 PLVQEEGLFGAPPSPATLDIGPDHPVSRRLLALSDPGLFLLRRGPTDKGDRLAAEIRVSE 132 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +RR+ F +L+A G RV+++D D +N AANA+LK LEEPP + + +LISH +L Sbjct: 133 VRRLGNFFALSAADGGRRVVIVDAADELNTQAANAILKMLEEPPARTVLLLISHQPSGLL 192 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC +++ L ++ +AL+Q I +++ GSV A+++L+ K Sbjct: 193 PTIRSRCRTLRLAPLGPQDIAQALDQAGIAPEGDPAALAELSG-GSVGAAVRLLNLGGLK 251 Query: 235 IISSYIDLIH-IPR 247 + S + L+ +PR Sbjct: 252 LYSDLVGLMESLPR 265 >gi|254563521|ref|YP_003070616.1| DNA polymerase III, delta prime subunit [Methylobacterium extorquens DM4] gi|254270799|emb|CAX26804.1| DNA polymerase III, delta prime subunit [Methylobacterium extorquens DM4] Length = 360 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 162/333 (48%), Gaps = 25/333 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH E + +GR+HHA L G GIGKATL +R A ++ +P + Sbjct: 27 PREQTRLFGHGHAEAAFAGALAAGRLHHAWLIGGPAGIGKATLAYRVARRLVADPRTLPS 86 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + P+ P +Q+ + + + + L P T I+VD R TA Sbjct: 87 PDSLDVPE-DHPAARQVMALSHPNLVALRRVQAPGAKTLPTRISVDAAREALALFGATAG 145 Query: 128 T-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D + +N N+ANALLK +EEPP + +F++ISHA +L TIRSRC ++ Sbjct: 146 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIISHAPGRLLPTIRSRCRALTL 205 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIA-----AYGSVARAIKILHYDCDKIISSYID 241 +L E ++ +E+ ++ D +A GSVARA+ +L + + Sbjct: 206 RALPETDVRAIIEEFP--APFARPDAAALARAVSLCEGSVARAVALLDPATAAVETEVSA 263 Query: 242 LI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC------KSAKAAALSGQ 294 L+ +P + +++ ++A+ L +D + +++ I + + + A L Sbjct: 264 LLAGLPEPDG--RRVLKLAETLAGRDAEPLLATVLDAIQRHVAAEIDRRQGEGPARLLAL 321 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 +E A++IA ++YNLDRR ++ Sbjct: 322 VEAAERIAS-------SAREAAIYNLDRRPVVL 347 >gi|218532449|ref|YP_002423265.1| DNA-directed DNA polymerase [Methylobacterium chloromethanicum CM4] gi|218524752|gb|ACK85337.1| DNA-directed DNA polymerase [Methylobacterium chloromethanicum CM4] Length = 360 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 21/331 (6%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH E + GR+HHA L G GIGKATL +R A ++ +P + Sbjct: 27 PREQTRLFGHGHAEAAFAGALAVGRLHHAWLIGGPAGIGKATLAYRVARRLVADPRTLPS 86 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + P+ P +Q+ + + + + L P T I+VD R TA Sbjct: 87 PDSLDVPE-DHPAARQVTALSHPNLVALRRVQAPGAKTLPTRISVDAAREALALFGATAG 145 Query: 128 T-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D + +N N+ANALLK +EEPP + +F+++SHA +L TIRSRC ++ Sbjct: 146 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALTL 205 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSYIDLI 243 +L E +++ +E+ + + A GSVARA+ +L + + L+ Sbjct: 206 RALPEADVHAIIEEFPAPFARPEAAALARAVSLCEGSVARAVALLDPATAAVEAEVSALL 265 Query: 244 -HIPRQEYALQKMQQIADELLSQDQK----IAFDFLIEFILKEICK--SAKAAALSGQLE 296 +P + +++ ++A+ L +D + D + ++ EI + A L +E Sbjct: 266 AGLPEPDG--RRVLKLAETLAGRDAEPLLATVLDAIQRYVATEIDRRQGEGPARLLALVE 323 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 A++IA ++YNLDRR ++ Sbjct: 324 TAERIAS-------SAREAAIYNLDRRPLVL 347 >gi|163853587|ref|YP_001641630.1| DNA-directed DNA polymerase [Methylobacterium extorquens PA1] gi|163665192|gb|ABY32559.1| DNA-directed DNA polymerase [Methylobacterium extorquens PA1] Length = 360 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 25/333 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH E + +GR+HHA L G GIGKATL +R A ++ +P + Sbjct: 27 PREQTRLFGHGHAEAAFAGALAAGRLHHAWLIGGPAGIGKATLAYRVARRLVADPRTLPS 86 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + P+ P +Q+ + + + + L P T I+VD R TA Sbjct: 87 PDSLDVPE-DHPAARQVMALSHPNLVALRRVQAPGAKTLPTRISVDAAREALALFGATAG 145 Query: 128 T-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D + +N N+ANALLK +EEPP + +F+++SHA +L TIRSRC ++ Sbjct: 146 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALTL 205 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIA-----AYGSVARAIKILHYDCDKIISSYID 241 +L E ++ +E+ ++ D +A GSVARA+ +L + + Sbjct: 206 RALPEADVRAIIEEFP--APFARPDAAALARAVSLCEGSVARAVALLDPATAAVEADVSA 263 Query: 242 LI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC------KSAKAAALSGQ 294 L+ +P + +++ ++A+ L +D + +++ I + + + A L Sbjct: 264 LLAGLPEPDG--RRVLKLAETLAGRDAEPLLATVLDAIQRHVATEIDRRQGEGPARLLAL 321 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 +E A++IA ++YNLDRR ++ Sbjct: 322 VEAAERIAS-------SAREAAIYNLDRRPLVL 347 >gi|240141007|ref|YP_002965487.1| DNA polymerase III, delta prime subunit [Methylobacterium extorquens AM1] gi|240010984|gb|ACS42210.1| DNA polymerase III, delta prime subunit [Methylobacterium extorquens AM1] Length = 360 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 161/333 (48%), Gaps = 25/333 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RLFGH E + GR+HHA L G GIGKATL +R A ++ +P + Sbjct: 27 PREQTRLFGHGHAEAAFAGALAVGRLHHAWLIGGPAGIGKATLAYRVARRLVADPRTLPS 86 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + P+ P +Q+ + + + + L P T I+VD R TA Sbjct: 87 PDSLDVPE-DHPAARQVMALSHPNLVALRRVQAPGAKTLPTRISVDAAREALALFGATAG 145 Query: 128 T-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D + +N N+ANALLK +EEPP + +F+++SHA +L TIRSRC ++ Sbjct: 146 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALTL 205 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIA-----AYGSVARAIKILHYDCDKIISSYID 241 +L E ++ +E+ ++ D +A GSVARA+ +L + + Sbjct: 206 RALPEADVRAIIEEFP--APFARPDAAALARAVSLCEGSVARAVALLDPATAAVEAEVSA 263 Query: 242 LI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC------KSAKAAALSGQ 294 L+ +P + +++ ++A+ L +D + +++ I + + + A L Sbjct: 264 LLAGLPEPDG--RRVLKLAETLAGRDAEPLLATVLDAIQRHVAAEIDRRQGEGPARLLAL 321 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 +E A++IA ++YNLDRR ++ Sbjct: 322 VEAAERIAS-------SAREAAIYNLDRRPLVL 347 >gi|296535551|ref|ZP_06897733.1| DNA replication protein DnaC [Roseomonas cervicalis ATCC 49957] gi|296264137|gb|EFH10580.1| DNA replication protein DnaC [Roseomonas cervicalis ATCC 49957] Length = 338 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 20/311 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+HHA L G +G+GKATL +R+A +L + P+ + P +++A+ A D Sbjct: 34 RLHHAWLLAGPRGVGKATLAYRFARWLLAGRPETHPPLYL---PPEDQVFRRVAAGAHAD 90 Query: 92 FLYLSYSLNPKTGKW--RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 SL P G+ + +I VDE+R++ FL LTA G WR+++++ V+ MN A NA Sbjct: 91 L----RSLAPNAGERGVKLIIRVDEVRQVPRFLGLTAAEGGWRIVVVEQVEAMNAEAQNA 146 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK+LEEPP + L +L S A +L TIRSRC + L E + + L + + Sbjct: 147 LLKTLEEPPARALLLLTSAAPDRLLPTIRSRCRRVDLFPLPEAEMDRLLARWLPELSAGQ 206 Query: 210 RDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH-IPRQEYALQKMQQIADELLSQDQK 268 R + A G+ RA+++ D + + + +PR + + + + D L ++ Sbjct: 207 RGVLARIAGGAPGRALQLAEGDGLALQQQVEEFLSTLPRPDP--RALHALGDTLAAKRDG 264 Query: 269 IAFDFLIEFILKEICKSAKAAALSGQLEE-------ADQIAQIYFSLVKRVHAFSMYNLD 321 AF IE + +E+ + +AA + + AD A ++ +L + NLD Sbjct: 265 SAFTTFIELLRQELGLAIRAAGRGQNVPDYIHTRPLADW-AVLWDTLGRLADETETLNLD 323 Query: 322 RRQMIFHLLSK 332 R+Q + LS+ Sbjct: 324 RKQAVLSGLSQ 334 >gi|328543899|ref|YP_004304008.1| DNA polymerase III subunit delta' [Polymorphum gilvum SL003B-26A1] gi|326413643|gb|ADZ70706.1| DNA polymerase III subunit delta' [Polymorphum gilvum SL003B-26A1] Length = 357 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 104/194 (53%), Gaps = 3/194 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L GH + E+ L + Y S R HHA + G +GIGKATL FR+A L +PD A Sbjct: 22 PRERTALIGHREAERELLEAYGSRRFHHAWILGGPKGIGKATLAFRFARFALAHPDRFAA 81 Query: 68 PVRMCNPDPCSP---FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + S +Q+A+ + L+L + K ++RT + V+E+RR F Sbjct: 82 LIAAARDLAVSADHVVARQVAAGTHPNLLHLRRPWDDKRKRFRTELPVEEVRRTVSFFGT 141 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA+ WR+ ++D D MN ++ANALLK LEEPP LF+L+SH +L TIRSRC + Sbjct: 142 TASGSGWRICIVDSADEMNVSSANALLKILEEPPANSLFLLLSHTPGRLLPTIRSRCRRL 201 Query: 185 KFNSLSENNLYKAL 198 LS + L Sbjct: 202 DLAPLSAEEIAAGL 215 >gi|258542240|ref|YP_003187673.1| DNA polymerase III subunit delta' [Acetobacter pasteurianus IFO 3283-01] gi|256633318|dbj|BAH99293.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-01] gi|256636377|dbj|BAI02346.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-03] gi|256639430|dbj|BAI05392.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-07] gi|256642486|dbj|BAI08441.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-22] gi|256645541|dbj|BAI11489.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-26] gi|256648594|dbj|BAI14535.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-32] gi|256651647|dbj|BAI17581.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654638|dbj|BAI20565.1| DNA polymerase III delta prime subunit DnaC [Acetobacter pasteurianus IFO 3283-12] Length = 314 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 153/321 (47%), Gaps = 19/321 (5%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L GH+ + Q GR+ HA L G GIGKAT FR A +L Sbjct: 10 QLRGHQAALQAFRQAMQGGRLPHAWLITGPPGIGKATFAFRLARILL------------G 57 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D SP +++++ D L ++ + K K+R+ I D++R I FL TA G WR Sbjct: 58 GEDELSPAGRRVSAATHADLLVVARGFDEKRQKYRSEIVADDVRPINSFLRRTAAEGGWR 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V+++D + MNR+AANA+LK LEEPP + +L A +L TIRSRC ++ SL Sbjct: 118 VVIVDGAEYMNRSAANAVLKILEEPPPATVLLLTCSAPGRLLPTIRSRCRKLELASLDAA 177 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 ++ L D++ V A+G+ RA+ +L +I S L+H Q Sbjct: 178 DMSAVLRAQAPDASDTEIQRVMAEAHGAPGRALALLADKGGEIAS----LVHEVVQGITP 233 Query: 253 QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + ++A+ +L +D F + + A+ AA G + +A + + +++ Sbjct: 234 LRSYEVAETILRRD--YGFSLFFSLLSDTLQIQARQAARQGN-PQCVALANAWEATMRKH 290 Query: 313 HAFSMYNLDRRQMIFHLLSKA 333 +NLD+++ + ++ A Sbjct: 291 AETERFNLDKQEALLEAMTIA 311 >gi|329113409|ref|ZP_08242190.1| DNA polymerase III subunit delta' [Acetobacter pomorum DM001] gi|326697234|gb|EGE48894.1| DNA polymerase III subunit delta' [Acetobacter pomorum DM001] Length = 320 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 19/321 (5%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L GH+ + Q GR+ HA L G GIGKAT FR A +L Sbjct: 16 QLRGHQAALQAFRQAMQGGRLPHAWLITGPPGIGKATFAFRLARILL------------G 63 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D SP +++++ D L ++ + K K+R+ I D++R I FL TA G WR Sbjct: 64 GEDELSPAGRRVSAATHADLLVVARGFDEKRQKYRSEIVADDVRPINSFLRRTAAEGGWR 123 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V+++D + MNR+AANA+LK LEEPP + +L A +L TIRSRC ++ L Sbjct: 124 VVIVDGAEWMNRSAANAVLKILEEPPPATVLLLTCSAPGRLLPTIRSRCRKLELAPLDAA 183 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 ++ L D++ V A+G+ RA+ +L +I S L+H Q Sbjct: 184 DMSAVLHTQAPEASDTEIQRVMAEAHGAPGRALALLADKGGEIAS----LVHEVVQGITP 239 Query: 253 QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + ++A+ +L +D F + + A+ AA G + +A + + +++ Sbjct: 240 LRSYEVAETILRRD--YGFSLFFSLLSDTLQMQARQAARQGN-PQCVALANAWEATMRKH 296 Query: 313 HAFSMYNLDRRQMIFHLLSKA 333 +NLD+++ + ++ A Sbjct: 297 TETERFNLDKQEALLEAMTIA 317 >gi|312115064|ref|YP_004012660.1| DNA polymerase III subunit delta' [Rhodomicrobium vannielii ATCC 17100] gi|311220193|gb|ADP71561.1| DNA polymerase III subunit delta' [Rhodomicrobium vannielii ATCC 17100] Length = 353 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 151/301 (50%), Gaps = 27/301 (8%) Query: 5 AFDPVYNQ---RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 A DP++ + LFGH + E + + +G +HHA L GE+GIGKA+ +R A +L Sbjct: 13 AGDPLHPRLADALFGHNEAEAMFLRSFNAGALHHAWLITGERGIGKASFAWRAARFLLSR 72 Query: 60 --QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + +AP + P +Q+A+ A H L+ + T I VDE+R+ Sbjct: 73 DGEAAGSGRAPATSLDVPSSHPTARQIAAGA-HSSLFALEAGGAST------IGVDEVRK 125 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R FL LT + G WR +++DP + + +ANALLK++EEPPQ+ +F L+SH + +L TI Sbjct: 126 LRAFLGLT-SPGGWRAMIVDPANDLTIASANALLKAVEEPPQRTVFFLVSHGAAAVLPTI 184 Query: 178 RSRCLSIKFNSLSENNLYKALEQL-KIMGWDS----KRDFVKIAAYGSVARAIKILHYDC 232 RSRC+ + L A+E G D+ + + A GS RA+ ++ Sbjct: 185 RSRCIKLALRPLDTAPFACAVEAACARAGLDAPEAEQMQRLHALAGGSAGRALNLIGGGL 244 Query: 233 DKI---ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 K+ + +D + P Q A+ + Q A + D F L + I + I AK+A Sbjct: 245 LKLADKLERVMDGLRRPDQ-AAVHDLIQSASGAKNADT---FARLCDLIEERIEARAKSA 300 Query: 290 A 290 A Sbjct: 301 A 301 >gi|323136278|ref|ZP_08071360.1| AAA ATPase [Methylocystis sp. ATCC 49242] gi|322398352|gb|EFY00872.1| AAA ATPase [Methylocystis sp. ATCC 49242] Length = 354 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 167/349 (47%), Gaps = 32/349 (9%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 D A P FG+ E+ L Y RM A + G +GIGKATL +R A +L +P Sbjct: 15 DDAPHPRETLAFFGNAAAERELLDAYRRNRMAQAWIIGGPEGIGKATLAWRLARFLLAHP 74 Query: 63 DFSKAP-----VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + AP V + P P +++++ AL D L N KT K T I VD++R Sbjct: 75 E-PHAPAVQGAVSLAVP-ADHPAARRISTMALADIFLLRREWNEKTKKHFTEIRVDDVRE 132 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + TG WR+ ++D D +NR+AANALLK +EEPP++ LF+ I+H IL TI Sbjct: 133 IARSFHQGSGTGGWRIAIVDCADDLNRSAANALLKLVEEPPERSLFLFIAHQPGRILPTI 192 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWD---SKRDFVKIAAYGSVARAIKILHYDC-- 232 RSRC + +L+E A+E L D S+ + A GSV +++L D Sbjct: 193 RSRCRKLMLGALTEAETVAAVEALGAPWSDRSKSEIEAAAARAEGSVRETLRLLSGDAMA 252 Query: 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA- 290 D ++ D +P+ ++ + +AD++ +D + A++ + + + + +A A Sbjct: 253 FDAGVARLFD--RLPQVDWL--GVHMLADKITGRDNEDAYETFMRALQRHLDSRVRALAQ 308 Query: 291 -------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 L G ++I +I ++N D+R M+ + + Sbjct: 309 AGAAPARLVGYARAWEEIREI-------ARETEVFNFDKRAMVLGVFER 350 >gi|149201817|ref|ZP_01878791.1| DNA polymerase III subunit delta' [Roseovarius sp. TM1035] gi|149144865|gb|EDM32894.1| DNA polymerase III subunit delta' [Roseovarius sp. TM1035] Length = 374 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 127/254 (50%), Gaps = 9/254 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P +LFG E + + +GR+HH L G +G+GKATL +R A +L Sbjct: 13 VEGAPHPRETVQLFGQSAAEAEFLEAFNTGRLHHGWLITGPRGVGKATLAWRIARFLLAT 72 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P + P P + P +++ + + L K + I V E Sbjct: 73 PLVQDEGLFGAPPPPATLDVAPDHPVARRLLALSDPGLFLLRRGPTDKGDRLAAEIRVSE 132 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R++ F +L+A G RV+++D D +N AANA+LK LEEPP + + +LISH +L Sbjct: 133 VRKLGNFFALSAADGGRRVVIVDAADDLNTQAANAILKMLEEPPARTVLLLISHQPSGLL 192 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC +++ L + +ALEQ I +++ GSV A+++L+ K Sbjct: 193 PTIRSRCRTLRLAPLGPQEMAQALEQAGIAPEGDPAALAELSG-GSVGAAVRLLNLGGLK 251 Query: 235 IISSYIDLIH-IPR 247 + + + L+ +PR Sbjct: 252 LYAELVGLMESLPR 265 >gi|83311548|ref|YP_421812.1| DNA polymerase III subunit delta' [Magnetospirillum magneticum AMB-1] gi|82946389|dbj|BAE51253.1| ATPase involved in DNA replication [Magnetospirillum magneticum AMB-1] Length = 363 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 8/292 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH E L + SGR+ HA L G +GIGKATL +R+A L Sbjct: 7 PRETSELFGHGAAESALLDAWNSGRLAHAWLLCGPKGIGKATLAYRFARFALAGGGDGGG 66 Query: 68 PVRMCNPD----PCSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFL 122 P P +++AS D + + K K R+ I V+++R I +F+ Sbjct: 67 LFGDVPSSLEIRPDHPVFRRIASQGHADLETVERGWADDKKSKLRSEIVVEDVRGIGHFM 126 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 SLT G WRV++ID D MNRNAANA+LK LEEPP+ L +LISH+ +L TIRSRC Sbjct: 127 SLTPAEGGWRVVIIDSADEMNRNAANAVLKVLEEPPRNALMLLISHSPGRLLPTIRSRCR 186 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L E+ + L + + ++ + GS+ +A+ + + ++L Sbjct: 187 RLMLQPLGEDVVADLLTRQRPEVGPTEVAALAKLGEGSIGKALALADEGGLDLYRDLLNL 246 Query: 243 IH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + +PR + + + D++ + +F + E + + + +A G Sbjct: 247 LQGLPRLD--VPALHAFGDKVARPENDGSFRTVTELLGWWLARLIRAGGRQG 296 >gi|144899824|emb|CAM76688.1| ATPase involved in DNA replication [Magnetospirillum gryphiswaldense MSR-1] Length = 359 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 143/291 (49%), Gaps = 17/291 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L GH ++ + SGRM HA L G +GIGKATL +R A VL + Sbjct: 13 LIGHVQAQRDFLDAWTSGRMAHAWLLTGPKGIGKATLAYRIARFVLSGAGEGGG-LFGGP 71 Query: 74 PDPCS-----PFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFLSLTAN 127 PD + P V Q+++ D + + K K RT I +D++R+I TA+ Sbjct: 72 PDTLAISASHPVVHQVSAQGHRDLKVVERGFTDDKKTKMRTEIVIDDVRKIGDLFHQTAD 131 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G WRV++ID D MNRNAANA+LK LEEPP K L +++SH+ +L TIRSRC + N Sbjct: 132 AG-WRVVLIDAADEMNRNAANAVLKILEEPPTKALILMVSHSPGRLLPTIRSRCRRLALN 190 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH--- 244 L + + + L + + D++ + GS+ +A+ + + + Y DLI Sbjct: 191 PLPQETICQLLAKNRPDLTDAELTALANLGEGSLGKALALA---AEGGLDLYRDLIGLLS 247 Query: 245 -IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 +PR + + + A+ + D A+ + E + + + +A G+ Sbjct: 248 ALPRLD--VPALHGFAERVGKNDADTAWRTVTELTVWWLARLVRAGGRQGR 296 >gi|126726754|ref|ZP_01742594.1| DNA polymerase III subunit delta' [Rhodobacterales bacterium HTCC2150] gi|126704083|gb|EBA03176.1| DNA polymerase III subunit delta' [Rhodobacterales bacterium HTCC2150] Length = 370 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 171/361 (47%), Gaps = 39/361 (10%) Query: 3 DRAFD---PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA---- 55 DR D P + + LFG E E Y S R+HHA L G +GIGKATL +R Sbjct: 8 DRILDLPHPRHTKHLFGQEPAEAEFLSAYNSDRLHHAWLITGPRGIGKATLAWRITRFLM 67 Query: 56 ------GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G + P+ AP + P +P + ++ + + L N KT K R Sbjct: 68 TVVEDDGGMFGAPE---APKSLDAPQD-APALARLEALSEPRLFLLRRPFNAKTEKLRAE 123 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVDE+RR++ F L+A+ G RV+++D +D MN NAANALLK LEEPP+ V+ +LI H Sbjct: 124 ITVDEVRRLKSFFELSASDGGRRVLIVDCMDEMNTNAANALLKLLEEPPKDVVMLLICHQ 183 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +L TIRSRC ++ L +++ AL ++ ++++ GSV +A+++ Sbjct: 184 PAGLLPTIRSRCRILRCAPLGTDDMAFALTGAHPDKLENPAALGEMSS-GSVGQALEL-- 240 Query: 230 YDCDKIISSYIDLIHI----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 D ++ Y L+ + P K + A +++++ LI+ L + ++ Sbjct: 241 -DTAGGLAIYETLLSMFSKGPLDRSIAIKFAEAASARGAEEKQALLFRLIDLFLARLART 299 Query: 286 AKAA----ALSGQ----------LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 A A++G+ + A A++ L R NLD +I +L Sbjct: 300 GVAGPAPEAVNGEAGLMSRLCPNVTAARDWAKLAAELGARGKHGRAVNLDPAALILDMLI 359 Query: 332 K 332 K Sbjct: 360 K 360 >gi|84516819|ref|ZP_01004177.1| putative HolB DNA polymerase III delta prime subunit [Loktanella vestfoldensis SKA53] gi|84509287|gb|EAQ05746.1| putative HolB DNA polymerase III delta prime subunit [Loktanella vestfoldensis SKA53] Length = 368 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 4/201 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P L+G E + +GRMH L G +G+GKATL ++ A +L + Sbjct: 12 LDGAPHPRETPVLYGQHAAEAAFLDAFTAGRMHSGWLITGPRGVGKATLAWKIATFLLAD 71 Query: 62 --PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD +PD P + + S A + + KT K R ITVD +R ++ Sbjct: 72 APPDMLGEVTLNVSPD--HPDARLVQSGAHPRLALIRRPWDEKTAKLRGEITVDAVRNLK 129 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +F ++A G RV+++D D MNRNAANA+LK LEEPP + +L++H +L TIRS Sbjct: 130 HFFQMSATDGGRRVVIVDAADEMNRNAANAILKELEEPPAGAVILLVAHQPSRLLPTIRS 189 Query: 180 RCLSIKFNSLSENNLYKALEQ 200 RC ++ LS +L +AL Q Sbjct: 190 RCRELRCGPLSPEDLARALAQ 210 >gi|84499968|ref|ZP_00998234.1| DNA polymerase III, delta prime subunit, putative [Oceanicola batsensis HTCC2597] gi|84391902|gb|EAQ04170.1| DNA polymerase III, delta prime subunit, putative [Oceanicola batsensis HTCC2597] Length = 386 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 29/331 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P RL G + E + SGR+HH L G +G+GKATL +R A +L Sbjct: 12 IEGAPHPRETPRLIGQDAAEAAFLTAFTSGRLHHGWLITGPRGVGKATLAWRIARFLLAT 71 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYS----------LNPKTG 104 PD + P S P ++M S A L N + G Sbjct: 72 PDPGDDGLFGAPHPPASLDIAAEHPVARRMLSGAEPGLFVLRRGGAGSTDKEREKNLRDG 131 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 K+ VI V++ R ++ F SL++ G RV++ID D +N NAANA+LK LEEPP + + + Sbjct: 132 KFSKVIRVEDARPLKAFFSLSSVDGGRRVVIIDAADDLNPNAANAILKLLEEPPARTVLL 191 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 LI+H +L TIRSRC ++ L + +AL+Q +I + + + A GSV A Sbjct: 192 LIAHQPSRLLPTIRSRCRELRLAPLPPPAIAEALDQAEIA-TGAAPEALAELAGGSVGEA 250 Query: 225 IKILHYDCDKIISSYIDLIHI----PRQEYALQKMQQIADELLSQDQKIAFDF-LIEFIL 279 ++++ D +++Y +L+ + PR + A + +++ A F LI+ L Sbjct: 251 VRLVALDG---LATYHNLVALLGTMPRFDAARAQALADMAAARGGEERRALLFHLIDLAL 307 Query: 280 KEICK---SAKAAALSGQLEEADQIAQIYFS 307 + + + + A+ +EA +A++ S Sbjct: 308 SRLARTGATGRPPAVEAAPDEAAILARLAPS 338 >gi|260434142|ref|ZP_05788113.1| DNA polymerase III subunit delta' [Silicibacter lacuscaerulensis ITI-1157] gi|260417970|gb|EEX11229.1| DNA polymerase III subunit delta' [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/357 (29%), Positives = 163/357 (45%), Gaps = 33/357 (9%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF--- 64 P RL G + E+ + S R+HH L G +G+GKATL +R A +L D Sbjct: 17 PRETHRLIGQDAAEQAFLTAFNSERLHHGWLLTGPRGVGKATLAWRIARFLLATEDAQND 76 Query: 65 -----SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + AP + + DP ++ + A ++ SLN K K R I V++IRR+ Sbjct: 77 GLFGGTSAPTTL-DIDPDHAVAHRVRAGAEPGLAVVTRSLNDKE-KLRNEIVVEDIRRLS 134 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F L+A G RV+++D D MN NAANALLK LEEPP + +LISH +L TIRS Sbjct: 135 RFFGLSAADGGRRVVIVDAADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLPTIRS 194 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 RC +++ LS ++ AL Q D + A GSV A+++++ +I + Sbjct: 195 RCRTLRLAPLSPADMAAALAQAGAE-LPPNPDHLSALASGSVGDAVRLINLGGLEIYAEL 253 Query: 240 IDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA-------- 290 I L+ +P + Q+ +A+ + FD L+ I + + A A Sbjct: 254 IGLLATLPGLDR--QRALVLAEAAAQRGASERFDLLLNLIDIALSRLALTGATGTPPSPE 311 Query: 291 -----------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 LS ++A Q AQ ++ R NLD ++ + K +E Sbjct: 312 AAPNEAETLVRLSASPQKARQWAQTAANITARARHGQSVNLDPAAVVLDTVFKIQET 368 >gi|83858302|ref|ZP_00951824.1| DNA polymerase III, delta prime subunit [Oceanicaulis alexandrii HTCC2633] gi|83853125|gb|EAP90977.1| DNA polymerase III, delta prime subunit [Oceanicaulis alexandrii HTCC2633] Length = 346 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/324 (30%), Positives = 154/324 (47%), Gaps = 16/324 (4%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 VY+ LFG + SGRMHHA + G +G+GKA+ +R A +L +A Sbjct: 21 VYD--LFGQDAALNEAEAAISSGRMHHAWMVSGPKGVGKASFAYRLARRLLGARATDEAG 78 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 + DP P +++ + + DFL + N KTGK + I V+E RR F S +A+ Sbjct: 79 L---ASDPDDPVCRRLEALSHPDFLLIRRPYNDKTGKLKGEIPVEEARRAPEFFSKSASG 135 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 WRV ++D D +N N+ANALLK+LEEPPQ+ L ILI + +L TIRSRC + + Sbjct: 136 KGWRVCIVDSADELNVNSANALLKTLEEPPQRGLLILIVNTPGRLLPTIRSRCRRLILRA 195 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID--LIHIP 246 S + L M D + + A G+ RA+ + D ++++ ID L +P Sbjct: 196 PSIEATTQWLMDRHQMSADEAQRAAML-AQGAPGRALALAETDAPALMAT-IDTALSGLP 253 Query: 247 RQEYALQKMQQIADELLSQDQ--KIAFDFLIEFILKEICKSAKAAAL-SGQLEEADQIAQ 303 R + A + +Q I DFL+ + A+A AL +G + A + Sbjct: 254 RLDRAAIAQIAASATRKGGEQIKPITLDFLV----ADAQNRARALALETGGADRAGAWVE 309 Query: 304 IYFSLVKRVHAFSMYNLDRRQMIF 327 L + LD +Q ++ Sbjct: 310 AADRLTRLARESETLYLDPKQTLY 333 >gi|220926668|ref|YP_002501970.1| DNA-directed DNA polymerase [Methylobacterium nodulans ORS 2060] gi|219951275|gb|ACL61667.1| DNA-directed DNA polymerase [Methylobacterium nodulans ORS 2060] Length = 348 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 154/329 (46%), Gaps = 16/329 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L G E E+ + +GR+HHA L G +GIGKATL +R A H+L + Sbjct: 21 PRAQAALIGQEAAERAFREAIGAGRLHHAWLLGGPRGIGKATLAYRVARHLLAQQGTGRG 80 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P P +Q+A + + + L P T ITV+ RR + + T+ Sbjct: 81 VPETLAVAPGHPVARQVAMLSHPNLVVLRRQRAPGAKTVPTQITVEAARRALHLFAETSA 140 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +R+ ++D + +N +ANALLK +EEPP + LF+++SHA +L TIRSRC + Sbjct: 141 DAGYRICIVDCAEELNLASANALLKLIEEPPPRSLFLIVSHAPGRLLPTIRSRCRRLALR 200 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSYIDLIH 244 L + + + L+ L + + AA GSVARA+ +L ++ L+ Sbjct: 201 PLGDAEVVRVLQGLGEPFAAHPPEVLARAARLSEGSVARALGLLDPATLALVDEIEALLA 260 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD----Q 300 P +++ +A+ L S+D ++ ++ + + + AA + +L E Sbjct: 261 APD----WRRVLALAERLNSRDADALYETALDTVQRHL-----AAEIGRRLTEPPARLAA 311 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +A + + + YNLDRR +I L Sbjct: 312 LADASERIARAAREAATYNLDRRPVILSL 340 >gi|254461805|ref|ZP_05075221.1| DNA polymerase III subunit delta [Rhodobacterales bacterium HTCC2083] gi|206678394|gb|EDZ42881.1| DNA polymerase III subunit delta [Rhodobacteraceae bacterium HTCC2083] Length = 380 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 144/305 (47%), Gaps = 20/305 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 A P + L G + E + Y +GR+HH L G +G GKATL +R A +L P Sbjct: 14 ALHPRDTKHLIGQDAAEASFLEAYNTGRLHHGWLMIGPRGTGKATLAYRIARFLLSQPMD 73 Query: 63 --DFSKAPVRMCN--PDPCSPFVKQMASHALHDFLYLSYS----------LNPKTGKWRT 108 AP + + DP P ++A+ A L N + GK+ Sbjct: 74 DGGMFGAPQKPTSLETDPKHPVAHRIAAGADPSLFVLRRGGAGSTESDQKKNLEAGKFAK 133 Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I VD++R++ F + ++ G RV+++D D MN AANALLK LEEPP+ +LISH Sbjct: 134 DIRVDDVRKLNGFFNFSSAEGGRRVVIVDAADEMNVQAANALLKRLEEPPENATLLLISH 193 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L TIRSRC ++ + L ++++ AL Q + D + + GSV AI++ Sbjct: 194 QPSRLLPTIRSRCRELRLSPLGDSDMTNALSQ-ALPDTDLDQRVLTALTSGSVGEAIRMT 252 Query: 229 HYDCDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 ++ I + + L +PR + A A + K+ D L++ I + + A+ Sbjct: 253 NHSGPAIYAELVGLFATMPRMDRARALRLADAAAQRGAEDKL--DMLVDLIALILARLAR 310 Query: 288 AAALS 292 A L Sbjct: 311 AGTLG 315 >gi|330994630|ref|ZP_08318553.1| DNA polymerase III subunit delta' [Gluconacetobacter sp. SXCC-1] gi|329758271|gb|EGG74792.1| DNA polymerase III subunit delta' [Gluconacetobacter sp. SXCC-1] Length = 319 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 158/339 (46%), Gaps = 36/339 (10%) Query: 14 LFGHEDI-EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + GH+ +FLS SGR+HHA L G +G+GKAT+ F A +L D + A R Sbjct: 1 MVGHDAAWAEFLSVIR-SGRLHHAWLLTGPEGVGKATMAFMMARTLLGARDHASAVGRRV 59 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGK---------WRTVITVDEIRRIRYFLS 123 + +HA D L ++ +N K+ K R I D+IR I FL Sbjct: 60 S----------AGTHA--DLLVIARGVNEKSRKKRKKGAPPPLRREIVADDIRPIGTFLH 107 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA G WRV+++D D MNR AANA+LK LEEPP++ + IL + +L TIRSRC Sbjct: 108 RTAAEGGWRVVIVDGADYMNRTAANAILKILEEPPERAILILTAAMPGRLLPTIRSRCRV 167 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 + + ++ L + + D + A+G+ RA+++LH +++ ++ + Sbjct: 168 LNLAPMDNAAMHAVLSAMPDAPPPDRLDAIIPLAHGAPGRALELLH-GGGAVLAGLVEQV 226 Query: 244 H----IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK--AAALSGQLEE 297 P Y + M Q + + FD L + I C A+ A + L Sbjct: 227 MAGQVTPAGAYDVAAMVQEENGF-----SVFFDLLCDAISDRACDLARNPVAPQARDLRP 281 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A ++A ++ + + +NLD +Q I L++ E Sbjct: 282 A-RMALLWQDMARLRAETEQFNLDEQQAILTALARVSET 319 >gi|188583892|ref|YP_001927337.1| DNA-directed DNA polymerase [Methylobacterium populi BJ001] gi|179347390|gb|ACB82802.1| DNA-directed DNA polymerase [Methylobacterium populi BJ001] Length = 363 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 37/339 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL G E + SGR+HHA L G QGIGKATL +R A ++ +P + Sbjct: 28 PREQTRLLGQSHAETAFAAALASGRLHHAWLIGGPQGIGKATLAYRVARRLVADPRTLPS 87 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + P+ P +Q+A+ + + + L P T I+VD R TA Sbjct: 88 PDSLDVPE-DHPASRQVAALSHPNLIALRRVQAPGAKTLPTRISVDAAREALTLFGTTAG 146 Query: 128 T-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D + +N N+ANALLK +EEPP + +F+++SHA +L TIRSRC ++ Sbjct: 147 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALAL 206 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAY----------GSVARAIKILHYDCDKII 236 L+ +++ +E FV+ A GSVARA+ +L + Sbjct: 207 RPLAASDVRAIIEAFPP-------PFVRPDAAALERACALSEGSVARAVALLDPATAAVE 259 Query: 237 SSYIDLI-HIPRQEYALQKMQQIADELLSQDQK----IAFDFLIEFILKEICKSAKAAAL 291 + L+ +P + +++ ++A+ L +D + A D + + EI + Sbjct: 260 AEVSALLADLPEPDG--RRVLKLAETLAGRDAEKLLATALDAIQRHVAAEIDRR------ 311 Query: 292 SGQLEEADQIAQIY---FSLVKRVHAFSMYNLDRRQMIF 327 Q E ++ + + ++YNLDRR ++ Sbjct: 312 --QGEGPARLLALVEAAERIAAAAREAAIYNLDRRPLVL 348 >gi|163795499|ref|ZP_02189465.1| ATPase involved in DNA replication [alpha proteobacterium BAL199] gi|159179098|gb|EDP63631.1| ATPase involved in DNA replication [alpha proteobacterium BAL199] Length = 384 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 159/353 (45%), Gaps = 34/353 (9%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD---- 63 P N L GHE E + + + SGRM HA L G GIGKATL +R A VL Sbjct: 14 PAANPDLIGHEAAEALILEAWSSGRMPHAWLIAGPPGIGKATLAYRIARFVLSGGGAGAD 73 Query: 64 -----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+AP P + + +A+ + D L + K G V+ V+E+R Sbjct: 74 DSLFGMSEAPPTSMAIAPDTRVARMVAAESHPDLKILRRQMTDK-GTMSAVVKVEEVRAF 132 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L + G WRV ++D D MNRNA NALLK LEEPP L +LIS+A ++L T R Sbjct: 133 EASLRFKSAEGGWRVAIVDEADRMNRNAENALLKILEEPPVNTLILLISNALNSMLPTTR 192 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC + L + + L + + ++ + A GS+ RAI + + Sbjct: 193 SRCRRLVLKPLPDPLVLDLLRRARPSVNEADASVLVRLAEGSIGRAIALADAGGADLYRG 252 Query: 239 YIDLI-HIPRQEYAL---QKMQQIADELLSQ---DQKIAFDFLIEFILKEICKSAKAAAL 291 L+ H+P + L + + +A + + AF +E +L I ++ +++A Sbjct: 253 VAGLMGHLPVRRGDLVPGETLHALATAWGRRPKAGEADAFTAGMELMLWWIDRAVRSSAD 312 Query: 292 SGQLEE-------------ADQIAQIYF---SLVKR-VHAFSMYNLDRRQMIF 327 + L+E A + F + V+R +H NLDRRQ++ Sbjct: 313 ATGLQEVIPGDLAVGRRWVASAGVEPVFRRRAEVERLIHLERAVNLDRRQVVL 365 >gi|310816870|ref|YP_003964834.1| DNA polymerase III subunit delta [Ketogulonicigenium vulgare Y25] gi|308755605|gb|ADO43534.1| DNA polymerase III subunit delta [Ketogulonicigenium vulgare Y25] Length = 356 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 139/297 (46%), Gaps = 25/297 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G E + SGRMH L G QGIGKAT +R A +L S Sbjct: 18 PRESHVLLGQGRAEHEFTDAAASGRMHSGWLLTGPQGIGKATFAYRAAAWLLAGAPTSG- 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 M PD P ++ + + + L + N K + +VITV +R++ F L+A Sbjct: 77 ---MDLPD-DHPDLRLIRAGSHPRLLVIKRGPNEKGDRLESVITVRAMRQLGSFFGLSAT 132 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G RV+++D D MN NAANALLK LEEPP + +LI+H +L TIRSRC + Sbjct: 133 DGGRRVVIVDAADDMNPNAANALLKLLEEPPAGAVLLLIAHQPARLLPTIRSRCRVLPLA 192 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHI 245 L+ ++L L+ D ++A GS A +I+ +D K+ Y DL+ + Sbjct: 193 PLTGDDLAAILQ---------AEDGAALSALAQGSAGAAARIVAHDGLKL---YADLVAV 240 Query: 246 ----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 PR + + Q+ + ++ L++ I + ++A+A L L A Sbjct: 241 MDGMPR--FDRPRATQLIASVTARGADGRLALLVDLIDLFLSRAARAGILGAPLPAA 295 >gi|197105067|ref|YP_002130444.1| DNA polymerase III, delta prime subunit [Phenylobacterium zucineum HLK1] gi|196478487|gb|ACG78015.1| DNA polymerase III, delta prime subunit [Phenylobacterium zucineum HLK1] Length = 333 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 154/309 (49%), Gaps = 15/309 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMCNPDPCSPFVKQMASHALH 90 R+HHA L G +G+GKAT +R A +L P AP DP P +Q+A+ + Sbjct: 33 RLHHAWLLTGPEGVGKATFAYRAARRLLGAP---PAPAYGELGSDPNHPVSRQVAARSHP 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D L L P GK R VI V++ RR+ F S + + RV +ID D +N NAANA+ Sbjct: 90 DLLVLERE-GPD-GKPRKVIPVEDARRLGEFFSKSPASAPHRVAIIDAADDLNVNAANAI 147 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK+LEEPP + + ++SH+ +L+TIRSRC + F+ L L +A ++ + Sbjct: 148 LKTLEEPPPRGVLFMVSHSPGRLLATIRSRCRRLTFHPL---ELEEAAAFVRAHADVNVE 204 Query: 211 DFVKIA--AYGSVARAIKILHYDCDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQ 267 + ++++ A G+ RA+ + + + DLI +PR + + +A++ + Sbjct: 205 ESLRLSRMAGGAPGRALALAAAGALAVDDAVRDLIADLPRVDE--TRALSLAEKFRGGEG 262 Query: 268 KIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 AF L + + + A A G + D+ AQ + +L + NLDR +F Sbjct: 263 PQAFALLFDRLADRVHAMATDRAAQG-VGPLDRWAQAWETLQRLPREVEALNLDRTDALF 321 Query: 328 HLLSKAREC 336 LS+ R+ Sbjct: 322 AALSELRQA 330 >gi|254293992|ref|YP_003060015.1| DNA polymerase III subunit delta' [Hirschia baltica ATCC 49814] gi|254042523|gb|ACT59318.1| DNA polymerase III subunit delta' [Hirschia baltica ATCC 49814] Length = 325 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 154/341 (45%), Gaps = 26/341 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 +F PV GH+D + + + SGRMHH +F G +GIGK ++A +L Sbjct: 8 SFGPV-----IGHDDAQAEILEALRSGRMHHGWMFTGPRGIGKFRTAMQFAAALLSGETG 62 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + + D + M +++ D + + K GK + I V IR + F SL Sbjct: 63 T------LDIDEANHTAHLMLNNSHPDLRIVQRPFDDK-GKQKAEIPVASIRDLIKFFSL 115 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G WR+ +ID +D MNRN NALLK+LEEPP + L ILI H +L TI+SRC ++ Sbjct: 116 RPAMGGWRIAIIDALDEMNRNGENALLKTLEEPPAQCLIILIVHGEAQVLPTIKSRCRNL 175 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 +FN LSE AL ++ D+K A G A+K+ D S Sbjct: 176 RFNPLSEAEGVTALVNTGMLEADAKDTLSY--APGRPGIAMKLKSSDARTAARSARSAAS 233 Query: 245 IPRQEYALQKMQQIADELLSQDQKI-AFDFLIEFILKEICKSAKAA--ALSGQLEEADQI 301 P +Q+++ L S + AFD + KSAK A ALS A Sbjct: 234 KPSG----IDFRQLSEVLTSAAKSPEAFDAAFSSLCAVAYKSAKNADDALS-----AGAW 284 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 AQ + +L+ N D+ Q + + +++ + L R Sbjct: 285 AQTHENLIALAAETKALNQDKSQAVANAITQIQRTGRLVSR 325 >gi|114798506|ref|YP_760516.1| putative DNA polymerase III, delta prime subunit [Hyphomonas neptunium ATCC 15444] gi|114738680|gb|ABI76805.1| putative DNA polymerase III, delta prime subunit [Hyphomonas neptunium ATCC 15444] Length = 311 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 4/186 (2%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 LFGHE E + SGR+HHA L EG G+GKA + R A ++L + AP Sbjct: 7 LFGHEAAEAAFLSAHRSGRLHHAWLIEGPSGVGKARVAERIAAYLLGARGPAAAPFDAPA 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P ++ + + D LN K GK ITV++IR++ +F S+ G WRV Sbjct: 67 ---DDPVMRAILAGNHPDMNVQRRELNDK-GKLTQDITVEQIRQVGHFFSMKPAMGGWRV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++D +D NRN+ANALLK+LEEPP + + +L++H S IL TIRSRC ++ + LS + Sbjct: 123 GIVDAIDEANRNSANALLKTLEEPPAQSILLLVNHRSRPILPTIRSRCRVLQLSVLSAED 182 Query: 194 LYKALE 199 +ALE Sbjct: 183 CERALE 188 >gi|302383104|ref|YP_003818927.1| DNA polymerase III subunit delta' [Brevundimonas subvibrioides ATCC 15264] gi|302193732|gb|ADL01304.1| DNA polymerase III, delta prime subunit [Brevundimonas subvibrioides ATCC 15264] Length = 326 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 153/308 (49%), Gaps = 27/308 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR+HHA L G +G+GKAT +R A +L PD ++ P+ DP V Q+ S Sbjct: 28 GRLHHAWLLCGPEGLGKATFAYRAARRLLGAQPDATRGPLGASPGDP----VSQLISAQS 83 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H L + L+ + GK + I+VD+ R + F S + + +RV ++D D +N NAANA Sbjct: 84 HPDLLVLERLS-EGGKVKKSISVDQARDLPEFFSKSPSQAAYRVAIVDAADDLNPNAANA 142 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGWDS 208 LLK+LEEPP++ + LI+HA +L+TIRSRC + F E + + Q + G ++ Sbjct: 143 LLKTLEEPPERGVLFLITHAPGRLLATIRSRCRRLAFAPWDEAAVAALVARQTDLEGDEA 202 Query: 209 KRDFVKIAAYGSVARAIKI---LHYDCDKIISSYIDLIHIPRQEYALQKMQQIA--DELL 263 R + A GS A+ + + D++ ++ ++ AL + +Q+A D Sbjct: 203 AR--IAGMARGSPGAALSLATEANLALDRLARRWV-------EDPALDRAEQMAMSDTFR 253 Query: 264 SQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR 323 D + F E ++ + + KA +L Q + A ++ L + NLDR Sbjct: 254 GADGQARF----EALMDRLTAAVKARSL--QTGDGAAWADLWTRLSDLPDRTAAVNLDRA 307 Query: 324 QMIFHLLS 331 ++ L+ Sbjct: 308 DVLSGALA 315 >gi|260575560|ref|ZP_05843558.1| AAA ATPase [Rhodobacter sp. SW2] gi|259022203|gb|EEW25501.1| AAA ATPase [Rhodobacter sp. SW2] Length = 377 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 164/364 (45%), Gaps = 30/364 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P L GH + + +GR+HH L G +G+GKATL ++ A +L Sbjct: 14 IEGAPHPRETTTLIGHAAAQAEFLGNFNAGRLHHGWLISGPRGVGKATLAWKIARFLLAT 73 Query: 62 PD-----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 P+ F+ P + P P ++MA+ + L N I VDE+R Sbjct: 74 PENDGGMFAPPPPDSLDISPDHPVARRMAALSEGRLFLLRRGKNSTGTGLSADIRVDEVR 133 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +++ F SL+A G RV +ID D MN AANALLK LEEPP V +L+SH +L T Sbjct: 134 QMKSFFSLSAADGGRRVAIIDSADEMNPGAANALLKLLEEPPAGVTLLLVSHQPFRLLPT 193 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDK 234 IRSRC ++ +L L AL Q D RD +A A GSV +A+++ + Sbjct: 194 IRSRCRELRLTTLPPEPLAAALAQAGADVAD--RDVAALAELAGGSVGQALQLGTLEGLT 251 Query: 235 IISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA----- 288 S I L+ +PR + + +A+ + + FD L+ I + + A+A Sbjct: 252 HYRSLIALMATLPRLDR--PRALALAELGAGRGNEPRFDLLVTLIDLLLARLARAGTLGH 309 Query: 289 ---------AALSGQLEEADQIAQIYFSLVK----RVHAFSMYNLDRRQMIFHLLSKARE 335 AAL +L A+I+ L + R NLD ++ ++ K E Sbjct: 310 CPPEACPGEAALIARLAPTPTAARIWADLAQSLGLRARRGKAVNLDPAALLLDMILKIDE 369 Query: 336 CNDL 339 L Sbjct: 370 TAAL 373 >gi|58038508|ref|YP_190472.1| DNA polymerase III delta prime subunit DnaC [Gluconobacter oxydans 621H] gi|58000922|gb|AAW59816.1| DNA polymerase III delta prime subunit DnaC [Gluconobacter oxydans 621H] Length = 280 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 152/301 (50%), Gaps = 39/301 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 +HHA L G GIGKATL FR A +L +NPD S+A +++A+ Sbjct: 2 LHHAWLICGPAGIGKATLAFRLARLLLNAENPDSSQA--------------RRIAAGTHG 47 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D L +S +++ K G+ R IT ++R ++ FL TA G WRV+++D + +NR AANAL Sbjct: 48 DLLEISRAVDEKKGRLRGEITAADVRPVQTFLHHTATEGGWRVVIVDGAEYLNRFAANAL 107 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK LEEPP + + +L + + +L TIRSRC + ++LS+ ++ AL + Sbjct: 108 LKILEEPPPRCVLLLTTSSPGALLPTIRSRCRMLTLSALSDADMRAALPGISA------- 160 Query: 211 DFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 V A+GS RA+ L D D I+S++ I Q E ++ ++IA Sbjct: 161 -DVLARAHGSPGRAL-FLSQDRDGAIASFVAEI---------LAGQVRGSETMALSERIA 209 Query: 271 -----FDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 F L + + + + A++AA G L +AD A+ L +NLD+ Q Sbjct: 210 REAEGFALLCDLLGEGLADRARSAARRGDLAKADLAARQCSELDTLRRQTEGFNLDKAQA 269 Query: 326 I 326 I Sbjct: 270 I 270 >gi|6318311|gb|AAF06832.1|AF099189_2 DNA polymerase III delta prime subunit [Caulobacter crescentus CB15] Length = 335 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 157/329 (47%), Gaps = 17/329 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 L G E GR+HHA L G +G+GKATL +R A +L PD S+ + Sbjct: 13 LDGQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPDPSQG---LL 69 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P +Q+A+ + D + L + GK R I VDE R++ F + + +R Sbjct: 70 GAAPSDVVSRQVAARSHPDLMVLERLTD--DGKARKSIPVDEARKLPEFFANSPAVSPYR 127 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID D +N NAANA+LK+LEEPP + + +LISHA +L TIRSRC + ++ Sbjct: 128 VAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRL---AIPAP 184 Query: 193 NLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIH-IPR-Q 248 + A E ++ M RD ++A A+G+ RA+++ I + +++ +P+ Sbjct: 185 GVAAAAEMVERMADVPHRDAERLARMAHGAPGRALQLAAAGAIAIDDAANEILRSLPKLD 244 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA-DQIAQIYFS 307 E AL M AD + F+ L++ + ++ A A G+ D+ A + Sbjct: 245 EGALLAM---ADTFRGAEGAARFELLMDRLADQVRIFATQVAADGKNSLGLDRWAAAWER 301 Query: 308 LVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L NLDR + + ++S R Sbjct: 302 LSSWPGEAEAVNLDRADVFWSVISDLRAA 330 >gi|16126066|ref|NP_420630.1| DNA polymerase III subunit delta' [Caulobacter crescentus CB15] gi|221234836|ref|YP_002517272.1| DNA polymerase III subunit delta' [Caulobacter crescentus NA1000] gi|13423258|gb|AAK23798.1| DNA polymerase III, delta prime subunit [Caulobacter crescentus CB15] gi|220964008|gb|ACL95364.1| DNA polymerase III, delta' subunit [Caulobacter crescentus NA1000] Length = 336 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 157/329 (47%), Gaps = 17/329 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 L G E GR+HHA L G +G+GKATL +R A +L PD S+ + Sbjct: 14 LDGQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPDPSQG---LL 70 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P +Q+A+ + D + L + GK R I VDE R++ F + + +R Sbjct: 71 GAAPSDVVSRQVAARSHPDLMVLERLTD--DGKARKSIPVDEARKLPEFFANSPAVSPYR 128 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID D +N NAANA+LK+LEEPP + + +LISHA +L TIRSRC + ++ Sbjct: 129 VAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRL---AIPAP 185 Query: 193 NLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIH-IPR-Q 248 + A E ++ M RD ++A A+G+ RA+++ I + +++ +P+ Sbjct: 186 GVAAAAEMVERMADVPHRDAERLARMAHGAPGRALQLAAAGAIAIDDAANEILRSLPKLD 245 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA-DQIAQIYFS 307 E AL M AD + F+ L++ + ++ A A G+ D+ A + Sbjct: 246 EGALLAM---ADTFRGAEGAARFELLMDRLADQVRIFATQVAADGKNSLGLDRWAAAWER 302 Query: 308 LVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L NLDR + + ++S R Sbjct: 303 LSSWPGEAEAVNLDRADVFWSVISDLRAA 331 >gi|103486744|ref|YP_616305.1| DNA-directed DNA polymerase [Sphingopyxis alaskensis RB2256] gi|98976821|gb|ABF52972.1| DNA polymerase III, delta prime subunit [Sphingopyxis alaskensis RB2256] Length = 326 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++ EK + GR+HHA L G QG+GK R A ++ + + Sbjct: 1 MIGHQEAEKAFLDGWQGGRLHHAWLLAGPQGMGKGDFAERAARFLVTHGAGGGRAAVALD 60 Query: 74 --PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D + + +H + + L+ KT + IT+D++R++ L L+ + G W Sbjct: 61 DRGDDAAARLVDAGNHP--EIIRLTRQPKDKTKELARNITIDQVRQVIRRLHLSLSLGDW 118 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RVI++D VD + + ANALLK+LEEPP + LF+L+SH+ +L TIRSRC ++F + Sbjct: 119 RVIIVDAVDDLESDGANALLKTLEEPPARTLFLLVSHSPGRLLPTIRSRCRILRFQPIDR 178 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSV-ARAIKILHYDC 232 + + L L+ M D +AA G V +A+ ++ D Sbjct: 179 DVMVSWLHDLRPM-LDMPEVRAIVAASGGVPGKALALIDSDV 219 >gi|254455114|ref|ZP_05068549.1| DNA polymerase III delta prime subunit protein [Octadecabacter antarcticus 238] gi|198263524|gb|EDY87796.1| DNA polymerase III delta prime subunit protein [Octadecabacter antarcticus 238] Length = 384 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 21/304 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P LFG E + SGR+H L G QG+GKATL +R A +L Sbjct: 14 IEGAPHPSEAAILFGQSRAEADFLDAFTSGRLHSGWLISGPQGVGKATLAWRMAAFLLSQ 73 Query: 62 PDFSKAPVRMCNPDPCSPFVK------QMASHALHDFLYL-SYSLNPKTGKWRTVITVDE 114 P + + P P S V ++ H L++ ++N + IT+ Sbjct: 74 PLAADDDMFGAPPAPISLDVDDDNGDLRLLRAGAHPRLFVVRRTMNVTESGLQDQITMAA 133 Query: 115 IR-------RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +R ++ FL +A G RV++ID D MN + AN++LK LEEPP+ F+L+S Sbjct: 134 LRGHKGGPNKLMEFLHQSAADGGRRVVIIDCADEMNPSVANSILKVLEEPPKNTFFLLVS 193 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 H +L TIRSRC ++ L +++ AL Q I+ + D + + GSV AI++ Sbjct: 194 HQPSRLLPTIRSRCRILRCGLLGADDVTAALAQADIV--VDRGDALTALSGGSVGEAIRL 251 Query: 228 LHYDCDKIISSYIDLIHI--PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 + D +S Y DLI + + + ++AD + + F ++ I K + ++ Sbjct: 252 TNLDG---LSLYSDLIFLFNGLPNFDRPRALKLADSCIGKAGATRFALTLDLIDKFLARA 308 Query: 286 AKAA 289 A+A Sbjct: 309 ARAG 312 >gi|89070237|ref|ZP_01157561.1| DNA polymerase III, delta prime subunit, putative [Oceanicola granulosus HTCC2516] gi|89044157|gb|EAR50315.1| DNA polymerase III, delta prime subunit, putative [Oceanicola granulosus HTCC2516] Length = 379 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 127/253 (50%), Gaps = 18/253 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P L+G E + SGR+H L G +G+GKATL ++ A +L Sbjct: 13 IEGAPHPRETPLLYGQARAEAGFLDAWESGRLHSGWLLTGPRGVGKATLAWKIAAFLLAE 72 Query: 62 P---DFSKAPVRMCNPD-----PCSPFVKQMASHALHDFLYL-SYSLNPKTGKWRTVITV 112 P AP R PD P P ++ + + A H L+L N K K I Sbjct: 73 PADDGLFGAPPR---PDRLGLAPDHPDMRLILAGA-HPRLHLVRRGPNDKGDKLSADIRA 128 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D +R ++ F L+A G R +++D D MN +AAN+LLK LEEPP++ +L+SH Sbjct: 129 DVVRGMKRFFQLSAADGGRRAVIVDAADEMNVSAANSLLKELEEPPERTTLLLVSHQPSR 188 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +L TIRSRC ++ L +++ AL Q + ++ + + A GSV AI+++ D Sbjct: 189 LLPTIRSRCRELRLAPLGPDDMAAALAQAGVE--VAETEALAALAAGSVGEAIRLVRQDG 246 Query: 233 DKIISSYIDLIHI 245 ++ Y DL+ + Sbjct: 247 ---LALYGDLVKL 256 >gi|182678511|ref|YP_001832657.1| putative DNA polymerase III delta prime subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634394|gb|ACB95168.1| putative DNA polymerase III delta prime subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 372 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 24/337 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L GHE E L Y + A+L G GIGKATL +R A +L +P V Sbjct: 26 LIGHEAAEASLLAAYRGNVLPQAILLGGPMGIGKATLAWRLARFLLAHPAPHAPEVTAAT 85 Query: 74 ----PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 P P Q+AS A D + L N + K+ + I VD++RR + A G Sbjct: 86 TLHVPQ-THPISHQIASLAHPDLVLLRREWNERGKKFFSEIRVDDVRRTTHLFQQAAGAG 144 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +R+ +ID V+ +N + ANALLK +EEPP + LF+LISH +L T+RSRC + L Sbjct: 145 GYRIAIIDSVEDLNASGANALLKLIEEPPPRSLFLLISHRPGHVLPTLRSRCRLMSLKPL 204 Query: 190 SENNLYKALEQLKIMGWDSKRD-------FVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 S+ L + +L DS+ + AA+GS+ ++ L + I ++ L Sbjct: 205 SDEALAAIIAELGPPWTDSESARHQASLLSLAQAAHGSLHPLLRRLDPNGRGIEATVNRL 264 Query: 243 I-HIPRQEYALQKMQQIADELLSQD-------QKIAFDFLIEFILKEICKSAKAAALSGQ 294 + +PR ++ + + +AD++ + + FD+L + + + L Sbjct: 265 LGDLPRVDW--RGVHVLADQIATDPDNNLEILRTTIFDWLDARLHAQTRQMGSVMPL--D 320 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 L +A+++ + + NLD+RQ+I L + Sbjct: 321 LHSLAPLAEVWDKVTSDLREAEALNLDKRQLILSLFT 357 >gi|254438219|ref|ZP_05051713.1| hypothetical protein OA307_3089 [Octadecabacter antarcticus 307] gi|198253665|gb|EDY77979.1| hypothetical protein OA307_3089 [Octadecabacter antarcticus 307] Length = 384 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 143/303 (47%), Gaps = 19/303 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P LFG E + S R+H L G QG+GKATL +R A +L Sbjct: 14 IEGAPHPSQTAILFGQSRAETDFLDAFTSDRLHSGWLITGPQGVGKATLAWRMAAFLLSQ 73 Query: 62 PDFSKAPVRMCNPDPCSPFVK------QMASHALHDFLYL-SYSLNPKTGKWRTVITVDE 114 P + + P P S V ++ H L++ ++N + IT+ Sbjct: 74 PLVAGDDMFSAPPPPTSLDVDDDNGDLRLLHAGAHPRLFVVRRTMNVTETGLQDQITMAA 133 Query: 115 IR-------RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +R ++ FL +A G RV++ID D MN + AN++LK LEEPP+ F+L+S Sbjct: 134 LRGHKSGPNKLMDFLHQSAADGGRRVVIIDCADEMNPSVANSILKVLEEPPKNTFFLLVS 193 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 H +L TIRSRC ++ L +++ AL Q IM + D + + GSV AI++ Sbjct: 194 HQPSRLLPTIRSRCRILRCGLLGTDDVTAALAQADIM--VDRGDALTALSGGSVGEAIRL 251 Query: 228 LHYDCDKIISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 + D + S I L + +P + + ++AD + + F ++ I K + ++A Sbjct: 252 TNLDGLSLYSELIILFNGLP--NFDRPRALKLADSCIGKAGATRFALTLDLIDKFLARAA 309 Query: 287 KAA 289 +A Sbjct: 310 RAG 312 >gi|307292798|ref|ZP_07572644.1| DNA polymerase III delta' subunit [Sphingobium chlorophenolicum L-1] gi|306880864|gb|EFN12080.1| DNA polymerase III delta' subunit [Sphingobium chlorophenolicum L-1] Length = 320 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 2/185 (1%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L GH+ + L SGR+HH + G +GIGKA+ A +L + Sbjct: 4 LLGHDPQARTLLGAARSGRLHHGWILAGPRGIGKASFARAMALRLLAEAAGPPVTGEGLD 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P P + + A D+ L Y L ++G R ITVD+IR ++ + + RV Sbjct: 64 VPPDHPIRRLFEAEAHPDYADL-YCLEKESGTARN-ITVDQIRGLQRLIQSAPSMSSRRV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ID D + R AANALLK+LEEPP +LF+L+SHA +L TIRSRC +++F++LS++ Sbjct: 122 VVIDSADDLERGAANALLKNLEEPPADMLFLLVSHAPGRLLPTIRSRCRTLRFDALSDDA 181 Query: 194 LYKAL 198 + L Sbjct: 182 MRSIL 186 >gi|295689512|ref|YP_003593205.1| DNA polymerase III subunit delta' [Caulobacter segnis ATCC 21756] gi|295431415|gb|ADG10587.1| DNA polymerase III, delta prime subunit [Caulobacter segnis ATCC 21756] Length = 335 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 157/329 (47%), Gaps = 17/329 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 L G E+ GR+HHA L G +G+GKATL +R A +L P+ S + + Sbjct: 13 LEGQSAAEEAFLDALDRGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPEPS---LGLL 69 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P +Q+A+ + D + L + GK R I VDE RR+ F + + +R Sbjct: 70 GAAPSDVVSRQVAARSHPDLMVLERLTD--DGKARKSIPVDEARRLPEFFANSPAISPYR 127 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID D +N NAANA+LK+LEEPP + + +LISHA +L TIRSRC + + Sbjct: 128 VAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRLPVPA---P 184 Query: 193 NLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIH-IPR-Q 248 + A + ++ M RD ++A A+G+ RA+++ I + +++ +P+ Sbjct: 185 GVPAAADMVERMADLPHRDAERLARMAHGAPGRALQLAAAGAIAIDDAANEILRALPKID 244 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA-DQIAQIYFS 307 E AL M AD + F+ L++ + ++ A A G+ D+ A + Sbjct: 245 EGALLAM---ADTFRGAEGAARFELLMDRMADQVRIFATQVAADGKNSPGLDRWAAAWER 301 Query: 308 LVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L NLDR + + ++S R Sbjct: 302 LSSVPGEAEAVNLDRGDVFWSVISDLRAA 330 >gi|315499861|ref|YP_004088664.1| DNA polymerase iii, delta prime subunit [Asticcacaulis excentricus CB 48] gi|315417873|gb|ADU14513.1| DNA polymerase III, delta prime subunit [Asticcacaulis excentricus CB 48] Length = 336 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 152/321 (47%), Gaps = 46/321 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-DFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR+HHA L G +G+GKATL +R A +++ + D + M DP + + + + Sbjct: 36 GRLHHAWLLCGPEGVGKATLAYRAARYLMGHQRDRGFGILGMSEEDPDARLI---VAQSH 92 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D L L K GK R ITVD +R + F S + +RV ++D VD +N N+ANA Sbjct: 93 PDLLVLER--EQKDGKTRKNITVDAVREVVEFFSKAPSRSAYRVCIVDAVDDLNINSANA 150 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK LEEPP++ L LISH+ +L+TIRSRC + F+ + + + + + + Sbjct: 151 LLKILEEPPERGLLFLISHSPGKLLATIRSRCRRLGFSPWDDEAVQRFISARADLSPEQL 210 Query: 210 RDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI 269 V + A GS + +++ +E AL+ M ++A LLS Q Sbjct: 211 ERLV-VMAKGSPGKGLRLW-------------------EEGALE-MDELAARLLSDAQPA 249 Query: 270 AFDFLIEFILKEICKSAK---------AAALSGQLEE----AD------QIAQIYFSLVK 310 FD L L + S AALS +++E AD Q ++++ L Sbjct: 250 RFDLLPLMTLFKTNSSKIDGPKKFAQFIAALSDRVQERALSADAPARGRQWSELWVKLST 309 Query: 311 RVHAFSMYNLDRRQMIFHLLS 331 V NLDR + + +++ Sbjct: 310 VVAETEGVNLDRGEYFWSIVN 330 >gi|217976729|ref|YP_002360876.1| AAA ATPase [Methylocella silvestris BL2] gi|217502105|gb|ACK49514.1| AAA ATPase [Methylocella silvestris BL2] Length = 364 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 4/190 (2%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--PDFSKAPVRMC 72 GHE+ E L + +G++ HA+L G G+GKATL +R A +L N P + A + Sbjct: 31 IGHEEAEAELLRACAAGQLPHAILIGGPSGVGKATLAWRLARFLLVNREPAAAAAKAQDL 90 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYW 131 + P +Q S A D L N KT K T I V+++RR I F GY Sbjct: 91 ATEQDHPAARQALSLAHPDLFVLRREWNEKTKKLATEIRVEDVRRAIHMFHQAAGGQGY- 149 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV ++D + +N + ANALLK +EEPP + +FI+I+H +L+TIRSRC + L E Sbjct: 150 RVAIVDSAEDLNASGANALLKLIEEPPPRCVFIIIAHRPGRVLATIRSRCRKLMLKPLQE 209 Query: 192 NNLYKALEQL 201 N + + + L Sbjct: 210 NEVARIVATL 219 >gi|56551987|ref|YP_162826.1| DNA polymerase III subunit delta' [Zymomonas mobilis subsp. mobilis ZM4] gi|241761930|ref|ZP_04760015.1| DNA polymerase III, delta prime subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752470|ref|YP_003225363.1| DNA-directed DNA polymerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543561|gb|AAV89715.1| DNA polymerase III, delta prime subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241373610|gb|EER63182.1| DNA polymerase III, delta prime subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551833|gb|ACV74779.1| DNA-directed DNA polymerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 330 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/336 (28%), Positives = 160/336 (47%), Gaps = 27/336 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFSKAPV 69 +L GH+ K SGR+HHA L G +G+GK R A +L N PD K Sbjct: 3 QLLGHDTAIKAFRHAEDSGRLHHAWLLTGAKGLGKRLFADRAAAWLLANAVNPDIRKNTA 62 Query: 70 R----MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV-ITVDEIRRIRYFLSL 124 + +P +K SH D L L + R ITVD++R I+ + Sbjct: 63 SDSLDIPEGNPTLSLIK-AGSHP--DLLRLERLFRDSKEQERARNITVDQVRTIQKLFAT 119 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T + RV++ID +D + R+AANALLK+LEEPP +F LISHA+ +L TIRSRC + Sbjct: 120 TPALSFRRVVIIDSIDDLERSAANALLKNLEEPPAGTIFFLISHAAGRLLPTIRSRCRIL 179 Query: 185 KFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 F+ L +N + + L L + + VKI + G+ ++ D ++ ++ +++ Sbjct: 180 SFHLLEDNLVAQILRHHLPDITAEELASLVKI-SQGAAGYGLRFAGLDMAELDNAIENIV 238 Query: 244 HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ--------L 295 +++ L+ ++A L + + ++ +E I SA+A +L G+ Sbjct: 239 KTGDRDFLLR--SKLAQSLSLKSAQGRYEAFLERAPSRI--SAEARSLKGEKLAQAIHLW 294 Query: 296 EEADQIAQ--IYFSLVKRVHAFSMYNLDRRQMIFHL 329 E+A Q+ + FSL + F++ R H+ Sbjct: 295 EKARQLGNEAVLFSLDPQATVFTLAGFLARLAPTHI 330 >gi|329850686|ref|ZP_08265531.1| DNA polymerase III, delta' subunit [Asticcacaulis biprosthecum C19] gi|328841001|gb|EGF90572.1| DNA polymerase III, delta' subunit [Asticcacaulis biprosthecum C19] Length = 333 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNP 74 G E ++ + R+HHA L G QG+GKA+ FR A ++ N D S + M Sbjct: 18 GGEAADRSFLTAFQRDRLHHAWLLCGPQGLGKASFAFRCARFLMGHNRDESFGALGMARD 77 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 D V+ + + + D L L + K + I+VD +R + F S + +RV Sbjct: 78 DAD---VRLITAQSHPDLLVLEREMGDT--KLKKNISVDAVREVGEFFSKAPSRSAFRVC 132 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID VD +N N+ANALLK LEEPP K + LISH+ +L+TIRSRC + F S+ + Sbjct: 133 IIDSVDDLNINSANALLKILEEPPHKGIIFLISHSPGKLLATIRSRCRRLNFPPWSDTEV 192 Query: 195 YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH---YDCDKIISSYIDLIHIPRQE 249 L +I D D + A+G+ RA+ ++ + D + + PRQE Sbjct: 193 NAFLRH-RIDLEDEAVDRLVRLAHGAPGRALSLMQEGALEMDSLAGRMLKTARPPRQE 249 >gi|329889613|ref|ZP_08267956.1| DNA polymerase III, delta' subunit [Brevundimonas diminuta ATCC 11568] gi|328844914|gb|EGF94478.1| DNA polymerase III, delta' subunit [Brevundimonas diminuta ATCC 11568] Length = 326 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 7/181 (3%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 E FL GR+HHA L G +G GKA+ +R A +L PD S+ P+ DP S Sbjct: 19 EAFLDALN-RGRLHHAWLLCGVEGSGKASFAYRAARRLLGAAPDPSRGPLGAAPHDPVSR 77 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 V ++ A D L L ++ + GK + I+VD+ R + F + + + RV +ID Sbjct: 78 LV---SAQAHPDLLVLERAV--EGGKLKRAISVDQARDLPEFFAKSPSQARHRVAIIDAA 132 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D +N NAANALLK LEEPP+ + L++HA +L+TIRSRC + F E L + Sbjct: 133 DDLNINAANALLKILEEPPESGVLFLVTHAPGRLLATIRSRCRRLTFPVWPEARLADLVR 192 Query: 200 Q 200 Q Sbjct: 193 Q 193 >gi|119384877|ref|YP_915933.1| DNA polymerase III subunit delta' [Paracoccus denitrificans PD1222] gi|119374644|gb|ABL70237.1| DNA polymerase III, delta prime subunit [Paracoccus denitrificans PD1222] Length = 365 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 21/298 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDF 64 P R+ G + + R+HHA L G +G GKATL + A +L PD Sbjct: 23 PRDAARIIGQDAAVADFLAAAQAHRLHHAWLISGPRGTGKATLAWNIAKWLLSGAGTPDL 82 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P DP ++ ++ LH + ++ KT + R ITVDEIRR++ F + Sbjct: 83 TVPPD-----DPTIRRIRALSEPRLH---LVRRPVDEKTLRLRAEITVDEIRRLQGFFHM 134 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +A G RV +ID D MN+ AANALLK LEEPPQ +L++H +L TIRSRC + Sbjct: 135 SAAEGGHRVAIIDAADEMNQAAANALLKLLEEPPQASTLLLVAHQPARLLPTIRSRCREL 194 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSYI 240 + + LS ++ + L L G D + + GS+ A+++ D +I + Sbjct: 195 RLHPLSPEDMGQVLHDL---GLDHDAARLSALSGGSIGEALRLAGQDGLAVYQRITGLFA 251 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 D PR + + + FD ++ + + + ++A++ L L EA Sbjct: 252 D---YPRMDRRAAAALAEMAAGRAGAEGDPFDLVVTLLDRFLTRAARSGLLGAPLPEA 306 >gi|167646660|ref|YP_001684323.1| DNA polymerase III subunit delta' [Caulobacter sp. K31] gi|167349090|gb|ABZ71825.1| DNA polymerase III, delta prime subunit [Caulobacter sp. K31] Length = 334 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 15/191 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVL---QN 61 P + + +F E +E + + GR+HHA L G +G+GKATL +R A +L + Sbjct: 4 PPHPRDVFAIEGVEAAERAFLDALDRGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPD 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P F + P +Q+A+ + D + L + + GK R I VDE R + F Sbjct: 64 PAFG-----VLGSAPTDVVSRQVAARSHPDLMVLERATD--DGKARKSIPVDEARLLPAF 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +RV +ID D +N NAANA+LK+LEEPP + + +L+SH+ +L TIRSRC Sbjct: 117 FANSPAISPYRVAIIDAADDLNVNAANAVLKTLEEPPARGVILLVSHSPGRLLPTIRSRC 176 Query: 182 --LSIKFNSLS 190 L+I +LS Sbjct: 177 RRLAIHAPALS 187 >gi|294011647|ref|YP_003545107.1| DNA polymerase III delta' subunit [Sphingobium japonicum UT26S] gi|292674977|dbj|BAI96495.1| DNA polymerase III delta' subunit [Sphingobium japonicum UT26S] Length = 320 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 4/214 (1%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L GH++ L SGR+HH + G +GIGKA+ A +L Sbjct: 4 LLGHDEQAHTLLGAARSGRLHHGWILVGPRGIGKASFARAIALRLLAEAAGPPMAADGLE 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P + + A D+ L + L ++G R ITVD++R ++ + + R+ Sbjct: 64 VPQDHPIRRLFEADAHPDYADL-FCLEKESGTARN-ITVDQVRGLQRLIQSAPSLSTRRI 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ID D + R AANALLK+LEEPP +LF+L+SHA +L TIRSRC +++F+SL E+ Sbjct: 122 VVIDSADDLERGAANALLKNLEEPPADMLFLLVSHAPGRLLPTIRSRCRTLRFDSLGEDA 181 Query: 194 LYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIK 226 + L Q + D V+ A GS +A++ Sbjct: 182 MRSILRQADAGLSPDELTALVR-AGEGSPGKALR 214 >gi|87199957|ref|YP_497214.1| DNA polymerase III, delta prime subunit [Novosphingobium aromaticivorans DSM 12444] gi|87135638|gb|ABD26380.1| DNA polymerase III, delta prime subunit [Novosphingobium aromaticivorans DSM 12444] Length = 318 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 17/235 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++ + RMHH + G +G+GKAT A ++ D + PV M + Sbjct: 1 MIGHDEAWRAWRSAMAGPRMHHGWILAGREGLGKATFARAAAAELVSEADVPQPPVDM-H 59 Query: 74 PDPCS----PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 PD + P + A YL+ + I+VD++R ++ L+ G Sbjct: 60 PDILTLSPLPASEDEAKKRDEGKPYLT----------KRNISVDQVRELQRRLTTRPTLG 109 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 R ++ID D + ++A NALLKSLEEPP+ F+L+ HA +L T+RSRCL ++F +L Sbjct: 110 RRRAVIIDAADQLEKSAVNALLKSLEEPPEGTFFLLVVHALGRLLPTVRSRCLVVRFQTL 169 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 S+ ++ +AL E + D++R + +A GS A+ D K + + L+ Sbjct: 170 SDADVARALDEAAPGLDSDTRRAALAVAG-GSPGAALAFAEQDLGKAQAVFAALL 223 >gi|221632038|ref|YP_002521259.1| DNA polymerase III subunit tau and gamma [Thermomicrobium roseum DSM 5159] gi|221156980|gb|ACM06107.1| DNA polymerase III tau and gamma subunits [Thermomicrobium roseum DSM 5159] Length = 350 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 9/186 (4%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE + L++ SG++HHA L G GIG+ TL F +A +L + P C Sbjct: 18 IIGHEGAVRTLARAIESGQVHHAYLLAGPAGIGRTTLAFVFAQALLCEGAAEQRPCGTCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++A D + + K +++D++R +R LSL G WRV Sbjct: 78 ------SCQRIARRVHPDVTRIGLDTGAEEAKQ---VSIDQVRELRASLSLRPLEGAWRV 128 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++D + ++R AA+ALLK+LEEPP + +L++ + + TIRSRC +I L + Sbjct: 129 AIVDDAERLSREAADALLKTLEEPPPYAVLVLVAEDAQALPETIRSRCQTIVLQPLPISV 188 Query: 194 LYKALE 199 + +ALE Sbjct: 189 VARALE 194 >gi|294083927|ref|YP_003550684.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663499|gb|ADE38600.1| ATPase involved in DNA replication [Candidatus Puniceispirillum marinum IMCC1322] Length = 360 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 11/194 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-----FSKAP 68 +FGH D + L+ S R+HHA L G GIGKA + + A +L + + F P Sbjct: 18 MFGHADFKTALASARSSKRIHHAWLLTGPNGIGKAGMAYMAAAWLLSDAEPAASLFGDVP 77 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYL-SYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + D P KQ+ + A DF+ + + K+G+ I +D+IR + F+ Sbjct: 78 ADF-SLDLNDPGTKQVLNGAHPDFMAIYPREEDNKSGQ----IKIDQIRAMHPFMMHKPG 132 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G RV +ID +D +NRN ANA+LK LEEPP+ + LIS + TI SRC + Sbjct: 133 RGKMRVAVIDSMDEINRNGANAMLKLLEEPPENTIIFLISSRPGRLPPTILSRCRQFRMQ 192 Query: 188 SLSENNLYKALEQL 201 LS++N KAL + Sbjct: 193 RLSQDNCRKALTSI 206 >gi|170747927|ref|YP_001754187.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM 2831] gi|170654449|gb|ACB23504.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM 2831] Length = 350 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 158/326 (48%), Gaps = 21/326 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L GH + +GR+HHA L G GIGKATL +R A +L P P + Sbjct: 28 LVGHAAAADAFAAAIAAGRLHHAWLIGGAPGIGKATLAYRVARRLLAYP-AGGGPAGLAV 86 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 P + ++A + + + L + T I+VD +RR + F S A++G WR Sbjct: 87 PA-GDAVLGKVAGLSHPNLVVLRRHRSAGAKTLPTKISVDAVRRALDLFASTAADSG-WR 144 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D + +N NAANALLK LEEPP + LF+++SH +L TIRSRC ++ L Sbjct: 145 VCILDSAEDLNANAANALLKVLEEPPPRALFLILSHQPGRLLPTIRSRCRALMLRPLPAE 204 Query: 193 NLYKALEQL-KIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 ++ + + L + + + A GSVARA+ +L +++ L+ R Sbjct: 205 DVARVVRGLPEPFPQPDETALARALAQCEGSVARALAMLDPVTAGLVAEIETLLARARTP 264 Query: 250 YALQKMQQIADELLSQDQKIAF----DFLIEFILKEI--CKSAKAAALSGQLEEADQIAQ 303 ++ ++A+ L +D + F D ++ F+ EI + A L+ +E AD+ Sbjct: 265 D-WGRVLKLAETLAGRDAEARFEAAQDAVLRFVSAEIDRRRDEPPARLAALVEVADR--- 320 Query: 304 IYFSLVKRVHAFSMYNLDRRQMIFHL 329 F R A +YNLDRR ++ L Sbjct: 321 --FGRAAREAA--IYNLDRRPVVLSL 342 >gi|85374071|ref|YP_458133.1| DNA polymerase III delta prime subunit [Erythrobacter litoralis HTCC2594] gi|84787154|gb|ABC63336.1| DNA polymerase III delta prime subunit [Erythrobacter litoralis HTCC2594] Length = 320 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 15/306 (4%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H +I++ RMHH + G QG+GK+ A ++ + AP PD Sbjct: 5 HAEIQREWDAALAGPRMHHGWILAGRQGLGKSEFALDAARQLVAR--GATAP----QPDG 58 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 P + + S D + K + + I+VD+IR ++ L+ G R I+I Sbjct: 59 EHPDI-HLLSRPPKDDKEVRKRAEGKPFERKRNISVDQIRAMQRRLTTRPTLGRNRAIII 117 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 DP D + + A+NALLKSLEEPP FIL++H +L TIRSRC ++FN L + + K Sbjct: 118 DPADDLEKGASNALLKSLEEPPVGTFFILVTHRLARLLPTIRSRCRVLRFNPLPDAQVEK 177 Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 L++ + R+ AA GS AIK + D + + D++ + + L+ Sbjct: 178 LLKEESPSSDAAVREAAVAAAKGSPGAAIKFIEQDLAPLAAIMRDIVAQGDRAFELRGAL 237 Query: 257 QIADELLSQDQKIAFDF-LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 A +++ F L IL E + +A L Q+A + +V Sbjct: 238 SAAIGARPNRERVQATFDLARTILAEQMATVPSAQLM-------QLADAHADMVALAGQA 290 Query: 316 SMYNLD 321 YN D Sbjct: 291 PTYNFD 296 >gi|90415871|ref|ZP_01223804.1| DNA polymerase III, delta prime subunit [marine gamma proteobacterium HTCC2207] gi|90332245|gb|EAS47442.1| DNA polymerase III, delta prime subunit [marine gamma proteobacterium HTCC2207] Length = 311 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 HED L+ SGR+ HA+L G+QGIGK L A ++ + + K C Sbjct: 9 HEDAWASLNSSIDSGRLPHAVLISGDQGIGKLRLATALAQRLICSAEMVKYACGTCKT-- 66 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C+ F SH D YL + GK I +D +R++ LS TA G W+V +I Sbjct: 67 CNLF--SAGSHP--DITYLEPE---EKGK---AIKIDPVRKLCESLSKTAQQGGWKVAII 116 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 P + MN NAANALLK+LEEP K L IL+SH + +TIRSRC Sbjct: 117 APAEAMNINAANALLKNLEEPQSKTLLILVSHRPSRLSATIRSRC 161 >gi|21672731|ref|NP_660798.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008380|sp|Q8K983|DPO3X_BUCAP RecName: Full=DNA polymerase III subunit gamma gi|21623376|gb|AAM68009.1| DNA polymerase III subunit tau [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 363 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 137/277 (49%), Gaps = 28/277 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + I K +S + G++HHA L G +G+GK T+ A + Sbjct: 5 ILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C +++ DF+ + + K V+EIR I Sbjct: 65 EIGITSLPCRKCT------ICQEIEKGICLDFIEIDAASRTK---------VEEIREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T + ++V +ID V ++R++ NALLK+LEEPPQ + FIL + I TIRSR Sbjct: 110 NIYYTPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL----HYDC 232 CL K N LSE +++ L+ LK G + + +KI A GS+ A+ +L H Sbjct: 170 CLHFKLNILSEEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSK 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 + I + + +++ IP +++A + LL QD K Sbjct: 230 NNINLKNTTEMLGIPNKKHAF----LLTKFLLEQDSK 262 >gi|94496390|ref|ZP_01302967.1| DNA polymerase III delta prime subunit [Sphingomonas sp. SKA58] gi|94424136|gb|EAT09160.1| DNA polymerase III delta prime subunit [Sphingomonas sp. SKA58] Length = 322 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFSKAPVRM 71 GHE + L SGRMHH +F G +GIGKA+ A +L P + + Sbjct: 5 IGHEAQARMLLAQAQSGRMHHGWIFAGPKGIGKASFARALALRLLAGAAGPAIDGDGLAV 64 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P ++ A Y + K G I+VD++R ++ + + Sbjct: 65 PEDHPIRRLIEATAHPD-----YAELAPIEKDGVTARNISVDQVRGLQRLIQSAPSLSPR 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R++++D D + R AANALLK+LEEPP +LF+L+SHA +L TIRSRC +++F++L++ Sbjct: 120 RIVVVDSADDLERGAANALLKTLEEPPSDMLFLLVSHAPGRLLPTIRSRCRTLRFDALND 179 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + + L + + D + + A GS +A++ + +I ++ +L Sbjct: 180 AAMRRVLIEAQPGLSDVEMTALVHAGEGSPGQAMRFAGLNLAEIETALGEL 230 >gi|148553409|ref|YP_001260991.1| DNA polymerase III subunit delta' [Sphingomonas wittichii RW1] gi|148498599|gb|ABQ66853.1| DNA polymerase III, delta prime subunit [Sphingomonas wittichii RW1] Length = 325 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 26/225 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL-------------GFRYAGHVLQ 60 L GH++ + SGR+HHA L G +G+GKA+ G R ++ Sbjct: 3 LVGHDEQVAAFREAADSGRLHHAWLLTGPEGVGKASFALAAATRLLADAAGPRVGLPGIE 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 PD P V + + + D L+ K+ I+++++R ++ Sbjct: 63 TPD-------------DHPIVNYIRAGSHPDIRILARLTKDKSEDLARSISIEQVRSLQS 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T + RV++ID +D + R AANALLK+LEEPP F LISHA +L TIRSR Sbjct: 110 LFATTPSLSPRRVVIIDAIDDLERPAANALLKNLEEPPAGTTFFLISHAPGRLLPTIRSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 C ++F L + ++ AL + + D + GS RA+ Sbjct: 170 CRQLRFAPLGDADMRLALRRALPEEPGDEIDSLVSVGNGSPGRAL 214 >gi|302878049|ref|YP_003846613.1| DNA polymerase III, delta prime subunit [Gallionella capsiferriformans ES-2] gi|302580838|gb|ADL54849.1| DNA polymerase III, delta prime subunit [Gallionella capsiferriformans ES-2] Length = 331 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 11/157 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R LLF+G +GIGK L YA +L Q+P + +C C F++ SH Sbjct: 21 RASQGLLFQGMKGIGKLDLAISYARALLCQHPSGNGFSCGVC--PSCHWFIQ--GSHP-- 74 Query: 91 DFLYL---SYSLNPKTGKWRT-VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 DF + S + + GK + I+VD+IR + F+ +TA+ G RV++I P + MN NA Sbjct: 75 DFRMVQPESETEEVEAGKKPSRQISVDQIRALSDFMGMTAHQGGRRVVIIHPAEAMNTNA 134 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ANALLK+LEEPP +LFIL++H +L T+ SRCLS Sbjct: 135 ANALLKNLEEPPPGLLFILVTHKPEVLLPTLLSRCLS 171 >gi|291614002|ref|YP_003524159.1| DNA polymerase III, delta prime subunit [Sideroxydans lithotrophicus ES-1] gi|291584114|gb|ADE11772.1| DNA polymerase III, delta prime subunit [Sideroxydans lithotrophicus ES-1] Length = 335 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASH--- 87 R+ HA+L +G QGIGK L +A +L + P+ CN C F ++ Sbjct: 21 RLPHAVLLKGAQGIGKLDLAMNFAQSLLCEKPNADGTACHTCNS--CHWFEQENHPDFRL 78 Query: 88 ALHDFLYLSYSLNPKTG--KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 D L + + K G K I+VD+IR + F +L+A+ G +RV++I P + MN N Sbjct: 79 VQPDALSSADEGDEKQGGKKPSREISVDQIRNLSNFANLSAHCGGYRVVLIHPAESMNNN 138 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AAN+LLK+LEEP +LF+LISH +L TI SRCL ++ + LEQ + Sbjct: 139 AANSLLKTLEEPTDNLLFLLISHKPQQLLPTILSRCLGFTVSTPTRELGTAWLEQQGV 196 >gi|85708667|ref|ZP_01039733.1| DNA polymerase III delta prime subunit [Erythrobacter sp. NAP1] gi|85690201|gb|EAQ30204.1| DNA polymerase III delta prime subunit [Erythrobacter sp. NAP1] Length = 324 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/320 (26%), Positives = 132/320 (41%), Gaps = 43/320 (13%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 HE + RMHH L G+ G+GK DF+ A R + Sbjct: 7 HEGPWREWRGAMSGARMHHGWLLAGKSGLGKH--------------DFAMAAARELVAEE 52 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV------------ITVDEIRRIRYFLSL 124 P + H D + L+Y PK K I VD++R ++ L+ Sbjct: 53 GIP--QPPGDHP--DIIVLTY--GPKNDKEARAAADGKDFERARSIRVDQVRAMQRRLNT 106 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G RV++IDP D M AANALLKSLEEPPQ F+L++H +L TIRSRC + Sbjct: 107 RPTLGSRRVVIIDPADDMEVAAANALLKSLEEPPQGTFFMLVTHRPSRLLPTIRSRCRIL 166 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 +F L + L + L+ I G R AA GS A++ D + ++ L+ Sbjct: 167 RFPILKDVQLEEMLDASGIAGGGDARLAAIRAAEGSYGAALRFAEQDLGPLANAISTLLT 226 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQI 301 + + + ++ + + ++ D + E ++ ++ +S A +L Sbjct: 227 --KGDPQMTGRSELTRLIGGRADRVRLDAVFELAQAVVADLARSTDNPAQRAKL------ 278 Query: 302 AQIYFSLVKRVHAFSMYNLD 321 + LVK YN D Sbjct: 279 VDTHRDLVKLAAQAPTYNFD 298 >gi|94499608|ref|ZP_01306145.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65] gi|94428362|gb|EAT13335.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 14/161 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + LSQ S R+ HA+L G+QG+GK +A VL + + P C C F Sbjct: 15 QTLSQQLSSQRLGHAVLLTGQQGVGKRVFLKEFAQLVLCHQGEQQTPCGECAS--CRLFT 72 Query: 82 KQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 +H DF+ ++ P+ TGK I +D+IRR+ F++ TA+ G +V+++ P + Sbjct: 73 A--GNHP--DFI----TVEPEETGK---AIKIDQIRRVTDFVNTTASQGQRKVVLLGPAE 121 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 MN NA+NALLKSLEEP +V +L SH +L+TI+SRC Sbjct: 122 VMNINASNALLKSLEEPSSQVTMLLYSHQPSRLLATIKSRC 162 >gi|296284127|ref|ZP_06862125.1| DNA polymerase III delta prime subunit [Citromicrobium bathyomarinum JL354] Length = 319 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 8/170 (4%) Query: 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 S RMHHA + G++G+GK F A ++ APV +PD Q+ +H Sbjct: 17 ASPRMHHAWILAGKKGLGKHDFAFAAARELVAI--GRDAPVAENDPD------IQLLTHL 68 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + + I++D+IR ++ L+ G +R I+I+P D + R+AAN Sbjct: 69 PKDDKEAKKAEKGEAFETKRNISIDQIRAMQARLTTRPTLGAFRAIIIEPADDLERSAAN 128 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ALLKSLEEPP F+L++H +L TIRSR ++FN LS + AL Sbjct: 129 ALLKSLEEPPAGTFFLLVTHRPGLLLPTIRSRARILRFNPLSMGAVEDAL 178 >gi|292669922|ref|ZP_06603348.1| DNA polymerase III, delta prime subunit [Selenomonas noxia ATCC 43541] gi|292648719|gb|EFF66691.1| DNA polymerase III, delta prime subunit [Selenomonas noxia ATCC 43541] Length = 350 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 100/213 (46%), Gaps = 22/213 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN----PDFSKAPVRM 71 GH +I + L + R+ HALLF G +G+GK R HVL AP Sbjct: 29 GHAEIIRRLRFLAAAERLPHALLFTGAEGVGK-----RRTAHVLARTLLCAKGGDAPCGH 83 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + M + D+ ++ GK I D +R I S + Sbjct: 84 C--DSC----RTMEAGVHPDYFE---AVPEARGKGAAAIRTDAVREILVAASGAPISARR 134 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+I+ID D MN AAN LLK+LEEP +V+FIL++ A IL TIRSR + I F +L Sbjct: 135 RIILIDDADRMNETAANRLLKTLEEPSGEVIFILVTSACEAILPTIRSRAVRIAFGALPR 194 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 L AL + G D+ + A GS+ RA Sbjct: 195 TELETALAE---RGTDNGETIAAL-ADGSLGRA 223 >gi|58580509|ref|YP_199525.1| DNA polymerase III subunit delta' [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622468|ref|YP_449840.1| DNA polymerase III subunit delta' [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425103|gb|AAW74140.1| DNA polymerase III delta' subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366408|dbj|BAE67566.1| DNA polymerase III delta' subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 319 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 32/254 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I L+LT + G +V+++DP D +NR+A Sbjct: 71 THPDLQLISFVPNRTGDKLRTEIVIEQVREISQKLALTPHDGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL------EQL 201 NALLK+LEEP LIS + +TIRSRC ++F + L E+ Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLSQGVSERA 190 Query: 202 KIMGWDSKRDFVKIAAYG------SVARAIKILHYDCDKIISSYIDLIHIPRQ----EYA 251 G D+ R +AA +V RA+ D ++I S + + ++ A Sbjct: 191 AQEGLDAARGHPGLAAQWLREDGLAVRRAVA---QDLEQIASGRAGAVDVAQRWTNDGQA 247 Query: 252 LQKMQQIADELLSQ 265 Q+++ AD +L+Q Sbjct: 248 DQRLRHAADLVLAQ 261 >gi|188578555|ref|YP_001915484.1| DNA polymerase III subunit delta' [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523007|gb|ACD60952.1| DNA polymerase III delta' subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 319 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I L+LT + G +V+++DP D +NR+A Sbjct: 71 THPDLQLISFVPNRTGDKLRTEIVIEQVREISQKLALTPHDGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|149173502|ref|ZP_01852132.1| DNA polymerase III, tau/gamma subunit [Planctomyces maris DSM 8797] gi|148847684|gb|EDL62017.1| DNA polymerase III, tau/gamma subunit [Planctomyces maris DSM 8797] Length = 353 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 13/219 (5%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCN 73 GH I + L + R+ HALLF G GIGK + A + LQ P + R C Sbjct: 10 GHHPILEMLDRALSRSRLPHALLFSGAAGIGKKRVALHLAQCLFCLQTPADELSCCRTC- 68 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR---IRYFLSLTANTGY 130 D C KQMA+ D + + + +I D+ R + Y +SL G Sbjct: 69 -DSC----KQMAAGTHPDLISIECPPDKNILPLSLIIGDDDHRGREGVCYEMSLRPMVGD 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 R+ +ID D MN +ANALLK+LEEP L ILI+ IL TIRSRC I+FN L+ Sbjct: 124 RRIAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLIRFNRLT 183 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++ L +Q + D + +++A GS+ A ++L Sbjct: 184 QEDVAALLIDQQLVESEDQAIEIARLSA-GSLNIARQLL 221 >gi|166710970|ref|ZP_02242177.1| DNA polymerase III subunit delta' [Xanthomonas oryzae pv. oryzicola BLS256] Length = 319 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I L+LT + G +V+++DP D +NR+A Sbjct: 71 THPDLQLVSFVPNRTGDKLRTEIVIEQVREISQKLALTPHDGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|289664116|ref|ZP_06485697.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669135|ref|ZP_06490210.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 319 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I LSLT G +V+++DP D +NR+A Sbjct: 71 THPDLQLISFIPNRTGDKLRTEIVIEQVREISQKLSLTPQYGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPVRLPATIRSRCQRLEFK 170 >gi|114320571|ref|YP_742254.1| DNA polymerase III, delta prime subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114226965|gb|ABI56764.1| DNA polymerase III, delta prime subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 337 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 24/164 (14%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPDPCS 78 L + SG++ HALL G G GK+ LG GH+++ P C + C Sbjct: 32 LLRQAASGQLPHALLLAGPAGTGKSLLG----GHLVRALLCHQPGEGGRACGRC--ESCR 85 Query: 79 PFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + LH DF +L+ P+ R VITVD +R + FL+L+A G WR+ +ID Sbjct: 86 ALAR-----GLHPDFRHLA----PEE---RAVITVDAVRALGRFLNLSARFGGWRIALID 133 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 P D + NAAN+LLK+LEEPP L +L+S + +TIRSRC Sbjct: 134 PADTLTVNAANSLLKTLEEPPATTLLVLVSSRPAQLPATIRSRC 177 >gi|117925166|ref|YP_865783.1| DNA polymerase III subunit delta' [Magnetococcus sp. MC-1] gi|117608922|gb|ABK44377.1| DNA polymerase III, delta prime subunit [Magnetococcus sp. MC-1] Length = 343 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 15/229 (6%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK----ATLGFRYAGHVLQNPDFSKA 67 +++ G ++ L+ +GR+ H LLF G G+GK L R + + A Sbjct: 5 EQIMGQQEAMDALTGAVRTGRLAHGLLFYGPAGVGKRLTARALVRRTLCQQVAEGALNAA 64 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 R+ + K++ D L++ + RT + VD+IR + F++LT Sbjct: 65 GDRLLDGCGVCASCKRVEGGGHPDLLWMEKE------QGRTRLRVDQIRELAQFVALTPL 118 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++V +ID V MN +AANALLK+LEEPP L IL + +L TIRSRC +++F Sbjct: 119 LSPYKVAVIDEVSLMNASAANALLKTLEEPPPHSLLILTTCTPGALLPTIRSRCQAVRFV 178 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 L E L + L Q + +++A GS+ RA+++ CD + Sbjct: 179 PLDEQTLGQLLRQHTSLEPGMVESAMEMAG-GSIGRALEL----CDGTL 222 >gi|254420182|ref|ZP_05033906.1| DNA polymerase III, delta' subunit domain protein [Brevundimonas sp. BAL3] gi|196186359|gb|EDX81335.1| DNA polymerase III, delta' subunit domain protein [Brevundimonas sp. BAL3] Length = 330 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-DFSKAPVRMCNPDPCSPFVKQMAS 86 + GR+HHA L G +G GKAT +R A +L D ++ P+ DP S + S Sbjct: 26 WERGRLHHAWLLCGVEGTGKATFAYRAARRLLGAAADPARGPLGARREDPVSRLISAQ-S 84 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D L L + + GK + I+VD+ R + F S + + RV +ID D +N NA Sbjct: 85 HP--DLLVLERLV--EGGKTKKSISVDQSRDLPEFFSKSPSQAQHRVAIIDAADDLNINA 140 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ANALLK LEEPP++ + L++HA +L+TIRSRC + F Sbjct: 141 ANALLKVLEEPPERGVLFLVTHAPGRLLATIRSRCRRLSF 180 >gi|325917378|ref|ZP_08179593.1| DNA polymerase III, delta prime subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536419|gb|EGD08200.1| DNA polymerase III, delta prime subunit [Xanthomonas vesicatoria ATCC 35937] Length = 319 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I LSLT G +V+++DP D +NR A Sbjct: 71 THPDLQLISFIPNRTGDKLRTEIVIEQVREISQKLSLTPQYGIAQVVIVDPADAINRAAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|294627952|ref|ZP_06706531.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666522|ref|ZP_06731763.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597866|gb|EFF42024.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603666|gb|EFF47076.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 319 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L L + +TG K RT I ++++R I L+LT G +V+++DP D +NR+A Sbjct: 71 THPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|304437473|ref|ZP_07397431.1| DNA-directed DNA polymerase III subunit delta' [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369523|gb|EFM23190.1| DNA-directed DNA polymerase III subunit delta' [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 347 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 24/217 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF----SKAPVRM 71 GH + L +GR+ HAL+ G +G+GK R HVL AP Sbjct: 26 GHAAVIARLRHLAVNGRLPHALMLTGTEGVGK-----RRTAHVLARTLLCTAGGDAPCGH 80 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C + MA+ D+ + ++P++ GK +I D +R I S + + Sbjct: 81 C--DSC----RTMAAGVHPDY----FEVSPESRGKSAAMIRADAVRDILIAASESPRSAD 130 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 R+I+ID V MN AAN LLK+LEEPP VLF+L++ A +L TIRSR + I F ++ Sbjct: 131 RRIILIDDVHCMNEVAANRLLKTLEEPPATVLFLLVTSAWDAVLPTIRSRAVRIAFGTVP 190 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L+ I ++ + A GS+ RA ++ Sbjct: 191 RAEIAAELQGRGIEAAET----IAALADGSIGRAERL 223 >gi|325925299|ref|ZP_08186702.1| DNA polymerase III, delta prime subunit [Xanthomonas perforans 91-118] gi|325544290|gb|EGD15670.1| DNA polymerase III, delta prime subunit [Xanthomonas perforans 91-118] Length = 319 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVL-----------AASPDPTLAQRTRQLIAAG 70 Query: 89 LHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L L + +TG K RT I ++++R I L+LT G +V+++DP D +NR+A Sbjct: 71 THPDLQLVSFIPNRTGDKLRTEIIIEQVREISQKLALTPQYGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|78046707|ref|YP_362882.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035137|emb|CAJ22782.1| DNA polymerase III delta' subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 319 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVL-----------AASPDPTLAQRTRQLIAAG 70 Query: 89 LHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L L + +TG K RT I ++++R I L+LT G +V+++DP D +NR+A Sbjct: 71 THPDLQLVSFIPNRTGDKLRTEIIIEQVREISQKLALTPQYGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|91763269|ref|ZP_01265233.1| probable DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|91717682|gb|EAS84333.1| probable DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 21/237 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSK 66 P N +++G E+ LS Y ++ + +L G++G+GK+TL + ++L +N D+ Sbjct: 5 PSENTKIYGMENFFHELSGLYKQKKLPNKILLSGKKGLGKSTLAYHLINYILSENEDYKY 64 Query: 67 APVRMC-NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C + D S + Q SH +F YL L K I V +IR + + + + Sbjct: 65 NLENFCIHKDNKSYKLLQNNSHP--NF-YLIDLLTEKKS-----IDVGQIREMISYTNKS 116 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 R I+ID V+ +N+N+ NALLK +EEP + V FILI+++ IL T++SRCL+ K Sbjct: 117 TFNNMARFILIDNVENLNKNSVNALLKIIEEPNENVFFILINNSEKNILPTLKSRCLTFK 176 Query: 186 FN-----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 N SLS +NL L + +D ++ Y S I + ++ +K I+ Sbjct: 177 INFTFNESLSISNLILDKNVLDFINYDL------LSFYNSPGEIISLFNFAEEKSIN 227 >gi|325108214|ref|YP_004269282.1| DNA polymerase III delta prime subunit [Planctomyces brasiliensis DSM 5305] gi|324968482|gb|ADY59260.1| DNA polymerase III, delta prime subunit [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 128/267 (47%), Gaps = 23/267 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPV 69 ++ +GHE + ++ GR+ HA LF G GIGK + A +L + PD Sbjct: 4 EQYYGHEQKREMFARALQRGRLGHAYLFVGPSGIGKRSFARLLAQSLLCTRRPDGELTAC 63 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV---DEIRRIR----YFL 122 C+ +Q+ + D + + GK I V RR R + L Sbjct: 64 GECS------GCRQVLTRNHPDLMEVGL----PEGKSELPIDVFVGSPERRGREGLCHEL 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 SL+A G +R+ +ID D MN +ANALLK+LEEP + ILI+ + ++ TIRSRC Sbjct: 114 SLSAMQGGYRIAIIDDADRMNIASANALLKTLEEPGPGAVLILIAEDADQVIQTIRSRCQ 173 Query: 183 SIKFNSLSENNLYKALE-QLKIMGWDSKR---DFVKIAAYGSVARAIKILHYDCDKIISS 238 + F L+EN+L KA+E QL + + V A+GSV +A+ ++ D + Sbjct: 174 QLYFGPLNENDLRKAVEDQLARQEPGESQLPLETVLAGAHGSVEQALGRMNRSPDFAAAE 233 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQ 265 + R ++ ++ + A+ LLSQ Sbjct: 234 KSLQDMLARPQWTAARLSKAAEPLLSQ 260 >gi|71083691|ref|YP_266411.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|71062804|gb|AAZ21807.1| probable DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 310 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 21/237 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSK 66 P N +++G E+ LS Y ++ + +L G++G+GK+TL + ++L +N D+ Sbjct: 5 PSENTKIYGMENFFHELSGLYKHKKLPNKILLSGKKGLGKSTLAYHLINYILSENEDYKY 64 Query: 67 APVRMC-NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C + D S + Q SH +F YL L K I V +IR + + + + Sbjct: 65 NLENFCIHKDNKSYKLLQNNSHP--NF-YLIDLLTEKKS-----IDVGQIREMISYTNKS 116 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 R I+ID V+ +N+N+ NALLK +EEP + V FILI+++ IL T++SRCL+ K Sbjct: 117 TFNNMARFILIDNVENLNKNSVNALLKIIEEPNENVFFILINNSEKNILPTLKSRCLTFK 176 Query: 186 FN-----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 N SLS +NL L + +D ++ Y S I + ++ +K I+ Sbjct: 177 INFTFNESLSISNLILDKNVLDFINYDL------LSFYNSPGEIISLFNFAEEKSIN 227 >gi|121534355|ref|ZP_01666179.1| DNA polymerase III, delta prime subunit [Thermosinus carboxydivorans Nor1] gi|121307125|gb|EAX48043.1| DNA polymerase III, delta prime subunit [Thermosinus carboxydivorans Nor1] Length = 338 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 19/215 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++ K L GR+ HALLF G +G+GK + +A +L + AP C Sbjct: 6 IVGHDETIKMLQGMLRRGRLPHALLFAGPEGVGKTLVAKAFAAALLCQE--AAAPCGRC- 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + A+ H L + I +D+IR++++ +L A WR+ Sbjct: 63 ------LICRQAAEFAHPALQVIVPAG-------NTIKIDQIRQLQHEAAL-AGGDEWRL 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I+ V+ M AAN+LLK LEEPP +++FIL++ +LSTIRSRC ++F L Sbjct: 109 CIIEQVERMTAQAANSLLKLLEEPPPRLIFILLTALPHAVLSTIRSRCQVLRFAPLPPEV 168 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L AL + + G ++ R +++ G + A+ +L Sbjct: 169 LAAALSR-RGYGEEAARVAARLSG-GRMGTALALL 201 >gi|149184556|ref|ZP_01862874.1| DNA polymerase III delta prime subunit [Erythrobacter sp. SD-21] gi|148831876|gb|EDL50309.1| DNA polymerase III delta prime subunit [Erythrobacter sp. SD-21] Length = 315 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 32/198 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE + RMHHA L G++G+GKA+ F++A R Sbjct: 3 MVGHEAAWEAWRAARSGERMHHAWLLAGKKGLGKAS--------------FAQAAARE-- 46 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSL-NPKTGKWRT---------VITVDEIRRIRYFLS 123 + A D L+Y N K R I VD++R ++ L+ Sbjct: 47 ------LLGAQAEGEHPDIHTLTYGPKNKDEAKKRDDGKAYELARGIKVDQVRAVQRRLT 100 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G RV++IDP D M +A+NALLKSLEEPPQ F+L++H+ +L TIRSRC + Sbjct: 101 TRPTMGSKRVVIIDPADDMEVSASNALLKSLEEPPQGTYFLLVAHSPARLLPTIRSRCRT 160 Query: 184 IKFNSLSENNLYKALEQL 201 ++F +L + + L L Sbjct: 161 VRFPTLPASAMDDLLRDL 178 >gi|188992730|ref|YP_001904740.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. campestris str. B100] gi|167734490|emb|CAP52700.1| DNA polymerase III delta' subunit [Xanthomonas campestris pv. campestris] Length = 319 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G G+GK + A HVL + PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPDGLGKRAVALALAEHVLAS-----------APDPAVAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I LSLT G +V+++DP D +NR A Sbjct: 71 THPDLQLVSFIANRTGDKLRTEIVIEQVREISQKLSLTPQYGIAQVVIVDPADAINRAAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|21230482|ref|NP_636399.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769524|ref|YP_244286.1| DNA polymerase III subunit delta' [Xanthomonas campestris pv. campestris str. 8004] gi|21112047|gb|AAM40323.1| DNA polymerase III delta' subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574856|gb|AAY50266.1| DNA polymerase III delta' subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 319 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G G+GK + A HVL + PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPDGLGKRAVALALAEHVLAS-----------APDPAVAQRTRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I LSLT G +V+++DP D +NR A Sbjct: 71 THPDLQLVSFIANRTGDKLRTEIVIEQVREISQKLSLTPQYGIAQVVIVDPADAINRAAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|320530687|ref|ZP_08031732.1| DNA polymerase III, delta' subunit [Selenomonas artemidis F0399] gi|320137065|gb|EFW29002.1| DNA polymerase III, delta' subunit [Selenomonas artemidis F0399] Length = 351 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 15/210 (7%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH +I + L + GR+ HAL+F G G+GK R L AP C + Sbjct: 30 GHTEIIRRLRRLVSGGRLPHALVFSGAAGVGKRRTA-RVLARTLLCAAGGDAPCGHC--E 86 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 C + MA+ D+ + P+ GK +I D +R I S RVI Sbjct: 87 AC----RTMAAGVHPDY----FETVPEVRGKSAAMIRTDAVRDILVEASAAPVLAARRVI 138 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID + MN AAN LLK+LEEP ++LFIL++ A +L TIRSR + + F +L ++ Sbjct: 139 LIDGAECMNDQAANRLLKTLEEPLGEILFILVASAYDALLPTIRSRAVRVAFGTLPAADI 198 Query: 195 YKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AL + + MG D+ + A GS+ RA Sbjct: 199 EAALAE-RGMGTDAA--VIAALADGSLGRA 225 >gi|325919090|ref|ZP_08181149.1| DNA polymerase III, delta prime subunit [Xanthomonas gardneri ATCC 19865] gi|325550399|gb|EGD21194.1| DNA polymerase III, delta prime subunit [Xanthomonas gardneri ATCC 19865] Length = 319 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPDGLGKRAVALALAEHVLAS-----------SPDPALAQRSRQLIAAG 70 Query: 89 LH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D +S+ N K RT I ++++R I LSLT G +V+++DP D +NR A Sbjct: 71 THPDLQLISFIPNRTGDKLRTEIVIEQVREISQKLSLTPQYGIAQVVIVDPADAINRAAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|255659093|ref|ZP_05404502.1| DNA polymerase III, delta prime subunit [Mitsuokella multacida DSM 20544] gi|260848537|gb|EEX68544.1| DNA polymerase III, delta prime subunit [Mitsuokella multacida DSM 20544] Length = 334 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 90/185 (48%), Gaps = 11/185 (5%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GHE ++ L GR+ HALLF G GIGK +G A +L D P C + Sbjct: 10 GHEKQKEALRTMLREGRLPHALLFTGPDGIGKRMVGRVLAAAILC--DAEDGPCGHC--E 65 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C Q+ SH D+L + N GK I ++ IR ++ +S R ++ Sbjct: 66 SCRAM--QLGSHP--DYLEVVPEQN---GKSAAQIRIEAIRSMQTQVSRYPVLAKRRTVL 118 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ID D MN A N+LLK+LEEP V FIL++ A +L TI SRC+ + F LS + Sbjct: 119 IDDADRMNEAAQNSLLKTLEEPEGPVTFILVTSARSALLDTILSRCMPVAFGMLSPQEMR 178 Query: 196 KALEQ 200 L Q Sbjct: 179 SVLLQ 183 >gi|238927562|ref|ZP_04659322.1| DNA polymerase III, delta prime subunit [Selenomonas flueggei ATCC 43531] gi|238884487|gb|EEQ48125.1| DNA polymerase III, delta prime subunit [Selenomonas flueggei ATCC 43531] Length = 346 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 18/211 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH +I + L + G + HAL+F G GIGK R L AP C D Sbjct: 26 GHAEIIRCLRRLAADGHLPHALIFTGAAGIGKRRTA-RVLARTLLCAAEGNAPCGRC--D 82 Query: 76 PCSPFVKQMASHALH-DFLYLSYSLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C +M + +H D+ + + P+ GK +I D +R I S + R+ Sbjct: 83 DC-----RMTAAGVHPDY----FEVIPEARGKGAAMIRADAVRDILIAASESPQRAGRRI 133 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I+ID V MN AAN LLK+LEEPP VLF+L++ A +L TIRSR + I F L Sbjct: 134 ILIDGVHSMNEVAANRLLKTLEEPPATVLFLLVTDAWDAVLPTIRSRAVRIAFGPLPRAE 193 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 + L++ I + + + A GS+ RA Sbjct: 194 IAAELQRRGI----AHAETIAALADGSLGRA 220 >gi|320102454|ref|YP_004178045.1| DNA polymerase III subunit delta' [Isosphaera pallida ATCC 43644] gi|319749736|gb|ADV61496.1| DNA polymerase III, delta prime subunit [Isosphaera pallida ATCC 43644] Length = 348 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 18/216 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCN 73 GH+ + + L SGR+ HAL+F G +GIGK R A +L ++P+ P C Sbjct: 8 GHDQVVETLRAVMHSGRVPHALIFAGPEGIGKNAFATRLAQALLCTRSPEHRLEPCGQC- 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P Q+ + + D L ++ + R+ + + +R + L L +G+ R+ Sbjct: 67 -----PSCLQVQAGSHPDLLRVAKPED------RSELPIQAMRELCRDLGLKPMSGHRRI 115 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I+ M+ AANA LK+LEEPP + IL++ ++ +L TI SRC I+F L+E++ Sbjct: 116 AIIEDAQTMSDEAANAFLKTLEEPPPGAVLILLTTSTELMLDTILSRCRVIRFEPLNESD 175 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKI 227 L L + S ++ ++A + GSV RA+ + Sbjct: 176 LADVLIDKGLAA--SPQEARRLAHWGDGSVERALGL 209 >gi|21241887|ref|NP_641469.1| DNA polymerase III subunit delta' [Xanthomonas axonopodis pv. citri str. 306] gi|21107271|gb|AAM36005.1| DNA polymerase III delta' subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 319 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMASHA 88 +GR+ H LL G +G+GK + A HVL + +PDP + +Q+ + Sbjct: 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLAS-----------SPDPALAQRTRQLIAAG 70 Query: 89 LHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L L + +TG K R I ++++R I L+LT G +V+++DP D +NR+A Sbjct: 71 THPDLQLVSFIPNRTGDKLRNEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSAC 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 NALLK+LEEP LIS + +TIRSRC ++F Sbjct: 131 NALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 >gi|326387757|ref|ZP_08209363.1| DNA polymerase III, delta prime subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326207803|gb|EGD58614.1| DNA polymerase III, delta prime subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 329 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP----- 68 L GHE + + RMHHA L G +G+GKA A ++ P + P Sbjct: 12 LIGHEAVWREWRTARAGHRMHHAWLLAGREGVGKAGFARAAAVDLVAEPGIPQPPPEHHP 71 Query: 69 -VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + P P + A YL+ + I+VD++R ++ L Sbjct: 72 DIHWLRPLPAN---DDEAKKRDDGRPYLT----------KRNISVDQVREMQKRLVTRPT 118 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G R ++ID D + + + NALLKSLEEPPQ F+L+ H +L T+RSRC ++F Sbjct: 119 LGSRRAVIIDAADLLEKASVNALLKSLEEPPQGTFFLLVVHQPGRLLPTVRSRCQVLRFR 178 Query: 188 SLSENNLYKALEQL 201 L + + AL++L Sbjct: 179 PLEPDEMGHALDRL 192 >gi|190573066|ref|YP_001970911.1| DNA polymerase III subunit delta' [Stenotrophomonas maltophilia K279a] gi|190010988|emb|CAQ44597.1| putative DNA polymerase III, delta' subunit [Stenotrophomonas maltophilia K279a] Length = 318 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 12/172 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR+ H LL G G+GK + A HVL D + A +Q+ + Sbjct: 21 AGRLGHGLLICGPAGLGKREVALALADHVLARGDAAHAT-----------RTRQLITAGT 69 Query: 90 H-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H D +S+ N K RT I ++++R I L+LT G +V+++DP D +NR+AAN Sbjct: 70 HPDLQLVSFIPNKSGDKLRTEIVIEQVREITDKLALTPQYGVAQVVIVDPADAINRSAAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ALLK+LEEP LIS + TIRSRC ++F ++ L+Q Sbjct: 130 ALLKTLEEPQPGRYLWLISSDPARLPQTIRSRCQRLEFKLPPQHEALAWLQQ 181 >gi|91775852|ref|YP_545608.1| DNA polymerase III, delta prime subunit [Methylobacillus flagellatus KT] gi|91709839|gb|ABE49767.1| DNA polymerase III, delta prime subunit [Methylobacillus flagellatus KT] Length = 334 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 S R HHALL +G+QGIGK A +L Q+P C C FV+ SH Sbjct: 20 SERRHHALLLKGKQGIGKLAFASTLANAMLCQSPSADGYACGHC--ISCGWFVQN--SHP 75 Query: 89 LHDFLYLSYSLNPKTG-------KWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVD 140 + L P+T + T I+V +IR + FL L+++ + RV++I P D Sbjct: 76 DYRLLSPEQEDIPETPAASKKPVRKSTQISVTQIRELAGFLELSSHQSHGMRVVVIHPAD 135 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +N+ +ANALLK LEEPP V+FIL++ ++L TI SRC ++ SE LEQ Sbjct: 136 ALNQTSANALLKMLEEPPADVMFILVTSHPQSLLPTIMSRCQQLEMPVPSEQEALAWLEQ 195 Query: 201 LKI 203 I Sbjct: 196 QGI 198 >gi|110833936|ref|YP_692795.1| DNA polymerase III subunit delta' [Alcanivorax borkumensis SK2] gi|110647047|emb|CAL16523.1| DNA polymerase III, delta prime subunit [Alcanivorax borkumensis SK2] Length = 335 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H D L + GR+ HALL G +GIGK L A +L + P C Sbjct: 15 HSDAMAQLLDQHARGRLPHALLLSGPKGIGKLRLAESLAQTLLCEKPSAGLPCGHCQG-- 72 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C Q+++ H LY L+P+ K +T I +D++R++ F + TA +RV +I Sbjct: 73 C-----QLSTAGTHPDLY---RLSPEE-KSKT-IKIDQVRKLVAFATRTAQYSGYRVAII 122 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 P + +NRNA NALLK+LEEP + L +L+S +L TIRSRC Sbjct: 123 SPAEALNRNAQNALLKTLEEPGTQTLLLLVSDQPTLLLPTIRSRC 167 >gi|332169907|gb|AEE19162.1| DNA polymerase III subunit delta' [Krokinobacter diaphorus 4H-3-7-5] Length = 405 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 118/262 (45%), Gaps = 36/262 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--PD 63 FD + + G + I+ L+ +GR+ HA LF G G G + YA ++L N Sbjct: 21 FDAMLFSNVIGQDFIKNHLTTSVDAGRIAHAQLFIGLSGTGVLPMAIAYAQYILCNNAQG 80 Query: 64 FSKAPVRMCN---------------PDPCSPFVKQMASHALHDFLYLSY----SLNP--- 101 ++ + CN P +P VK SH + + + + NP Sbjct: 81 ENEGGSQACNLKFEHLSHPDLHFAFPVATTPEVK---SHPVSNNFMREWRSFITENPYGD 137 Query: 102 --------KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 K + I VDE I L+L + G ++V++I VD MN +N LLK Sbjct: 138 LFEWHQHLGIEKKQGQIGVDEASEINKALALKSYEGGYKVMIIWAVDKMNTAGSNKLLKL 197 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 LEEPP K LFILIS +I+ TI+SRC + F LSE + AL D++ + Sbjct: 198 LEEPPAKTLFILISENEDSIIDTIKSRCQVLHFPRLSEPQIADALITHHKTP-DAEAHKI 256 Query: 214 KIAAYGSVARAIKILHYDCDKI 235 A G +A+ +LH+D D I Sbjct: 257 AHQAQGDYQQAMHLLHHDGDDI 278 >gi|192360743|ref|YP_001982455.1| DNA polymerase III subunit delta' [Cellvibrio japonicus Ueda107] gi|190686908|gb|ACE84586.1| DNA polymerase III, delta prime subunit [Cellvibrio japonicus Ueda107] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 15/210 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VK 82 L+Q + ++ HAL+ G +GIGK R+ L +AP C + Sbjct: 19 LAQLIAARKLPHALMLAGPRGIGK-----RHFAEALAQLLLCQAPREGGACGQCRGCELN 73 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+H D L+L + GK I VD++R + L TA ++V++++P + M Sbjct: 74 KAATHP--DLLWLEPE---EAGK---AIKVDQVRELTDALGKTAQLSGYKVVVLEPAEAM 125 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N NAANALLKSLEEP L IL+SH +L TIRSRC + + + L L Sbjct: 126 NTNAANALLKSLEEPAANTLLILVSHTPSAVLPTIRSRCQLRAMAMPRQEQVVRWLSPL- 184 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 ++G D D + AA G+ A+ +L D Sbjct: 185 LVGRDIPADELLSAARGAPLIALSLLEGDA 214 >gi|328953819|ref|YP_004371153.1| DNA polymerase III, delta prime subunit [Desulfobacca acetoxidans DSM 11109] gi|328454143|gb|AEB09972.1| DNA polymerase III, delta prime subunit [Desulfobacca acetoxidans DSM 11109] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 16/216 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + FL Q +G M HALLF G +G+GK++ A + R + Sbjct: 6 ILGQNRVIGFLRQGLATGAMPHALLFLGAEGVGKSSTAQALAQAL-------NCEQRQTD 58 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C + + DFL + P + I +++IR +R L G W Sbjct: 59 QDACGHCRSCRMFTAGGHPDFL----QIKPSGEGGQPQIKIEQIRELRRQLGYPPLAGNW 114 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV+++ P + +N AANALLK+LEEPP + IL + +L TI SRC + F ++ + Sbjct: 115 RVVLLKPAETLNEAAANALLKTLEEPPAGNVLILTAIGERDLLPTIVSRCRRLTFGAIPQ 174 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAA-YGSVARAIK 226 + L + L++ K G ++ + A YGS+ A++ Sbjct: 175 SILIQELKRRK--GLSPEQAALAAAMHYGSLGLALQ 208 >gi|290967770|ref|ZP_06559323.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290782129|gb|EFD94704.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 363 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 18/243 (7%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 + D Y + G +++ L + + + HAL+F G G+GK TL +A ++Q+P Sbjct: 31 ESGMDVSYFDNVIGQCAVKEKLLHWVRTDHVPHALIFSGPDGVGKTTLACAFAEIIVQHP 90 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 F+ P ++ A A +Y + P+T + + V++ R++R L Sbjct: 91 VFTGG----------IPVLQDRAYAAFGSEVYF---IAPQTSQ----LKVEQFRQVREKL 133 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L + RV +ID + MN AN +L LEEPPQ V+FI+I++ +L+T+RSRC+ Sbjct: 134 FLGNVANHSRVCIIDHGETMNAAFANGMLTILEEPPQGVIFIIITNQPERLLTTVRSRCV 193 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 ++E L +AL + + V+ AA G+VARA +I+ D +D Sbjct: 194 ECMLAPVAEAALRQALAAAYPQSPEKREKAVR-AAAGNVARAYEIMAGDEKDYFQEAVDF 252 Query: 243 IHI 245 + I Sbjct: 253 LQI 255 >gi|86134876|ref|ZP_01053458.1| DNA polymerase III, delta' subunit [Polaribacter sp. MED152] gi|85821739|gb|EAQ42886.1| DNA polymerase III, delta' subunit [Polaribacter sp. MED152] Length = 380 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 42/260 (16%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--------- 59 ++NQ + G E I+ L + +GR+ HA LF G++G G + YA ++L Sbjct: 2 LFNQ-IIGQEHIKNHLKKSAENGRIPHAQLFVGKEGSGTLPMAIAYAQYLLCNFSSDADA 60 Query: 60 --------QNPDF------------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSL 99 Q+PD K PV + FV+ +L ++L + Sbjct: 61 CNLKCNKLQHPDLHFAFPVTTNDVVKKHPVSNLFLEDWRDFVENQPYGSLFNWLQ-HIGV 119 Query: 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 K G +I VDE + L L + G ++V++I + MN AAN LLK +EEPP+ Sbjct: 120 ENKQG----LINVDEAEDVVKKLKLKSFEGGFKVMIIWMAEKMNIAAANKLLKLIEEPPE 175 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL---EQLKIMGWDSKRDFVKIA 216 K +FILI+ I++TI+SRC ++ F L+E ++ AL Q++ D K + Sbjct: 176 KTVFILITENEEQIINTIKSRCQALHFPVLAEQDIINALIVNHQVE----DKKAANIAHQ 231 Query: 217 AYGSVARAIKILHYDCDKII 236 A G+ +A+ +LH D ++ Sbjct: 232 AEGNFNKALHLLHNDSSDLV 251 >gi|312142726|ref|YP_003994172.1| DNA polymerase III, delta prime subunit [Halanaerobium sp. 'sapolanicus'] gi|311903377|gb|ADQ13818.1| DNA polymerase III, delta prime subunit [Halanaerobium sp. 'sapolanicus'] Length = 329 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ED + L R+ HA LF G+ GIGK+ LG+ +A V R Sbjct: 6 ILGQEDAVEILQDEMEKQRISHAYLFSGQSGIGKSKLGYEFAKAVF---------CREEE 56 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C + ++M DF +S N + +I++D+IR ++ ++ Sbjct: 57 LDSCDKCISCRKMEHQNHPDFKIISILEN------KNIISIDQIRELKKEIAYKPYESEK 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I+ D M++ AAN+LLK+LE+PP IL++ + +L TI SRC +K +L++ Sbjct: 111 KLYIIESADQMSKEAANSLLKTLEDPPSFATIILLAEDTSRLLPTIISRCQQLKLKNLAQ 170 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L + I K + + A GS +A+ Sbjct: 171 GKIKKLLLEKGIAA--EKAEILSRTAQGSPGKAL 202 >gi|295698516|ref|YP_003603171.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia pediculicola USDA] gi|291157152|gb|ADD79597.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia pediculicola USDA] Length = 377 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + G + + K +S G++HH+ LF G G GK T+ ++ + Sbjct: 8 RKWRPISFKEISGQQHVVKSISNCLSKGKLHHSYLFSGSHGTGKTTIARIFSKGMSCKLG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C ++ + D + + + K ++ ++ I L Sbjct: 68 VTDQPCNKC--ENCI----EINHGSFVDLVEIDAASQSK---------IEHMKEILDNLQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V ++R + NALLK LEEPP+ + F+L + + STI SRCL Sbjct: 113 YLPTKGKFKIFLIDEVHMLSRYSFNALLKKLEEPPRHIKFLLATTNPEKLPSTIVSRCLH 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKI 235 K ++LSE + K LE++ K+ S R + + GS+ A+ I + KI Sbjct: 173 FKLDALSEKEISKRLEEVFSYEKVDHDMSSRKLIAKLSGGSLRDALNISEQVISIGKGKI 232 Query: 236 ISSYI-DLIHIPRQEYALQKMQQIA 259 + I D++ IP ++Y Q M+ I Sbjct: 233 STDLISDIVGIPNEDYPFQIMRSIV 257 >gi|167629255|ref|YP_001679754.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum Ice1] gi|167591995|gb|ABZ83743.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum Ice1] Length = 606 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 125/292 (42%), Gaps = 47/292 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P Q L G E + + L R+ HA LF G +G GK T +GH Sbjct: 8 REWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAKALNCSGH 67 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PVR CN C + + + A HD L + + N VDEIR Sbjct: 68 ---------GPVRPCND--CL-NCRAINTGASHDVLEIDAASN---------RGVDEIRE 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + G ++V +ID V + A NALLK+LEEPP V+F+L + I +TI Sbjct: 107 LREQVKYAPQEGNYKVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATI 166 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL----H 229 SRC F L N + LE++ +I F+ A G + A+ IL Sbjct: 167 LSRCQRFDFRRLGVNEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVS 226 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELL-SQDQKIAFDFLIEFILK 280 Y ++I S + I + +ADE+L Q +A D L + +++ Sbjct: 227 YAGNEIDSGDVTAI-----------LGAVADEILYDMTQGLAEDRLSDVLMQ 267 >gi|153871226|ref|ZP_02000452.1| DNA polymerase III, delta prime subunit [Beggiatoa sp. PS] gi|152072308|gb|EDN69548.1| DNA polymerase III, delta prime subunit [Beggiatoa sp. PS] Length = 334 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 H+ + + + R+ HALL G QG+GKA R A ++L + P C Sbjct: 8 HDALWQQIQSRVMQNRLPHALLLSGPQGMGKALFAQRLAENLLCEQPQADGQTCGHC--K 65 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 PC + H L+ + P + GK I+V++IR + F +LTA+ ++I Sbjct: 66 PCHLLLANT-----HPDLF---KVEPVEAGK---QISVNQIRELIQFSTLTASYNRHQII 114 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++P + MNRNAAN+LLK LEEP + +L+SH +L+TIRSRC I F+ Sbjct: 115 IVNPAEAMNRNAANSLLKLLEEPSSDTVIMLVSHQYQALLATIRSRCQRIDFS 167 >gi|305665794|ref|YP_003862081.1| putative DNA polymerase III subunit delta [Maribacter sp. HTCC2170] gi|88710560|gb|EAR02792.1| putative DNA polymerase III, delta subunit [Maribacter sp. HTCC2170] Length = 389 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 123/258 (47%), Gaps = 42/258 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G I+ L+Q +GR+ HA LF G +G G ++ YA +++ QN + S + Sbjct: 7 ILGLSHIKNHLAQSADAGRIPHAQLFVGPEGSGALSMAIAYAQYIICANQNAENSSVDNQ 66 Query: 71 MCN--------PD-----PCSPFVKQMASHALHDF-------------------LYLSYS 98 CN PD P S K + SHA+ + Y Sbjct: 67 ACNIKCNTLSHPDMHFAFPVSNSDK-VKSHAVSNHYMEEWRQFIMEQPYGNLFDWYRLIG 125 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K G+ I VDE I LSL + G ++V++I + MN AN LLK +EEPP Sbjct: 126 IEKKQGQ----IGVDEAHAIVKKLSLKSYEGGYKVMLIWMAEKMNVATANKLLKLIEEPP 181 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 +K +F+L++ I+ TI+SRC + F L+E + KALE +M ++ R + A Sbjct: 182 EKTVFLLVAQNEEQIIQTIKSRCQILHFPPLAEEFMAKALEDKGLMREEALR--LAHEAN 239 Query: 219 GSVARAIKILHYDCDKII 236 G+ +A+ +++ D + ++ Sbjct: 240 GNFNKALDLMNNDSEDLV 257 >gi|153853636|ref|ZP_01995016.1| hypothetical protein DORLON_01007 [Dorea longicatena DSM 13814] gi|149753791|gb|EDM63722.1| hypothetical protein DORLON_01007 [Dorea longicatena DSM 13814] Length = 329 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 22/222 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+DI K++S + R+ HA + GE+G GK L +A +L + Sbjct: 7 VVGHKDILKYISSAVENNRVSHAYILNGERGSGKKMLANLFAMTLL---------CETGD 57 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 +PC KQ S D + +++ P + I+VD+IR ++ + + G Sbjct: 58 NEPCGKCHSCKQAESGNHPDIIRVTHE-KPNS------ISVDDIRTQVNNTVDIKPYQGP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +I D M A NA+LK++EEPP +F+L++ + T+L TI SRC+ +K ++ Sbjct: 111 YKVYIIPQADMMTPQAQNAILKTIEEPPSYAVFLLLTENAETLLPTINSRCVMLKLRNIK 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + + K L E L+I D K D A G++ RAI + + D Sbjct: 171 DTLIKKYLMENLEI--PDYKADMCTAFAQGNMGRAIMLANSD 210 >gi|307544594|ref|YP_003897073.1| DNA polymerase III subunit delta' [Halomonas elongata DSM 2581] gi|307216618|emb|CBV41888.1| DNA polymerase III subunit delta' [Halomonas elongata DSM 2581] Length = 329 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 17/164 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASH 87 +GR+ HALLF G +GIGK +L L +F+ C QM + Sbjct: 24 AGRLPHALLFAGPKGIGKQSLAEALIARTLCAAPGEFACGQCHAC----------QMLAS 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L ++P+ GK I + +R + F+S TA G +RVI+I P + MN A+ Sbjct: 74 GYHPDLM---RVSPEEGK--RQIRIGPVRDVNAFVSQTAQQGGYRVIVIAPAEAMNVAAS 128 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 NALLKSLEEP K LF+L+S +L TIRSRC + E Sbjct: 129 NALLKSLEEPGGKTLFVLLSDIPSHLLPTIRSRCQQWSLATADE 172 >gi|188584680|ref|YP_001916225.1| DNA-directed DNA polymerase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349367|gb|ACB83637.1| DNA-directed DNA polymerase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 320 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 20/234 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRM 71 + G E I K L + SG HA +F G +G GK +L +A +L ++ D + P + Sbjct: 17 KFIGQEKIVKNLLRQLTSGNTGHAYMFVGPEGQGKGSLARIFAAGLLCESVDENSGPCGI 76 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C CS K ++H L G I ++E+R+++ +++ Sbjct: 77 CYS--CSKLKK-----SIHPDLV-------TIGSESKSIKIEEVRKVKQYINYRPTDSKK 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I+ + M R AN++LK LEEPP+ V+F+L + +L T+ SRC +F L+E Sbjct: 123 KIYLIESAENMTREGANSILKMLEEPPEYVVFLLTVNELERMLPTVISRCQIHQFLPLTE 182 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCDKIISSYID 241 LYKAL + + + + G + R + IL +YD K S+++ Sbjct: 183 EQLYKALSN-RTHASQEQLELAVSLSGGMIGRGLAILQDESYYDMIKKAHSFVE 235 >gi|194364656|ref|YP_002027266.1| DNA polymerase III subunit delta' [Stenotrophomonas maltophilia R551-3] gi|194347460|gb|ACF50583.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 12/156 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH- 90 R+ H LL G G+GK + A HVL D + A +Q+ + H Sbjct: 23 RLGHGLLICGPAGLGKREVALALADHVLARGDAAHAT-----------RTRQLIAAGTHP 71 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D +S+ N K RT I ++++R I L+LT G +V+++DP D +NR+AANAL Sbjct: 72 DLQLVSFIPNKSGDKLRTEIVIEQVREITNKLALTPQYGVAQVVIVDPADAINRSAANAL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LK+LEEP LIS + TIRSRC ++F Sbjct: 132 LKTLEEPQPGRYLWLISSDPARLPQTIRSRCQRLEF 167 >gi|258513465|ref|YP_003189687.1| DNA polymerase III, delta prime subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777170|gb|ACV61064.1| DNA polymerase III, delta prime subunit [Desulfotomaculum acetoxidans DSM 771] Length = 358 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 15/228 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+F ++ GH+ + + L Q +GR+ HA LF G+ G+GK T + +L D Sbjct: 22 RSFSMHMFSQIIGHKSLIRGLEQAVATGRVAHAYLFSGQHGVGKKTTALALSASLL--CD 79 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 F+++ C V + H L++ ++P I +++IR ++ Sbjct: 80 FNRSGDACGKCTSCRQLV-----NGNHPDLHI---ISPDGAS----IKIEQIRDLQQKAR 127 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++ +ID +GM R AAN LK LEEPP++ +FILIS +L T+ SRC Sbjct: 128 YKSYQNKHQIFIIDQAEGMTREAANCFLKILEEPPEQTVFILISAEPELLLPTVISRCQP 187 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + F L + L QL + + K A GS+ RA+ + D Sbjct: 188 MSFKDLGLEEISSLLIQLSGVNQE-KAGLAAQMARGSIGRALSYFNDD 234 >gi|285017428|ref|YP_003375139.1| DNA polymerase III, delta prime subunit protein [Xanthomonas albilineans GPE PC73] gi|283472646|emb|CBA15151.1| probable dna polymerase III, delta prime subunit protein [Xanthomonas albilineans] Length = 320 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 12/159 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR+ H LL G +G+GK + + A HVL + + + Q+ + Sbjct: 23 AGRLGHGLLICGPEGLGKRAVALKLAAHVLGQGEPA-----------ANQRSAQLIAAGT 71 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + +TG K RT I ++++R I L+LT G +V+++DP D +NR A N Sbjct: 72 HPDLHLISFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVVVDPADAINRAACN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + +T+RSRC ++F Sbjct: 132 ALLKTLEEPQPGRYLWLISAQPARLPATVRSRCQRLEFK 170 >gi|229592101|ref|YP_002874220.1| DNA polymerase III subunit delta' [Pseudomonas fluorescens SBW25] gi|229363967|emb|CAY51497.1| DNA polymerase III, delta' subunit [Pseudomonas fluorescens SBW25] Length = 329 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 103/205 (50%), Gaps = 24/205 (11%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L + PV + C S + + S Sbjct: 16 AGRAQHAHAYLLHGPVGIGKRDLAERLMASLL-----CQRPVNLEACGECKSCLLLKAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++I+PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KAIKVDQVRDLVSFVVQTAQMGGRKVVLIEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS----IKFNSLSENNLYKALEQLK 202 ANALLKSLEEP + +L+SH S +L TIRSRC+ + ++S L KAL Sbjct: 123 ANALLKSLEEPSGDTVLLLVSHQSSRLLPTIRSRCVQQACPLPSEAMSLEWLGKALPDCT 182 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKI 227 D + + + +AA GS A+K+ Sbjct: 183 E---DERVELLTLAA-GSPLAAVKL 203 >gi|11991875|gb|AAG42375.1|AF294440_7 DNA polymerase holoenzyme subunit [Xanthomonas albilineans] Length = 169 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 12/158 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR+ H LL G +G+GK + + A HVL + + + Q+ + Sbjct: 23 AGRLGHGLLICGPEGLGKRAVALKLAAHVLGQGEPA-----------ANQRSAQLIAAGT 71 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + +TG K RT I ++++R I L+LT G +V+++DP D +NR A N Sbjct: 72 HPDLHLISFVPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVVVDPADAINRAACN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ALLK+LEEP LIS + +T+RSRC ++F Sbjct: 132 ALLKTLEEPQPGRYLWLISAQPARLPATVRSRCQRLEF 169 >gi|220917743|ref|YP_002493047.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219955597|gb|ACL65981.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 363 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 20/225 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L E L G +HHA LF G +G GKA A N + +A Sbjct: 6 LIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAAVLLAQAA--NCEGGQAGPGGLR 63 Query: 74 PDPCS---PFVKQMASHALH-DFLYLSYSLN-PKTGKWRTV--------ITVDEIRR-IR 119 DPC P K LH D + L+ K G+W I VD++R + Sbjct: 64 EDPCGACGPCRK--IERGLHPDVVVLAAERTMAKAGRWEPKGGRAPSKDIVVDQVRDLVD 121 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + L++ G R ++IDP D MN A NALLK+LEEPP+ +L++ + +L TIRS Sbjct: 122 HRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDALLPTIRS 181 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 RCL + F L + L++ I +++ + GS+ RA Sbjct: 182 RCLRVSFRPLPAAAIAARLQEEGIPAEEAR--VAAALSGGSLGRA 224 >gi|326335396|ref|ZP_08201584.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692461|gb|EGD34412.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 374 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 125/277 (45%), Gaps = 36/277 (12%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR---MCNPD-- 75 +K+L + + R+ HA LF GE+G+G YA +L ++ + +PD Sbjct: 13 KKYLKETIYTDRIAHAQLFIGEEGVGTLPTAIAYATEILTKTGNDNTKIKCEHLTHPDLH 72 Query: 76 --------------PCSP--------FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P S F+ + L D+ Y + K GK I VD Sbjct: 73 FAYPTATTTKIKDHPYSTLFLEEWRQFINKNPYGTLFDW-YQFIGIANKQGK----IGVD 127 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 + + I LSL + G +++++I + MN + +N LLK LEEPP + +FIL+ + Sbjct: 128 DAKEITSNLSLKSFEGGYKIMIIWMAELMNTDCSNKLLKLLEEPPAQTIFILVVENESLL 187 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L TI SRC +F L + + AL + I DS+ + I A G+ RA+ L+ D D Sbjct: 188 LDTILSRCQITRFTKLGDQIITNALLEKGIT--DSEAQKIAIRAQGNFRRALSFLNKDSD 245 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 + + + R Y+ + + I +L+ ++IA Sbjct: 246 NLFEEW--FVRWVRMAYSAKGNKGILPSMLAWSEEIA 280 >gi|269836690|ref|YP_003318918.1| DNA polymerase III, delta prime subunit [Sphaerobacter thermophilus DSM 20745] gi|269785953|gb|ACZ38096.1| DNA polymerase III, delta prime subunit [Sphaerobacter thermophilus DSM 20745] Length = 346 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 14/201 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + L++ +G++ HA LF G +GIG+ TL +A +L + P C+ Sbjct: 10 IVGHTVAVEMLARAARTGQVAHAYLFSGPEGIGRFTLARIFAQALLCEAPADERPCGRCS 69 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKT-----GKWRTVITVDEIRRIRYFLSLTAN 127 Q +H D +S T GK T I+++ +R +R +SL Sbjct: 70 -------ACQRVERGVHPDVSVISRETQAATEERGDGK-HTRISIETVRNLRASISLRPM 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G WRV +I D ++R+A +ALLK+LEEPP V+ ILI+ + + TIRSRC + Sbjct: 122 EGRWRVAIIAESDLLSRDAFDALLKTLEEPPPFVVLILIATEAEALPETIRSRCQPVPLE 181 Query: 188 SLSENNLYKALEQLKIMGWDS 208 LS + + L + I D+ Sbjct: 182 PLSRSAVAAELTRRGIPPEDA 202 >gi|313668751|ref|YP_004049035.1| DNA polymerase III, delta' subunit [Neisseria lactamica ST-640] gi|313006213|emb|CBN87675.1| putative DNA polymerase III, delta' subunit [Neisseria lactamica 020-06] Length = 325 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 18/157 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R +A LF G++GIGK R+A VL +NP R C F +Q SH Sbjct: 19 RRPNAWLFAGKKGIGKTEFA-RFAAQVLLCENPSPDH---RACGACASCHFFEQ-GSHP- 72 Query: 90 HDFLYLSYSLNP-----KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 DF Y + P + G+ I +D +R+I + LT+ G RV++I P + MN Sbjct: 73 -DF----YEITPLSDESENGRKLLQIKIDAVRKIIDNVYLTSVRGGLRVVLIHPAESMNV 127 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 128 QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|189485351|ref|YP_001956292.1| DNA polymerase III delta' subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287310|dbj|BAG13831.1| DNA polymerase III delta' subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 319 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 4/186 (2%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-PDFSKAPVR 70 + + G + I+K +S SG++ HA +F G+ G+GK +A + N DF K Sbjct: 3 ESILGQKKIKKIISNQVKSGKIAHAYIFVGQDGVGKRLTAVEFAKILNCNVDDFIKTDAG 62 Query: 71 MCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 C +++ LH DF + K RT + ++ IR ++ ++ + Sbjct: 63 TCGKCISCKKIEKNIHPDLHFIDFARQAELEEECLEKQRT-LKIETIRYMQKEVATKIHE 121 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G W++ +I+P + MN AAN+LLK+LEEPP+ + ILI+ TI TI SR ++ F Sbjct: 122 GKWKIFIIEPAERMNAAAANSLLKTLEEPPENTIIILIAKHKETIPQTILSRVQTLFFQP 181 Query: 189 LSENNL 194 L +N + Sbjct: 182 LGQNEI 187 >gi|288819118|ref|YP_003433466.1| DNA polymerase III delta prime subunit [Hydrogenobacter thermophilus TK-6] gi|288788518|dbj|BAI70265.1| DNA polymerase III delta prime subunit [Hydrogenobacter thermophilus TK-6] gi|308752702|gb|ADO46185.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 31/201 (15%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----------------Q 60 H +K L Y GR+ +LLF G++G+GK T+ F +A +L Sbjct: 2 HHKAKKLLESMYKLGRVPSSLLFFGKEGVGKKTVAFDFAKALLCMKRTFPACNDCPSCFH 61 Query: 61 NPDFSKAPVRMCN--PDPCSP---FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 +FSK PV D + F+ H DF+YL P+ + I +D+I Sbjct: 62 MNEFSKKPVEELRVYSDTSTGRKVFLYLQGDHP--DFIYL----QPEKDE----IKIDQI 111 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + F++L +V+++ P + MN + NALLK+LEEPP+ FIL+ + IL Sbjct: 112 RGVIDFVNLRPALSPKKVVLVWPAEAMNPYSQNALLKTLEEPPEDTHFILVCNMLDRILP 171 Query: 176 TIRSRCLSIKFNSLSENNLYK 196 TIRSR +++F LSE ++ K Sbjct: 172 TIRSRSYTVEFEELSEEDIKK 192 >gi|226943615|ref|YP_002798688.1| DNA polymerase III subunit delta' [Azotobacter vinelandii DJ] gi|226718542|gb|ACO77713.1| DNA polymerase III delta prime subunit [Azotobacter vinelandii DJ] Length = 328 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 16/153 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPC-SPFVKQMASHAL 89 R HA L G GIGK L R A +L Q+P A + C C S + Q SH Sbjct: 20 RHAHAYLLHGPAGIGKRALAERLAARLLCQSP----AGLEACGQ--CKSCRLLQAGSHPD 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + L P+ I VD++R + F++ TA G +V++++P + MN NAANA Sbjct: 74 H------FLLEPEEAD--KAIRVDQVRDLVEFVTQTAQLGGRKVVLLEPAEAMNSNAANA 125 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LLKSLEEP + + +LISH +L TIRSRC+ Sbjct: 126 LLKSLEEPSGESVLLLISHQPSRLLPTIRSRCV 158 >gi|254525307|ref|ZP_05137362.1| DNA polymerase III delta subunit [Stenotrophomonas sp. SKA14] gi|219722898|gb|EED41423.1| DNA polymerase III delta subunit [Stenotrophomonas sp. SKA14] Length = 318 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 12/156 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH- 90 R+ H LL G G+GK + A HVL D + A +Q+ + H Sbjct: 23 RLGHGLLICGPAGLGKHEVALALADHVLARGDAAHAT-----------RTRQLIAAGTHP 71 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D +S+ N K RT I ++++R I L+LT G +V+++DP D +NR+AANAL Sbjct: 72 DLQLVSFIPNKSGDKLRTEIVIEQVREITNKLALTPQYGVAQVVIVDPADAINRSAANAL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LK+LEEP LIS + T+RSRC ++F Sbjct: 132 LKTLEEPQPGRYLWLISSDPARLPQTVRSRCQRLEF 167 >gi|86131109|ref|ZP_01049708.1| DNA polymerase III, delta' subunit [Dokdonia donghaensis MED134] gi|85818520|gb|EAQ39680.1| DNA polymerase III, delta' subunit [Dokdonia donghaensis MED134] Length = 399 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 116/252 (46%), Gaps = 30/252 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN----------- 61 + G + I+ L+ +GR+ HA LF G G G + YA ++L N Sbjct: 21 NVIGQDFIKNHLTTSVDAGRIAHAQLFVGLAGTGVLPMAIAYAQYILCNNAQGENNSGAA 80 Query: 62 -----------PD----FSKAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKTG- 104 PD F A P S F+KQ S + + + G Sbjct: 81 DCNLKFENLSHPDLHFAFPVATTPEVKSHPVSSHFIKQWRSFIKENPYGDLFEWHQHLGI 140 Query: 105 -KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 K + I V+E I L+L A G ++V++I VD MN A+N LLK LEEPP + LF Sbjct: 141 EKKQGQIGVNEAADINKSLALKAYEGGYKVMIIWSVDKMNTAASNKLLKLLEEPPAQTLF 200 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 ILI+ +I+ TI+SRC + F LSE + +AL K +++ + + A G + Sbjct: 201 ILIAENEDSIIDTIKSRCQVLTFPKLSEPQIAQAL-ITKHNTPEAEANKIAHQAQGDYQQ 259 Query: 224 AIKILHYDCDKI 235 A+ +LH+D D I Sbjct: 260 ALHLLHHDGDDI 271 >gi|326202929|ref|ZP_08192796.1| DNA polymerase III delta [Clostridium papyrosolvens DSM 2782] gi|325987006|gb|EGD47835.1| DNA polymerase III delta [Clostridium papyrosolvens DSM 2782] Length = 322 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 16/186 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ I L + HA +FEG G+GK ++A ++ + + P +C Sbjct: 1 MLGHQRILSALRAAVQKDNVSHAYIFEGPDGVGKRDTALKFASMLMCGEE--QFPCGVCK 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + K+ ++ H+ + S I+V+EIR I L + ++V Sbjct: 59 S--CQLY-KEASNPDFHEIIQKDKS-----------ISVEEIRNILKGLVIRPLYSKYKV 104 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I+I+ D M A NALLKSLEEPP ++FIL +S + TIRSRC I FN LS + Sbjct: 105 IIINDADAMTIQAQNALLKSLEEPPPYIVFILTVQSSAAVAQTIRSRCQRILFNRLSHED 164 Query: 194 LYKALE 199 + + LE Sbjct: 165 IMEILE 170 >gi|296313843|ref|ZP_06863784.1| DNA polymerase III, delta' subunit [Neisseria polysaccharea ATCC 43768] gi|296839574|gb|EFH23512.1| DNA polymerase III, delta' subunit [Neisseria polysaccharea ATCC 43768] Length = 325 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 8/152 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R +A LF G++G GK A +L +NP P +C C F + H Sbjct: 19 RRPNAWLFIGKKGTGKTAFARFVAQKLLCENPVPGGGPCGVCAS--CHLF--EQGGHP-- 72 Query: 91 DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 DF ++ S P+ G+ I +D IR+I + LT+ G RV++I P + MN AAN+ Sbjct: 73 DFYEITPLSDEPENGRKLLQIKIDAIRKIIDNVYLTSVRGGLRVVLIHPAESMNVQAANS 132 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 133 LLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|297621642|ref|YP_003709779.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila WSU 86-1044] gi|297376943|gb|ADI38773.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila WSU 86-1044] Length = 452 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 15/218 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + I L RM HA LF G +G GK TL +A + Sbjct: 6 VLARKYRPQTFREVLGQDAIVATLKNGIKKRRMAHAYLFSGSRGTGKTTLARLFAKAL-- 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +AP C P K++A+ + D L + + N +D+IR+I Sbjct: 64 ---NCQAPSNDCEPCNACSSCKEIAAGSSLDVLEVDGASN---------RGIDDIRQINE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +G +++ +ID V + + A NALLK+LEEPP+KV F + +L TI SR Sbjct: 112 TVGYSTASGRYKIYIIDEVHMLTKEAFNALLKTLEEPPEKVKFFFATTEPHKVLPTILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAA 217 C N + ++++ L+++ + G+ + D +++ A Sbjct: 172 CQRFNLNRIPQDSIIGKLKRMTEEQGFQADEDALRLVA 209 >gi|237738484|ref|ZP_04568965.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] gi|229420364|gb|EEO35411.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] Length = 483 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 45/316 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + + G ++I K + +G+ HA LF G +G+GK TL A V L+N Sbjct: 7 RKYRPKNFEEVAGQKEIVKTIKTSLRNGKTSHAYLFTGPRGVGKTTLARLIAKGVNCLEN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + C + + D + + + N +DEIR+++ Sbjct: 67 G-ITDEPCNRC--ENCLA----INNGTFLDMVEIDAASNR---------GIDEIRQLKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SRC Sbjct: 111 INYQPVKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRD-------FVKIAAYGSVARAIKILHYDCDK 234 F +LS N++ EQL+ +G + D + ++ GSV A+ IL Sbjct: 171 QRYDFKTLSLNDMK---EQLRFIGKNEGVDISDDVLELIYESSGGSVRDAVSILER---I 224 Query: 235 IISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILK 280 +++ + I + + E L +KM++ E+ ++ L IE K Sbjct: 225 MVTCLGEEITLEKSEEVLGVTSAKKMEEFLMEIKEKNYTKLVKTLDSFWNDSVEIELFFK 284 Query: 281 EICKSAKAAALSGQLE 296 + K K G+LE Sbjct: 285 DFAKYCKGLMAKGELE 300 >gi|90021297|ref|YP_527124.1| DNA polymerase III, delta prime subunit [Saccharophagus degradans 2-40] gi|89950897|gb|ABD80912.1| DNA polymerase III, delta prime subunit [Saccharophagus degradans 2-40] Length = 331 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 14/160 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALH 90 R+ HALL G++G+G TL + G +L +P+ C + Q SH Sbjct: 27 RVPHALLITGQEGLGSDTLA-KAMGQLL----LCLSPLEGIACGKCRACQLLQAGSHP-- 79 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D L+++ + GK I +D+IRR+ F+S TA G +V+++ P + MN N++NAL Sbjct: 80 DLLWIAPE---EAGK---QIKIDQIRRVTEFVSKTAQQGGKKVVVVTPTEAMNNNSSNAL 133 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 LKSLEEP + ILI+ IL TIRSRC I + S Sbjct: 134 LKSLEEPAGDTVLILITFQESQILPTIRSRCARIVLTTPS 173 >gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli 95/1000] gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli 95/1000] Length = 521 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 34/287 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P +C P Q+ + D + + + N RT+I + +R Sbjct: 67 VNGP--TDKPCGVC------PSCTQIENGTPLDVIEIDGASNRGIENIRTII--ENVR-- 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIR Sbjct: 115 -----ISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIR 169 Query: 179 SRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDF-VKIAAYGSVARAIKILHYDCDK 234 SRC F SL +L K L+ + + + +D + F + A GSV + IL +K Sbjct: 170 SRCQQYIFKSLGIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETIL----EK 225 Query: 235 IISSYIDLIHIPRQEY-------ALQKMQQIADELLSQDQKIAFDFL 274 +I+ D HI + ++ D ++S+D+K F F+ Sbjct: 226 MIAYTADKKHITSGDVIAVVGGNNFSFVKDFFDVMISKDKKNYFQFV 272 >gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] Length = 520 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 32/286 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P +C P Q+ + D + + + N ++ IR I Sbjct: 67 VNGP--TDKPCGVC------PSCTQIENGTPLDVIEIDGASNR---------GIENIRSI 109 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIR Sbjct: 110 IENVRISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIR 169 Query: 179 SRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDF-VKIAAYGSVARAIKILH----Y 230 SRC F SL +L K L+ + + + +D + F + A GSV + IL Y Sbjct: 170 SRCQQYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAY 229 Query: 231 DCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 DK I S+ ++ + + ++ +++ D ++S+++K F+F+ Sbjct: 230 TTDKKYITSADVNAV-VGGNNFSF--VKEFFDIIMSENKKSYFEFV 272 >gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] Length = 559 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 31/282 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L SGR+ A LF G +G GK + G A V + Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 67 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K +PC+ P + + D + + + N TG VD+IR ++ Sbjct: 68 QGKG-------EPCNTCPMCLSITEGSSMDVIEIDAASN--TG-------VDDIRELKEK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 112 VQYAPALANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F+ +S +++ + LE++ + G + + + +K+ +A GS +L +I + Sbjct: 172 QRFDFHRVSLSDMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQ----QIAT 227 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL 274 +Y I +P+ + AL ++++ +A+ +L +D K L Sbjct: 228 TYGTEISLPQVQAALGISGDERIKTLAENILKKDIKNGLQTL 269 >gi|325286246|ref|YP_004262036.1| putative DNA polymerase III subunit delta [Cellulophaga lytica DSM 7489] gi|324321700|gb|ADY29165.1| putative DNA polymerase III, delta subunit [Cellulophaga lytica DSM 7489] Length = 383 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 43/260 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDF-SKAPV 69 Q + G I+K L +GR+ HA LF G +G G + YA ++L +N + + + Sbjct: 4 QDILGLSHIKKHLCLSADAGRIPHAQLFVGNEGCGTLPMAIAYAQYLLCKNINGENSGGI 63 Query: 70 RMCN---------------PDPCSPFVKQMA--SHALHDF--------------LYLSYS 98 CN P S VK A +H + D+ Y Sbjct: 64 EACNLKCANLSHPDLHFAFPVTNSDKVKSHAVSNHYMQDWRQFVNEQPYGNLFDWYRLIG 123 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K G+ I VDE + I L+L + G ++V+++ D MN AAN LLK +EEPP Sbjct: 124 IEKKQGQ----IGVDEAQDIVKKLTLKSYEGGYKVMIMWMADKMNIAAANKLLKLIEEPP 179 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-- 216 +K +FILI+ I+ TIRSRC + F L+EN + +AL + G D + F KIA Sbjct: 180 EKTIFILIAEDEEQIIQTIRSRCQILHFPPLAENAITEALIK---KGLDQQTAF-KIAHE 235 Query: 217 AYGSVARAIKILHYDCDKII 236 A G+ +A+ +++ D + ++ Sbjct: 236 ANGNFNKALDLMNNDSEDLV 255 >gi|89095550|ref|ZP_01168453.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] gi|89080188|gb|EAR59457.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] Length = 295 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 16/166 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 K L++ + R+ HALL G QGIGKA +A +L Q P+ KA +C C Sbjct: 16 KHLAELHRQKRLPHALLIHGMQGIGKALFAKSFAQMLLCQQPESGKA-CGVCKS--C--- 69 Query: 81 VKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ + H L++ L P+ GK + VD++R + F+ TA G +RV++IDP Sbjct: 70 --ELNAAGSHPDLFI---LQPEEAGKQ---LKVDQVRALGEFIYSTAQQGGYRVVVIDPA 121 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 D MN +ANALLK LEEP L +L++ +L TI+SRC I+ Sbjct: 122 DSMNIASANALLKMLEEPGSDTLLLLVTSKMGQVLPTIKSRCQHIE 167 >gi|254427878|ref|ZP_05041585.1| DNA polymerase III, delta' subunit domain protein [Alcanivorax sp. DG881] gi|196194047|gb|EDX89006.1| DNA polymerase III, delta' subunit domain protein [Alcanivorax sp. DG881] Length = 335 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 14/166 (8%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H D L + GR+ HALL G +GIGK L A +L + P C Sbjct: 15 HGDAMAQLLDQHAQGRLPHALLLTGAKGIGKLRLAESLAQTLLCEKPSAGLPCGHCQG-- 72 Query: 77 CSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C Q+++ H D LS KT I +D++R++ F + TA +RV + Sbjct: 73 C-----QLSTAGTHPDLHRLSPEEKSKT------IKIDQVRKLVGFATRTAQYSGYRVAI 121 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I P + +NRNA NALLK+LEEP + L +L+S +L TIRSRC Sbjct: 122 IYPAEALNRNAQNALLKTLEEPGAQTLLLLVSDQPTLLLPTIRSRC 167 >gi|150024125|ref|YP_001294951.1| DNA polymerase III, delta prime subunit [Flavobacterium psychrophilum JIP02/86] gi|149770666|emb|CAL42130.1| Probable DNA polymerase III, delta prime subunit [Flavobacterium psychrophilum JIP02/86] Length = 382 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 37/219 (16%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ GHE I+ L Q +GR+ HA LF G +G G YA +VL N + Sbjct: 5 QIVGHEHIKNHLIQSATAGRIPHAQLFVGPEGAGVLQTAIAYAQYVLCN---NIGNENQG 61 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLN-----PKT----GKWRTV-------------- 109 + C+ + + LH F+Y + + + PK+ WR Sbjct: 62 GNESCNLKFEHFSHPDLH-FVYPTVTTDEVKTKPKSLDFITDWRKFLAQKPYGSIFDWYN 120 Query: 110 ----------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 I V++ + + LSL A G ++++++ D MN A+N LLK LEEP + Sbjct: 121 ILDVKNKQGEIRVEDAQEVLKSLSLKAYEGGYKIMIVWMADKMNIAASNKLLKLLEEPTE 180 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 K LFILI+ I+ TIRSRC + F++LSEN + +AL Sbjct: 181 KTLFILITENEEDIIQTIRSRCQVLHFSALSENAITEAL 219 >gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira hyodysenteriae WA1] gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira hyodysenteriae WA1] Length = 527 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 27/244 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P +C P Q+ + D + + + N RT+I + +R Sbjct: 67 VNGP--TDKPCGVC------PSCTQIENGTPLDVIEIDGASNRGIENIRTII--ENVR-- 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIR Sbjct: 115 -----ISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIR 169 Query: 179 SRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDF-VKIAAYGSVARAIKILH----Y 230 SRC F SL +L K L+ + + + +D + F + A GSV + IL Y Sbjct: 170 SRCQQYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAY 229 Query: 231 DCDK 234 DK Sbjct: 230 TTDK 233 >gi|222873808|gb|EEF10939.1| predicted protein [Populus trichocarpa] Length = 289 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 4/187 (2%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 MN NAANALLK+LEEPP + +FILI+H+ +L TIRSRC K + LS L K L+ L Sbjct: 1 MNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKLDPLSPGLLEKLLQSL 60 Query: 202 --KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIA 259 + + +R + A GS AI + + +I + +L+ R + + ++A Sbjct: 61 GASLPETEEERRLLIQRAQGSARDAILLTEFGGLEIEQAIENLLEQRR--FDVPAAYKLA 118 Query: 260 DELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 + +++++ FD +L + +A +A +G + +A++ A + L + + ++N Sbjct: 119 EAATGRERQVQFDLFNRAVLDRVANAASHSASAGDIAQAERFANFWEELAETIRQVEIFN 178 Query: 320 LDRRQMI 326 LDR+Q + Sbjct: 179 LDRKQHV 185 >gi|254496164|ref|ZP_05109061.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii LLAP12] gi|254354620|gb|EET13258.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii LLAP12] Length = 554 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 133/285 (46%), Gaps = 34/285 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSIARILAKSLNCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P CN A A+ ++ K R T D + ++Y Sbjct: 68 ISSEPCLQCN-----------ACMAIEQGRFIDLIEIDGASKTRVEDTRDLLDNVQY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRCL Sbjct: 114 -APASGRFKIYLIDEVHMLSQHSFNALLKTLEEPPAHVKFILATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKILH---YDCD 233 L+ + + + L+++ D + DF + AA GS+ A+ +L CD Sbjct: 173 FNLKHLAADVIS---QHLQLILNDEQLDFEVAALDILAQAARGSMRDALSLLDQAITSCD 229 Query: 234 -KIISSYIDLI-HIPRQEYALQKMQ----QIADELLSQDQKIAFD 272 K+ +S + LI +Q+YA+Q +Q Q A ELL+ Q+IA + Sbjct: 230 IKLHASDVKLILGYTQQDYAIQLLQALAAQNAPELLTISQQIAIE 274 >gi|225849732|ref|YP_002729966.1| DNA polymerase III, delta prime subunit [Persephonella marina EX-H1] gi|225645247|gb|ACO03433.1| DNA polymerase III, delta prime subunit [Persephonella marina EX-H1] Length = 309 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 29/285 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ GHE+ ++ + Y ++LLFEG+ IGK + + A L + C Sbjct: 2 KILGHEETKEIIRLYLDKKYSSYSLLFEGKDCIGKKLIALKTAKGFLCEKRYGFG----C 57 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNP---------KTGKWRTVITVDEIRRIRYFLS 123 + V+ S+ +Y LNP + GK I + +IR + FL Sbjct: 58 DSCESCRLVRNTISN-----IYDKTDLNPHPDIKIVSPEDGKE---IKIGQIRDVISFLK 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G +V++I+ + MNR ++NALLK+LEEPP+ L IL + +L TI SRC Sbjct: 110 LKTKEG--KVVIIEKAERMNRESSNALLKTLEEPPENTLIILTTSNQNALLPTIVSRCQK 167 Query: 184 IKFNSLSENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARAIKILHYD-CDKIISSYID 241 IKF LS+ + L LK+ G D SK + + GS+ + IL+ + K + Sbjct: 168 IKFRPLSKEEI---LSILKLKGVDESKAKILASLSEGSMCLPMMILNNENLFKYAKDLYN 224 Query: 242 LIHIPR-QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 L+ + + + +I D L + + I FD L + I K+ K Sbjct: 225 LLAVKNLHPEGIINLAEILDRLETNEIFIIFDILEKIIYKKSLKG 269 >gi|325129917|gb|EGC52718.1| DNA polymerase III, delta' subunit [Neisseria meningitidis OX99.30304] Length = 325 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 23/190 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL-----------LCETPSPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC + + S +AL L+ Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHG---EALAYLRD 183 Query: 204 MGWDSKRDFV 213 G +F+ Sbjct: 184 RGVAEPEEFL 193 >gi|332186051|ref|ZP_08387797.1| ATPase involved in DNA replication [Sphingomonas sp. S17] gi|332013866|gb|EGI55925.1| ATPase involved in DNA replication [Sphingomonas sp. S17] Length = 324 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNP-DPCSPFVKQMASHAL 89 ++HHA L G +G+GKA+ A +L P + P D + + + SH Sbjct: 22 KLHHAWLIAGPEGVGKASFARAAATRLLARASGQGGLPPGLAVPADHPTARLIEAGSHP- 80 Query: 90 HDFLYLSY----SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 DF L+ P R+ IT+ ++R ++ + G RV++ID +D + R Sbjct: 81 -DFRVLARLPKDVEKPDQDLARS-ITIAQVRTLQPMFATAPAMGPARVVLIDAIDDLERG 138 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 ANALLK+LEEPP +F+L+SHA +L TIRSRC ++F LS+ ++ L Q Sbjct: 139 GANALLKNLEEPPAGTVFLLVSHAPGRLLPTIRSRCRLLRFERLSDTDVAHVLRQQLPEA 198 Query: 206 WDSKRDFVKIAAYGSVARAIKILHYD 231 + + + A G+ RA++ D Sbjct: 199 DEGEIAALVAVAEGAPGRALRFAGLD 224 >gi|163754585|ref|ZP_02161707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Kordia algicida OT-1] gi|161325526|gb|EDP96853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Kordia algicida OT-1] Length = 386 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 124/262 (47%), Gaps = 46/262 (17%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVR 70 Q + G I+K L+ GR+ HA LF G +G G + YA +VL QN + A Sbjct: 4 QDILGLTHIKKHLTLSADRGRIPHAQLFVGPEGCGTLPMAIAYAQYVLCQNSEGENAGGN 63 Query: 71 -MCN--------PD----------------PCSP--------FVKQMASHALHDFLYLSY 97 CN PD P S FVK+ L D+ Y Sbjct: 64 DACNLKFSNLSHPDLHFAFPVAGNHKVKSHPVSKHFLEEWRQFVKEQPYGNLFDW-YKML 122 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 ++ K G+ I VDE I L+L + G ++V++I + MN AAN LLK +EEP Sbjct: 123 GIDNKQGQ----IGVDEALDIVKSLTLKSYEGGYKVMIIWMAERMNTAAANKLLKLIEEP 178 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIA 216 P K LF+LI+ I++TIRSRC + F L E + ++L + L + ++ + KIA Sbjct: 179 PNKTLFLLIAEDEEQIINTIRSRCQILHFPPLGEQAIKESLMKNLNV----AEAEATKIA 234 Query: 217 --AYGSVARAIKILHYDCDKII 236 A G+ +A+ ++H D + ++ Sbjct: 235 HQANGNYNKAVDLVHQDSEDLM 256 >gi|261400455|ref|ZP_05986580.1| DNA polymerase III, delta' subunit [Neisseria lactamica ATCC 23970] gi|269209908|gb|EEZ76363.1| DNA polymerase III, delta' subunit [Neisseria lactamica ATCC 23970] Length = 325 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 18/157 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R +A LF G++GIGK R+A L +NP R C F +Q SH Sbjct: 19 RRPNAWLFAGKKGIGKTEFA-RFAAQALLCENPSPDH---RACGACASCHFFEQ-GSHP- 72 Query: 90 HDFLYLSYSLNP-----KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 DF Y + P + G+ I +D +R+I + LT+ G RV++I P + MN Sbjct: 73 -DF----YEITPLSDESENGRKLLQIKIDAVRKIIDNVYLTSVRGGLRVVLIHPAESMNV 127 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 128 QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|121996817|ref|YP_001001604.1| DNA polymerase III subunit delta' [Halorhodospira halophila SL1] gi|121588222|gb|ABM60802.1| DNA polymerase III, delta prime subunit [Halorhodospira halophila SL1] Length = 351 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 28/212 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA--PVRMCNPDP 76 ++++ L+ + GR+HHALL G G+GK L A +L D P C Sbjct: 27 ELDRLLT-LHDQGRLHHALLLTGRTGLGKRLLAGVLARALLCQADEGGGARPCGQCRG-- 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C + H L +L+P + R I VD +R + FL L+A G RV +I Sbjct: 84 C-----HLTGGGSHPDLR---TLSPSSRGERGEIVVDSVRGLVDFLHLSAQRGGSRVAVI 135 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 P D +NR AAN+LLK+LEEPP V IL + + T+RSRC Sbjct: 136 VPCDRLNRAAANSLLKTLEEPPPGVFLILATGRPGRLPPTVRSRC--------------- 180 Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + L WD+ R ++ A G+ R K L Sbjct: 181 TVRGLTPPAWDAARRWLAERAGGAEGRVDKAL 212 >gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum ATCC 27405] gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum ATCC 27405] Length = 547 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + E + + L CSGR+ HA LF G +G GK T+ Sbjct: 8 RKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMA----------KI 57 Query: 64 FSKAPVRMCNP---DPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 FS+A V NP DPC+ + + + +L D + + + N +VD+IR + Sbjct: 58 FSRA-VNCLNPKDGDPCNQCEICQGILNGSLLDVIEIDAASNN---------SVDDIRVL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI Sbjct: 108 RDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 SRC F + +++ K +E + K G + +R+ K+ A G++ AI IL Sbjct: 168 SRCQRFDFRRIPVDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISIL 221 >gi|312962560|ref|ZP_07777050.1| DNA polymerase III delta prime subunit [Pseudomonas fluorescens WH6] gi|311283140|gb|EFQ61731.1| DNA polymerase III delta prime subunit [Pseudomonas fluorescens WH6] Length = 329 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 102/205 (49%), Gaps = 24/205 (11%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L + PV + C S + + S Sbjct: 16 AGRAQHAHAYLLHGPIGIGKRALAERLMASLL-----CQRPVNLHACGECKSCLLLKAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++I+PV+ MN NA Sbjct: 71 HPDN------YLLEPEEAD--KAIKVDQVRDLVSFVVQTAQMGGRKVVLIEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS----IKFNSLSENNLYKALEQLK 202 ANALLKSLEEP + +L+SH S +L TIRSRC+ + ++S L +AL + Sbjct: 123 ANALLKSLEEPSGDTVLLLVSHQSSRLLPTIRSRCVQQACPLPSEAMSLQWLGQALPECS 182 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKI 227 + +R + A GS A+K+ Sbjct: 183 ----EQERIELLTLAAGSPLAAVKL 203 >gi|253582122|ref|ZP_04859346.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] gi|251836471|gb|EES65008.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] Length = 484 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 30/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + + G ++I K L +G+ HA LF G +G+GK T+ A V L+N Sbjct: 7 RKYRPKNFEEIAGQKEIVKTLKASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVNCLEN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + C + + D + + + N +DEIR+++ Sbjct: 67 -GITDEPCNKC--ENCL----SINDGSFMDMIEIDAASNR---------GIDEIRQLKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SRC Sbjct: 111 INYQPSKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F +LS + + LE++ K G D + + + GS+ A IL +I+ Sbjct: 171 QRYDFKTLSPAEMKEKLEEISKNEGVSVPDDVLNLIYENSGGSMRDATSILER---LMIT 227 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + + E L +KM++ D ++ + K L EF Sbjct: 228 CLNEEITLEKCEKVLGVTPVKKMKEFLDNVMEKKYKELIKLLDEF 272 >gi|257885063|ref|ZP_05664716.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,501] gi|257820915|gb|EEV48049.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,501] Length = 312 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRIAHAYLFEGEKGTGKHEVGIWLAQHLFCTQMKDNLPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P+ I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPEG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEKQI 183 >gi|261207352|ref|ZP_05922039.1| DNA polymerase III delta prime subunit [Enterococcus faecium TC 6] gi|289566859|ref|ZP_06447268.1| DNA polymerase III delta prime subunit [Enterococcus faecium D344SRF] gi|294615741|ref|ZP_06695591.1| DNA polymerase III subunit delta' [Enterococcus faecium E1636] gi|260078412|gb|EEW66116.1| DNA polymerase III delta prime subunit [Enterococcus faecium TC 6] gi|289161347|gb|EFD09238.1| DNA polymerase III delta prime subunit [Enterococcus faecium D344SRF] gi|291591392|gb|EFF23051.1| DNA polymerase III subunit delta' [Enterococcus faecium E1636] Length = 312 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRIAHAYLFEGEKGTGKHEVGIWLAQHLFCTQMKDNLPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P+ I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPEG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEEQI 183 >gi|307243781|ref|ZP_07525913.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] gi|306492835|gb|EFM64856.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] Length = 312 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 38/251 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +R+ G ++ L + G + +A L G +G+GK + +A ++L VR+ Sbjct: 3 ERILGQASVKAKLGRALEMGNITNAYLLTGPEGVGKRMIAEDFAENLL--------GVRL 54 Query: 72 CN-PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N PD VK K I +D+IR + +S+ G Sbjct: 55 ENSPDYKCIGVK----------------------KGENSIKIDQIRDMIGDMSIKP-YGN 91 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID D M A NALLK+LEEP + IL++ +L TIRSRCL IKF LS Sbjct: 92 YKIFVIDDADKMTVQAQNALLKTLEEPSAYGIIILVTRNDQALLDTIRSRCLEIKFAPLS 151 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI----ISSYIDLIHIP 246 ++ L + I D + I + GS +RA+ I K+ + SY+++I I Sbjct: 152 SRDIRTILSERGI--DDDQAQVASIFSRGSASRALDICESQDLKLMRQDLESYLEIIFID 209 Query: 247 RQEYALQKMQQ 257 + +Y L +M + Sbjct: 210 KNKYELARMGE 220 >gi|189425006|ref|YP_001952183.1| DNA polymerase III delta prime subunit [Geobacter lovleyi SZ] gi|189421265|gb|ACD95663.1| DNA polymerase III, delta prime subunit [Geobacter lovleyi SZ] Length = 331 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 18/222 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + + L + + R+ HA LFEG G G+ T L F K P+ D Sbjct: 8 GQDRVLDALKRSIAANRVAHAYLFEGPDGCGRRTTAL-----ALMQALFCKEPLD--GGD 60 Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C +++AS H L+L L+P K I++++IR ++ LSL + Sbjct: 61 ACGNCSSCRKLASGN-HPDLHL---LSPLPDKRD--ISIEQIRELQQQLSLRPFEAKRKA 114 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I+P + MN +ANALLK+LEEPP + +L+S + +LSTIRSRC ++F+ L + Sbjct: 115 CLIEPAERMNEKSANALLKTLEEPPGHAIIVLLSTQADLLLSTIRSRCQHLRFSPLDDGV 174 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 + L Q + M D R+ + A GS+ RA L + D + Sbjct: 175 VADLLIQ-QGMDPDKARELAPL-AEGSMERA-STLEEESDAV 213 >gi|319953047|ref|YP_004164314.1| DNA polymerase iii, delta subunit [Cellulophaga algicola DSM 14237] gi|319421707|gb|ADV48816.1| putative DNA polymerase III, delta subunit [Cellulophaga algicola DSM 14237] Length = 385 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 117/257 (45%), Gaps = 41/257 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL------QNPDFSKA 67 + G I+ L +GR+ HA LF G +G G + YA H+L N +A Sbjct: 6 ILGLSHIKNHLVSSAQAGRIPHAQLFVGSEGCGTLPMAIAYAQHILCESSEATNEQTKQA 65 Query: 68 PVRMCN----PD-----PCSP-------------------FVKQMASHALHDFLYLSYSL 99 CN PD P + FVK+ L D+ Y + Sbjct: 66 CHIKCNTLTHPDLHFAFPVANSDKVKSRAVSDNYIQDFRVFVKEQPYGNLFDW-YRLIDI 124 Query: 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 K G+ I VDE + I LSL + G +++ +I D +N +A+N LLK +EEPP Sbjct: 125 EKKQGQ----IGVDEAQEIVKKLSLKSYEGGYKICIIWMADKLNISASNKLLKLIEEPPD 180 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 K +FILI+ I+ TIRSRC + F LSE+ + L QL I + R + A G Sbjct: 181 KTVFILIAEDEEQIIQTIRSRCQVLHFPPLSEDAIANGLIQLGIAQDQALR--LANEANG 238 Query: 220 SVARAIKILHYDCDKII 236 + +A+ +++ D + ++ Sbjct: 239 NYNKALDLMNNDSEDLV 255 >gi|256004179|ref|ZP_05429163.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281419179|ref|ZP_06250196.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|255991927|gb|EEU02025.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281407328|gb|EFB37589.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|316941749|gb|ADU75783.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 1313] Length = 547 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + E + + L CSGR+ HA LF G +G GK T+ Sbjct: 8 RKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMA----------KI 57 Query: 64 FSKAPVRMCNP---DPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 FS+A V NP DPC+ + + + +L D + + + N +VD+IR + Sbjct: 58 FSRA-VNCLNPKDGDPCNQCEICQGILNGSLLDVIEIDAASNN---------SVDDIRVL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI Sbjct: 108 RDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 SRC F + +++ K +E + K G + +R+ K+ A G++ AI IL Sbjct: 168 SRCQRFDFRRIPVDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISIL 221 >gi|114775377|ref|ZP_01450945.1| DNA polymerase III subunit delta [Mariprofundus ferrooxydans PV-1] gi|114553488|gb|EAU55869.1| DNA polymerase III subunit delta [Mariprofundus ferrooxydans PV-1] Length = 324 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +N + GH+ +E ++ RMHHA L G +GIGK L R G ++ + Sbjct: 3 HNSPVLGHQRVELRFTEALKQQRMHHAWLLYGMKGIGKRMLAERLTGLLMCDSHNDCGEC 62 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C + +A+ + D Y + GK + ++++R++ FLSL+ + G Sbjct: 63 HGC---------RMLAAGSHPDV----YRVGLAEGK--RDVNIEQVRQMLGFLSLSGSEG 107 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 RV+++D + +N AANALLK LEEP + +++ + +TIRSRC+ + L Sbjct: 108 ERRVVILDDAERLNHQAANALLKGLEEPSAGSVLLMVCADLERLPATIRSRCMLQQCMPL 167 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKI 215 +E+++ + L+ +M D+K D + Sbjct: 168 AEHDVRRILDA-SLMEGDNKPDVATL 192 >gi|69246401|ref|ZP_00603923.1| DNA polymerase III delta prime subunit [Enterococcus faecium DO] gi|257879315|ref|ZP_05658968.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,230,933] gi|257881869|ref|ZP_05661522.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,502] gi|257890141|ref|ZP_05669794.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,410] gi|258615721|ref|ZP_05713491.1| DNA polymerase III subunit delta' [Enterococcus faecium DO] gi|260558757|ref|ZP_05830946.1| DNA polymerase III delta prime subunit [Enterococcus faecium C68] gi|293550620|ref|ZP_06673288.1| DNA polymerase III subunit delta' [Enterococcus faecium E1039] gi|293559583|ref|ZP_06676117.1| DNA polymerase III subunit delta' [Enterococcus faecium E1162] gi|293567578|ref|ZP_06678922.1| DNA polymerase III subunit delta' [Enterococcus faecium E1071] gi|294621758|ref|ZP_06700918.1| DNA polymerase III subunit delta' [Enterococcus faecium U0317] gi|314937923|ref|ZP_07845239.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133a04] gi|314941414|ref|ZP_07848307.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133C] gi|314948531|ref|ZP_07851911.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0082] gi|314951286|ref|ZP_07854340.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133A] gi|314992883|ref|ZP_07858284.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133B] gi|314998087|ref|ZP_07862975.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133a01] gi|68195273|gb|EAN09725.1| DNA polymerase III delta prime subunit [Enterococcus faecium DO] gi|257813543|gb|EEV42301.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,230,933] gi|257817527|gb|EEV44855.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,502] gi|257826501|gb|EEV53127.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,231,410] gi|260075216|gb|EEW63529.1| DNA polymerase III delta prime subunit [Enterococcus faecium C68] gi|291589679|gb|EFF21483.1| DNA polymerase III subunit delta' [Enterococcus faecium E1071] gi|291598645|gb|EFF29702.1| DNA polymerase III subunit delta' [Enterococcus faecium U0317] gi|291603241|gb|EFF33425.1| DNA polymerase III subunit delta' [Enterococcus faecium E1039] gi|291606459|gb|EFF35859.1| DNA polymerase III subunit delta' [Enterococcus faecium E1162] gi|313587929|gb|EFR66774.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133a01] gi|313592687|gb|EFR71532.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133B] gi|313596503|gb|EFR75348.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133A] gi|313599837|gb|EFR78680.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133C] gi|313642781|gb|EFS07361.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0133a04] gi|313645028|gb|EFS09608.1| DNA polymerase III, delta' subunit [Enterococcus faecium TX0082] Length = 312 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRIAHAYLFEGEKGTGKHEVGIWLAQHLFCTQMKDNLPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P+ I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPEG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEEQI 183 >gi|225848090|ref|YP_002728253.1| DNA polymerase III subunits gamma/tau [Sulfurihydrogenibium azorense Az-Fu1] gi|225644444|gb|ACN99494.1| DNA polymerase III, gamma/tau subunits [Sulfurihydrogenibium azorense Az-Fu1] Length = 306 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 130/278 (46%), Gaps = 33/278 (11%) Query: 13 RLFGH----EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 ++ GH E I+K+LS+ Y S +LL+EG+ IGK + F A L K Sbjct: 2 KVIGHQKEIELIKKYLSKNYDS----LSLLYEGKDCIGKKLIAFLTARGFL----CEKKQ 53 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK--------TGKWRTVITVDEIRRIRY 120 C V + S+ +Y +L P GK I +D+IR Sbjct: 54 GLGCGECHDCKLVNNLISN-----VYNKENLTPHPNIKFIPYEGKE---IKIDQIREAIS 105 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 FL+L ++ G +V++I+ + MN +ANALLK+LEEPP L IL + +L TI SR Sbjct: 106 FLTLKSDKG--KVLIIEKAENMNTESANALLKTLEEPPLNTLIILTTSNQNQLLPTIVSR 163 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-CDKIISSY 239 I+F LSE + L +LKI + KI+ GS+ I++ + + SY Sbjct: 164 LKKIRFRKLSEEEVRDIL-RLKISDEKKVENLSKISG-GSLCLPFSIINKENVYNLAHSY 221 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +LI + + L + I D+ S D + FD ++ F Sbjct: 222 YELIKTKKHQEGLFSITPIVDKFDSDDTNLFFDIILRF 259 >gi|304312954|ref|YP_003812552.1| ATPase involved in DNA replication (DNA polymerase III delta\' subunit) [gamma proteobacterium HdN1] gi|301798687|emb|CBL46919.1| ATPase involved in DNA replication (DNA polymerase III delta\' subunit) [gamma proteobacterium HdN1] Length = 354 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------QNPDFSKAPVRMCNP 74 K L+ + +G++ HALL +G+ G+GK +A +L Q+P +A + N Sbjct: 23 KHLTGAFRNGKLPHALLLQGQSGVGKELFARGFAQRLLCTAPRSTQSPQSEQACGQCRN- 81 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 C FV +H DF + L+P+ G I V+++R + F A G +RV+ Sbjct: 82 --CHLFVAD--THP--DF----FCLSPEEGS--KSIRVEQVRELIAFAGKKAQLGGYRVV 129 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ P D MN N+ANALLK LEEP + + +L++ +L+T+RSRC S+ F Sbjct: 130 ILKPADAMNVNSANALLKCLEEPGKDTVIMLLTDQPGRLLATVRSRCQSVVF 181 >gi|77919290|ref|YP_357105.1| DNA polymerase III subunits gamma/tau [Pelobacter carbinolicus DSM 2380] gi|77545373|gb|ABA88935.1| DNA polymerase III, delta prime subunit [Pelobacter carbinolicus DSM 2380] Length = 321 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 26/217 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ GH+ + L + S R+ HA LFEG +GIGK + + + C Sbjct: 4 RVLGHQRQKDLLEKAVSSKRLPHAYLFEGPEGIGKRLVAL------------ALTKILFC 51 Query: 73 -NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 N + C P ++ H D + L P + I +++IR ++ LS Sbjct: 52 ANGNSCGDCPACHKVDHHNHPDL----HQLGPDG----SSIKIEQIRALQKELSYRPLEA 103 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID + MN AANALLK+LEEP + L IL++ A +L TIRSRC + F+ + Sbjct: 104 PYKVSIIDGAEKMNPAAANALLKTLEEPRSQTLLILLTPAPDAVLPTIRSRCQRLPFSRI 163 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 L + L EQL I D++ + + GS +A+ Sbjct: 164 PRERLQEVLVEQLNI--EDAQAHILATLSEGSFKKAL 198 >gi|294617666|ref|ZP_06697293.1| DNA polymerase III subunit delta' [Enterococcus faecium E1679] gi|291596073|gb|EFF27339.1| DNA polymerase III subunit delta' [Enterococcus faecium E1679] Length = 312 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRIAHAYLFEGEKGTGKHEVGIWLAQHLFCTQMKDNLPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P+ I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPEG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEEQI 183 >gi|227550405|ref|ZP_03980454.1| possible DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257888434|ref|ZP_05668087.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,141,733] gi|257897191|ref|ZP_05676844.1| DNA polymerase III delta prime subunit [Enterococcus faecium Com12] gi|257899189|ref|ZP_05678842.1| DNA polymerase III delta prime subunit [Enterococcus faecium Com15] gi|293379608|ref|ZP_06625745.1| DNA polymerase III, delta' subunit [Enterococcus faecium PC4.1] gi|293572061|ref|ZP_06683072.1| DNA polymerase III subunit delta' [Enterococcus faecium E980] gi|227180464|gb|EEI61436.1| possible DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257824488|gb|EEV51420.1| DNA polymerase III delta prime subunit [Enterococcus faecium 1,141,733] gi|257833756|gb|EEV60177.1| DNA polymerase III delta prime subunit [Enterococcus faecium Com12] gi|257837101|gb|EEV62175.1| DNA polymerase III delta prime subunit [Enterococcus faecium Com15] gi|291607846|gb|EFF37157.1| DNA polymerase III subunit delta' [Enterococcus faecium E980] gi|292641757|gb|EFF59930.1| DNA polymerase III, delta' subunit [Enterococcus faecium PC4.1] Length = 312 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRLAHAYLFEGEKGTGKHEVGVWLAQHLFCTQMEDNQPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPDG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEEQI 183 >gi|308388956|gb|ADO31276.1| putative DNA polymerase III, delta' subunit [Neisseria meningitidis alpha710] gi|325136007|gb|EGC58617.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M0579] gi|325202434|gb|ADY97888.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M01-240149] gi|325206389|gb|ADZ01842.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M04-240196] gi|325207814|gb|ADZ03266.1| DNA polymerase III, delta' subunit [Neisseria meningitidis NZ-05/33] Length = 325 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 23/190 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC + + S +AL L+ Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHG---EALAYLRD 183 Query: 204 MGWDSKRDFV 213 G +F+ Sbjct: 184 RGVAEPEEFL 193 >gi|329119418|ref|ZP_08248103.1| DNA-directed DNA polymerase III subunit delta' [Neisseria bacilliformis ATCC BAA-1200] gi|327464351|gb|EGF10651.1| DNA-directed DNA polymerase III subunit delta' [Neisseria bacilliformis ATCC BAA-1200] Length = 325 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA+LF G++G GK A +L +N P +C P A ++ Sbjct: 19 RLPHAMLFAGKRGTGKTAFARHLAQSLLCENAAADGEPCGVC------PSCHLFAQNSHP 72 Query: 91 DFLYLSYSLNPKTGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 DF Y L P+T + T I +D +R + + LTA G RV ++ P + MN Sbjct: 73 DF----YELAPETPEGETAARRLPQIKIDAVRELIEHIRLTAVRGGRRVALVHPAEAMNA 128 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN LLK LEEPP V+F+L+SH +L T++SRC Sbjct: 129 QAANGLLKILEEPPTDVVFLLVSHERDRLLPTVKSRC 165 >gi|257893469|ref|ZP_05673122.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408] gi|257829848|gb|EEV56455.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408] Length = 239 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR+ HA LFEGE+G GK +G A H+ P CN C K+ Sbjct: 18 LQRSFEHGRIAHAYLFEGEKGTGKHEVGIWLAQHLFCTQMKDNLPCGKCNN--CQRIEKK 75 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 L + P+ I VD+IRR++ S + +V +I + MN Sbjct: 76 EHPDVL--------VIEPEG----QTIKVDQIRRLQTEFSRSGYESRKKVFLIKEAEKMN 123 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +AAN+LLK LEEPP L +L + A IL TI+SRC + F LS+ L L++ +I Sbjct: 124 SSAANSLLKFLEEPPGDFLAVLETDAVGRILPTIQSRCQVLHFQELSKEALIHRLQEEQI 183 >gi|88801972|ref|ZP_01117500.1| putative DNA polymerase III, delta subunit [Polaribacter irgensii 23-P] gi|88782630|gb|EAR13807.1| putative DNA polymerase III, delta subunit [Polaribacter irgensii 23-P] Length = 380 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 123/258 (47%), Gaps = 38/258 (14%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----QNPDF 64 ++NQ + G E I+ L +GR+ HA LF G++G G + YA +L +NP+ Sbjct: 2 LFNQ-IIGQEHIKNHLQVSAENGRIPHAQLFVGKEGSGTLPMAIAYAQFLLCNSSENPE- 59 Query: 65 SKAPVRMCN-----------PDPCSPFVKQMASHALHDFLYLSY----SLNPKTG--KW- 106 A CN P + VK+ HA+ + ++ + +P G W Sbjct: 60 --ACAVKCNKLQHPDLHFAFPVTTNDVVKK---HAVSNLFLENWRNFIASDPYGGLFNWL 114 Query: 107 --------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + I VDE + L L + G ++V++I + MN AAN LLK +EEPP Sbjct: 115 QFIGVENKQGNIGVDEAEAVVKKLQLKSFEGGFKVMIIWMAEKMNIAAANKLLKLIEEPP 174 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 K +FILI+ I+STI+SRC ++ F LSEN++ AL + + + AA Sbjct: 175 NKTVFILITENEEQIISTIKSRCQALHFPVLSENDISSALMEREKCSLPEASKIAQQAA- 233 Query: 219 GSVARAIKILHYDCDKII 236 G+ A+ +L D + ++ Sbjct: 234 GNYNNALHLLRNDGNDLV 251 >gi|319410137|emb|CBY90473.1| DNA polymerase III delta' subunit [Neisseria meningitidis WUE 2594] Length = 325 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 10/162 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASHAL 89 R +A LF G++ GK T R+A L + P C P + S + SH Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL----LCETPAPGCKPCGECMSCHLFGQGSHP- 72 Query: 90 HDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN AAN Sbjct: 73 -DFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAAN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +LLK LEEPP +V+F+L+SHA+ +L TI+SRC + + S Sbjct: 132 SLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCWKMVLPAPS 173 >gi|197122951|ref|YP_002134902.1| DNA polymerase III subunit delta' [Anaeromyxobacter sp. K] gi|196172800|gb|ACG73773.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter sp. K] Length = 363 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 98/228 (42%), Gaps = 26/228 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA------GHVLQNPDFSKA 67 L E L G +HHA LF G +G GKA A G + Sbjct: 6 LIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAAVLLAQAANCEGGQPGPGGLRED 65 Query: 68 PVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLN-PKTGKWRTV--------ITVDEIRR 117 P C P C LH D + L+ K G+W I VD++R Sbjct: 66 PCGACGP--CRKI-----ERGLHPDVVVLAAERTMAKAGRWEPKGGRAPSKDIVVDQVRD 118 Query: 118 -IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + L++ G R ++IDP D MN A NALLK+LEEPP+ +L++ + +L T Sbjct: 119 LVDHRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDALLPT 178 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 IRSRCL + F L + L++ I +++ + GS+ RA Sbjct: 179 IRSRCLRVGFRPLPVAAVAARLQEEGIPAEEAR--VAAALSGGSLGRA 224 >gi|261378794|ref|ZP_05983367.1| DNA polymerase III, delta' subunit [Neisseria cinerea ATCC 14685] gi|269144772|gb|EEZ71190.1| DNA polymerase III, delta' subunit [Neisseria cinerea ATCC 14685] Length = 325 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 8/152 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R +A LF G++G GK A +L +NP P +C S + + H Sbjct: 19 RRPNAWLFIGKKGTGKTAFARFVAQKLLCENPVPGGGPCGVC----ASCHLFEQGGHP-- 72 Query: 91 DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 DF ++ S P+ G+ I +D IR+I + LT+ G RV++I P + MN AAN+ Sbjct: 73 DFYEITPLSDEPENGRKLLQIKIDAIRKIIDNVYLTSVRGGLRVVLIHPAESMNVQAANS 132 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK LEEPP +V+F+L+SHA +L T++SRC Sbjct: 133 LLKVLEEPPPQVVFLLVSHAVDKVLPTVKSRC 164 >gi|163789253|ref|ZP_02183695.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Flavobacteriales bacterium ALC-1] gi|159875468|gb|EDP69530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Flavobacteriales bacterium ALC-1] Length = 386 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 102/220 (46%), Gaps = 39/220 (17%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN----------- 61 + G + I+ L+ GR+ HA LF G +G G + YA ++L N Sbjct: 5 EVLGQKHIKNHLTASVDKGRIAHAQLFVGPEGSGTLPMALAYAQYILCNNTNGENTGGND 64 Query: 62 -----------PDFSKA-PVRMCNPDPCSP-----------FVKQMASHALHDFLYLSYS 98 PD A PV + P V+Q L D+ Y Sbjct: 65 SCNLKFKNISHPDLHFAFPVTTSDKIKSKPVSNYYLEEWRQLVEQQPYGNLFDW-YKLLG 123 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 ++ K G+ I VDE I LSL + G ++V++I + MN +AN LLK +EEPP Sbjct: 124 VDNKQGQ----IGVDEALEIVKSLSLKSYEGGYKVMLIWMAEKMNTPSANKLLKLIEEPP 179 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +K +FILI+ I++TIRSRC ++ F L+E+ + KAL Sbjct: 180 EKTIFILIAEDEEQIINTIRSRCQTLHFPPLAEDTIAKAL 219 >gi|126662712|ref|ZP_01733711.1| putative DNA polymerase III, delta subunit [Flavobacteria bacterium BAL38] gi|126626091|gb|EAZ96780.1| putative DNA polymerase III, delta subunit [Flavobacteria bacterium BAL38] Length = 383 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 39/221 (17%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL------------ 59 + + G + I+ L++ +GR+ HA LF G +G G ++ YA ++L Sbjct: 4 KEILGQDHIKNHLTKSAEAGRIPHAQLFVGPEGCGTLSMAIAYAQYILCGNIRGENVGEN 63 Query: 60 ----------QNPD----FSKAPVRMCNPDPCS--------PFVKQMASHALHDFLYLSY 97 +PD F A P S F+ + +L D+L + Sbjct: 64 TTCNLKFEHFSHPDLHFVFPVASTDAVKSHPVSDNFMVEWRQFLTESPYGSLFDWLK-NL 122 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + K G +I VDE I LSL A G ++V++I D MN ++AN LLK LEEP Sbjct: 123 GIQNKQG----LIGVDEATEINKKLSLKAYEGGYKVMIIWMADKMNGSSANKLLKLLEEP 178 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 P K +FILI+ + +L TI SRC I F LSE+ + +AL Sbjct: 179 PAKTVFILITENTGDMLQTILSRCQVIDFIGLSESVIAEAL 219 >gi|154248975|ref|YP_001409800.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium nodosum Rt17-B1] gi|154152911|gb|ABS60143.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium nodosum Rt17-B1] Length = 517 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 25/247 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I+K L+ +++HA +F G +G GK T A + + Sbjct: 6 RKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCEKN 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C C Q + H D + L + N +DEIR+I+ + Sbjct: 66 QFGEPCNECTS--C-----QAIDNGSHLDVIELDAASNR---------GIDEIRKIKEGV 109 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + T G ++V +ID V + R A NALLK+LEEPPQ ++FIL + I TI SRC Sbjct: 110 NFTPVMGKYKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCH 169 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFV-KIA--AYGSVARAI----KILHYDCDK 234 ++F ++SE N+ L+ + + G+D + + KIA A G + A+ +++ Y + Sbjct: 170 VLEFRNISEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGGE 229 Query: 235 IISSYID 241 + +D Sbjct: 230 VTEKIVD 236 >gi|15617079|ref|NP_240292.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681831|ref|YP_002468217.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682386|ref|YP_002468770.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471534|ref|ZP_05635533.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|14194666|sp|P57553|DPO3X_BUCAI RecName: Full=DNA polymerase III subunit gamma gi|25403641|pir||B84986 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp. (strain APS) gi|10039144|dbj|BAB13178.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622119|gb|ACL30275.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624674|gb|ACL30829.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086205|gb|ADP66287.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086783|gb|ADP66864.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087371|gb|ADP67451.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 361 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Y + + G + I +S GR+HHA L G +GIGK T+ A + Sbjct: 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C K++ D + + G RT V+E+R I Sbjct: 65 QNGITSDPCRQC------IICKEIEKGLCLDVIEID-------GASRT--KVEEMREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++R++ NALLK+LEEPP+ V F+L + I TI SR Sbjct: 110 SIYYSPIKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV--KIA--AYGSVARAIKILHY 230 CL K +SE ++K L+ + I ++ KIA A+GS+ A+ +L + Sbjct: 170 CLYFKLQIISEEKIFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEH 223 >gi|167760307|ref|ZP_02432434.1| hypothetical protein CLOSCI_02680 [Clostridium scindens ATCC 35704] gi|167662190|gb|EDS06320.1| hypothetical protein CLOSCI_02680 [Clostridium scindens ATCC 35704] Length = 329 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 22/216 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+DI ++ ++ HA + GE+G GK L +A +L Sbjct: 7 VVGHKDIINYIRNAVREDKVSHAYILNGERGAGKKMLANLFAATLL---------CEKGG 57 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 PDPC+ +Q S D + +++ P + I+VD+IR ++ + + G Sbjct: 58 PDPCNECHSCRQAESGNHPDIIKVTHE-KPNS------ISVDDIREQVNNTIMIKPYQGP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +I D M A NALLK++EEPP+ + +L++ + T+L TI SRC+ +K ++ Sbjct: 111 YKVYIIPQADMMTTQAQNALLKTIEEPPEYAVIMLLTENADTLLPTINSRCVMLKLRNIK 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + K L E +++ D K D A G++ RAI Sbjct: 171 DTLIKKYLMETMQV--PDYKADMCTAFAQGNMGRAI 204 >gi|325127880|gb|EGC50785.1| DNA polymerase III, delta' subunit [Neisseria meningitidis N1568] Length = 325 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 10/153 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R +A LF G++ GK T R+A L + P P C C F + SH Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKALLCETPALGCKPCGECMS--CHLFGQ--GSHP- 72 Query: 90 HDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN AAN Sbjct: 73 -DFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAAN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 132 SLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|289523191|ref|ZP_06440045.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503734|gb|EFD24898.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 557 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I K L S ++ HA LF G +G GK T+ R L PD Sbjct: 7 RKYRPGRFSDVVGQDGIVKILKHSLRSKKIGHAFLFSGPRGCGKTTVA-RIVAKALNCPD 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 R P K ++ D + + + N ++EIR ++ + Sbjct: 66 -----AREGEPCDSCEVCKTISRGESLDVIEIDGASNR---------GIEEIRNLKSQIG 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L + + ++V +ID V + A NALLK+LEEPPQ+V+FIL + A + TIRSRCL Sbjct: 112 LASFSLPYKVYIIDEVHMLTDAAFNALLKTLEEPPQRVVFILATTAPEKVPLTIRSRCLR 171 Query: 184 IKFNSLSENNLYKAL 198 FN LS ++ L Sbjct: 172 FYFNRLSSVDIVNRL 186 >gi|15676667|ref|NP_273811.1| DNA polymerase III subunit delta' [Neisseria meningitidis MC58] gi|254804649|ref|YP_003082870.1| DNA polymerase III, delta' subunit [Neisseria meningitidis alpha14] gi|7226000|gb|AAF41182.1| putative DNA polymerase III, delta prime subunit [Neisseria meningitidis MC58] gi|254668191|emb|CBA04913.1| DNA polymerase III, delta' subunit [Neisseria meningitidis alpha14] gi|254669901|emb|CBA04423.1| DNA polymerase III, delta' subunit [Neisseria meningitidis alpha153] gi|254672860|emb|CBA07092.1| DNA polymerase III, delta' subunit [Neisseria meningitidis alpha275] gi|261392862|emb|CAX50443.1| DNA polymerase III delta' subunit [Neisseria meningitidis 8013] gi|316983754|gb|EFV62735.1| DNA polymerase III, delta' subunit [Neisseria meningitidis H44/76] gi|325133717|gb|EGC56373.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M13399] gi|325140077|gb|EGC62606.1| DNA polymerase III, delta' subunit [Neisseria meningitidis CU385] gi|325200545|gb|ADY96000.1| DNA polymerase III, delta' subunit [Neisseria meningitidis H44/76] gi|325203856|gb|ADY99309.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M01-240355] Length = 325 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 20/158 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|121634565|ref|YP_974810.1| DNA polymerase III subunit delta' [Neisseria meningitidis FAM18] gi|120866271|emb|CAM10012.1| putative DNA polymerase III, delta' subunit [Neisseria meningitidis FAM18] gi|325131996|gb|EGC54695.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M6190] Length = 325 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 18/157 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R +A LF G++GIGK R+A L +NP R C F +Q SH Sbjct: 19 RRPNAWLFAGKKGIGKTEFA-RFAAQALLCENPSPDH---RACGACASCHFFEQ-GSHP- 72 Query: 90 HDFLYLSYSLNP-----KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 DF Y + P + G+ I +D +R I + LT+ G RV++I P + MN Sbjct: 73 -DF----YEITPLSDESENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVVLIHPAESMNI 127 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 128 QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|325137827|gb|EGC60402.1| DNA polymerase III, delta' subunit [Neisseria meningitidis ES14902] Length = 325 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 18/157 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R +A LF G++GIGK R+A L +NP R C F +Q SH Sbjct: 19 RRPNAWLFAGKKGIGKTEFA-RFAAQALLCENPSPDH---RACGACASCHFFEQ-GSHP- 72 Query: 90 HDFLYLSYSLNP-----KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 DF Y + P + G+ I +D +R I + LT+ G RV++I P + MN Sbjct: 73 -DF----YEITPLSDESENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVVLIHPAESMNI 127 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 128 QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|325143133|gb|EGC65479.1| DNA polymerase III subunit delta' [Neisseria meningitidis 961-5945] Length = 412 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 20/158 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFVGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|308271748|emb|CBX28356.1| hypothetical protein N47_G36800 [uncultured Desulfobacterium sp.] Length = 344 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 44/243 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA---------- 55 F+P+ +Q++ L+ + HALLF G +G GK ++A Sbjct: 4 FEPIADQKIPS-----AILNTLLGKSAIPHALLFLGMEGTGKQVAAIKFAMACNCLANSA 58 Query: 56 ---------GHVLQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTG 104 G VL+NP+ + PC + +++ S + D + + S G Sbjct: 59 SKSSLHSDKGGVLKNPE---------DEIPCGDCISCRKILSKSHPDIIEIKPS-----G 104 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + I + +IR + L+L RV++I V MN A NA+LK LEEPP++ + I Sbjct: 105 SY---IKIAQIRDLCEILALKPYEAKIRVVIISDVQTMNAAAGNAILKVLEEPPERTVLI 161 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 L + I+ TI SRC ++FN +S+ L + L + K + DS F + A GS +RA Sbjct: 162 LTATEQSDIIPTIASRCQFVRFNPVSQTRLAEMLVETKGITPDSAAIFAAM-ANGSFSRA 220 Query: 225 IKI 227 ++I Sbjct: 221 LEI 223 >gi|307298980|ref|ZP_07578782.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] gi|306915405|gb|EFN45790.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] Length = 485 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + +++ L + ++ HA +F G +G GK T A + + Sbjct: 7 RKYRPRNFNELVGQDQVKEILGKAIEKNKLSHAYIFSGSRGTGKTTSARILAKMLNCLSE 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S+ P +C D C K + S + D + L +R + DEIR+IR +S Sbjct: 67 GSEKPCGVC--DSC----KAIDSSSHMDVVELD------AASYRGI---DEIRKIRDAVS 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + R A NALLK+LEEPP +V+FIL + + TI SRC Sbjct: 112 YRPVMGKFKVYIIDEFHMLTREAFNALLKTLEEPPDRVVFILATTNLEKVPETILSRCQI 171 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILH 229 F L E ++ LE++ + + +D K ++ AA+G + A+ ++ Sbjct: 172 FYFKPLREEDIVTYLERIARAEELQYDEKALRYISKAAHGGMRDAVNLME 221 >gi|291532777|emb|CBL05890.1| DNA polymerase III, subunits gamma and tau [Megamonas hypermegale ART12/1] Length = 334 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 32/286 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E I + LS +G++ HA LF G +G GK + A + + Sbjct: 8 RKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKAL----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P PC+ V +++ + D + + N +DEIR +R Sbjct: 64 CEHGP----TPTPCNQCVCCQKINDGSFMDVFEIDAASNRG---------IDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + + TI+SRC Sbjct: 111 VKFAPVDGKYKVYIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKI-MGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIIS 237 F ++++++ K L + MG ++ +D + I A G + A+ +L D+ ++ Sbjct: 171 QRYDFKRITKDDILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLL----DQCLA 226 Query: 238 SYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFI 278 D + + + L + QI D L +D + L E I Sbjct: 227 FTKDELTVTQVRKVLGLVGHDWVWQITDALAKKDSQTILTILDEVI 272 >gi|295131918|ref|YP_003582594.1| DNA polymerase III subunit delta' [Zunongwangia profunda SM-A87] gi|294979933|gb|ADF50398.1| DNA polymerase III subunit delta' [Zunongwangia profunda SM-A87] Length = 384 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 130/294 (44%), Gaps = 45/294 (15%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----------QNP 62 + G I+ L+ + R+ HA LF G G G + YA ++L NP Sbjct: 5 EIVGLPHIKNHLTTTADNSRIAHAQLFIGNSGSGTLPMAIAYAQYLLCKNQDGENQHGNP 64 Query: 63 DFSKAPVRMCNPD----------------PCSP--------FVKQMASHALHDFLYLSYS 98 + + +PD P S F++ +L D+ Y Sbjct: 65 SCNLKFTNLSHPDLHFAFPVATNQTIKSHPVSANFMEDWRRFIQHRPYGSLTDW-YEHIG 123 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K G+ I VDE + I LSL A G +V++I D MN AAN LLK +EEPP Sbjct: 124 IENKQGQ----IGVDEAQDIVKSLSLKAYEGGLKVMIIWMADRMNTAAANKLLKLIEEPP 179 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 K +FILI+ I+ TI+SRC ++KF L+E ++ + L K M + + + Sbjct: 180 NKTIFILIAEDEEQIIQTIKSRCQTLKFPPLAEADIAEKLMASKNMN-TQEASLIAHQSN 238 Query: 219 GSVARAIKILHYDC--DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 GS RA+ +L D D+ +I+ + R + + + EL+S ++IA Sbjct: 239 GSYTRALHLLEKDTADDQYEQWFIEWV---RTAFKAKGNKATVLELISWSEEIA 289 >gi|320352450|ref|YP_004193789.1| DNA polymerase III, delta prime subunit [Desulfobulbus propionicus DSM 2032] gi|320120952|gb|ADW16498.1| DNA polymerase III, delta prime subunit [Desulfobulbus propionicus DSM 2032] Length = 330 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 23/229 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G L + SGR+ HA LF G G+GK T+ A +L P +C Sbjct: 6 ILGQAKALALLDRALHSGRLAHAYLFAGPDGVGKTTVALELAAVLLCRAPREDRPCGVC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P ++ S D + + P+ I +D+IR ++ LS RV Sbjct: 65 -----PGCRKFQSGNHPDLVRI----RPEG----AAIKIDQIRELKKALSFPPLESRQRV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++++ V M R A N+LLK LEEPP + IL+ +A+ IL TI SRC I F L Sbjct: 112 VLLEEVHTMRREAGNSLLKVLEEPPADNILILMGNATGAILDTIVSRCQLIPFAPLP--- 168 Query: 194 LYKALEQLKIMG---WDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 L A E L+I ++ R + A G +A L +D D I++ Y Sbjct: 169 LPLAAEILRIHRPELHEADRSALAALADGCPGQA---LAFDADGILTVY 214 >gi|288925623|ref|ZP_06419555.1| DNA polymerase III, gamma and tau subunit protein [Prevotella buccae D17] gi|288337561|gb|EFC75915.1| DNA polymerase III, gamma and tau subunit protein [Prevotella buccae D17] Length = 365 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 18/205 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---------QNP 62 + + G D E+ L Q R+ HA+LF G +G GK + +A H+L ++P Sbjct: 4 EEVIGQADAEQRLLQLEREQRIPHAMLFCGPEGCGKMAVALAFASHLLGDSPMLRKWEHP 63 Query: 63 D--FS----KAPVRMCNPDPCSP-FVKQMASHALHD--FLYLSYSLNPKTGKWRTVITVD 113 D FS K P + P S F K+ L D F + + +IT Sbjct: 64 DLHFSYPTVKLPSMAGDHQPVSDDFAKEWHQMLLEDPYFTMNRWMQAMGAANQQAIITAA 123 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 E I LSL ++ G +++ +I + MN +AN LLK LEEPPQ+ +FIL+S A + Sbjct: 124 ESDEIARKLSLKSSQGGYKICIIWLPERMNPASANKLLKLLEEPPQQTVFILVSEAPEQL 183 Query: 174 LSTIRSRCLSIKFNSLSENNLYKAL 198 L TIRSR I+ + +L +AL Sbjct: 184 LETIRSRTQRIELRKIDTPSLEQAL 208 >gi|256820071|ref|YP_003141350.1| DNA polymerase III subunit delta' [Capnocytophaga ochracea DSM 7271] gi|256581654|gb|ACU92789.1| DNA polymerase III subunit delta' [Capnocytophaga ochracea DSM 7271] Length = 373 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRM 71 + G++ I+ +L +GR+ HA LF +G G + YA +L NP ++ Sbjct: 4 ILGYDTIKNYLQASVEAGRIPHAQLFVAGEGQGALPMAIAYATLILSHDNPKAKAQCAQL 63 Query: 72 CNPD----------------PCSP--------FVKQMASHALHDFL-YLSYSLNPKTGKW 106 +PD P S FVK+ +L D+L +L K Sbjct: 64 AHPDLHFAFPTAINDKVKKDPISALFMDEWRAFVKEQPYGSLFDWLVFLGIE------KK 117 Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + I V+E + I L+L + G ++V++I + MN A+N LLK LEEP K +F+L+ Sbjct: 118 QANIGVNEAKEITNKLALKSFEGGYKVMIIWMAEKMNAEASNKLLKLLEEPADKTVFLLV 177 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 +L TI+SRC ++F LSEN + +AL + + D++ + + A G+ +A++ Sbjct: 178 VEDENALLDTIKSRCQILRFPPLSENAIKEALVERGLA--DAEATKIALRAQGNFNKALQ 235 Query: 227 ILH 229 +++ Sbjct: 236 LMN 238 >gi|161869713|ref|YP_001598880.1| DNA polymerase III subunit delta' [Neisseria meningitidis 053442] gi|161595266|gb|ABX72926.1| DNA polymerase III, delta' subunit [Neisseria meningitidis 053442] Length = 325 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 20/158 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RV++I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVVLIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 127 IQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|325142025|gb|EGC64457.1| DNA polymerase III, delta' subunit [Neisseria meningitidis 961-5945] gi|325197989|gb|ADY93445.1| DNA polymerase III, delta' subunit [Neisseria meningitidis G2136] Length = 325 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 20/158 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFVGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|58617021|ref|YP_196220.1| DNA polymerase III subunit gamma [Ehrlichia ruminantium str. Gardel] gi|58416633|emb|CAI27746.1| DNA polymerase III subunit gamma [Ehrlichia ruminantium str. Gardel] Length = 296 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 29/164 (17%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGKATL + +A H+ Q DF + NPD L + Sbjct: 24 LLYGSRGIGKATLAYNFAQHITQFTDF-----KCHNPD----------------LLII-- 60 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 G +I +++IR I+ FL L+ + ++++ID +D +N NA NA+LK LEEP Sbjct: 61 ------GDNEGIIGIEKIRNIKNFLYLSTARSHNKIVIIDSIDNLNINATNAILKILEEP 114 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 P + ILISH + IRSRC + + L+ + + L+ + Sbjct: 115 PNNSIIILISHNLHAVPVVIRSRCFLLGLSDLNTSETQQVLQTI 158 >gi|304387922|ref|ZP_07370095.1| DNA-directed DNA polymerase III subunit delta' [Neisseria meningitidis ATCC 13091] gi|304338019|gb|EFM04156.1| DNA-directed DNA polymerase III subunit delta' [Neisseria meningitidis ATCC 13091] Length = 325 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 20/158 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFVGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 H-----DFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF ++ S P+ G+ I +D +R I + LT+ G RVI+I P + MN Sbjct: 67 GQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|325266745|ref|ZP_08133419.1| DNA-directed DNA polymerase III subunit delta' [Kingella denitrificans ATCC 33394] gi|324981793|gb|EGC17431.1| DNA-directed DNA polymerase III subunit delta' [Kingella denitrificans ATCC 33394] Length = 331 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 136/315 (43%), Gaps = 27/315 (8%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 H+ I + L ++ R+ HA L G + GK A +L ++P P C Sbjct: 6 HQPIWQQLVSHW--QRLPHACLLIGREHTGKTAFARHLAQALLCEHPSSLHEPCGQC--- 60 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT----VITVDEIRRIRYFLSLTANTGYW 131 P A A DF YL P+TG+ I +D IR I L T+ G Sbjct: 61 ---PSCHLFAQDAHPDF-YLLTPEQPETGETTARKLQQIKIDVIRAILEPLQQTSVRGGR 116 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV+ I P + MN AANALLK LEEPP+ V+FIL+SH + +L TIRSRC ++ L Sbjct: 117 RVVCISPAESMNVQAANALLKMLEEPPEAVVFILVSHNADRVLPTIRSRCRALL---LPP 173 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA 251 + AL+ + +S + A+ S A + + D+ + L+ PR Sbjct: 174 PDAATALQFWRQAHPESADQAAPLLAFHSHAPLFEP-QPEQDQWREQLLQLLAEPRLLAI 232 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL-----SGQLEEADQIAQIY- 305 L Q + L + D+L +++L + S + A L L Q Q + Sbjct: 233 LDYAAQWDKQKLP--LAVLLDWLYKWLLDMLLVSQQQAPLYYPHHQSSLHTVAQKTQPHT 290 Query: 306 -FSLVKRVHAFSMYN 319 F L+ VH S Y Sbjct: 291 LFRLIDHVHRLSPYG 305 >gi|323140331|ref|ZP_08075263.1| putative DNA polymerase III, delta' subunit [Phascolarctobacterium sp. YIT 12067] gi|322415189|gb|EFY05976.1| putative DNA polymerase III, delta' subunit [Phascolarctobacterium sp. YIT 12067] Length = 341 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 14/237 (5%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GH + +KFL Y + HALLF G G+GK TL +A +L F Sbjct: 3 EHIIGHTEQKKFLQNYLQAKERPHALLFSGAAGLGKRTLALEFAKALLC---FQHNGTDG 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + C Q + + DF+ + + + K + R I +D+IR + +L Sbjct: 60 C--EACRLMNLQDGNLSHPDFVLVQHEWDDKKDRLRDTIIIDQIRELTAKTALAPVMSPT 117 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV +++ D M AANA LK LEEPP + IL++ +L TI SR + ++F ++ Sbjct: 118 RVCIVEDADTMVPAAANAFLKLLEEPPAGWVIILLAANVNRLLPTIMSRVVQLRFQAIEP 177 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH-------YDCDKIISSYID 241 + + L+ +I +K + + GS+ A+ + ++C K +++++ Sbjct: 178 QLVEQELQARQIE--PAKAAVLARISEGSIGLALNLAAAKGQLDVFECRKQAATFLE 232 >gi|326795548|ref|YP_004313368.1| DNA polymerase III delta prime subunit [Marinomonas mediterranea MMB-1] gi|326546312|gb|ADZ91532.1| DNA polymerase III, delta prime subunit [Marinomonas mediterranea MMB-1] Length = 303 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 25/217 (11%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E + K ++ +G HHAL+ GE+G+G+ L A ++ + AP C+ Sbjct: 2 ESLHKKACEWRKNGTFHHALMLTGEEGVGQDVLARALADLLM--CEVKAAPCGQCHS--- 56 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + MA+ + D+L++ S I VD IR++ +S A G +V++ Sbjct: 57 ---CQLMAAGSHPDYLFVDGS--------EGTIKVDVIRQLIQRVSKKAQVGKTKVLLFK 105 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 MN NAANA+LK+LEEPP+ FIL + S +L TI+SRC + +S ++ + Sbjct: 106 DAHAMNINAANAVLKALEEPPENTFFILTTSNSFGMLPTIQSRCQKMVLDSPTKEEVIAW 165 Query: 198 LE-----QLKIMGWDSKRDF----VKIAAYGSVARAI 225 LE ++ + W +++ F +K + Y + RA+ Sbjct: 166 LEREGHTEVSDLFWLAQQPFHLLALKESGYDKLYRAL 202 >gi|315606405|ref|ZP_07881420.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] gi|315251811|gb|EFU31785.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] Length = 365 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 18/205 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---------QNP 62 + + G D E+ L Q R+ HA+LF G +G GK + +A H+L ++P Sbjct: 4 EEVIGQTDAEQRLLQLEREQRIPHAMLFCGPEGCGKMAVALAFASHLLGDSPMLRKWEHP 63 Query: 63 D--FS----KAPVRMCNPDPCSP-FVKQMASHALHD--FLYLSYSLNPKTGKWRTVITVD 113 D FS K P + P S F K+ L F + + +IT Sbjct: 64 DLHFSYPTVKLPSMAGDRQPVSDDFAKEWHQMLLEGPYFTMNRWMQAMGAANQQAIITAA 123 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 E I LSL +N G +++ +I + MN +AN LLK LEEPPQ+ +FIL+S A + Sbjct: 124 ESDEIARKLSLKSNQGGYKICIIWLPERMNPASANKLLKLLEEPPQQTVFILVSEAPEQL 183 Query: 174 LSTIRSRCLSIKFNSLSENNLYKAL 198 L TIRSR I+ + +L +AL Sbjct: 184 LETIRSRTQRIELRKIDTPSLEQAL 208 >gi|194098081|ref|YP_002001129.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae NCCP11945] gi|240016102|ref|ZP_04722642.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae FA6140] gi|240080243|ref|ZP_04724786.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae FA19] gi|240112456|ref|ZP_04726946.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae MS11] gi|240117482|ref|ZP_04731544.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae PID1] gi|254493260|ref|ZP_05106431.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291] gi|260440986|ref|ZP_05794802.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae DGI2] gi|268596394|ref|ZP_06130561.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19] gi|268598525|ref|ZP_06132692.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11] gi|268603183|ref|ZP_06137350.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1] gi|291044313|ref|ZP_06570022.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2] gi|193933371|gb|ACF29195.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae NCCP11945] gi|226512300|gb|EEH61645.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291] gi|268550182|gb|EEZ45201.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19] gi|268582656|gb|EEZ47332.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11] gi|268587314|gb|EEZ51990.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1] gi|291011207|gb|EFE03203.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2] Length = 325 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 22/173 (12%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPD 75 H++ + +++++ S +A LF G++G GK R+A L +C P Sbjct: 6 HQEQWRQIAEHWTS--RPNAWLFVGKKGTGKTAFA-RFAAKAL-----------LCETPA 51 Query: 76 P-CSPFVKQMASHAL----HDFLYLSYSL--NPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P C P + M+ H H Y L P+ G+ I +D +R I + LT+ Sbjct: 52 PGCKPCGECMSCHLFGRGSHPDFYEITPLADEPENGRKLLRIKIDAVREIIDNVYLTSVR 111 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RVI+I P + MN AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 112 GGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|77460372|ref|YP_349879.1| DNA polymerase III subunit delta' [Pseudomonas fluorescens Pf0-1] gi|77384375|gb|ABA75888.1| DNA polymerase III, delta' subunit [Pseudomonas fluorescens Pf0-1] Length = 327 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 32/204 (15%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPC----SPFVK 82 +GR HA L G GIGK L R +L Q P P+ C S + Sbjct: 16 AGRTQHAHAYLLHGPAGIGKRALAERLMASLLCQRP----------TPEACGECKSCLLL 65 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + SH + Y L P+ I VD++R + F+ TA G +V++I+PV+ M Sbjct: 66 KAGSHPDN------YILEPEEAD--KAIKVDQVRDLVSFVVQTAQLGGRKVVLIEPVESM 117 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS----IKFNSLSENNLYKAL 198 N NAANALLKSLEEP + +L+SH +L TI+SRC+ + S+S L +AL Sbjct: 118 NINAANALLKSLEEPSGDTVLLLVSHQPSRLLPTIKSRCVQQACPLPSESVSLQWLAQAL 177 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVA 222 + D + + + +AA +A Sbjct: 178 PECSE---DERVELLTLAAGSPLA 198 >gi|59800791|ref|YP_207503.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae FA 1090] gi|240013663|ref|ZP_04720576.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae DGI18] gi|240115196|ref|ZP_04729258.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae PID18] gi|240120733|ref|ZP_04733695.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae PID24-1] gi|240123036|ref|ZP_04735992.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae PID332] gi|240125289|ref|ZP_04738175.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae SK-92-679] gi|268600877|ref|ZP_06135044.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18] gi|268681664|ref|ZP_06148526.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332] gi|268683891|ref|ZP_06150753.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679] gi|293399504|ref|ZP_06643657.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae F62] gi|59717686|gb|AAW89091.1| putative DNA polymerase III, delta' subunit [Neisseria gonorrhoeae FA 1090] gi|268585008|gb|EEZ49684.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18] gi|268621948|gb|EEZ54348.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332] gi|268624175|gb|EEZ56575.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679] gi|291610073|gb|EFF39195.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae F62] Length = 325 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 22/173 (12%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPD 75 H++ + +++++ S +A LF G++G GK R+A L +C P Sbjct: 6 HQEQWRQIAEHWTS--RPNAWLFVGKKGTGKTAFA-RFAAKAL-----------LCETPA 51 Query: 76 P-CSPFVKQMASHAL----HDFLYLSYSL--NPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P C P + M+ H H Y L P+ G+ I +D +R I + LT+ Sbjct: 52 PGCKPCGECMSCHLFGRGSHPDFYEITPLADEPENGRKLLRIKIDAVREIIDNVYLTSVR 111 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RVI+I P + MN AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 112 GGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|149369362|ref|ZP_01889214.1| putative DNA polymerase III, delta subunit [unidentified eubacterium SCB49] gi|149356789|gb|EDM45344.1| putative DNA polymerase III, delta subunit [unidentified eubacterium SCB49] Length = 382 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 85/321 (26%), Positives = 147/321 (45%), Gaps = 43/321 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +NQ + G E I+ L +GR+ HA LF G+ G+G + YA +L P +P Sbjct: 3 FNQ-IIGQEHIKAHLQTSVTNGRVAHAQLFVGKVGVGILPMAIAYASALLCKPYEEGSPE 61 Query: 70 ---------RMCNPD-----PCSPFVKQMASHALHDFLYLSY----SLNPKTGKWRTV-- 109 ++ +PD P + K + H + D + S NP ++ + Sbjct: 62 YLMTKERVRKLAHPDLNFVFPVNTNDK-IRKHPVSDLFIEEWRNFVSENPYGSQFEWLSS 120 Query: 110 ---------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 I VDE I +SL + G +++I+I D MN + AN +LK +EEPP+ Sbjct: 121 LGIEKKQGSIKVDEALEIVKKMSLKSYEGGYKIIIIWMADTMNTDCANKILKLVEEPPKN 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS-KRDFVKIAAYG 219 + +L++ I++TIRSRC + F LSE + K L ++I G ++ K V A G Sbjct: 181 TVLLLLTEKEEQIINTIRSRCQKLDFPLLSELQIAKQL--IEIEGVETIKAQNVSRLAQG 238 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPR------QEYALQKMQQIADELLSQDQKIAFDF 273 +A+++L + D + L + + A+Q + + ++ L + ++ F Sbjct: 239 DYNKALQLLDDESDDALFEQWFLTWVRNAFLAKGNKKAIQALLKWSENLAGEGRETQKKF 298 Query: 274 L---IEFILKEICKSAKAAAL 291 L IEF + + K+ A +L Sbjct: 299 LSYCIEFFRQALLKNYGAESL 319 >gi|331005728|ref|ZP_08329089.1| DNA polymerase III delta prime subunit [gamma proteobacterium IMCC1989] gi|330420445|gb|EGG94750.1| DNA polymerase III delta prime subunit [gamma proteobacterium IMCC1989] Length = 328 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 18/175 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 + HALL G+QGIGK A ++L D + R C ++ +H Sbjct: 7 KTPHALLLSGQQGIGKWHFAESLADYLLCLSPKADLACGQCRSCQ-------LRLAGTHP 59 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + + + GK I +D++R + F++ T+ G +V+++ PV+ +N N+AN Sbjct: 60 DK-----KWCMPDEPGK---AIKIDQVRELSGFIAKTSQQGGKKVVLLGPVEQLNINSAN 111 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 ALLKSLEEP + IL++H +++TIRSRC + S S + + L+QL++ Sbjct: 112 ALLKSLEEPAGDTILILVTHVLSGVMATIRSRCQLLPLASPSTDVALEWLQQLQV 166 >gi|240127742|ref|ZP_04740403.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae SK-93-1035] gi|268686134|ref|ZP_06152996.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035] gi|268626418|gb|EEZ58818.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035] Length = 325 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 22/173 (12%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPD 75 H++ + +++++ S +A LF G++G GK R+A L +C P Sbjct: 6 HQEQWRQIAEHWTS--RPNAWLFVGKKGTGKTAFA-RFAAKAL-----------LCETPA 51 Query: 76 P-CSPFVKQMASHAL----HDFLYLSYSL--NPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P C P + M+ H H Y L P+ G+ I +D +R I + LT+ Sbjct: 52 PGCKPCGECMSCHLFGRGSHPDFYEITPLADEPENGRKLLRIKIDAVREIIDNVYLTSVR 111 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RVI+I P + MN AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 112 GGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|167629309|ref|YP_001679808.1| DNA polymerase iii delta prime subunit, putative [Heliobacterium modesticaldum Ice1] gi|167592049|gb|ABZ83797.1| DNA polymerase iii delta prime subunit, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 26/194 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ G E + LS+ + R+ HA LF G QG+GK T +A VL + Sbjct: 7 QITGQERAIRQLSRGLLANRVAHAYLFSGPQGVGKKTAARAFAQSVLC--------LERA 58 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR----RIRYFLSLTA 126 D C+ P +Q + D +SL+P+ T + +++IR RIRY L++ Sbjct: 59 GGDACASCPACRQFQGGSHPDL----FSLSPEG----TTLKIEQIRNLQKRIRYRPYLSS 110 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +V++I+ + M +ANALLK LEEPP +FILI+ IL TIRSRCL + F Sbjct: 111 H----QVVLIEQAETMQGPSANALLKILEEPPGPTVFILITDRGHGILPTIRSRCLPVYF 166 Query: 187 NSLSENNLYKALEQ 200 + + + L++ Sbjct: 167 QPVPSGEIARFLKE 180 >gi|330810987|ref|YP_004355449.1| DNA polymerase III, subunit delta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379095|gb|AEA70445.1| DNA polymerase III, subunit delta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 328 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 97/201 (48%), Gaps = 16/201 (7%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G GIGK L R +L Q P S A C + S + + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLLCQRPGVSNA----CG-ECKSCLLLKAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ T+ G +V++I+PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KAIKVDQVRDLVSFVVQTSQMGGRKVVLIEPVESMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANALLKSLEEP + +L+SH +L TI+SRC+ SE + L Q Sbjct: 123 ANALLKSLEEPSGDTVLLLVSHQPSRLLPTIKSRCVQQACPLPSEAMSLQWLAQALPDSS 182 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 D +R + A GS A+ + Sbjct: 183 DEERVELLTLAAGSPLAAVSL 203 >gi|170720717|ref|YP_001748405.1| DNA polymerase III subunit delta' [Pseudomonas putida W619] gi|169758720|gb|ACA72036.1| DNA polymerase III, delta prime subunit [Pseudomonas putida W619] Length = 328 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 22/204 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G QGIGK L R +L Q P A + C S + S Sbjct: 16 AGRAQHAHAYLLHGPQGIGKRALAERLMARLLCQQPQGLDACGK-CK----SCLLLNAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + + L P+ I VD++R + F+ TA G +VI+I+PV+ MN NA Sbjct: 71 HPDN------FVLEPEEAD--KPIKVDQVRELVSFVVQTAQLGGRKVILIEPVEAMNVNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC--LSIKFNSLSENNLYKALEQLKIM 204 +NALLKSLEEP + +L+SH +L TI+SRC +S SL++ + A + Sbjct: 123 SNALLKSLEEPSGDTVLLLVSHQPSRLLPTIKSRCQQVSCPQPSLAQGQAWLA---TALA 179 Query: 205 GWD-SKRDFVKIAAYGSVARAIKI 227 G D ++RD + A GS A+ + Sbjct: 180 GSDETERDELLTLAAGSPLMAMNL 203 >gi|302341675|ref|YP_003806204.1| DNA polymerase III, delta prime subunit [Desulfarculus baarsii DSM 2075] gi|301638288|gb|ADK83610.1| DNA polymerase III, delta prime subunit [Desulfarculus baarsii DSM 2075] Length = 349 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 17/242 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT------LGFRYAGHVLQNPDFSKA 67 L G + L+ +G++ HA LF G +G+G+AT L G F A Sbjct: 6 LLGQARVTAQLTAEMAAGKLAHAYLFCGPEGVGRATAALELFLALNCQGAADGGGLFGGA 65 Query: 68 PVRMCNPDPC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + P PC P Q A H+ L L L P + I V+++R + Sbjct: 66 -AQEDRPHPCRHCPAC-QRAQAWRHEELLL---LQPPGEAASSQIKVEDVREAMAAMRFA 120 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G R+++I MN AANALLK+LEEPP + + +L +L TI SRC + Sbjct: 121 PLGGATRMLLIRQAQQMNATAANALLKTLEEPPPRNIIVLTVGDPRELLPTIVSRCRKVN 180 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIA-AYGSVARAIKILHYDCDKIISSYIDLIH 244 F L+E + +A L G D + ++ A GS+ RA+ + H + +++ + Sbjct: 181 FAPLTEETIRQA---LLARGLDQAQASLRAAMGGGSLGRALCLDHEEQQRLLGRLRQALA 237 Query: 245 IP 246 P Sbjct: 238 RP 239 >gi|146306665|ref|YP_001187130.1| DNA polymerase III subunit delta' [Pseudomonas mendocina ymp] gi|145574866|gb|ABP84398.1| DNA polymerase III, delta prime subunit [Pseudomonas mendocina ymp] Length = 330 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 18/202 (8%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G GIGK L R ++L Q+P A N C + + Sbjct: 16 AGRSQHAHAYLLHGPTGIGKRALAERLMAYLLCQSPSGLDA---CGNCKSC-----HLLA 67 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H ++ L P+ I VD++R + F+ TA G +V++++P + MN NA Sbjct: 68 AGTHPD---NFVLEPEEAD--KPIKVDQVRELVDFVVQTAQLGGRKVVLLEPAEAMNLNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ-LKIMG 205 ANALLKSLEEP + +LISH +L TI+SRC+ SE L Q L +G Sbjct: 123 ANALLKSLEEPSGNTVLLLISHQPSRLLPTIKSRCVQQACPLPSEATSLAWLAQALPELG 182 Query: 206 WDSKRDFVKIAAYGSVARAIKI 227 D + D + +AA GS A+++ Sbjct: 183 DDERSDLLTLAA-GSPLAAVRL 203 >gi|317498613|ref|ZP_07956906.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|291558496|emb|CBL37296.1| DNA polymerase III, subunits gamma and tau [butyrate-producing bacterium SSC/2] gi|316894100|gb|EFV16289.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 534 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 33/283 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I K L +GR+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV + +PC K +A + + + + + N VD IR I+ Sbjct: 63 NCEHPV---DGEPCGECEVCKAIAEGSSMNVIEIDAASNN---------GVDNIREIKEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VQYSPATGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + K L EQ + D ++V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 Y+ D + +Q + D +LSQD D L Sbjct: 227 FYLGEKLTYDNVLEVLGTVDIQVYSDLLDMILSQDINGVMDLL 269 >gi|167767544|ref|ZP_02439597.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1] gi|167710836|gb|EDS21415.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1] Length = 531 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 33/283 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I K L +GR+ HA LF G +G GK T+ +L Sbjct: 5 RKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVA-----KILAKAV 59 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV + +PC K +A + + + + + N VD IR I+ Sbjct: 60 NCEHPV---DGEPCGECEVCKAIAEGSSMNVIEIDAASNN---------GVDNIREIKEQ 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 108 VQYSPATGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 167 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + K L EQ + D ++V A GS+ A+ +L D+ I+ Sbjct: 168 QRYDFHRITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLL----DQCIA 223 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 Y+ D + +Q + D +LSQD D L Sbjct: 224 FYLGEKLTYDNVLEVLGTVDIQVYSDLLDMILSQDINGVMDLL 266 >gi|57239023|ref|YP_180159.1| DNA polymerase III subunit gamma [Ehrlichia ruminantium str. Welgevonden] gi|58578964|ref|YP_197176.1| DNA polymerase III subunit gamma [Ehrlichia ruminantium str. Welgevonden] gi|57161102|emb|CAH58011.1| putative DNA polymerase III, delta prime subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417590|emb|CAI26794.1| DNA polymerase III subunit gamma [Ehrlichia ruminantium str. Welgevonden] Length = 296 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 29/164 (17%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGKATL + +A H+ Q DF + NPD L + Sbjct: 24 LLYGSRGIGKATLAYNFAQHITQFIDF-----KCHNPD----------------LLII-- 60 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 G +I +++IR I+ FL L+ + ++++ID +D +N NA NA+LK LEEP Sbjct: 61 ------GDNEGIIGIEKIRNIKNFLYLSTARSHNKIVIIDSIDNLNINATNAILKILEEP 114 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 P + ILISH + IRSRC + + L+ + + L+ + Sbjct: 115 PNNSIIILISHNLHAVPVVIRSRCFLLGLSDLNTSETQQVLQTI 158 >gi|46203331|ref|ZP_00051671.2| COG0470: ATPase involved in DNA replication [Magnetospirillum magnetotacticum MS-1] Length = 260 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 35/270 (12%) Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT-GYWRVIMIDPVDGM 142 MA+ + + + L P T I+VD R TA G WRV ++D + + Sbjct: 1 MAALSHPNLVALRRVQAPGAKTLPTRISVDAAREALALFGATAGGEGGWRVCIVDSAEDL 60 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N N+ANALLK +EEPP + +F+++SHA +L TIRSRC ++ L+E + +E Sbjct: 61 NANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALALRPLAEAEVRAVIE--- 117 Query: 203 IMGWDSKRDFV--------KIAAYGSVARAIKILHYDCDKIISSYIDLI-HIPRQEYALQ 253 G+ V + GSVARA+ +L + + L+ +P ++ + Sbjct: 118 --GFPPPFPPVDAAVLARAAALSEGSVARAVALLDPATAAVEAEVSALLAGLPEPDW--R 173 Query: 254 KMQQIADELLSQDQK----IAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIY---F 306 ++ ++A+ L +D + A D L + EI + Q E ++ + Sbjct: 174 RVLKLAETLAGRDAEPLLATALDGLQRHVAAEIDRR--------QGEGPARLLPLVEAAE 225 Query: 307 SLVKRVHAFSMYNLDRRQMI---FHLLSKA 333 + ++YNLDRR ++ F +L++A Sbjct: 226 RIAAAAREAAIYNLDRRPLVLSAFQVLAQA 255 >gi|312897472|ref|ZP_07756896.1| conserved domain protein [Megasphaera micronuciformis F0359] gi|310621533|gb|EFQ05069.1| conserved domain protein [Megasphaera micronuciformis F0359] Length = 330 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 33/234 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY-----A 55 M DRAF L GHE ++K GR+ HA +F G G GK Sbjct: 1 MADRAF----FDELIGHEQLKKRWIHLIEEGRVPHASIFSGPAGTGKTVAAVALASALVG 56 Query: 56 GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 VLQ+ DFS AP M H D Y+ G ++++ + Sbjct: 57 RKVLQHIDFS-APDSMI--------------HDGEDVFYI--------GPEKSMLKTAQF 93 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R ++ +SL + RV +ID V+ MN AN +LK+LEEP + ++FILI+ +L Sbjct: 94 RDLQEIISLRGSAQDIRVFIIDHVETMNAEFANRMLKTLEEPAEGIVFILITDKPAALLP 153 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 T+ SRC+ +F+S+ + L AL + + G + + + G+V A+ LH Sbjct: 154 TVVSRCVMFRFDSVGTDELTAAL-KTRYKGDEGLCEEAAFYSGGNVKAALDYLH 206 >gi|110003914|emb|CAK98254.1| putative dna polymerase III gamma/tau subunits protein [Spiroplasma citri] Length = 690 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G +I K L + HA LF G +G GK ++ +A + Sbjct: 8 RKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAI----- 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N +PC+ K++ D + + N VDEIR IR Sbjct: 63 ---NCINLDNGNPCNECASCKEINRAGAVDVFEIDAASNN---------GVDEIREIRNN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L ++V +ID + + +A NALLK+LEEPPQ V+FIL + S I +TI SRC Sbjct: 111 VQLLPTMTKYKVYIIDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +S ENN+ L++ +I + + + A GS ++ IL Sbjct: 171 QQYNFRKISKVELENNIINILQKEEIKYDLTAIKEIALLADGSARDSLSILE 222 >gi|311087868|gb|ADP67947.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 368 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Y + + G + I +S GR+HHA L G +GIGK T+ A + Sbjct: 12 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C K++ D + + G RT V+E+R I Sbjct: 72 QNGITSDPCRQC------IICKEIEKGLCLDVIEID-------GASRT--KVEEMREILD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++R++ NALLK+LEEPP+ V F+L + I TI SR Sbjct: 117 SIYYSPIKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV--KIA--AYGSVARAIKILHY 230 CL K +SE +++ L+ + I ++ KIA A+GS+ A+ +L + Sbjct: 177 CLYFKLQIISEEKIFEFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEH 230 >gi|218767890|ref|YP_002342402.1| DNA polymerase III subunit delta' [Neisseria meningitidis Z2491] gi|121051898|emb|CAM08204.1| putative DNA polymerase III, delta' subunit [Neisseria meningitidis Z2491] Length = 325 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 20/172 (11%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNP 74 H++ + +++++ S +A LF G++G GK R+A L + P P C Sbjct: 6 HQEQWRQIAEHWTS--RPNAWLFVGKKGTGKTAFA-RFAAKALLCEKPVTGNVPCGECAS 62 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKT-----GKWRTVITVDEIRRIRYFLSLTANTG 129 C F + SH DF Y + P T G+ I +D +R I + LT+ G Sbjct: 63 --CHLF--EQGSHP--DF----YEITPLTDERENGRKLLQIKIDAVREIIDNVYLTSVRG 112 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RVI+I P + MN AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC Sbjct: 113 GLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 >gi|39997328|ref|NP_953279.1| DNA polymerase III subunit delta' [Geobacter sulfurreducens PCA] gi|39984219|gb|AAR35606.1| DNA polymerase III, delta prime subunit [Geobacter sulfurreducens PCA] gi|298506265|gb|ADI84988.1| DNA polymerase III, delta-prime subunit [Geobacter sulfurreducens KN400] Length = 323 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G E L + SG+ HA LFEG +G GK T + D Sbjct: 5 RVLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRRD--------- 55 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C P ++MA D + L P+ G + I +D++R ++ LSL Sbjct: 56 --DGCGSCPSCRKMAGLQHPDL----HRLAPE-GAF---IKIDQVRELQRELSLRPVEAP 105 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + +ID D +N AANALLK+LEEPP L IL++ IL T+RSRC ++F+ L Sbjct: 106 MKACIIDDADRLNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLP 165 Query: 191 E 191 E Sbjct: 166 E 166 >gi|330966242|gb|EGH66502.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. actinidiae str. M302091] Length = 328 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E Q + HA L G GIGK L R +L KAP + C Sbjct: 9 ESLWQQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEGLEACGHCKSC 63 Query: 81 VKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + MA SH + Y L P+ I VD++R + F+ TA G +V++++PV Sbjct: 64 LLLMAGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|225570061|ref|ZP_03779086.1| hypothetical protein CLOHYLEM_06157 [Clostridium hylemonae DSM 15053] gi|225161531|gb|EEG74150.1| hypothetical protein CLOHYLEM_06157 [Clostridium hylemonae DSM 15053] Length = 329 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 22/216 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++I ++ ++ HA + GE+G GK L +A +L Sbjct: 7 VVGHKNIIDYIRSAVQEDKVSHAYILNGEKGAGKKMLATLFATTLL---------CEKAG 57 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 PDPC+ +Q S D + +++ P T I+VD+IR ++ + + G Sbjct: 58 PDPCNECHSCRQAESGNHPDIIRVTHE-KPNT------ISVDDIREQVNGTIMIKPYQGP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +I D M+ A NALLK++EEPP+ + +L++ + T+L TI SRC+ +K ++ Sbjct: 111 YKIYIIPQADMMSVQAQNALLKTIEEPPEYAVIMLLTENADTLLPTIASRCVMLKLRNIK 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + K L E +++ D K D A G++ RAI Sbjct: 171 DTLIKKYLMETMEV--PDYKADMCTAFAQGNMGRAI 204 >gi|239623108|ref|ZP_04666139.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522475|gb|EEQ62341.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 344 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I++ +G++ HA + GE G+G+ +L +A +L Sbjct: 22 ILGHEQIKEHFRNAVQTGKISHAYILSGEAGMGRKSLANAFALELLCEKGL--------- 72 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 PDPC KQ+ S D +Y+++ P + I VD+IR +I + + + Y Sbjct: 73 PDPCMACHACKQVLSGNHPDLIYVTHE-KPAS------IGVDDIREQINDTIMVRPYSSY 125 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ ++D + M A NALLK++EEPP + +L++ L TI SRC+ +K L Sbjct: 126 YKIYIVDEAEKMTVQAQNALLKTIEEPPSYAVILLLTTNQDAFLPTILSRCVQLKLKPLR 185 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + + L Q + +S+ D A G++ +AI + Sbjct: 186 DEVVREYLVQ-SLGVEESQADIYAAFARGNLGKAIHL 221 >gi|225010337|ref|ZP_03700809.1| DNA polymerase III subunit delta' [Flavobacteria bacterium MS024-3C] gi|225005816|gb|EEG43766.1| DNA polymerase III subunit delta' [Flavobacteria bacterium MS024-3C] Length = 385 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 113/255 (44%), Gaps = 40/255 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-----------------G 56 + G E I+ L S R+ HA LF G +G G + A G Sbjct: 6 VLGQEGIKSRLQTAIDSNRLAHAQLFVGAEGSGTLPMALALAREVLCGAENLTEEQKRTG 65 Query: 57 HV----LQNPDF------------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN 100 H+ L +PD P+ P F++ L D+ L Sbjct: 66 HLKMDHLNHPDLHFVYPVAASGLAKTKPISDHYAVPWRAFIQTQVYGNLFDWYQLM---- 121 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 T K + I+V+E R + LSL + G ++V++I ++ MN AAN +LK LEEPP+K Sbjct: 122 -GTEKKQGNISVEEARDLSQKLSLKSYEGGYKVMVIWGIEKMNTAAANKILKLLEEPPEK 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LFILI+ +++TI SRC F L E ++ K L + ++K+ + I A G+ Sbjct: 181 TLFILIAEEEEQLIATITSRCQITYFKKLQEKDIIKGLLAEGAVEQNAKQ--IAIMAEGN 238 Query: 221 VARAIKILHYDCDKI 235 +A+ + D +++ Sbjct: 239 YNKALDLFRQDSEEL 253 >gi|309390266|gb|ADO78146.1| DNA polymerase III, subunits gamma and tau [Halanaerobium praevalens DSM 2228] Length = 661 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 20/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G + +++ L + R+ HA LF G +G GK + +A + NP Sbjct: 8 RKYRPENFNDLIGQDQVKQTLKNALKNDRVAHAYLFAGPRGTGKTSAAKVFAKSLNCANP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P CN C K ++L D + + + N +DEIR +R + Sbjct: 68 TADFEPCGECNS--CQRIEK---GNSL-DVIEIDAASNR---------GIDEIRELREKV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V + + A NALLK+LEEPP V+FIL + +++TI SRC Sbjct: 113 KFYPGEGKYKVYIIDEVHMLTKGAFNALLKTLEEPPDSVVFILATTEPHKVITTIISRCQ 172 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKIL 228 F+ L+ NL K L + + G++ +++ + I +A G + AI +L Sbjct: 173 RFDFSLLTLTNLKKRLAYIAQAEGYEIEKEALDILARSARGGMRDAISLL 222 >gi|116626371|ref|YP_828527.1| DNA polymerase III subunit delta' [Candidatus Solibacter usitatus Ellin6076] gi|116229533|gb|ABJ88242.1| DNA polymerase III, delta prime subunit [Candidatus Solibacter usitatus Ellin6076] Length = 342 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 35/239 (14%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF------- 64 + +G+ + + L Q R+ LLF G +G+GKATL R +L +P+ Sbjct: 3 ENFWGNTAVTEALEQMIAQQRVSQTLLFSGPEGVGKATLARRLGARLLAHPELIERDDLA 62 Query: 65 -----------SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 K N DP Q A+H DF+ P G R I++ Sbjct: 63 LPENLETIATREKWTAEKRNEDPL-----QFATHP--DFVTF-----PPDGPLRQ-ISIP 109 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 + RR++ + G R+ +ID VD N AAN+LLK+LEEPP ++ I+ + + + Sbjct: 110 QTRRLKDAAQYLPHKGSRRIFLIDHVDRANDQAANSLLKTLEEPPDHLILIMTAQNAYDL 169 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG-SVARAIKILHYD 231 L TIRSR + F L+ + +A +K G D + +AA +A ++ + YD Sbjct: 170 LPTIRSRAVPFYFAPLAPAEM-RAF--VKARGLDQPERRIALAAGSPGIAMSLDLEAYD 225 >gi|70729186|ref|YP_258922.1| DNA polymerase III subunit delta' [Pseudomonas fluorescens Pf-5] gi|68343485|gb|AAY91091.1| DNA polymerase III, delta' subunit [Pseudomonas fluorescens Pf-5] Length = 328 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G GIGK L R +L Q P+ A C S + S Sbjct: 16 AGRTQHAHAYLLHGPAGIGKRALAERLMARLLCQRPEGLDA-CGQCK----SCLLLLAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++I+PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KAIKVDQVRELVSFVVQTAQLGGRKVVLIEPVESMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L TI+SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTIKSRCV 158 >gi|325144193|gb|EGC66500.1| DNA polymerase III, delta' subunit [Neisseria meningitidis M01-240013] Length = 325 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 23/190 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP-CSPFVKQMASHAL 89 R +A LF G++ GK T R+A L +C P P C P + M+ H Sbjct: 19 RRPNAWLFAGKKDTGKTTFA-RFAAKAL-----------LCETPAPGCKPCGECMSCHLF 66 Query: 90 ----HDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 H Y L+ ++ R + I +D +R+I + LT+ G RV++I P + MN Sbjct: 67 GQGSHPDFYEITPLSDESENGRKLLQIKIDAVRKIIDNVYLTSVRGGLRVVLIHPAESMN 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AAN+LLK LEEPP +V+F+L+SHA+ +L TI+SRC + + S +AL L+ Sbjct: 127 VQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHE---EALAYLRD 183 Query: 204 MGWDSKRDFV 213 G +F+ Sbjct: 184 RGVAEPEEFL 193 >gi|320333407|ref|YP_004170118.1| DNA polymerase III subunits gamma and tau [Deinococcus maricopensis DSM 21211] gi|319754696|gb|ADV66453.1| DNA polymerase III, subunits gamma and tau [Deinococcus maricopensis DSM 21211] Length = 772 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 22/194 (11%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSK 66 P++ + G E ++ L +GR+ HA LF G +G+GK T A PD Sbjct: 10 PIHWDEVVGQEHVKDVLRAALEAGRVGHAYLFSGPRGVGKTTTARLIAMTANCTGPD--- 66 Query: 67 APVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P PC P ++ + + D L + + N +VD++R +R + L Sbjct: 67 -------PKPCGTCPSCLEVRAGSHPDVLEIDAASN---------NSVDDVRELREKVGL 110 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 A G ++ ++D M+R A NALLK+LEEPP V+FIL + +L TI SRC Sbjct: 111 AAMRGGKKIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKVLPTIMSRCQHY 170 Query: 185 KFNSLSENNLYKAL 198 +F L++ + L Sbjct: 171 RFRRLTDTEIAGKL 184 >gi|289422833|ref|ZP_06424666.1| DNA polymerase III, delta prime subunit [Peptostreptococcus anaerobius 653-L] gi|289156743|gb|EFD05375.1| DNA polymerase III, delta prime subunit [Peptostreptococcus anaerobius 653-L] Length = 314 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 38/244 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + ++G E ++K L S RM +A +F G G+GK + ++ +L Sbjct: 3 EGIYGQEAVKKRLKNLIESDRMSNAYIFSGPSGVGKFLVAKEFSRQLLG----------- 51 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PD SP DF + N + I +D+IR ++ +S+ N G + Sbjct: 52 ISPDN-SP-----------DFKLIEAKKNESS------IKIDQIRNLKADISIKPN-GKY 92 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID + M A NALLK+LEEP + IL++ +L TIRSRCL ++F+ L Sbjct: 93 KIYIIDEAEKMTDQAQNALLKTLEEPSSYGIIILVTKNEQALLETIRSRCLDVRFSPLMI 152 Query: 192 NNLYKALEQLKIMGWDSKRDFVK-IAAYGSVARAIKILH----YDCDKIISSYIDLIHIP 246 +++ K L G D R V I + GS + AI I D K++ Y+ L + Sbjct: 153 DDIQKILVD---KGIDHDRVAVSAIFSRGSASLAIDIAQRQEFSDMRKLVEDYLILSLVD 209 Query: 247 RQEY 250 ++ Y Sbjct: 210 KKSY 213 >gi|166033094|ref|ZP_02235923.1| hypothetical protein DORFOR_02816 [Dorea formicigenerans ATCC 27755] gi|166027451|gb|EDR46208.1| hypothetical protein DORFOR_02816 [Dorea formicigenerans ATCC 27755] Length = 329 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 22/218 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH D+ ++L R+ A + GE+G GK L +A +L Sbjct: 7 VVGHRDVIQYLQNAVAENRVSQAYIVNGERGTGKKMLAKLFAMALLCEEH---------G 57 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 P+PC+ Q S+ D +++++ K G I VD++R +I +++ G Sbjct: 58 PEPCNKCHSCVQAESNNHPDIIWVTHE---KPGS----IGVDDVRTQINNTVAIKPYQGP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +I D M A NALLK++EEPPQ +FIL++ + +L TI SRC+ +K + Sbjct: 111 YKVYIIPEADIMTVQAQNALLKTIEEPPQYAVFILLTENADVLLPTINSRCVMLKLRYIK 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + K L E++++ D K + A G++ +AIK+ Sbjct: 171 DALIKKYLMERMEVP--DYKAEVCAAFAQGNLGKAIKL 206 >gi|257466568|ref|ZP_05630879.1| DNA polymerase III subunits gamma and tau [Fusobacterium gonidiaformans ATCC 25563] gi|315917723|ref|ZP_07913963.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC 25563] gi|313691598|gb|EFS28433.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC 25563] Length = 478 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 20/231 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V NP Sbjct: 7 RKYRPASFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSVNCLNP 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +C + C F + D + + + N +DEIR ++ + Sbjct: 67 KEDGEACGVC--ENCLSF----QEGSFLDLIEIDAASNR---------GIDEIRLLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEPDKILPTIISRCQ 171 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +LS N L L Q + + ++ + A+ GS+ AI IL Sbjct: 172 RYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILE 222 >gi|229816118|ref|ZP_04446433.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM 13280] gi|229808302|gb|EEP44089.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM 13280] Length = 451 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 12/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QN 61 R + P+ + + G + I L GR+ HA LF G +G GK T+ A +L + Sbjct: 6 RKYRPLTFESVVGQQHIVSTLEHAVAEGRLSHAYLFCGPRGTGKTTMARILAKALLCEKA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 A CNPD P +A D L + +TG VD +R I Sbjct: 66 EGARAAGATGCNPDGTCPECTAIAEGTHPDVYELDAA--SRTG-------VDNVREEIIN 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID V + A NALLK+LEEPP V+F+L + IL TI SR Sbjct: 117 SVSFAPVRGAYKVYIIDEVHMLTTQAFNALLKTLEEPPSHVIFVLCTTDPQKILETILSR 176 Query: 181 CLSIKFNSLSENNLYKAL 198 C F+ +S +++ L Sbjct: 177 CQRFDFHRISNDDIIGRL 194 >gi|168705270|ref|ZP_02737547.1| DNA polymerase III, delta prime subunit [Gemmata obscuriglobus UQM 2246] Length = 338 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 34/321 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRM 71 R+ G + +GR+ H+ L G G+GK A L ++P P ++ Sbjct: 5 RIRGQHAPRNTFAAALEAGRLAHSYLLVGPDGVGKRQFARELAKAFLCEHP-----PAKL 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C P Q+ D L+L +T + + + VDE+R ++L G Sbjct: 60 TACDRC-PACAQVNVGTHPDLLFL------RTPEDKHELPVDEMRAFCAQIALKPTRGPR 112 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +++ D N ++AN+ LK+LEEPPQ L +LI + LSTI SRC ++F LS Sbjct: 113 KIGIVEDADDFNASSANSFLKTLEEPPQGALLLLIGTSIDRQLSTILSRCQIVRFAPLSP 172 Query: 192 NNLYKALEQLKIMGWDS--KRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 +L L + G D KRD + GSV RA+ + ++ ++ + PR Sbjct: 173 ADLKAVLAE---QGIDDPVKRDRLAKLGAGSVTRALALDDDSIWQVRQKLLEGLMSPRPP 229 Query: 250 YALQKMQQIADELL---------SQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 + QQ+AD + Q++ +++F++ E ++A +L + E D Sbjct: 230 F-----QQLADVWARFNEEAGKETAPQRLRTSLVLQFLI-EAVQNALKLSLGAAVPELDA 283 Query: 301 I-AQIYFSLVKRVHAFSMYNL 320 A + + R+ A + L Sbjct: 284 AEAPLLRAFADRIGAAGLMEL 304 >gi|257463125|ref|ZP_05627526.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D12] gi|317060721|ref|ZP_07925206.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12] gi|313686397|gb|EFS23232.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12] Length = 468 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 28/284 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V P Sbjct: 7 RKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSVNCLEP 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +C + C+ F + D + + + N +DEIR ++ + Sbjct: 67 KEDGEACGVC--ENCTSF----QEGSFLDLVEIDAASNR---------GIDEIRLLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEPDKILPTIISRCQ 171 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F +LS N L L + + + ++ + A+ GS+ AI +L I+SS Sbjct: 172 RYDFKTLSLQDMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLER---LIVSS 228 Query: 239 YIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 I + E L QKM+Q LL +++K L E Sbjct: 229 SERKISLEESEKILGMTPIQKMEQFLHCLLQEEKKTILRELDEL 272 >gi|257469136|ref|ZP_05633230.1| DNA polymerase III subunits gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|317063383|ref|ZP_07927868.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|313689059|gb|EFS25894.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] Length = 484 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 32/287 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + + G ++I K L +G+ HA LF G +G+GK T+ A V L+N Sbjct: 7 RKYRPKNFEEIAGQKEIVKTLKASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVNCLEN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + C + + D + + + N +DEIR+++ Sbjct: 67 -GITDEPCNKC--ENCL----SINDGSFMDMIEIDAASNR---------GIDEIRQLKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SRC Sbjct: 111 INYQPSKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +LS + + L E + D D + + GS+ A IL ++++ Sbjct: 171 QRYDFKTLSPAEMKEKLGEISENEGVSVPDDVLDLIYENSGGSMRDATSIL----ERLMI 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICK 284 + +D +E L+K +++ + K D + E KE+ K Sbjct: 227 TCLD------EEITLEKCEKVLGVTPVKKMKDFLDNVTEKKYKELVK 267 >gi|239998538|ref|ZP_04718462.1| DNA polymerase III subunit delta' [Neisseria gonorrhoeae 35/02] gi|268594397|ref|ZP_06128564.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02] gi|268547786|gb|EEZ43204.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02] gi|317163814|gb|ADV07355.1| DNA polymerase III subunit delta'''' [Neisseria gonorrhoeae TCDC-NG08107] Length = 325 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 22/173 (12%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPD 75 H++ + +++++ S +A LF G++G GK R+A L +C P Sbjct: 6 HQEQWRQIAEHWTS--RPNAWLFVGKKGTGKTAFA-RFAAKAL-----------LCETPA 51 Query: 76 P-CSPFVKQMASHAL----HDFLYLSYSL--NPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P C P + M+ H H Y L P+ G+ I +D +R I + LT+ Sbjct: 52 PGCKPCGECMSCHLFGRGSHPDFYEITPLADEPENGRKLLRIKIDAVREIIDNVYLTSVR 111 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RVI+I P + MN AAN+LLK LEEPP +V+F+L+SH + +L TI+SRC Sbjct: 112 GGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHVADKVLPTIKSRC 164 >gi|91201430|emb|CAJ74490.1| similar to DNA polymerase III subunit gamma/tau [Candidatus Kuenenia stuttgartiensis] Length = 558 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 23/228 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R + P + G I K L + R+ HA LF G +G+GK + A + Sbjct: 5 VLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNC 64 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P +CN + ++ + D L + + N +DEIR I Sbjct: 65 VNGP--TDTPCNVCN------ICQSISEGSDIDVLEIDGASNR---------GIDEIRNI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +R+ +ID V + R A NALLK+LEEPP V FI + A+ + T++ Sbjct: 108 RQNVGFAPSRARYRIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQ 167 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 SRC F ++S N++ K L L+I + K+ ++ AA ++A+ K Sbjct: 168 SRCQRFDFKNISVNDIEKHL--LEICKTEGKQ--IESAALHTIAKYAK 211 >gi|52783877|ref|YP_089706.1| DNA polymerase III subunits gamma and tau [Bacillus licheniformis ATCC 14580] gi|163119173|ref|YP_077305.2| DNA polymerase III subunits gamma and tau [Bacillus licheniformis ATCC 14580] gi|319648542|ref|ZP_08002757.1| DnaX protein [Bacillus sp. BT1B_CT2] gi|52346379|gb|AAU39013.1| DnaX [Bacillus licheniformis ATCC 14580] gi|145902676|gb|AAU21667.2| DNA polymerase III (gamma and tau subunits) [Bacillus licheniformis ATCC 14580] gi|317389390|gb|EFV70202.1| DnaX protein [Bacillus sp. BT1B_CT2] Length = 566 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAV----N 63 Query: 64 FSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +APV CN CS K + + ++ D + + + N VDEIR IR + Sbjct: 64 CERAPVSEPCNE--CSA-CKGITNGSISDVIEIDAASNN---------GVDEIRDIRDKV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 112 KFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ 171 Query: 183 SIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + EQLK+ D D + AA G + A+ +L Sbjct: 172 RFDFKRITSQAIVGRMKKIVEAEQLKVQ--DGALDIIASAADGGMRDALSLL 221 >gi|289667731|ref|ZP_06488806.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 355 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNL 194 CL L E+ + Sbjct: 170 CLQFNLKRLDEDQI 183 >gi|95930675|ref|ZP_01313409.1| DNA polymerase III, delta prime subunit [Desulfuromonas acetoxidans DSM 684] gi|95133327|gb|EAT14992.1| DNA polymerase III, delta prime subunit [Desulfuromonas acetoxidans DSM 684] Length = 326 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 17/187 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE +K L Q + + RM HA LF G +GIGK + + C Sbjct: 6 IIGHERQKKLLRQAWNNQRMAHAYLFTGAEGIGKRLMATALVRLIFCEHQTGCGTCAGC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + H H L++ L P+ + I +D IR ++ L R+ Sbjct: 65 ---------RRIDHNNHPDLHI---LEPEG----SFIKIDAIRELQRELQHPPLEAPRRI 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID D MN A NALLK+LEEP V+ ILIS +L TIRSRC + F L + Sbjct: 109 CLIDGADKMNPAAGNALLKTLEEPRHDVMLILISAHPEAVLETIRSRCQQLPFARLDQAM 168 Query: 194 LYKALEQ 200 + K L+Q Sbjct: 169 IAKVLKQ 175 >gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida DSM 20544] gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida DSM 20544] Length = 631 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G E I + L+ SG + HA LF G +G GK + A + + Sbjct: 8 RKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAKAL----N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P+PC +++A + D + + N +DEIR +R Sbjct: 64 CEHGP----TPEPCGQCEQCRKIADGSSMDVFEIDAASN---------RGIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + + + TI+SRC Sbjct: 111 VKFAPVDGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ E+ L ++K+ D + I A G + A+ IL Sbjct: 171 QRYDFKRITVEEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSIL 221 >gi|289662384|ref|ZP_06483965.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 365 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|260655563|ref|ZP_05861051.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi E3_33 E1] gi|260630011|gb|EEX48205.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi E3_33 E1] Length = 648 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +++ SGR+ HA LF G +G GK T+ A V Sbjct: 7 RRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAVNCTAR 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + A+ D SL+ + TVDE+R ++ + Sbjct: 67 NGAEPCGQCQ-----------SCLAIRD----GRSLDVVEIDGASNNTVDEVRELKANVG 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L + G W+V +ID V ++ +A NALLK+LEEPP++V+FIL + + +TIRSRC Sbjct: 112 LASFGGNWKVYIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQH 171 Query: 184 IKFNSLSENNLYKALEQL 201 I F+ LS ++ L+ + Sbjct: 172 IPFHGLSVPDIVSQLKDV 189 >gi|319789391|ref|YP_004151024.1| DNA polymerase III, delta prime subunit [Thermovibrio ammonificans HB-1] gi|317113893|gb|ADU96383.1| DNA polymerase III, delta prime subunit [Thermovibrio ammonificans HB-1] Length = 274 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 TV+E+R + +L ++G + +ID D M AANALLK+LEEPP+ IL++++ Sbjct: 66 TVEEVRELSSWLFTKPSSGRGKGAVIDMADRMRSEAANALLKTLEEPPEYGYLILVANSE 125 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +L TIRSRC +F+ L + ++ AL++L G ++ R VK+A GSV A+++ Sbjct: 126 VAVLPTIRSRCKVFRFSRLPDTSVEYALKRL---GVEADRRVVKLAG-GSVGLALRLSES 181 Query: 231 DCDKIISSYIDLIHIPR 247 + +++ +++ + P+ Sbjct: 182 NVPQLVEAFLKAVKGPK 198 >gi|254785817|ref|YP_003073246.1| DNA polymerase III subunit delta prime [Teredinibacter turnerae T7901] gi|237687494|gb|ACR14758.1| DNA polymerase III subunit delta prime [Teredinibacter turnerae T7901] Length = 339 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G + HA+L +G GIG +L A ++ + +A C + + SH Sbjct: 25 GHLPHAILLQGVAGIGTESLARAMAEFLMCSSPVEQAACGQCK------VCRLLQSHNHP 78 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D LS P+ VI VD++R++ F++ T+ G ++++I+P + MN AANAL Sbjct: 79 DLFLLS----PEEKS--VVIKVDQVRQLTEFVAKTSQQGGRKLVIIEPAEAMNIAAANAL 132 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 LK EEP +FIL+ H + +L TIRSRC ++L A+ L+ MG +S Sbjct: 133 LKCFEEPSGDTVFILVCHHANRLLPTIRSRC---ACHTLPVPERALAVSWLETMGVES 187 >gi|86144113|ref|ZP_01062450.1| putative DNA polymerase III delta prime subunit [Leeuwenhoekiella blandensis MED217] gi|85829375|gb|EAQ47840.1| putative DNA polymerase III delta prime subunit [Leeuwenhoekiella blandensis MED217] Length = 382 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 117/258 (45%), Gaps = 42/258 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---------- 61 Q + G I+K L+ GR+ HA LF G G G YA +++ N Sbjct: 4 QSILGQNFIKKHLTTSVDRGRVAHAQLFVGASGSGVLPCALAYAQYLICNNTEGENTGGS 63 Query: 62 ------------PD----FSKAPVRMCNPDPCS--------PFVKQMASHALHDFLYLSY 97 PD + AP P S F+++ +L+D+ + Sbjct: 64 AACNLKFDHLAHPDLHFAYPVAPNDTVKSHPVSDNFAKEWRAFIQENPYGSLYDW-HRHI 122 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + K GK I VDE + I LSL + G ++V++I D MN A+N LLK +EEP Sbjct: 123 GIEKKQGK----IGVDEAQDIVKKLSLKSYEGGFKVMIIWMADKMNNAASNKLLKLIEEP 178 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIA 216 PQK +F+LI+ I+ TI+SRC ++F L+ L AL + ++K+ + I Sbjct: 179 PQKTIFLLIAENEDQIIDTIKSRCQVLRFPPLAAEALENALINEHNCDAAEAKK--LAIK 236 Query: 217 AYGSVARAIKILHYDCDK 234 A+G A+ +L + D+ Sbjct: 237 AHGDYNLALHLLDHSSDE 254 >gi|284048007|ref|YP_003398346.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952228|gb|ADB47031.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 356 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 32/251 (12%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE + FL R +LLF G +GIGK + +A L D P+ Sbjct: 14 ESIIGHETNKIFLKNMLTGERQTPSLLFCGPEGIGKKKMARAFARSFLCLED----PLVP 69 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C+ C + M + + DF+ + GK RT I VD I ++ +L + Sbjct: 70 CHCRSC----QAMDNGSHQDFIQVEPG-----GKSRT-IGVDAIHQLAASAALGPVLSPF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID M A N+LLK LEEPP LFIL++ +L TIRSR + ++F+ LS Sbjct: 120 KVCLIDEAHTMREEAQNSLLKLLEEPPDYWLFILVADDREKLLPTIRSRVMELRFDPLSM 179 Query: 192 NNLYKALEQLKIMG------------------WDSKRDFVKIAAYGSVARAIKILHYDCD 233 + + LE +++ W + + A GS +A++ D Sbjct: 180 EDTERVLETIRLQENDRPESLKDAELSQAEARWREQLPILARLAGGSAGKALEWFRLDAL 239 Query: 234 KIISSYIDLIH 244 + +DL+ Sbjct: 240 TLREEILDLVE 250 >gi|257421629|ref|ZP_05598619.1| DNA polymerase III subunit delta [Enterococcus faecalis X98] gi|257163453|gb|EEU93413.1| DNA polymerase III subunit delta [Enterococcus faecalis X98] gi|315155622|gb|EFT99638.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0043] Length = 316 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 81/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +LKE + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLKESVATQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|325927129|ref|ZP_08188395.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans 91-118] gi|325542497|gb|EGD13973.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans 91-118] Length = 420 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|260588966|ref|ZP_05854879.1| ATPase [Blautia hansenii DSM 20583] gi|331083312|ref|ZP_08332425.1| hypothetical protein HMPREF0992_01349 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540745|gb|EEX21314.1| ATPase [Blautia hansenii DSM 20583] gi|330404393|gb|EGG83938.1| hypothetical protein HMPREF0992_01349 [Lachnospiraceae bacterium 6_1_63FAA] Length = 329 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 20/219 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++ GHE++ K L ++ H+ +F GE+G GK L +A LQ P Sbjct: 5 EKVLGHEEVVKHLKNAAAMDKVSHSYIFAGEKGSGKKLLAKLFA-MTLQCEKHGDEPCLQ 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 C+ K+ + D +Y+S+ P + I +++IR ++ +S+ TG Sbjct: 64 CSS------CKKAMNRNHPDIIYISHE-KPNS------IGIEDIREQLISDVSIKPYTGP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ ++D + M A NALLK++EEPP + +L+ + T+L TI SRC+++ F + Sbjct: 111 YKIYIVDEAEKMTVQAQNALLKTIEEPPAYAVILLLVNNGSTLLPTIASRCVTLNFKPVR 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIA-AYGSVARAIKI 227 + + K L E+L + + ++ V +A A G+V +A +I Sbjct: 171 DEVIKKYLMEELHVPDYQAE---VSVAFAQGNVGKAKQI 206 >gi|326802969|ref|YP_004320787.1| DNA polymerase III, delta' subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326651710|gb|AEA01893.1| DNA polymerase III, delta' subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 345 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + + + Q +GR+ HA LFEG G G+A + A + + + P C D C Sbjct: 14 LAQLMRQVVQNGRLAHAYLFEGNAGSGQADMAIFLAAALFCSQE--DKPCGQC--DHCQR 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ H+ D +L+ N I +D+IR +++ LSLT G +V +I+ Sbjct: 70 VIR--GDHS--DVEWLTKDANS--------IKIDQIRELKHNLSLTGLEGRVKVFVIEAA 117 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + M AAN+LLK LEEP Q V L+++ IL T++SRC I F SL+ Sbjct: 118 ETMTVQAANSLLKFLEEPHQDVYIFLLTNNREAILPTVQSRCQVIHFPSLA 168 >gi|330502602|ref|YP_004379471.1| DNA polymerase III subunit delta' [Pseudomonas mendocina NK-01] gi|328916888|gb|AEB57719.1| DNA polymerase III subunit delta' [Pseudomonas mendocina NK-01] Length = 330 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 24/205 (11%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 +GR HA L G GIGK L R +L AP + D C + H Sbjct: 16 AGRSQHAHAYLLHGPTGIGKRALAERLMARLL-----CLAPNGL---DACGSC---KSCH 64 Query: 88 ALHDFLYL-SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 L + ++ L P+ I VD++R + F+ TA G +V++++P + MN NA Sbjct: 65 LLAAGTHPDNFVLEPEEAD--KPIKVDQVRELVDFVVQTAQLGGRKVVLLEPAEAMNLNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS----IKFNSLSENNLYKALEQLK 202 ANALLKSLEEP + +LISH +L TI+SRC+ + ++S L +AL +L Sbjct: 123 ANALLKSLEEPSGNTVLLLISHQPSRLLPTIKSRCVQQACPLPSEAMSLAWLAQALPEL- 181 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKI 227 G D + D + +AA GS A+++ Sbjct: 182 --GDDERSDLLTLAA-GSPLAAVRL 203 >gi|160893580|ref|ZP_02074364.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50] gi|156864565|gb|EDO57996.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50] Length = 575 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 21/230 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L + R+ HA LF G +G GK ++ +A V ++P Sbjct: 5 RKWRPDTFEEVKGQDHVVTTLKNQIINNRIGHAFLFCGTRGTGKTSIAKLFAKAVNCEHP 64 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 N PC+ A A+ D S+N + VD IR+IR + Sbjct: 65 ---------INGSPCNECA---ACRAIAD----GSSMNVIEIDAASNNGVDNIRQIREEV 108 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + G ++V +ID V + + A NALLK+LEEPP V+FIL + S I TI SRC Sbjct: 109 QYSPSEGKYKVYIIDEVHMLTQGAFNALLKTLEEPPAYVIFILATTESHKIPITISSRCQ 168 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F +S + L + L + +I D++ AA GS+ A+ IL Sbjct: 169 KYEFRRISVETISDRLMELLGREQIEAEKKAVDYIAKAADGSMRDALSIL 218 >gi|150021275|ref|YP_001306629.1| DNA polymerase III, subunits gamma and tau [Thermosipho melanesiensis BI429] gi|149793796|gb|ABR31244.1| DNA polymerase III, subunits gamma and tau [Thermosipho melanesiensis BI429] Length = 460 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 17/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G ++K + + HA +F G +G GK T+ A + +NP Sbjct: 6 RKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCENP 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P MCN C K D L L + N +DEIR+IR + Sbjct: 66 Q-EIEPCNMCNA--CISIDK----GNFMDVLELDAASNR---------GIDEIRKIRETV 109 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID + + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 110 NYHTAQGKYKVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQ 169 Query: 183 SIKFNSLSENNLYKALE 199 I F ++S ++ K LE Sbjct: 170 VIDFKNISNKDIIKRLE 186 >gi|326789152|ref|YP_004306973.1| DNA polymerase III delta prime subunit [Clostridium lentocellum DSM 5427] gi|326539916|gb|ADZ81775.1| DNA polymerase III, delta prime subunit [Clostridium lentocellum DSM 5427] Length = 339 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 17/219 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G+ED +++ + + H+ +FEG G+GK T + A +L + + Sbjct: 15 QDIIGNEDAKEYFIKALTKNHLSHSYIFEGPYGVGKKTFARKLAKAILCE---QRKNDKA 71 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGY 130 CN V ++ +H D + + K VI VD IR I + + Sbjct: 72 CNECQSCHMV-EVGTHP--DIITIE--------KDTKVIKVDNIRENIVREMEIKPYQAE 120 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I+++ D +N NA+LK++EEPP + IL+ ++L TI+SRC++++FN LS Sbjct: 121 HKIIIVNAADTINVQGQNAMLKTIEEPPSYGIVILVCENLASMLPTIKSRCITVRFNPLS 180 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + LE+ I G + K + K++ GS+ IL Sbjct: 181 KEKMSSYLERKGISG-EEKEVYTKLSE-GSIGVINDILQ 217 >gi|167768113|ref|ZP_02440166.1| hypothetical protein CLOSS21_02668 [Clostridium sp. SS2/1] gi|167709637|gb|EDS20216.1| hypothetical protein CLOSS21_02668 [Clostridium sp. SS2/1] gi|291559964|emb|CBL38764.1| DNA polymerase III, delta' subunit [butyrate-producing bacterium SSC/2] Length = 330 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 34/231 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD + GH+ I + +G++ HA L GE G GK + A +L Sbjct: 2 KSFDAI-----IGHKKIISHFEEAIKTGKVSHAYLLSGEDGSGKMMIAKAVAKALL---- 52 Query: 64 FSKAPVRMC-NPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IR 119 C + D C KQ+ S D +Y+++ + I VD+IR+ I Sbjct: 53 --------CKHKDGCGECAACKQVDSLNHPDVIYITHE--------KYEIRVDDIRKGIN 96 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + +G +++ +ID D MN A NALLK+LEEPP + +L+++ +L TI S Sbjct: 97 ETIDIKPYSGDYKIYIIDDADRMNAGAQNALLKTLEEPPAYAVILLLTNNKDRLLDTILS 156 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKIL 228 RC+S+ S+ E+ + + LK S D AA+ G++ RA+ +L Sbjct: 157 RCVSMTLGSVRESEIE---DYLKANTGASHADIAFAAAFSLGNIGRALHVL 204 >gi|317499446|ref|ZP_07957713.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893318|gb|EFV15533.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 330 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 34/231 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD + GH+ I + +G++ HA L GE G GK + A +L Sbjct: 2 KSFDAI-----IGHKKIISHFEEAIKTGKVSHAYLLSGEDGSGKMMIAKAVAKALL---- 52 Query: 64 FSKAPVRMC-NPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IR 119 C + D C KQ+ S D +Y+++ + I VD+IR+ I Sbjct: 53 --------CEHKDGCGECAACKQVDSLNHPDVIYITHE--------KYEIRVDDIRKGIN 96 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + +G +++ +ID D MN A NALLK+LEEPP + +L+++ +L TI S Sbjct: 97 ETIDIKPYSGDYKIYIIDDADRMNAGAQNALLKTLEEPPAYAVILLLTNNKDRLLDTILS 156 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKIL 228 RC+S+ S+ E+ + + LK S D AA+ G++ RA+ +L Sbjct: 157 RCVSMTLGSVRESEIE---DYLKANTGASHADIAFAAAFSLGNIGRALHVL 204 >gi|325919111|ref|ZP_08181170.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC 19865] gi|325550420|gb|EGD21215.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC 19865] Length = 689 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFSELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|284049060|ref|YP_003399399.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] Length = 671 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 151/342 (44%), Gaps = 47/342 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I+K L+ +GR+ HA LF G +G GK + R L + Sbjct: 8 RTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTA-RILAKAL---N 63 Query: 64 FSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 K P CN CS +++ D + + + N +DEIR++R + Sbjct: 64 CEKGPTAHPCN--QCS-NCREITEGTCGDVVEIDAASN---------RGIDEIRKLREQV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V + +A NALLK+LEEPP+ V+FIL + IL+TI SRC Sbjct: 112 YFAPTSCRYKVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQ 171 Query: 183 SIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + + + LE++ I + I A G + A+ +L D +++S Sbjct: 172 RFDFRRATVDEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLL--DQCSVMAS 229 Query: 239 YIDLIHIPRQEYAL---QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + + RQ L +K++++ + ++ A D L + L Sbjct: 230 PVTAETV-RQVLGLVGREKLRELVTRIGQKNLSGALDALGQL-----------------L 271 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRR-QMIFHLLSKAREC 336 E+ ++ QI L++ A +Y DR Q I+ L+ RE Sbjct: 272 EQGKEMEQILAELLEYFRALLLYQADREYQEIY--LTDTREA 311 >gi|160872710|ref|ZP_02062842.1| DNA polymerase III subunit delta' [Rickettsiella grylli] gi|159121509|gb|EDP46847.1| DNA polymerase III subunit delta' [Rickettsiella grylli] Length = 324 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HALLF G+ G+GK+ +A +L C + A A Sbjct: 25 GRLSHALLFAGQMGLGKSLFALHFAKTLL-----------------CKQPKQSRACQACR 67 Query: 91 DFLYLSYSLNP-----KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 D + ++ +P T K I +D+IR I L+ T+ Y ++I+I+P D + Sbjct: 68 DCILVAAGTHPDLSLLTTEKSTQGIKIDQIRDITDKLNHTSQATY-KIIVINPADSLLVA 126 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 A+ ALLKSLEEP + LFIL++ +L TIRSRC I+FN Sbjct: 127 ASQALLKSLEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFN 168 >gi|229825150|ref|ZP_04451219.1| hypothetical protein GCWU000182_00501 [Abiotrophia defectiva ATCC 49176] gi|229790522|gb|EEP26636.1| hypothetical protein GCWU000182_00501 [Abiotrophia defectiva ATCC 49176] Length = 330 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 27/228 (11%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 N + G E + +++ HA +FEGE+G+GK + +A +L Sbjct: 7 NTNILGRESLVEYMKTAASKEEFSHAYIFEGEKGMGKLFIAKEFAKMILS---------- 56 Query: 71 MCNPDPCSP---FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 C + KQ+ + D +Y+ P T I+V+EIR S Sbjct: 57 -CGKETDEERQIVYKQVDNGNSPDIIYIEPD-KP------TTISVEEIRTKLVGTSDIFP 108 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++V ++ + MN A NALLK++EEPP+ V+ IL+S +L TIRSRC+++ Sbjct: 109 YGKYKVYIVKEAEKMNEQAQNALLKTIEEPPEYVIIILLSANKNRLLPTIRSRCVTLDIK 168 Query: 188 SLSENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 ++ N + + L E ++ + + D + G+V RA++ Y CD+ Sbjct: 169 PIAANIIKEYLIENYGVVDYVA--DMAAKFSAGNVGRAVR---YACDE 211 >gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 628 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 46/327 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E I K L+ SGR+ HA LF G +G GK + R L + Sbjct: 8 RTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTA-RILAKAL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P PC+ +++ D + + + N +DEIR++R Sbjct: 64 CEKGPT----PHPCNTCDHCREITEGTSADVIEIDAASN---------RGIDEIRKLREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + +A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VHFAPVSSRYKVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ L K E I + I A G + A+ +L D I++ Sbjct: 171 QRFDFRRVTVDDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLL--DQCSIMA 228 Query: 238 SYIDLIHIPRQEYAL---QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 + + + RQ + M+ + +++ +D A D L + Sbjct: 229 NPVTAETV-RQVLGIAGRDTMRALVEKIGRRDLPAALDLLNQL----------------- 270 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLD 321 +++ + Q+ L++ + A +Y D Sbjct: 271 MDDGKDVTQVLTELLEYMRALLLYQAD 297 >gi|241758490|ref|ZP_04756609.1| DNA polymerase III subunit delta' [Neisseria flavescens SK114] gi|241321325|gb|EER57473.1| DNA polymerase III subunit delta' [Neisseria flavescens SK114] Length = 326 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 19/155 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G++ GK R+ L ++P P C C F + +H DF Sbjct: 22 NAWLFTGKENTGKTEFA-RFVAQALLCESPKSGHEPCGECAS--CHLFSQN--THP--DF 74 Query: 93 LYLSYSLNPK------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ TG+ I +D +R I + LTA G RV+++ P + MN A Sbjct: 75 ----YELTPEIPEGEATGRKLLQIKIDAVRDIVENIYLTAVRGGLRVVLVHPAESMNTQA 130 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AN LLK+LEEPPQ V+F+L++HA +L TI+SRC Sbjct: 131 ANGLLKALEEPPQHVVFLLVTHARDKLLPTIKSRC 165 >gi|254448202|ref|ZP_05061664.1| DNA polymerase III, delta prime subunit [gamma proteobacterium HTCC5015] gi|198262069|gb|EDY86352.1| DNA polymerase III, delta prime subunit [gamma proteobacterium HTCC5015] Length = 343 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSP-FVKQMASHA 88 GR+ HALL +G G+GK + A G + QN A V C C + + H Sbjct: 30 GRLPHALLLQGAAGVGKGLFARQLARGLLCQN----AAGVAACGQ--CQDCHLSAIGQHP 83 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ +++ K GK I VD+IR + LSL +++ +V +I P MN NAAN Sbjct: 84 --DWHEVTFE-RTKEGKLSREIRVDQIRALSDSLSLKSHSAGGKVAVIYPAHKMNVNAAN 140 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ++LK+LEEP +L++ A +L TIRSRC SI+F+ S + + L Sbjct: 141 SVLKTLEEPSADTFLLLVTDAPSRLLPTIRSRCQSIRFDVPSADQAEQWL 190 >gi|323487365|ref|ZP_08092664.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum WAL-14163] gi|323694200|ref|ZP_08108376.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323399326|gb|EGA91725.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum WAL-14163] gi|323501673|gb|EGB17559.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 536 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G + I K L SGR+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPVSFDEVKGQDHIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFAKAVNCESP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C+ +Q+AS A + + + + N V+ IR IR + Sbjct: 68 VDGSPCGECS------MCRQIASSASLNVVEIDAASNNG---------VENIRDIRDQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + L +L +I + +V AA GS+ A+ +L Sbjct: 173 YDFKRITIDTISARLHELTQAEQIDVEERALRYVAKAADGSMRDALSLL 221 >gi|319637904|ref|ZP_07992670.1| DNA polymerase III [Neisseria mucosa C102] gi|317401059|gb|EFV81714.1| DNA polymerase III [Neisseria mucosa C102] Length = 326 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G++ GK R+ L ++P P C C F + +H DF Sbjct: 22 NAWLFTGKENTGKTEFA-RFVAQALLCESPKSGHEPCGECAS--CHLFSQN--THP--DF 74 Query: 93 LYLSYSLNPK------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ TG+ I +D +R I + LTA G RV+++ P + MN A Sbjct: 75 ----YELTPEIPEGEATGRKLLQIKIDAVRDIVENIYLTAVRGGLRVVLVHPAESMNTQA 130 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 AN LLK+LEEPPQ V+F+L++HA +L TI+SRC + S + L Q Sbjct: 131 ANGLLKALEEPPQHVVFLLVTHARDKLLPTIKSRCRQMVLPSPTHEQAAAYLRQ 184 >gi|289432471|ref|YP_003462344.1| DNA polymerase III subunits gamma/tau [Dehalococcoides sp. GT] gi|288946191|gb|ADC73888.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. GT] Length = 570 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 31/282 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L SGR+ A LF G +G GK + G A V + Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 70 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K +PC+ P + + D + + + N TG VD+IR ++ Sbjct: 71 QGKG-------EPCNTCPMCLSITEGSSMDIIEIDAASN--TG-------VDDIRELKEK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 115 VQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F+ +S ++ + L ++ + G + + + +K+ +A GS +L +I + Sbjct: 175 QRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QIAT 230 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL 274 +Y I + + + AL ++++ +A+ +L +D K L Sbjct: 231 TYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTL 272 >gi|88810824|ref|ZP_01126081.1| DNA polymerase III, delta prime subunit [Nitrococcus mobilis Nb-231] gi|88792454|gb|EAR23564.1| DNA polymerase III, delta prime subunit [Nitrococcus mobilis Nb-231] Length = 357 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + L+ + GR+ HA+ G G+GK+ L R+A +L S C Sbjct: 12 HQPVWDRLAACHRRGRVPHAIAVVGSAGLGKSRLAIRFAQALLCASPRSDG--DGCGRCR 69 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C ++ SH H Y+++P++ + I +D+IRR+ FL ++ G +RV ++ Sbjct: 70 CC-HLQAAGSHPDH------YAVHPES-EPGGPIKIDQIRRLIEFLMRSSQYGGYRVTLV 121 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 DP D M AAN+LLK+LEEPP + IL++ + +T+RSRC ++ Sbjct: 122 DPADRMTLAAANSLLKTLEEPPAAAVLILVARQFSQLPATLRSRCRLVQLQ 172 >gi|255067907|ref|ZP_05319762.1| DNA polymerase III, delta' subunit [Neisseria sicca ATCC 29256] gi|255047789|gb|EET43253.1| DNA polymerase III, delta' subunit [Neisseria sicca ATCC 29256] Length = 325 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 135/301 (44%), Gaps = 37/301 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G++ GK R+ L ++P P +C C F++ SH DF Sbjct: 22 NAWLFTGKENTGKTAFA-RFVAQALLCESPREDHQPCGVCAS--CHLFLQN--SHP--DF 74 Query: 93 LYLSYSLNPK------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ G+ I +D +R I + LTA G RV+++ P + MN A Sbjct: 75 ----YELTPEIPEDGAVGRKLLQIKIDAVRDIVENIYLTAVRGGLRVVLVHPAESMNVQA 130 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 AN LLK+LEEPPQ V+F++++HA +L TI+SRC + + S + +AL L+ G Sbjct: 131 ANGLLKALEEPPQHVVFLMVTHARDKLLPTIKSRCRQMVLPAPSRD---EALAYLREEGV 187 Query: 207 DSKRDFVKIAAYGSV-ARAIKILHYDCDKIISSYIDLIHIPR------QEYALQKMQQIA 259 D + + + A A ++ D + + L+ PR A K +Q Sbjct: 188 DDAESLLAFHSGAPLFAHAPEM-----DDLREELLTLLAAPRLLTILDYAAAFDKHKQPL 242 Query: 260 DELLSQDQKIAFDF-LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + QK D L + + + A ALS + D + F+L R++A S Y Sbjct: 243 AVFIDWMQKWLLDVGLAQQQMPPLYYPDYAQALSQTASKTD--PRRLFALTGRLNALSPY 300 Query: 319 N 319 Sbjct: 301 G 301 >gi|315225488|ref|ZP_07867301.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] gi|314944586|gb|EFS96622.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] Length = 375 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 33/214 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPV 69 + + G++ I+ +L +GR+ HA LF +G G + YA +L NP Sbjct: 4 KNILGYDTIKNYLQASVEAGRIPHAQLFVAGEGQGALPMAIAYATLILSHDNPKAKAQCA 63 Query: 70 RMCNPD----------------PCSP--------FVKQMASHALHDFL-YLSYSLNPKTG 104 ++ +PD P S FVK+ +L D+L +L Sbjct: 64 QLAHPDLHFAFPTAINDKVKKDPISALFMDEWRAFVKEQPYGSLFDWLVFLGIE------ 117 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 K + I V+E + I L+L + G ++V++I + MN A+N LLK LEEP K +F+ Sbjct: 118 KKQANIGVNEAKEITNKLALKSFEGGYKVMIIWMAEKMNAEASNKLLKLLEEPADKTVFL 177 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 L+ +L TI+SRC ++F LSEN + +AL Sbjct: 178 LVVEDENALLDTIKSRCQILRFPPLSENAIKEAL 211 >gi|188992754|ref|YP_001904764.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. B100] gi|167734514|emb|CAP52724.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris] Length = 752 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 104 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 163 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 164 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 208 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 209 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 268 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 269 CLQFNLKRLDEDQIQGQMTRI 289 >gi|73748424|ref|YP_307663.1| putative DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. CBDB1] gi|73660140|emb|CAI82747.1| putative DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. CBDB1] Length = 570 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 31/282 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L SGR+ A LF G +G GK + G A V + Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 70 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K +PC+ P + + D + + + N TG VD+IR ++ Sbjct: 71 QGKG-------EPCNTCPMCLSITEGSSMDIIEIDAASN--TG-------VDDIRELKEK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 115 VQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F+ +S ++ + L ++ + G + + + +K+ +A GS +L +I + Sbjct: 175 QRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QIAT 230 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL 274 +Y I + + + AL ++++ +A+ +L +D K L Sbjct: 231 TYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTL 272 >gi|330985598|gb|EGH83701.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. lachrymans str. M301315] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|147669204|ref|YP_001214022.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. BAV1] gi|146270152|gb|ABQ17144.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. BAV1] Length = 570 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 31/282 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L SGR+ A LF G +G GK + G A V + Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 70 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K +PC+ P + + D + + + N TG VD+IR ++ Sbjct: 71 QGKG-------EPCNTCPMCLSITEGSSMDIIEIDAASN--TG-------VDDIRELKEK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 115 VQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F+ +S ++ + L ++ + G + + + +K+ +A GS +L +I + Sbjct: 175 QRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QIAT 230 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL 274 +Y I + + + AL ++++ +A+ +L +D K L Sbjct: 231 TYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTL 272 >gi|320327698|gb|EFW83706.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. glycinea str. race 4] gi|330877897|gb|EGH12046.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. glycinea str. race 4] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|148549000|ref|YP_001269102.1| DNA polymerase III subunit delta' [Pseudomonas putida F1] gi|148513058|gb|ABQ79918.1| DNA polymerase III, delta prime subunit [Pseudomonas putida F1] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + Q R HA L G QGIGK + R +L Q P A C S Sbjct: 9 QALWQQLAGRSRHAHAYLLHGPQGIGKRAMAERLMARLLCQQPQGLDA-CGACK----SC 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + + SH + + L P+ I VD++R + F+ TA G +V++I+PV Sbjct: 64 LLLKAGSHPDN------FVLEPEEAD--KPIKVDQVRELVAFVVQTAQLGGRKVVLIEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + MN NA+NALLKSLEEP + +L++H +L TI+SRC + Sbjct: 116 EAMNVNASNALLKSLEEPSGDTVLLLVTHQPSRLLPTIKSRCQQV 160 >gi|227824455|ref|ZP_03989287.1| DNA polymerase III delta' subunit [Acidaminococcus sp. D21] gi|226904954|gb|EEH90872.1| DNA polymerase III delta' subunit [Acidaminococcus sp. D21] Length = 326 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 13/190 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE + FL R ALLF G GIGK L + +A L D + C Sbjct: 5 ILGHEANKIFLGNMLQGERKTPALLFYGPDGIGKKKLAYEFARSFLCLDDPTHDD---CK 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C F + SH DF+Y+ + R I +++I+ + + ++V Sbjct: 62 CRSCRAFCGE--SHP--DFIYV------EGQGARHDILIEQIKEVEKKAVFSPVLSPYKV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID D M A+N+LLK LEEPP LFIL++ IL TIRSR ++I+F L Sbjct: 112 CLIDGADRMREEASNSLLKLLEEPPTYWLFILVASEISRILPTIRSRLMAIRFEPLHREK 171 Query: 194 LYKALEQLKI 203 + +E+L + Sbjct: 172 AVRVMEELSV 181 >gi|83320030|ref|YP_424007.1| DNA polymerase III gamma-tau subunits [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283916|gb|ABC01848.1| DNA polymerase III gamma-tau subunits [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 669 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 17/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 RA+ P + GH I++ L + R++HALLF G++G GK ++ +A V N Sbjct: 10 RAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTVNCLNL 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 SKA CN C K + L D + + + N VDEIR I+ + Sbjct: 70 TGSKA-CEQCNN--C----KLANENQLIDIIEIDAASNN---------GVDEIREIKNSV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 114 STLPINSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 174 IFNFTKIDKNSLKNRLQ 190 >gi|325918000|ref|ZP_08180164.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC 35937] gi|325535764|gb|EGD07596.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC 35937] Length = 399 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALTNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|289624542|ref|ZP_06457496.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649353|ref|ZP_06480696.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. aesculi str. 2250] gi|330869263|gb|EGH03972.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|220934997|ref|YP_002513896.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7] gi|219996307|gb|ACL72909.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7] Length = 321 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGK-ATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 ED + L GR+ HALL G GIGK A + P AP C D Sbjct: 9 EDAYRQLLGRLAGGRLPHALLLTGPVGIGKRALAESLALAALCTAPGVEGAPCGHC--DS 66 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C + + +H D ++ + +T I VD+IR + + L+ + G RV ++ Sbjct: 67 CRLY--RADTHP--DLTRVTIPED------KTQIVVDQIRELSETMGLSRSMGAHRVALL 116 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 P + MN NAAN+LLK+LEEPP++ L IL+S + +TIRSRC ++ Sbjct: 117 WPAEAMNPNAANSLLKTLEEPPERTLMILVSAEPSRLPATIRSRCQTL 164 >gi|26988692|ref|NP_744117.1| DNA polymerase III subunit delta' [Pseudomonas putida KT2440] gi|24983480|gb|AAN67581.1|AE016388_1 DNA polymerase III, delta prime subunit [Pseudomonas putida KT2440] gi|313499926|gb|ADR61292.1| HolB [Pseudomonas putida BIRD-1] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + Q R HA L G QGIGK + R +L Q P A C S Sbjct: 9 QALWQQLAGRSRHAHAYLLHGPQGIGKRAMAERLMARLLCQQPQGLDA-CGACK----SC 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + + SH + + L P+ I VD++R + F+ TA G +V++I+PV Sbjct: 64 LLLKAGSHPDN------FVLEPEEAD--KPIKVDQVRELVAFVVQTAQLGGRKVVLIEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + MN NA+NALLKSLEEP + +L++H +L TI+SRC + Sbjct: 116 EAMNVNASNALLKSLEEPSGDTVLLLVTHQPSRLLPTIKSRCQQV 160 >gi|139439947|ref|ZP_01773284.1| Hypothetical protein COLAER_02322 [Collinsella aerofaciens ATCC 25986] gi|133774713|gb|EBA38533.1| Hypothetical protein COLAER_02322 [Collinsella aerofaciens ATCC 25986] Length = 375 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 19/216 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L E + FL+ SGR HA LF G G GK + A L D A Sbjct: 11 KLDTQERVRDFLTNAVASGRASHAYLFLGAPGAGKLDAAWALAQAFLCEQDGCGA----- 65 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C V+ +A H D Y Y+ TG + + R + + L + Sbjct: 66 ----CDSCVR-VARHTHPDVHY--YTPESATGYL-----IAQTRELLDDVPLAPIRAKAK 113 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID + + N ANALLK+LEEPP+ V+FIL+ ++ +L TI SRC + F +S Sbjct: 114 VYIIDRAEQLRANTANALLKTLEEPPEGVMFILLGTSADVMLPTIVSRCQCVPFRLVSPT 173 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +A+ + G D R + +A GS R I+ L Sbjct: 174 VAARAVS--RATGQDLARCRMAVAVAGSPTRGIEFL 207 >gi|71734572|ref|YP_273890.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487543|ref|ZP_05641584.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71555125|gb|AAZ34336.1| DNA polymerase III, delta prime subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|330891465|gb|EGH24126.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. mori str. 301020] gi|331012637|gb|EGH92693.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 328 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|281421280|ref|ZP_06252279.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] gi|281404815|gb|EFB35495.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] Length = 370 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 34/344 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---------QNPD- 63 + G +++ L + R+ HAL+F G QG GK + +A ++L ++PD Sbjct: 6 VIGQQEVWNRLMEMVQENRLPHALMFCGPQGCGKLAMALAFASYLLGDSPMLRKWEHPDL 65 Query: 64 -FSKAPVRMCNP----DPCS-PFVKQMASHALHDFLYLSYS-LNPKTGKW------RTVI 110 F+ ++ N P S F+K+ L Y+ S K GK + +I Sbjct: 66 HFTFPTIKTANMGSEHKPVSLDFIKEWRELLLSKGPYIQISDWMLKMGKTDADYNKQAII 125 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 T +E I + L + ++ G +++ +I + MN +AN +LK LEEPP++ LF+L+S Sbjct: 126 TAEETDAISHELMMMSSQGGYKISLIWLPERMNIQSANKILKLLEEPPRQTLFLLVSENP 185 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +L TIRSR I F + + KAL + + + D +IA G+ A++ L Sbjct: 186 ELLLETIRSRTQRIDFKKIETAEMEKALTERRALEPDMAHRIARIAN-GNWNLALEEL-- 242 Query: 231 DCDKIISSYIDL-IHIPRQEYA-----LQKMQQIADELLSQDQKIAFDFLIEFILKEICK 284 D ++D+ I + R Y L+K + + QK D+ + + + Sbjct: 243 DAGNENRQHLDMFIMLMRLAYMRKIGDLKKWTDVIATFGREKQKRMLDYFMHMLRESFMY 302 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL--DRRQMI 326 + + LS ++ + A+ + + + + NL D ++MI Sbjct: 303 NFRNPELSYMTQDEENFAKNFARFINEANIIDISNLFEDSKRMI 346 >gi|300728370|ref|ZP_07061732.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] gi|299774289|gb|EFI70919.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] Length = 365 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 19/233 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---------QNPDF 64 + G E+ + L Q R+ HA+LF G QG GK L +A H+L ++PD Sbjct: 6 VIGQEEAAQHLLQLAEENRIPHAMLFCGPQGCGKMALALAFASHLLNDSPMLKKWEHPDL 65 Query: 65 S------KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKTG--KWRTVITVDEI 115 K P + P S F K L + + G + +IT E Sbjct: 66 YFTYPTIKLPGMGADHQPISDDFAKPWHEMLLQGAYFTVNQWMQQMGATSQQAIITAAES 125 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 I LSL ++ G ++V +I + MN +AN LLK LEEPP + +FIL+S +L Sbjct: 126 DAIAKNLSLKSSQGGYKVSIIWLPERMNLTSANKLLKILEEPPHETVFILVSEEPEHLLE 185 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 TIRSR F + + + +AL Q + + D R ++A G+ +A++ L Sbjct: 186 TIRSRTQRFDFKKIHNDAIQQALIQQRGLDEDIARRVARVAN-GNWNKALEEL 237 >gi|270307947|ref|YP_003330005.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS] gi|270153839|gb|ACZ61677.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS] Length = 562 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 136/282 (48%), Gaps = 31/282 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L SGR+ A LF G +G GK + G A V + Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 70 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K +PC+ P + + D + + + N TG VD+IR ++ Sbjct: 71 QGKG-------EPCNTCPMCLSITEGSSMDIIEIDAASN--TG-------VDDIRELKEK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 115 VQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F+ +S +++ + L+++ K + + + +K+ +A GS +L +I + Sbjct: 175 QRFDFHRVSLSDMTRKLDKISKAEDINIEPEALKLIARSAGGSFRDGENLLQ----QIAT 230 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL 274 +Y I + + + AL ++++ +A+ +L +D K L Sbjct: 231 TYGAEISLSQVQAALGISGDERIKTLAENILKKDIKNGLKTL 272 >gi|298486226|ref|ZP_07004289.1| DNA polymerase III delta prime subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159233|gb|EFI00291.1| DNA polymerase III delta prime subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|237800353|ref|ZP_04588814.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023210|gb|EGI03267.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. oryzae str. 1_6] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E Q + HA L G GIGK L R +L KAP + C Sbjct: 9 ESLWRQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPDGLDACGQCKSC 63 Query: 81 VKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A SH + Y L P+ I VD++R + F+ TA G +V++++PV Sbjct: 64 LLLLAGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 116 EAMNINAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] Length = 480 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 15/196 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G ++ +G + HA +F G +G GK T+ A + Sbjct: 6 RKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLNCENK 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P CN C + + + + D L + + N +DEIR+IR + Sbjct: 66 NGVEPCNKCNT--C----QSIDNGSFMDVLEIDAASNR---------GIDEIRKIRETVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 A G ++V +ID V + + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 YHAAQGNYKVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQV 170 Query: 184 IKFNSLSENNLYKALE 199 I F +L+ ++ K LE Sbjct: 171 IDFKNLTIEDIIKRLE 186 >gi|152984685|ref|YP_001347572.1| DNA polymerase III subunit delta' [Pseudomonas aeruginosa PA7] gi|150959843|gb|ABR81868.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa PA7] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ R HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRARHAHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|261364285|ref|ZP_05977168.1| DNA polymerase III, delta' subunit [Neisseria mucosa ATCC 25996] gi|288567532|gb|EFC89092.1| DNA polymerase III, delta' subunit [Neisseria mucosa ATCC 25996] Length = 365 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 22/187 (11%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G++ GK R+ L ++P P +C C F + SH DF Sbjct: 62 NAWLFTGKENTGKTAFA-RFVAQALLCESPREDHQPCGVCAS--CHLFSQN--SHP--DF 114 Query: 93 LYLSYSLNPK------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ G+ I +D +R I + LTA G RV+++ P + MN A Sbjct: 115 ----YELTPEIPEDGAVGRKLLQIKIDAVRDIVENIYLTAVRGGLRVVLVHPAESMNVQA 170 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 AN LLK+LEEPPQ V+F++++HA +L TI+SRC + + S + +AL L+ G Sbjct: 171 ANGLLKALEEPPQHVVFLMVTHARDKLLPTIKSRCRQMVLPAPSRD---EALAYLREEGV 227 Query: 207 DSKRDFV 213 D + + Sbjct: 228 DDAQSLL 234 >gi|330943541|gb|EGH45880.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. pisi str. 1704B] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G GIGK L R +L + PD A C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLLCKTPDGLDA-CGHCK----SCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNTNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|220927618|ref|YP_002504527.1| DNA polymerase III delta prime subunit [Clostridium cellulolyticum H10] gi|219997946|gb|ACL74547.1| DNA polymerase III, delta prime subunit [Clostridium cellulolyticum H10] Length = 322 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 17/214 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ I L + HA +FEG G+GK ++A ++ D + P C Sbjct: 1 MLGHQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASMLMCRED--QFPCGECK 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + ++ ++ + + S I+V+EIR I L + ++V Sbjct: 59 S--CQLY-REASNPDFQEIIQKDKS-----------ISVEEIRNILKGLVIRPLYSDYKV 104 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I+I+ D M A NALLKSLEEPP V+FIL + + TIRSRC I FN LS + Sbjct: 105 IIINDADTMTIQAQNALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRILFNRLSHED 164 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + +E K S +F+ A G A+++ Sbjct: 165 IMEIMES-KYGPRQSDWEFIVSYADGVAGTALEL 197 >gi|21230460|ref|NP_636377.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769546|ref|YP_244308.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. 8004] gi|21112024|gb|AAM40301.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574878|gb|AAY50288.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris str. 8004] Length = 653 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|71907818|ref|YP_285405.1| DNA polymerase III, delta prime subunit [Dechloromonas aromatica RCB] gi|71847439|gb|AAZ46935.1| DNA polymerase III, delta prime subunit [Dechloromonas aromatica RCB] Length = 339 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 10/156 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ H+LL G++G+GK L R+A +L ++P + C C+ F + +H Sbjct: 20 RLPHSLLLVGQKGLGKFELARRFAASLLCESPQSNGLACGKCLA--CNWF--EQGNHPDF 75 Query: 91 DFLY---LSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 L L + + GK + IT+D++R + F ++ + G R+++++P + MNR+ Sbjct: 76 RLLQPDALGEDVEVEDGKKKPSQQITIDQVRALDEFFNVGTHRGGLRIVIVNPTEAMNRS 135 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AN+LLK+LEEP LF+L+S +L TIRSRC Sbjct: 136 TANSLLKTLEEPSADTLFLLVSSEPMRLLPTIRSRC 171 >gi|304437633|ref|ZP_07397587.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369376|gb|EFM23047.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 613 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 19/179 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 L G E I + LS+ SG++ HA LF G +G GK + A + + P + P + Sbjct: 18 LVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNCAEGPTLT--PCGI 75 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + ++ + D + + N +DEIR +R + G++ Sbjct: 76 C--DSC----RSISDGSSMDVFEIDAASN---------RGIDEIRDLRESVKFAPTEGHY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC F+ ++ Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRIT 179 >gi|255974838|ref|ZP_05425424.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T2] gi|255967710|gb|EET98332.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T2] Length = 324 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 66 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 67 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 126 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 127 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 183 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 184 DRLIKQGIGEKTAILLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 243 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 244 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 299 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 300 QKWTANVSWQNV 311 >gi|330901143|gb|EGH32562.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. japonica str. M301072PT] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G GIGK L R +L + PD A C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLLCKTPDGLDA-CGHCK----SCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNTNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|313906298|ref|ZP_07839641.1| DNA polymerase III, subunits gamma and tau [Eubacterium cellulosolvens 6] gi|313468854|gb|EFR64213.1| DNA polymerase III, subunits gamma and tau [Eubacterium cellulosolvens 6] Length = 542 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 24/242 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P + + G + I K L + R+ HA LF G +G GK T+ +A V ++P Sbjct: 8 RKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAYLFCGTRGTGKTTIAKVFARAVNCEHP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +P C + C +K +++ + + + N VD IR IR + Sbjct: 68 LEDGSPCNEC--ETCRGILKGTSNNVIE----IDAASNNG---------VDNIREIREEV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 GYRPTQGKYKVYIIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSRCQ 172 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F+ ++ + + L +L + D +V A GS+ A+ +L D+ I+ Sbjct: 173 RYNFHRITIDTIAGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLL----DQCIAF 228 Query: 239 YI 240 Y+ Sbjct: 229 YL 230 >gi|294101730|ref|YP_003553588.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] gi|293616710|gb|ADE56864.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] Length = 554 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 14/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ + + +++ R+ HA LF G +G GK TL A + N Sbjct: 7 RRYRPAQFKQIVAQDAAVQVITKALEEKRVSHAYLFSGPRGCGKTTLARLLAKSL--NCT 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K V CN C + +L D + + + N +VDE+R ++ +S Sbjct: 65 GQKQSVEPCND--CPNCLAINGGESL-DVIEIDGASNN---------SVDEVRELKAHVS 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+A + ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TIRSRC Sbjct: 113 LSAFSSLYKVYIIDEVHMLSLSAFNALLKTLEEPPSHVVFILATTEPHKVPVTIRSRCQH 172 Query: 184 IKFNSLSENNLYKAL 198 I F + N+ K+L Sbjct: 173 IPFRKIDVQNIVKSL 187 >gi|298368409|ref|ZP_06979727.1| DNA polymerase III, delta' subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282412|gb|EFI23899.1| DNA polymerase III, delta' subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 329 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 19/155 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G + GK R+ L + P + P C C F ++ SH DF Sbjct: 22 NAWLFTGRENTGKTEFA-RFTAQALLCETPKDNHEPCGTCTS--CHLFAQK--SHP--DF 74 Query: 93 LYLSYSLNPKTGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ + V I +D +R I + LT+ G RV+++ P +GMN A Sbjct: 75 ----YELTPEIPEGEAVGRKLLQIKIDAVRGIVDGIHLTSVRGGLRVVLVHPAEGMNLQA 130 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AN+LLK LEEPP+ V+F+L++HA +L TI+SRC Sbjct: 131 ANSLLKVLEEPPEHVVFLLVTHARDKLLPTIKSRC 165 >gi|307278691|ref|ZP_07559759.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0860] gi|306504631|gb|EFM73833.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0860] Length = 316 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTAILLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|167032506|ref|YP_001667737.1| DNA polymerase III subunit delta' [Pseudomonas putida GB-1] gi|166858994|gb|ABY97401.1| DNA polymerase III, delta prime subunit [Pseudomonas putida GB-1] Length = 328 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E Q + HA L G QGIGK L R ++ C S Sbjct: 9 EALWQQLAGRSQHAHAYLLHGPQGIGKRALAERLMARLMCQRPLGLEACGECK----SCL 64 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + + SH + + L P+ I VD++R + F+ TA G +V++I+PV+ Sbjct: 65 LLKAGSHPDN------FVLEPEEAD--KPIKVDQVRELVAFVVQTAQLGGRKVVLIEPVE 116 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 MN NA+NALLKSLEEP + +L++H +L TI+SRC + Sbjct: 117 AMNVNASNALLKSLEEPSGDTVLLLVTHQPSRLLPTIKSRCQQV 160 >gi|58580687|ref|YP_199703.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622621|ref|YP_449993.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578335|ref|YP_001915264.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425281|gb|AAW74318.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366561|dbj|BAE67719.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522787|gb|ACD60732.1| DNA polymerase III subunit gamma/tau [Xanthomonas oryzae pv. oryzae PXO99A] Length = 698 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|218901224|ref|YP_002449058.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] Length = 562 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + A+ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGAISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|154506310|ref|ZP_02043048.1| hypothetical protein RUMGNA_03858 [Ruminococcus gnavus ATCC 29149] gi|153793399|gb|EDN75819.1| hypothetical protein RUMGNA_03858 [Ruminococcus gnavus ATCC 29149] Length = 331 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 18/215 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + GH++I +++ + ++ HA + GE+G GK L +A + QN D C Sbjct: 7 VVGHKNIIQYIENAVKTDKVSHAYILNGEKGSGKRLLANLFAMSLQCQNRDEDGDACGKC 66 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 KQ AS+ D + +++ P T I++D+IR +I + + + + Sbjct: 67 QS------CKQAASNNQPDIIRVTHE-KPNT------ISIDDIREQINNDIVIKPYSSKY 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ ++ D M+ A NALLK++EEPP + +L++ + +L TIRSRC+ +K ++ + Sbjct: 114 KIYIVPDADMMSVQAQNALLKTIEEPPAYAVILLLTENAEILLPTIRSRCVMLKLRNIKD 173 Query: 192 NNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L EQ++I D K D A G++ RAI Sbjct: 174 QLIKKYLMEQMEI--PDYKADVCVAFAQGNMGRAI 206 >gi|325275806|ref|ZP_08141674.1| DNA polymerase III subunit delta' [Pseudomonas sp. TJI-51] gi|324099058|gb|EGB97036.1| DNA polymerase III subunit delta' [Pseudomonas sp. TJI-51] Length = 172 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 14/151 (9%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HA L G QGIGK + R +L Q P A C S + + SH + Sbjct: 23 HAYLLHGPQGIGKRAMAERLMARLLCQQPQGLDA-CGTCK----SCLLLKAGSHPDN--- 74 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 Y L P+ I VD++R + F+ TA G +V++I+PV+ MN NA+NALLKS Sbjct: 75 ---YILEPEEAD--KPIKVDQVRELVAFVVQTAQLGGRKVVLIEPVEAMNVNASNALLKS 129 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSI 184 LEEP + +L++H +L TI+SRC + Sbjct: 130 LEEPSGDTVLLLVTHQPSRLLPTIKSRCQQV 160 >gi|256960993|ref|ZP_05565164.1| DNA polymerase III delta prime subunit [Enterococcus faecalis Merz96] gi|257079925|ref|ZP_05574286.1| DNA polymerase III delta prime subunit [Enterococcus faecalis JH1] gi|257420149|ref|ZP_05597143.1| DNA polymerase III delta' subunit [Enterococcus faecalis T11] gi|256951489|gb|EEU68121.1| DNA polymerase III delta prime subunit [Enterococcus faecalis Merz96] gi|256987955|gb|EEU75257.1| DNA polymerase III delta prime subunit [Enterococcus faecalis JH1] gi|257161977|gb|EEU91937.1| DNA polymerase III delta' subunit [Enterococcus faecalis T11] Length = 324 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 66 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 67 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 126 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 127 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 183 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 184 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 243 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 244 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKITE--EQAERLALILKAR 299 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 300 QKWTANVSWQNV 311 >gi|23097484|ref|NP_690950.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] gi|22775707|dbj|BAC11985.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] Length = 569 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 27/282 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I + L + HA LF G +G GK + +A Q + Sbjct: 8 RVWRPRTFEDVVGQTHITRTLQNAIEQDKFSHAYLFSGPRGTGKTSAAKIFA----QTIN 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV+ +PC+ + + ++ D + + + N +VD+IR IR Sbjct: 64 CEHAPVK----EPCNECAACRGIQDGSVSDVIEIDAASN---------TSVDDIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +T ++V +ID V ++ NA NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSTVPYKVYIIDEVHMISVNAFNALLKTLEEPPKHVVFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCD 233 F +S ++ ++ + I D + V +AA G + A+ IL Y + Sbjct: 171 QRFDFKPISNQSIVGRMQTIMQAENIHVTDEALESVALAAEGGMRDALSILDQAISYSEE 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 K+I + + + L K+ +E Q+ +A D +I Sbjct: 231 KVILEDVLAVTGGVSQVVLHKVVSAMNENNVQEVLVALDEMI 272 >gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei ATCC 43531] gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei ATCC 43531] Length = 615 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 23/221 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 L G E I + LS+ SG++ HA LF G +G GK + A + + P + P Sbjct: 18 LVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNCAEGPTLT--PCGH 75 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + ++ + D + + N +DEIR +R + G + Sbjct: 76 C--DSC----RSISDGSSMDVFEIDAASN---------RGIDEIRDLRESVKFAPTEGLY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC F+ ++ Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITV 180 Query: 192 NNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKIL 228 + L + K G +++ D + + A G + A+ IL Sbjct: 181 TEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSIL 221 >gi|330962618|gb|EGH62878.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. maculicola str. ES4326] Length = 328 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-S 86 +GR HA L G GIGK L R +L K P + C + +A S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKTPAGLDACGQCKSCLLLLAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++PV+ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNVNA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|104780790|ref|YP_607288.1| DNA polymerase III subunit delta' [Pseudomonas entomophila L48] gi|95109777|emb|CAK14482.1| DNA polymerase III, delta prime subunit [Pseudomonas entomophila L48] Length = 328 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 16/158 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 +GR HA L G QGIGK L R +L Q P A C +K S Sbjct: 16 AGRAQHAHAYLLHGPQGIGKRALAERLMARLLCQQPQGLDA----CGQCKACLLLK-AGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + L + P I +D++R + F+ TA G +V++I+PV+ MN NA Sbjct: 71 HPDNFVLEPEEADKP--------IKIDQVRELVSFVVQTAQQGGRKVVLIEPVEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +NALLKSLEEP + +L+SH +L TI+SRC + Sbjct: 123 SNALLKSLEEPSGDTVLLLVSHQPSRLLPTIKSRCQQV 160 >gi|256616737|ref|ZP_05473583.1| DNA polymerase III delta prime subunit [Enterococcus faecalis ATCC 4200] gi|256596264|gb|EEU15440.1| DNA polymerase III delta prime subunit [Enterococcus faecalis ATCC 4200] Length = 324 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 66 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 67 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 126 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 127 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 183 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 184 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 243 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 244 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVSTQQAKKVTE--EQAERLALILKAR 299 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 300 QKWTANVSWQNV 311 >gi|315032612|gb|EFT44544.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0017] gi|315143845|gb|EFT87861.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX2141] Length = 316 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVSTQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|152973871|ref|YP_001373388.1| DNA polymerase III subunits gamma and tau [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022623|gb|ABS20393.1| DNA polymerase III, subunits gamma and tau [Bacillus cytotoxicus NVH 391-98] Length = 562 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFADVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVKYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKI-MGWDSKRDFVKI---AAYGSVARAIKIL 228 +F +S +++ + LE + G + + ++I AA G + A+ I+ Sbjct: 171 QRFEFRKISVHDIVERLETVVTNEGTKVENEALQIVARAAEGGMRDALSII 221 >gi|210629774|ref|ZP_03296118.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279] gi|210160801|gb|EEA91772.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279] Length = 387 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 12/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNP 62 R + P+ + + G + I L GR+ HA LF G +G GK T+ A +L + Sbjct: 6 RKYRPLTFESVVGQQHIVSTLKHAVAEGRLSHAYLFCGPRGTGKTTMARILAKSLLCEGS 65 Query: 63 DFSKAP-VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + ++A C PD P + +A+ D L + +TG VD +R I Sbjct: 66 EAARATGASGCMPDGTCPECEAIAAGTHPDVYELDAA--SRTG-------VDNVREEIIN 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID V + A NALLK+LEEPP V+F+L + IL TI SR Sbjct: 117 SVSFAPVRGAYKVYIIDEVHMLTTAAFNALLKTLEEPPSHVVFVLCTTDPQKILETILSR 176 Query: 181 CLSIKFNSLSENNLYKAL 198 C F+ +S ++ L Sbjct: 177 CQRFDFHRISNEDIVGRL 194 >gi|293384621|ref|ZP_06630486.1| DNA polymerase III, delta prime subunit [Enterococcus faecalis R712] gi|293386760|ref|ZP_06631331.1| DNA polymerase III, delta prime subunit [Enterococcus faecalis S613] gi|294779716|ref|ZP_06745104.1| DNA polymerase III, delta' subunit [Enterococcus faecalis PC1.1] gi|307269209|ref|ZP_07550563.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX4248] gi|307290234|ref|ZP_07570150.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0411] gi|312900121|ref|ZP_07759437.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0470] gi|312906445|ref|ZP_07765453.1| DNA polymerase III, delta' subunit [Enterococcus faecalis DAPTO 512] gi|312979397|ref|ZP_07791085.1| DNA polymerase III, delta' subunit [Enterococcus faecalis DAPTO 516] gi|291078079|gb|EFE15443.1| DNA polymerase III, delta prime subunit [Enterococcus faecalis R712] gi|291083763|gb|EFE20726.1| DNA polymerase III, delta prime subunit [Enterococcus faecalis S613] gi|294453207|gb|EFG21621.1| DNA polymerase III, delta' subunit [Enterococcus faecalis PC1.1] gi|295113697|emb|CBL32334.1| DNA polymerase III, delta prime subunit [Enterococcus sp. 7L76] gi|306498655|gb|EFM68156.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0411] gi|306514428|gb|EFM82989.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX4248] gi|310627599|gb|EFQ10882.1| DNA polymerase III, delta' subunit [Enterococcus faecalis DAPTO 512] gi|311287768|gb|EFQ66324.1| DNA polymerase III, delta' subunit [Enterococcus faecalis DAPTO 516] gi|311292756|gb|EFQ71312.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0470] gi|329572899|gb|EGG54520.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX1467] Length = 316 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKITE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|310830104|ref|YP_003962461.1| hypothetical protein ELI_4564 [Eubacterium limosum KIST612] gi|308741838|gb|ADO39498.1| hypothetical protein ELI_4564 [Eubacterium limosum KIST612] Length = 320 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 15/213 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E I+K L+ + + HA LF G++GIGK + +A +L D + P C P Sbjct: 8 QERIKKLLAGSIANHEVSHAYLFVGKKGIGKTMMALEFAKALLCRGD--EKPCGTC--IP 63 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C + H H + ++ + GK + I +D++R++ L + RV +I Sbjct: 64 C-----EKIEHGNHPDVLIT-----QPGKGESAIKIDQVRKLIATLPVKPFESELRVSII 113 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 D M A NALLKSLEEP +FI+ + +L+TIRSRC + F +S+ + + Sbjct: 114 KGGDKMTPEAQNALLKSLEEPEPHNVFIITAENLEKMLNTIRSRCQVLGFEPVSDAGIRE 173 Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L+Q K D + GS +A++ L Sbjct: 174 ILKQ-KGCAPGEAVDQAIYSCEGSPGKALEFLE 205 >gi|166710949|ref|ZP_02242156.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzicola BLS256] Length = 698 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|66044898|ref|YP_234739.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. syringae B728a] gi|63255605|gb|AAY36701.1| DNA polymerase III delta prime subunit [Pseudomonas syringae pv. syringae B728a] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 22/159 (13%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC----SPFVKQ 83 +GR HA L G GIGK L R +L K P + D C S + Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKTPEGL---DACGHCKSCLLLA 67 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH + Y L P+ I VD++R + F+ TA G +V++++PV+ MN Sbjct: 68 AGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMN 119 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 120 TNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|78046683|ref|YP_362858.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035113|emb|CAJ22758.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 683 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|302187272|ref|ZP_07263945.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. syringae 642] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 22/159 (13%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC----SPFVKQ 83 +GR HA L G GIGK L R +L K P + D C S + Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKTPEGL---DACGHCKSCLLLA 67 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH + Y L P+ I VD++R + F+ TA G +V++++PV+ MN Sbjct: 68 AGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVESMN 119 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 120 TNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|168700663|ref|ZP_02732940.1| DNA polymerase III gamma and tau subunits [Gemmata obscuriglobus UQM 2246] Length = 614 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 131/287 (45%), Gaps = 26/287 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L SGR+ HA LF G +G+GK T R L Sbjct: 19 VVARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGK-TSAARILAKALN 77 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 KA C D C M + D L + + N K V+E+R +R Sbjct: 78 CLKTDKATPTPC--DECDSCRAVMTGDDV-DVLEIDGASNNK---------VEEVRDLRQ 125 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ +A NALLK+LEEPP+ V FIL + I TI SR Sbjct: 126 NVGFRPARGRYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSR 185 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILHYDCDKII 236 C F + +++ L+++ + G + D +++ A GS+ + +L D+++ Sbjct: 186 CQRFDFAHVGPGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLL----DQLL 241 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFI 278 +S + + L ++ ++A +L+ D K A D + E++ Sbjct: 242 ASSSGTLTAGQVTAVLGTAGDDRVIELAKAILANDPKTALDRIAEWV 288 >gi|88607018|ref|YP_505360.1| hypothetical protein APH_0783 [Anaplasma phagocytophilum HZ] gi|88598081|gb|ABD43551.1| conserved domain protein [Anaplasma phagocytophilum HZ] Length = 292 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 34/177 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH ++ L Q R + L G++GIGKATL YA + ++ P Sbjct: 4 VVGHSAQKETLWQ----NREVNTWLLCGKRGIGKATLSHAYARFLTRSDSLDSHPDVAII 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D SP I +D+IR+I++FL ++ + ++ Sbjct: 60 DDETSP------------------------------IGIDKIRKIKHFLHMSPISAERKI 89 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++D +DG+N N N++LK LEEPPQ L ++ISH ++ IRSRC+ + F+ LS Sbjct: 90 VILDSIDGLNSNTINSMLKILEEPPQHSLILIISHNLYSVPIVIRSRCMILSFSQLS 146 >gi|330878245|gb|EGH12394.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SP 79 E Q + HA L G GIGK L R +L +AP + C S Sbjct: 9 ESLWQQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CRAPEGLEACGHCKSC 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + SH + Y L P+ I VD++R + F+ TA G +V++++PV Sbjct: 64 LLLVAGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|325295139|ref|YP_004281653.1| DNA polymerase III, delta prime subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065587|gb|ADY73594.1| DNA polymerase III, delta prime subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 276 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 40/231 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH L + R + LF G +GIGK + + ++P VR+ Sbjct: 6 IVGHSKQISILKSLIAAERFPQSSLFVGSEGIGKKLIAIEVLKLLTESP----LNVRILG 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + T++EIR + +L ++G + Sbjct: 62 EEKAA--------------------------------TIEEIREVSEWLFKKPSSGKGKG 89 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ID + M AANALLK+LEEPP ILI+ IL T+RSRC +F LS++N Sbjct: 90 LVIDNAEEMRSEAANALLKTLEEPPNYGFIILITKNEEAILPTLRSRCKVFRFGKLSDSN 149 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 + LE+L G + +K+ + GSV A+K+ +I +I+L+ Sbjct: 150 IEYILEKL---GLKVDKRVIKL-SNGSVGMAVKLSETPIPDLIKEFINLMK 196 >gi|197302301|ref|ZP_03167360.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC 29176] gi|197298732|gb|EDY33273.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC 29176] Length = 522 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 27/243 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPAEFEDVKGQEHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAV----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV N PC K +A+ + + + + N VD IR IR Sbjct: 63 NCEHPV---NGSPCGECAMCKSIAAGTSMNVIEIDAASNNG---------VDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + +++L +I D ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITARMQELMDTEQIEVEDKALRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI 240 Y+ Sbjct: 227 FYL 229 >gi|330973852|gb|EGH73918.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. aceris str. M302273PT] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 22/159 (13%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC----SPFVKQ 83 +GR HA L G GIGK L R +L K P + D C S + Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKTPEGL---DACGHCKSCLLLA 67 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH + Y L P+ I VD++R + F+ TA G +V++++PV+ MN Sbjct: 68 AGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMN 119 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 120 TNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|255971841|ref|ZP_05422427.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T1] gi|256763383|ref|ZP_05503963.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T3] gi|256957988|ref|ZP_05562159.1| DNA polymerase III delta prime subunit [Enterococcus faecalis DS5] gi|256963865|ref|ZP_05568036.1| DNA polymerase III delta prime subunit [Enterococcus faecalis HIP11704] gi|257084274|ref|ZP_05578635.1| DNA polymerase III delta prime subunit [Enterococcus faecalis Fly1] gi|257087727|ref|ZP_05582088.1| DNA polymerase III delta prime subunit [Enterococcus faecalis D6] gi|257090999|ref|ZP_05585360.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188] gi|257416930|ref|ZP_05593924.1| DNA polymerase III delta prime subunit [Enterococcus faecalis AR01/DG] gi|255962859|gb|EET95335.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T1] gi|256684634|gb|EEU24329.1| DNA polymerase III delta prime subunit [Enterococcus faecalis T3] gi|256948484|gb|EEU65116.1| DNA polymerase III delta prime subunit [Enterococcus faecalis DS5] gi|256954361|gb|EEU70993.1| DNA polymerase III delta prime subunit [Enterococcus faecalis HIP11704] gi|256992304|gb|EEU79606.1| DNA polymerase III delta prime subunit [Enterococcus faecalis Fly1] gi|256995757|gb|EEU83059.1| DNA polymerase III delta prime subunit [Enterococcus faecalis D6] gi|256999811|gb|EEU86331.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188] gi|257158758|gb|EEU88718.1| DNA polymerase III delta prime subunit [Enterococcus faecalis ARO1/DG] Length = 324 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 66 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 67 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 126 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 127 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 183 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 184 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 243 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 244 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 299 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 300 QKWTANVSWQNV 311 >gi|29377236|ref|NP_816390.1| DNA polymerase III subunit delta' [Enterococcus faecalis V583] gi|227554245|ref|ZP_03984292.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22] gi|229544856|ref|ZP_04433581.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322] gi|229549123|ref|ZP_04437848.1| DNA polymerase III subunit delta' [Enterococcus faecalis ATCC 29200] gi|256854057|ref|ZP_05559422.1| DNA polymerase III subunit delta' [Enterococcus faecalis T8] gi|300861148|ref|ZP_07107235.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TUSoD Ef11] gi|307271813|ref|ZP_07553084.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0855] gi|307276998|ref|ZP_07558108.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX2134] gi|307288620|ref|ZP_07568601.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0109] gi|312902585|ref|ZP_07761791.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0635] gi|312951936|ref|ZP_07770824.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0102] gi|29344702|gb|AAO82460.1| DNA polymerase III, delta prime subunit [Enterococcus faecalis V583] gi|227176605|gb|EEI57577.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22] gi|229305748|gb|EEN71744.1| DNA polymerase III subunit delta' [Enterococcus faecalis ATCC 29200] gi|229310024|gb|EEN76011.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322] gi|256711000|gb|EEU26043.1| DNA polymerase III subunit delta' [Enterococcus faecalis T8] gi|300850187|gb|EFK77937.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TUSoD Ef11] gi|306500374|gb|EFM69710.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0109] gi|306506421|gb|EFM75581.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX2134] gi|306511691|gb|EFM80690.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0855] gi|310630125|gb|EFQ13408.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0102] gi|310634255|gb|EFQ17538.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0635] gi|315025472|gb|EFT37404.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX2137] gi|315030418|gb|EFT42350.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX4000] gi|315035133|gb|EFT47065.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0027] gi|315151796|gb|EFT95812.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0012] gi|315154275|gb|EFT98291.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0031] gi|315159633|gb|EFU03650.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0312] gi|315162074|gb|EFU06091.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0645] gi|315165329|gb|EFU09346.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX1302] gi|315168743|gb|EFU12760.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX1341] gi|315170441|gb|EFU14458.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX1342] gi|315173502|gb|EFU17519.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX1346] gi|315573800|gb|EFU85991.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0309B] gi|315579605|gb|EFU91796.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0630] gi|315580312|gb|EFU92503.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX0309A] gi|323481683|gb|ADX81122.1| DNA polymerase III subunit delta' [Enterococcus faecalis 62] gi|327535976|gb|AEA94810.1| DNA-directed DNA polymerase III subunit delta [Enterococcus faecalis OG1RF] Length = 316 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|302336636|ref|YP_003801842.1| DNA polymerase III subunits gamma and tau [Spirochaeta smaragdinae DSM 11293] gi|301633821|gb|ADK79248.1| DNA polymerase III, subunits gamma and tau [Spirochaeta smaragdinae DSM 11293] Length = 581 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 132/280 (47%), Gaps = 35/280 (12%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + L G + + LS SGR+ HA LF G +G+GK T R L + K P Sbjct: 16 ETLVGQDFVVSTLSSAVSSGRIAHAYLFSGPRGVGK-TSAARLLAKAL---NCEKGPT-- 69 Query: 72 CNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 P PC ++++ D + + + N +V+++R I+ + N+G Sbjct: 70 --PAPCGECSSCQEISRGNSLDVIEIDGASN---------TSVNDVREIKDEVLFAPNSG 118 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ +A NALLK++EEPP ++FI + + +TIRSRC F + Sbjct: 119 RYKVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEIHKVPATIRSRCQQFNFRLI 178 Query: 190 S----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDL 242 +N L +A +L+I D ++ A GS+ A + D++ S I L Sbjct: 179 QPETIKNKLAEAAAELQIEAEDEALFWIAKEATGSLRDAYTLF----DQVASFSDKGITL 234 Query: 243 IHIPRQE---YALQKMQQIADELLSQDQKIAFDFLIEFIL 279 I RQ+ L+++ +A+ L +D A + L E +L Sbjct: 235 EEI-RQKLGLVGLERINGVAEALAEEDAGKAIE-LTESVL 272 >gi|315925898|ref|ZP_07922103.1| DNA-directed DNA polymerase III subunit delta' [Pseudoramibacter alactolyticus ATCC 23263] gi|315620719|gb|EFV00695.1| DNA-directed DNA polymerase III subunit delta' [Pseudoramibacter alactolyticus ATCC 23263] Length = 330 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 16/218 (7%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 V + + G E I+ L++ ++ HA L G QGIGK TL +A +L ++ P Sbjct: 3 VMFEGIIGQERIKNLLTRAVQQDQISHAYLLTGPQGIGKTTLARAFAKAILCTAPPAQRP 62 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 C + + + DFL ++ P+ G I + ++R++ ++ Sbjct: 63 CGECAS------CRHVTAETHPDFLKVA----PQEGAKN--IKIAQVRQLLTAIAARTFD 110 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G RV +I + M A NALLKSLEEP +FI+++ IL TIRSRC + + Sbjct: 111 GGNRVCLIAQGETMTPEAQNALLKSLEEPEPGNVFIILAENGEKILPTIRSRCQRLALDP 170 Query: 189 LSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAI 225 LS+ + LE G ++ + D + A G RA+ Sbjct: 171 LSDGQMRAVLE---AAGCEAAQMDALVQGAQGCPGRAL 205 >gi|330952694|gb|EGH52954.1| DNA polymerase III subunit delta' [Pseudomonas syringae Cit 7] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 14/155 (9%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 +GR HA L G GIGK L R +L K P + C + +A+ Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKTPEGLDACGHCKSCLL-LAAG 69 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + D +Y L P+ I VD++R + F+ TA G +V++++PV+ MN NAA Sbjct: 70 SPPD----NYVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNTNAA 123 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 124 NALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|224025905|ref|ZP_03644271.1| hypothetical protein BACCOPRO_02651 [Bacteroides coprophilus DSM 18228] gi|224019141|gb|EEF77139.1| hypothetical protein BACCOPRO_02651 [Bacteroides coprophilus DSM 18228] Length = 375 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 29/241 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA----P 68 + G + +++ L + +GR HALLF G G GK + A ++ ++PD +A P Sbjct: 7 IIGQDSVKERLRENVRNGRTPHALLFTGPSGCGKLPMALALARYLCCEHPDEMEACGTCP 66 Query: 69 V-----RMCNPDP--CSPFVKQMASH--ALHDFL-----YLSYSLNPKTGKWRTVITVDE 114 R+ +PD P VK+ A DFL L + +W V+ D Sbjct: 67 SCIQMNRLVHPDVHFVFPIVKKKAGRDSVCDDFLPQWREALMKNAYLTPDEWMRVLGSDN 126 Query: 115 IR---------RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 ++ I+ LSL ++ G W+V++I + MN AN LLK LEEPPQ+ LF+L Sbjct: 127 LQPQIYVRESDEIQRKLSLKSSRGGWKVMIIWLPEKMNAECANKLLKLLEEPPQRTLFLL 186 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +S +LSTI SR I L E L LE+ ++ + D + GS+ +A+ Sbjct: 187 VSEEPDLLLSTIVSRTQRISLPPLEEKPLADWLERKFMLHPEDAADIAH-RSEGSLTKAM 245 Query: 226 K 226 + Sbjct: 246 E 246 >gi|328954114|ref|YP_004371448.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] Length = 546 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 95/207 (45%), Gaps = 16/207 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I + L SGR+ HA LF G +G+GK ++ R L Sbjct: 5 VLARKWRPQNFDEVVGQEHITRTLKNALESGRVAHAFLFSGPRGVGKTSIA-RILAKAL- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N AP CN C V+ H+L D L + + N +DE+R +R Sbjct: 63 NCAEGPAPT-PCNR--CQSCVEITQGHSL-DVLEIDGASN---------RGIDEVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP +FI+ + S + TI SR Sbjct: 110 NIKYLPAHGSYKVFIIDEVHMLTKEAFNALLKTLEEPPPHAIFIMATTESHKVPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIM-GW 206 C F LS + L L GW Sbjct: 170 CQRYDFKRLSTAAIQAHLANLTAQEGW 196 >gi|120437619|ref|YP_863305.1| DNA polymerase III subunit delta' [Gramella forsetii KT0803] gi|117579769|emb|CAL68238.1| DNA polymerase III subunit delta' [Gramella forsetii KT0803] Length = 385 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 129/295 (43%), Gaps = 48/295 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G I+ L+ R+ HA LF G+ G G + YA ++L Sbjct: 6 IIGLPHIKNHLTTTADRNRIPHAQLFTGKSGSGALPMAIAYAQYILCKNTGGENDSNTAA 65 Query: 60 ---------QNPDFSKA-PVRMCNPDPCSP-----------FVKQMASHALHDFLYLSYS 98 +PD A PV + P F+K +L+D+ Y S Sbjct: 66 GCNLKFNNHSHPDLHFAFPVATNDKIKSQPISSHFLDEWRNFLKTNPYGSLYDW-YQSLG 124 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K GK I V E + I LSL A G ++V++I + MN AAN LLK +EEPP Sbjct: 125 IEKKQGK----IGVHEAQNIVKSLSLKAYEGGFKVMIIWMAEKMNMEAANKLLKLIEEPP 180 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-- 216 K +F+LIS I+ TIRSRC S+ F LSE ++ L + + S KIA Sbjct: 181 NKTVFLLISEDEEQIIQTIRSRCQSLYFPPLSEADIANTLAEKENC---SPAIAKKIAHQ 237 Query: 217 AYGSVARAIKILHYDC-DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 A G +AI IL + D+ ++ I R + + + EL+S ++IA Sbjct: 238 ANGDYTKAIHILRKNSGDEQFEAW--FISWVRSAFKAKGNKSTVLELVSWSEEIA 290 >gi|319936700|ref|ZP_08011113.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808257|gb|EFW04822.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 619 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 99/232 (42%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L ++ HA LF G +G GK T+ A Sbjct: 8 RVYRPQRFDEVAGQEHIITTLRHAVEENKIAHAYLFCGPRGTGKTTIAKLLA-------- 59 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KA NP PC K++AS D + + + N VDE+R + Sbjct: 60 --KAINCTGNPKPCDECENCKEIASGNHPDVIEIDAASNN---------GVDEVRNLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 109 VKYAPTQGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHVVFILATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F LS N + +EQ + D + + A G + A+ IL Sbjct: 169 QRFDFMKLSLTEIVNRMKSVVEQENYICDDEALEMIAKLADGGMRDALSILE 220 >gi|294627932|ref|ZP_06706511.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597846|gb|EFF42004.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 689 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|28870980|ref|NP_793599.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tomato str. DC3000] gi|301386510|ref|ZP_07234928.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tomato Max13] gi|302062081|ref|ZP_07253622.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tomato K40] gi|302134675|ref|ZP_07260665.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854229|gb|AAO57294.1| DNA polymerase III, delta prime subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331019149|gb|EGH99205.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SP 79 E Q + HA L G GIGK L R +L +AP + C S Sbjct: 9 ESLWQQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CRAPEGLEACGHCKSC 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + SH + Y L P+ I VD++R + F+ TA G +V++++PV Sbjct: 64 LLLVAGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPV 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|289548561|ref|YP_003473549.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182178|gb|ADC89422.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 320 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC----- 72 E + FL + Y GR+ A++F G++G+GKA + F A +L S P C Sbjct: 3 EKLRSFLEKMYKRGRVPSAIIFYGKEGVGKAYMAFELAKALL-CLRRSYPPCGECASCHL 61 Query: 73 -----NPDPCSPFVKQMASHALHDFLYLSYS------LNPKTGKWRTVITVDEIRRIRYF 121 D S V + +LYL L P+ + I VD+IR ++ F Sbjct: 62 MDDFLKKDDESKKVYGESDSGKKVYLYLQGDHPDFVYLKPEKAE----IKVDQIRGVKDF 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LT +V+++ P + MN A NA LK LEEPP F+L++H IL T++SRC Sbjct: 118 TLLTPAMSRKKVVLVKPAEAMNVYAQNAFLKLLEEPPADTHFLLVTHNLQNILPTVKSRC 177 Query: 182 LSIKFNSLSENNL 194 ++ ++ L Sbjct: 178 FLLEVPPYTQEEL 190 >gi|320325317|gb|EFW81384.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. glycinea str. B076] Length = 328 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQMAS 86 +GR HA L G GIGK L R +L KAP + C S + S Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CKAPEALEACGHCKSCLLLAAGS 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + Y L P+ I VD++R + F+ TA G +V++++P++ MN NA Sbjct: 71 HPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPLEAMNINA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 123 ANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 158 >gi|260776402|ref|ZP_05885297.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus ATCC BAA-450] gi|260607625|gb|EEX33890.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus ATCC BAA-450] Length = 694 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 155/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFNEVVGQRHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGIC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 +S +N+++ L+ + +K S RA+ ++ + D S D + Sbjct: 173 FHLKPISVDNIHEQLDHI-----------LKHEQVSSEPRALGMIAHAAD---GSMRDAL 218 Query: 244 HIPRQEYALQKMQQIADEL------LSQDQKIAFDFLIEFILKEICKSA--KAAALSGQL 295 + Q AL Q +AD + L DQ + L+E I + + A +AL+ Sbjct: 219 SLSDQAIALGNGQVLADSVAHMLGTLDTDQAL---HLLEAISSKQPQVAMDSLSALAQNG 275 Query: 296 EEADQIAQIYFSLVKRVHAFSMY-----NLDRRQM---IFHLLSKARECND--LYFR 342 E D + Q L ++H +MY LD+ Q LLS+A D LY++ Sbjct: 276 VEWDGLLQ---QLATQLHRLAMYQALPATLDKAQPDAEKVELLSRALAPQDVQLYYQ 329 >gi|167747823|ref|ZP_02419950.1| hypothetical protein ANACAC_02545 [Anaerostipes caccae DSM 14662] gi|167653185|gb|EDR97314.1| hypothetical protein ANACAC_02545 [Anaerostipes caccae DSM 14662] Length = 335 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 24/225 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V GH+ I + + +G++ HA L GE G GK TL +A +L Sbjct: 7 KSFDNV-----VGHKKIIQHFEEAIQTGQISHAYLLNGEDGSGKMTLAKAFAKALLCEKH 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 C C+P +Q + D +Y+++ + I VDEIR+ I + Sbjct: 62 EG------CGQ--CTP-CRQADTGNHPDLIYITHE--------KYEIRVDEIRQGINETI 104 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + +++ ++D D MN A NALLK+LEEPP+ + +L+++ +L TI SRC+ Sbjct: 105 DIKPYSSNYKIYIVDDADRMNVGAQNALLKTLEEPPEYAVILLLTNNKDRLLETILSRCV 164 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + ++ E+ + L++ + DF + G++ +A+ + Sbjct: 165 CMSLGTVPEDQIRDYLKE-HTQADEDMIDFAVSFSLGNLGKAVHV 208 >gi|77360144|ref|YP_339719.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas haloplanktis TAC125] gi|76875055|emb|CAI86276.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas haloplanktis TAC125] Length = 842 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C+ C K + + D L + + K V++ R I Sbjct: 65 DEGISANPCGQCSS--C----KDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 CL N+LS++ + LE + K+ D + AA GS+ A+ + Sbjct: 170 CLQFNLNALSQSEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSL 220 >gi|313664897|ref|YP_004046768.1| DNA polymerase III, subunit gamma and tau [Mycoplasma leachii PG50] gi|312949914|gb|ADR24510.1| DNA polymerase III, subunit gamma and tau [Mycoplasma leachii PG50] Length = 664 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 17/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 RA+ P + GH +I++ L + R++HALLF G++G GK ++ +A + N Sbjct: 10 RAYRPKDFSSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTINCLNL 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 SKA CN C K + L D + + + N VDEIR I+ + Sbjct: 70 IGSKA-CEQCNN--C----KLANENQLIDIIEIDAASNN---------GVDEIREIKNSV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 114 STLPINSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 174 IFNFTKIKKNSLKNRLQ 190 >gi|294666543|ref|ZP_06731784.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603687|gb|EFF47097.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 689 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|21241864|ref|NP_641446.1| DNA polymerase III subunits gamma and tau [Xanthomonas axonopodis pv. citri str. 306] gi|21107246|gb|AAM35982.1| DNA polymerase III tau and gamma subunits [Xanthomonas axonopodis pv. citri str. 306] Length = 689 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N TG VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E+ + + ++ Sbjct: 170 CLQFNLKRLDEDQIQGQMTRI 190 >gi|227519455|ref|ZP_03949504.1| DNA polymerase III subunit delta' [Enterococcus faecalis TX0104] gi|227073067|gb|EEI11030.1| DNA polymerase III subunit delta' [Enterococcus faecalis TX0104] Length = 316 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGVGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMIKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|270158083|ref|ZP_06186740.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae D-4968] gi|289163651|ref|YP_003453789.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae NSW150] gi|269990108|gb|EEZ96362.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae D-4968] gi|288856824|emb|CBJ10635.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae NSW150] Length = 549 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 30/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G + I+ L+ R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQDHIKTALTNALNQQRLHHAYLFTGTRGVGKTSIARILAKSLNCEQG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C C A+ ++ K R T D + ++Y Sbjct: 68 INSMPCLLCGT--CC---------AIEQGRFIDLIEIDGASKTRVEDTRDLLDNVQYL-- 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +G +++ +ID V +++++ NALLK+LEEPP+ V FIL + + T+ SRCL Sbjct: 115 --PTSGRFKIYLIDEVHMLSQHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKILHY---DCD 233 LS + +QL+++ D + DF + AA GS+ A+ +L C Sbjct: 173 FHLKHLSTELIS---QQLQLILKDEQLDFESQAVDILAKAARGSMRDALSLLDQAIAGCS 229 Query: 234 -KIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 ++ +S + L+ +Q+YALQ +Q +A++ S KI+ +E Sbjct: 230 TQLCASDVKMLLGYTQQDYALQLLQALAEQNASMLLKISHQVSLE 274 >gi|257081677|ref|ZP_05576038.1| DNA polymerase III delta prime subunit [Enterococcus faecalis E1Sol] gi|256989707|gb|EEU77009.1| DNA polymerase III delta prime subunit [Enterococcus faecalis E1Sol] Length = 324 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A H+ C+ V Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHIF-----------------CTNLV 66 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 67 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 126 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LEEP ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 127 ADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 183 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 184 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 243 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 244 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 299 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 300 QKWTANVSWQNV 311 >gi|218233931|ref|YP_002364873.1| DNA polymerase III subunits gamma and tau [Bacillus cereus B4264] gi|228956463|ref|ZP_04118261.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pakistani str. T13001] gi|229039927|ref|ZP_04189693.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676] gi|229107708|ref|ZP_04237346.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15] gi|229148431|ref|ZP_04276689.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550] gi|218161888|gb|ACK61880.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus B4264] gi|228635040|gb|EEK91611.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550] gi|228675748|gb|EEL30954.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15] gi|228727417|gb|EEL78608.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676] gi|228803220|gb|EEM50040.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pakistani str. T13001] Length = 562 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|30018295|ref|NP_829926.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC 14579] gi|229125539|ref|ZP_04254573.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4] gi|29893835|gb|AAP07127.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579] gi|228657923|gb|EEL13727.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4] Length = 562 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228937325|ref|ZP_04099973.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970211|ref|ZP_04130872.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976781|ref|ZP_04137195.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407] gi|228782943|gb|EEM31107.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407] gi|228789512|gb|EEM37430.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822350|gb|EEM68330.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937815|gb|AEA13711.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar chinensis CT-43] Length = 562 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|297616247|ref|YP_003701406.1| DNA polymerase III subunits gamma and tau [Syntrophothermus lipocalidus DSM 12680] gi|297144084|gb|ADI00841.1| DNA polymerase III, subunits gamma and tau [Syntrophothermus lipocalidus DSM 12680] Length = 517 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ P + G E + L GR+ HA LF G +G GK ++ +L Sbjct: 22 RSLRPQRFDEVVGQEQTVRALRNAVQQGRVSHAYLFCGPRGTGKTSVA-----KILAKAV 76 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PV + +PC+ +AS + D + + + N +DEIR +R Sbjct: 77 NCVEPV---DGEPCNRCASCVDIASGSFMDVIEIDAASNR---------GIDEIRDLREK 124 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +V +ID V + A NALLK+LEEPP+ V+F+L + I +TI SRC Sbjct: 125 VRMMPAQGKTKVYIIDEVHMLTTEAFNALLKTLEEPPESVVFVLATTEPQRIPATILSRC 184 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKIL 228 F LS+ + + L+ + + G +S+ +++ A GS+ + IL Sbjct: 185 QRYNFRRLSQTEILERLKTVAQTQGIESEEKALEVIARRATGSMRDGLSIL 235 >gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 562 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM 12042] gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM 12042] Length = 613 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 21/246 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L ++ HA LF G +G GK T+ + + D Sbjct: 8 RTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIA-KLLAKAVNCED 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 AP C S Q +H D + + + N G VDE+R + + Sbjct: 67 QQNAPCNQCR----SCLAIQQGNHP--DIVEIDAASN--NG-------VDEVRELIEKVK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V M+ A NALLK+LEEPP V+FIL + +L TI SRC Sbjct: 112 YAPLEGRYKVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQR 171 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ + +N + LEQ I D V A G + A+ I+ C ++ Sbjct: 172 YDFSKVGQNEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMD-QCIAYAQNH 230 Query: 240 IDLIHI 245 I H+ Sbjct: 231 ITAAHV 236 >gi|257452707|ref|ZP_05618006.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. 3_1_5R] gi|317059248|ref|ZP_07923733.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R] gi|313684924|gb|EFS21759.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R] Length = 478 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V N Sbjct: 7 RKYRPASFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSV--NCL 64 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 K C + C F + D + + + N +DEIR ++ + Sbjct: 65 APKEDGEACGVCENCLSF----QEGSFLDLIEIDAASNR---------GIDEIRLLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEPDKILPTIISRCQ 171 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +LS N L L Q + + ++ + A+ GS+ AI IL Sbjct: 172 RYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILE 222 >gi|146298746|ref|YP_001193337.1| DNA polymerase III gamma/tau subunits-like protein [Flavobacterium johnsoniae UW101] gi|146153164|gb|ABQ04018.1| DNA polymerase III gamma/tau subunits-like protein [Flavobacterium johnsoniae UW101] Length = 382 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 39/220 (17%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL------------- 59 ++ G + I+ L + SGR+ HA LF G +G G + YA ++L Sbjct: 5 QILGQDYIKSHLIKSASSGRIPHAQLFIGPEGSGTLSTAIAYAQYILCNNTGNENENGND 64 Query: 60 ------QN---PD----FSKAPVRMCNPDPCS--------PFVKQMASHALHDFLYLSYS 98 QN PD + P S F+++M L D+ Y Sbjct: 65 SCNLKFQNLSHPDLHFIYPTVTTEDVKTKPKSLDFIQDWRTFIQEMPYGGLFDW-YKILG 123 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K G+ I V++ + + LSL + G +++++I D MN A+N LLK LEEP Sbjct: 124 VQNKQGE----IRVEDAQEVLKSLSLKSYEGGYKIMIIWMADKMNIAASNKLLKLLEEPS 179 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 K +FILIS I+ TIRSRC I FN L E + +AL Sbjct: 180 DKTIFILISENEEDIIQTIRSRCQVIHFNGLPEKVIAEAL 219 >gi|229142828|ref|ZP_04271272.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24] gi|228640642|gb|EEK97028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24] Length = 562 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Ames] gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. 'Ames Ancestor'] gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Sterne] gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis str. A2012] gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227812696|ref|YP_002812705.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229604772|ref|YP_002864674.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. CNEVA-9066] gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Western North America USA6153] gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Kruger B] gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Vollum] gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Australia 94] gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str. Ames] gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. 'Ames Ancestor'] gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. Sterne] gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] Length = 562 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228905819|ref|ZP_04069718.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 200] gi|228853827|gb|EEM98585.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 200] Length = 562 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|218895159|ref|YP_002443570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842] gi|228898776|ref|ZP_04063060.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] gi|228963120|ref|ZP_04124291.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar sotto str. T04001] gi|218541669|gb|ACK94063.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842] gi|228796576|gb|EEM44013.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar sotto str. T04001] gi|228860868|gb|EEN05244.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. A1055] gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228918973|ref|ZP_04082354.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840688|gb|EEM85948.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|325954673|ref|YP_004238333.1| DNA polymerase III gamma/tau subunits-like protein [Weeksella virosa DSM 16922] gi|323437291|gb|ADX67755.1| DNA polymerase III gamma/tau subunits-like protein [Weeksella virosa DSM 16922] Length = 376 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 23/191 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDP--CSPFVKQMA 85 GR+ HA LF +G+G L YA H+L ++ V + +PD P+ K A Sbjct: 23 GRISHAQLFIAPEGVGALPLAIAYAQHILCPDSTASCTQKVVHLQHPDLHFSYPYNKVSA 82 Query: 86 SHALHDF------LYLSYSLNPKTGKW------------RTVITVDEIRRIRYFLSLTAN 127 S H L+ ++ L G + + +I V E I L+L + Sbjct: 83 SDGQHPVATKYIGLWRNFVLENPYGNYSDWMKFLGIEKKQGIINVHEANDIIKRLTLNSY 142 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++V++I D MN +AAN LLK +EEPPQ+ +FILI+ IL TI SRC + Sbjct: 143 EGGYKVMIIWHADLMNEDAANKLLKVIEEPPQRTIFILIAEKQDAILPTILSRCQVVNIP 202 Query: 188 SLSENNLYKAL 198 L++ + K L Sbjct: 203 HLTDAAVEKYL 213 >gi|42522598|ref|NP_967978.1| DNA polymerase III delta' subunit [Bdellovibrio bacteriovorus HD100] gi|39575130|emb|CAE78971.1| DNA polymerase III delta' subunit [Bdellovibrio bacteriovorus HD100] Length = 314 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 26/232 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++ K + + + +G+ LF G GIGK A +L + R C Sbjct: 8 VLGHQETIKKMVESFENGKPGQTFLFVGPGGIGKKLTAMGLAQALL-----CPSSPRGCG 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P + S H+ L L + P I +++ + + FLSL + TG RV Sbjct: 63 KCPSCFRI----SQGSHEGLKL---IAPNGAN----IKMEQAKEVLEFLSLKSLTGN-RV 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I+ID +N AAN+LLK+LEEPP+ F LI+ + IL TIRSR ++F L++ + Sbjct: 111 IVIDQAQTLNPQAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFRPLTQED 170 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 L K ++K W K AA GS + ++ ++ ++L+ + Sbjct: 171 LGK---RVKAPAWALK------AAGGSFEKLAQLQDGPEQEVREKAVELLTL 213 >gi|88859587|ref|ZP_01134227.1| putative DNA polymerase III delta' subunit [Pseudoalteromonas tunicata D2] gi|88818604|gb|EAR28419.1| putative DNA polymerase III delta' subunit [Pseudoalteromonas tunicata D2] Length = 302 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 14/156 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++HHALL +G QGIGK T+ AG +L + C C Q SH D Sbjct: 21 KLHHALLLQGVQGIGKQTMAVHLAGALLCPNQQNLTACGQCKS--CHLLAAQ--SHP--D 74 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +L L G + I VDE+R+I F +A +V++++ D M AANALL Sbjct: 75 YLVL--------GHEQKTIGVDEVRKIADFCQTSAGQRGAKVVVVNDADLMTTAAANALL 126 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 K+LEEP IL+S + + +T+ SRC + + Sbjct: 127 KTLEEPANNRFLILVSAQAERLPATVLSRCSQVTLS 162 >gi|73666904|ref|YP_302920.1| ATPase [Ehrlichia canis str. Jake] gi|72394045|gb|AAZ68322.1| ATPase [Ehrlichia canis str. Jake] Length = 296 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 29/153 (18%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGKATL + +A ++ Q+P N + C+P D L ++ Sbjct: 24 LLYGNKGIGKATLAYNFAQYLTQSP----------NSNYCNP-----------DLLIIND 62 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + +I +++IR I+ FL LT +R+++ID +D + NA NA+LK LEE Sbjct: 63 N--------EEIIGIEKIRNIKNFLYLTTARFKYRIVIIDSIDSLTINAINAMLKILEET 114 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P + ILISH + IRSRC ++ + L+ Sbjct: 115 PTNSIIILISHNLHEVPVVIRSRCFTLGLSDLN 147 >gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|197301952|ref|ZP_03167016.1| hypothetical protein RUMLAC_00674 [Ruminococcus lactaris ATCC 29176] gi|197299020|gb|EDY33556.1| hypothetical protein RUMLAC_00674 [Ruminococcus lactaris ATCC 29176] Length = 337 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 24/224 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++I K++ + + HA + GE+G GK L +A LQ D R N Sbjct: 13 VVGHKNIIKYIESAVQADAVSHAYILNGERGSGKKLLANLFAMS-LQCQD------RDEN 65 Query: 74 PDPCSPFVKQMASHALH----DFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANT 128 + C Q ALH D + +S+ P T I+VD+IR+ + + + + Sbjct: 66 GEACGKC--QSCKQALHGNQPDIVRVSHE-KP------TTISVDDIRQQVNNDIVIKPYS 116 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++ +I D M+ A NALLK++EEPP+ + +L++ + +L TIRSRC+ +K + Sbjct: 117 SKYKIYIIPEADLMSVQAQNALLKTIEEPPEYAVIMLLTENAEVLLPTIRSRCVMMKLRN 176 Query: 189 LSENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + + + K L EQ++I D K D A G++ +AI + + D Sbjct: 177 IKDQLVKKYLMEQMEI--PDYKADVCVAFAQGNMGKAIMLANSD 218 >gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787] gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787] Length = 519 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I K L + R+ HA LF G +G GK ++ +A V Sbjct: 8 RKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAYLFCGTRGTGKTSVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +P +C D C K ++S + + + + N VD IR IR ++ Sbjct: 68 VNGSPCGVC--DSC----KAISSGTSMNVIEIDAASNN---------GVDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + L L I + +V AA GS+ A+ IL D+ I+ Y Sbjct: 173 YDFKRITIDTIAARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSIL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis CI] gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar anthracis str. CI] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|220932911|ref|YP_002509819.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii H 168] gi|219994221|gb|ACL70824.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii H 168] Length = 588 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P L G + + L SGR+ HA LF G +G GK + F A + + Sbjct: 8 RKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAMALNCIHG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + C K + D + + + N +DEIR +R Sbjct: 68 P--TTEPCGQC--ENCRKIQKGQSI----DVIEIDAASNR---------GIDEIRELREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N G ++V +ID V + + A NALLK+LEEPP+KV+FIL + +++TI SRC Sbjct: 111 VKFYPNEGEYKVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRC 170 Query: 182 LSIKFNSL 189 F+ L Sbjct: 171 QRFDFSLL 178 >gi|213971681|ref|ZP_03399788.1| DNA polymerase III, delta prime subunit [Pseudomonas syringae pv. tomato T1] gi|213923566|gb|EEB57154.1| DNA polymerase III, delta prime subunit [Pseudomonas syringae pv. tomato T1] Length = 352 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SP 79 E Q + HA L G GIGK L R +L +AP + C S Sbjct: 33 ESLWQQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLL-----CRAPEGLEACGHCKSC 87 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + SH + Y L P+ I VD++R + F+ TA G +V++++PV Sbjct: 88 LLLVAGSHPDN------YVLEPEEAD--KPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPV 139 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +L+SH +L T++SRC+ Sbjct: 140 EAMNVNAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCV 182 >gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC 10987] gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC 10987] gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|229074083|ref|ZP_04207132.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18] gi|229094743|ref|ZP_04225751.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29] gi|229113697|ref|ZP_04243134.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3] gi|228669763|gb|EEL25168.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3] gi|228688681|gb|EEL42551.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29] gi|228709046|gb|EEL61170.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|261381179|ref|ZP_05985752.1| DNA polymerase III, delta' subunit [Neisseria subflava NJ9703] gi|284795996|gb|EFC51343.1| DNA polymerase III, delta' subunit [Neisseria subflava NJ9703] Length = 326 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 +A LF G++ GK R+ L ++P P C C F + +H DF Sbjct: 22 NAWLFTGKENTGKTEFA-RFVAQALLCESPKSGHEPCGECAS--CHLFSQN--THP--DF 74 Query: 93 LYLSYSLNPKTGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 Y L P+ + + I +D +R I + LTA G RV+++ P + MN A Sbjct: 75 ----YELTPEIPEGEAIGRKLLQIKIDAVRDIVENIYLTAVRGGLRVVLVHPAESMNTQA 130 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 AN LLK+LEEPPQ V+F+L++HA +L TI+SRC + S + L Q Sbjct: 131 ANGLLKALEEPPQHVVFLLVTHARDKLLPTIKSRCRQMVLPSPTHEQAAAYLRQ 184 >gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1] gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1] Length = 504 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L] gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|331703064|ref|YP_004399751.1| DNA polymerase III subunits gamma/tau [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801619|emb|CBW53772.1| DNA polymerase III gamma tau subunits [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 648 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + GH +I++ L + R++HALLF G++G GK ++ +A + Sbjct: 10 RTYRPKDFNSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTI----- 64 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N C K + L D + + + N VDEIR I+ Sbjct: 65 ---NCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNN---------GVDEIREIKNS 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 113 VSTLPLNSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRC 172 Query: 182 LSIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 173 QIFNFTKIDKNSLKNRLQ 190 >gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] Length = 558 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061] gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061] Length = 570 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 32/286 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPV-RMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K+PV CN D C K + + ++ D + + + N VDEIR IR Sbjct: 64 CEKSPVSEPCNECDAC----KGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ ++++ + + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 -----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 ID + + Q + Q+A+ + Q+ +A D L E + Sbjct: 227 FSGEQLTIDDALLITGAVSQQFISQLAEAIFDQNIAVALDTLNELL 272 >gi|229100809|ref|ZP_04231627.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28] gi|228682616|gb|EEL36675.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|301320577|gb|ADK69220.1| DNA polymerase III, subunit gamma and tau [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 648 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + GH +I++ L + R++HALLF G++G GK ++ +A + Sbjct: 10 RTYRPKDFNSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTI----- 64 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N C K + L D + + + N VDEIR I+ Sbjct: 65 ---NCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNN---------GVDEIREIKNS 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 113 VSTLPLNSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRC 172 Query: 182 LSIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 173 QIFNFTKIDKNSLKNRLQ 190 >gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|78043423|ref|YP_361464.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus hydrogenoformans Z-2901] gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus hydrogenoformans Z-2901] Length = 511 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I K L + ++ HA LF G +G GK T VL Sbjct: 7 RKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTT-----TAKVLAKAV 61 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV +PC+ P + + +L + + + N +DEIR +R Sbjct: 62 NCEHPVE---GEPCNQCPSCIGINNQSLLNVFEIDAASNR---------GIDEIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L G ++V +ID V + A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 IKLVPAQGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL 201 F +S +++ L+ + Sbjct: 170 QRFDFKRISTKTIWEHLKNI 189 >gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis str. Al Hakam] gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al Hakam] gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|42560608|ref|NP_975059.1| DNA polymerase III gamma-tau subunits [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492104|emb|CAE76701.1| DNA polymerase III gamma-tau subunits [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 652 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + GH +I++ L + R++HALLF G++G GK ++ +A + Sbjct: 14 RTYRPKDFNSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTI----- 68 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N C K + L D + + + N VDEIR I+ Sbjct: 69 ---NCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNN---------GVDEIREIKNS 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 117 VSTLPLNSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRC 176 Query: 182 LSIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 177 QIFNFTKIDKNSLKNRLQ 194 >gi|86157738|ref|YP_464523.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774249|gb|ABC81086.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 370 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 20/231 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ L E L G +HHA LF G +G GKA N + +A Sbjct: 7 PMPFSELIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAALLL--AQAANCEGGQA 64 Query: 68 PVRMCNPDPCS---PFVKQMASHALH-DFLYLSYSLN-PKTGKWRTV--------ITVDE 114 DPC P K LH D + L+ K G+W I VD+ Sbjct: 65 GPGGLREDPCGACGPCRK--IERGLHPDVVVLAEERTMAKAGRWEPKSGRAPSKDIVVDQ 122 Query: 115 IRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +R + + L++ G R ++IDP D MN A NALLK+LEEPP+ +L++ + + Sbjct: 123 VRDLVDHRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDAL 182 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 L TIRSRCL + F L + + L++ + +++ + GS+ RA Sbjct: 183 LPTIRSRCLRVSFRPLPADAVAARLQEEGVPAEEAR--VAAALSGGSLGRA 231 >gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena ATCC 35185] gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena ATCC 35185] Length = 691 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 27/248 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G + + LS +GR+ HA LF G +G GK + A + ++ + Sbjct: 35 RQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTS----TAKILAKSLN 90 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P+PC ++A D + + N +DE+R +R Sbjct: 91 CEKGP----TPEPCGVCKNCTKIADGTALDVFEIDAASNRG---------IDEMRDLREK 137 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V + A NALLK+LEEPP V+FIL + + +TI+SRC Sbjct: 138 VKFTPAEGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRC 197 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCD 233 F ++ E L +++KI + A G + A+ +L D D Sbjct: 198 QRFDFRRITVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGD 257 Query: 234 KIISSYID 241 + ++ ++ Sbjct: 258 TLTAACVE 265 >gi|229083335|ref|ZP_04215695.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44] gi|228699982|gb|EEL52607.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44] Length = 562 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S +++ + L Sbjct: 171 QRFEFRKISVHDIVERL 187 >gi|325846695|ref|ZP_08169610.1| DNA polymerase III, subunit gamma and tau [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481453|gb|EGC84494.1| DNA polymerase III, subunit gamma and tau [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 580 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 130/301 (43%), Gaps = 46/301 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E + L SG++ HA LF GE+G GK T +A + NP Sbjct: 7 REYRPQKFSDVLGQERVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCLNP 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +P +C + C K + + D + + + N + +D+IR ++ + Sbjct: 67 -IDSSPCGIC--ENC----KSIEEESTMDVVEMDAASNRR---------IDDIRNLKETV 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 111 VYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRVQ 170 Query: 183 SIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 +FN + + L I D +D + A G++ A+ IL D+++S Sbjct: 171 KFEFNKIGRDDIIKQIDIILNDRNISMEDEAKDLIVKKAKGAMRDALSIL----DQVLS- 225 Query: 239 YIDLIHIPRQEYALQKMQQI------------ADELLSQDQKIAFDFLIEFILKEICKSA 286 I + + LQ ++ I D +LS +QK + + L F LKE K Sbjct: 226 ------IDKDNFLLQDVENILGVVDFYSLDKLVDNILSYNQKDSLEIL--FKLKENGKDD 277 Query: 287 K 287 + Sbjct: 278 R 278 >gi|228995415|ref|ZP_04155086.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17] gi|229003029|ref|ZP_04160887.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4] gi|228758229|gb|EEM07416.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4] gi|228764341|gb|EEM13217.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17] Length = 562 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKTI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S +++ + L Sbjct: 171 QRFEFRKISVHDIVERL 187 >gi|146282955|ref|YP_001173108.1| DNA polymerase III subunit delta' [Pseudomonas stutzeri A1501] gi|145571160|gb|ABP80266.1| DNA polymerase III, delta prime subunit [Pseudomonas stutzeri A1501] gi|327481306|gb|AEA84616.1| DNA polymerase III subunit delta' [Pseudomonas stutzeri DSM 4166] Length = 328 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 30 SGRMHHA--LLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNP-DPCSPFVKQMA 85 +GR HA L G GIGK L + +L Q P R C C Q Sbjct: 16 AGRAQHAHAYLLHGPAGIGKRLLAEQLMALLLCQRP----VEARACGECKACQLLAAQ-- 69 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 +H H Y L P+ I VD++R + F++ TA G +VI+++P + MN N Sbjct: 70 THPDH------YVLEPEEVD--KAIRVDQVRDLVGFVTQTAQLGGRKVILLEPAEAMNLN 121 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 AANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 122 AANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|195953707|ref|YP_002121997.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp. Y04AAS1] gi|195933319|gb|ACG58019.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp. Y04AAS1] Length = 421 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 39/247 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P + L G E L + ++HHA +F G +G GK T R VL N Sbjct: 8 RKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTA-RIFAKVLNCLN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C P + + D + + + N +DEIR +R Sbjct: 67 PQEGE-PCNAC------PNCQAIEKGTFVDLIEMDAASNR---------GIDEIRAVREG 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S G ++V +ID + + A NALLK++EEPP ++FIL + IL TI+SRC Sbjct: 111 ASYLPMQGKYKVYIIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRC 170 Query: 182 LSIKFNSLSENNLY----------------KALEQLKIMGWDSKRDFVKI----AAYGSV 221 + F+ S+ N+ +AL+ L + DS RD + + YG+ Sbjct: 171 QKLVFSRASKENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNN 230 Query: 222 ARAIKIL 228 I I+ Sbjct: 231 KVTIDIV 237 >gi|206895302|ref|YP_002246820.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter proteolyticus DSM 5265] gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter proteolyticus DSM 5265] Length = 522 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L++ + ++ HA LF G +G GK + +A + Sbjct: 5 RKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNCETG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P CN + + H+L D + + + N VDEIR +R + Sbjct: 65 ITSKP---CNECESCKLINE--GHSL-DVIEIDAASNR---------GVDEIRELRERVK 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID + R A NALLK+LEEPP+ V+FIL + I T+ SRC Sbjct: 110 YRPAQSRYKVYIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQR 169 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 +F L+ + +++ LE + K G+ +R+ +++ A G+V A+ +L Sbjct: 170 FRFKKLTSDEVFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLE 219 >gi|313108145|ref|ZP_07794280.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa 39016] gi|310880782|gb|EFQ39376.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa 39016] Length = 328 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ + HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRAQHAHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KSIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|238022074|ref|ZP_04602500.1| hypothetical protein GCWU000324_01979 [Kingella oralis ATCC 51147] gi|237866688|gb|EEP67730.1| hypothetical protein GCWU000324_01979 [Kingella oralis ATCC 51147] Length = 326 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 19/172 (11%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 HE + L+Q++ +A LF G+ G GK +A +L + P C Sbjct: 6 HETAWQQLTQHW--QNQPNAWLFTGKAGTGKTAFARHFAQALLCETPSEQHQACGQC--P 61 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPK-----TGKWRTV-ITVDEIRRIRYFLSLTANTG 129 C F++ +H DF Y+L P+ TG + + I +D +R I L+ ++ G Sbjct: 62 SCHLFLQ--GTHP--DF----YALQPEQPENDTGSRKLLQIKIDAVRAILEPLTQSSIRG 113 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV++I+P + MN AANALLK LEEPP+ V+F+LI+H +L TI+SRC Sbjct: 114 GRRVVLINPAESMNIQAANALLKMLEEPPEAVIFLLITHNRDQLLPTIKSRC 165 >gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187] gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187] gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L ++ HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|313906139|ref|ZP_07839488.1| DNA polymerase III, delta prime subunit [Eubacterium cellulosolvens 6] gi|313469026|gb|EFR64379.1| DNA polymerase III, delta prime subunit [Eubacterium cellulosolvens 6] Length = 335 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 23/270 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH D+ + G++ HA + GE+G GK L +A LQ P C Sbjct: 13 IIGHRDVVTHMQSAVKQGKVSHAYIIGGEKGSGKRLLATIFA-MTLQCEQKGIEPCGQCA 71 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 ++ S + D +Y+ + P + + +DEIR ++ +S+ ++ Sbjct: 72 S------CRKALSGSQPDIIYVHHE-KPNS------VGIDEIREQVVGDVSIRPYESRYK 118 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID M A NALLK++EEPP+ + IL++ +L TIRSRC++++ +++ Sbjct: 119 VYIIDDAALMTPQAQNALLKTIEEPPEYAIIILLADNPEALLPTIRSRCVTLRLKPVTDE 178 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA 251 + + L QL + D K + + A G++ RA +I + + + S + + + ++ + Sbjct: 179 EMKEYLMTQLHV--PDYKAEVMASFAQGNIGRAKRIA--ESPEFMESVENAVRMMKRSKS 234 Query: 252 LQ--KMQQIADELLSQDQKIAFDFLIEFIL 279 L +M + EL Q Q + +DF+ F+L Sbjct: 235 LAVYEMIEAVKELAGQRQGV-YDFMDVFLL 263 >gi|228989232|ref|ZP_04149226.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM 12442] gi|228770507|gb|EEM19077.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM 12442] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQNFEDVVGQKHVTKTLQNAILQEKASHAYLFSGPRGTGKTTIAKVFAKTI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S +++ + L Sbjct: 171 QRFEFRKISVHDIVERL 187 >gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus SAFR-032] gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus pumilus SAFR-032] Length = 570 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 32/286 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPV-RMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K+PV CN D C K + + ++ D + + + N VDEIR IR Sbjct: 64 CEKSPVSEPCNECDAC----KGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ ++++ + + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 -----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 ID + + Q + Q+A+ + Q+ +A D L E + Sbjct: 227 FSGEQLTIDDALLITGAVSQQFISQLAEAIFDQNIAVALDTLNELL 272 >gi|330722495|gb|EGH00322.1| DNA polymerase III delta prime subunit [gamma proteobacterium IMCC2047] Length = 331 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 15/171 (8%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 ++ ++ L+QY + HALL G G GK A +L + C C Sbjct: 12 DNWQRLLNQYQ-QNHLPHALLLSGHAGTGKRLFAQALAESLLCSQPVDGKACGQCKG--C 68 Query: 78 SPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 + S H DF+ +S T + VI VD+IR ++ F TA ++VI++ Sbjct: 69 -----HLLSAGTHPDFIEIS------TEEKSRVIKVDQIRALKTFCGKTAQLNGYKVIIL 117 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 P D +N ++ANALLK LEEP +FIL+S I++TIRSRC + F Sbjct: 118 QPADCLNISSANALLKDLEEPQPNTVFILVSDQPAQIVATIRSRCHQLDFG 168 >gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] Length = 533 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 23/208 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + ++ E I + L + R+ HA LF G +G+GK +L A + Sbjct: 5 VLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKT----GKWRTVITVDEIR 116 + P PC +A + L ++ +P G T +VD+IR Sbjct: 63 --NCVNGPTTT----PC---------NACSNCLEITAGTSPDVIEIDGASNT--SVDDIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ L A++ +++ +ID V +++NA NALLK+LEEPP V+FI + +L T Sbjct: 106 ELQRELLYPASSSNYKIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIM 204 I SRC F + ++ + L+++ ++ Sbjct: 166 IISRCQRYDFKRIPIASIVQRLQEISVL 193 >gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|154684538|ref|YP_001419699.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens FZB42] gi|154350389|gb|ABS72468.1| DnaX [Bacillus amyloliquefaciens FZB42] Length = 563 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 149/344 (43%), Gaps = 49/344 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQQFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVE----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKI-------- 227 F ++ + + EQLK+ + D + AA G + A+ + Sbjct: 171 QRFDFKRITSKAIVGRMKTIVDAEQLKV--EEGALDIIASAADGGMRDALSLLDQAVSFS 228 Query: 228 ---LHYDCDKIISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIE--- 276 L D +I+ + +I + AL + Q + +ELL Q + A LIE Sbjct: 229 GEELSVDDALLITGAVSQHYIGKLASALHRKQVSEALETLNELLQQGKDAA--KLIEDMI 286 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 F +++ A L G LE+ ++ + + +L + A ++Y + Sbjct: 287 FYFRDMLLYQAAPGLEGVLEKV-KVDETFRNLSGDIPAPALYEM 329 >gi|190573045|ref|YP_001970890.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas maltophilia K279a] gi|190010967|emb|CAQ44576.1| putative DNA polymerase III subunit Tau [Stenotrophomonas maltophilia K279a] Length = 677 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 19/196 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S DPC + A D L + + N TG VD++R + Sbjct: 65 EQGTSA--------DPCGQCAACLDIDAGRYIDLLEIDAASN--TG-------VDDVREV 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ Sbjct: 108 IENAQYMPSRGKYKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 Query: 179 SRCLSIKFNSLSENNL 194 SRCL L E+ + Sbjct: 168 SRCLQFNLKRLDEDQI 183 >gi|255021192|ref|ZP_05293242.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] gi|254969307|gb|EET26819.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] Length = 572 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L SGR+HHA LF G +G+GK TL A + Sbjct: 22 RRWRPQRFEDFVGQEAVVAALRHGLDSGRVHHAFLFTGTRGVGKTTLARLLAKSLNCEEG 81 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P C+ + +A+ D L + + + VDE R + + Sbjct: 82 VSSRPCGECS------ACRSIANGNFVDLLEVDAASRTR---------VDETRELLDNVQ 126 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 127 YAPTVGRYKVYLIDEVHMLSSHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 186 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ L + + L + I D+ + + AA GS+ A+ +L Sbjct: 187 LQLRRLEPARIRERLRTIVDAEGIAAEDTALELLSHAADGSLRDALSLL 235 >gi|166033190|ref|ZP_02236019.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC 27755] gi|166027547|gb|EDR46304.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC 27755] Length = 522 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I + L + R+ HA LF G +G GK T+ +A V Sbjct: 5 RKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + N VD IR IR ++ Sbjct: 65 VDGSPCGEC------AVCKAIAAGNSMNVIEIDAASNN---------GVDNIREIREEVA 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 110 YRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQR 169 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 F +S + L++L GWD + V+ A GS+ A+ +L Sbjct: 170 YDFKRISIETISARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLL 218 >gi|153813525|ref|ZP_01966193.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174] gi|149830396|gb|EDM85488.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174] Length = 537 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L+ + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDNFEDVKGQDHIVTTLTNQINANRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV N PC+ A A + G VD IR IR ++ Sbjct: 63 NCEHPV---NGSPCNECEMCKAIQAGTSMNVIEIDAASNNG-------VDNIREIREEVT 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKAL-EQLKIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ +S + + L E LK+ G +++ +V A GS+ A+ +L D+ I+ Y Sbjct: 173 YDFHRISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus weihenstephanensis KBAB4] gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus weihenstephanensis KBAB4] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|317473409|ref|ZP_07932703.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316899059|gb|EFV21079.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 335 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 30/228 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V GH+ I + + +G++ HA L GE G GK TL +A +L Sbjct: 7 KSFDNV-----VGHKKIIQHFEEAIQTGQISHAYLLNGEDGSGKMTLAKAFAKALLCEKH 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 C C+P +Q + D +Y+++ + I VDEIR+ I + Sbjct: 62 ------EGCGQ--CTP-CRQADTGNHPDLIYITHE--------KYEIRVDEIRQGINETI 104 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + +++ ++D D MN A NALLK+LEEPP+ + +L+++ +L TI SRC+ Sbjct: 105 DIKPYSSNYKIYIVDDADRMNVGAQNALLKTLEEPPEYAVILLLTNNKDRLLETILSRCV 164 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA---AYGSVARAIKI 227 + ++ E+ + L++ + D ++ A + G++ +A+ + Sbjct: 165 CMSLGTVPEDQIRDYLKE----HTQADEDMIEFAVSFSLGNLGKAVHV 208 >gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] Length = 562 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + HA LF G +G GK T+ +A + + Sbjct: 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|269215701|ref|ZP_06159555.1| DNA polymerase III delta subunit HolB [Slackia exigua ATCC 700122] gi|269131188|gb|EEZ62263.1| DNA polymerase III delta subunit HolB [Slackia exigua ATCC 700122] Length = 373 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 54/300 (18%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 AFD +Y G + +L + HA LF G G K T F +A +L+ + Sbjct: 4 AFDAIY-----GQPRVRAYLRSCVAQRCVSHAYLFTGVAGSNKETAAFAFAEEILKAHE- 57 Query: 65 SKAPVRMCNPDPCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 DP + +++ S H ++ L+P+ + VD++R + ++ Sbjct: 58 ---------DDPSAREDIRRRVSRRTHPDIH---HLSPEGAQG---YLVDQVRSVVADVT 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G ++ ++D VD M +AANA LK+LEEPP V+ IL+ + +IL TI SRC Sbjct: 103 LAPMQGARKIYIVDEVDRMGTSAANAFLKTLEEPPDDVVIILLGRTASSILPTIVSRCQV 162 Query: 184 IKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAY----------------- 218 + F ++ N L Q KI K AA+ Sbjct: 163 VPFRTIPANEAASILVQNVGCSDAEAKIAIQTCGGSVTKAAAFLRSSERGLFRQKVLTVL 222 Query: 219 GSVARA--IKILHYDCDKIISSYIDLIHIPRQ-----EYALQKMQQIADELLSQDQKIAF 271 S+ARA + +L Y D + SS L + R E + + +Q+ A + L+ QK A Sbjct: 223 ASLARADDLDVLDYAADLVTSSKAPLDEVQRDHARILEESAEYLQKSALKELAATQKRAL 282 >gi|296388547|ref|ZP_06878022.1| DNA polymerase III subunit delta' [Pseudomonas aeruginosa PAb1] Length = 328 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ + HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRAQHAHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|323701667|ref|ZP_08113339.1| DNA polymerase III, delta prime subunit [Desulfotomaculum nigrificans DSM 574] gi|323533440|gb|EGB23307.1| DNA polymerase III, delta prime subunit [Desulfotomaculum nigrificans DSM 574] Length = 336 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 22/264 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH +I + L R+ HA LF G QG+GK T+ +A +L + C Sbjct: 8 VIGHREIVQILKNAVQRDRVAHAYLFLGPQGVGKQTVARAFARVLLCDHPIDGDACGHCR 67 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +QMA H H L+ + P I +++IR + + +V Sbjct: 68 S------CQQMA-HDNHPDLHF---MEPAGAS----IKIEQIRELLRKVQFKPYQAERQV 113 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 M++ + M AAN LK+LEEP + +F+LISH +L TI SRC ++F LS Sbjct: 114 FMLEMAEAMTTEAANCFLKTLEEPGSQSVFLLISHRPYALLPTILSRCQQLQFRPLSNGE 173 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH-YDCDKIISSYIDLI-HIPRQEYA 251 + L + + + R +A GS+ RA+++ D + +DL+ IP Sbjct: 174 VAAGLMHVCGLEPEKARQLAPMAG-GSLGRAVQLAQGSDQWPARTKILDLVGRIPE---- 228 Query: 252 LQKMQQIA-DELLSQDQKIAFDFL 274 + K+Q + E LS D+ A ++L Sbjct: 229 MDKVQALGIAEELSADRAAAGEYL 252 >gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena ATCC 35185] gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena ATCC 35185] Length = 664 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 27/248 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G + + LS +GR+ HA LF G +G GK + A + ++ + Sbjct: 8 RQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTS----TAKILAKSLN 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P+PC ++A D + + N +DE+R +R Sbjct: 64 CEKGP----TPEPCGVCKNCTKIADGTALDVFEIDAASNRG---------IDEMRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V + A NALLK+LEEPP V+FIL + + +TI+SRC Sbjct: 111 VKFTPAEGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCD 233 F ++ E L +++KI + A G + A+ +L D D Sbjct: 171 QRFDFRRITVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGD 230 Query: 234 KIISSYID 241 + ++ ++ Sbjct: 231 TLTAACVE 238 >gi|15598157|ref|NP_251651.1| DNA polymerase III subunit delta' [Pseudomonas aeruginosa PAO1] gi|107102511|ref|ZP_01366429.1| hypothetical protein PaerPA_01003574 [Pseudomonas aeruginosa PACS2] gi|218890841|ref|YP_002439705.1| DNA polymerase III subunit delta' [Pseudomonas aeruginosa LESB58] gi|254235936|ref|ZP_04929259.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa C3719] gi|254241671|ref|ZP_04934993.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa 2192] gi|12644665|sp|P52024|HOLB_PSEAE RecName: Full=DNA polymerase III subunit delta' gi|9949059|gb|AAG06349.1|AE004722_5 DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa PAO1] gi|126167867|gb|EAZ53378.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa C3719] gi|126195049|gb|EAZ59112.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa 2192] gi|218771064|emb|CAW26829.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa LESB58] Length = 328 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ + HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRAQHAHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|308171911|ref|YP_003918616.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens DSM 7] gi|307604775|emb|CBI41146.1| DNA polymerase III (gamma and tau subunits) [Bacillus amyloliquefaciens DSM 7] gi|328551720|gb|AEB22212.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens TA208] Length = 563 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 49/344 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQQFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVE----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYD 231 F ++ + + EQLK+ + D + AA G + A+ +L + Sbjct: 171 QRFDFKRITSQAIVGRMKIIVDAEQLKV--EEGALDIIASAADGGMRDALSLLDQAVSFS 228 Query: 232 CDK-------IISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIE--- 276 D+ +I+ + +I + AL + Q + +ELL Q + A LIE Sbjct: 229 GDELAVDDALLITGAVSQHYIGKLASALHRKQVSEALETLNELLQQGKDAA--KLIEDMI 286 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 F +++ A L G LE+ ++ +++ L + A ++Y + Sbjct: 287 FYFRDMLLYQAAPDLEGVLEKV-KVDEMFRDLSGEIPAPALYEM 329 >gi|49089384|gb|AAT51677.1| PA2961 [synthetic construct] Length = 329 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ + HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRAQHAHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|329961750|ref|ZP_08299781.1| putative DNA polymerase III, delta' subunit [Bacteroides fluxus YIT 12057] gi|328531491|gb|EGF58331.1| putative DNA polymerase III, delta' subunit [Bacteroides fluxus YIT 12057] Length = 376 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 43/297 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E ++ L Q GR+ HA LF G G+GK L YA ++ Sbjct: 7 IIGQEAAKQRLVQEVQEGRIPHAQLFCGPAGVGKLPLALAYARYICCPAHTETDACGVCP 66 Query: 59 -------LQNPDF---------SKAP-VRMCNPDPCSPFVKQMASHALHD-FLYLSYSLN 100 L +PD +K+P V +CN F+ Q L + YLS+ L Sbjct: 67 SCVKWNKLVHPDVHFVFPIINKAKSPKVSVCN-----DFLPQWRQQLLTSPYFYLSHWLE 121 Query: 101 PKTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 + + I E I LSL ++ G ++V ++ + MN+ AN LLK LEEPP+ Sbjct: 122 DMGAENKQAQIFAQESDEIIRKLSLKSSEGSYKVTIVWQPEKMNQTCANKLLKLLEEPPE 181 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 K +F+L+S IL TI SR + E+++ +AL Q+K + A G Sbjct: 182 KTIFLLVSETPEMILPTILSRTQRFNIPKIEESHVAEAL-QMKYGVTAGDSTTIAHLANG 240 Query: 220 SVARAIKILHY--DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + + ++ L+ + Q +++M+Q +++L S ++ +FL Sbjct: 241 DFVKALETIHLNEESELFFNLFVSLMRLSYQR-KIREMKQWSEQLASIGRERQKNFL 296 >gi|256384320|gb|ACU78890.1| DNA polymerase III, gamma/tau subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385153|gb|ACU79722.1| DNA polymerase III, gamma/tau subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455309|gb|ADH21544.1| DNA polymerase III, gamma/tau subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 668 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + GH +I++ L + R++HALLF G++G GK ++ +A + Sbjct: 10 RTYRPKDFNSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTI----- 64 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N C K + L D + + + N G VDEIR I+ Sbjct: 65 ---NCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASN--NG-------VDEIREIKNS 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V +ID V + + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 113 VSTLPLNSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRC 172 Query: 182 LSIKFNSLSENNLYKALE 199 F + +N+L L+ Sbjct: 173 QIFNFTKIDKNSLKNRLQ 190 >gi|332045297|gb|EGI81490.1| DNA polymerase III subunit delta' [Lacinutrix algicola 5H-3-7-4] Length = 384 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 37/218 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPD--------- 63 + G + I+ L++ GR+ HA LF G +G G + YA ++L N D Sbjct: 6 IIGQQHIKNHLTKSADYGRIPHAQLFVGPEGSGTLPMAIAYAQYILCSNSDAENNNGNEA 65 Query: 64 -------FSKAPVRMCNPDPCSPFVKQ--MASHALHDF--------------LYLSYSLN 100 FS + P + VK+ +++H L ++ Y ++ Sbjct: 66 CNLKFKNFSHPDLHFAFPVTTNDKVKRHPVSNHFLEEWRELLNKQPYGNLFDWYKLLGVD 125 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 K G+ I VDE I L+L + G ++V++I + MN AAN LLK +EEPP K Sbjct: 126 NKQGQ----IGVDEAHDIVKSLTLKSYEGGYKVMLIWMAEKMNTQAANKLLKLIEEPPNK 181 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +FIL++ +I++TIRSRC + F L+E ++ AL Sbjct: 182 TVFILVTEDEESIINTIRSRCQILHFPPLAEVDIKNAL 219 >gi|315148723|gb|EFT92739.1| DNA polymerase III, delta' subunit [Enterococcus faecalis TX4244] Length = 316 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 37/312 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + + GR+ HA LFEG+ G GK G A HV C+ V Sbjct: 16 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVF-----------------CTNLV 58 Query: 82 KQMASHALHDFLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q + H+ + ++ + +P + I V++IR ++ S + +V +I Sbjct: 59 NQQPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQE 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M+ AAN+LLK LE+P ++L IL + + IL TI+SRC ++ F L + L + Sbjct: 119 ADKMSTGAANSLLKFLEDPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTL---I 175 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKIISSYIDLIHIPRQE---YA 251 ++L G K + S +A++I + +II + + + + Y Sbjct: 176 DRLIKQGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYV 235 Query: 252 LQKMQQIADELLSQDQKIAFDFLIEF---ILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +KM ++ E + Q ++FD L+ + +L+E + +A ++ E+A+++A I + Sbjct: 236 QKKMVKVFKE--KEQQALSFDLLMVYYRQLLEESVATQQAKKVTE--EQAERLALILKAR 291 Query: 309 VKRVHAFSMYNL 320 K S N+ Sbjct: 292 QKWTANVSWQNV 303 >gi|313890779|ref|ZP_07824404.1| DNA polymerase III, subunit gamma and tau [Streptococcus pseudoporcinus SPIN 20026] gi|313120880|gb|EFR43994.1| DNA polymerase III, subunit gamma and tau [Streptococcus pseudoporcinus SPIN 20026] Length = 560 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + + L Q SG++ HA LF G +G GK + +A + P C Sbjct: 16 EMVGQKVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC 75 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + + + +L D + + + N VDEIR IR + + ++ Sbjct: 76 --DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYK 120 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ +N Sbjct: 121 VYIIDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSIKQN 180 Query: 193 NLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ LE +I ++ D + A G + A+ IL Sbjct: 181 DISSHLAWILETEEIPYQEAALDLIARRAEGGMRDALSIL 220 >gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC 43541] gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC 43541] Length = 644 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P L G E I + LS+ SG+ HA LF G +G GK + A + + Sbjct: 41 RRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNCAEG 100 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C + C + ++ + D + + N +DEIR +R Sbjct: 101 PTLT--PCGVC--ESC----RSISDGSSMDVFEIDAASN---------RGIDEIRDLRES 143 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC Sbjct: 144 VKFAPTAGRYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRC 203 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ ++ + L + I + + + A G + A+ IL Sbjct: 204 QRYDFHRITVTEIRDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSIL 254 >gi|260584574|ref|ZP_05852320.1| DNA polymerase III, delta prime subunit [Granulicatella elegans ATCC 700633] gi|260157597|gb|EEW92667.1| DNA polymerase III, delta prime subunit [Granulicatella elegans ATCC 700633] Length = 318 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 29/207 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ HA LFEG QG+GK L A V Q D + P C+ + +++ Sbjct: 15 NRLGHAYLFEGMQGVGKRDLALFLAKLVFCQERDTHEEPCLHCD------YCRRIDEGNF 68 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + ++ G+ + VD++R ++ LS TA G+ +V +I VD + AAN+ Sbjct: 69 PDVMEVT-----PDGQ---TLKVDQMRELKQQLSKTAMEGHMKVCIIHDVDTLTTGAANS 120 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK LEEP +LF+L++ +L TI+SRC + F + L LE+ ++ Sbjct: 121 LLKFLEEPESSILFLLLTSRLSKVLPTIQSRCQIVHFATPVMETLTNQLEEAGVI----- 175 Query: 210 RDFVKIAAYGSVARAIKILHYDCDKII 236 SV+R + L D D+ + Sbjct: 176 ---------PSVSRLLATLTSDLDEAL 193 >gi|160893396|ref|ZP_02074182.1| hypothetical protein CLOL250_00946 [Clostridium sp. L2-50] gi|156864971|gb|EDO58402.1| hypothetical protein CLOL250_00946 [Clostridium sp. L2-50] Length = 330 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 18/221 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + GHEDI + + G++ + GE+G GK TL R L+ + P C Sbjct: 6 EIIGHEDIIQHFKRSIEMGKVSQGYIINGEEGSGKKTLT-RAIIKTLECEEGGTEPC--C 62 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 C KQM + D ++++ P VI+V+EIR ++ +++ + + Sbjct: 63 KCKSC----KQMDTDNQPDVTWVTHD-KP------NVISVEEIRDQVNKDITIKPYSSRY 111 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID +N NA NALLK++EEPP+ + L++ IL TI SRC+ + + E Sbjct: 112 KIYVIDDAQLLNANAQNALLKTIEEPPEYAIIFLLTSNIDKILPTIISRCIVLNIKPVRE 171 Query: 192 NNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 ++ L +LK+ K DF A G++ +AI++ D Sbjct: 172 RDVLDYLMNELKLPK--EKADFCMDFAQGNLGKAIRLATSD 210 >gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989] gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989] Length = 587 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 25/282 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + L R+ HA LF G +G GK ++ +A L + Sbjct: 8 RKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFA-KTLNCTN 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 AP +C + C +MA++ H D + + + N VDE+R + + Sbjct: 67 SQDAPCGVC--ENC-----KMAANGSHPDIIEIDAASNN---------GVDEVRNLIDKV 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V M A NALLK++EEPP V+FI + +L TI SRC Sbjct: 111 KYAPMQGKYKIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQ 170 Query: 183 SIKFNSLSENNL-YKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISS 238 FN +S N++ Y+ K G + +D + + A G + A+ IL C +S Sbjct: 171 RFDFNKVSVNDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILD-QCVAYCTS 229 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +ID+ I R+ Y + + I +L S K D I+ I K Sbjct: 230 HIDVNDI-RKIYGVITSEDIG-QLFSSIYKKDVDRFIKDIQK 269 >gi|194364635|ref|YP_002027245.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas maltophilia R551-3] gi|194347439|gb|ACF50562.1| DNA polymerase III, subunits gamma and tau [Stenotrophomonas maltophilia R551-3] Length = 681 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 19/196 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S DPC + A D L + + N TG VD++R + Sbjct: 65 EQGTSA--------DPCGQCAACLDIDAGRYIDLLEIDAASN--TG-------VDDVREV 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ Sbjct: 108 IENAQYMPSRGKYKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 Query: 179 SRCLSIKFNSLSENNL 194 SRCL L E+ + Sbjct: 168 SRCLQFNLKRLDEDQI 183 >gi|113461343|ref|YP_719412.1| DNA polymerase III subunits gamma and tau [Haemophilus somnus 129PT] gi|112823386|gb|ABI25475.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Haemophilus somnus 129PT] Length = 667 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS C R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSEVVGQEHILTALSNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +R +PC K + D + + + K V++ R + Sbjct: 63 ------NCIRGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPTQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +LSE + + LE Sbjct: 168 SRCMQFHLKALSEKQIAQHLE 188 >gi|310657422|ref|YP_003935143.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii DSM 519] gi|308824200|emb|CBH20238.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii] Length = 552 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L G + HA LF G +G GK + +A V Sbjct: 11 RIYRPTSFIDIVGQEQIISILKNQISEGSVSHAYLFSGGRGTGKTSTAKVFAKAV----- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + N +PC + D + + + N +VD IR +R + Sbjct: 66 ---NCIDPVNQEPCHKC--SVCVQGDMDIIEIDAASNN---------SVDNIRELRENVV 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T + G ++V +ID V +++ A NALLK+LEEPP V+FIL + I +T+ SRC Sbjct: 112 YTPSYGKYKVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFILATTEPQKIPATVLSRCQR 171 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS-- 237 F + +N + K L++L + + + + + G + A+ +L D+ I+ Sbjct: 172 FDFKKIDKNQIIARMIKILDELGLTYEEEAIELIAQKSDGGMRDALSLL----DQAIAYK 227 Query: 238 --SYIDLIHI 245 +Y +++H+ Sbjct: 228 ELTYQNVVHV 237 >gi|149922998|ref|ZP_01911416.1| DNA polymerase III subunits gamma and tau [Plesiocystis pacifica SIR-1] gi|149816119|gb|EDM75629.1| DNA polymerase III subunits gamma and tau [Plesiocystis pacifica SIR-1] Length = 393 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 23/224 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + LS+ R+HH L+F G +GIGKATL A + + +P C Sbjct: 14 VVGHGRVTAMLSRAIARSRLHHGLVFSGPRGIGKATLARGLACAL----TCAVSPAVGCG 69 Query: 74 P-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C ++M DF L GK RTV T R + + Sbjct: 70 QCDSC----RRMLCGLHTDFTVLEGQ-----GKSRTVAT-GPAREVALRVQHAPFEAAAH 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 VI+IDP D M+ AA ALLKS+EEP V ++L++ IL TI SRC++I +L+ Sbjct: 120 VIVIDPADRMHPAAAAALLKSIEEPRPGVHWVLLATNLHDILDTILSRCMTIPLEALNTE 179 Query: 193 NL-------YKALEQLKIMGWDSKRDFVKIA-AYGSVARAIKIL 228 + + L Q + + D +R + I+ A GS A+++L Sbjct: 180 DTRSVVDAELERLAQARGLEVDPRRRELAISLAGGSPGVALELL 223 >gi|170718500|ref|YP_001783712.1| DNA polymerase III subunits gamma/tau [Haemophilus somnus 2336] gi|168826629|gb|ACA32000.1| DNA polymerase III, subunits gamma and tau [Haemophilus somnus 2336] Length = 667 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS C R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSEVVGQEHILTALSNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +R +PC K + D + + + K V++ R + Sbjct: 63 ------NCIRGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPTQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +LSE + + LE Sbjct: 168 SRCMQFHLKALSEKQIAQHLE 188 >gi|302384470|ref|YP_003820292.1| DNA polymerase III, delta prime subunit [Clostridium saccharolyticum WM1] gi|302195098|gb|ADL02669.1| DNA polymerase III, delta prime subunit [Clostridium saccharolyticum WM1] Length = 329 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 18/233 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I++ L + S + HA + GE G+G+ +L +A +L S+ P C+ Sbjct: 7 IIGHERIKEHLQKAIESNHVSHAYILSGEAGMGRKSLANAFAMTLLCEKGKSE-PCMQCH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D ++L++ K G I VD++R +I + + + Y++ Sbjct: 66 A------CKQVMSGNHPDLVFLTHE---KPGS----IGVDDVREQIHDTIMIRPYSSYYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + M A NALLK++EEPP + +L++ L TI SRC+ + L ++ Sbjct: 113 IYIVDEAEKMTVQAQNALLKTIEEPPSYAVIMLLTTNQEAFLPTILSRCVQLTLKPLQDS 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 + L +G +SK + A G++ RAI + + +++ Y +LIH+ Sbjct: 173 VVKTYLSGSLGIG-ESKAEVYAAFARGNLGRAIHLASSEEFQLM--YTELIHM 222 >gi|162149236|ref|YP_001603697.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] gi|161787813|emb|CAP57411.1| putative DNA polymerase III tau subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 629 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 118/280 (42%), Gaps = 26/280 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ R + P L G + + L + GR+ HA + G +G+GK T R L Sbjct: 1 MLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTA-RIIARALN 59 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD + P DPC +A A L +TG VD++R I Sbjct: 60 CVGPDGTGGP----TADPCGVCANCVAILADRHPDVLEMDAASRTG-------VDDVREI 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 G +V +ID V ++RNA NALLK+LEEPP +V F+ + + T+ Sbjct: 109 IEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVL 168 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDK 234 SRC + +++L ++ + G + D + + AA GSV + +L D+ Sbjct: 169 SRCQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLL----DQ 224 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I+ + A +++AD L D+ FD L Sbjct: 225 AIAQG----SVEGDGAAPIGAERVADMLGLADRGRVFDLL 260 >gi|254521543|ref|ZP_05133598.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp. SKA14] gi|219719134|gb|EED37659.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp. SKA14] Length = 683 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 19/196 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 11 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 70 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S DPC + A D L + + N TG VD++R + Sbjct: 71 EQGTSA--------DPCGQCAACLDIDAGRYIDLLEIDAASN--TG-------VDDVREV 113 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V ++D V +++ A NALLK+LEEPP+ V F+L + + T+ Sbjct: 114 IENAQYMPSRGKYKVYLVDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 173 Query: 179 SRCLSIKFNSLSENNL 194 SRCL L E+ + Sbjct: 174 SRCLQFNLKRLDEDQI 189 >gi|71898714|ref|ZP_00680883.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731479|gb|EAO33541.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 330 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 18/207 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + +A VL ++ + C +Q+ + Sbjct: 33 AGHLGHGLLLCGPEGLGQRAVALAFADTVL-GKGLTEVARQRC---------RQLITAGT 82 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 83 HPDLHLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 142 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 ALLK+LEEP LIS + TIRSRC ++F L++AL L G Sbjct: 143 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFKL---PPLHEALAWLVAQGITE 199 Query: 209 KRDFVKI-AAYGSVARAIKILHYDCDK 234 K + AA G A++ L CD+ Sbjct: 200 KVAVEALDAARGHPGLAMQWL---CDE 223 >gi|313895047|ref|ZP_07828604.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral taxon 137 str. F0430] gi|312975942|gb|EFR41400.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral taxon 137 str. F0430] Length = 617 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P L G E I + LS+ SG+ HA LF G +G GK + + + Q Sbjct: 8 RRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNCAQG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + C + +A + D + + N +DEIR +R Sbjct: 68 PTLT--PCGQC--ESC----RAIADGSSMDVFEIDAASNRG---------IDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V + A NALLK+LEEPP VLFIL + + +TI+SRC Sbjct: 111 VKFAPTEGRCKIYIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ ++ + + L + I D + A G + A+ IL Sbjct: 171 QRYDFHRITVAEIRERLSYVCRESGIAANDDALSIIAAQADGGMRDALSIL 221 >gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri JV-V03] gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri JV-V03] Length = 602 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADRGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ +LL + AF+ + Sbjct: 231 KV--KYDDALKITG--YAAQEKIEQVLLDLLKGETSEAFEIV 268 >gi|118580086|ref|YP_901336.1| DNA polymerase III, delta prime subunit [Pelobacter propionicus DSM 2379] gi|118502796|gb|ABK99278.1| DNA polymerase III, delta prime subunit [Pelobacter propionicus DSM 2379] Length = 327 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I L + +G+ HA +FEG G G+ R L F A Sbjct: 6 VLGHERIVDILLRSLRTGKTAHAYIFEGPSGCGR-----RKTALALVQALFCGAGTN--- 57 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C P +++A+ D + +NP K I++ ++R ++ L++ Sbjct: 58 -DACGVCPSCRKVAAGNHADI----HLVNPLPDKRD--ISISQLRDVQRDLAMRPYEAPR 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +I+P D MN ++AN+ LK+LEEPP + ILI+ + +L TIRSRC ++F LS Sbjct: 111 AACIIEPADRMNTSSANSFLKTLEEPPGNAIIILITENADMLLPTIRSRCQLLRFAPLSP 170 Query: 192 NNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 + LE+ G DS + + GS+ RA+++ Sbjct: 171 EQIRLLLER---DGMDSATASLLAPLSDGSMQRALEL 204 >gi|116050963|ref|YP_790212.1| DNA polymerase III subunit delta' [Pseudomonas aeruginosa UCBPP-PA14] gi|115586184|gb|ABJ12199.1| DNA polymerase III, delta prime subunit [Pseudomonas aeruginosa UCBPP-PA14] Length = 328 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSP 79 + SQ + HA L G GIGK L +A +L Q P + A C C Sbjct: 9 QALWSQLGGRAQHAHAYLLYGPVGIGKRALAEHWAAQLLCQRPAAAGA----CGE--CK- 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +A+ D+ + L P+ + I VD++R + F+ TA G +V++++P Sbjct: 62 ACQLLAAGTHPDY----FVLEPEEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPA 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + MN NAANALLKSLEEP + +LISH +L TI+SRC+ Sbjct: 116 EAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCV 158 >gi|291613732|ref|YP_003523889.1| DNA polymerase III, subunits gamma and tau [Sideroxydans lithotrophicus ES-1] gi|291583844|gb|ADE11502.1| DNA polymerase III, subunits gamma and tau [Sideroxydans lithotrophicus ES-1] Length = 537 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 6 VLARKWRPRNFAQLAGQEHVVQALTNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C+ ++ S D + L + N + VD +R + Sbjct: 66 ETGVTATPCGVCGA--CT----EIDSGRFVDLIELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 SALYAPTSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPSHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L +L L Q I + V AA GS+ A+ +L Sbjct: 171 CLQFNLKQLPPALILTHLQYVLGQENIPFEIGALNLVARAAQGSMRDALSLL 222 >gi|213962935|ref|ZP_03391195.1| putative DNA polymerase III subunit delta [Capnocytophaga sputigena Capno] gi|213954592|gb|EEB65914.1| putative DNA polymerase III subunit delta [Capnocytophaga sputigena Capno] Length = 374 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 39/244 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRM 71 + G++ I+ +L +GR+ HA LF +G G + YA +L NP ++ Sbjct: 4 ILGYDTIKNYLQASVEAGRIPHAQLFVAGEGQGGLPMAIAYATLILSHDNPKAKNQCTQL 63 Query: 72 CNPD----------------PCS--------PFVKQMASHALHDFL-YLSYSLNPKTGKW 106 +PD P S FVK+ +L D+L +L K Sbjct: 64 AHPDLHFAFPTATNDKVKKDPISSLFMDEWRTFVKEQPYGSLFDWLVFLGIE------KK 117 Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + I V+E + I L+L + G +++++I + MN A+N LLK LEEP K +F+L+ Sbjct: 118 QANIGVNEAKEITNKLALKSFEGGYKIMIIWMAEKMNVEASNKLLKLLEEPADKTVFLLV 177 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARA 224 +L TI+SRC ++F LSE KA+++ I ++ + KIA A G+ +A Sbjct: 178 VEDENALLDTIKSRCQILRFPPLSE----KAIKEALITRGLAEAEATKIALRAQGNFNKA 233 Query: 225 IKIL 228 ++++ Sbjct: 234 LQLM 237 >gi|188584657|ref|YP_001916202.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] Length = 589 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Y + L G E + L R+ HA LF G +G GK ++ +A + N D Sbjct: 8 RQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAKAL--NCD 65 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ + +PC + + D L + + N +DEIR IR Sbjct: 66 HSQ------DNEPCGQCSRCIEHDRGTFMDILEIDAASNR---------GIDEIREIRDH 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + + G ++V ++D V + A NALLK+LEEPP V+FIL + + T+ SRC Sbjct: 111 VAYSPSEGNYKVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F LS + + K L+ + Sbjct: 171 QRFDFYRLSTSKIEKQLQNV 190 >gi|160936947|ref|ZP_02084311.1| hypothetical protein CLOBOL_01836 [Clostridium bolteae ATCC BAA-613] gi|158440137|gb|EDP17884.1| hypothetical protein CLOBOL_01836 [Clostridium bolteae ATCC BAA-613] Length = 368 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 16/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I++ +G++ HA + GE G+G+ +L +A +L + P C+ Sbjct: 46 ILGHEQIKEHFRNAVQTGKVSHAYILSGEAGMGRKSLANAFALSLLCEKGMEE-PCMQCH 104 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D +Y+++ P + I VD+IR +I + + + Y++ Sbjct: 105 A------CKQVLSGNHPDLIYVTHE-KPAS------IGVDDIREQINDTIQVRPYSSYYK 151 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + M A NALLK++EEPP + +L++ L TI SRC+ +K L ++ Sbjct: 152 IYIMDEAEKMTVQAQNALLKTIEEPPAYAVILLLTTNQDAFLPTILSRCVQLKLKPLKDS 211 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + L Q + +S+ D A G++ +AI + Sbjct: 212 VVKEYLIQ-SLGENESEADIYAAFARGNLGKAIHL 245 >gi|77747699|ref|NP_779692.2| DNA polymerase III subunit delta' [Xylella fastidiosa Temecula1] Length = 312 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 18/207 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + +A VL ++ + C +Q+ + Sbjct: 22 AGHLGHGLLLCGPEGLGQRAVSLAFADTVL-GKGLTEVARQRC---------RQLITAGT 71 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 72 HPDLHLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 ALLK+LEEP LIS + TIRSRC ++F L++AL L G Sbjct: 132 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFKL---PPLHEALAWLVAQGITE 188 Query: 209 KRDFVKI-AAYGSVARAIKILHYDCDK 234 K + AA G A++ L CD+ Sbjct: 189 KVAVEALDAARGHPGLAMQWL---CDE 212 >gi|134297939|ref|YP_001111435.1| DNA polymerase III subunit delta' [Desulfotomaculum reducens MI-1] gi|134050639|gb|ABO48610.1| DNA polymerase III, delta prime subunit [Desulfotomaculum reducens MI-1] Length = 335 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 17/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ I + L R+ HA LF G GIGK T+ +A +L +AP Sbjct: 7 IIGHQQIIQTLKNAVQKSRVAHAYLFMGPPGIGKQTVARSFAQVLL-----CEAPQ---G 58 Query: 74 PDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + H L+L L P I +++IR ++ + G Sbjct: 59 GDACGNCKSCRQTDGGNHPDLHL---LRPSG----VTIKIEQIRELQRQVQYKPYQGIRH 111 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +++ + M + AAN LK+LEEP +FIL+S +L TI SRC ++F SLS Sbjct: 112 VFILEKSETMTQEAANCFLKTLEEPGSATVFILLSDQPYGLLPTILSRCQQLQFRSLSNQ 171 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + L L + D + +A+ GS+ RAI++ Sbjct: 172 EVSEGLRVLCQVARDRAEELAPLAS-GSIGRAIQL 205 >gi|329767046|ref|ZP_08258574.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] gi|328837771|gb|EGF87396.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] Length = 571 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 34/229 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ HA LF G +G GK ++ +A V +N + Sbjct: 7 RKYRPQTFADIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEVNKNEE 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + K V + D S G VDE+R I+ + Sbjct: 67 YQKENVDIIEIDAAS-----------------------NNG-------VDEVRDIKEAIK 96 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 97 FLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQR 156 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F +LS+ L L E+ ++ D+ + + A G + AI IL Sbjct: 157 FEFKNLSQEQLIDRLKYISEKESLVIEDAAIEKIATLAKGGLRDAISIL 205 >gi|311070666|ref|YP_003975589.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus 1942] gi|310871183|gb|ADP34658.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus 1942] Length = 564 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 153/344 (44%), Gaps = 49/344 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + ++ V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLKKKFSHAYLFSGPRGTGKTSAAKIFSKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVE----EPCNNCAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYD 231 F ++ + + EQLK+ + D + AA G + A+ +L + Sbjct: 171 QRFDFKRITPQAIVGRMKKIVEAEQLKV--EEGALDIIASAADGGMRDALSLLDQAVSFS 228 Query: 232 CDK-------IISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIE--- 276 D+ +I+ + +I + +L + Q + +ELL Q + A LIE Sbjct: 229 GDELTVDDALLITGAVSQHYIGKLAQSLHEKQVSGALETLNELLQQGKDAA--KLIEDMI 286 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 F +++ A L G LE+ ++ + +L +++ A ++Y + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDDTFRALSEQIPAPALYEM 329 >gi|323465897|gb|ADX69584.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 595 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL 221 >gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC 4571] gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC 4571] Length = 595 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL 221 >gi|160872052|ref|ZP_02062184.1| DNA polymerase III subunit tau [Rickettsiella grylli] gi|159120851|gb|EDP46189.1| DNA polymerase III subunit tau [Rickettsiella grylli] Length = 523 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 23/234 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L + R+HHA LF G +G+GK TL R L Sbjct: 5 VLARKYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLA-RLLAKCLN 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P+PC+ + A HA D + + + K V++ R + Sbjct: 64 CQT-------QITPEPCNQCISCQAIHANRFTDLIEVDAASRTK---------VEDTRDL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + T + G +++ +ID V ++ ++ NALLK+LEEPP V+F+L + + + +TI Sbjct: 108 LADVHYTPSQGRYKIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATIL 167 Query: 179 SRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRCL +++ N L L++ KI + AA GS+ A+ +L Sbjct: 168 SRCLQFHLKTITTVQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLL 221 >gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus MTCC 5463] Length = 595 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL 221 >gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9515] gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9515] Length = 595 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P L G E I L Q S ++ A LF G +G GK + +A + N Sbjct: 10 QKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSL--NCL 67 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +PC KQ+A D + + + N TG VD IR I Sbjct: 68 SCEQPT----ANPCGKCELCKQIADGNALDIIEIDAASN--TG-------VDNIREIIDG 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T W+V +ID ++ A+NALLK++EEPP++V+FIL + +++TI+SRC Sbjct: 115 ARFTPTQARWKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRC 174 Query: 182 LSIKFNSLSENNLYKALEQL 201 F +S N ++ L ++ Sbjct: 175 QKFDFKRISSNTIFHNLSEI 194 >gi|315650373|ref|ZP_07903444.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum DSM 3986] gi|315487300|gb|EFU77611.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum DSM 3986] Length = 515 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E I K L +GR+ HA LF G +G GK ++ A + Sbjct: 8 RKFRPSNFDEVVGQEAITKTLKNQLRTGRVSHAYLFCGTRGTGKTSIAKIMARALNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C P K + + + + + + N VD IR I+ + Sbjct: 68 TEAGPCNEC------PTCKSILNETSINVVEIDAASNNG---------VDNIRDIKEQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I T+ SRC Sbjct: 113 YPPTFGRYKVFIIDEVHMLSGGAFNALLKTLEEPPQYVIFILATTEVHKIPVTVLSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKR---DFVKIAAYGSVARAIKIL 228 F + + + + L+ L K G D + D++ AA G++ A+ +L Sbjct: 173 YDFKRIGIDTISQRLKTLCKSEGVDIEDRAVDYIAKAADGAMRDALSLL 221 >gi|228473671|ref|ZP_04058421.1| DNA polymerase III subunit delta' [Capnocytophaga gingivalis ATCC 33624] gi|228274885|gb|EEK13700.1| DNA polymerase III subunit delta' [Capnocytophaga gingivalis ATCC 33624] Length = 390 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 38/277 (13%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR---MCNPD--- 75 K+L + + R+ HA LF GE+G+G + YA +L + ++ + +PD Sbjct: 31 KYLKETIENDRIAHAQLFSGEEGVGTLAMAIAYATELLSKTGDANTKLKCEHLTHPDLHF 90 Query: 76 -------------PCSP--------FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P S FV + +L D+ Y + K GK I VD+ Sbjct: 91 AYPTATTIRVKDHPTSSLFLEEWREFVLRNPYGSLFDW-YQFIGIANKQGK----IGVDD 145 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + I LSL + G ++V++I + MN +N LLK LEEPP + +FIL+ +L Sbjct: 146 AKEITSKLSLKSFEGGYKVMIIWMAELMNTECSNKLLKLLEEPPAQTIFILVVENENLLL 205 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARAIKILHYDCD 233 TI SRC +F L + + AL + G D S+ + I A G+ +A+ L+ + D Sbjct: 206 DTILSRCQITRFTKLGDEVISDALIK---QGIDPSQAQKIAIRAQGNYNKALSFLNQNND 262 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 + + R Y+ + ++ +L+ ++IA Sbjct: 263 NQFEDW--FVRWVRMAYSAKGNTEVLPLILAWSEEIA 297 >gi|71281938|ref|YP_270411.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea 34H] gi|71147678|gb|AAZ28151.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea 34H] Length = 715 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 29/236 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q+L G E + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPC-----SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C D C FV D L + + K VD+ Sbjct: 65 ELGITDKPCGKC--DACIDIDQGRFV---------DLLEIDAASKTK---------VDDT 104 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + Sbjct: 105 REILDNVQYAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPI 164 Query: 176 TIRSRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRCL +L+ E+ L + L ++ + AA GS+ ++ + Sbjct: 165 TVLSRCLQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSL 220 >gi|296332940|ref|ZP_06875398.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672717|ref|YP_003864388.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii str. W23] gi|296149904|gb|EFG90795.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410960|gb|ADM36078.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii str. W23] Length = 563 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 27/248 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + K +E ++ + D + AA G + A+ +L D+ +S Sbjct: 171 QRFDFKRITSQAIVGRMNKIVEAEQLQVEEGSLDIIASAADGGMRDALSLL----DQAVS 226 Query: 238 SYIDLIHI 245 D++ + Sbjct: 227 FSGDVLKV 234 >gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] Length = 595 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL 221 >gi|315037610|ref|YP_004031178.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL 1112] gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL 1112] Length = 602 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 132/290 (45%), Gaps = 41/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQK-MQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I +A +K ++QI +LLS+D A E + K Sbjct: 227 YEKESVNYEDALQITG--FADRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|325288352|ref|YP_004264533.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963753|gb|ADY54532.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM 8271] Length = 531 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q L G E +++ L+ S ++ HA LF G +G GK T A + N Sbjct: 8 REWRPRRFQDLVGQEHVKRILTNALISNKVAHAYLFSGPRGTGKTTAAKILAKAL--NCA 65 Query: 64 FSKA--PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 F + P C D C + A D L + + N +DEIR +R Sbjct: 66 FRRGEEPCNEC--DSCQGIDQGQA----MDVLEIDAASNR---------GIDEIRNLREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L A +G ++V +ID V + A NALLK+LEEPP V+FI+ + + TI SR Sbjct: 111 VKLAATSGEYKVYIIDEVHMLTAEAFNALLKTLEEPPTGVVFIMATTEPHKVPLTILSRV 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 +F+ +S + + L+++ Sbjct: 171 QRFEFHRISPEMIVQRLQEV 190 >gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus GRL 1118] Length = 602 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 132/290 (45%), Gaps = 41/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQK-MQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I +A +K ++QI +LLS+D A E + K Sbjct: 227 YEKESVNYEDALQITG--FADRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|296131618|ref|YP_003638865.1| DNA polymerase III, subunits gamma and tau [Thermincola sp. JR] gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR] Length = 537 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + I + L + R+ HA LF G +G GK T +A + Sbjct: 8 REWRPQIFQDIVGQQHITRTLQNAIKANRIAHAYLFCGPRGTGKTTTAKVFAKALNCKEG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P CN C ++ D L + + N +DEIR +R + Sbjct: 68 PNAEPCNQCNN--CI----RITDGVSMDVLEIDAASNRG---------IDEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +R+ +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 113 FSPTEGRYRIYIIDEVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRCQR 172 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + + L E L++ + + A G + A+ +L Sbjct: 173 FDFRRIGTGEIVDRLRDVCESLQVQTDEETLTLLAKTAEGGLRDALSVL 221 >gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus acidophilus 30SC] gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus acidophilus 30SC] Length = 602 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 132/290 (45%), Gaps = 41/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQK-MQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I +A +K ++QI +LLS+D A E + K Sbjct: 227 YEKESVNYEDALQITG--FADRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|307578372|gb|ADN62341.1| DNA polymerase III subunit delta' [Xylella fastidiosa subsp. fastidiosa GB514] Length = 323 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + +A VL ++ + C +Q+ + Sbjct: 33 AGHLGHGLLLCGPEGLGQRAVSLAFADTVL-GKGLTEVARQRC---------RQLITAGT 82 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 83 HPDLHLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 142 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + TIRSRC ++F Sbjct: 143 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFK 181 >gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] Length = 351 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 124/295 (42%), Gaps = 50/295 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P L G + + L +G++ HA LF G +G GK + A + L Sbjct: 8 RQWRPQDFDSLVGQDHVRTTLKNAIIAGKIAHAYLFAGPRGTGKTSTAKILAKALNCLHG 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P+PC+ P +++ S A D + + N +DEIR +R Sbjct: 68 P----------TPNPCNHCPHCERINSGASMDVFEIDAASNRG---------IDEIRDLR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI S Sbjct: 109 ETVKFAPVDGRYKVYIIDEVHMLTPEAFNALLKTLEEPPAHVVFILATTEPHKIPATIHS 168 Query: 180 RCLSIKFNSL-------------SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 RC F + ++NNL + LK+ + + A G + A+ Sbjct: 169 RCQRYDFRRIGVKEIEGRLAEVAAKNNLNITPDALKL---------IAVHADGGMRDALS 219 Query: 227 ILHYDCDKIISSYIDLIHIPRQEYAL---QKMQQIADELLSQDQKIAFDFLIEFI 278 IL C + + + + H+ RQ L + + +I L ++D L E + Sbjct: 220 ILD-QCTALDDTAVTVTHV-RQLLGLIGHEGIWRITAALANRDSTAVLLALDELV 272 >gi|182682105|ref|YP_001830265.1| DNA polymerase III subunit delta' [Xylella fastidiosa M23] gi|28057484|gb|AAO29341.1| DNA polymerase III delta subunit [Xylella fastidiosa Temecula1] gi|182632215|gb|ACB92991.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] Length = 323 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + +A VL ++ + C +Q+ + Sbjct: 33 AGHLGHGLLLCGPEGLGQRAVSLAFADTVL-GKGLTEVARQRC---------RQLITAGT 82 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L+L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 83 HPDLHLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 142 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + TIRSRC ++F Sbjct: 143 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFK 181 >gi|312864982|ref|ZP_07725210.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei F0415] gi|311099093|gb|EFQ57309.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei F0415] Length = 566 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 23/223 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q L G E + L Q SG++ HA LF G +G GK ++ +A + P+ Sbjct: 15 QELVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------Q 66 Query: 72 CNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 67 VDGEPCNDCDICRDITEGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRA 117 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 Query: 190 SEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++ + L++ I D + + A G + A+ IL Sbjct: 178 KQTAIRQHMAEILDKEGIAYEDQALNLIARQAEGGMRDALSIL 220 >gi|89889745|ref|ZP_01201256.1| DNA polymerase III, delta subunit [Flavobacteria bacterium BBFL7] gi|89518018|gb|EAS20674.1| DNA polymerase III, delta subunit [Flavobacteria bacterium BBFL7] Length = 376 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 32/214 (14%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G E +++ L +GR+ HA L G G G L YA +L + D + +M Sbjct: 4 QDIIGLEHLKRHLQTTVQNGRIAHAQLMVGHTGSGVLPLALAYARSILCSDDKERCNAQM 63 Query: 72 ---CNPD-----PCS-------------------PFVKQMASHALHDFLYLSYSLNPKTG 104 +PD P + F+K +L D+ Y + + K Sbjct: 64 DQIAHPDLHFAYPVANNARIKTKAVSDDFITEWREFLKTQPYGSLADW-YQTIEIEKKQS 122 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 K I VDE +RI LSL + G ++V++I D +N A+N LLK +EEPP K +F+ Sbjct: 123 K----IGVDEAKRIVSKLSLKSYEGGYKVLIIWGADKLNTEASNKLLKLIEEPPAKTVFL 178 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LI+ I++TI+SRC + L+ ++ L Sbjct: 179 LIAEDEDQIINTIKSRCQLLHVPKLNSESIANGL 212 >gi|319901021|ref|YP_004160749.1| DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108] gi|319416052|gb|ADV43163.1| putative DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108] Length = 376 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 35/283 (12%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV------------- 58 + + G E ++ L Q GR+ HA LF G G+GK L YA ++ Sbjct: 5 KNIIGQEAAKQRLIQEVQEGRIPHAQLFCGPTGVGKLPLALAYARYICCPHHTETDACGT 64 Query: 59 ---------LQNPDFSKA-PVRMCNPDP----CSPFVKQMASHAL-HDFLYLSYSLNPKT 103 L +PD P+ P CS F+ Q + + YL++ L Sbjct: 65 CPSCVKWNKLVHPDVHFVFPIVNKAKSPKISVCSDFLPQWRQQLMTSSYFYLNHWLEDMD 124 Query: 104 GKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 + + I E I LSL ++ G ++V ++ + MN+ AN LLK LEEPP+K + Sbjct: 125 AENKQAQIFAQESDEIIRKLSLKSSEGGYKVTIVWQPEKMNQVCANKLLKLLEEPPEKTV 184 Query: 163 FILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSV 221 F+L+S A IL TI SR + E+ + +AL+Q + DSK + A G+ Sbjct: 185 FLLVSEAPEMILPTILSRTQRFNIPKIEESAIAEALQQKFGVQSQDSKS--IAHLANGNF 242 Query: 222 ARAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADEL 262 +A++ +H + + + ++ L+ + Q +++M+Q ++++ Sbjct: 243 IKALETIHLNEENELFFNLFVSLMRLSYQR-KIREMKQWSEQV 284 >gi|294791585|ref|ZP_06756733.1| putative DNA polymerase III, delta' subunit [Veillonella sp. 6_1_27] gi|294456815|gb|EFG25177.1| putative DNA polymerase III, delta' subunit [Veillonella sp. 6_1_27] Length = 346 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 26/271 (9%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + A +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFYGESGLGKLDMAIGLASLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N D K++ + L ++ ++ + P +T + V++ Sbjct: 62 GESYLAEVKEARLANGDT----EKRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N ANA+LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TI SRC+ + FNS+ + + A I G D ++ +A +G+ K+ DC ++ Sbjct: 172 TIISRCMGVGFNSVDVDTIRTAFVARGITG-DIEQAL--LAGHGNPQLVEKLATQDCIEM 228 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQD 266 + + ++ I E M +A E LS++ Sbjct: 229 LELAVKVMDILAFETRWFTMISLACESLSRE 259 >gi|321313687|ref|YP_004205974.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5] gi|320019961|gb|ADV94947.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5] Length = 563 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F ++ + + EQL++ + D + AA G + A+ +L D+ Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQV--EEGSLDIIASAADGGMRDALSLL----DQA 224 Query: 236 ISSYIDLIHI 245 IS D++ + Sbjct: 225 ISFSGDILKV 234 >gi|291482389|dbj|BAI83464.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. natto BEST195] Length = 563 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F ++ + + EQL++ + D + AA G + A+ +L D+ Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQV--EEGSLDIIASAADGGMRDALSLL----DQA 224 Query: 236 ISSYIDLIHI 245 IS D++ + Sbjct: 225 ISFSGDILKV 234 >gi|313902767|ref|ZP_07836164.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter subterraneus DSM 13965] gi|313466887|gb|EFR62404.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter subterraneus DSM 13965] Length = 781 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R++ P + G E + + L+ +GR+ HA LF G +G GK ++ A V Q+P Sbjct: 10 RSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNCQSP 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + P C+ +++ + D L + + N +DEIR +R + Sbjct: 70 EGVE-PCNRCD------LCREINDGSTMDVLEIDAASN---------RGIDEIRELRERV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V + A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 114 RYAPARGRYKVYIIDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAA 217 F+ LS + + LE + MG +++ + +++ A Sbjct: 174 RFDFHRLSPEQIVQRLEAVCTAMGVEAEPEALRLLA 209 >gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii OhILAs] gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii OhILAs] Length = 563 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 36/313 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R F P + + G + + L S + HA LF G +G GK + F A + L Sbjct: 8 RRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNCLSA 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P C + + + + D + + + N VD +R IR Sbjct: 68 EDAN--PCNQCE------VCEGILTENIMDVIEIDAASNN---------GVDNVREIREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +++ +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYPPSKGKYKIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH----YDCD 233 F + N++ K LE + + +G ++ + +++ A G++ A+ IL Y D Sbjct: 171 QRFDFKPVRINDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTED 230 Query: 234 KII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEIC---K 284 + ++ ++++ + E+ + +IA + S + D L+E ++K+I + Sbjct: 231 TLTYTNVVNILGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFR 290 Query: 285 SAKAAALSGQLEE 297 S A ++ QL+E Sbjct: 291 SILLAKMNVQLDE 303 >gi|261252406|ref|ZP_05944979.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP 102891] gi|260935797|gb|EEX91786.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP 102891] Length = 706 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C K++ D L + + K V++ R + + Sbjct: 68 ITANPCGTC--DTC----KEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 +S + +++ L+ + +K + ARA+ ++ + D S D + Sbjct: 173 FHLKPISVDTIHEQLDHI-----------LKEEQVSAEARALGMISHAAD---GSMRDAL 218 Query: 244 HIPRQEYALQKMQQIADEL------LSQDQKIAFDFLIEFILKEICKSAKA--AALSGQL 295 + Q AL Q I D + L DQ + L+E I + ++A +AL+ Sbjct: 219 SLTDQAIALGNGQVITDSVAHMLGTLDTDQAL---HLLEAISSKQAQTAMECISALAQNG 275 Query: 296 EEADQIAQIYFSLVKRVHAFSMY-----NLDRRQM---IFHLLSKARECND--LYFR 342 E D + Q L ++H +MY LD+ Q LLS+A D LY++ Sbjct: 276 VEWDGLLQ---QLSTQLHRLAMYQALPATLDQAQPDAEKIELLSRALSPQDVQLYYQ 329 >gi|320529756|ref|ZP_08030834.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis F0399] gi|320137995|gb|EFW29899.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis F0399] Length = 617 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P L G E I + LS+ SG+ HA LF G +G GK + + + Q Sbjct: 8 RRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNCAQG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + C + +A + D + + N +DEIR +R Sbjct: 68 PTLT--PCGQC--ESC----RAIAEGSSMDVFEIDAASNRG---------IDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V + A NALLK+LEEPP VLFIL + + +TI+SRC Sbjct: 111 VKFAPTEGRCKIYIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ ++ + + L + I D + A G + A+ IL Sbjct: 171 QRYDFHRITVAEIRERLSYVCRESGIAANDDALAIIAAQADGGMRDALSIL 221 >gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] Length = 567 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 40/248 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT------LGFRYAGH 57 R + P + G E + + L + +GR+ HA LF G +G GK + +G A Sbjct: 8 RRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMGLNCA-- 65 Query: 58 VLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q P P+PC + + + + D + + + N +DEI Sbjct: 66 --QGP----------TPEPCGRCESCRSIVAGSSMDVIEMDAASN---------RGIDEI 104 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R ++L G +V +ID V + A NALLK LEEPP+ V+F+L + +L Sbjct: 105 RELRDRVNLAPAAGRAKVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLP 164 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TI SRC S F L + L ++ + G +++R+ A ++ARA D + Sbjct: 165 TIISRCQSFDFRRPGVGTLVEKLSEIARAEGIEAERE-----ALTAIARASGGSFRDAEG 219 Query: 235 I---ISSY 239 + ISS+ Sbjct: 220 MLDQISSF 227 >gi|257091956|ref|YP_003165597.1| DNA polymerase III subunits gamma and tau [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044480|gb|ACV33668.1| DNA polymerase III, subunits gamma and tau [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 553 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFANLVGQEHVVRALTHALTEQRLHHAYLFTGTRGVGKTTLARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ ++ S D L + + N + VDE+R++ Sbjct: 65 ETGVSATPCGTCS------ACLEIDSGRFVDLLEVDAATNTR---------VDEMRQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++ +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 NAVYAPTRGRFKVYVIDEVHMLSTSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +++ ++L LE I + +A GS+ A+ +L Sbjct: 170 CLQFNLKQMTQPLIASHLKHILEVEAISADTGALHLLARSAAGSMRDALSLL 221 >gi|153854738|ref|ZP_01995972.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814] gi|149752645|gb|EDM62576.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814] Length = 523 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I + L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPDEFEDVKGQDAIVRTLKNQINADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + N VD IR IR ++ Sbjct: 68 VDGSPCGEC------AMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREEVT 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVK-IA--AYGSVARAIKIL 228 F +S + L +L GWD + V+ IA A GS+ ++ +L Sbjct: 173 YDFKRISIETIAARLRELIDKEGWDVEDKAVRYIAKMADGSMRDSLSLL 221 >gi|119478163|ref|ZP_01618219.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] gi|119448672|gb|EAW29916.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] Length = 334 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA L G G GK +++ + A C +Q A D Sbjct: 30 RLPHAFLLAGSPGTGKHRFLLSLCHYLMCQAPLAGAACGKC---------RQCQLLATGD 80 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L + L P+ + I VD++R + FLS T+ G +++ +I P + MN NAANALL Sbjct: 81 HPDLKW-LAPEEKSRQ--IKVDQVRAVVEFLSHTSQQGGYKIGVITPAEAMNINAANALL 137 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 KSLEEP K L L+S + +L TIRSRC + F Sbjct: 138 KSLEEPSDKTLLFLVSDSPGQLLPTIRSRCQQVSF 172 >gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] Length = 477 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 20/218 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + L SGR+ HA LF G +G GK ++ F A + N Sbjct: 8 RRYRPQDFDSVVGQEYVTRILKNQILSGRVGHAYLFSGIRGTGKTSIAKIFARAINCEHN 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P C D C K + D + + + N VDEIR IR Sbjct: 68 EDGN--PCNAC--DTCLNIEK----PGVMDIIEIDGASNR---------GVDEIREIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + + A NALLK+LEEPP+ ++FIL + + TI SRC Sbjct: 111 VKYPPTMGKYKVYIIDEVHMLTKEAFNALLKTLEEPPEHIVFILATTEPNKLPMTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAY 218 +S+ + + L+ +G R+ + AY Sbjct: 171 QRFDIKPISQERIAGQIAHILEDIGVSMDREAIDFIAY 208 >gi|71274499|ref|ZP_00650787.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900328|ref|ZP_00682463.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|170730746|ref|YP_001776179.1| DNA polymerase III subunit delta' [Xylella fastidiosa M12] gi|71164231|gb|EAO13945.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729903|gb|EAO31999.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|167965539|gb|ACA12549.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 330 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 11/159 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + +A VL ++ + C +Q+ + Sbjct: 33 AGHLGHGLLLCGPEGLGQRAVALAFADAVL-GKGLTEVARQRC---------RQLITAGT 82 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 83 HPDLQLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 142 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + TIRSRC ++F Sbjct: 143 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFK 181 >gi|15807400|ref|NP_296131.1| DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1] gi|6460225|gb|AAF11953.1|AE002071_7 DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1] Length = 615 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 24/198 (12%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ + + G E ++ L GR+ HA LF G +G+GK T ++ Sbjct: 10 PIRWEDVVGQEHVKDVLRTALEQGRIGHAYLFSGPRGVGKTT-----TARLIAMTANCTG 64 Query: 68 PVRMCNPDPC----SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P P PC S + SH D + + + N +VD++R +R + Sbjct: 65 PA----PKPCGECESCLAVRAGSHP--DVMEIDAASN---------NSVDDVRDLREKVG 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L A G ++ ++D M+R A NALLK+LEEPP+ V+FIL + I+ TI SRC Sbjct: 110 LAAMRGGKKIYILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQH 169 Query: 184 IKFNSLSENNLYKALEQL 201 +F L+ + L L Sbjct: 170 YRFRRLTSEEIAGKLAGL 187 >gi|56418552|ref|YP_145870.1| DNA polymerase III subunits gamma and tau [Geobacillus kaustophilus HTA426] gi|56378394|dbj|BAD74302.1| DNA-directed DNA polymerase III gamma and tau subunits [Geobacillus kaustophilus HTA426] Length = 559 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP +PC+ P + + + D L + + N + VDEIR IR Sbjct: 64 CEQAPA----AEPCNECPACLGITNGTVPDVLEIDAASNNR---------VDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRC 170 Query: 182 LSIKFNSL 189 F + Sbjct: 171 QRFDFRRI 178 >gi|149927016|ref|ZP_01915274.1| AAA ATPase, central region [Limnobacter sp. MED105] gi|149824237|gb|EDM83457.1| AAA ATPase, central region [Limnobacter sp. MED105] Length = 586 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 15/181 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + K LS + R+HHA LF G +G+GK T+ A V S+ P C Sbjct: 21 LVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARAVNCEQGISRTPCGKCQ 80 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C +++ D L + + N + VDE+R + G ++V Sbjct: 81 A--CV----EISQGRFVDLLEVDAATNTR---------VDEMRALLENAMYAPTAGRYKV 125 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ +A NA+LK+LEEPP VLFIL + I +T+ SRCL L + Sbjct: 126 YVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPPDQ 185 Query: 194 L 194 L Sbjct: 186 L 186 >gi|239825603|ref|YP_002948227.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. WCH70] gi|239805896|gb|ACS22961.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. WCH70] Length = 561 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + A V + Sbjct: 8 RVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKILAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ P + + A+ D L + + N + VDEIR IR Sbjct: 64 CEHAP----TAEPCNECPACIGITNGAIPDVLEIDAASNNR---------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + ++ L + +EQ I D + AA G + A+ +L Sbjct: 171 QRFDFRRIPLHSIVARLRQVIEQQGIKASDEALFAIARAADGGMRDALSLL 221 >gi|291537700|emb|CBL10812.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis M50/1] Length = 425 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P K +A+ + + + + N VD IR+IR + Sbjct: 68 VDGSPCGEC------PACKAIAAGNSMNVIEIDAASNNG---------VDNIRQIREEVE 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S L + +E+ ++ + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes L99] Length = 580 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|145588885|ref|YP_001155482.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047291|gb|ABP33918.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 553 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P L G + + K L+ GR+HHA LF G +G+GK T+ R L N Sbjct: 8 RSWRPKTFSELVGQDHVVKALTHALDQGRLHHAWLFTGTRGVGKTTIA-RIMAKAL-NCT 65 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +M + +PC P ++ + D++ + + N VD+I + Sbjct: 66 GADGSGKMTS-EPCGKCPACMEIDAGRFVDYIEMDAASNRG---------VDDIAALLEK 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V MID V + +A NA+LK+LEEPP+ V FIL + I TI SRC Sbjct: 116 AAYAPSNGRYKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTILSRC 175 Query: 182 LSIKFNSLSENNLYKALEQL 201 L + + + LE++ Sbjct: 176 LQFNLKQMPVPLIVEHLEKV 195 >gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC 6026] Length = 602 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L+Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ LL+ + A + + Sbjct: 231 KV--KYEDALRITG--YAAQEKIEQVLLNLLNGETSAALEIV 268 >gi|323342245|ref|ZP_08082477.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463357|gb|EFY08551.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix rhusiopathiae ATCC 19414] Length = 600 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 18/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G E + L ++ HA LF G +G GK ++ +A V +NP Sbjct: 8 RKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAVNCENP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + C D C +A D + + + N VDEIR + + Sbjct: 68 D--QVICGTC--DNCLA----VADGTHPDLIEIDAASNNG---------VDEIRGLIEKV 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T G ++V +ID V +++ A NALLK+LEEPP V+FIL + +L TI SRC Sbjct: 111 KYTPILGKYKVYIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQ 170 Query: 183 SIKFNSLSENNLYKALE 199 FN + E ++ K L+ Sbjct: 171 RYDFNRIGEVDIAKRLD 187 >gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071] gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071] Length = 580 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|33862214|ref|NP_893775.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634432|emb|CAE20117.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 579 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P+ L G E I L Q S ++ A LF G +G GK + +A + N Sbjct: 10 QKYRPLNLDELVGQEFISITLKQALISQKIAPAYLFNGPRGTGKTSSARIFAKSL--NCL 67 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK P P+PC Q+A D + + + N TG V+ IR I Sbjct: 68 SSKQPT----PNPCEKCELCIQIAEGNALDIIEIDAASN--TG-------VENIREIIDR 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 W+V +ID ++ A+NALLK++EEPP++V+FIL + +++TI+SRC Sbjct: 115 ARFAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRC 174 Query: 182 LSIKFNSLSENNLYKAL 198 F +S N ++ L Sbjct: 175 QKFDFKRISANTIFNNL 191 >gi|325982256|ref|YP_004294658.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212] gi|325531775|gb|ADZ26496.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212] Length = 537 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPRNFTELTGQEHVVRALTNALEQNRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C Q+ S + D + L + N + VD +R + Sbjct: 66 ETGITATPCGTCT------TCVQIDSGSFIDLVELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 NALYAPTCGRYKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSR 170 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL + + ++L K L Q KI V AA GS+ A+ +L Sbjct: 171 CLQFNLKQIPQPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLL 222 >gi|291537839|emb|CBL10950.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis XB6B4] Length = 526 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P K +A+ + + + + N VD IR+IR + Sbjct: 68 VDGSPCGEC------PACKAIAAGNSMNVIEIDAASNNG---------VDNIRQIREEVE 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S L + +E+ ++ + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|315126896|ref|YP_004068899.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas sp. SM9913] gi|315015410|gb|ADT68748.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas sp. SM9913] Length = 777 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALNQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C S V A + D L + + K V++ R I Sbjct: 65 DEGISATPCGQC-----SSCVDIEAGRYI-DLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 CL N+LS+ + + LE + + + +D+ + AA GS+ A+ + Sbjct: 170 CLQFNLNALSQAEIKQQLEHVLTQEQLNFDNDALSIIAKAADGSMRDALSL 220 >gi|261417516|ref|YP_003251198.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y412MC61] gi|297528392|ref|YP_003669667.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. C56-T3] gi|319765174|ref|YP_004130675.1| DNA polymerase III subunits gamma and tau [Geobacillus sp. Y412MC52] gi|261373973|gb|ACX76716.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y412MC61] gi|297251644|gb|ADI25090.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. C56-T3] gi|317110040|gb|ADU92532.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y412MC52] Length = 559 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP +PC+ P + + + D L + + N + VDEIR IR Sbjct: 64 CEQAPA----AEPCNECPACLGITNGTVPDVLEIDAASNNR---------VDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSL 189 F + Sbjct: 171 QRFDFRRI 178 >gi|332109983|gb|EGJ10611.1| DNA polymerase III subunits gamma and tau [Rubrivivax benzoatilyticus JA2] Length = 378 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P ++ G E + + LS R+HHA LF G +GIGK T+ A + Sbjct: 5 VLARKYRPRSFDQMVGQEHVVRALSNALEQQRLHHAYLFTGTRGIGKTTVSRILAKSLNC 64 Query: 60 QNPDFSKA----PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + P +C+ C+ ++ + D++ L + N ++DEI Sbjct: 65 TGPDGTGGITAHPCGVCSA--CT----EIDADRYIDYIELDAASNR---------SIDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + + G ++V MID + ++A NALLK+LEEPP+ + F+L + +L Sbjct: 110 RDLIERAAYKPGIGRFKVFMIDEAHQLTKDAFNALLKTLEEPPEYLKFVLATTDPEKMLP 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ +++ L+++ Sbjct: 170 TVLSRCLQFNLRPMAPQTVHEHLQKV 195 >gi|74316533|ref|YP_314273.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] gi|74056028|gb|AAZ96468.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 33/291 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + LS GR+HHA L G +G+GK TL A + Sbjct: 17 RKWRPRAFADLRGQEHVVQALSNALTQGRLHHAYLLTGTRGVGKTTLARILAKCLNCESG 76 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P C+ C+ Q+ + D L L + N TG VD +R + Sbjct: 77 VSATPCGTCSA--CT----QIDAGRFVDLLELDAASN--TG-------VDNMREVLDNAQ 121 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V +++ A N++LK+LEEPP V FIL + I T+ SRCL Sbjct: 122 YAPTVGRYKVYIIDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQ 181 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKI 235 ++ +L L Q ++ + + + AA GS+ A+ + + Y +I Sbjct: 182 FNLKPMTPALVAGHLGDVLAQERVDAEPAALNLLARAAAGSMRDALSLTDQAIAYGGGRI 241 Query: 236 ISSYID-LIHIPRQEYALQKMQQIA----DELLSQ-----DQKIAFDFLIE 276 ++ ++ ++ R++Y + +A D L++Q ++ IAFD ++ Sbjct: 242 EAAAVEAMLGTVRRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQ 292 >gi|238855363|ref|ZP_04645675.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3] gi|260664921|ref|ZP_05865772.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US] gi|282934593|ref|ZP_06339840.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] gi|238832024|gb|EEQ24349.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3] gi|260561404|gb|EEX27377.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US] gi|281301345|gb|EFA93642.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] Length = 593 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L ++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----VGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ K S A+ D + + + N VDEIR IR Sbjct: 63 ---NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+ NL LEQ I DS + A G + ++ IL Sbjct: 171 QRYNFKRISKQNLVDRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSIL 221 >gi|94986234|ref|YP_605598.1| DNA polymerase III, subunits gamma and tau [Deinococcus geothermalis DSM 11300] gi|94556515|gb|ABF46429.1| DNA polymerase III, subunits gamma and tau [Deinococcus geothermalis DSM 11300] Length = 737 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 16/194 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ ++ G E ++ L GR+ HA LF G +G+GK T R S Sbjct: 10 PINWDQVVGQEHVKDVLKAALEQGRVGHAYLFSGPRGVGKTTTA-RLIAMTANCTGPSPK 68 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C S + SH D L + + N +VD++R +R + L A Sbjct: 69 PCGECE----SCLAVRNGSHP--DVLEIDAASN---------NSVDDVRDLREKVGLAAM 113 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++ ++D M+R A NALLK+LEEPP V+FIL + I+ TI SRC +F Sbjct: 114 RGGKKIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRCQHYRFR 173 Query: 188 SLSENNLYKALEQL 201 L+ + L L Sbjct: 174 RLTPEEIAGKLADL 187 >gi|282856831|ref|ZP_06266090.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455] gi|282585341|gb|EFB90650.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455] Length = 640 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +++ SG + HA LF G +G GK T+ +A V Sbjct: 7 RRYRPQKFSDVVGQSAAIGVITRAIESGAIGHAYLFSGPRGCGKTTVARLFAKAVNCPSK 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + D + + + N +VDEIR ++ ++ Sbjct: 67 TGAEPCNECE------TCRAIREGSCLDVIEIDGASN---------NSVDEIRNLKEHVA 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L + T ++V +ID V ++ +A NALLK+LEEPP++V+F+L + A + TIRSRC Sbjct: 112 LASFTCPYKVYIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQH 171 Query: 184 IKFNSLSENNLYKALEQL 201 I F+ ++ + L+Q+ Sbjct: 172 IPFHGMTLEQIVNRLKQV 189 >gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus ultunensis DSM 16047] gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus ultunensis DSM 16047] Length = 601 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 39/280 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNKCTNCIAADHGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+++L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF 271 +Y D + I A + ++ I LL+QD A Sbjct: 227 YEKESVNYKDALQI-TGFAARENIEHILLSLLNQDAGTAL 265 >gi|218777884|ref|YP_002429202.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01] gi|218759268|gb|ACL01734.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01] Length = 330 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 17/198 (8%) Query: 6 FDPVYNQ-RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNP 62 DPV +Q R G FLS + HAL+F G+ G+GK A + F A + P Sbjct: 1 MDPVRHQKRALG------FLSGILAKNNVAHALVFTGDAGLGKRQAAVHFAMARNCEGTP 54 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D A P +++ S D L++ K I +++IR + L Sbjct: 55 DPESAMFGSQGPCGVCGSCRKILSGNHPDVLFVE--------KRGASIKIEQIRDLLSVL 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++ + G RV++I M +++NALLK+LEEP F+L++ +L T+ SRC Sbjct: 107 AMRPSEGKTRVVLISGAGDMTASSSNALLKALEEPSDTTCFVLLAGQKSELLPTVVSRCQ 166 Query: 183 SIKFNSLSENNLYKALEQ 200 I+F+ L + L ++LE Sbjct: 167 EIRFSPLPVSFLIESLEN 184 >gi|317495187|ref|ZP_07953557.1| DNA polymerase III [Gemella moribillum M424] gi|316914609|gb|EFV36085.1| DNA polymerase III [Gemella moribillum M424] Length = 569 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 40/232 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK ++ +A V N Sbjct: 7 RKYRPQTFKDIVGQNHIVSVLKNAMDKNQISHAYLFYGPRGTGKTSIAKIFANEVNNNEV 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + K V + D S G VDE+R I+ + Sbjct: 67 YQKENVDIIEIDAAS-----------------------NNG-------VDEVRDIKEAIK 96 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V + A NALLK+LEEPP V+FIL + I STI SRC Sbjct: 97 FLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPSTILSRCQR 156 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRD-----FVKIA--AYGSVARAIKIL 228 +F +LS+ L +E+LK + D KIA A G + AI IL Sbjct: 157 FEFKNLSQQQL---VERLKYISKTENIDIEAKAIEKIATLAKGGLRDAISIL 205 >gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 220] Length = 579 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J1-175] gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] Length = 579 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|153835689|ref|ZP_01988356.1| DNA polymerase III subunit delta [Vibrio harveyi HY01] gi|148867681|gb|EDL66955.1| DNA polymerase III subunit delta [Vibrio harveyi HY01] Length = 320 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 22/190 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + QG+ L ++ H L +++ C+ S + Q SH Sbjct: 21 SERVPGALLLQSAQGLAVEKLVELFS-HSLLCKNYTSEACGFCH----SCQLTQSNSHP- 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD+IR ++ +RV +I+P D MN +A+NA Sbjct: 75 -DLHWIKPE---KEGK---SITVDQIRACNRLAHESSQLNGYRVFIIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK+LEEP QK LF+L++H +L TI+SRC S + M W S+ Sbjct: 128 LLKTLEEPGQKCLFLLVTHNQERLLPTIQSRCQQWVVTPPSTE---------QAMSWMSE 178 Query: 210 RDFVKIAAYG 219 + +K+ AY Sbjct: 179 QGSLKVPAYA 188 >gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262] gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262] Length = 579 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNNG---------VEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|295107929|emb|CBL21882.1| DNA polymerase III, subunits gamma and tau [Ruminococcus obeum A2-162] Length = 529 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L+ + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDNFADVKGQDHIVTTLTNQINANRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P+ N PC+ A A + G VD IR IR ++ Sbjct: 63 NCEHPI---NGSPCNECEMCKAIQAGTSMNVIEIDAASNNG-------VDNIREIREEVT 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKAL-EQLKIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ +S + + L E LK+ G +++ +V A GS+ A+ +L D+ I+ Y Sbjct: 173 YDFHRISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|114563577|ref|YP_751090.1| DNA polymerase III, subunits gamma and tau [Shewanella frigidimarina NCIMB 400] gi|114334870|gb|ABI72252.1| DNA polymerase III, subunits gamma and tau [Shewanella frigidimarina NCIMB 400] Length = 939 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 8 RKWRPAKFEQMVGQSHVLMALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ C ++A D + + + K VD+ R + + Sbjct: 68 VTATPCGECSS--C----IEIAQGRFVDLIEVDAASRTK---------VDDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SRCL Sbjct: 113 YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPHKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 SLS++ + K LE Q K+ + AA GS+ A+ + Sbjct: 173 FNLKSLSQDEISKQLEYVITQEKLPFESQALSLLAKAANGSMRDALSL 220 >gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4] gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4] Length = 602 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ +LL AF+ + Sbjct: 231 KV--KYEDALKITG--YAAQEKIEQVLLDLLKGQTSEAFEIV 268 >gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC 33323] gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC 33323] Length = 602 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ +LL AF+ + Sbjct: 231 KV--KYDDALKITG--YAAQEKIEQVLLDLLKGQTSEAFEIV 268 >gi|91793733|ref|YP_563384.1| DNA polymerase III, subunits gamma and tau [Shewanella denitrificans OS217] gi|91715735|gb|ABE55661.1| DNA polymerase III, subunits gamma and tau [Shewanella denitrificans OS217] Length = 921 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPAKFEQMVGQSHVLLALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ C ++A D + + + K VD+ R + Sbjct: 65 ETGVTASPCGTCSS--CV----EIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL SLS++ + + LE Sbjct: 170 CLQFNLKSLSQDEISQQLE 188 >gi|254830860|ref|ZP_05235515.1| hypothetical protein Lmon1_05849 [Listeria monocytogenes 10403S] Length = 579 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] Length = 579 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|28198956|ref|NP_779270.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa Temecula1] gi|182681665|ref|YP_001829825.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M23] gi|28057054|gb|AAO28919.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa Temecula1] gi|182631775|gb|ACB92551.1| DNA polymerase III, subunits gamma and tau [Xylella fastidiosa M23] gi|307580101|gb|ADN64070.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa subsp. fastidiosa GB514] Length = 543 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + + + DPC + L TG VD++R + Sbjct: 63 NCE------QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTG-------VDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L E + + + ++ +I D+ + AA GS+ + +L Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDTAIIELSKAADGSLRDGLSLL 221 >gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] Length = 562 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L ++ HA +F G +G GK T+ +A + + Sbjct: 8 RTWRPQKFGDVVGQKHVTKTLQNALLQEKVSHAYVFSGPRGTGKTTIAKVFAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ P + ++ D L + + N VDEIR IR Sbjct: 64 CEHAPV----AEPCNECPSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVKYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F +S N++ + L Sbjct: 171 QRFEFRKISVNDIVERL 187 >gi|226325842|ref|ZP_03801360.1| hypothetical protein COPCOM_03655 [Coprococcus comes ATCC 27758] gi|225205966|gb|EEG88320.1| hypothetical protein COPCOM_03655 [Coprococcus comes ATCC 27758] Length = 329 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 18/213 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH +I +++ ++ HA + GE+G GK L +A LQ P C+ Sbjct: 7 VVGHSEIIQYIQNAVTEDKVSHAYILNGEKGSGKKMLAGLFA-QTLQCEKGGAEPCYECH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ S D +++++ P + I+VD+IR +I + + G ++ Sbjct: 66 S------CKQAVSGNHPDIIWVTHE-KPNS------ISVDDIRVQINGDIQVKPYNGKYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++ D M A NALLK++EEPP + +L++ + ++L TI SRC+ +K ++ + Sbjct: 113 IYIVPDADMMTVQAQNALLKTIEEPPAYAVILLLTENANSLLPTICSRCVMLKLRNIKDQ 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARA 224 + + L EQL++ D K D A G++ +A Sbjct: 173 LVKRYLMEQLQVP--DYKADVCTAFAQGNIGKA 203 >gi|226354984|ref|YP_002784724.1| DNA polymerase III subunits gamma and tau [Deinococcus deserti VCD115] gi|226316974|gb|ACO44970.1| putative DNA polymerase III, subunits gamma and tau [Deinococcus deserti VCD115] Length = 762 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 30/201 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ + G E ++ L GR+ HA LF G +G+GK T A + N Sbjct: 10 PIRWDEVVGQEHVKDVLRAALEQGRVGHAYLFSGPRGVGKTTTARLIA--MTAN------ 61 Query: 68 PVRMCN---PDPC----SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 C+ P PC S + SH D L + + N +VD++R +R Sbjct: 62 ----CSGPLPKPCGECESCLSVRAGSHP--DVLEIDAASN---------NSVDDVRDLRE 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +SL A G ++ ++D M+R A NALLK+LEEPP V+FIL + I+ TI SR Sbjct: 107 KVSLAAMRGGKKIYILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSR 166 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C +F L+ + L L Sbjct: 167 CQHYRFRRLTAEEIAGKLSGL 187 >gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e] gi|224499379|ref|ZP_03667728.1| hypothetical protein LmonF1_06652 [Listeria monocytogenes Finland 1988] gi|224502886|ref|ZP_03671193.1| hypothetical protein LmonFR_10254 [Listeria monocytogenes FSL R2-561] gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165] gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28] gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e] gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165] gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] Length = 579 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|323493358|ref|ZP_08098481.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG 20546] gi|323312444|gb|EGA65585.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG 20546] Length = 714 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 29/259 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGVC--DTC----KEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 +S +N+++ L+ + ++ + ARA+ ++ + D S D + Sbjct: 173 FHLKPISVDNIHQQLDHI-----------LQHENVAAEARALGMISHAAD---GSMRDAL 218 Query: 244 HIPRQEYALQKMQQIADEL 262 + Q AL Q + D + Sbjct: 219 SLTDQAIALGNGQVLTDSV 237 >gi|291550590|emb|CBL26852.1| hypothetical protein RTO_23610 [Ruminococcus torques L2-14] Length = 331 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 22/217 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + GH++I K++S + + HA + GE+G GK L +A + QN R Sbjct: 7 VVGHKNIIKYISSAVQADAVSHAYILNGERGSGKRLLANLFAMSLQCQN--------RAE 58 Query: 73 NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTG 129 + + C KQ+ S D + +++ P T I+VD+IR ++ + + + Sbjct: 59 DGEACGKCQSCKQVQSGNQPDIIKVTHE-KPNT------ISVDDIRTQVNNDIVIKPYSS 111 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++ +I D M+ A NALLK++EEPP+ + +L++ + +L TIRSRC+ +K ++ Sbjct: 112 KYKIYIIPEADLMSAQAQNALLKTIEEPPEYAVIMLLTENAEALLPTIRSRCVMMKLRNI 171 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + K L EQ++I D K D A G++ +AI Sbjct: 172 KDQLVKKYLMEQMEI--PDYKADVCVAFAQGNMGKAI 206 >gi|116874071|ref|YP_850852.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] Length = 579 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|254899839|ref|ZP_05259763.1| hypothetical protein LmonJ_08496 [Listeria monocytogenes J0161] gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900] gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900] gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 579 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|95928309|ref|ZP_01311057.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas acetoxidans DSM 684] gi|95135580|gb|EAT17231.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas acetoxidans DSM 684] Length = 597 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK + A + Sbjct: 5 VMARKWRPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++++S D + + N TG VD++R +R Sbjct: 65 ENGPSAEPCNQCQ------HCEEISSGHSVDVFEIDGASN--TG-------VDDVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L + +++ +ID V ++ NA NALLK+LEEPP+ V FI + I TI SR Sbjct: 110 TLRYMPSQCRYKIFIIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + L ++ Sbjct: 170 CQRFDFRKIPAPKVVAQLRRI 190 >gi|225575493|ref|ZP_03784103.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM 10507] gi|225037290|gb|EEG47536.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM 10507] Length = 534 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 107/241 (44%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E I L+ + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDNFSDVKGQEHIVTTLTNQIKADRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV + PC+ A A + G VD IR IR ++ Sbjct: 63 NCEHPV---DGSPCNECETCRAIQAGTSMNVIEIDAASNNG-------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTQGRYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S + K L+ L +I + +V AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRISIETISKRLQDLMDKEQIQVQEKAIRYVAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|253580411|ref|ZP_04857676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848141|gb|EES76106.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 539 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L+ R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDNFADVKGQDHIVTTLTNQIKHNRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV N PC+ A A + G VD IR IR +S Sbjct: 63 NCEHPV---NGSPCNECAMCKAIQAGTAMNVIEIDAASNNG-------VDNIREIREEVS 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQ-LKIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ ++ + + L++ LK+ G +++ +V A GS+ A+ +L D+ I+ Y Sbjct: 173 YDFHRITIDTIAARLDELLKVEGVEAEEKAVRYVAKAGDGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|332035238|gb|EGI71745.1| DNA polymerase III subunits gamma and tau [Pseudoalteromonas haloplanktis ANT/505] Length = 841 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD------- 113 + S P C S L+ + G++ ++ +D Sbjct: 65 DEGISANPCGQC-----------------------SSCLDIEAGRYIDLLEIDAASRTKV 101 Query: 114 -EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + R I + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTREILDNVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 + TI SRCL N+LS++ + LE + + + +D+ + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFNLNALSQSEIKTQLEHVLTREQLSFDTDALSIISKAADGSMRDALSL 220 >gi|304321769|ref|YP_003855412.1| DNA polymerase III subunit delta' [Parvularcula bermudensis HTCC2503] gi|303300671|gb|ADM10270.1| DNA polymerase III, delta prime subunit [Parvularcula bermudensis HTCC2503] Length = 331 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 DP V Q+A A D+ ++ + KTGK I V++IR + T+ +G RV+ Sbjct: 62 DPA--IVGQIAEEAHPDYFLVTRRPDEKTGKLPRTILVNDIREMIARFYQTSVSGR-RVV 118 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID D MN +AANALLKSLEEPPQ +L++ A +L TIRSRC + + Sbjct: 119 VIDAADEMNASAANALLKSLEEPPQGATLLLLASAPGRLLPTIRSRCRRLDLGPSPLGEI 178 Query: 195 YKALE 199 + LE Sbjct: 179 AQWLE 183 >gi|160914821|ref|ZP_02077035.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991] gi|158433361|gb|EDP11650.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991] Length = 593 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 22/258 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I K L ++ HA LF G +G GK ++ +A V+ Sbjct: 14 RTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFA-KVINCES 72 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C Q SH D + + + N + R +I +++Y Sbjct: 73 KEHKPCLQC--DNC--LAVQNGSHP--DIIEIDAASNNGVEEVRNLI-----EKVKY--- 118 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 119 -APLKGKYKVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQR 177 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F + +N ++ LE+ I D + + A G + A+ IL C +++ Sbjct: 178 FDFTKVPKNEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILD-QCIAYATNH 236 Query: 240 IDLIHIPRQEYALQKMQQ 257 I+L HI + Y + +Q+ Sbjct: 237 IELQHI-NEIYGITTVQE 253 >gi|119469545|ref|ZP_01612449.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Alteromonadales bacterium TW-7] gi|119447080|gb|EAW28350.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Alteromonadales bacterium TW-7] Length = 831 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S +P C+ C+ + + D L + + K V++ R I Sbjct: 65 DEGISASPCGQCSS--CT----DIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL N+LS++ + L+ + Sbjct: 170 CLQFNLNALSQSEIKTQLQHV 190 >gi|91215353|ref|ZP_01252324.1| putative DNA polymerase III delta prime subunit [Psychroflexus torquis ATCC 700755] gi|91186305|gb|EAS72677.1| putative DNA polymerase III delta prime subunit [Psychroflexus torquis ATCC 700755] Length = 379 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 43/256 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV------------- 58 + + G + ++ L + R+ HA LF G G G + +A + Sbjct: 4 EDILGLQHLKNHLVSSVQNNRVAHAQLFTGSIGSGTLPMAIAFARTLMIQYSSPSKGDRI 63 Query: 59 ------LQNPDFSKA-PVRMCNPDPCSP-----------FVKQMASHALHDFLYLSYSLN 100 L +PD P+ + P FV Q +L+D+ Y + Sbjct: 64 SRSFDQLTHPDLHFVYPINTTSSSSKKPNSLDFIYEWRSFVSQNPYQSLYDW-YQKVGIE 122 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 K G I VDE I LSL + G +V++I D MN A+N LLK +EEPP Sbjct: 123 KKQGN----INVDEAAHIVKLLSLKSFEGGPKVMIIWCADKMNSAASNKLLKLIEEPPNN 178 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD-SKRDFVKIA--A 217 FILI+ + IL TIRSRC + F + E ++ K L + +D ++ + +KIA A Sbjct: 179 TYFILITDSPEDILQTIRSRCQRLDFPPIGEADIIKGL----VSKFDITESEALKIAYQA 234 Query: 218 YGSVARAIKILHYDCD 233 GS ++A+ ++ ++ D Sbjct: 235 DGSFSKALHLVEHNSD 250 >gi|291562841|emb|CBL41657.1| DNA polymerase III, delta' subunit [butyrate-producing bacterium SS3/4] Length = 335 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 18/222 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G+E ++ + + ++ HA + GE G+G+ ++ +A +L S+ P M Sbjct: 10 EEILGNEMVKDHFKKAIQNHKISHAYILTGEAGMGRKSIANAFAMTLLCEKGGSE-PCMM 68 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 C+ KQ+ S D +Y+++ K G I VD++R +I + + + Y Sbjct: 69 CHS------CKQVMSGNHPDLIYVTHE---KPGS----IGVDDVREQINDTIMIRPYSSY 115 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ ++D + M A NALLK++EEPP + ILI+ L TI SRC+ +K L Sbjct: 116 YKIYIVDEAEKMTVQAQNALLKTIEEPPSYAVIILITTNQEAFLPTILSRCVQMKLKPLK 175 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + + L Q L I D+ D A G++ +AI + D Sbjct: 176 DFTIKSYLTQNLHIAEKDA--DICAAFARGNLGKAIHLASSD 215 >gi|256844521|ref|ZP_05550007.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] gi|256613599|gb|EEU18802.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] Length = 601 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 129/303 (42%), Gaps = 46/303 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADQGSMSDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL--------- 228 F +S+ +L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 229 --HYDCDKIISSYIDLIHIPR------QEYALQKMQQIADELL-SQDQKIAFDFLIEFIL 279 +YD I+ + D +I + + A Q +Q DEL K D +I+ Sbjct: 231 SVNYDDALQITGFADRENIEKILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTT 290 Query: 280 KEI 282 K + Sbjct: 291 KSL 293 >gi|225387325|ref|ZP_03757089.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme DSM 15981] gi|225046574|gb|EEG56820.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme DSM 15981] Length = 566 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + I + L SGR+ HA LF G +G GK ++ +A V +NP Sbjct: 8 RKWRPASFEDVKGQDPIVQTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNCENP 67 Query: 63 DFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N PC+ P + + S + + + + + N V+ IR IR Sbjct: 68 ---------VNGSPCNECPACRAIISGSSMNVVEIDAASNNG---------VENIRDIRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 110 QVQYPPTDGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 C F ++ + L +L I D +V AA GS+ A+ +L Sbjct: 170 CQRYDFKRIALETIAGHLRELTRAEHIEVEDRALTYVAKAADGSLRDALSLL 221 >gi|167761782|ref|ZP_02433909.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC 43183] gi|167700288|gb|EDS16867.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC 43183] Length = 607 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 SPTAEGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN +S Sbjct: 174 IYDFNRIS 181 >gi|71900519|ref|ZP_00682648.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71729695|gb|EAO31797.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 541 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C C + D L + + N TG VD++R + Sbjct: 65 EQGTSADPCGRCTA--C----LDIDVGRYIDLLEIDAASN--TG-------VDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L E + + + ++ +I D+ + AA GS+ + +L Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL 221 >gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL J2-003] Length = 446 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|282848947|ref|ZP_06258336.1| hypothetical protein HMPREF1035_1178 [Veillonella parvula ATCC 17745] gi|282581222|gb|EFB86616.1| hypothetical protein HMPREF1035_1178 [Veillonella parvula ATCC 17745] Length = 346 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 26/271 (9%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + A +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFYGESGLGKLDMAIGLASLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N D K++ + L ++ ++ + P +T + V++ Sbjct: 62 GESYLAEVKEARLANGDT----EKRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N AN++LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANSMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TI SRC+ + FNS+ + + A I G D ++ +A +G+ K+ DC ++ Sbjct: 172 TIISRCMGVGFNSVDVDTIRTAFVARGITG-DIEQAL--LAGHGNPQLVEKLATQDCIEM 228 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQD 266 + + ++ I E M +A E LS++ Sbjct: 229 LELAVKVMDILAFETRWFTMISLACESLSRE 259 >gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri 224-1] gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri 224-1] Length = 602 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V +Q I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGVVDQTA-----ITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ +LL AF+ + Sbjct: 231 KV--KYDDALKITG--YAAQEKIEQVLLDLLKGQTSEAFEIV 268 >gi|295094180|emb|CBK83271.1| DNA polymerase III, subunits gamma and tau [Coprococcus sp. ART55/1] Length = 548 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + R+ HA LF G +G GK ++ +A Sbjct: 8 RKWRPDTFDEVKGQDHIVTTLRNQIKNDRLGHAFLFCGTRGTGKTSIAKIFA-------- 59 Query: 64 FSKAPVRMCN---PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + CN P SP + + A+ D SLN + VD IR+IR Sbjct: 60 ------KACNCEHPVDGSPCNECASCRAISD----GSSLNVIEIDAASNNGVDNIRQIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + S I TI SR Sbjct: 110 EVAYPPTEGKYKVYIIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKR---DFVKIAAYGSVARAIKIL 228 C F + + + LE+L G D+ + D++ + GS+ A+ IL Sbjct: 170 CQKYDFRRIPVDVISDRLEELMNREGLDADKKAIDYIAKSGDGSMRDALSIL 221 >gi|225571144|ref|ZP_03780142.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM 15053] gi|225159975|gb|EEG72594.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM 15053] Length = 521 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I K L + R+ HA LF G +G GK T+ +A V Sbjct: 5 RKFRPDEFEDVKGQDAIVKTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + +AS + + + + N VD IR IR ++ Sbjct: 65 VDGSPCGEC------AMCRTIASGTSMNVIEIDAASNN---------GVDNIREIREEVA 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 110 YRPTEGRFKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQR 169 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVK-IA--AYGSVARAIKIL 228 F +S + L +L + WD + V+ IA A GS+ A+ +L Sbjct: 170 YDFKRISIETISGRLRELIEKEEWDVEEKAVRYIARMADGSMRDALSLL 218 >gi|293379950|ref|ZP_06626051.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus 214-1] gi|290923463|gb|EFE00365.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus 214-1] Length = 601 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 45/298 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYA-LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 +Y D + I +A + +++I LL+QD A ++F E+ K A + Sbjct: 227 YEKESVNYDDALQITG--FADRENIEKILLALLNQDAGQA----LQFTQDELAKGASS 278 >gi|226325913|ref|ZP_03801431.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758] gi|225205455|gb|EEG87809.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758] Length = 522 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPAEFEDVKGQDHIITTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + N VD IR IR +S Sbjct: 68 VDGSPCGECT------MCKNIAAGTSMNVIEIDAASNN---------GVDNIREIREEVS 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + L++L ++ + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFKRITIDTIAARLDELMKKEQVEVEEKAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|167759644|ref|ZP_02431771.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704] gi|167662770|gb|EDS06900.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704] Length = 523 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I K L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + +A+ + + + + N VD IR IR ++ Sbjct: 68 VDGSPCGEC------AMCRSIAAGTSMNVIEIDAASNN---------GVDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVK-IA--AYGSVARAIKILHYDCDKIISSY 239 F +S + L +L GW+ + V+ IA A GS+ ++ +L D+ ++ Y Sbjct: 173 YDFKRISIETISDRLRELVDKEGWEVEEKAVRYIAKMADGSMRDSLSLL----DQCVAFY 228 Query: 240 I 240 I Sbjct: 229 I 229 >gi|325982932|ref|YP_004295334.1| DNA polymerase III, delta prime subunit [Nitrosomonas sp. AL212] gi|325532451|gb|ADZ27172.1| DNA polymerase III, delta prime subunit [Nitrosomonas sp. AL212] Length = 346 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 37/75 (49%), Positives = 54/75 (72%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +++IR++ F+ LT + +++I+I P + MN +ANALLK LEEPP+ VLFILI+H Sbjct: 114 IGIEQIRKLTDFVYLTGHQSGYKIILIYPAETMNTASANALLKKLEEPPENVLFILITHQ 173 Query: 170 SPTILSTIRSRCLSI 184 + +L TIRSRC I Sbjct: 174 AQHLLPTIRSRCQQI 188 >gi|46446112|ref|YP_007477.1| DNA polymerase III subunits gamma and tau [Candidatus Protochlamydia amoebophila UWE25] gi|46399753|emb|CAF23202.1| probable DNA-directed DNA polymerase III subunits gamma/tau dnaX [Candidatus Protochlamydia amoebophila UWE25] Length = 522 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 23/223 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 +I R F P + +FG E + L R+ A LF G +G GK TL +A + Sbjct: 6 VIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFAKAINC 65 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 QN P C +++ S + D L + + + +++IR+I Sbjct: 66 QNSTEDFEPCNQCTS------CREITSGSSLDVLEIDGASHRG---------IEDIRQIN 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A +G ++V +ID V + + A NALLK+LEEPP KV FI + + +L TI S Sbjct: 111 ETVGYAATSGQYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAY 218 RC +FN LS L + + +LK++ D + + +++ AY Sbjct: 171 RCQ--RFN-LSRIPLSQIMIKLKLIADQLEIDVEEEALQLLAY 210 >gi|225163994|ref|ZP_03726282.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801408|gb|EEG19716.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 388 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 18/209 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G + + + L R+ HA LF G +G GK + +A L Sbjct: 8 VIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFA-KALN 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D KA DP P VK + D + + + N +VD+IR +R Sbjct: 67 CTDGPKADF-----DPADPAVKSITDGTSMDVIEIDGASNN---------SVDQIRDLRD 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP+ V F+ + +L TI SR Sbjct: 113 DVRYAPTQGKFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSR 172 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSK 209 C + ++ + K L Q+ G D K Sbjct: 173 CQRFDLKPIPDDLIIKRLAQI---GADEK 198 >gi|227877637|ref|ZP_03995690.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256849090|ref|ZP_05554523.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|262047572|ref|ZP_06020527.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus MV-3A-US] gi|312977922|ref|ZP_07789668.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|227862785|gb|EEJ70251.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713866|gb|EEU28854.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|260572148|gb|EEX28713.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus MV-3A-US] gi|310895229|gb|EFQ44297.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 601 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 45/298 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYA-LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 +Y D + I +A + +++I LL+QD A ++F E+ K A + Sbjct: 227 YEKESVNYDDALQITG--FADRENIEKILLALLNQDAGQA----LQFTQDELAKGASS 278 >gi|310779061|ref|YP_003967394.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] gi|309748384|gb|ADO83046.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] Length = 486 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 150/352 (42%), Gaps = 47/352 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G EDI K + RM HA LF G +G+GK T A + L N Sbjct: 7 RKYRPSNFNEVAGEEDIIKTIKNSLRENRMAHAYLFAGPRGVGKTTTARLIAKGLNCLTN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + D + + + N +DEIR+++ Sbjct: 67 -GITDDPCDIC--DNCL----AVNEGNFVDMIEIDAASNR---------GIDEIRQLKDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID + + A NALLK+LEEPP VLFIL + IL TI SRC Sbjct: 111 INYRPARGRKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVLFILATTEPDKILPTIISRC 170 Query: 182 LSIKFNSLS-ENNLYKALEQLKIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIIS 237 F +S E+ + LE K G + + + A GS+ AI I +K+IS Sbjct: 171 QRYDFKPISFESTRDRLLEIGKSEGIEVDDESLLLIYEKAGGSMRDAISIF----EKLIS 226 Query: 238 S-YIDLIHIPRQ--------EYALQKMQQIADELLSQDQKIAFDFL------IEFILKEI 282 S Y + I I + E L + QIA E S D L IE +++ Sbjct: 227 SCYGESITIEKSQKVLGVIPEKQLMEFLQIAREGDSYKGVKFLDKLWNGSVNIESFFRDL 286 Query: 283 CKSAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 K +K L +L EE I + ++ + Y D+R + + +L K Sbjct: 287 AKLSKELMLKDELTPEEGMPIIGAIYDVITKFK----YEEDKRLLGYVILHK 334 >gi|269123513|ref|YP_003306090.1| DNA polymerase III, subunits gamma and tau [Streptobacillus moniliformis DSM 12112] gi|268314839|gb|ACZ01213.1| DNA polymerase III, subunits gamma and tau [Streptobacillus moniliformis DSM 12112] Length = 455 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 137/310 (44%), Gaps = 51/310 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L+G E I + + + ++ HA LF G +G+GK T+ A N Sbjct: 8 RKYRPQNFSELYGQEHIVRAIKNSLDNDKLSHAYLFNGPRGVGKTTIARLIAKGANCNSG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C K ++ D + + + N +DEIR Sbjct: 68 ITSNPCDDC--ENCKEITKGISV----DIIEIDAASNR---------GIDEIR------D 106 Query: 124 LTANTGYW------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L +TGY +V +ID V + + A NALLK LEEPP+ ++FIL + I T+ Sbjct: 107 LKESTGYLPVKCRKKVYIIDEVHMLTKEAFNALLKILEEPPKHIIFILATTEIEKIPDTV 166 Query: 178 RSRCLSIKFNSLSEN---NLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCD 233 SRC F ++SE N+ K + + + + D++ + + + GS + I + Sbjct: 167 ISRCQRYDFKTISETDIINMLKKVAKNENINIDTESLELIYSKSEGSARDSFSIF----E 222 Query: 234 KIISSYI--DLIHIPRQEYALQKMQQI-------------ADELLSQDQKIAFDFL-IEF 277 ++ S+Y D I I + E AL + +I DEL+S K+ + + I+ Sbjct: 223 QVTSNYYNEDEITIDKTEKALGVVSKIFYNNFTNLIIENKKDELISFIDKLWIEGIQIDQ 282 Query: 278 ILKEICKSAK 287 L++ CK K Sbjct: 283 FLRDFCKYIK 292 >gi|15838406|ref|NP_299094.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa 9a5c] gi|9106885|gb|AAF84614.1|AE004002_4 DNA polymerase III subunit [Xylella fastidiosa 9a5c] Length = 608 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C C + D L + + N TG VD++R + Sbjct: 65 EQGTSADPCGRCTA--C----LDIDVGRYIDLLEIDAASN--TG-------VDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L E + + + ++ +I D+ + AA GS+ + +L Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL 221 >gi|289435979|ref|YP_003465851.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 578 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIIQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNNG---------VEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE + + + +D K V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVTV---EDALEITGSVAQGLLTKLVSAAFD 258 >gi|218658746|ref|ZP_03514676.1| DNA polymerase III subunit delta' [Rhizobium etli IE4771] Length = 68 Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 45/61 (73%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 LLDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 N 61 + Sbjct: 68 H 68 >gi|285017408|ref|YP_003375119.1| DNA polymerase III tau and gamma subunits protein [Xanthomonas albilineans GPE PC73] gi|283472626|emb|CBA15131.1| probable dna polymerase III tau and gamma subunits protein [Xanthomonas albilineans] Length = 611 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 28/211 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALTNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S DPC + A D L + + N TG VD++R + Sbjct: 65 EQGTSA--------DPCGKCAACLDIDAGRYIDLLEIDAASN--TG-------VDDVREV 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ Sbjct: 108 IENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 SRCL +FN K L++++I G +K Sbjct: 168 SRCL--QFN-------LKRLDEMQIQGQMTK 189 >gi|257094046|ref|YP_003167687.1| DNA polymerase III subunit delta' [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046570|gb|ACV35758.1| DNA polymerase III, delta prime subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 348 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 101/220 (45%), Gaps = 40/220 (18%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-----------------------QNPDFSKA 67 ++ HALL G++GIGK L R+A +L +PD Sbjct: 19 AQLPHALLITGQRGIGKFDLARRFAESLLCENVTPAGSACGSCLACGWLAQGNHPD---- 74 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 +R+ PD + +S A+ K IT+D++R + FL L + Sbjct: 75 -LRLLQPDA---LAENESSEAVEGEGGGGRK------KASQQITIDQVRGLDAFLHLGTH 124 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 RV+++ P + MNR ANALLKSLEEP LFIL++ +L TIRSRC S+ Sbjct: 125 RHGVRVVLLSPAEAMNRATANALLKSLEEPIANTLFILVASEPHRLLPTIRSRCQSVPVR 184 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 S + + L Q + D+ D++ +A GS A+++ Sbjct: 185 RPSRHLAVQWLGQAGVN--DAIDDWLALAG-GSPLLAVEL 221 >gi|90413264|ref|ZP_01221258.1| hypothetical DNA polymerase III, delta prime subunit [Photobacterium profundum 3TCK] gi|90325665|gb|EAS42128.1| hypothetical DNA polymerase III, delta prime subunit [Photobacterium profundum 3TCK] Length = 325 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 19/187 (10%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 HE + Q R+HHA+L +G G+ LG + A VL C+ +P Sbjct: 6 HEALWHSWQQLLIQERLHHAILLLAPKGTGREILGQQLAQTVL---------CHNCDSEP 56 Query: 77 CSPF--VKQMASHALHDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C K A+ DF + + P + GK I VD +R+ + T+ RV Sbjct: 57 CGVCHSCKLFAAGTHPDF----HLIKPEQEGK---QIGVDAVRQCNRWAMETSQLAGQRV 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 IMID D M ANA+LK+LEEPP FIL + + ++L TI SRC + + E Sbjct: 110 IMIDCADSMGEAGANAILKTLEEPPSGCQFILTAQSLDSLLPTIVSRCNKWRMETPDEQF 169 Query: 194 LYKALEQ 200 + + +E+ Sbjct: 170 VKQWVEK 176 >gi|325264820|ref|ZP_08131548.1| putative DNA polymerase III, delta prime subunit [Clostridium sp. D5] gi|324029809|gb|EGB91096.1| putative DNA polymerase III, delta prime subunit [Clostridium sp. D5] Length = 331 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 114/217 (52%), Gaps = 22/217 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + GH++I +++ + ++ HA + GE+G GK L +A + QN R Sbjct: 7 VVGHKNIIQYIGNAVKTDKVSHAYIMNGEKGSGKKLLANLFAMSLQCQN--------REE 58 Query: 73 NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTG 129 + D C KQ ++ D + +++ P T +++D+IR ++ + + + Sbjct: 59 DGDACGKCQSCKQAMNNNQPDIIKVTHE-KPNT------VSIDDIREQVNNDIVIKPYSS 111 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++ +I D M+ A NA+LK++EEPP+ + +L++ + T+L TIRSRC+ +K ++ Sbjct: 112 RYKIYIIADADMMSVQAQNAILKTIEEPPEYAIIMLLTENAETLLPTIRSRCVMLKLRNI 171 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + K L EQ+++ D K D A G++ +AI Sbjct: 172 KDQLVKKYLMEQMQV--PDYKADVCVAFAQGNMGKAI 206 >gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus selenitireducens MLS10] gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus selenitireducens MLS10] Length = 600 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 145/339 (42%), Gaps = 42/339 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I + L ++ HA LF G +G GK + A V + Sbjct: 8 RVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAKAV----N 63 Query: 64 FSKAPVRM-CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +APV CN CS + ++ D + + + N VDEIR IR + Sbjct: 64 CEQAPVEEPCNT--CSTCTG-IQDGSIVDVIEIDAASNN---------GVDEIRDIRDKV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 112 KFAPSGASYKVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRD-----FVKIAAYGSVARAIKIL-----HYDC 232 F ++ + + K +E++ I D D + A+ G + A+ +L + D Sbjct: 172 RFDFKRITAHTMIKRMEEI-IEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADT 230 Query: 233 DKIISSYIDLIHIPRQEYALQKM-----QQIADEL-----LSQDQKIAFDFLIEFILKE- 281 + + +I Q+ M QQ+AD L L D K F+ +FI Sbjct: 231 SVTLDDVLSIIGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFMEDFIFLTR 290 Query: 282 ---ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + ++A A SG + DQ +I S + F++ Sbjct: 291 DLLMVQAAPALDESGDRKLGDQRFEILASKASQSWLFAL 329 >gi|171463390|ref|YP_001797503.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192928|gb|ACB43889.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 558 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P L G + + K L+ GR+HHA LF G +G+GK T+ R L N Sbjct: 8 RSWRPKTFSELVGQDHVVKALTHALDQGRLHHAWLFTGTRGVGKTTIA-RIMAKAL-NCT 65 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +M + +PC P ++ + D++ + + N VD+I + Sbjct: 66 GADGSGKMTS-EPCGKCPACMEIDAGRFVDYIEMDAASNRG---------VDDIASLLEK 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V + +A NA+LK+LEEPP+ V FIL + I TI SRC Sbjct: 116 AAYAPSNGRYKVYVIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTILSRC 175 Query: 182 LSIKFNSLSENNLYKALEQL 201 L + + + LE++ Sbjct: 176 LQFNLKQMPVPLIVEHLEKV 195 >gi|71906445|ref|YP_284032.1| AAA ATPase, central region [Dechloromonas aromatica RCB] gi|71846066|gb|AAZ45562.1| AAA ATPase, central region [Dechloromonas aromatica RCB] Length = 537 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 17/187 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRNFSTLVGQEHVVRALTHALSEQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ S D L + + N + VDE+R++ Sbjct: 65 ETGITATPCGTCS------ACQEIDSGRFVDLLEVDAATNTR---------VDEMRQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++ +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 NAVYAPTRGRFKVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFN 187 CL +FN Sbjct: 170 CL--QFN 174 >gi|331092561|ref|ZP_08341382.1| hypothetical protein HMPREF9477_02025 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400673|gb|EGG80279.1| hypothetical protein HMPREF9477_02025 [Lachnospiraceae bacterium 2_1_46FAA] Length = 329 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 22/216 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH DI +++ ++ HA + GE+G GK L +A LQ + + Sbjct: 7 VIGHNDIIQYIQNAVSQDKVSHAYILNGERGSGKKMLADLFA-MTLQCEEHT-------- 57 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 P+PC KQ S D +++++ P T I+VD+IR ++ + + + Sbjct: 58 PNPCGECHSCKQAKSGNHPDIIHVTHE-KPNT------ISVDDIRTQVNNDIVIKPYSSP 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +I D ++ A NALLK++EEPP + L++ + ++L TI SRC+ +K ++ Sbjct: 111 YKIYIIPEADLLSVQAQNALLKTIEEPPAYAVIFLLTENAESLLPTIMSRCVMLKLRNIK 170 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L EQ++I D + D A G++ RAI Sbjct: 171 TTLIKKYLMEQMQI--PDYQADICAEFAQGNMGRAI 204 >gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] Length = 615 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|189464151|ref|ZP_03012936.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM 17393] gi|189437941|gb|EDV06926.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM 17393] Length = 616 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 SPTAEGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN ++ Sbjct: 174 IYDFNRIN 181 >gi|148977687|ref|ZP_01814248.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium SWAT-3] gi|145963055|gb|EDK28324.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium SWAT-3] Length = 747 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K R ++ + + R Sbjct: 68 ITSTPCGECA------TCKEIDEGRFVDLLEIDAASRTKLEDTRELLDNVQYKPAR---- 117 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 118 -----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+++ LEQ K+ + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIHEQLDHILEQEKVTSESRALGMIAHAADGSMRDALSL 220 >gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 1816] Length = 579 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + E AL+ +A LL++ AFD Sbjct: 229 SEEVAV---EDALEITGSVAQNLLTKLVSAAFD 258 >gi|229816417|ref|ZP_04446718.1| hypothetical protein COLINT_03470 [Collinsella intestinalis DSM 13280] gi|229807959|gb|EEP43760.1| hypothetical protein COLINT_03470 [Collinsella intestinalis DSM 13280] Length = 381 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 123/283 (43%), Gaps = 41/283 (14%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + FL++ SGR HA LF G G GK + A +L D C D C Sbjct: 20 VRDFLARAVTSGRASHAYLFLGSPGSGKLDAAWALAQALLCGEDGVSGACASC--DDCG- 76 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++A D Y + P++ T + + R + ++L +V ++D Sbjct: 77 ---RVARRTHPDVHYFA----PESA---TGYLIAQTRELLEDVALAPIRAKAKVYIVDRA 126 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + + N ANALLK+LEEPP V FIL+ ++ +L TI SRC + F LS + A+E Sbjct: 127 EQLRANTANALLKTLEEPPAGVTFILLGSSADAMLPTIVSRCQCVPFRPLSLEDAATAVE 186 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARAIKIL--------------------HYDCDKIISSY 239 G + + + +A GS ARA++ L H D I+++ Sbjct: 187 H--ATGLPAGKCRMAVAVAGSPARAVEFLKSGDRQTARRAMVRAVDLLAHADEADILAAA 244 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 DL+ + A K Q A +L Q+Q D+L LK++ Sbjct: 245 KDLMGAIKAPLAEVKSTQQA--VLEQNQ----DYLSRGALKQL 281 >gi|118594959|ref|ZP_01552306.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181] gi|118440737|gb|EAV47364.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181] Length = 544 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 23/248 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + ++ R+HHA LF G +GIGK T+ A + Sbjct: 5 VLARKWRPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + L + N TG VD + + Sbjct: 65 EQGISSKPCLTCSA------CQEIDVGRYVDLIELDAASN--TG-------VDNMIDLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPSSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSR 169 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 CL ++ N L L + KI + AA GS+ A+ IL Y Sbjct: 170 CLQFNLKQMTTENIASHLTSILTEEKIGSESGAIQIIAKAANGSMRDALSILDQAIAYSS 229 Query: 233 DKIISSYI 240 +KI + + Sbjct: 230 EKISTEKV 237 >gi|295692238|ref|YP_003600848.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus crispatus ST1] gi|295030344|emb|CBL49823.1| DNA polymerase III, gamma/tau subunit [Lactobacillus crispatus ST1] Length = 601 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 129/303 (42%), Gaps = 46/303 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++ D + + + N G VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL--------- 228 F +S+ +L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 229 --HYDCDKIISSYIDLIHIPR------QEYALQKMQQIADELL-SQDQKIAFDFLIEFIL 279 +YD I+ + D +I + + A Q +Q DEL K D +I+ Sbjct: 231 SVNYDDALQITGFADRENIEKILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTT 290 Query: 280 KEI 282 K + Sbjct: 291 KSL 293 >gi|294793439|ref|ZP_06758576.1| putative DNA polymerase III, delta prime subunit [Veillonella sp. 3_1_44] gi|294455009|gb|EFG23381.1| putative DNA polymerase III, delta prime subunit [Veillonella sp. 3_1_44] Length = 346 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 23/210 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + A +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFHGESGLGKLDMAIGLASLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N D K++ + L ++ ++ + P +T + V++ Sbjct: 62 GESYLAEVKEARLANGDT----EKRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N ANA+LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 TI SRC+ + FNS+ + + AL I G Sbjct: 172 TIISRCMGVGFNSVDVDTIRTALVARGITG 201 >gi|94676847|ref|YP_588586.1| DNA polymerase III, subunits gamma and tau [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219997|gb|ABF14156.1| DNA polymerase III, subunits gamma and tau [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 384 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 19/224 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ + GR+HHA LF G +G+GK T+ A + Sbjct: 6 VLARKWRPQKFTDVVGQEHVITALTNSFLLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P CN + ++ ++ D + + + K V++ R I Sbjct: 66 QDGITTNPCNKCNN------CRDISQNSFIDLIEIDAASRTK---------VEDTREILD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L G ++V +ID V ++R + NALLK+LEEPP + FIL + I TI SR Sbjct: 111 NLQYAPVYGRFKVYLIDEVHMLSRYSFNALLKTLEEPPVHIKFILATTDLHKIPMTILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 CL LS N + L+ + I S++ V+ A +ARA Sbjct: 171 CLQFHLKPLSVNQICNQLKYILI----SEKIHVEQYALHLLARA 210 >gi|302390841|ref|YP_003826661.1| DNA polymerase III subunit delta' [Acetohalobium arabaticum DSM 5501] gi|302202918|gb|ADL11596.1| DNA polymerase III, delta prime subunit [Acetohalobium arabaticum DSM 5501] Length = 329 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 38/209 (18%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV--KQMASHAL 89 R++HA LF G++G+GK ++A + + D C + ++ S Sbjct: 24 RVNHAYLFAGKKGVGKEFTAVQFAKAL---------NCKERKSDACGECISCRKFNSGNH 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY------WRVIMIDPVDGMN 143 D + ++ P+ GK+ I +D+IR SL NT Y W++ +I D MN Sbjct: 75 PDIV----NIEPE-GKY---IKIDQIR------SLQQNTSYKPYESEWKIYIIKQADRMN 120 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AAN LL++LEEPP+ V+ IL++ +L TI SRC IKF +L+ + + L I Sbjct: 121 LQAANGLLRTLEEPPKYVVIILLASKEDLLLPTITSRCQIIKFRTLTVDEITDRL----I 176 Query: 204 MGWDSKR---DFVKIAAYGSVARAIKILH 229 ++ R + + I A GS+ +AI+ + Sbjct: 177 SRFELDRAEAEKIAILADGSLGKAIEFIE 205 >gi|156975175|ref|YP_001446082.1| DNA polymerase III subunit delta' [Vibrio harveyi ATCC BAA-1116] gi|156526769|gb|ABU71855.1| hypothetical protein VIBHAR_02902 [Vibrio harveyi ATCC BAA-1116] Length = 320 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 50/329 (15%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + QG+ L ++ H L +++ C+ S + Q SH Sbjct: 21 SERVPGALLLQSAQGLAVEKLVELFS-HSLLCQNYTSEACGFCH----SCQLTQSNSHP- 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD+IR ++ +RV +I+P D MN +A+NA Sbjct: 75 -DLHWIKPE---KEGK---SITVDQIRACNRLAHESSQLNGYRVFIIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK+LEEP QK LF+L++H +L TI+SRC S + M W S+ Sbjct: 128 LLKTLEEPGQKCLFLLVTHNQERLLPTIQSRCQQWVVTLPSTE---------QAMSWMSE 178 Query: 210 RDFVKIAAYG---------SVARAIKILHYDCDKIIS-SYIDLIHIPRQEYALQKMQQIA 259 + +K+ AY + A+K D + S I+ + P + + Q A Sbjct: 179 QGSLKVPAYALKLNMGSPINTLEAVKSGELDEYQAFERSLIEALSSPASD-----VFQCA 233 Query: 260 DELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-----------IAQIYFSL 308 L++++ A D+ ++L + K+ A + QL AD+ +AQ L Sbjct: 234 S-LMAKNPDKALDWAW-YLLTDAQKAQFGVAEADQLPGADKFQPNNYNGLYSVAQKLLEL 291 Query: 309 VKRVHAFSMYNLDRRQMIFHLLSKARECN 337 ++ F NL+ M + + S+ C+ Sbjct: 292 KAQMQTFPGLNLELLSMNWLIESREALCS 320 >gi|71275385|ref|ZP_00651671.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71898557|ref|ZP_00680728.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|170730362|ref|YP_001775795.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M12] gi|71163685|gb|EAO13401.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71731681|gb|EAO33741.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|167965155|gb|ACA12165.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 601 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C C + D L + + N TG VD++R + Sbjct: 65 EQGTSADPCGRCTA--C----LDIDVGRYIDLLEIDAASN--TG-------VDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L E + + + ++ +I D+ + AA GS+ + +L Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL 221 >gi|119503324|ref|ZP_01625408.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2080] gi|119460970|gb|EAW42061.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2080] Length = 322 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 19/179 (10%) Query: 6 FDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 P N L + H +E+ LS ++ HA+L G +G+GK L +A +L Sbjct: 7 LKPWLNSALPWQHGTLER-LSSLEQQEKLPHAILLTGARGLGKTQLAASFATGLL----- 60 Query: 65 SKAPVRMCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +PC Q+A H DF +++ P+ GK I VD IR F+ Sbjct: 61 ----CEARGVEPCGSCASCQLAGGGAHGDFRWIA----PEEGK--RAIGVDAIRSAVTFM 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T+ G +V++I+P + M AANALLK+LEEPP K L IL+SH S + +T+RSRC Sbjct: 111 QQTSGYGSHKVLVIEPAEAMTAAAANALLKTLEEPPGKALLILVSHRSGELPATVRSRC 169 >gi|580855|emb|CAA29958.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 422 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F ++ + + EQL++ + + + AA G + A+ +L D+ Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQV--EEGSLEIIASAADGGMRDALSLL----DQA 224 Query: 236 ISSYIDLIHI 245 IS D++ + Sbjct: 225 ISFSGDILKV 234 >gi|300113235|ref|YP_003759810.1| DNA polymerase III gamma and tau subunit [Nitrosococcus watsonii C-113] gi|299539172|gb|ADJ27489.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus watsonii C-113] Length = 529 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 35/293 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + + L+ GR+HHA LF G +G+GK TL +L Sbjct: 5 VLARKWRPCDFSQVVGQEQVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLA-----RILA 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K VR PC A + + +TG VD+ R + Sbjct: 60 KSLNCKEGVRST---PCGKCQNCQAIDGGNFVDLIEVDAASRTG-------VDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G+++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGHYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTDPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDC 232 CL ++ +L + L+ KI + AA GSV A+ +L +Y Sbjct: 170 CLQFNLRRIASKVIAEHLARILQAEKIPSESHALTLIARAAEGSVRDALSLLDQAINYGG 229 Query: 233 DKIISS--YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 ++I + Y L I + E + + D LL+ D + LIE + +EIC Sbjct: 230 GQVIVADVYAMLGSIEQGELFI-----LLDALLAGDGQ----GLIEKV-REIC 272 >gi|225026633|ref|ZP_03715825.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353] gi|224956003|gb|EEG37212.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353] Length = 571 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 27/243 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L R+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPSDFDEVKGQDAIVQTLRNQIIYNRIGHAYLFCGTRGTGKTSIAKLFAKAV----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV N +PC+ P + + + + D L + + N V+ IR IR Sbjct: 63 NCEHPV---NGNPCNACPSCQAINNQSSLDVLEIDAASNNG---------VENIRDIREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYSPVEGRYKVYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEKHKIPVTILSRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S N+L +E+ K+ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QKYDFKRISVDTITNHLVSLMEKEKVDADEKALRYIARAADGSMRDALSLL----DQCIA 226 Query: 238 SYI 240 Y+ Sbjct: 227 FYL 229 >gi|160882031|ref|YP_001560999.1| DNA polymerase III, delta prime subunit [Clostridium phytofermentans ISDg] gi|160430697|gb|ABX44260.1| DNA polymerase III, delta prime subunit [Clostridium phytofermentans ISDg] Length = 330 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 120/242 (49%), Gaps = 37/242 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I L + ++ HA +F+GE GIGK + +A +L C+ Sbjct: 7 VIGHEEIVNHLQNAIKTNKVSHAYIFQGEDGIGKNFVANIFAAALL------------CS 54 Query: 74 PDPCSPFVK-----QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTAN 127 +P K Q S D +++ + I VD+IR ++ +++ Sbjct: 55 EHGTNPCTKCKSCLQAVSGNQPDIRRITHE--------KASIGVDDIRLQLNNDIAIKPY 106 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G +++ +ID + M A NALLK++EEPP + +L+++ S + L TI SRC+ + F Sbjct: 107 VGPYKIYIIDEAEKMTEQAQNALLKTIEEPPGYAIILLLTNNSNSFLPTILSRCVLLNFK 166 Query: 188 SLSENNLYKAL-EQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSYIDLI 243 ++ +N + + L ++ I+ + + +I+A G++ +AIK + ++ + D+I Sbjct: 167 AVDKNKIKQYLIDEEHIVEYQA-----QISASFSGGNLGKAIK--YATSERFVKMKEDII 219 Query: 244 HI 245 H+ Sbjct: 220 HL 221 >gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex] Length = 556 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 144/336 (42%), Gaps = 31/336 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 ++ R + P ++ G + + +SQ R+ H LF G +GIGK T A ++ Sbjct: 28 VLARKYRPRRFSQVVGQNILVRLISQALKRDRLGHGFLFSGMRGIGKTTTARLLACYLNC 87 Query: 59 --LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 L+ + P +C D C F + H D + + + + TG VD+IR Sbjct: 88 LNLRQTEGEIEPCGVC--DSCRAF--EAEKHI--DIIEMDAASH--TG-------VDDIR 132 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I G ++V +ID V +++NA NALLK+LEEPP+ V FI + +L T Sbjct: 133 EILEACRYRPVLGRYKVFIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIQKVLPT 192 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 + SRCL L L L+ + + + D + + A G AR D Sbjct: 193 VVSRCLRFDLKRLDPAVLVPYLQDICTKETIKADPEALLLLAQAGGGSAR-------DSL 245 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 ++ I L QE + Q + L D+K AF L E IL+ K++ A S Sbjct: 246 SLLDQAILLAEQQSQENPCIQAQDVGQMLGLLDRK-AFHTLFEAILQGDAKASVETAQSL 304 Query: 294 QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + E D + ++ L VH S + ++ + + Sbjct: 305 EGEGIDPL-RVMEELSTFVHHLSCLKVGVKEGLLGM 339 >gi|240146665|ref|ZP_04745266.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis L1-82] gi|257201209|gb|EEU99493.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis L1-82] Length = 526 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P + +A+ + + + + N VD IR+IR + Sbjct: 68 VDGSPCGEC------PACRAIAAGNSMNVIEIDAASNNG---------VDNIRQIREEVE 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S L + +E+ ++ + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus OF4] gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus OF4] Length = 561 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I K L + HA LF G +G GK + A + + Sbjct: 8 RVWRPQQLRDVVGQEHITKTLQNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAI----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KAPV +PC+ K + S A+ D + + + N VDEIR IR Sbjct: 64 CEKAPV----AEPCNECAACKGITSGAIVDVMEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKFAPNEVPYKVYIIDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + + + ++ I D + + AA G + A+ +L Sbjct: 171 QRFDFKRIPNTAIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLL 221 >gi|295089991|emb|CBK76098.1| DNA polymerase III, delta' subunit [Clostridium cf. saccharolyticum K10] gi|295115370|emb|CBL36217.1| DNA polymerase III, delta' subunit [butyrate-producing bacterium SM4/1] Length = 329 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 16/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I+ + ++ HA + GEQG+G+ TL +A +L K P C+ Sbjct: 7 IIGHEMIKDHFQKAIEYHKVSHAYILSGEQGMGRKTLAKAFAMTLLCEKS-DKEPCMECH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D +++++ P + I VD+IR ++ + + + ++ Sbjct: 66 S------CKQILSGNHPDVIWVTHE-KPNS------IGVDDIREQLNDTIQIKPYSSAYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + M A NALLK++EEPP + IL++ L TI SRC+ +K L + Sbjct: 113 IYLVDEAEKMTVQAQNALLKTIEEPPSYAVIILMTTNEEAFLPTILSRCIKLKLRPLKDQ 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L + +G +S+ D A G++ +AI + Sbjct: 173 TVSSYLMESMGIG-ESQADIYAAFARGNLGKAIHL 206 >gi|283797153|ref|ZP_06346306.1| ATPase [Clostridium sp. M62/1] gi|291075570|gb|EFE12934.1| ATPase [Clostridium sp. M62/1] Length = 329 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 16/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I+ + ++ HA + GEQG+G+ TL +A +L K P C+ Sbjct: 7 IIGHEMIKDHFQKAIEYHKVSHAYILSGEQGMGRKTLAKAFAMTLLCEKS-DKEPCMECH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D +++++ P + I VD+IR ++ + + + ++ Sbjct: 66 S------CKQILSGNHPDVIWVTHE-KPNS------IGVDDIREQLNDTIQIKPYSSAYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + M A NALLK++EEPP + IL++ L TI SRC+ +K L + Sbjct: 113 IYLVDEAEKMTVQAQNALLKTIEEPPSYAVIILMTTNEEAFLPTILSRCIKLKLRPLKDQ 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L + +G +S+ D A G++ +AI + Sbjct: 173 TVSSYLMESMGIG-ESQADIYAAFARGNLGKAIHL 206 >gi|283796874|ref|ZP_06346027.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1] gi|291075280|gb|EFE12644.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1] gi|295089888|emb|CBK75995.1| DNA polymerase III, subunits gamma and tau [Clostridium cf. saccharolyticum K10] Length = 555 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G + I K L SGR+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPVSFGDVKGQDPIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + H + SLN + V+ IR IR + Sbjct: 68 VDGSPCNEC----------ETCRHIME-----GSSLNVVEIDAASNNGVENIREIREQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YPPTEGTYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKIL 228 F +S + + L +L + +G + + +V AA GS+ A+ +L Sbjct: 173 YDFKRISLDTIADRLRELTEAEHIGVEERALRYVAKAADGSMRDALSLL 221 >gi|209545026|ref|YP_002277255.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] gi|209532703|gb|ACI52640.1| DNA polymerase III, subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] Length = 687 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 118/280 (42%), Gaps = 26/280 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L + GR+ HA + G +G+GK T R L Sbjct: 59 VLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTA-RIIARALN 117 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD + P DPC +A A L +TG VD++R I Sbjct: 118 CVGPDGTGGP----TADPCGVCANCVAILADRHPDVLEMDAASRTG-------VDDVREI 166 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 G +V +ID V ++RNA NALLK+LEEPP +V F+ + + T+ Sbjct: 167 IEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVL 226 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDK 234 SRC + +++L ++ + G + D + + AA GSV + +L D+ Sbjct: 227 SRCQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLL----DQ 282 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I+ + A +++AD L D+ FD L Sbjct: 283 AIAQG----SVEGDGAAPIGAERVADMLGLADRGRVFDLL 318 >gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii FI9785] gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii FI9785] Length = 602 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ LL+ + A + + Sbjct: 231 KV--KYEDALRITG--YAAQEKIEQVLLNLLNGETSAALEIV 268 >gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 602 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ LL+ + A + + Sbjct: 231 KV--KYEDALRITG--YAAQEKIEQVLLNLLNGETSAALEIV 268 >gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552] gi|169291842|gb|EDS73975.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552] Length = 593 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 147/339 (43%), Gaps = 43/339 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P + G E I L R+ HA LF G +G GK T+ A + D Sbjct: 8 RSYRPQTFDEVAGQEHIVTTLKNAIKENRIAHAYLFAGPRGTGKTTVAKLLAKALNCTGD 67 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 NP PC P K + + D + + + N VDE+R + Sbjct: 68 ---------NP-PCDNCPNCKAITASQHPDVIEIDAASNN---------GVDEVRDLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M++ A NALLK+LEEPP ++FIL + IL TI SRC Sbjct: 109 VKYAPINGKYKVYIIDEVHMMSQGAFNALLKTLEEPPAHIIFILATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA---AYGSVARAIKILHYDCDKIIS 237 F + + ++ LE LK + + D +K+ A G + A+ IL C Sbjct: 169 QRFDFKKVDDQDIVSRLEYVLKNENKEYELDALKLVAKLAEGGMRDALSILE-QC----L 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y D + I ++ K+ LLS D KI F I+ +L + KS +L L Sbjct: 224 AYNDKLSID----SVNKVYG----LLSMDNKIIF---IKKLLSQDLKSV-LQSLDNMLST 271 Query: 298 ADQIAQIYFSLVKRVHAFSMY-NLDRRQMIFHLLSKARE 335 + I ++ + L+ + +Y N ++F L K E Sbjct: 272 SIDIKRLTYDLIDVLKDVIIYKNTQDASILFVLTQKDVE 310 >gi|255284258|ref|ZP_05348813.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens DSM 14469] gi|255265211|gb|EET58416.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens DSM 14469] Length = 541 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + + + L SGR+ HA LF G +G GK T+ A V Sbjct: 8 RKFRPDTFADVKGQDAVVQTLKNQIKSGRVGHAYLFCGTRGTGKTTIAKIMAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P CN C+ A +L+ + S N VD IR IR +S Sbjct: 68 VDGSP---CNE--CATCRAIAAGSSLNVIEIDAASNN----------GVDNIREIREEVS 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + + TI SRC Sbjct: 113 YSPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEANKLPVTILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + + + L++L K+ D ++ A G++ A+ +L Sbjct: 173 YDFKRIPVATIEERLQELLAAEKLEAEDKAVRYIARKADGALRDALSLL 221 >gi|87310760|ref|ZP_01092887.1| DNA polymerase III, tau/gamma subunit [Blastopirellula marina DSM 3645] gi|87286517|gb|EAQ78424.1| DNA polymerase III, tau/gamma subunit [Blastopirellula marina DSM 3645] Length = 357 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 27/225 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCN 73 GH+ ++ GR+ LF G +GK + A +L NP P C Sbjct: 8 GHDAVQAKFRTAVARGRLASTFLFVGPPAVGKRKFALKLAEALLCEVNPPADLNPCGKC- 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI-----RRIRYFL----SL 124 + C Q+ +H+ D + +S N RT I VD + R+R L +L Sbjct: 67 -ESCV----QVRAHSHPDLILVSRPAN------RTRIPVDLLIGDGQNRMRAGLCHDITL 115 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G +V +ID D +N AN LLK+LEEPP K + IL+S + L TIRSR I Sbjct: 116 RPYRGGRKVAIIDDADYLNVEGANCLLKTLEEPPPKSVMILLSTSLQRQLPTIRSRSQII 175 Query: 185 KFNSLSENNLYKAL--EQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +F+ LS N + AL EQ + + R ++ +GS+ RA+++ Sbjct: 176 RFDPLS-NEVIAALLVEQGVVAELEEARVLAEL-GHGSLERAMQV 218 >gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio ammonificans HB-1] gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio ammonificans HB-1] Length = 460 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 24/224 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 I R + P ++ G + I K L SGR HA +F G +G+GK T R L Sbjct: 6 IPRKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAYIFAGPRGVGKTTTA-RIVAKALNC 64 Query: 60 QNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 +NP + +PC+ P +++ A D + + + N +D+IR Sbjct: 65 ENP---------TDGEPCNSCPQCLEISKGAHPDVIEVDAATN---------RGIDQIRE 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + G +V +ID + + A NALLK+LEEPP+ +FIL + I TI Sbjct: 107 LRESVHYAPARGKRKVYIIDEFHMLTKEAFNALLKTLEEPPEHAVFILATTEIDKIPPTI 166 Query: 178 RSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGS 220 SRC F + + + LE++ + G + R+ +++ A S Sbjct: 167 LSRCQKFLFRKVPRELIVETLERICRSEGVEFDREALELIAVAS 210 >gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL F2-515] Length = 289 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 26/271 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 1 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHD 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C K ++ D L + + N V+EIR IR + Sbjct: 61 GEPCNECE------ICKGTTDGSIPDVLEIDAASNNG---------VEEIRDIREKVKYA 105 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 106 PTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFD 165 Query: 186 FNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++ ++ LE+ KI + V AA G + A+ +L D++IS + Sbjct: 166 FKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYGSE 221 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + E AL+ +A LL++ AFD Sbjct: 222 EVTV---EDALEITGSVAQNLLTKLVSAAFD 249 >gi|42525061|ref|NP_970441.1| DNA polymerase III gamma and tau subunits [Bdellovibrio bacteriovorus HD100] gi|39577272|emb|CAE81095.1| DNA polymerase III gamma and tau subunits [Bdellovibrio bacteriovorus HD100] Length = 621 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G I + LS +GR+ HALLF G +G GK T R L+ Sbjct: 21 VIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGK-TSSARILAKALR 79 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P+ N PC+ ++A + D + + + N VD IR + Sbjct: 80 CPNAQ-------NFVPCNDCYSCNEIAGGSSIDVIEIDGASNN---------GVDAIREL 123 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R ++ ++G +++ +ID V ++ +A NALLK+LEEPP V+FI+ + I TI Sbjct: 124 RDTVAFMPSSGKYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTIL 183 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC F +S ++ + L+ Sbjct: 184 SRCQRFDFRRISTRSITERLK 204 >gi|295402712|ref|ZP_06812654.1| DNA polymerase III, subunits gamma and tau [Geobacillus thermoglucosidasius C56-YS93] gi|312109169|ref|YP_003987485.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y4.1MC1] gi|294975243|gb|EFG50879.1| DNA polymerase III, subunits gamma and tau [Geobacillus thermoglucosidasius C56-YS93] gi|311214270|gb|ADP72874.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y4.1MC1] Length = 561 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ P + + + D L + + N + VDEIR IR Sbjct: 64 CEHAP----TAEPCNECPACIGITNGTIPDVLEIDAASNNR---------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + ++ L +EQ + D + AA G + A+ +L Sbjct: 171 QRFDFRRIPLHSIVARLRHVMEQQGMTASDEALFAIARAADGGMRDALSLL 221 >gi|221307828|ref|ZP_03589675.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. 168] gi|221312150|ref|ZP_03593955.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317083|ref|ZP_03598377.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. JH642] gi|221321346|ref|ZP_03602640.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. SMY] gi|255767015|ref|NP_387900.2| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. 168] gi|239938906|sp|P09122|DPO3X_BACSU RecName: Full=DNA polymerase III subunit gamma/tau gi|225184642|emb|CAB11795.2| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis subsp. subtilis str. 168] Length = 563 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F ++ + + EQL++ + + + AA G + A+ +L D+ Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQV--EEGSLEIIASAADGGMRDALSLL----DQA 224 Query: 236 ISSYIDLIHI 245 IS D++ + Sbjct: 225 ISFSGDILKV 234 >gi|158523216|ref|YP_001531086.1| DNA polymerase III, delta prime subunit [Desulfococcus oleovorans Hxd3] gi|158512042|gb|ABW69009.1| DNA polymerase III, delta prime subunit [Desulfococcus oleovorans Hxd3] Length = 332 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 18/214 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + L+ G + HA LF G GIGK A +GF A + L PV + D P Sbjct: 8 RTLAGILARGDIPHAFLFTGIDGIGKRSAAMGFAMACNCLAAVQEKPLPVPVPG-DSGLP 66 Query: 80 FV------KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 F + +A+ D + ++ N I + IR + ++ + R Sbjct: 67 FCGTCRICRAIAAGTHPDVITIAPEGN--------AIKIGRIRELIEKVAFRPHEAKMRA 118 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++I MN AANALLKSLEEPP + LF L + + +L T+ SRC I+F +S + Sbjct: 119 VIISDAWAMNPEAANALLKSLEEPPPQTLFFLTAEHASDLLPTVVSRCRHIRFAPVSADR 178 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L+Q + + R + + GSVARA+ + Sbjct: 179 IAAFLQQHHGVDEKAARS-AALMSGGSVARALAL 211 >gi|153815986|ref|ZP_01968654.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756] gi|317500926|ref|ZP_07959136.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089174|ref|ZP_08338077.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846633|gb|EDK23551.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756] gi|316897629|gb|EFV19690.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|330405951|gb|EGG85477.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium 3_1_46FAA] Length = 539 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPAEFGDVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + N VD IR IR ++ Sbjct: 68 VDGSPCGECE------MCKSIAAGTSMNVIEIDAASNNG---------VDNIREIREEVT 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQH 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S + + +++L + D ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFKRISIETITERMQELMDTEHVEAEDKALRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|238922752|ref|YP_002936265.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale ATCC 33656] gi|238874424|gb|ACR74131.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale ATCC 33656] Length = 523 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P + + + + + + + N VD IR+IR ++ Sbjct: 68 VDGSPCGEC------PSCRAITEGSSMNVIEIDAASNN---------GVDNIRQIREEVT 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ +S + L +EQ + + +V A GS+ A+ +L Sbjct: 173 YDFHRISIDTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLL 221 >gi|467409|dbj|BAA05255.1| DNA polymerase III subunit [Bacillus subtilis] gi|580914|emb|CAA34877.1| dnaZX [Bacillus subtilis] Length = 563 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I K L + HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K + + ++ D + + + N VDEIR IR Sbjct: 64 CEHAPVD----EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F ++ + + EQL++ + + + AA G + A+ +L D+ Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQV--EEGSLEIIASAADGGMRDALSLL----DQA 224 Query: 236 ISSYIDLIHI 245 IS D++ + Sbjct: 225 ISFSGDILKV 234 >gi|291278501|ref|YP_003495336.1| hypothetical protein DEFDS_0068 [Deferribacter desulfuricans SSM1] gi|290753203|dbj|BAI79580.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 262 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKA--TLGFRYAGHVLQNPDFSKAPVRMCN 73 GH+ ++ + + H A +F G +G+GK + A H F + C+ Sbjct: 4 GHKHLKSYFKTILINDTFHPAYIFAGNEGVGKKFFAINLAKAAHCKDEKFFEE-----CS 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C Q+ + D + L+ +T+D IR + L++ TG + Sbjct: 59 CNSCI----QIDQNTHPDVILLN----------ENDLTIDNIRDLNERAFLSSFTGKRKF 104 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++D + R AANA+LK+LEEPP FIL++H I+ TIRSRC+ I F+ L ++ Sbjct: 105 FILDNFHKIKREAANAMLKTLEEPPLDTTFILVTHNYEMIIPTIRSRCIKINFHRLPKDE 164 Query: 194 L 194 + Sbjct: 165 I 165 >gi|283779875|ref|YP_003370630.1| DNA polymerase III gamma/tau subunits-like protein [Pirellula staleyi DSM 6068] gi|283438328|gb|ADB16770.1| DNA polymerase III gamma/tau subunits-like protein [Pirellula staleyi DSM 6068] Length = 369 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 17/223 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 + GH D+ GRM L G GIGK T + A +L +PD Sbjct: 12 VVGHLDVVSRFEAMLAGGRMASTFLLVGPSGIGKRTFAIQLAKALLCKHSPDGRLKACGR 71 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR----YFLSLTAN 127 C P Q+ S + D +S + +I D+ R+R Y LSL Sbjct: 72 C------PDCLQVDSLSHTDLQVISKPADKAFIPLELLIG-DKEHRMRAGLCYDLSLRPR 124 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++ +ID D +N+ ANALLK+LEEPP + + +L+ + L TIRSRC I+ + Sbjct: 125 DGGRKIAIIDDADYLNKEGANALLKTLEEPPPRSVLMLLGTSEQRQLPTIRSRCQIIRMS 184 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKIL 228 L E ++ L + ++ DS KIA GS+ +AI +L Sbjct: 185 RLHETSIADLLVRHQLC--DSPELAAKIAGLSAGSMQQAILLL 225 >gi|225374828|ref|ZP_03752049.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM 16841] gi|225213397|gb|EEG95751.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM 16841] Length = 523 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPQEFEDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P K +A+ + + + + + N VD IR+IR + Sbjct: 68 VDGSPCGEC------PTCKAIAAGSSMNVIEIDAASNNG---------VDNIRQIREEVE 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S + + L E+ ++ + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRISIDTIAGRLTYLMEKEQVNVEERAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|329956773|ref|ZP_08297342.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT 12056] gi|328523812|gb|EGF50899.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT 12056] Length = 647 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 49 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 106 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 107 APTAEGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 153 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 154 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 213 Query: 183 SIKFNSLS 190 FN + Sbjct: 214 IYDFNRIG 221 >gi|257790899|ref|YP_003181505.1| DNA polymerase III, delta prime subunit [Eggerthella lenta DSM 2243] gi|317488388|ref|ZP_07946943.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325830526|ref|ZP_08163979.1| DNA polymerase III, delta' subunit [Eggerthella sp. HGA1] gi|257474796|gb|ACV55116.1| DNA polymerase III, delta prime subunit [Eggerthella lenta DSM 2243] gi|316912508|gb|EFV34062.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325487435|gb|EGC89876.1| DNA polymerase III, delta' subunit [Eggerthella sp. HGA1] Length = 383 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 11/220 (5%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G + +FL G++ HA LF G G K + +A VL P + P R Sbjct: 6 ENILGQPQVREFLRATVAQGKVSHAYLFTGPAGSNKTMAAYAFAQAVL-CPKGASGP-RG 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N C +++ D Y + G + V++IR I S+ + Sbjct: 64 GNCGACDA-CRRIMRKKHPDVRYFAPE---GAGGY----LVEQIRDIVADTSMAPIQAHK 115 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D VD + AANA LK+LEEPP V+ IL++ ++L TI SRC + F ++ Sbjct: 116 KVYILDRVDLLGVQAANAFLKTLEEPPSDVVLILLARTRESVLPTILSRCQVVPFRTIPA 175 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + + Q + R V+ A GS+ RA++ L + Sbjct: 176 SEAAGIIVQNTGASREQARMAVE-ACDGSITRAVEFLKSN 214 >gi|15612597|ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] Length = 564 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E I K L + HA LF G +G GK + A + + Sbjct: 8 RVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAI----N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP+ +PC+ K + S ++ D + + + N VDEIR IR Sbjct: 64 CEQAPI----AEPCNECRACKGITSGSIVDVMEIDAASNN---------GVDEIRDIRDH 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSEVRYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L ++++ I D V AA G + ++ +L Sbjct: 171 QRFDFKRISNDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLL 221 >gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] Length = 546 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F + + G + + L ++ HA LF G +G GK ++ +A + Sbjct: 8 RVFRSQSFEEVVGQKHVTTTLKNAIQKNKISHAYLFNGPRGTGKTSIAKIFAKAINCTVS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C K S D + + + N VDEIR IR + Sbjct: 68 TDGEPCNSC--DTCVSITKGTNS----DVIEIDAASNNG---------VDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V + A NALLK+LEEPP +FIL + + +TI SRC Sbjct: 113 YAPGESTYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 F ++S N++ + L + + + +D +F+ A G + A+ IL Sbjct: 173 FDFKAISVNDIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSIL 221 >gi|332141144|ref|YP_004426882.1| DNA polymerase III subunit delta [Alteromonas macleodii str. 'Deep ecotype'] gi|327551166|gb|AEA97884.1| DNA polymerase III subunit delta [Alteromonas macleodii str. 'Deep ecotype'] Length = 295 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 19/192 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y + ++HH LL G GIGK L + +L P C S ++Q +H Sbjct: 18 YLAKKLHHGLLLTGVSGIGKNQLALGLSNTLLCKHPSVDGPCEQCQ----SCHLRQAGNH 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 DF L + VD+IR LS TA G +V++I D M AA Sbjct: 74 P--DFHILES---------EKQLGVDKIREGIAKLSGTAQMGGNKVLLIPKADTMTEAAA 122 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 NALLK+LEEP +LI+ + ++ TI SRC + LS ++ ++L LK G + Sbjct: 123 NALLKTLEEPTNNTFLLLITDSVNKLMPTILSRC---ERQVLSLPSVSESLNYLKAKGVE 179 Query: 208 SKRDFVKIAAYG 219 D + +AAYG Sbjct: 180 DASDAL-LAAYG 190 >gi|163782796|ref|ZP_02177792.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881917|gb|EDP75425.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 456 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 23/202 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P + + + G E + L + R+ HA LF G +G+GK T+ R L N Sbjct: 7 RKYRPKFFREVVGQEVPVRILKNAVKNDRVSHAYLFAGPRGVGKTTIA-RILAKSLNCLN 65 Query: 62 PDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P +PC +++ D + + + N +D+IR +R Sbjct: 66 PK---------EGEPCGECENCQEIDRGNFPDLIEMDAASNR---------GIDDIRALR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +S T G ++V +ID + + A NALLK+LEEPP + +FIL + IL TI S Sbjct: 108 EAVSYTPIKGKFKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKILPTILS 167 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC I F +S++ + L+ + Sbjct: 168 RCQRIIFGRVSDDKVIDYLKDI 189 >gi|260898451|ref|ZP_05906947.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus Peru-466] gi|308089026|gb|EFO38721.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus Peru-466] Length = 320 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + ++G+ L + H L ++S C+ C Q+ Sbjct: 21 SDRIPGALLLQSDKGLAVEML-VEFFSHALLCQNYSSEACGFCHS--C-----QLTKSQS 72 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H L+ + P+ K R ITVD+IR ++ +R+ +I+P D MN +A+NA Sbjct: 73 HPDLHW---IRPE--KERNAITVDQIRACNRLAHESSQLNGYRLFVIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP +K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGEKCLFLLVTHNQERLLPTIRSRC 159 >gi|91228554|ref|ZP_01262474.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01] gi|91187878|gb|EAS74190.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01] Length = 320 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + EQG+G L + L +++ C+ S + Q +H Sbjct: 21 SDRIPGALLLQSEQGLGIEKL-IEFFSQALLCQNYASEACGFCH----SCQLNQSQNHP- 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD+IR ++ +R+ +I+P D MN +A+NA Sbjct: 75 -DLHWIKPE---KEGK---AITVDQIRACNRLAQESSQLNGYRLFVIEPADSMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGAKCLFLLVTHNQERLLPTIRSRC 159 >gi|254973666|ref|ZP_05270138.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-66c26] gi|255091057|ref|ZP_05320535.1| DNA polymerase III subunits gamma and tau [Clostridium difficile CIP 107932] gi|255312711|ref|ZP_05354294.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-76w55] gi|255515471|ref|ZP_05383147.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-97b34] gi|255648563|ref|ZP_05395465.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-37x79] gi|260681785|ref|YP_003213070.1| DNA polymerase III subunits gamma and tau [Clostridium difficile CD196] gi|260685382|ref|YP_003216515.1| DNA polymerase III subunits gamma and tau [Clostridium difficile R20291] gi|306518692|ref|ZP_07405039.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-32g58] gi|260207948|emb|CBA60069.1| DNA polymerase III subunit gamma/tau [Clostridium difficile CD196] gi|260211398|emb|CBE01472.1| DNA polymerase III subunit gamma/tau [Clostridium difficile R20291] Length = 545 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 26/284 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 RA+ P + + G + I K L S + HA LF G +G GK + F A + L Sbjct: 7 RAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNK 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ ++ L D ++ + +VD+IR +R Sbjct: 67 ----------INEEPCNEC--EICESVLKDNTMDVVEIDAASNN-----SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K E I D + + + G++ A+ IL C Sbjct: 170 QRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQ-CMSFGE 228 Query: 238 SYIDLIHIPR--QEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S ID + ++++ +++ ++ QD K + + L EF+L Sbjct: 229 SKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVL 272 >gi|329120112|ref|ZP_08248782.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis ATCC BAA-1200] gi|327463643|gb|EGF09961.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis ATCC BAA-1200] Length = 771 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 25/235 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 +NP + +PC P Q+ + D L + + N TG +D IR Sbjct: 65 ENP---------AHGEPCGRCPACTQIDAGRYVDLLEIDAASN--TG-------IDNIRE 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ Sbjct: 107 VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITV 166 Query: 178 RSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKIL 228 SRCL +++ LE L G ++ +++ AA GS+ A+ +L Sbjct: 167 LSRCLQFVLRNMTAQQAAAHLEHVLTAEGIPFEKTALQLLARAANGSMRDALSLL 221 >gi|260893960|ref|YP_003240057.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4] gi|260866101|gb|ACX53207.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4] Length = 427 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 RA+ P ++ G + + L GR+ HA LF G +G GK + A + LQ Sbjct: 9 RAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAYLFAGPRGTGKTSTARILAKALNCLQG 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P PC + ++ L + G +DE+R +R Sbjct: 69 P----------TPVPCDTCPQCLSIMEGTSLDVLEIDAASRRG-------IDEMRELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+ ++V +ID + AANALLK+LEEPP +V+FIL + I TI SRC Sbjct: 112 VRLSPVHSRYKVYIIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRC 171 Query: 182 LSIKF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +L E +L + E + + AA GS+ A+ +L Sbjct: 172 QRFDFRRLPTALIEEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLL 222 >gi|258626249|ref|ZP_05721096.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603] gi|258581301|gb|EEW06203.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603] Length = 688 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+ Q + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL 220 >gi|323705216|ref|ZP_08116792.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium xylanolyticum LX-11] gi|323535642|gb|EGB25417.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium xylanolyticum LX-11] Length = 530 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + L SGR+ HA LF G +G GK ++ +A V Sbjct: 7 RKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVNCPNS 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + +++L D + + + N +VD++R +R + Sbjct: 67 VDGEPCNKCQ------ICESANNNSLMDIIEIDAASNN---------SVDDVRELRDNII 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++ ++V +ID V ++ +A NALLK+LEEPPQ +FIL + I +TI SRC Sbjct: 112 YAPSSCKYKVYIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQR 171 Query: 184 IKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +S N+ K E +I + GS+ AI IL Sbjct: 172 FDFKRISSKVISQNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILE 221 >gi|218708914|ref|YP_002416535.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus LGP32] gi|218321933|emb|CAV17928.1| DNA polymerase III subunit tau [Vibrio splendidus LGP32] Length = 752 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITSTPCGECA------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+++ LEQ + + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSL 220 >gi|298368606|ref|ZP_06979924.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282609|gb|EFI24096.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 718 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 24 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 83 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 84 GHAEHGEPCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVLE 128 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 129 NAQYAPTAGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 188 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +++ ++L LE KI + + A GS+ A+ +L Sbjct: 189 CLQFVLRNMTTQQVADHLAHVLESEKIPYEATALQLIGRAGAGSMRDALSLL 240 >gi|77917989|ref|YP_355804.1| DNA polymerase III subunits gamma/tau [Pelobacter carbinolicus DSM 2380] gi|77544072|gb|ABA87634.1| DNA polymerase III, tau subunit [Pelobacter carbinolicus DSM 2380] Length = 582 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+HHA LF G +G+GK + +A + Sbjct: 5 VLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C +++++ D + + N TG VD+IR +R Sbjct: 65 EQGLSPQPCNVCQ------SCREISAGQGLDVFEIDGASN--TG-------VDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP+ FI + I TI SR Sbjct: 110 NIRYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSR 169 Query: 181 CLSIKFNSL 189 C F + Sbjct: 170 CQRFDFRKI 178 >gi|160936876|ref|ZP_02084240.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC BAA-613] gi|158440066|gb|EDP17813.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC BAA-613] Length = 560 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + + G + I + L S R+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P + + S + + + + + N V+ IR IR + Sbjct: 68 VDGSPCNEC------PTCRSIQSGSSMNVVEIDAASNNG---------VENIRDIREQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L +L +I D +V AA GS+ A+ +L Sbjct: 173 YDFKRISLETIANRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLL 221 >gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile 630] gi|255099173|ref|ZP_05328150.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-63q42] gi|255654098|ref|ZP_05399507.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-23m63] gi|296452477|ref|ZP_06894176.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP08] gi|296878245|ref|ZP_06902255.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP07] gi|115249019|emb|CAJ66830.1| DNA polymerase III subunits gamma and tau [Clostridium difficile] gi|296258683|gb|EFH05579.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP08] gi|296430753|gb|EFH16590.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP07] Length = 545 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 26/284 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 RA+ P + + G + I K L S + HA LF G +G GK + F A + L Sbjct: 7 RAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNK 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ ++ L D ++ + +VD+IR +R Sbjct: 67 ----------INEEPCNEC--EICESVLKDNTMDVVEIDAASNN-----SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K E I D + + + G++ A+ IL C Sbjct: 170 QRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQ-CMSFGE 228 Query: 238 SYIDLIHIPR--QEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S ID + ++++ +++ ++ QD K + + L EF+L Sbjct: 229 SKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVL 272 >gi|266620880|ref|ZP_06113815.1| ATPase [Clostridium hathewayi DSM 13479] gi|288867460|gb|EFC99758.1| ATPase [Clostridium hathewayi DSM 13479] Length = 329 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 120/239 (50%), Gaps = 19/239 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P +N + GHE I++ + + + HA + GE G+G+ +L +A +L K Sbjct: 2 PGFND-IIGHEMIKEHFKKAIETNHVSHAYILTGEAGMGRKSLANAFAMTLLCEKG-KKE 59 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTA 126 P C+ KQ+ S + D +++S+ P + I VD+IR +I + + Sbjct: 60 PCMQCHA------CKQVMSGSHPDLIFVSHE-KPNS------IGVDDIREQINDTIMIRP 106 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + Y+++ ++D + M A NALLK++EEPP + +L++ L TI SRC+ +K Sbjct: 107 YSSYYKIYIVDEAEKMTAQAQNALLKTIEEPPSYAIIMLLTTNQEAFLPTILSRCVQLKL 166 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 L ++ + L + + + + K + A G++ +AI + + +++ Y +L+H+ Sbjct: 167 KPLQDSVVKTYLMESQGIS-EVKAEIYAAFARGNLGKAIHLASSEDFQLM--YTELLHM 222 >gi|262171934|ref|ZP_06039612.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451] gi|261893010|gb|EEY38996.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451] Length = 697 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+ Q + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL 220 >gi|224541626|ref|ZP_03682165.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM 15897] gi|224525464|gb|EEF94569.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM 15897] Length = 600 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I L ++ HA LF G +G GK T+ A Sbjct: 10 RTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLA-------- 61 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KA NP PC KQ+ + D + + + N + R++I +++Y Sbjct: 62 --KAVNCTGNPKPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLID-----KVKY- 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V +ID V M+ A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 114 ---APTQGQYKVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQ-LKIMGW---DSKRDFVKIAAYGSVARAIKILH 229 F L++ + + ++ LK G D + + A G + A+ IL Sbjct: 171 QRFDFTRLTDQEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILE 222 >gi|46908883|ref|YP_015272.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b F2365] gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes Clip81459] gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes serotype 4b str. F2365] gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 579 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + + AL+ +A LL++ AFD Sbjct: 229 SEEVTV---DDALEITGSVAQNLLTKLVSAAFD 258 >gi|92113731|ref|YP_573659.1| DNA polymerase III, delta prime subunit [Chromohalobacter salexigens DSM 3043] gi|91796821|gb|ABE58960.1| DNA polymerase III, delta prime subunit [Chromohalobacter salexigens DSM 3043] Length = 323 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D+ L + + R+ HALL G G+GK H L + ++ +C+ + Sbjct: 9 DLWTRLVRQQDAQRLPHALLISGPHGVGK---------HDLADALIART---LCHAPGET 56 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 + A H L Y L+ + R I +D IR++ F+S TA G RVI + P Sbjct: 57 ACGECHACHMLASG-YHPDLLDISPAEKRRQIRIDPIRQVNAFVSQTAQQGGHRVIRLHP 115 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + MN A+NALLKSLEEP ++ LF+L++ +L TIRSRC Sbjct: 116 AEAMNVAASNALLKSLEEPGERTLFVLLADIPSRMLPTIRSRC 158 >gi|209519558|ref|ZP_03268351.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160] gi|209500037|gb|EEA00100.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160] Length = 375 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPPQ V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPQHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVTHLE--RILG 192 >gi|262402603|ref|ZP_06079164.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586] gi|262351385|gb|EEZ00518.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586] Length = 695 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFNEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+ + L+++ KI + + + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSL 220 >gi|138893695|ref|YP_001124148.1| DNA polymerase III subunits gamma and tau [Geobacillus thermodenitrificans NG80-2] gi|134265208|gb|ABO65403.1| DnaZX [Geobacillus thermodenitrificans NG80-2] Length = 559 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ P + + + D L + + N + VDEIR IR Sbjct: 64 CEHAPA----AEPCNECPVCLGITNGTVPDVLEIDAASNNR---------VDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSL 189 F + Sbjct: 171 QRFDFRRI 178 >gi|150392457|ref|YP_001322506.1| DNA polymerase III subunits gamma and tau [Alkaliphilus metalliredigens QYMF] gi|149952319|gb|ABR50847.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus metalliredigens QYMF] Length = 559 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L + + HA LF G +G GK + +A V + Sbjct: 8 RKWRPRIFEDVIGQDHVIKTLKNQIEANNVAHAYLFSGTRGTGKTSTAKIFARAVNCKDE 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + + ++ D + + + N VD IR IR + Sbjct: 68 QNVNPCNEC--EVCQGII----TESIMDVIEIDAASNN---------GVDHIREIRENVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 YPPSKGKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPQKLPATILSRCQR 172 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + +++ K L + + I + V + A G++ A+ IL Sbjct: 173 FDFKPVKTDDMMKQLVYICKSMDINAEEEALRVVAMNAEGALRDALSIL 221 >gi|121587397|ref|ZP_01677167.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 2740-80] gi|121548400|gb|EAX58462.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 2740-80] Length = 336 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|54308394|ref|YP_129414.1| DNA polymerase III subunit delta' [Photobacterium profundum SS9] gi|46912822|emb|CAG19612.1| hypothetical DNA polymerase III, delta prime subunit [Photobacterium profundum SS9] Length = 304 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 17/170 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHALH 90 MHHA+L +G G+ LG + A VL N C+ +PC K A+ Sbjct: 1 MHHAILLLAPKGTGREVLGQQLAQTVLCNN---------CDSEPCGVCHSCKLFAAGTHP 51 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DF + K I VD +R+ + T++ RVIMID D M ANA+ Sbjct: 52 DFHLIQPEQEGKQ------IGVDAVRQCNRWAMETSHLAGQRVIMIDCADSMGEAGANAI 105 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LK+LEEPP FIL + + ++L TI SRC + + E + + +E+ Sbjct: 106 LKTLEEPPSGCQFILTAQSLDSLLPTIVSRCNKWRIETPDEQFVKQWVEK 155 >gi|228471225|ref|ZP_04056038.1| putative DNA polymerase III, delta prime subunit [Porphyromonas uenonis 60-3] gi|228307040|gb|EEK16122.1| putative DNA polymerase III, delta prime subunit [Porphyromonas uenonis 60-3] Length = 362 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 45/221 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 ++G++ +++ + SG+M HA+L E ++G L + +A ++ Q+P Sbjct: 6 IYGYQALKQQFAHLTHSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSP---------T 56 Query: 73 NPDPCSPFV--KQMASHALHDFLYL------SYSLNPKT---GKWRT------------- 108 + D C K++A+ A D +++ + P +WRT Sbjct: 57 DEDSCGACASCKKVAAIAHPDVIFVYPVVKAAQDETPTERYFDEWRTFLERSPYITDQDW 116 Query: 109 -----------VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 VI V+EI + LS+T G WR I+I + MN AAN LLKSLEEP Sbjct: 117 LEVLEAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEP 176 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 P + LFIL+S S +L TI SR + ++E + +AL Sbjct: 177 PAETLFILVSAHSDRLLDTILSRVQRFELPPMTEAEMREAL 217 >gi|331083246|ref|ZP_08332359.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404327|gb|EGG83872.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium 6_1_63FAA] Length = 538 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIA-----KILARAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV + PC+ A + + G VD IR IR ++ Sbjct: 63 NCEHPV---DGSPCNTCKTCRAINEGTSMNVIEIDAASNNG-------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TG ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + L++L G D + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|260439409|ref|ZP_05793225.1| ATPase [Butyrivibrio crossotus DSM 2876] gi|292808205|gb|EFF67410.1| ATPase [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 22/221 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ GHE+I L +++HA +F G G GK L +A +L Sbjct: 6 KIIGHENIISQLISAVSMSKINHAYIFNGPDGSGKNMLAKAFAQALL---------CEKQ 56 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTG 129 P+ C F KQ S + D +Y+ +S +I+VD+IR + + + G Sbjct: 57 GPEGCGECHFCKQTESGSNPDLIYIRHS-------KENIISVDDIRESLVQDIQIKPYNG 109 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID + + A NALLK++EEPP+ + I +++ + L TI SRC+ L Sbjct: 110 LYKVYIIDEAEKLTVQAQNALLKTIEEPPEYSVIIFLTNNADIFLQTILSRCIVFNLKPL 169 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ + L + KI +++K A G + +AI++ Sbjct: 170 RDDVITDYLIKTYKIADYEAK--VCSSFAQGILGKAIRLFE 208 >gi|124267720|ref|YP_001021724.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124260495|gb|ABM95489.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 614 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 17/224 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + + G E + + L+ S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRHFGEMVGQEHVVQALANALTSQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD PC P + + + D+ L + N VDEI + Sbjct: 65 TGPDGQGG----ITAQPCGVCPACRDIDAGRFVDYTELDAASN---------RGVDEISQ 111 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + + G ++V MID V ++ A NA+LK+LEEPP+ + F+L + + T+ Sbjct: 112 LLEQSAYKPVVGRFKVFMIDEVHMLSSTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 Query: 178 RSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGS 220 SRCL ++ + LEQ L G ++ +++ A G+ Sbjct: 172 LSRCLQFNLRPMAPETVLAHLEQVLAAEGISAEPGALRLLARGA 215 >gi|86148367|ref|ZP_01066660.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222] gi|85833850|gb|EAQ52015.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222] Length = 758 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITSTPCGECA------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+++ LEQ + + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSL 220 >gi|312129467|ref|YP_003996807.1| DNA polymerase iii, subunits gamma and tau [Leadbetterella byssophila DSM 17132] gi|311906013|gb|ADQ16454.1| DNA polymerase III, subunits gamma and tau [Leadbetterella byssophila DSM 17132] Length = 553 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 20/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + PV + G I L SG++ A LF G +G+GK T A + QN Sbjct: 9 RKYRPVTFDSVVGQSHITTTLKNAISSGQLAQAFLFTGPRGVGKTTCARILAKTINCQNV 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C C F Q AS +H+ S + +V++IR + + Sbjct: 69 SADTEPCNECTS--CKNFA-QNASFNIHELDAASNN------------SVEDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RFPPQDGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQLKI---MGWDSKR-DFVKIAAYGSVARAIKI 227 FN + ++ L + I +G++ + + + + A G + A+ + Sbjct: 174 IFDFNRIQIKDMADHLANIAIKENIGFEPEALELIALKADGGLRDALSM 222 >gi|260772460|ref|ZP_05881376.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP 69.14] gi|260611599|gb|EEX36802.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP 69.14] Length = 672 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPNTFKAVVGQAHVLTALENALTQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + LE Q + + DSK + AA GS+ A+ + Sbjct: 173 FHLKPISVENIRQQLEHVLQAENVNSDSKSLAMIAHAADGSMRDALSL 220 >gi|255304953|ref|ZP_05349127.1| DNA polymerase III subunits gamma and tau [Clostridium difficile ATCC 43255] Length = 545 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 26/284 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 RA+ P + + G + I K L S + HA LF G +G GK + F A + L Sbjct: 7 RAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNK 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ ++ L D ++ + +VD+IR +R Sbjct: 67 ----------INEEPCNEC--EICESVLKDNTMDVVEIDAASNN-----SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K E I D + + + G++ A+ IL C Sbjct: 170 QRYDFKRVTVKDITLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQ-CMSFGE 228 Query: 238 SYIDLIHIPR--QEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S ID + ++++ +++ ++ QD K + + L EF+L Sbjct: 229 SKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVL 272 >gi|262165292|ref|ZP_06033029.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223] gi|262025008|gb|EEY43676.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223] Length = 692 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+ Q + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL 220 >gi|223558002|gb|ACM91008.1| DNA polymerase III subunit gamma/tau [uncultured bacterium URE4] Length = 577 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + L G ++I + LS G++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFAKMINCAHP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C + C F ++ S+ +H+ S + VD+I+ + + Sbjct: 69 GPDMEPCGEC--ESCVSF-QEGRSYCIHELDAASNN------------GVDDIKALIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G + V +ID V ++++A NA LK+LEEPP +F+L + IL TI SRC Sbjct: 114 QVPPQVGKYSVYIIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKAL 198 + FN + ++ + L Sbjct: 174 TYDFNRIGIPDMVRNL 189 >gi|91223616|ref|ZP_01258881.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus 12G01] gi|91191702|gb|EAS77966.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus 12G01] Length = 701 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGKC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE----------QLKIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L+ + K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QADIVSHMLGTIDTDQAI-HLLESISSKKPQQAMDKIQQLA------ANGVEWDGLLQQV 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L++A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDQAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|68171140|ref|ZP_00544549.1| ATPase [Ehrlichia chaffeensis str. Sapulpa] gi|88658108|ref|YP_507601.1| hypothetical protein ECH_0803 [Ehrlichia chaffeensis str. Arkansas] gi|67999465|gb|EAM86105.1| ATPase [Ehrlichia chaffeensis str. Sapulpa] gi|88599565|gb|ABD45034.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 295 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 29/153 (18%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGKATL +R+A ++ Q+ + NPD + Sbjct: 24 LIYGNRGIGKATLAYRFAKYLTQSTYLNH-----YNPDLLT------------------- 59 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 +I +D+IR I+ FL L+ +R++++D +D + NA NA+LK LEE Sbjct: 60 -----INDNEEIIGIDKIRNIKNFLYLSTARLKYRIVIVDSIDSLTINATNAMLKILEET 114 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P + ILISH + + +RSRC ++ + L+ Sbjct: 115 PNNSIIILISHNLHEVPTVVRSRCFTLGLSDLN 147 >gi|254230305|ref|ZP_04923693.1| ATPase involved in DNA replication [Vibrio sp. Ex25] gi|262393775|ref|YP_003285629.1| DNA polymerase III delta prime subunit [Vibrio sp. Ex25] gi|151937165|gb|EDN56035.1| ATPase involved in DNA replication [Vibrio sp. Ex25] gi|262337369|gb|ACY51164.1| DNA polymerase III delta prime subunit [Vibrio sp. Ex25] Length = 320 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + EQG+G L + L +++ C+ + SH Sbjct: 21 SDRIPGALLLQSEQGLGIEKL-IEFFSQALLCQNYASEACGFCHS------CQLNQSHNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD++R ++ +R+ +I+P D MN +A+NA Sbjct: 74 PDLHWIKPE---KEGK---AITVDQVRACNRLAQESSQLNGYRLFVIEPADSMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGAKCLFLLVTHNQERLLPTIRSRC 159 >gi|260589048|ref|ZP_05854961.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM 20583] gi|260540827|gb|EEX21396.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM 20583] Length = 538 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E I L + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIA-----KILARAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV + PC+ A + + G VD IR IR ++ Sbjct: 63 NCEHPV---DGSPCNTCKTCRAINEGTSMNVIEIDAASNNG-------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TG ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + L++L G D + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFRRITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus flavithermus WK1] gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1] Length = 559 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 19/221 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E + K L ++ HA LF G +G GK ++ +A V Sbjct: 8 RVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVNCEHR 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C P + + ++ D L + + N VDEIR IR + Sbjct: 68 PTAEPCNEC------PTCLGIMNGSISDVLEIDAASNN---------GVDEIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 FAPTSAPYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 F + L + +LK + + D V+ A ++ARA Sbjct: 173 FDFRRI---ELKSIVSRLKTVVTEEGID-VEEEALFAIARA 209 >gi|303239743|ref|ZP_07326267.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] gi|302592680|gb|EFL62404.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] Length = 555 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + E + K L GR+ HA LF G +G GK T+ ++ + N + Sbjct: 8 RKWRPMVFEDVVEQEHVVKTLKNSISVGRIAHAYLFCGTRGTGKTTMAKIFSRAI--NCE 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S N DPC+ K + + +L D + + + N +VD +R IR Sbjct: 66 NS------TNGDPCNECEICKGILNGSLLDVIEIDAASNN---------SVDNVREIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VVYAPSKARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + ++ K +E + Sbjct: 171 QRFDFRRIPVESIVKRIEHI 190 >gi|224373508|ref|YP_002607880.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola AmH] gi|223589298|gb|ACM93034.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola AmH] Length = 493 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 46/350 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G + I K L R+ HA LF G +G GK T +A + + + Sbjct: 7 YRPKRFEEIIGQDAIVKTLVNSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQCDHGPT 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P C + C MA+ + H D + + + N K +++IR + Sbjct: 67 SNPCEEC--ENCI-----MANESRHIDIIEMDAASNRK---------IEDIRELIEHTKY 110 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + G +++ +ID V + A NALLK+LEEPP+ V FI+ + + +TI SR Sbjct: 111 KPSVGKYKIFIIDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHF 170 Query: 185 KFNSLS----ENNLYK--ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDK 234 +FN + EN L K A+E ++ ++ R +K AA GSV ++ +L + K Sbjct: 171 RFNKIKNGIIENYLIKILAIENVE-FDEEALRLIIK-AAKGSVRDSLTLLDQAIAFSKGK 228 Query: 235 I-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQK-------IAFDFLIEFILKEICKSA 286 I + S +D++ + E + +I D + + D+K D+ IE I+ E+ Sbjct: 229 IDLDSVVDMLGVINPEI----INEIFDAVKNSDKKRIKEIVGEIKDYDIESIIDEVIIYL 284 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR---QMIFHLLSKA 333 K A G L Q +F++V V YN D ++F +S+A Sbjct: 285 KDALFEGSLPLI--TVQRFFNIVADVKELIKYNTDNEFVLTLMFLRMSEA 332 >gi|313893347|ref|ZP_07826921.1| hypothetical protein HMPREF9199_0576 [Veillonella sp. oral taxon 158 str. F0412] gi|313442116|gb|EFR60534.1| hypothetical protein HMPREF9199_0576 [Veillonella sp. oral taxon 158 str. F0412] Length = 346 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 23/210 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + A +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFYGEAGLGKLDMAIGLASLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N + K++ + L ++ ++ + P +T + V++ Sbjct: 62 GTAYLEAVKEARLANGETE----KRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N ANA+LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 TI SRC+ + FNS+ + + KAL I G Sbjct: 172 TIISRCMGVGFNSVDVDTIRKALVARGITG 201 >gi|258621806|ref|ZP_05716837.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573] gi|258586037|gb|EEW10755.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573] Length = 697 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+ Q + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL 220 >gi|269962032|ref|ZP_06176386.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833116|gb|EEZ87221.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 320 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 22/190 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + ++G+ L ++ H L +++ C+ + SH+ Sbjct: 21 SERIPGALLLQSDKGLAVEKLVELFS-HSLLCQNYTSEACGFCHS------CQLTQSHSH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD+IR ++ +RV +I+P D MN +A+NA Sbjct: 74 PDLHWIKPE---KEGK---SITVDQIRACNRLAHESSQLNGYRVFIIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK+LEEP QK LF+L++H +L TI+SRC S + M W S+ Sbjct: 128 LLKTLEEPGQKCLFLLVTHNQERLLPTIQSRCQQWVVTPPSTE---------QAMNWMSE 178 Query: 210 RDFVKIAAYG 219 + ++ AY Sbjct: 179 QGASQVPAYA 188 >gi|328909980|gb|AEB61576.1| DNA polymerase III (gamma and tau subunits) [Bacillus amyloliquefaciens LL3] Length = 546 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 49/334 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I K L + HA LF G +G GK + +A V + APV Sbjct: 1 MVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV----NCEHAPVE--- 53 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ K + + ++ D + + + N VDEIR IR + + + Sbjct: 54 -EPCNECAACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDKVKFAPSAVTY 103 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC F ++ Sbjct: 104 KVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITS 163 Query: 192 NNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCDK------- 234 + + EQLK+ + D + AA G + A+ +L + D+ Sbjct: 164 QAIVGRMKIIVDAEQLKV--EEGALDIIASAADGGMRDALSLLDQAVSFSGDELAVDDAL 221 Query: 235 IISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIE---FILKEICKSA 286 +I+ + +I + AL + Q + +ELL Q + A LIE F +++ Sbjct: 222 LITGAVSQHYIGKLASALHRKQVSEALETLNELLQQGKDAA--KLIEDMIFYFRDMLLYQ 279 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 A L G LE+ ++ +++ L + A ++Y + Sbjct: 280 AAPDLEGVLEKV-KVDEMFRDLSGEIPAPALYEM 312 >gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT 12057] gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT 12057] Length = 609 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 16/179 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + NP Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 69 TADGEACNQC--ESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172 >gi|168333587|ref|ZP_02691852.1| DNA polymerase III, subunits gamma and tau [Epulopiscium sp. 'N.t. morphotype B'] Length = 522 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 23/242 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I K L R+ HA LF G +G GK T +A + Sbjct: 7 RKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAYLFTGSRGTGKTTAAKIFARAINCKNS 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K++A A + + L + + VD+IR+I + Sbjct: 67 VDGKPCEKC------VVCKEIAEGAFVNIIELDAASHNG---------VDDIRQINEEVL 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T G ++V +ID V ++ A NA+LK+LEEPP V+FIL + I +T+ SRC Sbjct: 112 YTPAVGVYKVYIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQR 171 Query: 184 IKFNSLSENNLYKA-LEQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSY 239 F +S +++ L+ ++ + +++ V++ A G + A+ IL ++ IS Y Sbjct: 172 FDFRRISTSDICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSIL----EQCISFY 227 Query: 240 ID 241 ID Sbjct: 228 ID 229 >gi|313886672|ref|ZP_07820382.1| putative DNA polymerase III, delta' subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923834|gb|EFR34633.1| putative DNA polymerase III, delta' subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 362 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 ++G+ +++ SG+M HA+L E ++G L + +A ++ Q+P Sbjct: 6 IYGYRALKQQFVHLTRSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSP---------T 56 Query: 73 NPDPCSPFV--KQMASHALHDFLYL------SYSLNPKT---GKWRT------------- 108 + D C K++A+ A D +++ + P +WRT Sbjct: 57 DEDSCGECASCKKVAASAHPDVIFVYPVIKAAQDETPTERYFDEWRTLLERSPYITEQDW 116 Query: 109 -----------VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 VI V+EI + LS+T G WR I+I + MN AAN LLKSLEEP Sbjct: 117 LEVLEAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEP 176 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 P + LFIL+S S +L TI SR + ++E + +AL L Sbjct: 177 PAETLFILVSAHSDRLLDTILSRVQRFELPPMTEEEMREALTAL 220 >gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM 14484] gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM 14484] Length = 469 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 25/194 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G E ++ + G++HHA LF G +G GK TL +L Sbjct: 7 RKYRPKKFSQVVGQETAKRVILNAVRLGKLHHAYLFSGPRGTGKTTLA-----RILTRA- 60 Query: 64 FSKAPVRMCNP---DPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V NP +PC +A + D + + + N +D+IR + Sbjct: 61 -----VNCLNPQEGEPCGECENCVAIDKGSFPDLVEMDAASNR---------GIDDIRNL 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + +S T G ++V ++D + + A NALLK+LEEPP + +F+L + I TI Sbjct: 107 KDAVSYTPLKGKYKVYILDEAHMLTKEAFNALLKTLEEPPPRTIFVLCTTEYEKIPPTIL 166 Query: 179 SRCLSIKFNSLSEN 192 SRC I F+ L E+ Sbjct: 167 SRCQRIVFSKLEED 180 >gi|269966017|ref|ZP_06180109.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus 40B] gi|269829413|gb|EEZ83655.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus 40B] Length = 495 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 157/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGKC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE----------QLKIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L+ + K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QADIVSHMLGTIDTDQAI-HLLESISSKKPQQAMDKIQQLAAN------GVEWDGLLQQV 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] Length = 543 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I++ L S + HA + G +G GK ++G +A + N + Sbjct: 7 RKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAYMLTGPRGTGKTSIGKLFAKAI--NCE 64 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + N +PC+ KQ+ +++ D L + + N V++IR IR Sbjct: 65 ------HLVNGEPCNDCNQCKQIMNNSHPDILEIDAASNN---------GVEQIRDIREQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 VTYAPSVGKYKVYIIDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRC 169 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + + +L + + E+L+I + + + A G + A+ +L Sbjct: 170 QRFDFRRIGQKDLIERMKFVASNEELQI--EEEALQLISMLAQGGMRDALSLL 220 >gi|323144867|ref|ZP_08079436.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei YIT 12066] gi|322415392|gb|EFY06157.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei YIT 12066] Length = 372 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + R+HHA L G +GIGK T+ A + Sbjct: 13 RKYRPQTFADVVGQDHVLSALCNTIDAKRIHHAYLLTGTRGIGKTTIARIIAKSLECETG 72 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C K +A+ D + + + K VD+ R++ Sbjct: 73 ITSKPCLQC--DAC----KAIAAGNYPDVIEIDAASQTK---------VDDTRQLLENTQ 117 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TG +++ +ID V + N+ NALLK+LEEPP V FIL + I +T+ SRCL Sbjct: 118 YPPLTGRYKIYIIDEVHMLTNNSFNALLKTLEEPPSYVKFILATTDPHKIPTTVLSRCLQ 177 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + +LS +N + L + + AA GS+ A+ + CD+ I+ Sbjct: 178 FQLKALSVDEIKNRIISILATEGVPCEIEAAQLIARAAKGSMRDALSL----CDQAIA 231 >gi|291562955|emb|CBL41771.1| DNA polymerase III, subunits gamma and tau [butyrate-producing bacterium SS3/4] Length = 572 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 19/217 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + I K L SGR+ HA LF G +G GK T+ A V +P C Sbjct: 20 GQDHIVKTLQNQIGSGRIGHAYLFCGTRGTGKTTVAKILARAVNCEHPVDGSPCGEC--- 76 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 P KQ+ + + + + + N V+ IR IR + G +RV + Sbjct: 77 ---PSCKQILAGTSLNVVEIDAASNNG---------VENIREIREQVQYPPTEGKYRVYI 124 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC F ++ + + Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQRYDFRRITLDTIT 184 Query: 196 KALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 L++L + D +V A GS+ A+ +L Sbjct: 185 ARLKELTEAENMPVEDKALRYVAKAGDGSMRDALSLL 221 >gi|113970589|ref|YP_734382.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-4] gi|113885273|gb|ABI39325.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-4] Length = 1071 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHI 190 >gi|312142719|ref|YP_003994165.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp. 'sapolanicus'] gi|311903370|gb|ADQ13811.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp. 'sapolanicus'] Length = 602 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G + + + L + R+ HA LF G +G GK + +A + +P Sbjct: 8 RKYRPEDFTDLIGQDHVVQTLKNALKNDRVAHAYLFAGPRGTGKTSTAKVFAKALNCADP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P CN C ++++S + D + + + N +DEIR +R + Sbjct: 68 AADLEPCGECNS--C----QRISSGSSLDVIEIDAASNR---------GIDEIRELREKV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V + A NALLK+LEEPP V+FIL + +++TI SRC Sbjct: 113 KFYPGEGQYKVYIIDEVHMLTTGAFNALLKTLEEPPDSVVFILATTEPHKVITTIMSRCQ 172 Query: 183 SIKFNSLS 190 F LS Sbjct: 173 RFDFTLLS 180 >gi|256828009|ref|YP_003156737.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium baculatum DSM 4028] gi|256577185|gb|ACU88321.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium baculatum DSM 4028] Length = 614 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 21/218 (9%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNP 74 G + +++ LS+ +GR+ A LF G +G+GK TL +A + QN S+ P C Sbjct: 20 GQDAVKRILSRAASTGRVAPAYLFSGTRGVGKTTLARIFAKALNCQNGPASE-PCNQC-- 76 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 P +Q+ + D + + + N TG VD +RR++ + ++VI Sbjct: 77 ----PICRQITLGSAVDVVEIDGASN--TG-------VDNVRRLKEDVGYAPLECRYKVI 123 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID +++ A NALLK+LEEPP V FI+ + TI SRC F L + L Sbjct: 124 IIDEAHMLSKQAFNALLKTLEEPPGHVTFIMATTEPEKFPQTIISRCQHFVFKRLPQAEL 183 Query: 195 YKALEQ-LKIMGWDSKRDFVKIAA---YGSVARAIKIL 228 + L+ LK + ++ V + A GSV + +L Sbjct: 184 VRHLDGVLKRESFPAEPSAVTLVARRGAGSVRDGMSLL 221 >gi|262038579|ref|ZP_06011948.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] gi|261747448|gb|EEY34918.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] Length = 501 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 41/286 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E + + + ++ HA LF G +G+GK T+ A V N Sbjct: 12 RKYRPQNFDEIAGQEFVTRAIKNSLREDKLSHAYLFTGPRGVGKTTIARLIAKGVNCLNN 71 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C D C +++A D + + + N +DEIR ++ + Sbjct: 72 GITDNPCGVC--DNC----REIAQGISMDMIEIDAASNR---------GIDEIRELKEKI 116 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++ +ID V + + A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 117 NYQPVKGRRKIYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEIDKIPDTVISRCQ 176 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGS------------------ 220 F + E ++ K L E+ I D D + + GS Sbjct: 177 RYDFLPIDEKDITKLLKEVAEKENITIDDESLDLIYRKSEGSARDSFSIFEQVISNFNGE 236 Query: 221 ---VARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELL 263 +++ K L D +++ +++LI +E L M +I +E L Sbjct: 237 DIDISKTQKALGVVPDIVLNQFLELIQKGNKEELLDFMDKIWEEGL 282 >gi|196251181|ref|ZP_03149856.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. G11MC16] gi|196209307|gb|EDY04091.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. G11MC16] Length = 559 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L ++ HA LF G +G GK + +A V + Sbjct: 8 RVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ P + + + D L + + N + VDEIR IR Sbjct: 64 CEHAPA----AEPCNECPVCLGITNGMVPDVLEIDAASNNR---------VDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSL 189 F + Sbjct: 171 QRFDFRRI 178 >gi|237653167|ref|YP_002889481.1| DNA polymerase III subunit delta' [Thauera sp. MZ1T] gi|237624414|gb|ACR01104.1| DNA polymerase III, delta prime subunit [Thauera sp. MZ1T] Length = 347 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 14/166 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA--L 89 R+ HALLF G G+GK L A D A C C P + +++ + L Sbjct: 19 RLPHALLFVGPAGLGKRALAEALA--ARLLCDAPGADGHACGQ--CEPCLWRLSGNHPDL 74 Query: 90 HDFLYLSYSL-------NPKTGKW-RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 H + + + GK T I +D++R ++ L++T + G RV+++DP + Sbjct: 75 HRVVPEAETAAAEGEGDGEAPGKAASTQIRIDQVRALQGALAVTGHHGSRRVVLLDPAEA 134 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 MN ANALLK LEEPP+ +F+L+S A +L TIRSRC F+ Sbjct: 135 MNGVTANALLKLLEEPPEGCIFVLVSSAPRILLPTIRSRCQQWHFS 180 >gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC 533] gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC 533] Length = 602 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 37/282 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDGV-----VGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ ++D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCD 233 F + +++L L Q KI + + + A G + ++ +IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDFL 274 K+ Y D + I YA Q K++Q+ LL+ A + + Sbjct: 231 KV--KYEDALRITG--YAAQEKIEQVLLNLLNGKTSAALEIV 268 >gi|84394297|ref|ZP_00993021.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01] gi|84375065|gb|EAP91988.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01] Length = 632 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+++ LEQ + + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIHEQLDHILEQENVTSESRALGMIAHAADGSMRDALSL 220 >gi|253581070|ref|ZP_04858330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847606|gb|EES75576.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 329 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 18/213 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I L SG++ H+ +F GE G GK L +A LQ P + C Sbjct: 7 IIGHEEIIGHLKNAIESGKISHSYIFTGEPGSGKKLLAGTFAS-TLQCEAGGTEPCQKC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D C K+ D + +S+ P T IT+DEIR ++ + + ++ Sbjct: 65 -DSC----KKAMGKNHPDIIMVSHE-KPGT------ITIDEIRDQVINDIDIRPYYSPYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I D M A NALLK++EEPP+ + +L+++ +L TI+SRC+ + + + Sbjct: 113 IYIIADADLMTPQAQNALLKTIEEPPEYAVILLLTNNIGGLLPTIQSRCVRLDLKVVDDG 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARA 224 + K L E L + + ++ D A GS+ RA Sbjct: 173 LVKKYLMEHLHVPDYQAEIDAS--FAQGSIGRA 203 >gi|114047820|ref|YP_738370.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-7] gi|113889262|gb|ABI43313.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-7] Length = 1045 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHI 190 >gi|323340130|ref|ZP_08080394.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis ATCC 25644] gi|323092321|gb|EFZ34929.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis ATCC 25644] Length = 577 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G + I K L + + HA LF G +G GK + +A L P+ Sbjct: 8 RVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFA-KALNCPN 66 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N DPC+ K + + L+D + + + N V+EIR IR Sbjct: 67 -------QVNGDPCNECETCKAITAGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTQADYKVYIIDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + +E + K +D + + + AA G + A+ IL D+++S Sbjct: 171 QRFDFKRITSGAILERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSIL----DQVLS 226 >gi|254456519|ref|ZP_05069948.1| probable DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] gi|207083521|gb|EDZ60947.1| probable DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] Length = 309 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 26/225 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----QN 61 +P RLF H+ + L Y ++ + +LF GE+GIGK TL + ++L +N Sbjct: 3 LEPANQIRLFSHKKKFESLINLYSKNKLPNKILFSGEKGIGKCTLAYHMVNYILSLSEEN 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + +++ + + V+ +S +F+ + S + K I +D+IR + Sbjct: 63 P-YDTKNLQINSENKSFKLVQNKSSP---NFILIDVSADKKN------IDIDQIRNLILS 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ ++ R+++ID ++ +N N+ NALLK LEEP + ++ + + IL T++SRC Sbjct: 113 LNKSSFNDKPRIVLIDNIELLNLNSVNALLKILEEPNDNIN-FILINNNKKILPTLKSRC 171 Query: 182 LSIK-----------FNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 L+ K N + +NN+Y L I +++ R + + Sbjct: 172 LNFKIQLNFEQSIDTINKILDNNIYDLLNINLINYYNTPRQLLNL 216 >gi|218132674|ref|ZP_03461478.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC 43243] gi|217992400|gb|EEC58403.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC 43243] Length = 540 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKWRPADFDDVKGQDAIVTTLRNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K +A+ + + + + + N V++IR+IR + Sbjct: 68 VDGRPCGEC------AMCKSIAAGSSMNVIEIDAASNNG---------VEDIRKIREEVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YSPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTETHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + LE+L I D ++ AA GS+ A+ +L Sbjct: 173 YDFKRISIETITARLEELMKAENINVEDKALRYIAKAADGSLRDALSLL 221 >gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus NCFM] gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus ATCC 4796] gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus NCFM] gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus ATCC 4796] Length = 596 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 34/252 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----IGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A++ ++ D + + + N VDEIR IR Sbjct: 63 ---NCTNLQDGEPCNECANCIAANEGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 F +S EN + L+Q I + + A G + A+ I L Y+ D Sbjct: 171 QRYNFKRISKEDLENRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSYEKD 230 Query: 234 KIISSYIDLIHI 245 + +Y D + I Sbjct: 231 SV--NYEDALQI 240 >gi|323499527|ref|ZP_08104497.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM 21326] gi|323315400|gb|EGA68441.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM 21326] Length = 710 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 85/334 (25%), Positives = 144/334 (43%), Gaps = 48/334 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFNEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGQC--DTC----KEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 ++ + +++ L+ I+G + A S RA+ ++ + D S D + Sbjct: 173 FHLKPITVDTIHEQLDH--ILGHE---------AVTSEPRALGMIAHAAD---GSMRDAL 218 Query: 244 HIPRQEYALQKMQQIADEL------LSQDQKIAFDFLIEFILKEICKSA--KAAALSGQL 295 + Q AL +A+ + L DQ + L+E I + + A +AL+ Sbjct: 219 SLTDQAIALGNGSVMAESVAHMLGTLDTDQAL---HLLESISSKQPEQAMETLSALAQNG 275 Query: 296 EEADQIAQIYFSLVKRVHAFSMY-----NLDRRQ 324 E D + Q L ++H +MY LD+ Q Sbjct: 276 VEWDGLLQ---QLATQLHRMAMYQALPSTLDKSQ 306 >gi|291546690|emb|CBL19798.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. SR1/5] Length = 540 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L+ + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDNFDDVKGQDHIVTTLTNQIKANRIGHAYLFCGTRGTGKTTVA-----KILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV N PC+ A A + G VD IR IR ++ Sbjct: 63 NCEHPV---NGSPCNECAMCKAIQAGTAMNVIEIDAASNNG-------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISSY 239 F+ +S + + L E L G +++ V+ A GS+ A+ +L D+ IS Y Sbjct: 173 YDFHRISIDTIAARLSELLTAEGVEAEEKAVRYVAKKGDGSMRDALSLL----DQCISFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|288574784|ref|ZP_06393141.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570525|gb|EFC92082.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio peptidovorans DSM 11002] Length = 554 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 18/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + + G + HA LF G +G GK T+ +A + D Sbjct: 7 RRYRPQTFQDVTGQNTAVEVVRRAVSRGNVGHAYLFSGPRGCGKTTVARLFA-KAVNCSD 65 Query: 64 FSKA--PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P +C D C + ++ D + + + N + VDEIR ++ Sbjct: 66 RGKGGEPCNVC--DSC----RSISEGNSLDVVEIDGASNNR---------VDEIRDLKTH 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L + + ++V ++D V ++ A NALLK+LEEPP+ VLFIL + + TIRSRC Sbjct: 111 VGLASFSSPYKVYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 I F+S+ ++ L Sbjct: 171 QHIPFHSIGLEDMVSRL 187 >gi|284799544|ref|ZP_06390208.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava NJ9703] gi|284797352|gb|EFC52699.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava NJ9703] Length = 398 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + C+ Q+ S D L + + N TG +D IR + Sbjct: 65 ENAVHGEPCGQC--ESCT----QIDSGRYVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +++ +L L++ + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLL 221 >gi|319787610|ref|YP_004147085.1| DNA polymerase III subunits gamma/tau [Pseudoxanthomonas suwonensis 11-1] gi|317466122|gb|ADV27854.1| DNA polymerase III, subunits gamma and tau [Pseudoxanthomonas suwonensis 11-1] Length = 673 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFSELVGQEHVVRALGNALDTGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N TG VD++R + Sbjct: 65 EKGTSAEPCGQCA------ACMDIDAGRYIDLLEIDAASN--TG-------VDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGQYKVYLIDEVHMLSKAAFNALLKTLEEPPGHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L E + + ++ Sbjct: 170 CLQFNLKRLDEGQIEGQMTKI 190 >gi|82702515|ref|YP_412081.1| DNA polymerase III, delta prime subunit [Nitrosospira multiformis ATCC 25196] gi|82410580|gb|ABB74689.1| DNA polymerase III, delta prime subunit [Nitrosospira multiformis ATCC 25196] Length = 368 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 38/190 (20%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRY--AGHVLQNPDFSKAPVRMC----------NPDPC 77 +G + HALL G +G+GK RY + +N +C +PD C Sbjct: 16 TGALGHALLLRGRKGLGKLAFA-RYLAKSRLCENRSVEGKACEVCASCHWFEQGNHPDFC 74 Query: 78 SPFVKQMASHALH-----------------DFLYLSYSLNPKTGKWRTV------ITVDE 114 V+ A+ A + L ++N +G ++ I++ + Sbjct: 75 --LVEPEAATATSVSGEGAGEEGVETGDEAEVQSLPRAVNQLSGSGKSTKKPSRQISISQ 132 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR + F+++T++ +++I+I P + M+ AA+ALLK+LEEPP + LFILI+H + +L Sbjct: 133 IRELGDFVNITSHQNGYKIILIHPAETMSTAAASALLKNLEEPPLQTLFILITHQAQYLL 192 Query: 175 STIRSRCLSI 184 TIRSRC I Sbjct: 193 PTIRSRCRQI 202 >gi|261377458|ref|ZP_05982031.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC 14685] gi|269146186|gb|EEZ72604.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC 14685] Length = 722 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGEPCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 221 >gi|238019600|ref|ZP_04600026.1| hypothetical protein VEIDISOL_01469 [Veillonella dispar ATCC 17748] gi|237863798|gb|EEP65088.1| hypothetical protein VEIDISOL_01469 [Veillonella dispar ATCC 17748] Length = 346 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 23/210 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + A +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFYGEAGLGKLDMAIGLASLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N + K++ + L ++ ++ + P +T + V++ Sbjct: 62 GEAYLADVKEARLANGE----MEKRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N ANA+LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 TI SRC+ + FNS+ + + AL + I G Sbjct: 172 TIISRCMGVGFNSVDIDTIRTALVERGITG 201 >gi|255280356|ref|ZP_05344911.1| putative DNA polymerase III, delta prime subunit [Bryantella formatexigens DSM 14469] gi|255268821|gb|EET62026.1| putative DNA polymerase III, delta prime subunit [Bryantella formatexigens DSM 14469] Length = 331 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 114/219 (52%), Gaps = 20/219 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++ GH+D+ L SG++ HA + GE+G GK T+ +A + D + P Sbjct: 5 RQIIGHKDVIAHLQNAIASGKVSHAYILNGEKGSGKKTIARAFAKALNCESDEER-PCGK 63 Query: 72 CNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTG 129 C+ C ++A H D + +++ P + I+VD+IR ++ + + + Sbjct: 64 CHS--C-----RLADGGNHPDIMEITHD-KPNS------ISVDDIRGQVVEDVQVRPYSS 109 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++ +ID + M A NALLK++EEPP V+ +L++ + ++L TI SRC+ + + Sbjct: 110 PYKIYIIDDAEKMTMQAQNALLKTIEEPPSYVVVLLLTTNASSLLQTILSRCVMLNTKPV 169 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 ++ + L E +KI D + D A G++ +A+++ Sbjct: 170 PDSQVRTYLMEHVKI--PDYQADICVAFAQGNIGKAVQL 206 >gi|121728180|ref|ZP_01681215.1| cell division inhibitor [Vibrio cholerae V52] gi|121629577|gb|EAX62000.1| cell division inhibitor [Vibrio cholerae V52] Length = 540 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 +S +N+ + L+++ KI + + + AA GS+ A+ + Sbjct: 173 FHLKPISVDNIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSL 220 >gi|316984570|gb|EFV63535.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis H44/76] gi|325140612|gb|EGC63132.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis CU385] gi|325144737|gb|EGC67032.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240013] gi|325205803|gb|ADZ01256.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M04-240196] Length = 733 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 250 >gi|313204869|ref|YP_004043526.1| DNA polymerase iii, delta subunit [Paludibacter propionicigenes WB4] gi|312444185|gb|ADQ80541.1| putative DNA polymerase III, delta subunit [Paludibacter propionicigenes WB4] Length = 385 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 49/255 (19%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ G +DI+K L + R+ HA L G +GIGK L YA ++ +++ C Sbjct: 5 QIIGQQDIKKRLIRTVTEQRIPHAQLLRGPEGIGKLALAVAYAQYICCE---NRSATDSC 61 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-------YF---- 121 P K++A H L+ Y + TGK TV+ D I R YF Sbjct: 62 GVCPACVKYKKLA----HPDLHFVYPVIKPTGK-NTVVCDDFIAEFREMILENSYFGLND 116 Query: 122 -------------------------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 LSL +++++I + M+ AN LLK LEE Sbjct: 117 WYSKISGDAKQGLIYSNESEEIIRKLSLKTYESEYKIMIIWLPEKMHTTCANKLLKILEE 176 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL---EQLKIMGWDSKRDFV 213 PP+K +F+++++ I++TI SR I LSEN + +AL E+L+I ++ ++ Sbjct: 177 PPEKTVFLMVTNTPDEIITTILSRTQHIHVPRLSENEIIQALLRNEELEIE--QAEAEYA 234 Query: 214 KIAAYGSVARAIKIL 228 A GS A+ +L Sbjct: 235 AHIANGSYLNALAVL 249 >gi|108759549|ref|YP_631017.1| DNA polymerase III subunit delta' [Myxococcus xanthus DK 1622] gi|108463429|gb|ABF88614.1| DNA polymerase III, delta' subunit [Myxococcus xanthus DK 1622] Length = 344 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%) Query: 30 SGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 SG +HHA LF G +G+GK A +G A + PD C Q Sbjct: 22 SGAVHHAYLFAGPEGVGKELAAVGLAQALTCPEQPDVGCGACASC----------QRVER 71 Query: 88 ALH--------DFLYLSYSLNPK---TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 LH D +S L + TG + V+++R+++ ++L +V +I Sbjct: 72 GLHPDVTWVMPDDERVSRGLAGRSDFTGTPSRELRVEQVRQLQERIALRGLESRRKVALI 131 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 MN A NA LK+LEEPP IL++ A +L TIRSRC + F L + + + Sbjct: 132 VSAQTMNVQAQNAFLKTLEEPPSDTTIILVASAIDRLLPTIRSRCGKVHFGPLPVDMVAQ 191 Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + + + ++ + A GS+ RA+ + Sbjct: 192 RVAEARKLDAETAM-LAAVMAGGSLGRAMAL 221 >gi|326389203|ref|ZP_08210771.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994566|gb|EGD52990.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter ethanolicus JW 200] Length = 324 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 15/182 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE + ++ +A LF GE+G+GK + +A + + +K R Sbjct: 3 RIYGHEAVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINCKGETAKPCFR-- 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS +K M + F + P+ I VD IR I +++ + Sbjct: 61 ----CSSCLKIMDKNHPDVFF-----IEPEENS----IKVDTIRYITNEINIRPYEANKK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M A NA LK+LEEPP LFILI+ +L TI SRC I+FN ++N Sbjct: 108 IFIIDQADKMTVAAQNAFLKTLEEPPLYGLFILIAPQQEELLPTIVSRCNIIRFNKENKN 167 Query: 193 NL 194 + Sbjct: 168 TI 169 >gi|121635131|ref|YP_975376.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis FAM18] gi|120866837|emb|CAM10595.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis FAM18] gi|325138443|gb|EGC61009.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis ES14902] Length = 709 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL ++++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|15678010|ref|NP_274455.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis MC58] gi|66731921|gb|AAY52154.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis MC58] gi|325199941|gb|ADY95396.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis H44/76] Length = 704 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 221 >gi|315925749|ref|ZP_07921956.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter alactolyticus ATCC 23263] gi|315620858|gb|EFV00832.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter alactolyticus ATCC 23263] Length = 567 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 19/180 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L SGR+ HA L G +G GK T+ F A + N Sbjct: 25 RKYRPQTFDEVVGQDFVTRILKNQIISGRVGHAYLLTGIRGTGKTTIAKIFARAINCTDN 84 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 R NP +++ + D + + + N VDEIR IR Sbjct: 85 --------RGGNPCNACAVCREIEKPGVMDIIEIDAASNRG---------VDEIRDIREK 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + R A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 128 VKYPPTLGAYKVYIIDEVHMLTREAFNALLKTLEEPPAHVVFILATTEPNKLPMTILSRC 187 >gi|308389548|gb|ADO31868.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis alpha710] gi|325132376|gb|EGC55069.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M6190] Length = 738 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL ++++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 250 >gi|307265696|ref|ZP_07547249.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919340|gb|EFN49561.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 324 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 15/182 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE + ++ +A LF GE+G+GK + +A + + +K R Sbjct: 3 RIYGHEAVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINCKGETAKPCFR-- 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS +K M + F + P+ I VD IR I +++ + Sbjct: 61 ----CSSCLKIMDKNHPDVFF-----IEPEENS----IKVDTIRYITNEINIRPYEANKK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M A NA LK+LEEPP LFILI+ +L TI SRC I+FN ++N Sbjct: 108 IFIIDQADKMTVAAQNAFLKTLEEPPLYGLFILIAPQQEELLPTIVSRCNIIRFNKENKN 167 Query: 193 NL 194 + Sbjct: 168 TI 169 >gi|296314215|ref|ZP_06864156.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea ATCC 43768] gi|296839114|gb|EFH23052.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea ATCC 43768] Length = 727 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|291548744|emb|CBL25006.1| DNA polymerase III, subunits gamma and tau [Ruminococcus torques L2-14] Length = 530 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 27/243 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPSEFEDVKGQDHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAV----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV N PC K +A+ + + + + N VD IR IR Sbjct: 63 NCEHPV---NGSPCGECEMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L ++ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITDRMRDLMQTEQVEVEEKALRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI 240 Y+ Sbjct: 227 FYL 229 >gi|28209988|ref|NP_780932.1| DNA polymerase III subunit delta' [Clostridium tetani E88] gi|28202423|gb|AAO34869.1| DNA polymerase III delta subunit [Clostridium tetani E88] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 32/183 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHEDI+ + +GR HA + GE G+GK+ L Sbjct: 11 VIGHEDIKNHIINSIENGRFAHAYIISGEDGLGKSIL----------------------- 47 Query: 74 PDPCSPFVKQMASHALHDFLYLSYS--LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 VK++A L+ + Y+ + + K I VD+IR I ++ Sbjct: 48 -------VKEIALKLLNKEINRIYADIIEFRIKKENRSIKVDDIREINKEVNKKPYEEDK 100 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +VI+I D M + A NA LK++EEPP+ V ++I + IL TI+SRC K N LSE Sbjct: 101 KVIIIYNSDLMTKEAQNAFLKTIEEPPENVFILMICESLDNILETIKSRCQIYKLNHLSE 160 Query: 192 NNL 194 ++ Sbjct: 161 EDM 163 >gi|262276041|ref|ZP_06053850.1| DNA polymerase III delta prime subunit [Grimontia hollisae CIP 101886] gi|262219849|gb|EEY71165.1| DNA polymerase III delta prime subunit [Grimontia hollisae CIP 101886] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H++I + Q R+HHA+L G GK L A +L ++ P +C+ Sbjct: 9 HQEIWQSWQQLLGQDRLHHAILLSAPTGSGKIELAAMLAKTILCKNGVTE-PCGICHS-- 65 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C F +H DF +L K + VD IR + T+ G RVI+I Sbjct: 66 CQLF--DADTHP--DFHWLKPEAEGKQ------LGVDAIRAGNQYAWETSQLGGQRVILI 115 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 D M AANALLK+LEEPP FIL+S + T+L T+ SRC Sbjct: 116 QNADRMGEAAANALLKTLEEPPSHCHFILLSQSMDTMLPTVVSRC 160 >gi|319410691|emb|CBY91070.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis WUE 2594] Length = 709 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL ++++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|319637641|ref|ZP_07992407.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102] gi|317400796|gb|EFV81451.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102] Length = 667 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + C+ Q+ S D L + + N TG +D IR + Sbjct: 65 ENAVHGEPCGQC--ESCT----QIDSGRYVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFVLRNMTTQQVAEHL 187 >gi|225075134|ref|ZP_03718333.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens NRL30031/H210] gi|224953618|gb|EEG34827.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens NRL30031/H210] Length = 666 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + C+ Q+ S D L + + N TG +D IR + Sbjct: 65 ENAVHGEPCGQC--ESCT----QIDSGRYVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFVLRNMTTQQVAEHL 187 >gi|325130515|gb|EGC53270.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis OX99.30304] Length = 709 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLL 221 >gi|325283277|ref|YP_004255818.1| DNA polymerase III, subunits gamma and tau [Deinococcus proteolyticus MRP] gi|324315086|gb|ADY26201.1| DNA polymerase III, subunits gamma and tau [Deinococcus proteolyticus MRP] Length = 810 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 24/198 (12%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P++ + G E I+ L GR+ HA LF G +G+GK T A A Sbjct: 10 PIHWDEVVGQEHIKGVLKTALEQGRVGHAYLFSGPRGVGKTTTARLIA---------MTA 60 Query: 68 PVRMCNPDPCSPFVK----QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P PC + SH D L + + N +V+++R +R + Sbjct: 61 NCTGPQPKPCGECENCRAVRAGSHP--DVLEIDAASN---------NSVEDVRELREKVG 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G ++ ++D M+R A NALLK+LEEPP+ V+FIL + I+ TI SRC Sbjct: 110 LAPMRGGKKIYILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQH 169 Query: 184 IKFNSLSENNLYKALEQL 201 +F L+ + L L Sbjct: 170 YRFRRLTAEEIAGKLAGL 187 >gi|28898822|ref|NP_798427.1| DNA polymerase III subunit delta' [Vibrio parahaemolyticus RIMD 2210633] gi|153838837|ref|ZP_01991504.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus AQ3810] gi|260879163|ref|ZP_05891518.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus AN-5034] gi|260899206|ref|ZP_05907601.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus AQ4037] gi|28807041|dbj|BAC60311.1| DNA polymerase III, delta prime subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149747721|gb|EDM58621.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus AQ3810] gi|308093552|gb|EFO43247.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus AN-5034] gi|308108491|gb|EFO46031.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus AQ4037] Length = 320 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + ++G+ L + H L ++S C+ C K + L Sbjct: 21 SDRIPGALLLQSDKGLAVEML-VEFFSHALLCQNYSSEACGFCHS--CQ-LTKSQSHPDL 76 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + K GK ITVD+IR ++ +R+ +I+P D MN +A+NA Sbjct: 77 H------WIRPEKEGK---AITVDQIRACNRLAHESSQLNGYRLFVIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP +K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGEKCLFLLVTHNQERLLPTIRSRC 159 >gi|302390827|ref|YP_003826647.1| DNA polymerase III subunits gamma/tau [Acetohalobium arabaticum DSM 5501] gi|302202904|gb|ADL11582.1| DNA polymerase III, subunits gamma and tau [Acetohalobium arabaticum DSM 5501] Length = 586 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 23/246 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +++ + L R+ HA LF G +G GK + ++ + N Sbjct: 8 RKWRPQTFSDIVGQQNVIQTLENAIKFDRIAHAYLFCGPRGTGKTSTAKVFSKALNCNDG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C C +++ ++ D + + + N +DEIR +R + Sbjct: 68 PTVTPCSECKS--C----QKIEDNSSIDVIEIDAASNR---------GIDEIRELREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP+ V+FIL + ++L TI SRC Sbjct: 113 FFPTEGNYKVYIIDEAHMLTKEAFNALLKTLEEPPEYVIFILATTEPHSLLPTILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CDKIISSY 239 F+ LS NL +++L + + D AA ++AR+ + D D+IIS Sbjct: 173 FDFSRLSIQNL---VQRLNFISQQEEIDLTAEAAL-AIARSAEGGMRDGISLLDQIISYS 228 Query: 240 IDLIHI 245 D I I Sbjct: 229 GDRIEI 234 >gi|218887359|ref|YP_002436680.1| DNA polymerase III subunits gamma/tau [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758313|gb|ACL09212.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 688 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 33/286 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMCNP 74 G E ++ LS+ R+ A LF G +G+GK T+ R L + KAP CN Sbjct: 20 GQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIA-RILAKAL---NCEKAPTGEPCNT 75 Query: 75 -DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C V M +H D + + + N +++ RR+R + G ++V Sbjct: 76 CEQCRKVV--MGNHV--DVVEIDGASN---------RGIEDARRLREAIGYAPMEGRYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + R A NALLK+LEEPP +V F+L + TI SRC F L EN Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPENE 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAI----KILHYDCDKI-ISSYIDLIH 244 L L L G D V++ A GSV ++ ++L D++ + ++ Sbjct: 183 LEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGVLG 242 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKS 285 + QE + MQ +A + + D L I F L+E+ + Sbjct: 243 LAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELAST 288 >gi|154505547|ref|ZP_02042285.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149] gi|153794205|gb|EDN76625.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149] Length = 522 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 27/243 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F PV + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPVEFEDVKGQEHIITTLKNQIEANRIGHAYLFCGTRGTGKTTVAKIFAKAV----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV N PC + +A+ + + + + N VD IR IR Sbjct: 63 NCEHPV---NGSPCGECAMCRSIAAGTSMNVIEIDAASNNG---------VDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L + +V AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITDRMRDLMQEEQVEVEEKALRYVAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI 240 Y+ Sbjct: 227 FYL 229 >gi|302390663|ref|YP_003826484.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter oceani DSM 16646] gi|302201291|gb|ADL08861.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter oceani DSM 16646] Length = 571 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 33/254 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E I + L +G++ HA LF G +G GK + F A + Q Sbjct: 8 RRYRPRDFDEIVGQEAIVRTLKNQIRTGKIGHAYLFCGMRGTGKTSTARVFAKALNCEQG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + PC+ +A + D + + + N +D+IR +R Sbjct: 68 PTDT----------PCNRCRNCLAINEGGMIDVIEMDAASNR---------GIDDIRTLR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ + G +RV +ID V + A NALLK+LEEPP+ V+FIL + + STI S Sbjct: 109 ESVNFPPSEGRYRVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPNKLPSTILS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAI----KILHYD 231 RC+ F + L L+++ + D + ++ GS+ A+ K L + Sbjct: 169 RCMRFDFRRVQTRELVSHLKRISAENGVEAEDKALALIARSSQGSMRDALSLLDKALAFG 228 Query: 232 CDKIISSYIDLIHI 245 DK+ +Y D + + Sbjct: 229 GDKL--TYRDALSL 240 >gi|157961334|ref|YP_001501368.1| DNA polymerase III subunits gamma and tau [Shewanella pealeana ATCC 700345] gi|157846334|gb|ABV86833.1| DNA polymerase III, subunits gamma and tau [Shewanella pealeana ATCC 700345] Length = 948 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCS------ACVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 CL SL+++ + L + ++ +S + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQDEIGAQLNHILTAEQLTFEESALTLLAKAANGSMRDALSL 220 >gi|154484288|ref|ZP_02026736.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC 27560] gi|149734765|gb|EDM50682.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC 27560] Length = 541 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P ++ G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 23 RKFRPSTFDQVKGQDHIVQTLKNQINANRIGHAYLFCGTRGTGKTSVAKIFAKAVNCEHP 82 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + C + + + + + + + + N VD IR+IR + Sbjct: 83 VDGSPCNEC--ETC----RGITNGSAMNVIEIDAASNNG---------VDNIRQIRDEIQ 127 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++G + V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 128 YSPSSGKYTVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRCQR 187 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S + L + +E+ I D +V AA GS+ A+ +L D+ I+ Y Sbjct: 188 YDFKRISIDTIAARLSELMEKESIEVEDKAIRYVAKAADGSMRDALSLL----DQCIAFY 243 Query: 240 I 240 + Sbjct: 244 L 244 >gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum ferrodiazotrophum] Length = 576 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 33/196 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L++ SG M A LF GE+G+GK T+ A + Sbjct: 9 RLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILAKAINCQSG 68 Query: 64 FSKAPVRMCNPDPC-------SPFVKQM--ASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + P C+ C SP V +M ASH TG VD+ Sbjct: 69 PTATPCLECSS--CLEIAEGRSPDVTEMDGASH---------------TG-------VDD 104 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R +R L T R+++ID V ++ +A NALLK+LEEPP V+FIL + + I Sbjct: 105 VRTLRESLVYAPLTSRSRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIP 164 Query: 175 STIRSRCLSIKFNSLS 190 T+ SRC +F L+ Sbjct: 165 DTVLSRCQHFRFRLLT 180 >gi|225378657|ref|ZP_03755878.1| hypothetical protein ROSEINA2194_04326 [Roseburia inulinivorans DSM 16841] gi|225209494|gb|EEG91848.1| hypothetical protein ROSEINA2194_04326 [Roseburia inulinivorans DSM 16841] Length = 329 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 16/219 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I + L ++ HA + G GK L +A LQ K C+ Sbjct: 7 IIGHEQIIEHLQNAIGMDKVSHAYIINGPDKSGKMMLAEAFA-MALQCEKHGKEACMECH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 +Q H D +Y+++ P T I+VD+IR ++ + + + + Sbjct: 66 S------CRQALGHNQPDIIYVNHD-KPNT------ISVDDIRTQVNNDIDVKPYSSSHK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID + MN+ A NALLK++EEPP + +L++ + T L TI SRC+++ + + Sbjct: 113 IYIIDEAEKMNQQAQNALLKTIEEPPAYAVIMLLTTNADTFLPTILSRCVTLNIKVVPDE 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + K L + K D + D A G+V +AI++ D Sbjct: 173 KIKKFLME-KYQIPDYQADVCVAFAQGNVGKAIQLASSD 210 >gi|51244636|ref|YP_064520.1| DNA polymerase III, delta subunit [Desulfotalea psychrophila LSv54] gi|50875673|emb|CAG35513.1| related to DNA polymerase III, delta subunit [Desulfotalea psychrophila LSv54] Length = 338 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 21/193 (10%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---LQNPDFSK 66 Y+Q + G + ++ +++ + R+ HA LF+G G+GK A + + F+ Sbjct: 11 YSQ-VLGQQRAKQIVARAIEADRVPHAYLFKGPDGVGKKLFARGVAAALNCRERQGAFAC 69 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 C +++ S D+ + P G I +D++R + LS Sbjct: 70 GHCVSC---------RKLLSGNHPDYTVV----QPDKG----AIKIDQVRSLCRDLSFPP 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 RV++++ V M R AAN+LLK+LEEPPQ + IL + +S IL+TI SRC + F Sbjct: 113 YESPVRVVVLEDVHTMRREAANSLLKTLEEPPQNNVLILTAESSCEILTTISSRCQVVSF 172 Query: 187 NSLSENNLYKALE 199 L+EN + AL+ Sbjct: 173 YPLTENEVSTALQ 185 >gi|325198577|gb|ADY94033.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis G2136] Length = 710 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR I Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREIL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 221 >gi|291545169|emb|CBL18278.1| hypothetical protein RUM_22800 [Ruminococcus sp. 18P13] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 31/255 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L+G+ + SGR+ H+ L GEQG GK TL + A +L + + P C Sbjct: 2 KLYGNAHGLAAIEAMCTSGRLPHSFLIYGEQGTGKKTLAWYLAARLL--CEGAHKPCGSC 59 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P H + + P +GK +V+ IRR+ T N G + Sbjct: 60 KP-----------CHNVEHRQHPDVQEVPHSGKTGG-FSVESIRRVCADAYKTPNNGMRK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + + D M A NALLK +EEPP F+ + + L TI SR +I ++ +E Sbjct: 108 LYLFTDADHMTVQAQNALLKLVEEPPDFTYFVFTAQSRQAFLETILSRVSAIGTSACTEP 167 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 +AL G D+ ARA+ + H + I ++ + P + + Sbjct: 168 QCTQALLDAGYSGEDA-------------ARAVAVFHGN----IGRCLEYLSDPAVQETV 210 Query: 253 QKMQQIADELLSQDQ 267 +++AD ++++D+ Sbjct: 211 ALTKKLADSIMNRDE 225 >gi|330427296|gb|AEC18630.1| DNA polymerase III, delta' subunit [Pusillimonas sp. T7-7] Length = 636 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 17/208 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFETLIGQDHVVRALTHALSTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D++ L + N VDE+ ++ Sbjct: 65 ETGITATPCGHCQA--CT----EIDAGRFVDYVELDAASN---------RGVDEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGSGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDS 208 CL ++ ++ L++ ++G +S Sbjct: 170 CLQFNLKQMTAESIVAHLQE--VLGQES 195 >gi|241760334|ref|ZP_04758429.1| DNA polymerase III subunit tau [Neisseria flavescens SK114] gi|241319212|gb|EER55690.1| DNA polymerase III subunit tau [Neisseria flavescens SK114] Length = 666 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + C+ Q+ S D L + + N TG +D IR + Sbjct: 65 ENAVHGEPCGQC--ESCT----QIDSGRYVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFVLRNMTTQQVAEHL 187 >gi|254228481|ref|ZP_04921907.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp. Ex25] gi|262393658|ref|YP_003285512.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25] gi|151939069|gb|EDN57901.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp. Ex25] gi|262337252|gb|ACY51047.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25] Length = 701 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 157/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGKC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALE----------QLKIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L+ + K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLAAN------GVEWDGLLQQV 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|168334099|ref|ZP_02692312.1| DNA polymerase III, delta prime subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 323 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 13/181 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ I+ + + ++ H+ +FEG +G+GK +L A +L + C+ Sbjct: 3 IIGHQKIKDYFKKVIKINKISHSYIFEGNKGVGKKSLAAEIAKILLCEDAIDEIACGKCS 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K M + DF+ + K K + T+ E ++ +S+ G +++ Sbjct: 63 A------CKMMDAKVHPDFIQIE-----KDTKITKIETIKE--KLLKEVSIKPYKGKYKI 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I + + NA+LK++EEPP L L++ +L TIRSRC+ I F+ LSE Sbjct: 110 FVIAEAETLRSVGQNAILKTIEEPPTYALIFLVTTNIEMLLPTIRSRCIHISFSGLSETE 169 Query: 194 L 194 L Sbjct: 170 L 170 >gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275] gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275] Length = 560 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 21/190 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L SG + HA +F G +G GK T A + Sbjct: 7 REYRPQKFSDVVGQEHIIRTLKNEIMSGNIAHAYMFSGTRGTGKTT-----AAKI----- 56 Query: 64 FSKAPVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 F++A V NP +PC+ + L+D + ++ + +VD++R IR Sbjct: 57 FARA-VNCLNPKDGEPCNEC--ESCKSILNDSTVDIFEIDAASNN-----SVDDVREIRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T ++V +ID +++ A+NALLK++EEPP+ V+FI + ++ T+ SR Sbjct: 109 SVKYTPANSKYKVYIIDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSR 168 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 169 CQRFDFKRIT 178 >gi|258541156|ref|YP_003186589.1| DNA polymerase III subunits gamma/tau [Acetobacter pasteurianus IFO 3283-01] gi|256632234|dbj|BAH98209.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-01] gi|256635291|dbj|BAI01260.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-03] gi|256638346|dbj|BAI04308.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-07] gi|256641400|dbj|BAI07355.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-22] gi|256644455|dbj|BAI10403.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-26] gi|256647510|dbj|BAI13451.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-32] gi|256650563|dbj|BAI16497.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653554|dbj|BAI19481.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-12] Length = 657 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 114/289 (39%), Gaps = 44/289 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+ HA + G +G+GK T R L Sbjct: 52 VLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTA-RIIARALN 110 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD + P DPC +A L +TG VD++R I Sbjct: 111 CIGPDGNGGPTA----DPCGVCANCVAILNDRHPDVLEMDAASRTG-------VDDVREI 159 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ Sbjct: 160 IEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVL 219 Query: 179 SRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL------ 228 SRC + ++ L + E+ + V AA GSV + +L Sbjct: 220 SRCQRFDLRRVPQSELVGLFSRIAEKEHVRLSSDALALVARAADGSVRDGLSLLDQAIAQ 279 Query: 229 ---HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D D +I + + I+D L D+++ FD L Sbjct: 280 GTGQTDADGVIGATV-----------------ISDMLGLADREVVFDLL 311 >gi|198283699|ref|YP_002220020.1| DNA polymerase III subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666373|ref|YP_002426328.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248220|gb|ACH83813.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518586|gb|ACK79172.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 23270] Length = 572 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L SGR+HHA LF G +G+GK TL A + Sbjct: 9 RRWRPQHFDDFVGQEAVVSALRHALDSGRIHHAFLFTGTRGVGKTTLARLLAKCLNCERG 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P C+ + +A+ D L + + + VDE R + + Sbjct: 69 VSSNPCGECS------ACRSIAAGNFVDLLEVDAASRTR---------VDETRDLLDNVQ 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + T+ SRCL Sbjct: 114 YAPTAGRYKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRCLQ 173 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 L + L Q+ ++ D+ + AA GS+ A+ +L Sbjct: 174 FNLRRLDVPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLL 222 >gi|81427950|ref|YP_394949.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609591|emb|CAI54637.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus sakei subsp. sakei 23K] Length = 571 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 47/302 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L + + HA LF G +G GK + +A + N Sbjct: 8 RVWRPQRFDDVVGQETMTQTLKNAIITKQTSHAYLFTGPRGTGKTSAAKIFAKAI--NCH 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K + +PC+ + + + AL+D + + + N G V+EIR IR Sbjct: 66 YQK------DGEPCNECETCRAITAGALNDVIEIDAASN--NG-------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 AKYAPTQADYKIYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEVHKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWD-SKRDFVKIAAYGSVARAIKIL-------- 228 F ++ +L+K LEQ K M +D + + AA G + A+ IL Sbjct: 171 QRFNFKRITAADLFKRMAYILEQ-KEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSD 229 Query: 229 -HYD-----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 H + +++ Y+ IH + ALQ +QQI E +D + + LIE Sbjct: 230 NHVTLENALDVTGSLTEALLADYVQTIHDHAPKAALQLLQQILAE--GKDAQRFVEDLIE 287 Query: 277 FI 278 ++ Sbjct: 288 YV 289 >gi|309390259|gb|ADO78139.1| DNA polymerase III, delta prime subunit [Halanaerobium praevalens DSM 2228] Length = 328 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 21/217 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E+ L R+ HA LF ++G GK+ L F +A + + Sbjct: 6 IIGQEEAVSILQDEIKKERISHAYLFAAKKGSGKSKLAFEFAKAIF---------CQESE 56 Query: 74 PDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C + + H H DF +S + +T I++ +IR ++ ++ Sbjct: 57 LDSCGQCINCRKLEHQNHPDFKIISIL------EAKTAISIAQIRDLKKEIAYKPYDSEH 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I+ + M + AAN+LLK+LEEPP IL++ + +L T+ SRC I+ S+S+ Sbjct: 111 KIYVIEAAEKMTKEAANSLLKTLEEPPSFATIILLTEDTGKLLPTLVSRCQQIELKSVSQ 170 Query: 192 NNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 + + K L G +S++ + + A GS +A+ I Sbjct: 171 SKIQKLLLN---KGLNSEQAEIISRTAAGSPGKALAI 204 >gi|229917436|ref|YP_002886082.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp. AT1b] gi|229468865|gb|ACQ70637.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp. AT1b] Length = 558 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 19/180 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G I + + RM HA LF G +G GK +L A + + Sbjct: 8 RVYRPQSFQEVVGQVHITRTIQNALLEERMSHAYLFSGPRGTGKTSLAKIIAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP R +PC+ P + D + + N VDEIR IR Sbjct: 64 CESAPTR----EPCNTCPTCIAITEGTSPDVFEIDAASNNG---------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 111 VKYPPSQGRYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRC 170 >gi|153217534|ref|ZP_01951215.1| DNA polymerase III tau subunit [Vibrio cholerae 1587] gi|124113525|gb|EAY32345.1| DNA polymerase III tau subunit [Vibrio cholerae 1587] Length = 559 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|254672432|emb|CBA05798.1| DNA polymerase subunits gamma and tau [Neisseria meningitidis alpha275] Length = 739 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR I Sbjct: 94 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREIL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 250 >gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5] gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5] Length = 473 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 20/220 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + + G E + L + R+ HA LF G +G+GK T+ R L + Sbjct: 8 RKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIA-RILAKALNCKN 66 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK +PC +++ D + + + N +D++R ++ Sbjct: 67 PSKG-------EPCGECENCREIDRGVFPDLIEMDAASNR---------GIDDVRALKEA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID + + A NALLK+LEEPP + +F+L + IL TI SRC Sbjct: 111 VNYKPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGS 220 I F+ + + + + L+++ + G + + +++ A+ S Sbjct: 171 QRIIFSKVRKEKVIEYLKKICEKEGIECEEGALEVLAHAS 210 >gi|257064314|ref|YP_003143986.1| DNA polymerase III, gamma/tau subunit [Slackia heliotrinireducens DSM 20476] gi|256791967|gb|ACV22637.1| DNA polymerase III, gamma/tau subunit [Slackia heliotrinireducens DSM 20476] Length = 373 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 56/298 (18%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 AFD +Y G + ++L SG++ A LF G G K + +A +L++ D Sbjct: 4 AFDTIY-----GQPKVREYLRTCVASGKVSQAYLFTGMAGSNKTAAAYAFAEEILKS-DT 57 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + A +M +++ + +H D Y+ P+ + V++IR I + Sbjct: 58 ADANEKM--------EIRRKVTRRVHPDVRYVV----PEGAQG---YLVEQIREIVSDCA 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +V ++D VD M + ANA LK+LEEPP V+F+L+ S +LSTI SRC Sbjct: 103 MAPVQAKRKVYILDRVDLMGTSPANAFLKTLEEPPSDVVFLLLGRTSSAVLSTIVSRCQV 162 Query: 184 IKFNSLSEN--------------------------NLYKALEQLKIMGWDSKRDFVKIAA 217 + F ++ + ++ K LE LK + RD V + Sbjct: 163 VPFRNIPASEATAILVQNSQASTPQAMIAIQACNGSVTKGLEFLKSPERQAYRDKV-LLV 221 Query: 218 YGSVARA--IKILHYDCDKIISSYIDLIHIPR-QEYALQK----MQQIADELLSQDQK 268 S+ARA + +L Y D + ++ L + R QE L++ +Q+ A + L QK Sbjct: 222 LASLARADDLDVLSYASDIVSATKTPLDAVRREQERTLEESSEFLQRSALKALEARQK 279 >gi|167902380|ref|ZP_02489585.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei NCTC 13177] Length = 428 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 28/304 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQL 295 +G L Sbjct: 286 AGLL 289 >gi|325201859|gb|ADY97313.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240149] Length = 706 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLL 221 >gi|325134576|gb|EGC57220.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M13399] Length = 709 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLL 221 >gi|326424114|ref|NP_761801.2| DNA polymerase III subunit delta' [Vibrio vulnificus CMCP6] gi|319999495|gb|AAO11328.2| DNA polymerase III delta prime subunit [Vibrio vulnificus CMCP6] Length = 318 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 24/226 (10%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPD-----------FSKAPVRMCNPDPCSPFVK 82 H+ L QG+ A R G +L D FS A + PD F Sbjct: 3 HYPWLASTWQGLQSAMSAQRLPGAILLQSDVELGVDELIEKFSAALLCKTYPDEGCGFCH 62 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + L + K GK ITV++IR+ ++ G +R+ +I+P + M Sbjct: 63 SCELLKSQNHPDLHFIRPEKEGK---AITVEQIRQCNRQAQESSQMGGYRLFVIEPAEAM 119 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N +A+NALLK+LEEP LF+LI H +L TI SRC S++ + +++ L+ Sbjct: 120 NESASNALLKTLEEPSGSCLFLLICHDKKRLLPTIISRCQQW---SITPPEVSVSMQWLQ 176 Query: 203 IMGWDSKRDFVKIAAYGSV-----ARAIKILHYDCDKIISSYIDLI 243 G F+K+A Y V A+ + HY +K+ ++D + Sbjct: 177 QQGVSVNESFLKLAHYSPVTAMHMAKESEFQHY--EKLERQFVDFL 220 >gi|167845385|ref|ZP_02470893.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei B7210] Length = 391 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 28/295 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I F+ AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 +++ + + ++ Q Y M ++ D L + D E L+ + SA Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSA 280 >gi|297205020|ref|ZP_06922416.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii JV-V16] gi|297149598|gb|EFH29895.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii JV-V16] Length = 593 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 24/193 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L ++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----VGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ K S A+ D + + + N VDEIR IR Sbjct: 63 ---NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNL 194 F +S+ NL Sbjct: 171 QRYNFKRISKQNL 183 >gi|212696577|ref|ZP_03304705.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM 7454] gi|212676433|gb|EEB36040.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM 7454] Length = 582 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 48/302 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E + L SG++ HA LF GE+G GK T +A + NP Sbjct: 9 REYRPQKFSDVLGQERVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +P +C + C K + + D + + + N + +D+IR ++ + Sbjct: 69 -IDSSPCGIC--ENC----KSIEDESTMDVVEMDAASNRR---------IDDIRNLKETV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 113 VYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRVQ 172 Query: 183 SIKFNSLSE----NNLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + + L I M +++K D + A G++ A+ IL D+++S Sbjct: 173 KFEFNKIGRDDIIKQIDIILNDRNISMEYEAK-DLIVKKAKGAMRDALSIL----DQVLS 227 Query: 238 SYIDLIHIPRQEYALQKMQQI------------ADELLSQDQKIAFDFLIEFILKEICKS 285 I + + LQ ++ I D ++S +QK + + L F LKE K Sbjct: 228 -------IDKDNFLLQDVENILGVVDFYSLDKLVDNIISYNQKDSLEIL--FKLKENGKD 278 Query: 286 AK 287 + Sbjct: 279 DR 280 >gi|317477107|ref|ZP_07936348.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|316906650|gb|EFV28363.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 606 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 SPTAEGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN +S Sbjct: 174 IYDFNRIS 181 >gi|33519765|ref|NP_878597.1| DNA polymerase III subunit gamma [Candidatus Blochmannia floridanus] gi|33504110|emb|CAD83372.1| DNA polymerase III subunit gamma [Candidatus Blochmannia floridanus] Length = 541 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 47/311 (15%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 RMHHA +F G +G GK T+ +A + + C CS + S Sbjct: 35 NRMHHAYIFTGTRGSGKTTIARLFAKGLNCETQITSDVCGSC--KNCS----DIESGCFI 88 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K R+ + ++Y + + G ++V +ID V ++R++ NAL Sbjct: 89 DLIEIDAASKSKVEDTRSFLD-----NVQY----SPSQGKFKVYLIDEVHMLSRHSFNAL 139 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI------- 203 LK+LEEPP+ V FIL++ + TI SRCL F L N+ + + QLK Sbjct: 140 LKTLEEPPKHVKFILVTTEYQKLPETILSRCLQFYFKPL---NIIQIVTQLKYICNQENI 196 Query: 204 -MGWDSKRDFVKIAAYGSVARAIKILHYD--------CDKIISSYIDLIHIPRQEYALQK 254 + ++ +F+ AA GS+ A+ +L +I+S + L+HI E+AL Sbjct: 197 NIDTENSLEFLAYAARGSIRDALNLLEQAMILGKNNITIDVINSMLGLLHI---EHALSL 253 Query: 255 MQQIA----DELLSQDQK-----IAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIY 305 ++ + +++++Q I +D+L E IL + K A L+ I +I Sbjct: 254 IESLTNGNINKIMNQIDNYSILGINWDYLFEEILIVLQKIAIYQFSPHSLKNQISIVEIK 313 Query: 306 FSLVKRVHAFS 316 + KR+H S Sbjct: 314 -DIEKRMHKLS 323 >gi|153828104|ref|ZP_01980771.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39] gi|148876346|gb|EDL74481.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39] Length = 462 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|53804576|ref|YP_113790.1| DNA polymerase III, gamma and tau subunits, programmed frameshift [Methylococcus capsulatus str. Bath] gi|53758337|gb|AAU92628.1| DNA polymerase III, gamma and tau subunits [Methylococcus capsulatus str. Bath] Length = 547 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L+ +GRMHHA LF G +G+GK TL R L D Sbjct: 8 RKWRPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLA-RILAKALNCED 66 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 A +PC +++ D + + + K V++ R + Sbjct: 67 RQGA-------NPCGRCLICREVDEGRFIDLIEVDAASRTK---------VEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N G ++V +ID V ++ ++ NALLK+LEEPP V F+L + I T+ SRC Sbjct: 111 VQYAPNQGRYKVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 L L+ + + Q+ Sbjct: 171 LQFNLKRLTPEQIRAQMAQI 190 >gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] Length = 566 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 99/232 (42%), Gaps = 40/232 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ HA LF G +G GK ++ +A V +N Sbjct: 7 RKYRPQTFNDIVGQNHIVSVLKNAIEKNQISHAYLFYGPRGTGKTSIAKIFANEVNKNEV 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + K V + D S G VDE+R I+ + Sbjct: 67 YQKENVDIIEIDAAS-----------------------NNG-------VDEVRDIKEAIK 96 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 97 FLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQR 156 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRD-----FVKIA--AYGSVARAIKIL 228 +F +LS L ++LK + + + D KIA A G + AI IL Sbjct: 157 FEFKNLSVEQLE---DRLKYISENERLDIEEDAIKKIATLAKGGLRDAISIL 205 >gi|325208389|gb|ADZ03841.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis NZ-05/33] Length = 735 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLL 250 >gi|256852105|ref|ZP_05557492.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN] gi|260661325|ref|ZP_05862238.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN] gi|282934786|ref|ZP_06340024.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] gi|256615517|gb|EEU20707.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN] gi|260547780|gb|EEX23757.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN] gi|281301149|gb|EFA93455.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] Length = 593 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 24/193 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L ++ HA LF G +G GK + +A + Sbjct: 13 RTFDSV-----VGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ K S A+ D + + + N G VDEIR IR Sbjct: 63 ---NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASN--NG-------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNL 194 F +S+ NL Sbjct: 171 QRYNFKRISKQNL 183 >gi|297624591|ref|YP_003706025.1| DNA polymerase III subunits gamma and tau [Truepera radiovictrix DSM 17093] gi|297165771|gb|ADI15482.1| DNA polymerase III, subunits gamma and tau [Truepera radiovictrix DSM 17093] Length = 522 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 17/194 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ ++ G E ++ L GR+ HA LF G +G+GK T A V N + Sbjct: 10 PITFAQVVGQEHVKAPLQAALAKGRVGHAYLFSGPRGVGKTTTARLLAMAV--NCEGEDR 67 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C S + + +H D L + N +V++IR +R + L + Sbjct: 68 PCGACE----SCLLVRRGAHP--DVTELDAASN---------NSVEDIRDLREKVRLASL 112 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G RV ++D ++++A+NALLK+LEEPP+ ++FIL + + TI SR +F Sbjct: 113 RGGRRVWVLDEAHMLSKSASNALLKTLEEPPEGLVFILATTEPEKLPPTILSRTQHFRFR 172 Query: 188 SLSENNLYKALEQL 201 LSE + L L Sbjct: 173 RLSEAEIASKLRAL 186 >gi|266621803|ref|ZP_06114738.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi DSM 13479] gi|288866492|gb|EFC98790.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi DSM 13479] Length = 540 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + + L S R+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPASFEDVRGQDHVVQTLKNQMVSDRIGHAYLFCGTRGTGKTSIAKIFAKAVNCESP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + + N V+ IR IR + Sbjct: 68 VDGSPCGECRT------CKNIAAGSSLNVVEIDAASNNG---------VENIREIRDEVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 113 YPPTEGKYRVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVMSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + L++L I D ++ AA G++ A+ +L Sbjct: 173 YDFKRITVDTIVTHLQKLTEAEHISVEDKALAYIAKAADGAMRDALSLL 221 >gi|56707355|ref|YP_169251.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis SCHU S4] gi|110669825|ref|YP_666382.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis FSC198] gi|224456423|ref|ZP_03664896.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis MA00-2987] gi|254370941|ref|ZP_04986946.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|254874189|ref|ZP_05246899.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56603847|emb|CAG44823.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis SCHU S4] gi|110320158|emb|CAL08206.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis FSC198] gi|151569184|gb|EDN34838.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|254840188|gb|EET18624.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158487|gb|ADA77878.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis NE061598] Length = 546 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I Y + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILYNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|330993788|ref|ZP_08317720.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1] gi|329759056|gb|EGG75568.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1] Length = 690 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 84/196 (42%), Gaps = 14/196 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L + GR+ HA + G +G+GK T R L Sbjct: 64 VLARKYRPTTFDDLIGQETTVRILRNAFAQGRVAHAFMLTGVRGVGKTTTA-RIIARALN 122 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P DPC +A A L +TG VD++R I Sbjct: 123 CTGPDGRGGPTA----DPCGVCPNCVAILADRHPDVLEIDAASRTG-------VDDVREI 171 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 G +V +ID V ++RNA NALLK+LEEPP +V FI + +L T+ Sbjct: 172 IEATRFRPLQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVLVTVL 231 Query: 179 SRCLSIKFNSLSENNL 194 SRC + + + L Sbjct: 232 SRCQTFALRRVPQVEL 247 >gi|325136513|gb|EGC59117.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M0579] Length = 738 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR I Sbjct: 94 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREIL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 250 >gi|62261627|gb|AAX78003.1| unknown protein [synthetic construct] Length = 581 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 25/206 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + ++HHA LF G +G+GK TLG A + + P C + C + +++ Sbjct: 60 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC--ENCVA----INNNSF 113 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + + +TG V+E + I Y + + G ++V +ID V +++ + NA Sbjct: 114 IDLIEIDAA--SRTG-------VEETKEILYNIQYMPSQGRYKVYLIDEVHMLSKQSFNA 164 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM----- 204 LLK+LEEPP+ V FIL + I TI SRC+ + +S+ ++ +QLKI+ Sbjct: 165 LLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIK---DQLKIILAKEN 221 Query: 205 --GWDSKRDFVKIAAYGSVARAIKIL 228 + +++ A GS+ A+ +L Sbjct: 222 INSDEQSLEYIAYHAKGSLRDALSLL 247 >gi|308125922|ref|ZP_07663570.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus K5030] gi|308114681|gb|EFO52221.1| DNA polymerase III, delta' subunit [Vibrio parahaemolyticus K5030] Length = 175 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + ++G+ L + H L ++S C+ S + + SH Sbjct: 21 SDRIPGALLLQSDKGLAVEML-VEFFSHALLCQNYSSEACGFCH----SCQLTKSQSHP- 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D ++ K GK ITVD+IR ++ +R+ +I+P D MN +A+NA Sbjct: 75 -DLHWIRPE---KEGK---AITVDQIRACNRLAHESSQLNGYRLFVIEPADAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP +K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGEKCLFLLVTHNQERLLPTIRSRC 159 >gi|325128498|gb|EGC51376.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis N1568] Length = 709 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLL 221 >gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108] gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108] Length = 611 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172 >gi|77747513|ref|NP_297966.2| DNA polymerase III subunit delta' [Xylella fastidiosa 9a5c] Length = 319 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + A VL ++ + C +++ + Sbjct: 22 AGHLGHGLLLCGPEGLGQRAVALALADTVL-GKGLTEVARQRC---------RKLITAGT 71 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 72 HPDLQLVSFIPMKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + TIRSRC ++F Sbjct: 132 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFK 170 >gi|289671978|ref|ZP_06492868.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. syringae FF5] Length = 243 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 51/73 (69%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R + F+ TA G +V++++PV+ MN NAANALLKSLEEP + +L+SH Sbjct: 1 IKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNTNAANALLKSLEEPSGNTVLLLVSHQ 60 Query: 170 SPTILSTIRSRCL 182 +L T++SRC+ Sbjct: 61 PSRLLPTVKSRCV 73 >gi|153824968|ref|ZP_01977635.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2] gi|149741480|gb|EDM55510.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTEHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|229515436|ref|ZP_04404895.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21] gi|229347205|gb|EEO12165.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|218132111|ref|ZP_03460915.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697] gi|217985761|gb|EEC52102.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697] Length = 607 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L + ++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCMSP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 69 TAEGEACNQC--ESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN +S Sbjct: 174 IYDFNRIS 181 >gi|254291725|ref|ZP_04962511.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae AM-19226] gi|150422318|gb|EDN14279.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae AM-19226] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|300716240|ref|YP_003741043.1| DNA polymerase III, delta\' subunit [Erwinia billingiae Eb661] gi|299062076|emb|CAX59192.1| DNA polymerase III, delta\' subunit [Erwinia billingiae Eb661] Length = 332 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 15/171 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 + LSQ+ +GR HHALL + G+G A+L + + ++ Q D K+ C+ Sbjct: 13 QILSQHQ-AGRGHHALLLQALPGMGDASLVWGISRWLMCQRRDGLKS-CGECH------A 64 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + M +H D+ YSL + GK + I +D +R I L A G +V+ I Sbjct: 65 CQLMQAHTHPDW----YSLEAEKGK--SSIGIDAVRSITEKLYHHAQQGGAKVVWIPDAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 + AANALLK+LEEPP+ F+L S +L+T+RSRCL+ + E Sbjct: 119 QLTEAAANALLKTLEEPPKNTWFLLCSQQPAQLLATLRSRCLNFHLSPPDE 169 >gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 575 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 29/262 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + + HA LF G +G+GK T +A + N Sbjct: 9 RKYRPATFRSVIGQNSLTTTLKNAIITRHLAHAYLFCGPRGVGKTTCARIFAKTI--NCS 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 CN C V + +L+ F + S N +VD+IR + + Sbjct: 67 NITEEGEACNQ--CESCVSFNENRSLNIFEMDAASNN----------SVDDIRELVKQVM 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +RV +ID V ++ A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 115 VPPQIGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPEYAIFILATTEKHKILPTIISRCQV 174 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-------AYGSVARAI----KILHYDC 232 FN + N+ ++ LK + + K D A A G++ A+ +I+ Y Sbjct: 175 YDFNRIQIND---TVDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYCG 231 Query: 233 DKII-SSYIDLIHIPRQEYALQ 253 +KI ID++++ EY LQ Sbjct: 232 NKITYKEVIDILNVLDYEYYLQ 253 >gi|254805224|ref|YP_003083445.1| putative DNA polymerase III tau and gamma chain [Neisseria meningitidis alpha14] gi|254668766|emb|CBA06660.1| putative DNA polymerase III tau and gamma chain [Neisseria meningitidis alpha14] Length = 710 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|253996278|ref|YP_003048342.1| DNA polymerase III subunits gamma and tau [Methylotenera mobilis JLW8] gi|253982957|gb|ACT47815.1| DNA polymerase III, subunits gamma and tau [Methylotenera mobilis JLW8] Length = 564 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +CN C+ K D + + + N + VD +R + Sbjct: 65 ETGITAKPCGVCNA--CTEIDKGR----FVDLIEVDAASNTQ---------VDAMRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTAGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL ++ ++L L Q I + + AA GS+ A+ + Sbjct: 170 CLQFNLRQMAGTSITSHLQNILTQENIAFEPTALHLISRAAAGSMRDALSL 220 >gi|254226377|ref|ZP_04919965.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51] gi|125621066|gb|EAZ49412.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51] Length = 665 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 39/333 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK----------- 226 L +S N+ + L+++ + + DSK + + AA GS+ A+ Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 227 ILHYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEI 282 ++ D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQL 289 Query: 283 CK----SAKAAALSGQLEEADQIAQIYFSLVKR 311 + A A L L EA +I + +L + Sbjct: 290 HRIAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|229529855|ref|ZP_04419245.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae 12129(1)] gi|229333629|gb|EEN99115.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae 12129(1)] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|149375243|ref|ZP_01893015.1| DNA polymerase III, delta prime subunit [Marinobacter algicola DG893] gi|149360607|gb|EDM49059.1| DNA polymerase III, delta prime subunit [Marinobacter algicola DG893] Length = 334 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 15/169 (8%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH-VLQNPDF-SKAPVRMCNPD 75 ED L Q RM HAL+ GE G+GK AG V + D + +P +C Sbjct: 5 EDAWGRLLQRIAGNRMPHALMVTGENGVGKRLFANALAGLLVCEKADMDAGSPCGICKQ- 63 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C ++ + H + +Y+ P+ + +I +D+IR + F + +V + Sbjct: 64 -C-----ELVAAGTHPDIR-TYA--PEKSR---MIKIDQIRSLSAFAVGSPQVASRKVAI 111 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ID D +N N+ANALLK+LEEP + V+ +L+ + +L TIRSRC S+ Sbjct: 112 IDRADQLNINSANALLKTLEEPAEDVVLLLLQESGRPVLPTIRSRCQSL 160 >gi|148265182|ref|YP_001231888.1| DNA polymerase III, delta prime subunit [Geobacter uraniireducens Rf4] gi|146398682|gb|ABQ27315.1| DNA polymerase III, delta prime subunit [Geobacter uraniireducens Rf4] Length = 320 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 19/214 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G L + +GR+ HA LFEG +G+GK V + C Sbjct: 6 ILGQNSAISILQRSLATGRLAHAYLFEGTEGVGKKATALALIEAVFCGKEEG------CG 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P + + LH L G + I +D+IR ++ L+ + Sbjct: 60 ACPSCRKIAALQHPDLH--------LVEPDGAF---IKIDQIRDLQKDLAYRPFEAPKKA 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + N+ A NALLK+LEEPP L IL++ S +L TI SRC + F +L E Sbjct: 109 CIIDGAERFNQAAGNALLKTLEEPPGNALIILVTAQSSGVLPTILSRCQRLHFQTLPEET 168 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L + I G ++ A GS+ +A++I Sbjct: 169 IAAYLGRNGIDGEAAR--IAASLAGGSMKKALEI 200 >gi|325264933|ref|ZP_08131661.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5] gi|324029922|gb|EGB91209.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5] Length = 524 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPTEFADVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + +A+ + + + + N VD IR IR ++ Sbjct: 68 ADGSPCGEC------AMCRSIAAGTSMNVIEIDAASNNG---------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQH 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + L++L + D +V AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFKRITIETISDRLKELMVTEQVEVEDRAIRYVAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum Pei191] gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum Pei191] Length = 627 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 11/196 (5%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E I K L+ GR+ HA LF G +G GK T +A + + + Sbjct: 18 YRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKALNCTGNGN 77 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K C C P ++A+ + D L L + N + K R I +D + +L Sbjct: 78 KPAASPCGK--C-PQCIEIANGSDMDVLELDAASNTQVDKIREAI-IDTV-------ALA 126 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +++ ++D V ++ ++ NALLK++EEPP V+FIL + + +TI SRC + + Sbjct: 127 ATRDRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFR 186 Query: 186 FNSLSENNLYKALEQL 201 F +++ ++ L L Sbjct: 187 FRPITQEDISAHLTAL 202 >gi|52842953|ref|YP_096752.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630064|gb|AAU28805.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 556 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 29/242 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C A+ Y+ K R T D + I+Y Sbjct: 68 ITSEPCLHC--DTCI---------AIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V +++++ NALLK+LEEPP V FIL + + T+ SRCL Sbjct: 114 -APTNGRFKVYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKILHYDCDKII 236 L + +QL+++ + + DF + AA GS+ A+ +L D+ I Sbjct: 173 FNLKHLPAELIN---QQLQLILQEERLDFEIQALDILAQAARGSMRDALSLL----DQAI 225 Query: 237 SS 238 +S Sbjct: 226 TS 227 >gi|297578658|ref|ZP_06940586.1| DNA polymerase III [Vibrio cholerae RC385] gi|297536252|gb|EFH75085.1| DNA polymerase III [Vibrio cholerae RC385] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|229525663|ref|ZP_04415068.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv. albensis VL426] gi|229339244|gb|EEO04261.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv. albensis VL426] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 39/331 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK-----------IL 228 +S N+ + L+++ + + DSK + + AA GS+ A+ ++ Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVV 232 Query: 229 HYDCDKIISSYIDLIHIPR--QEYALQKMQQIAD--ELLSQDQKIAFDFLIEFILKEICK 284 D + +D H Q +LQ Q + D E L+Q+ + +D L++ + ++ + Sbjct: 233 KSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQN-GVEWDGLLQQLSTQLHR 291 Query: 285 ----SAKAAALSGQLEEADQIAQIYFSLVKR 311 A A L L EA +I + +L + Sbjct: 292 IAMYQALPATLDKSLPEASRIESLAKTLAPQ 322 >gi|218129111|ref|ZP_03457915.1| hypothetical protein BACEGG_00685 [Bacteroides eggerthii DSM 20697] gi|317474892|ref|ZP_07934161.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|217988746|gb|EEC55065.1| hypothetical protein BACEGG_00685 [Bacteroides eggerthii DSM 20697] gi|316908795|gb|EFV30480.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 374 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 34/292 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E ++ L Q GR+ HA LF G G GK L YA ++ Sbjct: 6 VIGQEAAKQRLIQEVQEGRIPHAQLFCGPAGTGKLPLALAYARYICCPNRTETDACGTCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGK- 105 L +PD F + C ++ L++ + L++ LN + Sbjct: 66 SCVKWNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRHFVLNNPYFSLNHWLNAMGAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G ++V ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 GQAIIYAKESDEITRKLSLKSSEGGYKVTIVWLPEKMHEVCANKLLKLLEEPPEKTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAAYGSVARA 224 +S A ILSTI SR + E ++ AL+ + + DS+ + A G+ +A Sbjct: 186 VSEAPEMILSTILSRTQRFNIRKIEETSIADALQRKYGVQPIDSQT--IAHLANGNFIKA 243 Query: 225 IKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 ++ +H + + + +I L+ + Q +++M+Q +++L + ++ +FL Sbjct: 244 LETIHLNEENELFFNLFISLMRLSYQR-KIREMKQWSEQLAAMGRERQKNFL 294 >gi|325204430|gb|ADY99883.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240355] Length = 706 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C + C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVC--ESCT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLL 221 >gi|323694375|ref|ZP_08108548.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323501615|gb|EGB17504.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 329 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 16/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ ++ L + ++ HA + GE+G+G+ T+ +A +L K P C+ Sbjct: 7 IIGHDMVKDHLQKAIEYHKVSHAYILSGEEGMGRKTIARAFATTLLCEKS-DKEPCMQCH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D +++++ P + I VD+IR +I + + + ++ Sbjct: 66 S------CKQIMSGNHPDVIWVTHE-KPAS------IGVDDIRVQINDTIMVKPYSSGYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + M+D + M A NALLK++EEPP + IL++ L TI SRC+ +K L + Sbjct: 113 IYMVDEAEKMTVQAQNALLKTIEEPPAYAVIILMTTNQEVFLPTILSRCIQLKLRPLKDY 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L ++ + +SK D A G++ +AI + Sbjct: 173 VVSGYLSEMMEVP-ESKADIYAAFARGNLGKAIHL 206 >gi|56478514|ref|YP_160103.1| DNA-directed DNA polymerase III, delta subunit [Aromatoleum aromaticum EbN1] gi|56314557|emb|CAI09202.1| DNA-directed DNA polymerase III, delta subunit [Aromatoleum aromaticum EbN1] Length = 353 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 82/177 (46%), Gaps = 30/177 (16%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGH---VLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 R+ HALLF G G+GK L A PD C D C+ Q+ Sbjct: 19 RLPHALLFVGPAGLGKRDLADALAARLLCATPRPDG-------CACDRCT--TCQLRRSG 69 Query: 89 LHDFLYL---SYSLNPKTG---------------KWRTVITVDEIRRIRYFLSLTANTGY 130 H L++ + + G K T I +++IR ++ LS+T + Sbjct: 70 NHPDLFMIVPAADMEAGNGDESREGGERDIGSAKKKSTQIVIEQIRDLQQSLSVTGHQSG 129 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 RVI++DP + MN ANALLK LEEPP LF+L+S A +L TIRSRC F+ Sbjct: 130 RRVIVVDPAEAMNPYTANALLKLLEEPPAGCLFVLVSSAPRRLLPTIRSRCQQWSFS 186 >gi|270294643|ref|ZP_06200845.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276110|gb|EFA21970.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 375 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 38/294 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV---- 69 + G E ++ L Q GR+ HA LF G G+GK L YA ++ P+ ++ Sbjct: 7 IIGQEAAKQRLIQEVQEGRIPHAQLFCGPAGVGKLPLALAYARYIC-CPNRTETDACGTC 65 Query: 70 -------RMCNPDP--CSPFVKQMAS-------------HALHDFLY--LSYSLNPKTGK 105 ++ +PD P VK H L + Y L++ LN + Sbjct: 66 PSCVKWNKLVHPDVHFVYPIVKSAKGKKEVCDDYIANWRHLLQNSPYFGLNHWLNEMDAE 125 Query: 106 -WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + +I E I LSL ++ G ++V ++ + ++ AN LLK LEEPP+K +F+ Sbjct: 126 NGQAIIYAKESDEITRKLSLKSSEGGYKVTIVWLPEKLHEVCANKLLKLLEEPPEKTIFL 185 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVA 222 LIS A IL TI SR + E ++ +AL+Q + RD IA A G Sbjct: 186 LISEAPEMILPTILSRTQRFNIPKIEEADIAEALQQKYGV---QPRDSETIAHLANGDFI 242 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + + ++ L+ + Q +++M+Q +++L + ++ +FL Sbjct: 243 KALETIHLNEENELFFNLFVSLMRLSYQR-KIREMKQWSEQLAAMGRERQKNFL 295 >gi|229523159|ref|ZP_04412566.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM 11079-80] gi|229339522|gb|EEO04537.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM 11079-80] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|255690089|ref|ZP_05413764.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii DSM 17565] gi|260624368|gb|EEX47239.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii DSM 17565] Length = 618 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCI 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D++IS Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVIS 228 >gi|194333391|ref|YP_002015251.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gi|194311209|gb|ACF45604.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] Length = 389 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 35/246 (14%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---LQNPDFSKAPVRMCNP----- 74 L + + R+ HA LF G +GIGK + F A + ++PD K +C Sbjct: 15 ILKKSLAADRLAHAYLFSGPEGIGKEAVAFELAKQLNCSQRSPDPQKGSCDICESCLQAT 74 Query: 75 ---DPCSPFVKQMASHALHDFLYLSYSLNPK--TGKWRTVITVDEIRRIRYFLSLTANT- 128 P +V + S L D + S S N K K R +++ +R YF + + Sbjct: 75 AFLHPNIEYVFPVES-VLLDQIDPSKSENKKFSEAKARYEALIEQKKRNPYFTPVMERSM 133 Query: 129 --------------------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 G +V +I + +N++AAN LLK LEEPP+ VLFIL+S Sbjct: 134 AILTEQVSDLQQKAAFMPSGGGRKVFIISQAEKLNQSAANKLLKLLEEPPKHVLFILVSS 193 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +IL TIRSRC +KF+ + + L + F+ A+ G++ +A+ + Sbjct: 194 RPESILPTIRSRCQILKFSRIKPAEMEAWLSAACPAADEDILRFIVSASRGNLEKALDLS 253 Query: 229 HYDCDK 234 D+ Sbjct: 254 RSITDQ 259 >gi|261392295|emb|CAX49821.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis 8013] Length = 709 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLL 221 >gi|167038528|ref|YP_001666106.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038730|ref|YP_001661715.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter sp. X514] gi|256751398|ref|ZP_05492277.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300913685|ref|ZP_07131002.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter sp. X561] gi|307723300|ref|YP_003903051.1| DNA polymerase III subunit delta' [Thermoanaerobacter sp. X513] gi|320116924|ref|YP_004187083.1| DNA polymerase III subunit delta' [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852970|gb|ABY91379.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter sp. X514] gi|166857362|gb|ABY95770.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749780|gb|EEU62805.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300890370|gb|EFK85515.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter sp. X561] gi|307580361|gb|ADN53760.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter sp. X513] gi|319930015|gb|ADV80700.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 324 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 15/182 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE + ++ +A LF GE+G+GK + +A + + +K + Sbjct: 3 RIYGHETVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINCKGETAKPCFK-- 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS +K M + F + P+ I VD IR I +++ + Sbjct: 61 ----CSSCLKVMDKNHPDVFF-----IKPEENS----IKVDTIRYITNEINIRPYEANKK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M A NA LK+LEEPP LFILI+ +L TI SRC ++FN + N Sbjct: 108 IFIIDQADKMTAAAQNAFLKTLEEPPLYGLFILIASQQQELLPTIVSRCNIVRFNKENRN 167 Query: 193 NL 194 + Sbjct: 168 TI 169 >gi|15641067|ref|NP_230699.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819387|ref|ZP_01972054.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC 8457] gi|227081227|ref|YP_002809778.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2] gi|229505351|ref|ZP_04394861.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX 330286] gi|229510979|ref|ZP_04400458.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33] gi|229518100|ref|ZP_04407544.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9] gi|229608370|ref|YP_002879018.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236] gi|254848183|ref|ZP_05237533.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10] gi|255745471|ref|ZP_05419419.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101] gi|298498838|ref|ZP_07008645.1| DNA polymerase III [Vibrio cholerae MAK 757] gi|9655520|gb|AAF94213.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510068|gb|EAZ72662.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC 8457] gi|227009115|gb|ACP05327.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2] gi|229344815|gb|EEO09789.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9] gi|229350944|gb|EEO15885.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33] gi|229357574|gb|EEO22491.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX 330286] gi|229371025|gb|ACQ61448.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236] gi|254843888|gb|EET22302.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10] gi|255736546|gb|EET91943.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101] gi|297543171|gb|EFH79221.1| DNA polymerase III [Vibrio cholerae MAK 757] Length = 692 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|306825065|ref|ZP_07458407.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432501|gb|EFM35475.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 551 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNHCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++Y LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|295105372|emb|CBL02916.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium prausnitzii SL3/3] Length = 628 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 23/200 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G I L +GR+ HA LF G +G GK T F A + L Sbjct: 7 RKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCLH- 65 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PV N DPC K + + +L D + + + N VD+IR +R Sbjct: 66 ------PV---NGDPCGECEICKGIDNGSLLDVVEMDAASNNG---------VDDIRDLR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI S Sbjct: 108 DETAYTPSACQYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILS 167 Query: 180 RCLSIKFNSLSENNLYKALE 199 RC F + ++ + +E Sbjct: 168 RCQRYDFTRIGPEDIARRVE 187 >gi|9105556|gb|AAF83486.1|AE003911_8 DNA polymerase III, delta subunit [Xylella fastidiosa 9a5c] Length = 330 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G + H LL G +G+G+ + A VL ++ + C +++ + Sbjct: 33 AGHLGHGLLLCGPEGLGQRAVALALADTVL-GKGLTEVARQRC---------RKLITAGT 82 Query: 90 HDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L L + KT K RT I +++IR + L LT G +V++IDP D +N A N Sbjct: 83 HPDLQLVSFIPMKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAINPAACN 142 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ALLK+LEEP LIS + TIRSRC ++F Sbjct: 143 ALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFK 181 >gi|118578743|ref|YP_899993.1| DNA polymerase III, subunits gamma and tau [Pelobacter propionicus DSM 2379] gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379] Length = 569 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 9 VLARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHAFLFSGARGVGKTSTARILAKALNC 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P ++ D + + N TG VD+IR +R Sbjct: 69 ERGVSTEPCNTC------PLCIEITKGTSTDVFEIDGASN--TG-------VDDIRELRD 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ NA NALLK+LEEPP+ V FI + + TI SR Sbjct: 114 NAKYLPSHSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSR 173 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + L Q+ Sbjct: 174 CQRFDFKRIPLAKIIGRLRQI 194 >gi|309379703|emb|CBX21692.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 707 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|162448237|ref|YP_001621369.1| DNA polymerase III subunits gamma and tau [Acholeplasma laidlawii PG-8A] gi|161986344|gb|ABX81993.1| DNA polymerase III, gamma and tau subunit [Acholeplasma laidlawii PG-8A] Length = 564 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + +FG + I + L + ++ HA +F G +G GK ++ A + L+ Sbjct: 8 RTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAKALNCLEA 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +K P C D C + + D + + + N G VDEIR +R Sbjct: 68 P--AKEPCGKC--DVCL----GVDRGDVPDIIEIDAASN--NG-------VDEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC Sbjct: 111 VKYAPSIGKYKVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F ++ + + + L+Q+ Sbjct: 171 QRFDFKNIEMDQIEENLKQI 190 >gi|327483765|gb|AEA78172.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae LMA3894-4] Length = 692 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|296500856|ref|YP_003662556.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis BMB171] gi|296321908|gb|ADH04836.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis BMB171] Length = 535 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 19/169 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHAL 89 ++ HA LF G +G GK T+ +A + + APV +PC+ P + ++ Sbjct: 9 KVSHAYLFSGPRGTGKTTIAKVFAKAI----NCEHAPV----AEPCNECPSCLGITQGSI 60 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D L + + N VDEIR IR + + ++V +ID V ++ A NA Sbjct: 61 SDVLEIDAASNN---------GVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNA 111 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LLK+LEEPP V+FIL + I TI SRC +F +S N++ + L Sbjct: 112 LLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERL 160 >gi|254670263|emb|CBA05524.1| DNA polymerase III subunit Tau [Neisseria meningitidis alpha153] Length = 735 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLL 250 >gi|147676398|ref|YP_001210613.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] gi|146272495|dbj|BAF58244.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] Length = 335 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 16/191 (8%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 ++ + + GH I L GR+ HA LF G G+GK T +A +L P Sbjct: 2 LFLREIVGHRQITGALMNAVACGRVAHAYLFAGPAGVGKKTTALAFARALL-------CP 54 Query: 69 VRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 V D C + + H H LY+ +NP I +++IR +++ Sbjct: 55 VPE-GGDACGTCRQCRQVEHRNHPDLYI---VNPSG----ATIKIEQIRELQHRAPYRPY 106 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++ +I + M AAN LLK+LEEPP + IL+S ++L T+ SRC F Sbjct: 107 QGGRKLFLICRAETMTAEAANCLLKTLEEPPHDTVLILVSDQPQSLLPTVLSRCQQCFFK 166 Query: 188 SLSENNLYKAL 198 S+ + L +L Sbjct: 167 SIPLSELSGSL 177 >gi|298207249|ref|YP_003715428.1| putative DNA polymerase III, delta subunit [Croceibacter atlanticus HTCC2559] gi|83849885|gb|EAP87753.1| putative DNA polymerase III, delta subunit [Croceibacter atlanticus HTCC2559] Length = 390 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 36/217 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 + G I+ L+ R+ HA LF G+ G G + YA ++L N + C Sbjct: 13 IIGLPHIKNHLTTTADRRRIPHAQLFVGKSGSGTLPMAIAYAQYILCNNSNGDNLEDNSC 72 Query: 73 N--------PDPCSPF----VKQMASHAL--------HDFL-----------YLSYSLNP 101 N PD F K+++ HA+ DF+ Y + Sbjct: 73 NMRFNNLSHPDLHFAFPVANTKEVSKHAVSNHFMAQWRDFVKDSPYADVFDWYKRLEIEN 132 Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K G+ I VDE + + LSL A G ++ ++I D MN A+N LLK +EEPP+K Sbjct: 133 KQGR----IGVDEAQDVVKKLSLKAYEGGFKCMIIWGADKMNTEASNKLLKLIEEPPEKT 188 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +F+LI+ +I+ TI SRC + F L E ++ K L Sbjct: 189 VFLLITDDEDSIIQTILSRCQVLHFPPLGEGDIAKHL 225 >gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] Length = 569 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 26/232 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + G + I K L + + HA LF G +G GK + A V D Sbjct: 7 REYRPMVFEDVIGQDHIIKTLINQINTNNLSHAYLFCGTRGTGKTSTAKILARAVNCTHD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K CN C V M + L D + + + N +VD+IR +R + Sbjct: 67 GDKP----CNV--CQSCVSIMDASNL-DVIEIDAASNN---------SVDDIRELRDTVK 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T N ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 YTPNKSKYKVYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEPNKIPATILSRCQR 170 Query: 184 IKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAA---YGSVARAIKIL 228 F + + L ++++K + D D +++ A GSV ++ IL Sbjct: 171 FDFKRIGLDTL---VDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSIL 219 >gi|153005311|ref|YP_001379636.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter sp. Fw109-5] gi|152028884|gb|ABS26652.1| DNA polymerase III, delta prime subunit [Anaeromyxobacter sp. Fw109-5] Length = 347 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 19/166 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK--APVRMCNPDPCSPFV--KQMAS 86 G +HHA LF G +G+GKAT A +L + AP D C +++A Sbjct: 23 GALHHAYLFGGPEGVGKAT-----AARLLAQAANCEVPAPAGGLRDDACGACAPCRKIAR 77 Query: 87 HALHDFLYLSYS-LNPKTGKW---------RTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 D L L + K G+W + ++ + L++ G R +++ Sbjct: 78 GVHPDVLLLQEERVMAKAGRWDPKGGRTPSKDIVVDQVRDVVDRRLAMKRFEGRRRFVIL 137 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 DP D MN A NALLK+LEEPP+ +L++ + +L TIRSRCL Sbjct: 138 DPADAMNPQAQNALLKTLEEPPEATTLVLVAASPDALLPTIRSRCL 183 >gi|77166051|ref|YP_344576.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707] gi|254436358|ref|ZP_05049864.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus oceani AFC27] gi|76884365|gb|ABA59046.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Nitrosococcus oceani ATCC 19707] gi|207088048|gb|EDZ65321.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus oceani AFC27] Length = 529 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + + L+ GR+HHA LF G +G+GK TL +L Sbjct: 5 VLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLA-----RILA 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K VR PC A + + +TG VD+ R + Sbjct: 60 KSLNCKEGVRST---PCGKCQNCQAIDGGNFVDLIEVDAASRTG-------VDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G+++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGHYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL ++ +L LE +I + AA GSV A+ +L Sbjct: 170 CLQFNLRRITPKAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLL 221 >gi|298386276|ref|ZP_06995832.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14] gi|298260653|gb|EFI03521.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14] Length = 619 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|153815171|ref|ZP_01967839.1| hypothetical protein RUMTOR_01403 [Ruminococcus torques ATCC 27756] gi|317502370|ref|ZP_07960536.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089971|ref|ZP_08338862.1| hypothetical protein HMPREF1025_02445 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847430|gb|EDK24348.1| hypothetical protein RUMTOR_01403 [Ruminococcus torques ATCC 27756] gi|316896243|gb|EFV18348.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|330403109|gb|EGG82672.1| hypothetical protein HMPREF1025_02445 [Lachnospiraceae bacterium 3_1_46FAA] Length = 331 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 22/217 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + GH++I K++ + + HA + GE+G GK L +A + +N D C Sbjct: 7 VVGHKNIIKYIQNAVTADAVSHAYILNGERGSGKKLLANLFAMSLQCENRDEDGDACGKC 66 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKT---GKWRTVITVDEIRRIRYFLSLTANTG 129 +Q A D + + + P T G RT + D + IR + S Sbjct: 67 RS------CRQAAGGNQPDIIRIMHE-KPNTIGVGDIRTQVNDDIM--IRPYSS------ 111 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++ +I D M+ A NALLK++EEPP+ + +L++ + T+L TIRSRC+ +K ++ Sbjct: 112 KYKIYIIADADMMSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMMKLRNI 171 Query: 190 SENNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + K L EQL++ D K D A G++ +AI Sbjct: 172 KDQLVKKYLMEQLEV--PDYKADVCVAFAQGNMGKAI 206 >gi|148361067|ref|YP_001252274.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila str. Corby] gi|296108398|ref|YP_003620099.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila 2300/99 Alcoy] gi|148282840|gb|ABQ56928.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila str. Corby] gi|295650300|gb|ADG26147.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila 2300/99 Alcoy] Length = 556 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 29/242 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C A+ Y+ K R T D + I+Y Sbjct: 68 ITSEPCLHC--DTCV---------AIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRCL Sbjct: 114 -APTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKILHYDCDKII 236 L + +QL+++ + + DF + AA GS+ A+ +L D+ I Sbjct: 173 FNLKHLPAELIN---QQLQLILQEERLDFEIQALDILAQAARGSMRDALSLL----DQAI 225 Query: 237 SS 238 +S Sbjct: 226 TS 227 >gi|89094005|ref|ZP_01166949.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92] gi|89081679|gb|EAR60907.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92] Length = 632 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 19/207 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G E + K L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPAKFQEMVGQEHVLKALVNALDDDRLHHAYLFTGTRGVGKTSIARLFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ K++A D + + + K V++ R + Sbjct: 65 ETGVSSTPCGVCS------ACKEIAEGRFVDLIEVDAASRTK---------VEDTRELME 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTHGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKI 203 CL +L N+L L Q +I Sbjct: 170 CLQFNLKNLIPERIVNHLTHVLTQEQI 196 >gi|54298738|ref|YP_125107.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Paris] gi|53752523|emb|CAH13955.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Paris] Length = 556 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 29/242 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C A+ Y+ K R T D + I+Y Sbjct: 68 ITSEPCLHC--DTCV---------AIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRCL Sbjct: 114 -APTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKILHYDCDKII 236 L + +QL+++ + + DF + AA GS+ A+ +L D+ I Sbjct: 173 FNLKHLPAELIN---QQLQLILQEERLDFEIQALDILAQAARGSMRDALSLL----DQAI 225 Query: 237 SS 238 +S Sbjct: 226 TS 227 >gi|225017217|ref|ZP_03706409.1| hypothetical protein CLOSTMETH_01143 [Clostridium methylpentosum DSM 5476] gi|224949992|gb|EEG31201.1| hypothetical protein CLOSTMETH_01143 [Clostridium methylpentosum DSM 5476] Length = 327 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 15/188 (7%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCN 73 +G+++ + L+ GR+ HA LF G +G GK TL ++A +L ++P R C Sbjct: 9 YGNKESVQTLTCSLTGGRLSHAYLFYGPKGSGKRTLATQFAQAILCRDPA-----ARPCG 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C+ +K S +H L L K+ + +R+IR + N+G ++V Sbjct: 64 R--CADCLK--VSKLIHPDLLLEGGEGGKSS-----FHAEVVRKIRSEAYIRPNSGEYKV 114 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ V+ M+ AANALLK LEEPP+ V+F+L + I T+ SRC+ + + Sbjct: 115 YILCGVENMSIAAANALLKVLEEPPRHVVFLLTCESKSAIPETLVSRCVPVALYPVEPRE 174 Query: 194 LYKALEQL 201 +A+ +L Sbjct: 175 CAEAVARL 182 >gi|238917931|ref|YP_002931448.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873291|gb|ACR73001.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 561 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 23/219 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + I L + R+ HA LF G +G GK ++ +A V + PV + + Sbjct: 36 GQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAKAV-----NCEHPV---DGN 87 Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P K +A+ + + + + N VD IR+IR + + G ++V Sbjct: 88 PCGECPTCKAIAAGTSMNVIEIDAASNNG---------VDNIRQIREEVQYSPTEGRFKV 138 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC F+ ++ Sbjct: 139 YIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRYDFHRITIET 198 Query: 194 LYKALEQL-KIMGW---DSKRDFVKIAAYGSVARAIKIL 228 + L +L K G D +V AA GS+ A+ +L Sbjct: 199 IAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLL 237 >gi|118602478|ref|YP_903693.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567417|gb|ABL02222.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 529 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 40/286 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G +K L + +HH LF G +G+GK T+ A + Sbjct: 10 RKYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARILAKSINCEQG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P C D C+ V+ ++ D + L + TG VD +R I Sbjct: 70 ISSKP---C--DKCATCVEIDKGQSI-DLIELDAA--SHTG-------VDNMRDILENAQ 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +++ +ID V +++N+ NALLK+LEEPP+ V F+L++ + T+ SRCL Sbjct: 115 YMPSKNRYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQ 174 Query: 184 IKFNSLSENNLYKALEQLK-IMGWD----SKRDFVKIAAY--GSVARAIKILHYD----- 231 L+ + + LEQLK IM + + +IA + GS+ A+ +L Sbjct: 175 FTLQQLTHDEI---LEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISYGK 231 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + I + + L+H + ++ L SQD K DF+ Sbjct: 232 GTVTNADIKAMLGLVH-------HDDIIKLTTHLFSQDAKAVIDFI 270 >gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] Length = 597 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + L SG++ HA LF G +G+GK T +A + QNP Sbjct: 9 RKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + C + C F +Q + Y + L+ + +V+ I+ + Sbjct: 69 TETGEACNEC--ESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQ 173 Query: 183 SIKFNSLS 190 F +S Sbjct: 174 IYDFERMS 181 >gi|330684669|gb|EGG96371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU121] Length = 566 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 8 RMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCTNS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K + D + + + N VDEIR IR + Sbjct: 68 TDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 113 YAPSESEYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D +F+ A+ G + A+ I+ Sbjct: 173 FDFKAIS---LEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIM 221 >gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] Length = 627 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G I K L Q + ++ HA LF G +G GK + F A + + Sbjct: 8 RKWRPKTFEDVVGQGRIMKTLQQAVENDKVAHAYLFSGPRGTGKTSTAKIFAKALNCVHG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C K + S D + + + N ++++IR++R Sbjct: 68 P--TSHPCNEC--DVC----KHITSGESLDVVEIDAASNR---------SIEDIRQLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G+ ++ +ID V + A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFMPTEGHKKIYIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPERIPMTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F ++ +++ K L Sbjct: 171 QRYDFRRITADDIQKRL 187 >gi|70727533|ref|YP_254449.1| DNA polymerase III subunits gamma and tau [Staphylococcus haemolyticus JCSC1435] gi|68448259|dbj|BAE05843.1| DNA polymerase III gamma and tau subunits [Staphylococcus haemolyticus JCSC1435] Length = 571 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L G+ HA +F G +G GK ++ Sbjct: 8 RMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIA----------KV 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA + NP +PC+ K + D + + + N VDEIR I Sbjct: 58 FAKA-INCLNPQDGEPCNECAICKGITQGTNGDVIEIDAASNN---------GVDEIRNI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + ++V +ID V + A NALLK+LEEPP +FIL + I TI Sbjct: 108 RDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167 Query: 179 SRCLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 SR F ++ + L + + + +D++ +F+ A+ G + A+ I+ Sbjct: 168 SRAQRFDFKAIGTEQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIM 221 >gi|34540688|ref|NP_905167.1| DNA polymerase III, delta prime subunit [Porphyromonas gingivalis W83] gi|34397002|gb|AAQ66066.1| DNA polymerase III, delta prime subunit, putative [Porphyromonas gingivalis W83] Length = 416 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 39/298 (13%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA------------ 55 P+Y + + G ED++ +L + + ++ HA LF GE+G G L YA Sbjct: 35 PMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQMPTDTD 94 Query: 56 --GH--------VLQNPD-FSKAPV--RMCNPDPCSPFVKQMASHALHD--FLYLSYSLN 100 GH L +PD F PV +P P +++Q + F + Sbjct: 95 ACGHCPSCVKYDALAHPDLFFVYPVVNASSSPAPSDDYIRQWREMLGSESYFTPADWLEY 154 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 K G + +I E + LS +RV+MI + MN AN LLK +EEPP+ Sbjct: 155 IKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPPEH 214 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AY 218 LF +IS +L TIRSR I L E + +AL + + D ++IA A Sbjct: 215 TLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSR---NNQGNTADIIRIAHLAE 271 Query: 219 GSVARAIKILH---YDCDKIISSYIDLIHIPRQEYALQKMQQIADEL--LSQDQKIAF 271 G+ RA+ + D D + + I + + + KM+ +ADEL L + +I F Sbjct: 272 GNYRRAMDLYRGEWADRDNFVLMGRMMGSIIKGDPS--KMRPVADELAALGRVSQIGF 327 >gi|241895204|ref|ZP_04782500.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC 33313] gi|241871510|gb|EER75261.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC 33313] Length = 588 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + K L +G++ HA LF G +G GK + F A + L Sbjct: 15 RTWRPQKFSDMIGQEIVTKTLKNAIITGQITHAYLFNGPRGTGKTSAAKIFAKAINCLHP 74 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + L D + L + N VDEIR IR Sbjct: 75 VD--------GEPDGTCEICQAADNGTLGDIIELDAASNNG---------VDEIREIRED 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 118 VTYAPTRAKYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRT 177 Query: 182 LSIKFNSLSENNLYKAL 198 F ++ + Y+ + Sbjct: 178 QRFDFKRINAQSAYERM 194 >gi|269120614|ref|YP_003308791.1| DNA polymerase III subunits gamma and tau [Sebaldella termitidis ATCC 33386] gi|268614492|gb|ACZ08860.1| DNA polymerase III, subunits gamma and tau [Sebaldella termitidis ATCC 33386] Length = 496 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + + G I K + ++ HA LF G +G+GK T+ A V L N Sbjct: 7 RKYRPQNFEEIAGQGHIVKAIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAKGVNCLTN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D C +++A+ D + + + N +DEIR ++ Sbjct: 67 -GISDHPCGTC--DNC----REIAAGISMDMVEIDAASNR---------GIDEIRELKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID V + + A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 111 INYQPVNGNKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEVDKIPDTVISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L+ N++ + L+ + Sbjct: 171 QRYDFLPLNMNDIIEMLKMV 190 >gi|972778|gb|AAA93518.1| shows homology to delta subunit of DNA polymerase III [Pseudomonas aeruginosa PAO1] Length = 326 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 17/141 (12%) Query: 44 GIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNP 101 GIGK L +A +L R C C + +A+ D+ + L P Sbjct: 31 GIGKRALAEHWAAQLL---------TRACAAGACGECKACQLLAAGTHPDY----FVLEP 77 Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + + I VD++R + F+ TA G +V++++P + MN NAANALLKSLEEP Sbjct: 78 EEAE--KPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAANALLKSLEEPSGDT 135 Query: 162 LFILISHASPTILSTIRSRCL 182 + +LISH +L TI+SRC+ Sbjct: 136 VLLLISHQPSRLLPTIKSRCV 156 >gi|51891151|ref|YP_073842.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] Length = 570 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E I + L GR+HHA L G +G GK T+ A V NP Sbjct: 8 REYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNCLNP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN C + + AL D + + + N +DEIR +R + Sbjct: 68 QDGEP----CNE--CEACRRITSGEAL-DLIEIDAASN---------RGIDEIRDLRDKV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V + A NALLK+LEEPP VLF+L + + TI SRC Sbjct: 112 NFAPVELKYKVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 + + LS + + L ++ Sbjct: 172 AFDYRRLSADEIVARLREV 190 >gi|121607506|ref|YP_995313.1| DNA polymerase III subunits gamma and tau [Verminephrobacter eiseniae EF01-2] gi|121552146|gb|ABM56295.1| DNA polymerase III, subunits gamma and tau [Verminephrobacter eiseniae EF01-2] Length = 614 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 24/236 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFAEMVGQEHVVQALSNALTRQRLHHAYLFTGTRGVGKTTVARILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGIC------PACSDIDSGRFVDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRCL ++ ++ L Q+ ++ + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPQTVHAHLVQVLAAEQVAAEPQALQLLARAARGSMRDALSL 225 >gi|294155950|ref|YP_003560334.1| DNA polymerase III, gamma and tau subunit [Mycoplasma crocodyli MP145] gi|291600185|gb|ADE19681.1| DNA polymerase III, gamma and tau subunit [Mycoplasma crocodyli MP145] Length = 676 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 22/200 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E I L S ++ HA +F G +G+GK ++ +A + + Sbjct: 8 RKYRPTTFDEVKGQEHIVVTLKNIISSRKIGHAYIFSGPRGVGKTSVARIFANVLNCMHQ 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D +KA C PD C +K D + + + N VDEIR ++ Sbjct: 68 EDLTKA----C-PD-CYRLIKSNI-----DVIEMDAASNN---------GVDEIRDLKEK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L G +++ +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 108 VELLPTYGRYKIYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRS 167 Query: 182 LSIKFNSLSENNLYKALEQL 201 F ++ N L K LE++ Sbjct: 168 QRFNFRRIATNVLSKTLEEV 187 >gi|254468598|ref|ZP_05082004.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13] gi|207087408|gb|EDZ64691.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13] Length = 512 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 38/292 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I + L R+HHA L G +G+GK T+ +A + N Sbjct: 8 RKWRPKNFETIVGQEFIVEALKNSILGDRLHHAYLLSGTRGVGKTTIARIFAKCL--NCH 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C CS V+ S ++ D + L + N + VD +R + + Sbjct: 66 TGSNPTPCC---ECSSCVEIDQSKSI-DVIELDAASNTQ---------VDNMRELLENAN 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +++ +ID V +++++ NA+LK+LEEPP+ V+FIL + I T+ SRCL Sbjct: 113 YQPTSSKYKIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRCLH 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 ++ + + L+ + I D + + A GS+ A+ + D++ Sbjct: 173 FNLMQMTNDEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSL----ADRV---- 224 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 I+ +L+K+ QI I D +I+ +L I + K L Sbjct: 225 ---INYTNGNVSLEKLTQILG--------ITSDGVIDELLTNILDNNKQKVL 265 >gi|261414697|ref|YP_003248380.1| DNA polymerase III, subunits gamma and tau [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371153|gb|ACX73898.1| DNA polymerase III, subunits gamma and tau [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326946|gb|ADL26147.1| putative DNA polymerase III, gamma and tau subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 575 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 93/223 (41%), Gaps = 21/223 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I K L GR+HHA LF G +G+GK T R L Sbjct: 8 RKWRPQSFSDMVGQEHIAKTLENAIQGGRLHHAFLFTGTRGVGKTTSA-RILARTLNCK- 65 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P+ C D C K +A D + + N R VI R++Y Sbjct: 66 -GSDPLHPCGECDSC----KDIAGGNPMDVYEIDAASNTSVDNIRDVI-----ERVQYPP 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +++ +ID V ++ A NALLK+LEEPP V+FI + + TI SR Sbjct: 116 VI----GKYKIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQ 171 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSV 221 F L+ + + L EQ I D D A GS+ Sbjct: 172 RFDFKRLTVDQIRSRLRYICEQEGIKATDEALDIFAEKADGSM 214 >gi|332177093|gb|AEE12783.1| putative DNA polymerase III delta prime subunit [Porphyromonas asaccharolytica DSM 20707] Length = 362 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 27/215 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPD--------- 63 ++G+ +++ SG+M HA+L E ++G L + +A ++ Q+P Sbjct: 6 IYGYRALKQQFVHLTRSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSPTDEDSCGECA 65 Query: 64 FSKAPVRMCNPDP--CSPFVK----QMASHALHDFLYLSYSLNP-----------KTGKW 106 K +PD P +K + + D + +P + G Sbjct: 66 SCKKVAASAHPDVIFVYPVIKAAQDETPTERYFDEWRMLLERSPYITEQDWLEVLEAGNS 125 Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + VI V+EI + LS+T G WR I+I + MN AAN LLKSLEEPP + LFIL+ Sbjct: 126 QPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEPPAETLFILV 185 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S S +L TI SR + ++E + +AL L Sbjct: 186 SAHSDRLLDTILSRVQRFELPPMTEEEMREALTAL 220 >gi|239637703|ref|ZP_04678673.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri L37603] gi|239596728|gb|EEQ79255.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri L37603] Length = 566 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 8 RMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCTNS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K + D + + + N VDEIR IR + Sbjct: 68 TDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 113 YAPSESEYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D +F+ A+ G + A+ I+ Sbjct: 173 FDFKAIS---LEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIM 221 >gi|188994879|ref|YP_001929131.1| putative DNA polymerase III delta prime subunit [Porphyromonas gingivalis ATCC 33277] gi|188594559|dbj|BAG33534.1| putative DNA polymerase III delta prime subunit [Porphyromonas gingivalis ATCC 33277] Length = 416 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 132/300 (44%), Gaps = 43/300 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA------------ 55 P+Y + + G ED++ +L + + ++ HA LF GE+G G L YA Sbjct: 35 PMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQTPTDTD 94 Query: 56 --GH--------VLQNPD-FSKAPV--RMCNPDPCSPFVKQ----MASHALHDFLYLSYS 98 GH L +PD F PV +P P +++Q + S + F + Sbjct: 95 ACGHCPSCLKYDALAHPDLFFVYPVVNASSSPTPSDDYIRQWREMLGSESY--FTPADWL 152 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 K G + +I E + LS +RV+MI + MN AN LLK +EEPP Sbjct: 153 EYIKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPP 212 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-- 216 + LF +IS +L TIRSR I L E + +AL + + D ++IA Sbjct: 213 EHTLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSR---NNKGNTADIIRIAHL 269 Query: 217 AYGSVARAIKILH---YDCDKIISSYIDLIHIPRQEYALQKMQQIADEL--LSQDQKIAF 271 A G+ RA+ + D D + + I + + + KM+ +ADEL L + +I F Sbjct: 270 AEGNYRRAMDLYRGEWADRDNFVLMGRMMGSIIKGDPS--KMRPVADELAALGRVSQIGF 327 >gi|304387172|ref|ZP_07369415.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis ATCC 13091] gi|304338739|gb|EFM04850.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis ATCC 13091] Length = 738 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTSQQVADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLL 250 >gi|164688847|ref|ZP_02212875.1| hypothetical protein CLOBAR_02495 [Clostridium bartlettii DSM 16795] gi|164602051|gb|EDQ95516.1| hypothetical protein CLOBAR_02495 [Clostridium bartlettii DSM 16795] Length = 311 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y +++ G +K+LS S + HA +FEG G+GK T+ A +L+ + +P Sbjct: 1 MYFEKIRGQRFAKKYLSNSIKSNMISHAYMFEGPSGVGKNTMARDLATTLLEMENLFNSP 60 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 D++ ++ N I + +IR+++ + L Sbjct: 61 ----------------------DYIEITPDGNS--------IKIAQIRKLQSDI-LVKPY 89 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++ +ID M A NALLK+LEEPP+ + ILI++ ++L TI+SRC IKF Sbjct: 90 KSYKIYVIDEAQKMTVEAQNALLKTLEEPPKYAIIILITNNKESLLDTIKSRCEIIKFTP 149 Query: 189 LSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 + L + + L G D R + + GS+ +AI++ Sbjct: 150 IP---LVEVADYLTQTGVDKNRASLLANFSRGSMQKAIEL 186 >gi|78224612|ref|YP_386359.1| DNA polymerase III subunits gamma/tau [Geobacter metallireducens GS-15] gi|78195867|gb|ABB33634.1| DNA polymerase III, tau subunit [Geobacter metallireducens GS-15] Length = 582 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P ++ + D L + + N TG VD+IR +R Sbjct: 65 EQGMSPEPCNVC------PACTEITAGTAVDVLEIDGASN--TG-------VDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 C F + + L +Q I D+ V GS+ ++ +L Sbjct: 170 CQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVL 221 >gi|314935127|ref|ZP_07842480.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis subsp. hominis C80] gi|313656462|gb|EFS20201.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis subsp. hominis C80] Length = 569 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 35/237 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L G+ HA +F G +G GK ++ Sbjct: 8 RMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIA----------KV 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA + NP +PC+ K + D + + + N VDEIR I Sbjct: 58 FAKA-INCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNG---------VDEIRNI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + ++V +ID V + A NALLK+LEEPP +FIL + I TI Sbjct: 108 RDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD-------FVKIAAYGSVARAIKIL 228 SR F ++S + +E+L+ + + D F+ A+ G + A+ I+ Sbjct: 168 SRAQRFDFKAISTEQI---VERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIM 221 >gi|307720523|ref|YP_003891663.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM 16294] gi|306978616|gb|ADN08651.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM 16294] Length = 563 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 18/219 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E I + LS S R+ HA LF G +G GK + +A ++ Sbjct: 7 VLARKYRPSNFDELIGQETIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S P D CS V MA H D + + + + K +D+IR + Sbjct: 67 EEGMSHQPC-----DKCSNCV--MAKENRHMDIIEMDGASSRK---------IDDIRDLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ +ID V + + A NALLK+LEEPP+ V F+L + + +TI S Sbjct: 111 EQTKYKPAIARYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFVLATTDPLKLPATILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAA 217 R +F S++ N + L L++ G + + D ++I A Sbjct: 171 RTQHFRFKSIATNKIVDHLAHILQLEGIEYENDALEILA 209 >gi|228474144|ref|ZP_04058881.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119] gi|228271839|gb|EEK13176.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119] Length = 569 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 35/237 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + K L G+ HA +F G +G GK ++ Sbjct: 8 RMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIA----------KV 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA + NP +PC+ K + D + + + N VDEIR I Sbjct: 58 FAKA-INCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNG---------VDEIRNI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + ++V +ID V + A NALLK+LEEPP +FIL + I TI Sbjct: 108 RDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD-------FVKIAAYGSVARAIKIL 228 SR F ++S + +E+L+ + + D F+ A+ G + A+ I+ Sbjct: 168 SRAQRFDFKAISTEQI---VERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIM 221 >gi|302878404|ref|YP_003846968.1| DNA polymerase III, subunits gamma and tau [Gallionella capsiferriformans ES-2] gi|302581193|gb|ADL55204.1| DNA polymerase III, subunits gamma and tau [Gallionella capsiferriformans ES-2] Length = 571 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L R+HHA LF G +G+GK T+ +A + Sbjct: 6 VLARKWRPKNFAQLAGQEHVVRALGNALSQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ C+ ++ S D + L + N + VD +R + Sbjct: 66 LTGITATPCGVCSA--CT----EIDSGRFVDLIELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 SALYAPTSARFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL L +L L + I + + V AA GS+ A+ + Sbjct: 171 CLQFNLKQLPPALIVAHLQHVLTEEHIEFEPAALNLVARAAQGSMRDALSL 221 >gi|239623040|ref|ZP_04666071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522407|gb|EEQ62273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 549 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + + G + I + L S R+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C P K + S + + + + + N V+ IR IR + Sbjct: 68 VDGSPCNEC------PTCKAIQSGSSMNVVEIDAASNNG---------VENIRDIRDQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L +L I D ++ AA GS+ + +L Sbjct: 173 YDFKRISLETIGDRLRELTQAEHIEVEDRALMYIAKAADGSLRDGLSLL 221 >gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862775|gb|EDO56206.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 604 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 SPTADGEACNQCESCTAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172 >gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM 20601] gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM 20601] Length = 580 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 26/265 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G + K L ++ HA LF G +G GK + +A + Sbjct: 8 RVFRPQAFQDIVGQSHVTKTLQNAIVQNKISHAYLFSGPRGTGKTSAAKVFAKAINCERS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C K + + D L + + N V+EIR IR + Sbjct: 68 TDGEPCNEC--DTC----KGITDGSNPDVLEIDAASNN---------GVEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTNSKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQR 172 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + L+ I D + AA G + A+ +L D++IS Sbjct: 173 FDFKRITTQDITAHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLL----DQVISFG 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLS 264 + + + E AL+ +A LL+ Sbjct: 229 SEEVGV---EDALEITGSVAQNLLT 250 >gi|24373576|ref|NP_717619.1| DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] gi|24347898|gb|AAN55063.1|AE015643_10 DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] Length = 1002 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 ETGVTASPCGVCG------SCVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHI 190 >gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS 21A-A] gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS 21A-A] Length = 590 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAYLFCGPRGVGKTTTARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPVSDGEACNECESCKAFNEGRS--------YNIFELDAASNN-----SVENIKELMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP +++FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVFIIDEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F +S ++ K LE++ Sbjct: 174 IYDFERMSVADIIKHLEKV 192 >gi|229115998|ref|ZP_04245393.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] gi|228667492|gb|EEL22939.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] Length = 541 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 14 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 69 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 70 -CLAP--LSNGEPCQKCANCGDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 118 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 177 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +E+LK + D Sbjct: 178 QQFEFRNIP---LQAMIERLKFISHD 200 >gi|302384618|ref|YP_003820440.1| DNA polymerase III, subunits gamma and tau [Clostridium saccharolyticum WM1] gi|302195246|gb|ADL02817.1| DNA polymerase III, subunits gamma and tau [Clostridium saccharolyticum WM1] Length = 531 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L +GR+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPPSFSDVKGQDHIVQTLKNQIVAGRIGHAYLFCGTRGTGKTSIAKIFAKAVNCECP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ A + + + + N V+ IR IR + Sbjct: 68 EDGSPCGECRT------CKNIAAGASLNVVEIDAASNNG---------VENIREIRDEVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 113 YPPTEGKYRVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVLSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + L++L I D ++ +A G++ A+ +L Sbjct: 173 YDFKRITVETIVEHLKELTAAEHIQVEDRALTYIAKSADGALRDALSLL 221 >gi|167755136|ref|ZP_02427263.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402] gi|167705186|gb|EDS19765.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402] Length = 640 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 141/329 (42%), Gaps = 30/329 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P + G E I L R+ HA LF G +G GK T+ A + N Sbjct: 8 RSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAKAL--NCT 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C P K + D + + + N VDE+R + + Sbjct: 66 GENPPCDQC------PNCKAITVGEHPDVIEIDAASNN---------GVDEVRDLIDKVK 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V M+ A NALLK+LEEPP ++F+L + IL TI SRC Sbjct: 111 YAPINGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQR 170 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 F + +++ LE ++ ++K+ +++A SVA+ + D I+ + Sbjct: 171 FDFKKVENHDIISRLEY--VLKSENKK--YELSALESVAKLAEGGMRDALSILEQCLAY- 225 Query: 244 HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQ 303 E ++ + + LLS D KI+ F+ + + K+I +L L + I + Sbjct: 226 ---NNELTVESVNMVYG-LLSMDNKIS--FIKQLLSKDI--KGVLTSLDNMLSGSIDIKR 277 Query: 304 IYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + F LV + +Y + I +L++ Sbjct: 278 LTFDLVDVLKDIIIYKNTQDVSILFVLTQ 306 >gi|254248057|ref|ZP_04941378.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia PC184] gi|124872833|gb|EAY64549.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia PC184] Length = 346 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|15893592|ref|NP_346941.1| DNA polymerase III subunit delta' [Clostridium acetobutylicum ATCC 824] gi|15023142|gb|AAK78281.1|AE007544_10 DNA-polymerase III, gamma subunit [Clostridium acetobutylicum ATCC 824] gi|325507712|gb|ADZ19348.1| DNA polymerase III subunit delta [Clostridium acetobutylicum EA 2018] Length = 314 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 28/185 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + +FGHE + K + + R HA++ GE GIGK+ + A +L Sbjct: 4 ENIFGHEAVRKQFDELVKNKRFPHAIMLCGEDGIGKSIVAKEIAAKLL------------ 51 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N + + L+D + I+VD++R+I ++ G Sbjct: 52 -NKTEIKEYADLIEWKILND---------------KKSISVDQVRKIIEEVNKKPYEGNN 95 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++ +D M NA LK++EEPP V IL+ + +L T+RSRC K N L E Sbjct: 96 KLIVVHDMDYMTIQGQNAFLKTIEEPPLGVYIILLCQSQGRVLDTVRSRCQIYKLNRLDE 155 Query: 192 NNLYK 196 + + K Sbjct: 156 HEMRK 160 >gi|328474619|gb|EGF45424.1| DNA polymerase III subunit delta' [Vibrio parahaemolyticus 10329] Length = 320 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 13/152 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+ ALL + +G+ L + H L ++S C+ C K + L Sbjct: 21 SDRIPGALLLQSNKGLAVEKL-VEFFSHALLCQNYSSEACGFCHS--CQ-LTKSQSHPDL 76 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + K GK ITVD+IR ++ +R+ +I+P D MN +A+NA Sbjct: 77 H------WIRPEKEGK---AITVDQIRACNRLAHESSQLNGYRLFVIEPSDAMNESASNA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEP +K LF+L++H +L TIRSRC Sbjct: 128 LLKTLEEPGEKCLFLLVTHNQERLLPTIRSRC 159 >gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium sp. YIT 12067] gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium sp. YIT 12067] Length = 608 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 23/221 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 L G + ++ L SG++ HA LF G +G GK ++ A + Q P + P Sbjct: 18 LVGQKAVKTTLKNALASGKIAHAYLFSGPRGTGKTSMARILAKALNCEQGP--TAEPCGQ 75 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C C V+ + D + + + N +VD IR +R ++ T + Sbjct: 76 CG--NCQRIVQGTS----LDVIEIDAASN---------TSVDNIRDLREQVAFTPAESRY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEPP +FIL + + +TI+SRC +F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRCQRFEFRRVTV 180 Query: 192 NNLYKALEQLKI-MGWDSKRD---FVKIAAYGSVARAIKIL 228 + + + L + G ++ D + I A G + A+ +L Sbjct: 181 DEIAEHLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLL 221 >gi|323486484|ref|ZP_08091807.1| hypothetical protein HMPREF9474_03558 [Clostridium symbiosum WAL-14163] gi|323400187|gb|EGA92562.1| hypothetical protein HMPREF9474_03558 [Clostridium symbiosum WAL-14163] Length = 329 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 16/215 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ ++ L + ++ HA + GE+G+G+ T+ +A +L K P C+ Sbjct: 7 IIGHDMVKDHLQKAIEYHKVSHAYILSGEEGMGRKTIARAFAMTLLCEKS-DKEPCMQCH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ+ S D +++++ P + I VD+IR +I + + + ++ Sbjct: 66 S------CKQIMSGNHPDVIWVTHE-KPAS------IGVDDIRVQINDTIMVKPYSSGYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + M+D + M A NALLK++EEPP + IL++ L TI SRC+ +K L + Sbjct: 113 IYMVDEAEKMTVQAQNALLKTIEEPPAYAVIILMTTNQEVFLPTILSRCIQLKLRPLKDY 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L ++ + +SK D A G++ +AI + Sbjct: 173 VVSGYLSEMMEVP-ESKADIYAAFARGNLGKAIHL 206 >gi|212634550|ref|YP_002311075.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] gi|212556034|gb|ACJ28488.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] Length = 946 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPAKFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCS------ACVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + L Sbjct: 170 CLQFNLKSLTQDEISDQL 187 >gi|317478676|ref|ZP_07937831.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|316905187|gb|EFV26986.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 604 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L +G++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 SPTADGEACNQCESCTSFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172 >gi|218663711|ref|ZP_03519641.1| DNA polymerase III subunit delta' [Rhizobium etli IE4771] Length = 140 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 AL+ L I G V AA GSV A+K+L+Y +II++Y +++ A + M Sbjct: 3 ALDHLGISGEGGA---VLAAAKGSVGEALKLLNYGGGEIIAAYHEVLS-AEGPAARKAMH 58 Query: 257 QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 ++AD L ++ FDF + + +I A+ AA GQ+ A+++A++Y + +R+ Sbjct: 59 RLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGEGQIAAAERLARLYSEITERLTISD 118 Query: 317 MYNLDRRQMIFHLLSKARE 335 YNLDR+Q I +LS ++ Sbjct: 119 AYNLDRKQTIISILSDIKQ 137 >gi|153001132|ref|YP_001366813.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS185] gi|151365750|gb|ABS08750.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS185] Length = 1137 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL+++ + L + Sbjct: 197 CLQFNLKSLTQSEIGTQLNHI 217 >gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM 16795] gi|164604029|gb|EDQ97494.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM 16795] Length = 551 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 132/286 (46%), Gaps = 30/286 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L + + HA LF G +G GK + ++ V Sbjct: 10 RVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAYLFCGTRGTGKTSTAKIFSRAV----- 64 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + N +PC+ +++ D + + + N +VD+IR +R Sbjct: 65 ---NCTNLHNDEPCNECENCREILEDKTMDVVEIDAASNN---------SVDDIRELREN 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 113 VKYSPAKAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F ++ ++ + E+ I + + + + G++ A+ IL ++ + Sbjct: 173 QRFDFKRVTVKDISSRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISFEGN 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 KI SY D+I + ++++ +A+ ++ +D + + L +FI+ Sbjct: 233 KI--SYNDVIELLGS-VNIEQLFDLAESIIKEDTRKSLQILNDFII 275 >gi|294789047|ref|ZP_06754287.1| DNA polymerase III, delta' subunit [Simonsiella muelleri ATCC 29453] gi|294483149|gb|EFG30836.1| DNA polymerase III, delta' subunit [Simonsiella muelleri ATCC 29453] Length = 328 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 20/162 (12%) Query: 30 SGRMHH---ALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMA 85 + HH A L G+ GK+ A +L ++P P C P Q Sbjct: 14 TTHWHHQPNAWLLLGKSNTGKSAFALHLAQSLLCESPQPHHDPCGTC---PSCHLFNQ-G 69 Query: 86 SHALHDFLYLSYSLNPKTGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +H DF YSL P+ + T I +D +R I L ++ G RV++I+P Sbjct: 70 THP--DF----YSLTPEQPEEGTTSRKLLNIKIDAVRAILEPLMQSSVRGGRRVVLINPA 123 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N AANALLK LEEPP+ V+F+L++H +L TI+SRC Sbjct: 124 ESLNTQAANALLKILEEPPEAVIFLLVAHNRDRVLPTIKSRC 165 >gi|256822248|ref|YP_003146211.1| DNA polymerase III subunits gamma and tau [Kangiella koreensis DSM 16069] gi|256795787|gb|ACV26443.1| DNA polymerase III, subunits gamma and tau [Kangiella koreensis DSM 16069] Length = 773 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 18/232 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+HHA LF G +G+GK T+ R L Sbjct: 5 VLARKWRPKNFDELQGQEHVSRALVNAIESGRLHHAYLFTGTRGVGKTTIA-RILSKCL- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + + + C C V ++ D + + + K VD+ R + Sbjct: 63 NCETNGLTSKPCGE--CGSCV-EIDEGRFVDLIEVDAASRTK---------VDDTRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V+F+L + + T+ SR Sbjct: 111 NVQYKPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLSR 170 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL + E + K L+Q I + + +A GS+ A+ +L Sbjct: 171 CLQFHLKHMEEQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLL 222 >gi|330996185|ref|ZP_08320075.1| DNA polymerase III, subunit gamma and tau [Paraprevotella xylaniphila YIT 11841] gi|329573689|gb|EGG55280.1| DNA polymerase III, subunit gamma and tau [Paraprevotella xylaniphila YIT 11841] Length = 604 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E + L +G++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLHP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + C + C F +Q S +H+ S + +V+EIR + + Sbjct: 69 SGNGEACDEC--ESCKAFNEQR-SLNIHELDAASNN------------SVEEIRALIEKV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN +S Sbjct: 174 VYDFNRMS 181 >gi|293374915|ref|ZP_06621213.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis PC909] gi|292646464|gb|EFF64476.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis PC909] Length = 605 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 121/285 (42%), Gaps = 30/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA P + G I + + R+ HA LF G +G GK ++ A V Sbjct: 8 RAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAV----- 62 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V +PC+ V + + + D + + N VDEIR IR Sbjct: 63 ---NCVNYPTDEPCNECVNCTTITNGSNSDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPTMGRYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIA---AYGSVARAI----KILHYDCD 233 F +S + + L E L + + D V++ A G + A+ +++ Y D Sbjct: 171 QRFDFKQISTKEITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYSYD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 KI+ ID +H A ++ QI + D D + E I Sbjct: 231 KIL---IDDVHALSGTIANHQLLQIIRGIKDLDFSTIIDLIQEMI 272 >gi|20806577|ref|NP_621748.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter tengcongensis MB4] gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter tengcongensis MB4] Length = 518 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L GR+ HA LF G +G GK ++ Sbjct: 7 RKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA V NP +PC+ + + + D L + + N +V+++R + Sbjct: 57 FAKA-VNCLNPKDGEPCNSCEVCQAINTGTTMDVLEIDAASNN---------SVNDVREL 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI Sbjct: 107 RESVIYSPSLTKYKVYIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVK-IAAY--GSVARAIKILH 229 SRC F + + + LE++ + G +++ ++ IA Y GS+ AI +L Sbjct: 167 SRCQRFDFKKIPTKQIAQNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLE 221 >gi|329903603|ref|ZP_08273561.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] gi|327548263|gb|EGF32958.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] Length = 287 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 22/207 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G E + + LS +GR+HHA LF G +G+GK TL F Sbjct: 12 VLARKYRPRSFDTLVGQEHVVRALSHALDTGRLHHAYLFTGTRGVGKTTLSRILAKAFNC 71 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 G + N + P +C CS + + D++ L + N V+E Sbjct: 72 IG-IDGNGGITATPCGVCAA--CS----AIDAGRFVDYIELDAASNRG---------VEE 115 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ + ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 116 MAQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 175 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL + ++ L+ + Sbjct: 176 VTVLSRCLQFNLKQMPPGHIVAHLDDI 202 >gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] Length = 621 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|319426701|gb|ADV54775.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens 200] Length = 984 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCG------SCVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + L Sbjct: 197 CLQFNLKSLTQDEIGTQL 214 >gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A] Length = 621 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|54295584|ref|YP_127999.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Lens] gi|53755416|emb|CAH16912.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Lens] gi|307611624|emb|CBX01309.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila 130b] Length = 556 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 19/223 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C A+ Y+ K R T D + I+Y Sbjct: 68 ITSEPCLHC--DTCI---------AIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRCL Sbjct: 114 -APTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 L + +QL+++ + + DF +I A +ARA + Sbjct: 173 FNLKHLPAELIN---QQLQLILQEERLDF-EIQALDILARAAR 211 >gi|294141554|ref|YP_003557532.1| DNA polymerase III subunits gamma and tau [Shewanella violacea DSS12] gi|293328023|dbj|BAJ02754.1| DNA polymerase III, gamma and tau subunits [Shewanella violacea DSS12] Length = 943 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGITASPCGQCS------SCVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + L Sbjct: 170 CLQFNLKSLTQDEISSQL 187 >gi|237712928|ref|ZP_04543409.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|159906347|gb|ABX10865.1| DNA polymerase III gamma and tau subunits [Rhodomonas sp. CCMP1170] Length = 370 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 48/285 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E + L + A LF G+ G GK TL A + Sbjct: 12 YRPQNFNNMIGQEKATQHLKSSIEEKKXAFAYLFAGQHGSGKTTLARITAKAI------- 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 R PC+ + H H F + TG V++IR I + T Sbjct: 65 --NCRSLKTVPCNTCSNCINIHLGHSFDFYEIDAAKNTG-------VEKIREIMENIQFT 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++V +ID ++RNA N+LLK+LE PP K +FIL + A I +TI SRC ++ Sbjct: 116 PLMNEYKVCIIDEAHMLSRNAFNSLLKTLESPPAKTVFILSTTALGKIPNTIISRCQTVY 175 Query: 186 FNSLSENNLYKAL------EQLKIM--GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + +L A+ E+LKI G S D ++ GS A+ I Sbjct: 176 FQPIQDQDLAIAISKVVHNEKLKITNKGLRSLLDIIQ----GSFRDALNI---------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 ID+ + +Q+ I LS +A F++E ++ I Sbjct: 222 --IDIFSVKKQD--------ITAHSLSNQYLMAPSFIVELLVDNI 256 >gi|325142631|gb|EGC65022.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis 961-5945] Length = 709 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL 221 >gi|302035663|ref|YP_003795985.1| DNA polymerase III subunit gamma/tau [Candidatus Nitrospira defluvii] gi|300603727|emb|CBK40058.1| DNA polymerase III, gamma and tau subunits [Candidatus Nitrospira defluvii] Length = 625 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + L + R+ HA LF G +G+GK T+ A + Q Sbjct: 8 RKYRPGTFDDVIGQSHVVQTLMNSIATKRIAHAFLFSGTRGVGKTTVARILAKALNCEQG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C +++ D + + + N +VD++R IR Sbjct: 68 P--TGTPCNTCA------NCREITQGTSVDVVEIDGASN---------TSVDDVREIREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G +RV +ID V ++ +A NALLK+LEEPP V+FI + I +TI SRC Sbjct: 111 VKFTPFRGQYRVYIIDEVHMLSNSAFNALLKTLEEPPSHVVFIFATTEIHKIPATILSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F +S+ + + L Sbjct: 171 QHYNFRRISKAEIVQRL 187 >gi|229829478|ref|ZP_04455547.1| hypothetical protein GCWU000342_01568 [Shuttleworthia satelles DSM 14600] gi|229791909|gb|EEP28023.1| hypothetical protein GCWU000342_01568 [Shuttleworthia satelles DSM 14600] Length = 330 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E+++ L + ++ HA + GE+G GK L +A +L Sbjct: 6 IIGQEELKGHLQNALQNQKVSHAYIISGEEGSGKRMLAEAFAQTLLCEEK---------G 56 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 D C +Q SH D +YL++ P T I+VD+IR +I + + Sbjct: 57 ADACGHCHHCRQTMSHNQPDIIYLTHE-KPAT------ISVDDIRSQINSDIVIRPYNSD 109 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V ++D + MN A NALLK++EEPP + +L++ + L TIRSRC+ Sbjct: 110 YKVYIVDEAEKMNEQAQNALLKTIEEPPSYAVILLLTTNAQAFLPTIRSRCI 161 >gi|32474299|ref|NP_867293.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] gi|32444837|emb|CAD74839.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] Length = 676 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G + + + L + R+ HA LF G +G+GK + +A L Sbjct: 39 VVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFA-KALN 97 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD A NPD S + + S D + + + N +DEIR +R Sbjct: 98 HPDGPTA-----NPDSESDVAQAIDSGEDVDVIEIDGASN---------RGIDEIRSLRA 143 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 144 NVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 203 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + + + L ++ Sbjct: 204 CQRFDFAPVESDKIVQRLREI 224 >gi|315652703|ref|ZP_07905677.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315484905|gb|EFU75313.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 324 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 24/192 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E + L + + HA + G++GIGK + +A ++ C Sbjct: 5 ILGNEKVRNHLKESILKKTVSHAYILAGDKGIGKQKIAREFAMRLI------------CE 52 Query: 74 PD--PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANT 128 D C P +Q +++ DF Y+ S N ++ I +D+IR I +++ Sbjct: 53 RDNIGCGHCPACRQFLANSYPDFFYMD-SENKES------IGIDKIRENIVSDVAVRPYY 105 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++ +ID D M A NALLK++EEPP+ V+ +L+ +L TIRSRC+ + + Sbjct: 106 GKYKIYVIDEADKMTGVAQNALLKTIEEPPEYVVILLLVRNMSLLLETIRSRCIKLLLSP 165 Query: 189 LSENNLYKALEQ 200 +S + + K L + Sbjct: 166 VSNDRIKKWLTE 177 >gi|148993679|ref|ZP_01823126.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP9-BS68] gi|168490300|ref|ZP_02714499.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae SP195] gi|303255298|ref|ZP_07341369.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS455] gi|303260384|ref|ZP_07346353.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP-BS293] gi|303262741|ref|ZP_07348679.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS292] gi|303265030|ref|ZP_07350944.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS397] gi|303267140|ref|ZP_07353009.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS457] gi|303269364|ref|ZP_07355135.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS458] gi|147927759|gb|EDK78782.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP9-BS68] gi|183571341|gb|EDT91869.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae SP195] gi|301801689|emb|CBW34395.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae INV200] gi|302597767|gb|EFL64842.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS455] gi|302636063|gb|EFL66560.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS292] gi|302638419|gb|EFL68885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP-BS293] gi|302641082|gb|EFL71458.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS458] gi|302643348|gb|EFL73626.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS457] gi|302645390|gb|EFL75623.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS397] gi|332073196|gb|EGI83675.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA17570] Length = 551 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + T + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYTPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|327539583|gb|EGF26192.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica WH47] Length = 651 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G + + + L + R+ HA LF G +G+GK + +A L Sbjct: 14 VVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFA-KALN 72 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD A NPD S + + S D + + + N +DEIR +R Sbjct: 73 HPDGPTA-----NPDNESDVAQAIDSGEDVDVIEIDGASN---------RGIDEIRSLRA 118 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 119 NVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 178 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + + + L ++ Sbjct: 179 CQRFDFAPVESDKIVQRLREI 199 >gi|168484747|ref|ZP_02709692.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1873-00] gi|172042059|gb|EDT50105.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1873-00] Length = 551 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + T + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYTPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|325663769|ref|ZP_08152173.1| hypothetical protein HMPREF0490_02914 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470262|gb|EGC73495.1| hypothetical protein HMPREF0490_02914 [Lachnospiraceae bacterium 4_1_37FAA] Length = 329 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 18/214 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH +I +++ ++ HA + G++G GK L +A LQ P C Sbjct: 7 VIGHNEIIEYIQNAVKMDKVSHAYIMNGQKGSGKKMLADLFA-RTLQCEGEGVEPCGECR 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ + D + +++ P + I+VD+IR ++ + + + ++ Sbjct: 66 S------CKQADGNNQPDIIKVTHE-KPNS------ISVDDIRTQVNNDILIKPYSSKYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I D M A NALLK++EEPP + L++ + +L TIRSRC+ +K ++ + Sbjct: 113 IYIIPEADKMTVQAQNALLKTIEEPPSYAVIFLLTENAEVLLPTIRSRCVMLKLRNIKDK 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L E+++I D K D A G++ RAI Sbjct: 173 LIKKYLMEEMEI--PDYKADICTAFAQGNMGRAI 204 >gi|322834005|ref|YP_004214032.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602] gi|321169206|gb|ADW74905.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602] Length = 649 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + K LE + Sbjct: 170 CLQFHLKALDAEQIRKQLEHV 190 >gi|210617099|ref|ZP_03291409.1| hypothetical protein CLONEX_03631 [Clostridium nexile DSM 1787] gi|210149488|gb|EEA80497.1| hypothetical protein CLONEX_03631 [Clostridium nexile DSM 1787] Length = 329 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 18/214 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+DI +++ ++ HA + G +G GK L +A LQ + P C Sbjct: 7 VVGHKDIIQYIQNAVEQDKVSHAYILNGAKGSGKKMLAKLFA-MTLQCENSQLEPCGECR 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 +Q S D + + + K G I+VD+IR ++ + + + ++ Sbjct: 66 S------CRQADSGNQPDIITIQHE---KPGS----ISVDDIREQLNGDIMIKPYSNRYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I D + A NALLK++EEPP+ + L++ + ++L TIRSRC+ +K ++ + Sbjct: 113 IYIIPEADLLTVQAQNALLKTIEEPPEYAIIFLLTENADSLLPTIRSRCVMLKLRNIKDT 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L EQL I D + D A G++ RAI Sbjct: 173 LIKKYLMEQLHI--PDYQADICAAFAQGNMGRAI 204 >gi|163814836|ref|ZP_02206224.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759] gi|158449775|gb|EDP26770.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759] Length = 567 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + R+ HA LF G +G GK ++ +A Sbjct: 25 RKWRPDTFDEVKGQDHIVTTLRNQIKNDRLGHAFLFCGTRGTGKTSIAKIFA-------- 76 Query: 64 FSKAPVRMCN---PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + CN P SP + + A+ D SLN + VD IR+IR Sbjct: 77 ------KACNCEHPVDGSPCNECASCRAIAD----GSSLNVIEIDAASNNGVDNIRQIRE 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + S I TI SR Sbjct: 127 EVAYPPTEGKYKVYIIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSR 186 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKR---DFVKIAAYGSVARAIKIL 228 C F + + + L L G ++ R D+V + GS+ A+ IL Sbjct: 187 CQKYDFRRIPVDVIADRLADLMDREGLEADRKAIDYVAKSGDGSMRDALSIL 238 >gi|160945467|ref|ZP_02092693.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii M21/2] gi|158443198|gb|EDP20203.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii M21/2] Length = 628 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 23/200 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G I L +GR+ HA LF G +G GK T F A + L Sbjct: 7 RKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCLH- 65 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PV N DPC K + + +L D + + + N VD+IR +R Sbjct: 66 ------PV---NGDPCGECEICKGIDNGSLLDVVEMDAASN---------NGVDDIRDLR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI S Sbjct: 108 DETAYTPSACQYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILS 167 Query: 180 RCLSIKFNSLSENNLYKALE 199 RC F + ++ + +E Sbjct: 168 RCQRYDFTRIGPEDIARRVE 187 >gi|325298548|ref|YP_004258465.1| DNA polymerase III, subunits gamma and tau [Bacteroides salanitronis DSM 18170] gi|324318101|gb|ADY35992.1| DNA polymerase III, subunits gamma and tau [Bacteroides salanitronis DSM 18170] Length = 594 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAYLFCGPRGVGKTTCARIFAKTI--NCL 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN + C F +Q S+ +H+ S + +V++IR + + Sbjct: 67 HPTSEGEACNACESCVAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 FN +S N++ + LE + Sbjct: 174 IYDFNRISVNDMVEHLESV 192 >gi|172056062|ref|YP_001812522.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sibiricum 255-15] gi|171988583|gb|ACB59505.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sibiricum 255-15] Length = 561 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 19/180 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + + RM HA LF G +G GK +L A + + Sbjct: 8 RVYRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAKAI----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +APV +PC+ P + + + D + + N VDEIR IR Sbjct: 64 CEQAPVN----EPCNECPTCRAITEGSSPDVFEIDAASNNG---------VDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 111 VKYPPSEAAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRC 170 >gi|292493123|ref|YP_003528562.1| DNA-directed DNA polymerase [Nitrosococcus halophilus Nc4] gi|291581718|gb|ADE16175.1| DNA-directed DNA polymerase [Nitrosococcus halophilus Nc4] Length = 322 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 21/161 (13%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPDPCSPFVKQMAS 86 RM HALL G G+GK +A +++Q +P C+ C +++ S Sbjct: 8 RMPHALLLAGPVGMGKRD----FAANLVQALSCEDPQEGGQGCGFCS--GCR--LQRAGS 59 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H + L+ P+ G R I+VD+IR+++ L+L A + + I P + M NA Sbjct: 60 HPDNMNLF------PQEG--RQTISVDQIRQVQTHLALKARQSNVKTVTILPAEAMTLNA 111 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 AN+LLK LEEPP K + IL++ + TIRSRC + F+ Sbjct: 112 ANSLLKVLEEPPGKTVLILVTAIVSRLPMTIRSRCQRLLFS 152 >gi|315187318|gb|EFU21074.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila DSM 6578] Length = 510 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 41/297 (13%) Query: 5 AFDPVYNQR-------LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH 57 +F+ N+R L G E + L+ +GR+ HA LF G +G+GK + A Sbjct: 2 SFEVTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTS-----AAR 56 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 +L + V P+PC K+++ D + + + N +V+++ Sbjct: 57 ILAKALNCEQGV---TPEPCGTCTSCKEISQGTAIDVIEIDGASN---------TSVNDV 104 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R IR + ++V +ID V ++ +A NALLK++EEPP V+FI + + + Sbjct: 105 RVIREEVLFAPGKARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPA 164 Query: 176 TIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 TIRSRC F +S L +A ++++ + ++ A GS+ A + Sbjct: 165 TIRSRCQQYHFRLISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLF--- 221 Query: 232 CDKIIS------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 D+++S SY LI +++Q + + + ++ K A D + E ++ + Sbjct: 222 -DQVVSFSEGRLSYA-LIQEKLGLVGFERLQAVVEACVREEVKGALDLVHEILMSGV 276 >gi|317126764|ref|YP_004093046.1| DNA polymerase III subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] gi|315471712|gb|ADU28315.1| DNA polymerase III, subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] Length = 574 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 23/223 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I K L ++ HA LF G +G GK + A + + + Sbjct: 8 RVWRPTCLSDVVGQEHITKTLKNALIEEKLSHAYLFTGPRGTGKTS----AAKIISKAIN 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC+ K ++ + D + + + N VDEIR IR Sbjct: 64 CEHAPVT----EPCNECAACKGISDGTIVDVMEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPSAVKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 F +S + + ++ ++ V+ AA +ARA Sbjct: 171 QRFDFKRISAQAMIDRMREI----IEASHVHVEEAALSLIARA 209 >gi|239994634|ref|ZP_04715158.1| DNA polymerase III subunit delta [Alteromonas macleodii ATCC 27126] Length = 295 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 19/192 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y + ++HH LL G +GIGK L + +L P C S ++Q +H Sbjct: 18 YMAKKLHHGLLLTGPKGIGKYQLALGLSNALLCKQPSINGPCEQCQ----SCHLRQAGNH 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 DF L + VD+IR LS TA G +V++I D M AA Sbjct: 74 P--DFHVLES---------EKQLGVDKIREGIGKLSGTAQMGGNKVLLIPRADTMTEAAA 122 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 NALLK+LEEP +LI+ + I+ TI SRC + LS ++ ++L L G + Sbjct: 123 NALLKTLEEPTNNTFLLLITDSINKIMPTILSRC---ERQILSLPSVSESLNYLNAKGVE 179 Query: 208 SKRDFVKIAAYG 219 + + +AAYG Sbjct: 180 DASEAL-LAAYG 190 >gi|218678356|ref|ZP_03526253.1| DNA polymerase III subunit delta' [Rhizobium etli CIAT 894] Length = 149 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Query: 204 MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELL 263 +G + V AA GSV A+K+L+Y +II++Y +++ A + M ++AD L Sbjct: 16 LGLSGEGGAVLSAAKGSVGEALKLLNYGGGEIIAAYDEML-AAEGPTARKAMHRLADALS 74 Query: 264 SQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR 323 ++ FDF + + +I A+AAA G++ A+++A++Y + +R+ YNLDR+ Sbjct: 75 GRESDTIFDFFVNHVGDDIMNRARAAAGEGRITAAERLARLYSEITERLTISDAYNLDRK 134 Query: 324 QMIFHLLS 331 Q I +L+ Sbjct: 135 QTIIGILA 142 >gi|115376601|ref|ZP_01463832.1| DNA polymerase III, delta prime subunit [Stigmatella aurantiaca DW4/3-1] gi|310822492|ref|YP_003954850.1| DNA polymerase III, delta' subunit [Stigmatella aurantiaca DW4/3-1] gi|115366406|gb|EAU65410.1| DNA polymerase III, delta prime subunit [Stigmatella aurantiaca DW4/3-1] gi|309395564|gb|ADO73023.1| DNA polymerase III, delta' subunit [Stigmatella aurantiaca DW4/3-1] Length = 343 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 16/207 (7%) Query: 30 SGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQM-- 84 SG +HHA LF G +G+GK A +G A + P C P C K + Sbjct: 22 SGSVHHAYLFAGPEGVGKELAAVGLAQALTCPEQPGVG------CGACPSCLRIGKGLHP 75 Query: 85 -ASHALHDFLYLSYSLNPK---TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + + D ++ L + TG I V++IR ++ L+L +V +I Sbjct: 76 DVTWVMPDEERVARGLAGRSDFTGTPSREIRVEQIRGLQERLALRGLESRRKVALIVSAQ 135 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 MN A NA LK+LEEPP IL++ A +L TIRSRC + F L + + ++Q Sbjct: 136 TMNVQAQNAFLKTLEEPPSDTTLILVASAVDRLLPTIRSRCGKVHFGPLPVELVAQRVQQ 195 Query: 201 LKIMGWDSKRDFVKIAAYGSVARAIKI 227 + + + + A GS+ RA+ + Sbjct: 196 ERRLDPPTA-ALAAVMAGGSLGRALGL 221 >gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] Length = 638 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN + C F +Q + Y + L+ + VD+I+ + Sbjct: 67 HPREDGEACNECESCRAFNEQRS--------YNIFELDAASNNG-----VDQIKVLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPPQ V+FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F ++ N L+ Sbjct: 174 IYDFERMTVANTINHLK 190 >gi|120598523|ref|YP_963097.1| DNA polymerase III subunits gamma and tau [Shewanella sp. W3-18-1] gi|120558616|gb|ABM24543.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. W3-18-1] Length = 984 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCG------SCVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + L Sbjct: 197 CLQFNLKSLTQDEIGTQL 214 >gi|88857873|ref|ZP_01132515.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas tunicata D2] gi|88819490|gb|EAR29303.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas tunicata D2] Length = 820 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 31/206 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQNFHQLVGQEHVKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD------- 113 + P C S L+ + G++ ++ +D Sbjct: 65 ELGITATPCGQC-----------------------SACLDIEAGRYIDLLEIDAASRTKV 101 Query: 114 -EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + R I + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTREILDNVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKAL 198 + TI SRCL ++LS + + L Sbjct: 162 LPVTILSRCLQFNLSALSRPQIEQQL 187 >gi|331003130|ref|ZP_08326640.1| hypothetical protein HMPREF0491_01502 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412961|gb|EGG92338.1| hypothetical protein HMPREF0491_01502 [Lachnospiraceae oral taxon 107 str. F0167] Length = 323 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 17/186 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E + L+ + HA + G++G+GK+ + +A ++ + Sbjct: 5 ILGNEKVRNHLNDSIKKNTISHAYILSGDRGVGKSKIAKEFAMKLICE--------KHTG 56 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 C P +Q ++++ DF Y+ + + I +D IR I +++ G + Sbjct: 57 CGEC-PACRQFSANSYPDFFYMD-------AQGKESIGIDRIRENIVADVAIRPYHGKIK 108 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M A NALLK++EEPP V+ +L+ S +L TIRSRC+ + ++S Sbjct: 109 IYVIDEADKMTVGAQNALLKTIEEPPDYVVILLLVKNSSLLLETIRSRCIKLLLTAVSNE 168 Query: 193 NLYKAL 198 + K L Sbjct: 169 RIKKWL 174 >gi|222110704|ref|YP_002552968.1| DNA polymerase iii subunits gamma and tau [Acidovorax ebreus TPSY] gi|221730148|gb|ACM32968.1| DNA polymerase III, subunits gamma and tau [Acidovorax ebreus TPSY] Length = 678 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACTDIDSGRFPDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRV 195 >gi|145299022|ref|YP_001141863.1| DNA polymerase III, delta' subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142851794|gb|ABO90115.1| DNA polymerase III, delta' subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPFVK 82 LSQ +GR+ HA L G+ G+GK L R A H+ Q PD + P C+ C F K Sbjct: 12 LSQTAEAGRLGHAWLLLGDPGLGKEQLAERLARLHLCQQPDRGE-PCGQCHS--CQLFDK 68 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 H + +++ KT I V+ IR I L +A G +V++I + M Sbjct: 69 G------HHPDLGTVTVDSKT------IGVEAIREICARLQNSAQLGRGKVVIIPDAERM 116 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 +AANALLK+LEEP L +LI+ +L TI SRC +E + L + Sbjct: 117 TESAANALLKTLEEPAGDSLLLLIASQVSRLLPTILSRCHKHVCQLPTEGETVRWLAE-- 174 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKILHYDCD----KIISSYIDLIHIPRQEYALQKMQQI 258 G + V+I G+ R ++ + D +++ S++ L P + A Q+ Sbjct: 175 -QGHQATLAQVRI-CQGAPLRVLRYIEEQQDGKRRELLESFVSLSLTPTR--ATHVCSQL 230 Query: 259 ADE 261 ADE Sbjct: 231 ADE 233 >gi|291523175|emb|CBK81468.1| DNA polymerase III, subunits gamma and tau [Coprococcus catus GD/7] Length = 528 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L R+ HA LF G +G GK ++ +A V Sbjct: 8 RKWRPSNFDEVRGQDHIVTTLKNQIEMNRIGHAYLFCGTRGTGKTSIAKIFAKAV----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV N PC+ A + + G VD IR IR ++ Sbjct: 63 NCEHPV---NGSPCNECAMCRAVNEQRSMNVIEIDAASNNG-------VDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YSPSEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L +L I D+ +V A GS+ A+ +L Sbjct: 173 YDFRRISTGTIAGRLRELADAEGIDAEDAALAYVARMADGSMRDALSLL 221 >gi|188997277|ref|YP_001931528.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium sp. YO3AOP1] gi|188932344|gb|ACD66974.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium sp. YO3AOP1] Length = 501 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 15/183 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E + K L R+ HA +F G +G+GK T+ R VL Sbjct: 8 RKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIA-RILSKVLN--- 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K PV + + C + ++ + D Y ++ + + +D+IR IR + Sbjct: 64 -CKNPVDYESCNQCENCI-EIDKGSFPDM----YEIDAASNRG-----IDDIRMIRDNVG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP + +FIL + I TI+SRC + Sbjct: 113 YQPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQT 172 Query: 184 IKF 186 F Sbjct: 173 FIF 175 >gi|167719247|ref|ZP_02402483.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei DM98] Length = 376 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|331003026|ref|ZP_08326538.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413070|gb|EGG92445.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon 107 str. F0167] Length = 516 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E I + L +GR+ HA LF G +G GK ++ A + Sbjct: 8 RKFRPSNFDEVIGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C P K + S + + + + N VD IR I+ + Sbjct: 68 TDAGPCNEC------PTCKSILSETSINVVEIDAASNNG---------VDNIRDIKEQVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 113 YPPTFGKYKVFIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPVTVLSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F + + + + L+ L Sbjct: 173 YDFKRIGIDTITQRLKTL 190 >gi|331087289|ref|ZP_08336359.1| hypothetical protein HMPREF0987_02662 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408975|gb|EGG88436.1| hypothetical protein HMPREF0987_02662 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 343 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 18/214 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH +I +++ ++ HA + G++G GK L +A LQ P C Sbjct: 21 VIGHNEIIEYIQNAVKMDKVSHAYIMNGQKGSGKKMLADLFA-RTLQCEGEGVEPCGECR 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 KQ + D + +++ P + I+VD+IR ++ + + + ++ Sbjct: 80 S------CKQADGNNQPDIIKVTHE-KPNS------ISVDDIRTQVNNDILIKPYSSKYK 126 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I D M A NALLK++EEPP + L++ + +L TIRSRC+ +K ++ + Sbjct: 127 IYIIPEADKMTVQAQNALLKTIEEPPSYAVIFLLTENAEVLLPTIRSRCVMLKLRNIKDK 186 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + K L E+++I D K D A G++ RAI Sbjct: 187 LIKKYLMEEMEI--PDYKADICTAFAQGNMGRAI 218 >gi|169830256|ref|YP_001716238.1| DNA polymerase III, delta prime subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637100|gb|ACA58606.1| DNA polymerase III, delta prime subunit [Candidatus Desulforudis audaxviator MP104C] Length = 338 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 26/218 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E +++ + G + HA LF G G+GK +L A ++ N A C Sbjct: 5 IIGQELAKRYFQRAVEGGCLAHAYLFHGPAGVGKKSLARALAQALVCN----TAENNSCG 60 Query: 74 PDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P C F+ SH D L + I + ++R ++ L + G Sbjct: 61 LCPACRMFLA--GSH--PDLRVLDGA--------EKSIGIAQVRELQQAL-VYRPYGARH 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++ +G+ AANALLK+LEEPP VLFIL S + T+ SRCL I F L+ + Sbjct: 108 LCLVQEAEGLTAEAANALLKTLEEPPGPVLFILTSARPERLPPTVVSRCLKIPFRPLTRD 167 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 + LE MG+ K D V +AA GS+ RA ++ Sbjct: 168 EITSGLE---TMGF--KGDMVPLAARLAGGSLGRAAEL 200 >gi|167815434|ref|ZP_02447114.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 91] Length = 378 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] gi|156108224|gb|EDO09969.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] Length = 621 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|257784893|ref|YP_003180110.1| DNA-directed DNA polymerase [Atopobium parvulum DSM 20469] gi|257473400|gb|ACV51519.1| DNA-directed DNA polymerase [Atopobium parvulum DSM 20469] Length = 389 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 27/233 (11%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL ++ L++ ++ HA LF G G GK A VL Sbjct: 16 PQALTRLQDQPQVQNLLARALHEHKLGHAYLFVGAPGSGKGLAAKALAQCVL-------- 67 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK----TGKWRTVITVDEIRRIRYFLS 123 C+ Q A D + +S +P T +++IR++ +S Sbjct: 68 ---------CA----QGGDAACDDCIRISRGTHPDVHVLTPASANGYLIEQIRQLTADVS 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L ++ +ID D + N+ANALLK++EEPP +FIL + +S +L TI SRC Sbjct: 115 LAPMRSTHKIYVIDRADLLRENSANALLKTIEEPPADTIFILSARSSSAVLPTIVSRCQV 174 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + F +L++ A+ ++ + + + +AA G+ +RA++ L K I Sbjct: 175 VAFRTLTDAVAKAAI--MREISATEQEARIALAATGTPSRAVEFLQSSTRKNI 225 >gi|149191870|ref|ZP_01870105.1| DNA polymerase III subunit delta' [Vibrio shilonii AK1] gi|148834305|gb|EDL51307.1| DNA polymerase III subunit delta' [Vibrio shilonii AK1] Length = 318 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 13/156 (8%) Query: 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 A+L + + G+ ++ RY ++ D S+ P C+ C +K +H Sbjct: 26 AMLIQAKVGLAPESMIERYVAGLMCQNDKSE-PCGFCH---CCDLLKASGHPDVH----- 76 Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 Y L K K ++V++IR+ + ++ G++RVI+I D MN +AANALLK+LE Sbjct: 77 -YVLPEKDKK---SLSVEQIRQANKWALESSQFGHYRVIVIPQADRMNASAANALLKTLE 132 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 EPP + LFIL + + +L TIRSRC +S SE Sbjct: 133 EPPAQCLFILSTENTKLLLPTIRSRCEVWHVSSPSE 168 >gi|260173527|ref|ZP_05759939.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|315921797|ref|ZP_07918037.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|313695672|gb|EFS32507.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] Length = 621 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|217421704|ref|ZP_03453208.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 576] gi|217395446|gb|EEC35464.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 576] Length = 712 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 28/304 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCR------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQL 295 +G L Sbjct: 286 AGLL 289 >gi|121594691|ref|YP_986587.1| DNA polymerase III subunits gamma and tau [Acidovorax sp. JS42] gi|120606771|gb|ABM42511.1| DNA polymerase III, subunits gamma and tau [Acidovorax sp. JS42] Length = 679 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACTDIDSGRFPDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRV 195 >gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] Length = 621 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|260909580|ref|ZP_05916282.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] gi|260636316|gb|EEX54304.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] Length = 379 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 35/251 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 + G +D+++ L R+ HAL+ G G GK LG +A ++L + AP C Sbjct: 6 VIGQDDVKRRLVSMVQHNRLPHALMLCGPSGSGKMALGLAFASYLLCERHAEGDAPCGEC 65 Query: 73 ----------NPDP--CSPFVKQMASHALH-----DFL-----YLSYSLNPKTGKW---- 106 +PD P ++ + + H DF L +L P W Sbjct: 66 ASCAMMRRFEHPDLHFSYPVIRPAGTSSEHKMNSDDFAPQWREMLQKTLYPSMDLWLDQM 125 Query: 107 -----RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + + V E + L + ++ G ++V ++ + MN+ AN LLK LEEPP + Sbjct: 126 DAANQQAQMGVGESDLLMKRLGMKSSQGGYKVAVVWLAERMNQECANKLLKLLEEPPAQT 185 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK-IMGWDSKRDFVKIAAYGS 220 LFI++ +L TI+SR I ++ +++ +AL Q + IM D++R V A GS Sbjct: 186 LFIMVCQEPELLLETIKSRTQRIDLAPITVDDMQQALIQKRNIMPEDARR--VARLANGS 243 Query: 221 VARAIKILHYD 231 A+ L D Sbjct: 244 WTNALAELSVD 254 >gi|167562528|ref|ZP_02355444.1| DNA polymerase III subunits gamma and tau [Burkholderia oklahomensis EO147] Length = 356 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|326423917|ref|NP_760873.2| DNA polymerase III subunits gamma and tau [Vibrio vulnificus CMCP6] gi|319999294|gb|AAO10400.2| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus CMCP6] Length = 734 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 59/363 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + AP C D C +++ D L + + K V++ R + + Sbjct: 68 ITSAPCGQC--DTC----REIEEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG--SVARAIKILHYDCDKIISSYID 241 ++ + +++ L DF+ +A G + ARA+ ++ + D S D Sbjct: 173 FHLKPITVDAIHQQL------------DFI-LAKEGVTAQARALGMIAHAAD---GSMRD 216 Query: 242 LIHIPRQEYALQKMQQIADELLSQ-------DQKIAFDFLIEFILKEICKSA--KAAALS 292 + + Q AL QI +L+S DQ I L+E I + + A K L+ Sbjct: 217 ALSLTDQAIALGN-GQIETDLVSHMLGTIDTDQAI---HLLEAISSKQPQVAMDKIQQLA 272 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY-----NLDRRQ---MIFHLLSKARECNDLYFRDF 344 E D + Q L ++H +MY +LD+ Q LLS+A D+ F Sbjct: 273 QNGAEWDGLLQ---QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDVQL--F 327 Query: 345 YAI 347 Y I Sbjct: 328 YQI 330 >gi|238563644|ref|ZP_00438506.2| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8 horse 4] gi|238520253|gb|EEP83715.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8 horse 4] Length = 449 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|167619803|ref|ZP_02388434.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis Bt4] Length = 378 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] Length = 599 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + L SG++ HA LF G +G+GK T +A + +NP Sbjct: 9 RKYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCENP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +C + C F +Q + Y + L+ + +V+ I+ + Sbjct: 69 SQDGEACNVC--ESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQIGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N + L+ + Sbjct: 174 IYDFERMTVGNTIEHLKSV 192 >gi|304409215|ref|ZP_07390836.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS183] gi|307303218|ref|ZP_07582973.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica BA175] gi|304353036|gb|EFM17433.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS183] gi|306913578|gb|EFN44000.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica BA175] Length = 1125 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L + Sbjct: 170 CLQFNLKSLTQGEIGTQLNHI 190 >gi|163750244|ref|ZP_02157486.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica KT99] gi|161330100|gb|EDQ01084.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica KT99] Length = 882 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGITASPCGQCS------SCVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + L Sbjct: 170 CLQFNLKSLTQDEISAQL 187 >gi|322516676|ref|ZP_08069588.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus vestibularis ATCC 49124] gi|322124793|gb|EFX96225.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus vestibularis ATCC 49124] Length = 550 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKQGA 181 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L LE+ + D + A G + A+ IL Sbjct: 182 IKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSIL 220 >gi|217972946|ref|YP_002357697.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS223] gi|217498081|gb|ACK46274.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS223] Length = 1115 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L + Sbjct: 170 CLQFNLKSLTQGEIGTQLNHI 190 >gi|160875802|ref|YP_001555118.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS195] gi|160861324|gb|ABX49858.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS195] gi|315267992|gb|ADT94845.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS678] Length = 1137 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L + Sbjct: 197 CLQFNLKSLTQGEIGTQLNHI 217 >gi|212550986|ref|YP_002309303.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549224|dbj|BAG83892.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAYLFCGPRGVGKTTCARIFAKTI--NCT 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 K CN D C F + SH + Y L+ + +V+ IR + + Sbjct: 67 CLKEDGEACNECDFCQSF-NENRSHNI-------YELDAASNN-----SVENIRFLTEQM 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G+++V +ID V ++ +A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 114 RIPPQIGHYKVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F+ ++ N++ + LE Sbjct: 174 IYDFSRITINDIVEYLE 190 >gi|313673332|ref|YP_004051443.1| DNA polymerase iii, subunits gamma and tau [Calditerrivibrio nitroreducens DSM 19672] gi|312940088|gb|ADR19280.1| DNA polymerase III, subunits gamma and tau [Calditerrivibrio nitroreducens DSM 19672] Length = 529 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 25/194 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L GR+ HA LF G +GIGK T A V Sbjct: 9 RKYRPQNFDEIVGQEFVVKTLKNAIELGRISHAYLFTGPRGIGKTT-----AARV----- 58 Query: 64 FSKAPVRMCNP---DPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA V NP +PC+ ++ + D + + + N K V+E R I Sbjct: 59 FAKA-VNCLNPIGVNPCNQCSNCMEINNGTSVDVIEIDGASNRK---------VEEARNI 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + ++V +ID V + A NALLK+LEEPP V+FIL + + I TI Sbjct: 109 RENVRILPINNKYKVYIIDEVHMLTEEAFNALLKTLEEPPDYVIFILATTDAHKIPMTIL 168 Query: 179 SRCLSIKFNSLSEN 192 SRC F + N Sbjct: 169 SRCQKYDFKKIPNN 182 >gi|37680595|ref|NP_935204.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus YJ016] gi|37199343|dbj|BAC95175.1| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus YJ016] Length = 730 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 59/363 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + AP C D C +++ D L + + K V++ R + + Sbjct: 68 ITSAPCGQC--DTC----REIEEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG--SVARAIKILHYDCDKIISSYID 241 ++ + +++ L DF+ +A G + ARA+ ++ + D S D Sbjct: 173 FHLKPITVDAIHQQL------------DFI-LAKEGVTAQARALGMIAHAAD---GSMRD 216 Query: 242 LIHIPRQEYALQKMQQIADELLSQ-------DQKIAFDFLIEFILKEICKSA--KAAALS 292 + + Q AL QI +L+S DQ I L+E I + + A K L+ Sbjct: 217 ALSLTDQAIALGN-GQIETDLVSHMLGTIDTDQAI---HLLEAISSKQPQVAMDKIQQLA 272 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY-----NLDRRQ---MIFHLLSKARECNDLYFRDF 344 E D + Q L ++H +MY +LD+ Q LLS+A D+ F Sbjct: 273 QNGAEWDGLLQ---QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDVQL--F 327 Query: 345 YAI 347 Y I Sbjct: 328 YQI 330 >gi|167738244|ref|ZP_02411018.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 14] Length = 380 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|167893928|ref|ZP_02481330.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 7894] Length = 387 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] Length = 621 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|291547628|emb|CBL20736.1| hypothetical protein CK1_28540 [Ruminococcus sp. SR1/5] Length = 329 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 110/216 (50%), Gaps = 24/216 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+DI + L +G++ H+ +F GE G GK L +A LQ P C Sbjct: 7 IIGHDDIIRHLKNAIETGKVSHSYIFTGEPGSGKKLLAGTFAA-ALQCESGESEPCMTC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D C K++ D + +++ K G I++DE+R ++ + + ++ Sbjct: 65 -DSC----KKVIGKNHPDIITVTHE---KPGS----ISIDEVRDQVVRDVDIKPYCSPYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I + M A NA+LK++EEPP+ + +L++ ++L TIRSRC+ + + ++ Sbjct: 113 IYIIPDAEMMTVQAQNAILKTIEEPPEYAVIMLLTSNIDSLLPTIRSRCVRLDL-KVVDD 171 Query: 193 NLYKA--LEQLKIMGWDSKRDFVKIAAY--GSVARA 224 +L K +E L++ + ++ D A+Y GS+ +A Sbjct: 172 SLVKEYLMEHLQVPDYQAEID----ASYAQGSIGKA 203 >gi|167823844|ref|ZP_02455315.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 9] Length = 381 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|256545280|ref|ZP_05472645.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis ATCC 51170] gi|256399107|gb|EEU12719.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis ATCC 51170] Length = 583 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 34/261 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + L SG++ HA LF GE+G GK T F A + L Sbjct: 7 REYRPQKFSDVLGQDRVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCLNP 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S P C + C K + + D + + + N + +D+IR ++ Sbjct: 67 IDLS--PCGEC--ENC----KSIEEESTMDVVEMDAASNRR---------IDDIRNLKET 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 110 VVYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + ++ K ++ + I ++ + A G++ A+ IL D+++S Sbjct: 170 QKFEFNKIGREDIIKQIDIILSDRNITIEQEAKELIVKKAKGAMRDALSIL----DQVLS 225 Query: 238 SYIDLIHIPRQEYALQKMQQI 258 I + + L+ ++ I Sbjct: 226 -------IDKNNFTLKDVENI 239 >gi|297538152|ref|YP_003673921.1| DNA polymerase III subunits gamma and tau [Methylotenera sp. 301] gi|297257499|gb|ADI29344.1| DNA polymerase III, subunits gamma and tau [Methylotenera sp. 301] Length = 573 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 23/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTVARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C+ ++ D + + + N + VD +R + Sbjct: 65 EKGITAKPCGVC--DACT----EIDRGRFVDLIEVDAASNTQ---------VDAMRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVARAIKI 227 CL ++ ++ + L+ I+G + + + AA GS+ A+ + Sbjct: 170 CLQFNLRQMAGTSIIEHLQ--NILGQENIPFEPTALHLIARAAAGSMRDALSL 220 >gi|237733438|ref|ZP_04563919.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383473|gb|EEO33564.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 640 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 140/329 (42%), Gaps = 30/329 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P + G E I L R+ HA LF G +G GK T+ A + N Sbjct: 8 RSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAKAL--NCT 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C P K + D + + + N VDE+R + + Sbjct: 66 GENPPCDQC------PNCKAITVGEHPDVIEIDAASNN---------GVDEVRDLIDKVK 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V M+ A NALLK+LEEPP ++F+L + IL TI SRC Sbjct: 111 YAPINGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQR 170 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 F + +++ LE ++ ++K+ ++ A SVA+ + D I+ + Sbjct: 171 FDFKKVENHDIISRLEY--VLKSENKK--YELPALESVAKLAEGGMRDALSILEQCLAY- 225 Query: 244 HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQ 303 E ++ + + LLS D KI+ F+ + + K+I +L L + I + Sbjct: 226 ---NNELTVESVNMVYG-LLSMDNKIS--FIKQLLSKDI--KGVLTSLDNMLSGSIDIKR 277 Query: 304 IYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + F LV + +Y + I +L++ Sbjct: 278 LTFDLVDVLKDIIIYKNTQDVSILFVLTQ 306 >gi|30250114|ref|NP_842184.1| putative DNA polymerase III (delta' subunit) protein [Nitrosomonas europaea ATCC 19718] gi|30139221|emb|CAD86091.1| putative DNA polymerase III (delta' subunit) protein [Nitrosomonas europaea ATCC 19718] Length = 353 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 32/176 (18%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-----------------------QNPDFSK 66 S + HHALL +G +GIGK A +L +P+F Sbjct: 22 SAQRHHALLLKGRRGIGKLGFALALAKSILCGQGDAAGVACGKCQDCYWFEQGLHPNF-- 79 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLT 125 R+ P+ S Q + D + + K+G K I++ +IR + F+ L+ Sbjct: 80 ---RLLEPEALS---AQEGATDKDDEENRREAGSTKSGRKPSQQISIAQIRALDDFIYLS 133 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A+ +V++I P + MN AANALLK LEEPP +VLFIL++H I T+ SRC Sbjct: 134 AHQARDKVVLIHPAEAMNTAAANALLKKLEEPPPEVLFILVTHNVSLIPPTVLSRC 189 >gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] Length = 569 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 34/229 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ HA LF G +G GK ++ +A V N Sbjct: 7 RKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEVNGNEI 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + K V + D S G VDE+R I+ + Sbjct: 67 YQKENVDIIEIDAAS-----------------------NNG-------VDEVRDIKEAIK 96 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 97 FLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQR 156 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F +LS+ L L ++ ++ ++ + + A G + AI IL Sbjct: 157 FEFKNLSQEQLIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISIL 205 >gi|161870312|ref|YP_001599482.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis 053442] gi|161595865|gb|ABX73525.1| DNA polymerase III tau and gamma subunit [Neisseria meningitidis 053442] Length = 706 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLS 168 Query: 180 RCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 >gi|306831039|ref|ZP_07464201.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427062|gb|EFM30172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 559 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 23/236 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIK 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 +L L++ +I + + A G + A+ IL +Y+ L Sbjct: 179 LAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNYVSL 234 >gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] Length = 548 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 14/200 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I++ + + HA +F G +G GK T+ A + N + Sbjct: 7 RKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL--NCE 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 CN CS K + ++ D L + + N V++IR IR ++ Sbjct: 65 SLNNEGEPCNE--CSQ-CKAIRGNSHADVLEIDAASNN---------GVEQIREIREQVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 113 YAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKI 203 F + ++ + L + I Sbjct: 173 FDFRRIGPRDIIERLRHVAI 192 >gi|289208431|ref|YP_003460497.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. K90mix] gi|288944062|gb|ADC71761.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. K90mix] Length = 324 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 13/182 (7%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDP 76 E I K L + GR+ +L G G+GK L +L Q ++ CN Sbjct: 9 EPIRKRLVRRGRDGRLPSGILITGSPGLGKTLLTTSVVQSLLCQRASGNEPACGECN--A 66 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C +H + L P GK I VD +R FL+L+ + G R ++I Sbjct: 67 CRSL-----EGGVHPEVRLLEPAEP--GK---DILVDAVRDATEFLTLSGSGGALRALII 116 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 P D +N NAANALLK+LEEPP L + ++ +TIRSRC + S S +++ Sbjct: 117 RPADALNVNAANALLKTLEEPPAGATLFLEAARPASLPATIRSRCQQVDVVSPSIEQVHE 176 Query: 197 AL 198 L Sbjct: 177 WL 178 >gi|53714518|ref|YP_100510.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46] gi|52217383|dbj|BAD49976.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46] Length = 614 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 NLTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIF----DQVVS 228 >gi|189499967|ref|YP_001959437.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeobacteroides BS1] gi|189495408|gb|ACE03956.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeobacteroides BS1] Length = 398 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 27/247 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 +I R + P + E I + + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPKKFADITAQEHITRTIQNSLRLGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 59 ---LQNPDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + +P + K C + C F + SLN + +VD+ Sbjct: 65 SRMIDDPVYLKEVTEPCGECESCRDFDE-------------GTSLNISEFDAASNNSVDD 111 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR++R + G +RV +ID V ++ A NA LK+LEEPP +FI + I Sbjct: 112 IRQLRENVRYGPQKGRFRVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFIFATTELHKIP 171 Query: 175 STIRSRCLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKILHY 230 +TI SRC F + ++ K L+ + + +G DS+ + A GS+ A IL Sbjct: 172 ATIASRCQRFNFKRIPLEDIEKQLQGICEAEDLGVDSESLQLIGRKAQGSMRDAQSIL-- 229 Query: 231 DCDKIIS 237 D++I+ Sbjct: 230 --DQVIA 234 >gi|283833606|ref|ZP_06353347.1| DNA polymerase III, delta' subunit [Citrobacter youngae ATCC 29220] gi|291071289|gb|EFE09398.1| DNA polymerase III, delta' subunit [Citrobacter youngae ATCC 29220] Length = 334 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + +++ Q P+ K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLMCQQPEGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ YSL P+ GK + + VD +R + L + G +V+ Sbjct: 67 -----LMQAGTHP--DY----YSLLPEKGK--STLGVDAVREVSEKLYEHSRLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I + AANALLK+LEEPP + F L S +L+T+RSRC Sbjct: 114 IPEAAQLTDAAANALLKTLEEPPAQTWFFLASREPARLLATLRSRC 159 >gi|212694010|ref|ZP_03302138.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855] gi|212663542|gb|EEB24116.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855] Length = 637 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 43 RKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 102 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 103 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 147 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 148 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 207 Query: 183 SIKFNSLS 190 FN + Sbjct: 208 IYDFNRIG 215 >gi|167581686|ref|ZP_02374560.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis TXDOH] Length = 384 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|170726146|ref|YP_001760172.1| DNA polymerase III subunits gamma and tau [Shewanella woodyi ATCC 51908] gi|169811493|gb|ACA86077.1| DNA polymerase III, subunits gamma and tau [Shewanella woodyi ATCC 51908] Length = 911 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ C +++ D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCSS--CV----EISEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL+++ + + L Sbjct: 170 CLQFNLKSLTQDEIIQQL 187 >gi|294778363|ref|ZP_06743786.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus PC510] gi|294447625|gb|EFG16202.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus PC510] Length = 603 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 9 RKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 69 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|255010713|ref|ZP_05282839.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] gi|313148519|ref|ZP_07810712.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] gi|313137286|gb|EFR54646.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] Length = 614 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 NLTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVDDTVNHLSYVASKEGITAEPEALNVIALKADGGMRDALSIF----DQVVS 228 >gi|288941601|ref|YP_003443841.1| DNA polymerase III subunit delta' [Allochromatium vinosum DSM 180] gi|288896973|gb|ADC62809.1| DNA polymerase III, delta prime subunit [Allochromatium vinosum DSM 180] Length = 359 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ H LL G G+GK L A +L Q P C + +A+ + Sbjct: 43 RLAHGLLISGPNGVGKRALARALAQSLLCQTPSAQGLACGQCA------DCRLLAAGSHP 96 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + K+G+ I +D +R SLT + ++V++IDP D +N+ AANAL Sbjct: 97 DLIEVGPDPESKSGE----IPIDAVRLFAERESLTPSRALFKVVLIDPADRLNQAAANAL 152 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LK+LEEP + LI + +TIRSRCL I Sbjct: 153 LKTLEEPTGHTVLCLIGERIGRLPATIRSRCLLIPV 188 >gi|312862742|ref|ZP_07722982.1| DNA polymerase III, subunit gamma and tau [Streptococcus vestibularis F0396] gi|311101602|gb|EFQ59805.1| DNA polymerase III, subunit gamma and tau [Streptococcus vestibularis F0396] Length = 550 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKQGA 181 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L LE+ + D + A G + A+ IL Sbjct: 182 IKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSIL 220 >gi|114565606|ref|YP_752760.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336541|gb|ABI67389.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 499 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + G E L G++ HA LF G +G GK ++ + + + Sbjct: 8 RAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIA-KIIAKAVNCEN 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S+ CN CS + + + D + + + N +DEIR +R + Sbjct: 67 LSEG--EPCNQ--CSS-CQDINNGNFMDVIEIDAASNR---------GIDEIRDLREKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +V +ID V + A NALLK++EEPP V+FIL + S I +TIRSRC Sbjct: 113 VLPAQGKNKVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQV 172 Query: 184 IKFNSLSENNLYKAL 198 F L+ + + L Sbjct: 173 YNFRRLTTAEITERL 187 >gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] Length = 610 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 20/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L SG++ HA LF G +G+GK T +A + N Sbjct: 26 RKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCL 83 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q + Y + L+ + +V+ I+ + Sbjct: 84 HPTADGEACNECESCKAFNEQRS--------YNIFELDAASNN-----SVENIKSLMDQT 130 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 131 RIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 190 Query: 183 SIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 F ++ N+ L K E+ I D + + A G + A+ + Sbjct: 191 IYDFERMTTNDIINHLKKVAEKEGITYEDEALNIIAEKADGGMRDALSV 239 >gi|254493794|ref|ZP_05106965.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae 1291] gi|226512834|gb|EEH62179.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae 1291] Length = 707 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|189462594|ref|ZP_03011379.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136] gi|189430755|gb|EDU99739.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136] Length = 623 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCL 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +V++IR + + Sbjct: 67 HPTADGEACNECESCRAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 FN +S N+ + LE + Sbjct: 174 IYDFNRISVNDTVEHLENV 192 >gi|260886528|ref|ZP_05897791.1| DNA polymerase III, delta prime subunit [Selenomonas sputigena ATCC 35185] gi|330839629|ref|YP_004414209.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] gi|260863671|gb|EEX78171.1| DNA polymerase III, delta prime subunit [Selenomonas sputigena ATCC 35185] gi|329747393|gb|AEC00750.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] Length = 336 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 17/214 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE L GR+ HALLF G G+GK + A +L + AP +C Sbjct: 10 VLGHEGNIHRLRTMLRDGRLPHALLFSGISGVGKKKVARLLAAALLCGRE--DAPCGVC- 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C F+ S D++ + P++ GK V+ +D +R I + Sbjct: 67 -PSCRAFLAGTHS----DYVEAA----PESRGKGVRVLRIDAVREIEKKAARKPLLSGRF 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V+++D D MN AAN+LLK+LEEP V F+L++ +L TI SR + F +LS Sbjct: 118 VVLVDDADAMNEAAANSLLKTLEEPQGAVFFLLVTAKRTALLPTILSRVRDMHFGALSPE 177 Query: 193 NLYKALEQLKIMGWDSKRDF-VKIAAYGSVARAI 225 + +A L G +S++ + +AA GS+ A+ Sbjct: 178 GIEEA---LLARGVESRKAHSLAMAADGSLGHAL 208 >gi|253565020|ref|ZP_04842476.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5] gi|251946485|gb|EES86862.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5] Length = 614 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 NLTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIF----DQVVS 228 >gi|240125776|ref|ZP_04738662.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae SK-92-679] gi|268684373|ref|ZP_06151235.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-92-679] gi|268624657|gb|EEZ57057.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-92-679] Length = 707 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|160889964|ref|ZP_02070967.1| hypothetical protein BACUNI_02398 [Bacteroides uniformis ATCC 8492] gi|317481382|ref|ZP_07940450.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156860352|gb|EDO53783.1| hypothetical protein BACUNI_02398 [Bacteroides uniformis ATCC 8492] gi|316902478|gb|EFV24364.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 375 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 38/294 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV---- 69 + G E ++ L Q GR+ HA LF G G+GK L YA ++ P+ ++ Sbjct: 7 IIGQEAAKQRLIQEVQEGRIPHAQLFCGPAGVGKLPLALAYARYIC-CPNRTETDACGTC 65 Query: 70 -------RMCNPDP--CSPFVKQMAS-------------HALHDFLY--LSYSLNPKTGK 105 ++ +PD P VK H L + Y L++ LN + Sbjct: 66 PSCVKWNKLVHPDVHFVYPIVKSAKGKKEVCDDYIANWRHLLLNSPYFGLNHWLNEMDAE 125 Query: 106 -WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + +I E I LSL ++ G ++V ++ + ++ AN LLK LEEPP+K +F+ Sbjct: 126 NGQAIIYAKESDEITRKLSLKSSEGGYKVTIVWLPEKLHEVCANKLLKLLEEPPEKTIFL 185 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVA 222 LIS A IL TI SR + E ++ +AL+Q + RD IA A G Sbjct: 186 LISEAPEMILPTILSRTQRFNIPKIEEADIAEALQQKYGV---QPRDSETIAHLANGDFI 242 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + + ++ L+ + Q +++M+Q +++L + ++ +FL Sbjct: 243 KALETIHLNEENELFFNLFVSLMRLSYQR-KIREMKQWSEQLAAMGRERQKNFL 295 >gi|320155732|ref|YP_004188111.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus MO6-24/O] gi|319931044|gb|ADV85908.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus MO6-24/O] Length = 730 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 59/363 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + AP C D C +++ D L + + K V++ R + + Sbjct: 68 ITSAPCGQC--DTC----REIEEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG--SVARAIKILHYDCDKIISSYID 241 ++ + +++ L DF+ +A G + ARA+ ++ + D S D Sbjct: 173 FHLKPITVDAIHQQL------------DFI-LAKEGVTAQARALGMIAHAAD---GSMRD 216 Query: 242 LIHIPRQEYALQKMQQIADELLSQ-------DQKIAFDFLIEFILKEICKSA--KAAALS 292 + + Q AL QI +L+S DQ I L+E I + + A K L+ Sbjct: 217 ALSLTDQAIALGNG-QIETDLVSHMLGTIDTDQAI---HLLEAISSKQPQVAMDKIQQLA 272 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY-----NLDRRQ---MIFHLLSKARECNDLYFRDF 344 E D + Q L ++H +MY +LD+ Q LLS+A D+ F Sbjct: 273 QNGAEWDGLLQ---QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDVQL--F 327 Query: 345 YAI 347 Y I Sbjct: 328 YQI 330 >gi|167910620|ref|ZP_02497711.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 112] Length = 409 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|167623521|ref|YP_001673815.1| DNA polymerase III subunits gamma and tau [Shewanella halifaxensis HAW-EB4] gi|167353543|gb|ABZ76156.1| DNA polymerase III, subunits gamma and tau [Shewanella halifaxensis HAW-EB4] Length = 930 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGKCS------ACVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNL 194 CL SL+++ + Sbjct: 170 CLQFNLKSLTQDEI 183 >gi|153812008|ref|ZP_01964676.1| hypothetical protein RUMOBE_02401 [Ruminococcus obeum ATCC 29174] gi|149831907|gb|EDM86993.1| hypothetical protein RUMOBE_02401 [Ruminococcus obeum ATCC 29174] Length = 329 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 18/213 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I + L +G++ H+ +F G G GK L YA LQ P + C Sbjct: 7 IIGHEEIIRHLQNAMKTGKVSHSYIFTGRPGSGKKLLATTYA-MTLQCEAGGTEPCQKC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D C K+ D + +++ P T I++DEIR ++ + +++ + + Sbjct: 65 -DSC----KKALGKNHPDIIMVNHE-KPGT------ISIDEIREQVIHDVAIKPYSSPHK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I + M A NALLK++EEPP+ + +L++ +L TI+SRC+ + + ++ Sbjct: 113 IYIIPDAEMMTVQAQNALLKTIEEPPEYAVIMLLTSNVDALLPTIQSRCVRLDLKVVDDS 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARA 224 + K L E+L + + ++ D A GS+ RA Sbjct: 173 LVKKYLMERLHVPDYQAEIDAS--FAQGSIGRA 203 >gi|265751132|ref|ZP_06087195.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238028|gb|EEZ23478.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 603 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 9 RKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 69 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|167918645|ref|ZP_02505736.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei BCC215] Length = 423 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|240128297|ref|ZP_04740958.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae SK-93-1035] gi|268686694|ref|ZP_06153556.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626978|gb|EEZ59378.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-93-1035] Length = 707 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|194098698|ref|YP_002001760.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae NCCP11945] gi|193933988|gb|ACF29812.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae NCCP11945] gi|317164296|gb|ADV07837.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae TCDC-NG08107] Length = 736 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 250 >gi|167836377|ref|ZP_02463260.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis MSMB43] Length = 376 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|237710325|ref|ZP_04540806.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA] gi|237727844|ref|ZP_04558325.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434700|gb|EEO44777.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229455787|gb|EEO61508.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA] Length = 603 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 9 RKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 69 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|34497065|ref|NP_901280.1| DNA polymerase III subunits gamma and tau [Chromobacterium violaceum ATCC 12472] gi|34102922|gb|AAQ59286.1| DNA polymerase subunits gamma and tau [Chromobacterium violaceum ATCC 12472] Length = 639 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS R+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +Q+ S D L + + N TG +D IR + Sbjct: 65 ETGTTAEPCGECQ------ACRQIDSGRFVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTMGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +++ + L + Sbjct: 170 CLQFSLRNMTPQQVSSHLAHM 190 >gi|228949834|ref|ZP_04112044.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809892|gb|EEM56303.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 553 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G I++ + + HA +F G +G GK T+ A + +N Sbjct: 12 RKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCENL 71 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ C + SHA D L + + N V++IR IR + Sbjct: 72 NNEGEPCNECSQ--CKAI--RGNSHA--DVLEIDAASNN---------GVEQIREIREQV 116 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SRC Sbjct: 117 AYAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPTTIISRCQ 176 Query: 183 SIKFNSLSENNLYKAL 198 F + ++ + L Sbjct: 177 RFDFRRIGPRDIIERL 192 >gi|60682540|ref|YP_212684.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343] gi|60493974|emb|CAH08766.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343] Length = 614 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 NLTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIF----DQVVS 228 >gi|260437834|ref|ZP_05791650.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus DSM 2876] gi|292809859|gb|EFF69064.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus DSM 2876] Length = 523 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L S R+ HA LF G +G GK T+ A V Sbjct: 8 RKWRPDTFSDVKGQEHIVRTLKNQIESDRVGHAYLFCGTRGTGKTTIAKILAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C K +A+ + + + + + N VD IR+IR ++ Sbjct: 68 IDGSPCGEC------AVCKAIANGSSLNVIEIDAASNNG---------VDNIRQIRDEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPVTIMSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S + + L +L Sbjct: 173 YDFKRISVDTIEARLREL 190 >gi|239999003|ref|ZP_04718927.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae 35/02] gi|240014087|ref|ZP_04721000.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae DGI18] gi|240016521|ref|ZP_04723061.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA6140] gi|240080645|ref|ZP_04725188.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA19] gi|240115744|ref|ZP_04729806.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID18] gi|240121648|ref|ZP_04734610.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID24-1] gi|268594851|ref|ZP_06129018.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02] gi|268596769|ref|ZP_06130936.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19] gi|268601422|ref|ZP_06135589.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID18] gi|293399027|ref|ZP_06643192.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62] gi|268548240|gb|EEZ43658.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02] gi|268550557|gb|EEZ45576.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19] gi|268585553|gb|EEZ50229.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID18] gi|291610441|gb|EFF39551.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62] Length = 707 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|75812745|ref|YP_320362.1| DNA polymerase III subunit delta' [Anabaena variabilis ATCC 29413] gi|75705501|gb|ABA25173.1| DNA polymerase III, delta prime subunit [Anabaena variabilis ATCC 29413] Length = 307 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 8/216 (3%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGE-QGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G + L++ ++ A LF E +G+GK + +A +L S + Sbjct: 8 EIIGQHTAKLLLTEAIERNQIAPAYLFSSEVEGVGKGKIALAFANAILSRGSRSAMAKHL 67 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTG 129 P + D L + + T + ++V I V+++R + FLS +A G Sbjct: 68 PPPKGDAQGTASAGESKHLDILQIKPTYTENTSQQKSVPAIRVEQMREVIEFLSTSAVEG 127 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V++I D +N AAN LLK+LEE P+ FILIS +L TI+SRC I F L Sbjct: 128 KQKVVIIYEADMLNPTAANKLLKTLEE-PKTGTFILISSYPQKLLPTIKSRCQIIPFQRL 186 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 ++ + L+ +I ++ + I++ GS +AI Sbjct: 187 TDEEVISVLKDQQI---EATEKILAISS-GSPGQAI 218 >gi|167587030|ref|ZP_02379418.1| DNA polymerase III subunits gamma and tau [Burkholderia ubonensis Bu] Length = 371 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|59801160|ref|YP_207872.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA 1090] gi|240112990|ref|ZP_04727480.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae MS11] gi|240118040|ref|ZP_04732102.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID1] gi|240123594|ref|ZP_04736550.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID332] gi|268599069|ref|ZP_06133236.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae MS11] gi|268603753|ref|ZP_06137920.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID1] gi|268682222|ref|ZP_06149084.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID332] gi|59718055|gb|AAW89460.1| putative DNA polymerase III tau and gamma chains [Neisseria gonorrhoeae FA 1090] gi|268583200|gb|EEZ47876.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae MS11] gi|268587884|gb|EEZ52560.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID1] gi|268622506|gb|EEZ54906.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID332] Length = 707 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|121604575|ref|YP_981904.1| DNA polymerase III subunits gamma and tau [Polaromonas naphthalenivorans CJ2] gi|120593544|gb|ABM36983.1| DNA polymerase III, subunits gamma and tau [Polaromonas naphthalenivorans CJ2] Length = 605 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G + + L +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKNFSEMVGQSHVVQALGNALGTGRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + P +C D C + + S D+ L + N VDEI Sbjct: 65 TGPDGQGGITATPCGVC--DAC----RDIDSGRFVDYTELDAASN---------RGVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + A NA+LK+LEEPP+ + F+L + + + Sbjct: 110 AQLLEQAVYKPVVGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPA 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L Q+ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLVQV 195 >gi|265766021|ref|ZP_06094062.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16] gi|263253689|gb|EEZ25154.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16] gi|301164016|emb|CBW23572.1| putative DNA polymerase III [Bacteroides fragilis 638R] Length = 614 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 NLTADGEACNECESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIF----DQVVS 228 >gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|253572655|ref|ZP_04850056.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|251837787|gb|EES65877.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] Length = 619 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L + ++ HA LF G +G+GK T +A + P Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 69 TTDGEACNEC--ESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|228988775|ref|ZP_04148851.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770955|gb|EEM19445.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 548 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G I++ + + HA +F G +G GK T+ A + +N Sbjct: 7 RKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCENL 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ C + SHA D L + + N V++IR IR + Sbjct: 67 NNEGEPCNECSQ--CKAI--RGNSHA--DVLEIDAASNN---------GVEQIREIREQV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 112 AYAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F + ++ + L Sbjct: 172 RFDFRRIGPRDIIERL 187 >gi|224825855|ref|ZP_03698959.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum 2002] gi|224602079|gb|EEG08258.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum 2002] Length = 657 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA L G +G+GK T+ A + Sbjct: 26 VLARKWRPKRFADLVGQEHVVRALTNALAGERLHHAYLLTGTRGVGKTTIARILAKSLNC 85 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C+ +Q+ + D L + + N TG +D IR + Sbjct: 86 EAGVGAEPCGECS------ACRQIDAGRFVDLLEIDAASN--TG-------IDNIREVLE 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 131 NAQYAPTSGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 190 Query: 181 CLSIKFNSLSENNL 194 CL +++ + Sbjct: 191 CLQFSLRNMTPQQV 204 >gi|78223522|ref|YP_385269.1| DNA polymerase III subunit delta' [Geobacter metallireducens GS-15] gi|78194777|gb|ABB32544.1| DNA polymerase III, delta prime subunit [Geobacter metallireducens GS-15] Length = 318 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 21/181 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + L + SG+ HA LFEG G GK T + D Sbjct: 5 RVIGQDTPVNVLRRALRSGKTAHAYLFEGIGGCGKGTTALAFVEAAFCGRD--------- 55 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C P ++MA+ D + + P G + I +D++R ++ L L Sbjct: 56 --DGCGTCPSCRKMATLQHPDL----HPVEPD-GAF---IKIDQVRELQRELVLRPIEAP 105 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + +I D +N A NALLK+LEEPP L IL++ +L TIRSRC ++F L Sbjct: 106 LKACIIRDADRLNPAAGNALLKTLEEPPGNALMILLTTNLDGVLPTIRSRCQLLRFAPLP 165 Query: 191 E 191 E Sbjct: 166 E 166 >gi|241667459|ref|ZP_04755037.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876006|ref|ZP_05248716.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842027|gb|EET20441.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 389 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCLA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +S+++ L L + I + D++ A GS+ A+ +L Sbjct: 173 LHLKHISQSDIKDQLKVVLNKENINSDEQSLDYIAYHAKGSLRDALSLL 221 >gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 100/237 (42%), Gaps = 28/237 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 FD V QR + + L R+ HALLF G +G+GK T R L Sbjct: 15 FDEVVGQR-----PVTQTLKNAIAKDRVAHALLFAGPRGVGKTTTA-RILAKALNCE--- 65 Query: 66 KAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 R +PCS +A+ D L + + N +DE+R +R + Sbjct: 66 ----RGRTSEPCSECASCNAIATGRSVDCLEIDGASN---------RGIDEVRELREIVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +VI+ID V + A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 113 YAPSRDKCKVIIIDEVHMLTEPAFNALLKTLEEPPPGVIFILATTHAHKIPPTILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F L + + L+Q+ + D A ++ARA + D ++ I Sbjct: 173 HDFRRLGQTEILPRLQQIACEEGAAVSD----GAMKAIARAAEGSLRDAQSLLDQAI 225 >gi|257874233|ref|ZP_05653886.1| DNA polymerase III delta prime subunit [Enterococcus casseliflavus EC10] gi|257808397|gb|EEV37219.1| DNA polymerase III delta prime subunit [Enterococcus casseliflavus EC10] Length = 310 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LFEG++G GK L A + +AP C+ Sbjct: 24 GRIAHAYLFEGDKGTGKHELSLWLAKRLFCTNVQEEAPCGTCS----------------- 66 Query: 91 DFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + L ++ +P + +I VD+IR+++ S + ++ ++ D MN +AA Sbjct: 67 NCLRIAQGEHPDVIQIEPDGQMIKVDQIRQLQEEFSKSGFESRLKIFILSQADKMNNSAA 126 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N+LLK LEEP L IL + + IL TI+SRC I F+ LS+ L + L++ Sbjct: 127 NSLLKFLEEPVGNFLAILETESLGRILPTIQSRCQIIHFSPLSKEKLQEKLQE 179 >gi|255003011|ref|ZP_05277975.1| DNA polymerase III subunit gamma [Anaplasma marginale str. Puerto Rico] gi|255004137|ref|ZP_05278938.1| DNA polymerase III subunit gamma [Anaplasma marginale str. Virginia] Length = 290 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 30/153 (19%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGK+ L +A HV + + P D + + Sbjct: 24 LLCGRRGIGKSRLSRAFAKHVTGSVELESDP----------------------DVMLIDN 61 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + P I+VD++R +R+FL +TA +V+++D +D ++ + NA+LK+LEEP Sbjct: 62 ATEP--------ISVDKVREMRHFLHMTAIRSKRKVVIVDSIDDLSVSPTNAMLKTLEEP 113 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P L +LISH + ++SRC+ + + LS Sbjct: 114 PAGSLILLISHNVHRVPVVVKSRCVILPLHELS 146 >gi|254994877|ref|ZP_05277067.1| DNA polymerase III subunit gamma [Anaplasma marginale str. Mississippi] Length = 290 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 30/153 (19%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGK+ L +A HV + + P D + + Sbjct: 24 LLCGRRGIGKSRLSRAFAKHVTGSVELESDP----------------------DVMLIDN 61 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + P I+VD++R +R+FL +TA +V+++D +D ++ + NA+LK+LEEP Sbjct: 62 ATEP--------ISVDKVREMRHFLHMTAIRSKRKVVIVDSIDDLSVSPTNAMLKTLEEP 113 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P L +LISH + ++SRC+ + + LS Sbjct: 114 PAGSLILLISHNVHRVPVVVKSRCVILPLHELS 146 >gi|254490491|ref|ZP_05103677.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxidans DMS010] gi|224464235|gb|EEF80498.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxydans DMS010] Length = 569 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L R+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKSFEEVVGQQHVLRALINGLDQNRLHHAFLFSGTRGVGKTTLARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C C+ ++ S D + + + K VD+ R + Sbjct: 65 EQGVSSTPCGVCQS--CT----EVDSGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 110 NVQYAPSQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L ++L LEQ I + + AA GS+ A+ +L Sbjct: 170 CLQFNLRRLELTQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLL 221 >gi|146293398|ref|YP_001183822.1| DNA polymerase III subunits gamma and tau [Shewanella putrefaciens CN-32] gi|145565088|gb|ABP76023.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens CN-32] Length = 957 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCG------SCVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL SL++ + L Sbjct: 170 CLQFNLKSLTQQEIGTQL 187 >gi|257876797|ref|ZP_05656450.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20] gi|257810963|gb|EEV39783.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20] Length = 306 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LFEG++G GK L A + +AP C+ Sbjct: 20 GRIAHAYLFEGDKGTGKHELSLWLAKRLFCTNVQEEAPCGTCS----------------- 62 Query: 91 DFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + L ++ +P + +I VD+IR+++ S + ++ ++ D MN +AA Sbjct: 63 NCLRIAQGEHPDVIQIEPDGQMIKVDQIRQLQEEFSKSGFESRLKIFILSQADKMNNSAA 122 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N+LLK LEEP L IL + + IL TI+SRC I F+ LS+ L + L++ Sbjct: 123 NSLLKFLEEPVGNFLAILETESLGRILPTIQSRCQIIHFSQLSKEKLQEKLQE 175 >gi|217969820|ref|YP_002355054.1| DNA polymerase III subunits gamma/tau [Thauera sp. MZ1T] gi|217507147|gb|ACK54158.1| DNA polymerase III, subunits gamma and tau [Thauera sp. MZ1T] Length = 716 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGTLVGQEHVVRALTHALATGRLHHAWLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C + + + D++ + + N V+E+ + Sbjct: 65 ETGITAEPCGIC--DAC----RAIDADRFPDYVEMDAASN---------RGVEEMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + ++ L ++ Sbjct: 170 CLQFNLKQMPQGHIVDHLTRI 190 >gi|254479294|ref|ZP_05092635.1| DNA polymerase III, delta' subunit domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034769|gb|EEB75502.1| DNA polymerase III, delta' subunit domain protein [Carboxydibrachium pacificum DSM 12653] Length = 323 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 16/174 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE+I K ++ +A LF GE+G+GK L +A V N + P Sbjct: 3 RVYGHEEILKVFRNIINQNKISNAYLFVGEEGLGKRFLAEYFAMMV--NCKGNDKPCF-- 58 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS VK + F+ + P+ I V+ +R I +++ + + Sbjct: 59 ---KCSSCVKMLKKSHPDVFI-----IEPEGDS----IKVETVRYINAEINIKPYESFKK 106 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 V +ID D M A NA LK+LEEPP LFILIS +L T+ SRC ++F Sbjct: 107 VFIIDRADKMTPAAQNAFLKTLEEPPLYGLFILISPQIEALLPTVVSRCNVVRF 160 >gi|261886243|ref|ZP_06010282.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 537 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 17/195 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + LS SGR+ HA LF G +G GK + +A +L Sbjct: 8 YRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLCEQGIG 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P +C C MA+ H D + + + + K +D+IR + Sbjct: 68 SHPCEVCAN--CV-----MANEGRHLDIIEMDAASHRK---------IDDIRELIEHTKY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + ++ +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 112 SPSSARFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHF 171 Query: 185 KFNSLSENNLYKALE 199 +F +S++++ K LE Sbjct: 172 RFKPISKHDILKHLE 186 >gi|254882691|ref|ZP_05255401.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA] gi|319641967|ref|ZP_07996634.1| DNA polymerase III [Bacteroides sp. 3_1_40A] gi|254835484|gb|EET15793.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA] gi|317386392|gb|EFV67304.1| DNA polymerase III [Bacteroides sp. 3_1_40A] Length = 603 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 9 RKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 69 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|228950058|ref|ZP_04112243.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809585|gb|EEM56021.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 326 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA ++EG +GIGK + YA +L N F+ P C C+ +H D +Y Sbjct: 28 HAYIYEGNKGIGKYQVALLYAKTLLCNNGFNSEPCHTCRN--CTRI--DTGNHP--DIIY 81 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + P I ++I ++ S + ++ +I+ + M NAAN+LLK L Sbjct: 82 IK----PDGAS----IKKEQIEELQKEFSYASFETGKKIYIIENAEKMTANAANSLLKFL 133 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 EEP + IL++ S +L+TI SRC I+F+ +S + +AL + I G ++K Sbjct: 134 EEPESDCIAILLTERSNALLNTIISRCQLIRFSPISPKKVQEALTEQLIFGEEAK 188 >gi|254433563|ref|ZP_05047071.1| DNA polymerase III, delta subunit, C terminal domain family [Nitrosococcus oceani AFC27] gi|207089896|gb|EDZ67167.1| DNA polymerase III, delta subunit, C terminal domain family [Nitrosococcus oceani AFC27] Length = 322 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 15/158 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 RM HA+L G +G+GK + +A +++Q + ++ + C C+ Q+A Sbjct: 8 RMPHAILLMGPEGMGKRS----FASNLIQALSCEYPQKGGHGCGS--CAGCRLQLAGSHP 61 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + +L P+ GK I+V++IR++ L+L A ++ ++I P + M +AAN+ Sbjct: 62 DNL-----TLFPREGK--QTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSAANS 114 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 LLK LEEPP + + +LI+ AS + TIRSRC + F Sbjct: 115 LLKILEEPPGRTVLLLITSASLRLPITIRSRCQQLFFT 152 >gi|319779571|ref|YP_004130484.1| DNA-directed DNA polymerase [Taylorella equigenitalis MCE9] gi|317109595|gb|ADU92341.1| DNA-directed DNA polymerase [Taylorella equigenitalis MCE9] Length = 347 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 24/182 (13%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNP----------- 62 H DI K Q R HA L G++GIGK A +L NP Sbjct: 10 HLDIAKIWIQ--SKDRFSHAWLIYGQEGIGKFDFCLTAAKTILCKNANPFACNCCSSCHL 67 Query: 63 --DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG-KWRTVITVDEIRRIR 119 + R+ P+ Q+++ L ++ S NP TG K I +D+IR + Sbjct: 68 MDKGNHIDFRVVVPESLREHY-QISNKELEEY----SSFNPSTGGKPSLEIKIDQIRELE 122 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F +L+ + G +VI++ PV+ +N+ ++N+LLK LEEP +F+L +HA +L TI S Sbjct: 123 EFFTLSPSLGSSKVIVLGPVETLNQASSNSLLKILEEPLGDTVFLLFTHAIQKVLPTILS 182 Query: 180 RC 181 RC Sbjct: 183 RC 184 >gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] Length = 587 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 12 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 70 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 175 QRYNFKRISNDQLVNRMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 233 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 234 AKINYQDTLAITGYADQVKI 253 >gi|167626879|ref|YP_001677379.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596880|gb|ABZ86878.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 551 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCLA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +S+++ L L + I + D++ A GS+ A+ +L Sbjct: 173 LHLKHISQSDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLL 221 >gi|150004786|ref|YP_001299530.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482] gi|149933210|gb|ABR39908.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482] Length = 603 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L +G++ HA LF G +G+GK T +A + Q P Sbjct: 9 RKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +V++IR + + Sbjct: 69 TAEGEACNQC--ESCLAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 FN + Sbjct: 174 IYDFNRIG 181 >gi|127513163|ref|YP_001094360.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica PV-4] gi|126638458|gb|ABO24101.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica PV-4] Length = 1113 Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCAS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL SL+ + L L Q ++ D + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTLDEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSL 220 >gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] Length = 587 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 12 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 70 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 175 QRYNFKRISNDQLVNRMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 233 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 234 AKINYQDTLAITGYADQVKI 253 >gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM 6192] gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM 6192] Length = 510 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 41/297 (13%) Query: 5 AFDPVYNQR-------LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH 57 +F+ N+R L G E + L+ +GR+ HA LF G +G+GK + A Sbjct: 2 SFEVTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTS-----AAR 56 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 +L + V P+PC K+++ D + + + N +V+++ Sbjct: 57 ILAKALNCEQGV---TPEPCGTCTSCKEISQGTAIDVIEIDGASN---------TSVNDV 104 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R IR + ++V +ID V ++ +A NALLK++EEPP V+FI + + + Sbjct: 105 RVIREEVLFAPGKARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPA 164 Query: 176 TIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 TIRSRC F +S L +A ++++ + ++ A GS+ A + Sbjct: 165 TIRSRCQQYHFRLISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLF--- 221 Query: 232 CDKIIS------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 D+++S SY LI +++Q + + ++ K A D + E ++ + Sbjct: 222 -DQVVSFSEGRLSYA-LIQEKLGLVGFERLQAVVEACAREEVKGALDLVHEILMSGV 276 >gi|253999384|ref|YP_003051447.1| DNA polymerase III subunits gamma and tau [Methylovorus sp. SIP3-4] gi|253986063|gb|ACT50920.1| DNA polymerase III, subunits gamma and tau [Methylovorus sp. SIP3-4] Length = 610 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ C + D L + + N + VD +R + Sbjct: 65 ETGITAHPCGVCSA--CVDIDRGR----FVDMLEVDAASNTQ---------VDSMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R+A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTVGRFKVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +S ++L + L + I + AA GS+ A+ +L Sbjct: 170 CLQFNLRQMSTPAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLL 221 >gi|85057397|ref|YP_456313.1| DNA polymerase III, gamma/tau subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789502|gb|ABC65234.1| DNA polymerase III, gamma/tau subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 653 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 108/236 (45%), Gaps = 34/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E I + L +++H LF G +G GK TL F A + L Sbjct: 8 RKYRPQTFADVVGQEIIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKAINCL-- 65 Query: 62 PDFSKAPVR---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +P++ C+ C F K A+ + + SY+ VDEIR + Sbjct: 66 -----SPIQGEAFCSCHFCQNFAK--ANTDITEIDGASYN------------GVDEIREL 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + A+ G ++V +ID V + NA NALLK LEEPP+ V+FILI+ I TI Sbjct: 107 QDKAQYKAHAGKYKVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIF 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDS---KRDFVKIAAY---GSVARAIKIL 228 SR S F +L+ N+ L KI ++ D +K AY G + A+ +L Sbjct: 167 SRSQSFAFENLNLKNITAQL--TKIAALENMFITEDAIKSIAYHSEGGMRNALSLL 220 >gi|330829692|ref|YP_004392644.1| DNA polymerase III subunit delta' [Aeromonas veronii B565] gi|328804828|gb|AEB50027.1| DNA polymerase III, delta' subunit [Aeromonas veronii B565] Length = 315 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 16/159 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPFVK 82 LSQ SGR+ HA L G+ G+GK L R A H+ Q PD + P C+ C F K Sbjct: 12 LSQTAQSGRLGHAWLLLGDPGLGKEQLAERLARLHLCQQPDRGE-PCGQCHS--CQLFDK 68 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 +H D ++ + KT I V+ IR I L +A G +V++I + M Sbjct: 69 --GNHP--DLGTITR--DSKT------IGVEAIREICTRLQGSAQLGRGKVVIIPDAERM 116 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +AANALLK+LEEP L +LI+ +L TI SRC Sbjct: 117 TESAANALLKTLEEPAGDSLLLLIASQVSRLLPTILSRC 155 >gi|269797675|ref|YP_003311575.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM 2008] gi|269094304|gb|ACZ24295.1| DNA polymerase III gamma/tau subunits-like protein [Veillonella parvula DSM 2008] Length = 346 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 23/210 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA- 67 Y + G + I+ LS+ + H+LLF GE G+GK + +L FS+ Sbjct: 2 TYFDSIIGQDSIKAHLSELVSRNALPHSLLFYGESGLGKLDMAIGLTSLLLGRQVFSQPK 61 Query: 68 ---------PVRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDE-I 115 R+ N D K++ + L ++ ++ + P +T + V++ Sbjct: 62 GESYLAEVKEARLANGDT----EKRIEAEGLPIYMDKGDAFWIRPM----KTTLKVEQWY 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ LS+ N RV++++ N ANA+LK++EEPP++V FI+I++ T+L Sbjct: 114 SLLQDHLSVAGNGN--RVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLP 171 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 TI SRC+ + FNS+ + + L I G Sbjct: 172 TIISRCMGVGFNSVDVDTIRTVLVARGITG 201 >gi|313205591|ref|YP_004044768.1| DNA polymerase iii subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|312444907|gb|ADQ81262.1| DNA polymerase III subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|315022679|gb|EFT35704.1| DNA polymerase III subunits gamma and tau [Riemerella anatipestifer RA-YM] gi|325334980|gb|ADZ11254.1| DNA polymerase III, delta' subunit [Riemerella anatipestifer RA-GD] Length = 373 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 29/240 (12%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G I++ L + + R+ HA LF GE G G L YA +L+ + KA ++ Sbjct: 4 EAVIGQNKIKQTLLESIDNNRVSHAQLFLGESGYGTLALALAYAQEILKREN-EKAATKV 62 Query: 72 CNPDPCS-----PFVKQMASHALHDFLYLSYS----LNPKTG--KW---------RTVIT 111 + + P + ++ F + ++ NP + W + I+ Sbjct: 63 EHLNHLDVHFSFPVFRDDKGKSVSSFFFDTWREMMLKNPYSEHHDWVNQLNAENKQLYIS 122 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VDEI SL + G ++++I D M +AAN LK LEEPP+K + IL +++S Sbjct: 123 VDEILDKSEKFSLKSFEGGTKILIIWNADKMREDAANKFLKFLEEPPEKTIIILTANSSE 182 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 +L TI SRC I+ + E +L + + L S D +K A G+ A+K++ Sbjct: 183 VMLQTILSRCQIIQVPRIEEKDLEEGIRHLT-----SDEDKIKEVLHQAQGNYNTALKLI 237 >gi|156975356|ref|YP_001446263.1| DNA polymerase III subunits gamma and tau [Vibrio harveyi ATCC BAA-1116] gi|156526950|gb|ABU72036.1| hypothetical protein VIBHAR_03087 [Vibrio harveyi ATCC BAA-1116] Length = 736 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 47/325 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITANPCGEC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--------- 230 +S +++++ LE+ ++ + AA GS+ A+ + Sbjct: 173 FHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNGTI 232 Query: 231 ------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLA------SNGVEWDGLLQQL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQ 303 ++ + A AL L++A A+ Sbjct: 286 ASQLHRVAMYQALPSTLDQAQPDAE 310 >gi|118475756|ref|YP_892561.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus subsp. fetus 82-40] gi|118414982|gb|ABK83402.1| DNA polymerase III gamma/tau subunit [Campylobacter fetus subsp. fetus 82-40] Length = 529 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 17/195 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + LS SGR+ HA LF G +G GK + +A +L Sbjct: 8 YRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLCEQGIG 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P +C C MA+ H D + + + + K +D+IR + Sbjct: 68 SHPCEVCAN--CV-----MANEGRHLDIIEMDAASHRK---------IDDIRELIEHTKY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + ++ +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 112 SPSSARFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHF 171 Query: 185 KFNSLSENNLYKALE 199 +F +S++++ K LE Sbjct: 172 RFKPISKHDILKHLE 186 >gi|226309651|ref|YP_002769545.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis NBRC 100599] gi|226092599|dbj|BAH41041.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis NBRC 100599] Length = 565 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 15/186 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E + L R+ HA LF G +G GK + A V Sbjct: 8 RVYRPQTFQDVVGQEHVTTTLRNALRENRLSHAYLFNGPRGTGKTSAAKIMAKAVNCEQP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C + +++ ++ D L + + N V+EIR IR + Sbjct: 68 IDGEPCNQC--DTC----RAISNGSVTDVLEIDAASNRG---------VEEIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 FAPSDVRYKVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSL 189 F+ + Sbjct: 173 FDFHRI 178 >gi|226197211|ref|ZP_03792788.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei Pakistan 9] gi|225930590|gb|EEH26600.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei Pakistan 9] Length = 531 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCR------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|271499625|ref|YP_003332650.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech586] gi|270343180|gb|ACZ75945.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii Ech586] Length = 675 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQC--DTC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L +L + LEQ ++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDAEQIRQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSL 220 >gi|256370922|ref|YP_003108746.1| DNA polymerase III, subunits gamma and tau [Acidimicrobium ferrooxidans DSM 10331] gi|256007506|gb|ACU53073.1| DNA polymerase III, subunits gamma and tau [Acidimicrobium ferrooxidans DSM 10331] Length = 635 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 115/275 (41%), Gaps = 30/275 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E + + L + G + HA LF G +G GK + A + Sbjct: 10 RRFRPRRFGEVRGQERVTETLRRAVAEGHVSHAYLFSGPRGTGKTSTARILAMALNCEAP 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C V+ ++ D L + N VD IR I ++ Sbjct: 70 VDGEPCLACAS--CEAVVRGSSA----DVEELDAASN---------SGVDSIRWITQTVA 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 A G WRV ++D V +++ A+NALLK+LEEPP V+FIL + +L+T+RSR Sbjct: 115 -AAPVGRWRVYIVDEVHMLSQAASNALLKTLEEPPAHVVFILATTNPAKVLATVRSRTQH 173 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH--YDCDKIIS 237 F L + + + + LE L D +V+ GS + +L +++ Sbjct: 174 FAFRLLDDASVDALVAEVLEALGASLSDEALAYVRRRGGGSARDTLSVLEQVLALGGVVN 233 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 D A+ Q IAD L+ +IA D Sbjct: 234 DAAD--------GAVALAQAIADGDLASAVRIASD 260 >gi|325474698|gb|EGC77884.1| DNA polymerase III [Treponema denticola F0402] Length = 468 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 23/223 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G E + L + +G++ HA LF G +G GK T R VL + ++ Sbjct: 12 PQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGK-TSSARILAKVL---NCAEG 67 Query: 68 PVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P P PC +++ + + D + + + N +V+++R+I+ + Sbjct: 68 P----RPTPCGHCTSCEEITAGSCLDVIEIDGASN---------TSVNDVRQIKDEILFP 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 N+ +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SRC Sbjct: 115 PNSNRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFN 174 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 F +S L +AL +L I D ++ A GSV A Sbjct: 175 FKLVSIEILKQALADAAAELGISADDEALYWIAREATGSVRDA 217 >gi|306833147|ref|ZP_07466277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis ATCC 700338] gi|304424721|gb|EFM27857.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis ATCC 700338] Length = 559 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|325977937|ref|YP_004287653.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177865|emb|CBZ47909.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 559 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVIFILATTELHKIPTTILSRVQRFEFKAI 177 >gi|319943556|ref|ZP_08017838.1| DNA-directed DNA polymerase III subunit delta' [Lautropia mirabilis ATCC 51599] gi|319743371|gb|EFV95776.1| DNA-directed DNA polymerase III subunit delta' [Lautropia mirabilis ATCC 51599] Length = 354 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 13/158 (8%) Query: 44 GIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-LNP 101 GIGK A G + + APV+ C C+ K AS DF L + Sbjct: 36 GIGKGEFARALAQGLLCEQLPRPPAPVQACGQ--CA-ACKWFASGHHPDFRLLELAPAES 92 Query: 102 KTGKWRTV--------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 ++ K R I++D++R + F++ T+ G+ RV+++DP + ++ AANALLK Sbjct: 93 RSAKGREAGQGARAWEISIDQVRELESFITTTSARGHARVVLVDPAETLSTPAANALLKM 152 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 LEEP + F+L++H + +T+RSRC ++ SE Sbjct: 153 LEEPGENTWFLLVTHLPGQMPATVRSRCRAVAVPQPSE 190 >gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] Length = 587 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 12 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 70 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 175 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 233 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 234 AKINYQDTLAITGYADQVKI 253 >gi|311028952|ref|ZP_07707042.1| DNA polymerase III subunits gamma and tau [Bacillus sp. m3-13] Length = 563 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 89/196 (45%), Gaps = 17/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G E I K L + HA LF G +G GK + A V + Sbjct: 8 RVFRPQTFADVVGQEHITKTLQNALLQQKFSHAYLFSGPRGTGKTSAAKILAKAV----N 63 Query: 64 FSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 APV CN CS K + ++ D + + + N VDEIR IR + Sbjct: 64 CEHAPVAEPCNE--CSA-CKGITDGSISDVIEIDAASNN---------GVDEIRDIRDKV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++ ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 112 KYAPSSVKYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F ++ ++ L Sbjct: 172 RFDFKRITGESIVGRL 187 >gi|237746948|ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] gi|229378299|gb|EEO28390.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] Length = 597 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 29/193 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L+ SGR+HHA LF G +GIGK TL A + Sbjct: 5 VLARKYRPKNFESIVGQDHVVRALTHALESGRLHHAYLFTGTRGIGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP C + C K + S D++ + + N R I Sbjct: 65 EKGITSAPCGEC--EAC----KAIDSDRFVDYIEMDAASN---------------RGIAD 103 Query: 121 FLSLTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 L L Y ++V MID V + A NA+LK+LEEPP+ V FIL + I Sbjct: 104 MLQLLEQAVYAPTAARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIP 163 Query: 175 STIRSRCLSIKFN 187 T+ SRCL +FN Sbjct: 164 VTVLSRCL--QFN 174 >gi|222475031|ref|YP_002563446.1| DNA polymerase III subunit gamma [Anaplasma marginale str. Florida] gi|222419167|gb|ACM49190.1| DNA polymerase III subunit gamma [Anaplasma marginale str. Florida] Length = 296 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 30/153 (19%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGK+ L +A HV + + P D + + Sbjct: 30 LLCGRRGIGKSRLSRAFAKHVTGSVELESDP----------------------DVMLIDN 67 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + P I+VD++R +R+FL +TA +V+++D +D ++ + NA+LK+LEEP Sbjct: 68 ATEP--------ISVDKVREMRHFLHMTAIRSKRKVVIVDSIDDLSVSPTNAMLKTLEEP 119 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P L +LISH + ++SRC+ + + LS Sbjct: 120 PAGSLILLISHNVHRVPVVVKSRCVILPLHELS 152 >gi|42528086|ref|NP_973184.1| DNA polymerase III subunits gamma and tau [Treponema denticola ATCC 35405] gi|41819131|gb|AAS13103.1| DNA polymerase III, gamma and tau subunits, putative [Treponema denticola ATCC 35405] Length = 612 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 23/223 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G E + L + +G++ HA LF G +G GK T R VL + ++ Sbjct: 12 PQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGK-TSSARILAKVL---NCAEG 67 Query: 68 PVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P P PC +++ + + D + + + N +V+++R+I+ + Sbjct: 68 P----RPTPCGHCTSCEEITAGSCLDVIEIDGASN---------TSVNDVRQIKDEILFP 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 N+ +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SRC Sbjct: 115 PNSNRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFN 174 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 F +S L +AL +L I D ++ A GSV A Sbjct: 175 FKLVSIEILKQALADAAAELGISADDEALYWIAREATGSVRDA 217 >gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] Length = 583 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYKDTLAITGYADQVKI 249 >gi|77165136|ref|YP_343661.1| DNA polymerase III subunit delta' [Nitrosococcus oceani ATCC 19707] gi|76883450|gb|ABA58131.1| DNA polymerase III, delta prime subunit [Nitrosococcus oceani ATCC 19707] Length = 337 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 15/158 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 RM HA+L G +G+GK + +A +++Q + ++ + C C+ Q+A Sbjct: 23 RMPHAILLMGPEGMGKRS----FASNLIQALSCEYPQKGGHGCGS--CAGCRLQLAGSHP 76 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + +L P+ GK I+V++IR++ L+L A ++ ++I P + M +AAN+ Sbjct: 77 DNL-----TLFPREGK--QTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSAANS 129 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 LLK LEEPP + + +LI+ AS + TIRSRC + F Sbjct: 130 LLKILEEPPGRTVLLLITSASLRLPITIRSRCQQLFFT 167 >gi|294674380|ref|YP_003574996.1| putative DNA polymerase III, delta prime subunit [Prevotella ruminicola 23] gi|294473528|gb|ADE82917.1| putative DNA polymerase III, delta prime subunit [Prevotella ruminicola 23] Length = 370 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 31/269 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--P 62 +FD V G ++ E+ L Q R+ HAL+ G QG GK L +A ++L N P Sbjct: 2 SFDEV-----IGQKEAEERLLQLVREERLPHALMLCGPQGCGKLPLAVAFACYLLDNGTP 56 Query: 63 DFSKAPVRMCNPDP--CSPFVKQMASHALH-----DFLYLSYSLNPK-----TGKWRT-- 108 ++ +PD P +K + A H DF + L + +W T Sbjct: 57 SAKAMLAKLEHPDLHFTYPTIKLPSMGAEHKPVSDDFAKDWHELVMRGLYFTMEEWMTAM 116 Query: 109 -------VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 +IT E + LSL ++ G ++V +I + MN AN LLK +EEPPQ+ Sbjct: 117 GAENQQAIITAGESDDLVRKLSLKSSQGGYKVSVIWLPERMNIECANKLLKLIEEPPQQT 176 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +FI++ +L TIRSR I +S + +AL + + + D ++A GS Sbjct: 177 VFIMVCEEPDKLLETIRSRVQRIDVKKISNEAIEQALIEKRGISADDAHRIARLAN-GSW 235 Query: 222 ARAIKILHYDCDK--IISSYIDLIHIPRQ 248 +A+ L + + Y+ L+ + Q Sbjct: 236 IKALDELQVGSENELFLDMYVMLMRLAYQ 264 >gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] Length = 583 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYKDTLAITGYADQVKI 249 >gi|295108643|emb|CBL22596.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 329 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 18/213 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+DI K L + ++ H+ +F G G GK + YA LQ P + C Sbjct: 7 IIGHKDIVKHLQNAIKTEKISHSYIFTGRPGSGKKLIATTYA-MTLQCEAGGTEPCQKC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D C K+ D + +++ P T I++DEIR ++ + +++ + Sbjct: 65 -DSC----KKALGKNHPDIIMVNHE-KPGT------ISIDEIREQVIHDVAVKPYCSPHK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I + M A NALLK++EEPP+ + +L++ +L TIRSRC+ + + +N Sbjct: 113 IYIIPDAEMMTVQAQNALLKTIEEPPEYAVIMLLTSNIDALLPTIRSRCVRLDLKVVDDN 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARA 224 + K L E+L + + ++ D A GS+ RA Sbjct: 173 LVKKYLMERLHVPDYQAEIDAS--FAQGSIGRA 203 >gi|191639203|ref|YP_001988369.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus casei BL23] gi|190713505|emb|CAQ67511.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus casei BL23] gi|327383281|gb|AEA54757.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei LC2W] gi|327386464|gb|AEA57938.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei BD-II] Length = 565 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + + +L D + + + N VDEIR IR Sbjct: 68 ED--------GEPDNTCEICQAINNGSLTDVIEIDAASNNG---------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|289551726|ref|YP_003472630.1| DNA polymerase III subunits gamma and tau [Staphylococcus lugdunensis HKU09-01] gi|315660106|ref|ZP_07912964.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus lugdunensis M23590] gi|289181257|gb|ADC88502.1| DNA polymerase III subunits gamma and tau [Staphylococcus lugdunensis HKU09-01] gi|315495007|gb|EFU83344.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus lugdunensis M23590] Length = 576 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 27/225 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R F P + G E + + L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + + D + + + N VDEIR IR Sbjct: 68 ND----------GEPCNECAICKGITTGTNSDVIEIDAASNNG---------VDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 R F ++ N + +E+L+ + + + D+ IAA +A+A Sbjct: 169 RAQRFDFKAI---NSEQIVERLRFVADEQQIDY-DIAALEFIAKA 209 >gi|291298370|ref|YP_003509648.1| DNA polymerase III subunit delta' [Stackebrandtia nassauensis DSM 44728] gi|290567590|gb|ADD40555.1| DNA polymerase III, delta prime subunit [Stackebrandtia nassauensis DSM 44728] Length = 389 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 140/346 (40%), Gaps = 47/346 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 RL G ED + L+ + M HA LF G G G+ ++ R LQ P+ Sbjct: 8 RLIGQEDTVQTLTDAVAAATSGAAGMTHAWLFTGPPGSGR-SVAARAFAAALQCPN---- 62 Query: 68 PVRMCNPDP-CSPFVKQM---ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + C P C + +H + D + + S+ +R + Sbjct: 63 --QGCGSCPACHTVLGGTHADVTHVIPDGVTIGVSV---------------MRDLIGTAQ 105 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS-PTILS-TIRSRC 181 TG WRV++I+ D + A NALLKS+EEPP++ +F+L + +S P +S TIRSRC Sbjct: 106 RAPGTGRWRVLVIEDADRLTEAAGNALLKSIEEPPERTVFLLCAPSSNPAEISVTIRSRC 165 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 + S + + LE G D S AA G V RA K L D + Sbjct: 166 RLVPLRQPSVAAVARLLETRD--GVDPSLARLCASAAQGHVGRA-KRLATD-PQARDRRD 221 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 ++ +PRQ ++ AD ++ + A D +EI + A G + A Sbjct: 222 TVLGVPRQLSSVGACFTAADAIIEASESEATDATKGQAEREIAELETALGKGGTGKGA-- 279 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYA 346 S R +A + L+RRQ L R+ D D A Sbjct: 280 ------SKATRGNAGQIKELERRQK-MRLTRAQRDTLDRALVDLAA 318 >gi|126174787|ref|YP_001050936.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS155] gi|125997992|gb|ABN62067.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS155] Length = 1147 Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGACGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L + Sbjct: 197 CLQFNLKSLTQGEIGTQLNHI 217 >gi|117920889|ref|YP_870081.1| DNA polymerase III subunits gamma and tau [Shewanella sp. ANA-3] gi|117613221|gb|ABK48675.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. ANA-3] Length = 1040 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCG------SCVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL SL++ + L+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHI 190 >gi|56416666|ref|YP_153740.1| hypothetical protein AM435 [Anaplasma marginale str. St. Maries] gi|56387898|gb|AAV86485.1| hypothetical protein AM435 [Anaplasma marginale str. St. Maries] Length = 296 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 30/153 (19%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGK+ L +A HV + + P D + + Sbjct: 30 LLCGRRGIGKSRLSRAFAKHVTGSVELESDP----------------------DVMLIDN 67 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + P I+VD++R +R+FL +TA +V+++D +D ++ + NA+LK+LEEP Sbjct: 68 ATEP--------ISVDKVREMRHFLHMTAIRSKRKVVIVDSIDDLSVSPTNAMLKTLEEP 119 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P L +LISH + ++SRC+ + + LS Sbjct: 120 PAGSLILLISHNVHRVPVVVKSRCVILPLHDLS 152 >gi|224026026|ref|ZP_03644392.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM 18228] gi|224019262|gb|EEF77260.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM 18228] Length = 641 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 24 RKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCL 81 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 K CN + C F +Q S+ +H+ S + +V++IR + + Sbjct: 82 HPKEDGEACNECESCQAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 128 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 129 RIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQ 188 Query: 183 SIKFNSLSENNLYKALEQLKI 203 FN +S +++ + LE + + Sbjct: 189 IYDFNRISVSDMVEHLESVAL 209 >gi|254514397|ref|ZP_05126458.1| DNA polymerase III, delta prime subunit [gamma proteobacterium NOR5-3] gi|219676640|gb|EED33005.1| DNA polymerase III, delta prime subunit [gamma proteobacterium NOR5-3] Length = 331 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 12/183 (6%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P ++ L H++ L +GR+ HA+L EG G G+ L A ++L ++ Sbjct: 11 PAQSRCLPWHQETWINLQAQCANGRLPHAMLLEGTPGTGRNRLALSLARYLLCGDMSAQG 70 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 C AS A D L + + +TGK I +D IR + F + T Sbjct: 71 NCGSCK------TCTLSASGAHPDLLTV---MPAETGK---AIGIDAIREVIRFAAGTPT 118 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G +V++I P + + + A NA LK LEEP + +++S + + +TIRSRC K Sbjct: 119 LGRSKVMLISPAESLTQAAFNAFLKCLEEPSSETFIVMVSASGYPLPATIRSRCQRWKLP 178 Query: 188 SLS 190 S S Sbjct: 179 SPS 181 >gi|116495715|ref|YP_807449.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC 334] gi|116105865|gb|ABJ71007.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC 334] Length = 565 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + + +L D + + + N G VDEIR IR Sbjct: 68 ED--------GEPDNTCEICQAINNGSLTDVIEIDAASN--NG-------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|125974595|ref|YP_001038505.1| DNA polymerase III, delta prime subunit [Clostridium thermocellum ATCC 27405] gi|281419120|ref|ZP_06250137.1| DNA-directed DNA polymerase [Clostridium thermocellum JW20] gi|125714820|gb|ABN53312.1| DNA polymerase III, delta prime subunit [Clostridium thermocellum ATCC 27405] gi|281407269|gb|EFB37530.1| DNA-directed DNA polymerase [Clostridium thermocellum JW20] gi|316941713|gb|ADU75747.1| AAA ATPase [Clostridium thermocellum DSM 1313] Length = 329 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 27/222 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L ++ + R+ HA +F G +GIGK+T+ +A + MC+ Sbjct: 6 IIGQKSVVESLKRFIDNNRIGHAYIFSGPEGIGKSTVAKIFA------------SILMCD 53 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT---VITVDEIRRIRYFLSLTANTGY 130 S L + NP G T I VDEIR ++ + + Sbjct: 54 DAAVDKSCGNCRSCRLFE-----NRTNPDFGVLETRGLSIGVDEIRNLQQDICIRPLYSK 108 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +I + M A N LLK+LEEPP+ + IL + ++L TIRSR + I F Sbjct: 109 RKVYLIREAEKMTVQAQNCLLKTLEEPPEYAVIILATSNYESLLETIRSRSVRINF---- 164 Query: 191 ENNLYKALEQLKI--MGWD-SKRDFVKIAAYGSVARAIKILH 229 N + +++ + G D + DF+ A G + RA++++ Sbjct: 165 AKNTFDEVKRFIVSRAGGDFEQADFIAAYADGVIGRAVELME 206 >gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] Length = 587 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 12 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 70 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 175 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 233 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 234 AKINYQDTLAITGYADQVKI 253 >gi|294788405|ref|ZP_06753648.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri ATCC 29453] gi|294483836|gb|EFG31520.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri ATCC 29453] Length = 654 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L GR+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + + + D L + + N TG +D IR + Sbjct: 66 ENAQHGEPCGVCQ------SCRDIDAGRFVDLLEIDAASN--TG-------IDNIREVLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 111 NAQYAPTVGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 170 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +L+ +L L+ +I+ + + AA GS+ A+ +L Sbjct: 171 CLQFVLRNLTPQQVTAHLTHVLKTEQIVYEPNALALLGYAAQGSMRDALSLL 222 >gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] Length = 583 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYKDTLAITGYADQVKI 249 >gi|189468414|ref|ZP_03017199.1| hypothetical protein BACINT_04811 [Bacteroides intestinalis DSM 17393] gi|189436678|gb|EDV05663.1| hypothetical protein BACINT_04811 [Bacteroides intestinalis DSM 17393] Length = 372 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 30/294 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---------- 58 ++ + + G E ++ L Q GR+ HA LF G G+GK L YA ++ Sbjct: 1 MFFKEVIGQEAAKQRLRQEVQEGRIPHAQLFCGPSGVGKLPLAMAYARYICCPNRTDTDA 60 Query: 59 ------------LQNPD--FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKT 103 L +PD F V+ + C ++ L+ + L++ LN Sbjct: 61 CGTCPSCVKWNKLVHPDVHFVFPIVKKGKKEVCDDYIADWRHLVLNSPYFSLNHWLNEMD 120 Query: 104 GK-WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 + + +I E I LSL ++ G ++V ++ + M+ AN LLK LEEPP+K + Sbjct: 121 AENGQAIIYAKESDEIVRKLSLKSSEGGYKVTIVWLPEKMHVVCANKLLKLLEEPPEKTV 180 Query: 163 FILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVA 222 F+LIS IL TI SR + E ++ AL+Q + + +A G Sbjct: 181 FLLISETPDMILPTILSRTQRFNIRKIEETDIANALQQKYGVRPNDSFTLAHLAN-GDFI 239 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + ++ L+ + Q +++M+Q +++L ++ +FL Sbjct: 240 KALETIHLNEENELFFELFVSLMRLSYQR-KIREMKQWSEQLAGMGRERQKNFL 292 >gi|239630120|ref|ZP_04673151.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527732|gb|EEQ66733.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 566 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L +G+ HA LF G +G GK ++ A + L Sbjct: 9 RVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + + +L D + + + N G VDEIR IR Sbjct: 69 ED--------GEPDNTCEICQAINNGSLTDVIEIDAASN--NG-------VDEIRDIRDK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 112 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 171 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 172 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 227 >gi|221208413|ref|ZP_03581416.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD2] gi|221171826|gb|EEE04270.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD2] Length = 387 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] Length = 503 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 16/198 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + ++ L + + + HA +F G +G GK T R L Sbjct: 10 RKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTA-RILAKALNCLS 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C + +++ D + + +R + DEIR+IR S Sbjct: 69 HDDKPCGKC--ESCIA----VDNNSHMDVIEID------AASYRGI---DEIRKIRDAAS 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G+++V ++D + R A NALLK+LEEPP+ ++FIL + + TI SRC Sbjct: 114 YRPTMGHYKVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQV 173 Query: 184 IKFNSLSENNLYKALEQL 201 F LSE + + L+++ Sbjct: 174 FTFKPLSEGQIVEYLQRI 191 >gi|301067270|ref|YP_003789293.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei str. Zhang] gi|300439677|gb|ADK19443.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei str. Zhang] Length = 565 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + + +L D + + + N G VDEIR IR Sbjct: 68 ED--------GEPDNTCEICQAINNGSLTDVIEIDAASN--NG-------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|188534599|ref|YP_001908396.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99] gi|188029641|emb|CAO97520.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99] Length = 644 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L ++ + LE + KI + AA GS+ A+ + Sbjct: 170 CLQFHLKALDQDQIRGQLEHVLQAEKIDAETRALQLLARAADGSMRDALSL 220 >gi|168187950|ref|ZP_02622585.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C str. Eklund] gi|169294203|gb|EDS76336.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C str. Eklund] Length = 314 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 28/185 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE I+K + +G+ HA L GE GIGK+ L A VL Sbjct: 4 ENIIGHELIKKEIENSIDTGKFSHAHLIVGEDGIGKSLLAREIALKVL------------ 51 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 + D Y+ + K K R I VD IR I ++ G Sbjct: 52 ---------------GKIEDRDYVDI-IKWKIEKNRQSIGVDSIRDIIKEVNKKPFEGDK 95 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V++I + M A NALLK++EEPP VL IL+S +L TI+SRC K LS Sbjct: 96 KVVIIYNAEKMTIEAQNALLKTIEEPPNGVLIILLSENLEMMLETIKSRCQIHKLKRLSS 155 Query: 192 NNLYK 196 +++ K Sbjct: 156 SDMEK 160 >gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis 0140J] gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J] Length = 555 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 19/184 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCP-------HQV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNQCDLCQDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSSGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNL 194 + ++ Sbjct: 179 QTDI 182 >gi|254361188|ref|ZP_04977332.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica PHL213] gi|261492948|ref|ZP_05989493.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495091|ref|ZP_05991557.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092679|gb|EDN73728.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica PHL213] gi|261309257|gb|EEY10494.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311400|gb|EEY12558.1| DNA-directed DNA polymerase III delta prime subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 325 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 13/157 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + GR HHALLF+ + G+G TL ++ A +L + P C S + Q Sbjct: 12 LTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAEWLLCSQKLRHQPCLECK----SCLLMQ 67 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H DF + L P K I +D++R + Y L A G V+ I VD + Sbjct: 68 SNNHP--DF----HILEPIEDK---DIGIDQVRELIYKLQNFAQQGGNTVVYIRGVDRLT 118 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++NALLK+LEEP + V F+L + T+L+TI+SR Sbjct: 119 EASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSR 155 >gi|126454158|ref|YP_001066508.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 1106a] gi|242316585|ref|ZP_04815601.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106b] gi|126227800|gb|ABN91340.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106a] gi|242139824|gb|EES26226.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106b] Length = 825 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 28/282 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKIISSYID-LIH 244 + LE++ +I F+ AA GS+ A+ + + Y +++ + + ++ Sbjct: 183 IVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLG 242 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 Q Y M ++ D L + D E L+ + SA Sbjct: 243 TLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSA 280 >gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] Length = 583 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYQDTLAITGYADQVKI 249 >gi|253999089|ref|YP_003051152.1| DNA polymerase III subunit delta' [Methylovorus sp. SIP3-4] gi|253985768|gb|ACT50625.1| DNA polymerase III, delta prime subunit [Methylovorus sp. SIP3-4] Length = 340 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 28/208 (13%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA+L G GIGK + +L Q P +C C F + SH D Sbjct: 25 LPHAMLLRGPAGIGKLQFAQALSKALLCQQPQADGHACGVCAS--CGWFAQ--GSHP--D 78 Query: 92 FLYLS-----------YSLNPKTGKWRTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDP 138 F L+ P T K T I+V ++R + FL L++ N G R+ +I P Sbjct: 79 FRLLAPEQDQADEDAPAPAKPTTKK--TQISVAQVRELGGFLELSSHHNDGV-RIALICP 135 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +G+N +ANALLK LEEPP V+F+L++H +L TI SRC + + ++ AL Sbjct: 136 AEGLNVASANALLKMLEEPPPGVVFLLVAHQPQRLLPTITSRCRKV---DMPVPDMQGAL 192 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAIK 226 L G D V++A G A + Sbjct: 193 SWLNGQGVDQAE--VRLAYAGGSPMAAR 218 >gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] Length = 583 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYQDTLAITGYADQVKI 249 >gi|313201191|ref|YP_004039849.1| DNA polymerase III subunit delta' [Methylovorus sp. MP688] gi|312440507|gb|ADQ84613.1| DNA polymerase III, delta prime subunit [Methylovorus sp. MP688] Length = 340 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA+L G GIGK + +L Q P +C C F + SH D Sbjct: 25 LPHAMLLRGPAGIGKLQFAQALSKALLCQQPQVDGHACGVCAS--CGWFAQ--GSHP--D 78 Query: 92 FLYLS-----------YSLNPKTGKWRTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDP 138 F L+ P T K T I+V ++R + FL L++ N G R+ +I P Sbjct: 79 FRLLAPEQDQADEDAPAPAKPTTKK--TQISVAQVRELGGFLELSSHHNDGV-RIALICP 135 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +G+N +ANALLK LEEPP V+F+L++H +L TI SRC + Sbjct: 136 AEGLNVASANALLKMLEEPPPGVVFLLVAHQPQRLLPTITSRCRKV 181 >gi|291520314|emb|CBK75535.1| DNA polymerase III, gamma/tau subunits [Butyrivibrio fibrisolvens 16/4] Length = 183 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 14/189 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G ED + L +G HA +F GE+G GK L +A ++Q + R C Sbjct: 5 EIIGQEDAKNLLKNAIKTGNHSHAYIFSGEKGSGKMMLAEAFAT-MMQCENPGDDACREC 63 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 + KQ SH D +Y+ + + ++ + VD +R +I + + + + Sbjct: 64 HS------CKQALSHNNPDIIYV------RREEGKSNLGVDVVREQIVNDVGIKPYSNKY 111 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +++ + MN A NA+LK++EEPP+ + IL++ L TI SRC+ I+ S+ Sbjct: 112 KIYIVEEAERMNPQAQNAILKTIEEPPEYAIIILLTANHNAFLQTILSRCVLIQMKSIDT 171 Query: 192 NNLYKALEQ 200 ++ + Q Sbjct: 172 ESIKRFCRQ 180 >gi|229113196|ref|ZP_04242691.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] gi|228670222|gb|EEL25570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] Length = 541 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 14 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 69 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 70 -CLAP--LSNGEPCQKCANCSDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 118 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 177 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 178 QQFEFRNIP---LQAMIDRLKFISHD 200 >gi|229125265|ref|ZP_04254367.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] gi|228658191|gb|EEL13929.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] Length = 541 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 14 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 69 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 70 -CLAP--LSNGEPCQKCANCSDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 118 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 177 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 178 QQFEFRNIP---LQAMIDRLKFISHD 200 >gi|300118105|ref|ZP_07055853.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] gi|298724416|gb|EFI65110.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] Length = 536 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 9 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 64 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 65 -CLAP--LSNGEPCQKCANCSDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 113 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 172 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 173 QQFEFRNIP---LQAMIDRLKFISHD 195 >gi|288904969|ref|YP_003430191.1| DNA polymerase III, gamma and tau subunits [Streptococcus gallolyticus UCN34] gi|288731695|emb|CBI13256.1| DNA polymerase III, gamma and tau subunits [Streptococcus gallolyticus UCN34] Length = 559 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPTTILSRVQRFEFKAI 177 >gi|229051606|ref|ZP_04195076.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] gi|228721717|gb|EEL73191.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] Length = 541 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 14 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 69 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 70 -CLAP--LSNGEPCQKCANCSDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 118 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 177 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 178 QQFEFRNIP---LQAMIDRLKFISHD 200 >gi|242239033|ref|YP_002987214.1| DNA polymerase III delta prime subunit [Dickeya dadantii Ech703] gi|242131090|gb|ACS85392.1| DNA polymerase III, delta prime subunit [Dickeya dadantii Ech703] Length = 336 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 L ++ +GR HHA+L G+G+A+L + + +L + PD K+ C+ C+ Sbjct: 14 LLSWHQAGRGHHAILLHAIDGMGEASLAYAFGRWLLCRQPDGVKS-CGTCHS--CA---- 66 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + S H Y+ L P+ GK + +D +R + + + G +V+ I + + Sbjct: 67 -LMSAGTHPDWYV---LTPEKGK--LALGIDLVREVLEHVHQRSRQGGAKVVWIPQAEIL 120 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 AANALLK+LEEPP++ F+L +L+T+RSRCL ++ +E + L+ Sbjct: 121 TEAAANALLKTLEEPPEQTYFLLACREPGRLLATLRSRCLHHHLSAPAEPQGMQWLQ 177 >gi|251794180|ref|YP_003008911.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. JDR-2] gi|247541806|gb|ACS98824.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp. JDR-2] Length = 590 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P Q + G I + L R+ HA LF G +G GK T A V Sbjct: 8 RAWRPQTFQDMVGQRHIIQTLQNAIREDRVSHAYLFNGPRGTGKTTAAKVLAKAVNCERG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P C D C A H + D + + + N +DEIR IR + Sbjct: 68 PAEEPCNEC--DACRGIT---AGHIM-DVIEIDAASNRG---------IDEIRDIRDKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 YAPSEVRYKVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSLS-ENNLYKALEQLKIMGWDSKRD---FVKIAAYGSVARAIKILH 229 F +S E + E + G +++ D ++ + G + AI +L Sbjct: 173 FDFRQVSLEEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLE 222 >gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1] Length = 583 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYQDTLAITGYADQVKI 249 >gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] Length = 586 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLSTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 174 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 229 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 230 TNGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIIT 285 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 286 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNY 342 Query: 342 R 342 R Sbjct: 343 R 343 >gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] gi|149128882|gb|EDM20099.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] Length = 618 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTI--NCM 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q S+ +H+ S + +VD+IR++ + Sbjct: 67 TPTADGEACNQCESCVAFNEQR-SYNIHELDAASNN------------SVDDIRQLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N+L + I + + + A G + A+ I D+++S Sbjct: 174 IYDFNRISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIF----DQVVS 228 >gi|119897887|ref|YP_933100.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670300|emb|CAL94213.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 349 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 17/179 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV---------RMCNPDP----C 77 GR+ HALLF G G+GK L A +L + + R+ P Sbjct: 18 GRLPHALLFIGPAGLGKRDLAEMLAARLLCDSPAADGAACGRCAACAWRLAGNHPDFYHL 77 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 P A + K+ + I +++IR ++ L++T + RV+++D Sbjct: 78 VPAADAEKEAAAEGGDGEGGTTKAKSAQ----IVIEQIRDLQEALTVTGHHSARRVVVVD 133 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 P + MN ANALLK LEEPP F+L+S A +L T+RSRC F+ S L + Sbjct: 134 PAEAMNVFTANALLKLLEEPPAGCTFVLVSSAPRRLLPTLRSRCQQWSFSRPSSGQLAQ 192 >gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] Length = 583 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYQDTLAITGYADQVKI 249 >gi|289450158|ref|YP_003475319.1| DNA polymerase III subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184705|gb|ADC91130.1| DNA polymerase III, subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 612 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 28/224 (12%) Query: 9 VYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 +Y R F G + + L Q R+ HA LF G +G GK +L +A + P+ Sbjct: 9 IYRPRTFAEVVGQKHVITALQQAIRQDRIAHAYLFCGTRGTGKTSLAKIFA-RAINCPNG 67 Query: 65 SKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A +PC+ P + +L D + + + N +VD IRRI + Sbjct: 68 HDA-------EPCNACPICRGSLDGSLLDIIEMDAASN---------NSVDNIRRICDEV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + T ++V +ID V ++ A NALLK+LEEPP+ ++FIL + I +TI SRC Sbjct: 112 AFAPTTCKYKVYIIDEVHMLSVGAFNALLKTLEEPPEHIVFILATTDPQRIPATILSRCQ 171 Query: 183 SIKFNSLSENNLYKALEQLKIMGW--DSKRDFVKIAAYGSVARA 224 +LS L + +L+++ D K D I A +A+ Sbjct: 172 RYDLRALS---LTEIASRLRLIATENDIKADDSAIEALAGLAKG 212 >gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 605 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 30 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 87 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 88 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 133 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 192 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 193 QRYNFKRISNDQLVARMKFILDQEKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 251 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 252 AKINYQDTLAITGYADQVKI 271 >gi|120554494|ref|YP_958845.1| DNA-directed DNA polymerase [Marinobacter aquaeolei VT8] gi|120324343|gb|ABM18658.1| DNA polymerase III, delta prime subunit [Marinobacter aquaeolei VT8] Length = 343 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS---KAPVRMCNPDPCSPF 80 + Q R+ HALL GEQG+GK AG +L + AP+ C Sbjct: 18 VQQRLAQDRLPHALLVVGEQGVGKRAWAEAVAGLLLCDQQVGLDDGAPIACGQCRQC--- 74 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + +A+++ D S P+ + ++ VD+IR + F + + +V ++D D Sbjct: 75 -QLIAANSHPDVRVYS----PEKSR---MVKVDQIRALSTFAVASPQVAHRKVAIVDRAD 126 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +N NAANALLK+LEEP V +L+ + +L TIRSRC ++ Sbjct: 127 QLNINAANALLKTLEEPLPDVTLLLLQESGRPVLPTIRSRCQALTI 172 >gi|306829660|ref|ZP_07462850.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis ATCC 6249] gi|304428746|gb|EFM31836.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis ATCC 6249] Length = 552 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNSCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++ LE+ I + + A G + A+ IL Sbjct: 179 TQDITAHIHHILEKENISSEPDAIEIIARRAEGGMRDALSIL 220 >gi|227533726|ref|ZP_03963775.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188710|gb|EEI68777.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 578 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L +G+ HA LF G +G GK ++ A + L Sbjct: 21 RVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 80 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + + +L D + + + N VDEIR IR Sbjct: 81 ED--------GEPDNTCEICQAINNGSLTDVIEIDAASNNG---------VDEIRDIRDK 123 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 124 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 183 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 184 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 239 >gi|257867904|ref|ZP_05647557.1| DNA polymerase III delta prime subunit [Enterococcus casseliflavus EC30] gi|257801987|gb|EEV30890.1| DNA polymerase III delta prime subunit [Enterococcus casseliflavus EC30] Length = 304 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LFEG++G GK L A + +AP C+ Sbjct: 24 GRIAHAYLFEGDKGTGKHELSLWLAKRLFCTNVQEEAPCGTCS----------------- 66 Query: 91 DFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + L ++ +P + +I VD+IR+++ S + ++ ++ D MN +AA Sbjct: 67 NCLRIAQGEHPDVIQIEPDGQMIKVDQIRQLQEEFSKSGFESRLKIFILSQADKMNNSAA 126 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N+LLK LEEP L IL + + IL TI+SRC I F+ LS+ L + L++ Sbjct: 127 NSLLKFLEEPVGNFLAILETESLGRILPTIQSRCQIIHFSPLSKEKLQEKLQE 179 >gi|325844366|ref|ZP_08168121.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1] gi|325489171|gb|EGC91554.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1] Length = 605 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 121/285 (42%), Gaps = 30/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA P + G I + + R+ HA LF G +G GK ++ A V Sbjct: 8 RAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAV----- 62 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V +PC+ V + + + D + + N VDEIR IR Sbjct: 63 ---NCVNYPTDEPCNECVNCTTITNGSNSDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPTMGRYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIA---AYGSVARAI----KILHYDCD 233 F +S + + L E L + + D V++ A G + A+ +++ Y D Sbjct: 171 QRFDFKQISTKEITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYSYD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 KI+ ID +H A ++ QI + D D + + I Sbjct: 231 KIL---IDDVHALSGTIANHQLLQIIRGIKDLDFSTIIDLIQDMI 272 >gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7] Length = 586 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 174 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 229 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 230 TNGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIIT 285 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 286 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNY 342 Query: 342 R 342 R Sbjct: 343 R 343 >gi|163814923|ref|ZP_02206311.1| hypothetical protein COPEUT_01074 [Coprococcus eutactus ATCC 27759] gi|158449862|gb|EDP26857.1| hypothetical protein COPEUT_01074 [Coprococcus eutactus ATCC 27759] Length = 330 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + GHEDI + G++ + GE G GK TL R LQ + P C Sbjct: 6 EIIGHEDIIRHFKSSIELGKISQGYIINGETGSGKKTLT-RALVKTLQCEEGGTEPCNHC 64 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 Q + D +++++ P VI+V+EIR ++ + + + + Sbjct: 65 KS------CLQCETGNQPDIIWVTHD-KP------NVISVEEIRDQVNSDIDIKPYSSRY 111 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I+ +N NA NALLK++EE P + IL+++ +L TI+SRC+ + + E Sbjct: 112 KIYVIEDAQLLNVNAQNALLKTIEEAPSYAIIILLTNNIDKMLQTIQSRCIVLNVKPVRE 171 Query: 192 NNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 +++ L +LK+ K DF A G++ +AI++ D Sbjct: 172 HDILDYLMNELKL--DKQKADFCMDFAQGNLGKAIRLATSD 210 >gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] Length = 586 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 174 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 229 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 230 TNGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIIT 285 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 286 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNY 342 Query: 342 R 342 R Sbjct: 343 R 343 >gi|218768446|ref|YP_002342958.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis Z2491] gi|121052454|emb|CAM08790.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis Z2491] Length = 709 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ + + L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVARHLAYVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|325522361|gb|EGD00963.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. TJI49] Length = 381 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|221135204|ref|ZP_03561507.1| DNA polymerase III subunits gamma and tau [Glaciecola sp. HTCC2999] Length = 834 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + +S + R+HHA LF G +G+GK T+ +A + + Sbjct: 8 RKWRPNKFSELVGQEHVVTAISNALDNNRLHHAYLFTGTRGVGKTTIARIFAKSLNCDTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P C + + D L + + K VD+ R + + Sbjct: 68 LSANPCGECG------TCRDIEQGRFVDLLEIDAASRTK---------VDDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SRCL Sbjct: 113 YRPTQGDYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 +LS + + L Sbjct: 173 FNLKALSREQIQQQL 187 >gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] Length = 601 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 24 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 83 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 84 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 128 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 129 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 188 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 189 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 244 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 245 TNGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIIT 300 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 301 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNY 357 Query: 342 R 342 R Sbjct: 358 R 358 >gi|313668558|ref|YP_004048842.1| DNA polymerase III tau and gamma chains [Neisseria lactamica ST-640] gi|313006020|emb|CBN87479.1| DNA polymerase III tau and gamma chains [Neisseria lactamica 020-06] Length = 710 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + P +C C+ Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE-PCGVCQS--CT----QIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ + + L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVARHLSHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|293400034|ref|ZP_06644180.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306434|gb|EFE47677.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 601 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 20/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++G + I + L ++ HA LF G +G GK ++ +A + + Sbjct: 8 RTYRPNSFDEVYGQKHIVQTLKHAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKTINCTDE 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +KA + N C Q +H D + + + N + RT+I +++Y Sbjct: 68 HTKACGKCEN---C--IAVQEGNHP--DIIEIDAASNNGVEEVRTLI-----EKVKY--- 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 113 -APLKGKYKVYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQR 171 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + EN L L+ ++ D + A G + A+ IL Sbjct: 172 FDFTKIPRNDIENRLRDVLQGEQLTCEDEVIRIIAQLADGGLRDALSIL 220 >gi|153833856|ref|ZP_01986523.1| DNA polymerase III tau subunit [Vibrio harveyi HY01] gi|148869798|gb|EDL68772.1| DNA polymerase III tau subunit [Vibrio harveyi HY01] Length = 732 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 47/325 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITANPCGEC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--------- 230 +S +++++ LE+ ++ + AA GS+ A+ + Sbjct: 173 FHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNGTI 232 Query: 231 ------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLASN------GVEWDGLLQQL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQ 303 ++ + A AL L++A A+ Sbjct: 286 ASQLHRVAMYQALPSTLDQAQPDAE 310 >gi|147669156|ref|YP_001213974.1| DNA polymerase III, delta prime subunit [Dehalococcoides sp. BAV1] gi|146270104|gb|ABQ17096.1| DNA polymerase III, delta prime subunit [Dehalococcoides sp. BAV1] Length = 343 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + + FLS ++ HA +F G G+GK + +A + N S P + C Sbjct: 3 RIIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQAL--NCQASPPPCQEC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C + + +H L L + + GK + I V +I I++ SL G ++ Sbjct: 61 SV--CGRILSRNHPDIIH--LELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYK 116 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +I + ++ ++N LLK+LEE + +FIL++ +L T+ SRC ++ + N Sbjct: 117 VFIIHQAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVEIN 176 Query: 193 NLYKALEQLKIMGWDS-KRDFVKIAAYGSVARAIKI 227 + +AL LK G D+ K + + ++G V A+++ Sbjct: 177 LIREAL--LK-QGLDAEKAELLSHLSHGRVGWAMEV 209 >gi|297172304|gb|ADI23281.1| ATPase involved in DNA replication [uncultured actinobacterium HF0770_13M05] Length = 291 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 27/178 (15%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 ++S +GR+ HALL +G G G+A L A ++ D S P + +PD Sbjct: 14 YVSSLNTTGRLPHALLIDGPGGCGEAQLAGEIALMLI---DRSGDPRTIVHPD------- 63 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 F ++ I VD IR + F+ TA G +V++++ M Sbjct: 64 ---------FRWIEAE--------NGAIKVDRIRSLIDFMQQTAQAGALKVVVLEDAQKM 106 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N NA NALLK LEEPP IL++ A +L T+ SRC + + + + L + Sbjct: 107 NLNAGNALLKILEEPPLGSHLILVTEAKSVMLPTVISRCQRVSIRRPTREVVVRWLSE 164 >gi|269958916|ref|YP_003328705.1| putative DNA polymerase III, subunit unknown [Anaplasma centrale str. Israel] gi|269848747|gb|ACZ49391.1| putative DNA polymerase III, subunit unknown [Anaplasma centrale str. Israel] Length = 290 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 30/153 (19%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G +GIGK+ L +A HV + + P D + + Sbjct: 24 LLCGRRGIGKSRLSRAFAKHVTGSVELESDP----------------------DVMLIDN 61 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + P I+VD++R +R FL +TA +V+++D +D ++ ++ NA+LK+LEEP Sbjct: 62 ATEP--------ISVDKVREMRRFLHMTAIRSKRKVVIVDSIDDLSVSSTNAMLKTLEEP 113 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P L +LISH + ++SRC+ + + LS Sbjct: 114 PAGSLILLISHNVHRVPVVVKSRCVILPLHELS 146 >gi|29653842|ref|NP_819534.1| DNA polymerase III subunit delta' [Coxiella burnetii RSA 493] gi|161831517|ref|YP_001596430.1| DNA polymerase III subunit delta' [Coxiella burnetii RSA 331] gi|165919106|ref|ZP_02219192.1| DNA polymerase III, delta' subunit [Coxiella burnetii RSA 334] gi|212213016|ref|YP_002303952.1| DNA polymerase III subunit delta' [Coxiella burnetii CbuG_Q212] gi|29541105|gb|AAO90048.1| DNA polymerase III, delta' subunit [Coxiella burnetii RSA 493] gi|161763384|gb|ABX79026.1| DNA polymerase III, delta' subunit [Coxiella burnetii RSA 331] gi|165917175|gb|EDR35779.1| DNA polymerase III, delta' subunit [Coxiella burnetii RSA 334] gi|212011426|gb|ACJ18807.1| DNA polymerase III, delta' subunit [Coxiella burnetii CbuG_Q212] Length = 319 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 30/255 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMAS 86 Y GR+ HALL G G+GK F +A V + +C C F + + Sbjct: 17 YRQGRLPHALLLTGSPGLGK----FDFAKAVAEFILCEAQDGGVCGSCRGCQLF--RAGN 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H DF L K I + +IR + L+ TA ++V +I P + MNR A Sbjct: 71 HP--DFFKLIPEEKSKN------IKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA LK+LEEP ++ ILISH +L TI SRC + F + + + L++ +I G Sbjct: 123 ANAFLKTLEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQK-QIEG- 180 Query: 207 DSKRDFVKI---AAYGSV-ARAIKILHYD--CDKIISSYIDLIHIPRQEYALQKMQQIAD 260 +R+ +++ A+Y + A +K L+Y D+++ I+L ++E A+ +A Sbjct: 181 -DRREAIQLLTAASYAPLQALQLKSLNYTEVRDRLLQLIINLTA--QRENAV----SVAG 233 Query: 261 ELLSQDQKIAFDFLI 275 LL +D LI Sbjct: 234 TLLKEDLPFVLQVLI 248 >gi|55823095|ref|YP_141536.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus CNRZ1066] gi|116627908|ref|YP_820527.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus LMD-9] gi|55739080|gb|AAV62721.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus CNRZ1066] gi|116101185|gb|ABJ66331.1| DNA polymerase III, tau subunit [Streptococcus thermophilus LMD-9] gi|312278488|gb|ADQ63145.1| DNA polymerase III, tau subunit [Streptococcus thermophilus ND03] Length = 550 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQGA 181 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L LE+ + D + A G + A+ IL Sbjct: 182 IKEHLASILEKEGLTFDDEALTIISRRAEGGMRDALSIL 220 >gi|315613323|ref|ZP_07888232.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis ATCC 49296] gi|315314558|gb|EFU62601.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis ATCC 49296] Length = 552 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++ LE+ I + + A G + A+ IL Sbjct: 179 TQDITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|254252241|ref|ZP_04945559.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894850|gb|EAY68730.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 472 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNRG---------VDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + ++ LE++ Sbjct: 170 CLQFNLKQMPAGHIVSHLERI 190 >gi|300715625|ref|YP_003740428.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661] gi|299061461|emb|CAX58575.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661] Length = 644 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L L L++ KI + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRGQLQHVLQEEKIEAEPRSLQLLARAADGSMRDALSL 220 >gi|301300447|ref|ZP_07206647.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851944|gb|EFK79628.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius ACS-116-V-Col5a] Length = 579 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K L + + HA LF G +G GK + +A + N Sbjct: 8 RVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI--NCR 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 FSK +PC+ K + L+D + + + N V+EIR IR Sbjct: 66 FSKEG------EPCNECETCKAITEGCLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + L+Q + D + AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLL----DQVIS 226 >gi|296120960|ref|YP_003628738.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] Length = 682 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 17/202 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + I + L GR+ HA LF G +G+GK ++ +A L Sbjct: 8 VLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFA-KALN 66 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P+ +A P C + +++ D + + N +D+IR +R Sbjct: 67 CPNAVEAVPCNTCE------ICRAVSAGQDVDVSEIDGASNRG---------IDDIRTLR 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ + ++V +ID V + + A NALLK+LEEPPQ V FI + + TI S Sbjct: 112 ANVNVKSMRTRYKVYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILS 171 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC F +++ ++ + L Q+ Sbjct: 172 RCQRFDFGTVNIESIGERLRQI 193 >gi|154705723|ref|YP_001424914.1| DNA polymerase III subunit delta' [Coxiella burnetii Dugway 5J108-111] gi|154355009|gb|ABS76471.1| DNA polymerase III, delta' subunit [Coxiella burnetii Dugway 5J108-111] Length = 319 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 30/255 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMAS 86 Y GR+ HALL G G+GK F +A V + +C C F + + Sbjct: 17 YRQGRLPHALLLTGSPGLGK----FDFAKAVAEFILCEAQDGGVCGSCRGCQLF--RAGN 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H DF L K I + +IR + L+ TA ++V +I P + MNR A Sbjct: 71 HP--DFFKLIPEEKSKN------IKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA LK+LEEP ++ ILISH +L TI SRC + F + + + L++ +I G Sbjct: 123 ANAFLKTLEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQK-QIEG- 180 Query: 207 DSKRDFVKI---AAYGSV-ARAIKILHYD--CDKIISSYIDLIHIPRQEYALQKMQQIAD 260 +R+ +++ A+Y + A +K L+Y D+++ I+L ++E A+ +A Sbjct: 181 -DRREAIQLLTAASYAPLQALQLKSLNYTEVRDRLLQLIINLTA--QRENAV----SVAG 233 Query: 261 ELLSQDQKIAFDFLI 275 LL +D LI Sbjct: 234 TLLKEDLPFVLQVLI 248 >gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] Length = 586 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 174 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 229 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 230 TNGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIIT 285 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 286 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANAC-DLNY 342 Query: 342 R 342 R Sbjct: 343 R 343 >gi|295094264|emb|CBK83355.1| hypothetical protein [Coprococcus sp. ART55/1] Length = 330 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 18/220 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHEDI + G++ + GE G GK TL R LQ + P C Sbjct: 7 IIGHEDIIRHFKSSIELGKISQGYIINGETGSGKKTLT-RALVKTLQCEEGGTEPCNHCK 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 Q + D +++++ P VI+V+EIR ++ + + + ++ Sbjct: 66 S------CLQCETGNQPDIVWVTHD-KP------NVISVEEIRDQVNSDIDIKPYSSRYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I+ +N NA NALLK++EE P + IL+++ +L TI+SRC+ + + E+ Sbjct: 113 IYVIEDAQLLNVNAQNALLKTIEEAPSYAIIILLTNNLDKMLQTIQSRCIVLNVKPVREH 172 Query: 193 NLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 ++ L +LK+ K DF A G++ +AI++ D Sbjct: 173 DILDYLMNELKLDK--QKADFCMDFAQGNLGKAIRLATSD 210 >gi|329957436|ref|ZP_08297911.1| putative DNA polymerase III, delta' subunit [Bacteroides clarus YIT 12056] gi|328522313|gb|EGF49422.1| putative DNA polymerase III, delta' subunit [Bacteroides clarus YIT 12056] Length = 374 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 34/292 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G + ++ L Q GR+ HA LF G G+GK L YA ++ Sbjct: 6 VIGQDAAKQRLIQEVQEGRIPHAQLFCGPAGVGKLPLAMAYARYICCPNRTETDACGTCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGK- 105 L +PD F + C ++ L++ + L++ LN + Sbjct: 66 SCVKWNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRRFVLNNPYFSLNHWLNEMGAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G ++V ++ + ++ AN LLK LEEPP+K +F+L Sbjct: 126 GQAIIYAKESDEITRKLSLKSSEGGYKVTIVWLPEKLHEVCANKLLKLLEEPPEKTIFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARA 224 +S A ILSTI SR + E ++ AL+Q + DS+ + A G+ +A Sbjct: 186 VSEAPEMILSTILSRTQRFNIRKIEEASIANALQQKYGVQPVDSQT--IAHLANGNFIKA 243 Query: 225 IKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 ++ +H + + ++ L+ + Q +++M+Q +++L ++ +FL Sbjct: 244 LETIHLNEENELFFELFVKLMRLSYQR-KIREMKQWSEQLAVMGRERQKNFL 294 >gi|167761749|ref|ZP_02433876.1| hypothetical protein BACSTE_00087 [Bacteroides stercoris ATCC 43183] gi|167700385|gb|EDS16964.1| hypothetical protein BACSTE_00087 [Bacteroides stercoris ATCC 43183] Length = 374 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 38/294 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV---- 69 + G + ++ L Q GR+ HA LF G G+GK L YA ++ P+ ++ Sbjct: 6 VIGQDTAKQQLIQEVREGRIPHAQLFCGPAGVGKLPLAMAYARYIC-CPNRTETDACGTC 64 Query: 70 -------RMCNPDP--CSPFVK------QMASHALHDFLYLSYSLNP--KTGKW------ 106 ++ +PD P VK ++ + D+ +L S NP W Sbjct: 65 PSCVKWNKLVHPDVHFVFPIVKNAKGKKEVCDDYIADWRHLVLS-NPYFSLNHWLNEMGA 123 Query: 107 ---RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 + +I E I LSL ++ G ++V ++ + ++ AN LLK LEEPP+K +F Sbjct: 124 ENGQAIIYAKESDEITRKLSLKSSEGGYKVTIVWLPEKLHEVCANKLLKLLEEPPEKTIF 183 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVA 222 +L+S A ILSTI SR + E ++ AL+Q + DS+ + A G+ Sbjct: 184 LLVSEAPEMILSTILSRTQRFNIRKIDEASVANALQQKYGVQPADSQT--IAHLANGNFI 241 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + ++ L+ + Q +++M+Q +++L + ++ +FL Sbjct: 242 KALETIHLNEENELFFKLFVSLMRLSYQR-KIREMKQWSEQLAAMGRERQKNFL 294 >gi|157375987|ref|YP_001474587.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157318361|gb|ABV37459.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 955 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ C +++ D + + + K VD+ R + Sbjct: 65 EKGVTASPCGQCSS--C----IEISEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL SL+ E L L Q ++ + +A GS+ A+ + Sbjct: 170 CLQFNLKSLTLEEIEQQLTHVLSQEQLSFEPQALKLLAKSANGSMRDALSL 220 >gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] Length = 712 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 116/294 (39%), Gaps = 45/294 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+ HA + G +G+GK T R L Sbjct: 99 VLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTA-RIIARALN 157 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P DPC +A L +TG VD++R I Sbjct: 158 CIGPDGKGGPTA----DPCGVCANCVAILNDRHPDVLEMDAASRTG-------VDDVREI 206 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ Sbjct: 207 IDATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVL 266 Query: 179 SRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL------ 228 SRC + ++ L ++ + V AA GSV + +L Sbjct: 267 SRCQRFDLRRVPQSELVGLFSRIADKEHVRLSPDALALVARAADGSVRDGLSLLDQAIAQ 326 Query: 229 ---HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 D D +I + + I+D L D+++ FD L+E +L Sbjct: 327 GTGQTDADGVIGATV-----------------ISDMLGLADREVVFD-LLEAVL 362 >gi|297209025|ref|ZP_06925425.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886296|gb|EFH25229.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 565 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 R F ++S N + + L + +I D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] Length = 586 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 48/361 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNAC--ESCRAFNEQR-SYNIHELDAASNN------------SVDDIRTLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS- 237 F+ +S ++ + L+ Q + + + A G + A+ I D+++S Sbjct: 174 IYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIF----DQVVSF 229 Query: 238 --------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ID +++ EY ++ D +LS + + + L E + K Sbjct: 230 TNGNITYQAVIDNLNVLDYEYYF----RLTDAVLSGNVRASLLILNEILGKGFDGQNIIT 285 Query: 290 ALSGQLEE----ADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L+G + D+ + F S+ +R + + D Q++F + A C DL + Sbjct: 286 GLAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNY 342 Query: 342 R 342 R Sbjct: 343 R 343 >gi|309805430|ref|ZP_07699477.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] gi|308165248|gb|EFO67484.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] Length = 583 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 36/260 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L ++ HA LF G +G GK + +A + N Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI--NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 66 DSK------DGEPCNQCSNCLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSK--RDFVKIAAYG---SVARAIKILHYDC 232 F +S + L L+Q KI +D K + ++A G S++ +IL YD Sbjct: 171 QRYNFKRISNDQLVARMKFILDQDKI-AYDEKSLQVIAQVADGGMRDSLSILDQILSYDQ 229 Query: 233 DKI-------ISSYIDLIHI 245 KI I+ Y D + I Sbjct: 230 AKINYKDTLAITGYADQVKI 249 >gi|291524148|emb|CBK89735.1| hypothetical protein EUR_05380 [Eubacterium rectale DSM 17629] gi|291527809|emb|CBK93395.1| hypothetical protein ERE_14100 [Eubacterium rectale M104/1] Length = 329 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 16/219 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E I + L G++ HA + G Q GK + +A LQ K C Sbjct: 7 IVGNEQIIEHLQNAISMGKVSHAYIINGPQLSGKMMIAEAFA-RALQ---CEKEGTDGCG 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 C Q H D +Y+S+ P I+VD+IR ++ + + + ++ Sbjct: 63 E--CKS-CHQADDHNHPDIIYVSHE-KPNN------ISVDDIRTQLNNDIVIKPYSSKYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + MN+ A NALLK++EEPP + +L++ + + L TIRSRC+++ S+ + Sbjct: 113 IYIVDEAEKMNQQAQNALLKTIEEPPAYAVIMLLTTNADSFLQTIRSRCITLNMKSVKDE 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + L K + D + D A G V +A+K+ D Sbjct: 173 VIKAYLMNEKHIP-DYQADISAAFAQGIVGKAVKLASSD 210 >gi|322385297|ref|ZP_08058942.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus ATCC 51100] gi|321270556|gb|EFX53471.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus ATCC 51100] Length = 554 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ K + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICKAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSMAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|302038228|ref|YP_003798550.1| DNA polymerase III subunit delta' [Candidatus Nitrospira defluvii] gi|300606292|emb|CBK42625.1| DNA polymerase III, delta' subunit [Candidatus Nitrospira defluvii] Length = 343 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 22/220 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------QNPDFSK 66 + GH+ + L R+ HA LF G+ IGK L R A +L Q P+ Sbjct: 6 IIGHDSAKTLLRSAIAQNRLAHAYLFHGDDRIGKRLLALRLAQALLCETVSNEQAPNACG 65 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 A R C +Q+ + DF+ + P I ++ IR I + + Sbjct: 66 A-CRAC---------RQVDARTHPDFMVI----EPDQELANPQIKIELIRDIEHQMIYRP 111 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G ++ +ID D M AANALLK+LEEPP LFIL+S + +TIRSRC +++ Sbjct: 112 LIGDRKICLIDDADRMTIGAANALLKTLEEPPDHSLFILVSSRPYALPATIRSRCQALRL 171 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 + ++ + A+ LK + F+ + + G + RA++ Sbjct: 172 TAPAQTQVEAAV-ILKRELPPADAHFLAVLSDGQLGRALE 210 >gi|295702260|ref|YP_003595335.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium DSM 319] gi|294799919|gb|ADF36985.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium DSM 319] Length = 562 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 20/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I K L + HA LF G +G GK T A V + Sbjct: 8 RVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KAP+ +PC+ + + ++ D + + + N VDEIR IR Sbjct: 64 CEKAPI----AEPCNECATCRGITDGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLS-ENNLYKALEQL 201 F +S E+ +Y+ E L Sbjct: 171 QRFDFKRISPEDIVYRMKEVL 191 >gi|168575523|ref|ZP_02721459.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae MLV-016] gi|183578398|gb|EDT98926.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae MLV-016] Length = 551 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAINCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +L+ LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHLHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|294496893|ref|YP_003560593.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium QM B1551] gi|294346830|gb|ADE67159.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium QM B1551] Length = 562 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 20/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I K L + HA LF G +G GK T A V + Sbjct: 8 RVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KAP+ +PC+ + + ++ D + + + N VDEIR IR Sbjct: 64 CEKAPI----AEPCNECATCRGITDGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLS-ENNLYKALEQL 201 F +S E+ +Y+ E L Sbjct: 171 QRFDFKRISPEDIVYRMKEVL 191 >gi|270292578|ref|ZP_06198789.1| DNA polymerase III [Streptococcus sp. M143] gi|270278557|gb|EFA24403.1| DNA polymerase III [Streptococcus sp. M143] Length = 552 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNHCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +++ LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHHILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|194397860|ref|YP_002037501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae G54] gi|194357527|gb|ACF55975.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae G54] Length = 551 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAXLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|269967359|ref|ZP_06181420.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B] gi|269828067|gb|EEZ82340.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B] Length = 295 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K GK ITVD+IR ++ +R+ +I+P D MN +A+NALLK+LEEP K Sbjct: 58 KEGK---AITVDQIRACNRLAQESSQLNGYRLFVIEPADSMNESASNALLKTLEEPGAKC 114 Query: 162 LFILISHASPTILSTIRSRC 181 LF+L++H +L TIRSRC Sbjct: 115 LFLLVTHNQERLLPTIRSRC 134 >gi|297543639|ref|YP_003675941.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841414|gb|ADH59930.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 324 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 15/182 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE + ++ +A L GE+G+GK + +A V + K + C Sbjct: 3 RIYGHETVLNIFKNVISQNKISNAYLLVGEKGLGKRFMAEYFAIMV----NCKKETEKPC 58 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS +K M + F + P+ I VD IR I +++ + Sbjct: 59 --FKCSSCLKLMDKNHPDVFF-----IEPEENS----IKVDTIRYITNEINIRPYEANKK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M +A NA LK+LEEPP LFILI+ +L TI SRC ++F S+N Sbjct: 108 IFIIDQADKMTVSAQNAFLKTLEEPPLYGLFILIASQQQKLLPTIISRCNIVRFGKESKN 167 Query: 193 NL 194 + Sbjct: 168 TI 169 >gi|283780299|ref|YP_003371054.1| DNA polymerase III subunits gamma/tau [Pirellula staleyi DSM 6068] gi|283438752|gb|ADB17194.1| DNA polymerase III, subunits gamma and tau [Pirellula staleyi DSM 6068] Length = 715 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 19/200 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R + P +L G + + L +GR+ HA LF G +G+GK + F A + Sbjct: 44 VVARRYRPQDFTQLVGQAQVSQALGNAINTGRVGHAYLFTGARGVGKTSTARIFSKALNC 103 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P +C+ + +AS D + + + N +DEIR++ Sbjct: 104 VNGP--TTQPCGVCD------ICRGVASGDDVDVIEIDGASN---------RGIDEIRQL 146 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R +++ + +++ +ID V + A NALLK+LEEPP+ V FI + + I T+ Sbjct: 147 RSGVNIRPSRARFKIYIIDEVHMLTTPAFNALLKTLEEPPEHVKFIFCTTEADKIPITVL 206 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SRC F L + L Sbjct: 207 SRCQRFDFAPLPSQAILDRL 226 >gi|228476401|ref|ZP_04061095.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius SK126] gi|228252023|gb|EEK11061.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius SK126] Length = 550 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQGA 181 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L LE+ + D + A G + A+ IL Sbjct: 182 IKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSIL 220 >gi|323958663|gb|EGB54366.1| DNA polymerase III [Escherichia coli H263] Length = 299 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|325570725|ref|ZP_08146451.1| DNA-directed DNA polymerase III subunit delta' [Enterococcus casseliflavus ATCC 12755] gi|325156571|gb|EGC68751.1| DNA-directed DNA polymerase III subunit delta' [Enterococcus casseliflavus ATCC 12755] Length = 310 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LFEG++G GK L A + +AP C+ Sbjct: 24 GRIAHAYLFEGDKGTGKHELSLWLAKRLFCANVQEEAPCGACS----------------- 66 Query: 91 DFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + L ++ +P + +I VD+IR+++ S + ++ ++ D MN +AA Sbjct: 67 NCLRIAQGEHPDVIQIEPDGQMIKVDQIRQLQEEFSKSGFESRLKIFILSQADKMNNSAA 126 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N+LLK LEEP L IL + + IL TI+SRC I F+ LS+ L + L++ Sbjct: 127 NSLLKFLEEPVGNFLAILETESLGRILPTIQSRCQIIHFSPLSKEKLQEKLQE 179 >gi|253996506|ref|YP_003048570.1| DNA polymerase III subunit delta' [Methylotenera mobilis JLW8] gi|253983185|gb|ACT48043.1| DNA polymerase III, delta prime subunit [Methylotenera mobilis JLW8] Length = 336 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 18/180 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHAL 89 R+ HA+L G GIGK ++ +L RM N C P + Sbjct: 24 RLPHAILLHGRAGIGKYDFARSFSQSLL-------CLNRMPNGGACKTCPSCNWFNEESH 76 Query: 90 HDFLYLSY--------SLNPKTGKWRTVITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVD 140 DF LS + K K +T I+V +IR + FLSL+++ + R++++ P + Sbjct: 77 PDFRLLSPEQEAEPEDAAPSKKTKKKTQISVAQIRDLSDFLSLSSHQSSGVRIVLLHPAE 136 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +N +ANALLK LEEP V+FIL++H +L TI SRC I +E LEQ Sbjct: 137 TLNVASANALLKMLEEPAPGVIFILVAHQLQRLLPTIISRCQKINMPVPNELQALTWLEQ 196 >gi|298528795|ref|ZP_07016199.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira thiodismutans ASO3-1] gi|298512447|gb|EFI36349.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira thiodismutans ASO3-1] Length = 561 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 23/197 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P ++ G + I+ LS+ R HA LF G +G+GK TL A + P Sbjct: 10 YRPQNFAQVAGQDFIKSILSRAAGQDRPSHAYLFSGTRGVGKTTLARILSKAINCYNGP- 68 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P+PC+ +Q+ A D + + + TG VD +R++R Sbjct: 69 ---------APEPCNQCSSCEQITRGASPDVWEIDAASH--TG-------VDNVRKLRED 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + +G ++V++ID ++ +A NALLK+LEEPP +FI+ + A +T+ SRC Sbjct: 111 VAYSPMSGRYKVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F L+ L+ L Sbjct: 171 QHYVFKRLTHGELFAHL 187 >gi|238925618|ref|YP_002939135.1| DNA polymerase III, delta prime subunit [Eubacterium rectale ATCC 33656] gi|238877294|gb|ACR77001.1| DNA polymerase III, delta prime subunit [Eubacterium rectale ATCC 33656] Length = 329 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 16/219 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E I + L G++ HA + G Q GK + +A LQ K C Sbjct: 7 IVGNEQIIEHLQNAISMGKVSHAYIINGPQLSGKMMIAEAFA-RALQ---CEKEGTDGCG 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 C Q H D +Y+S+ P I+VD+IR ++ + + + ++ Sbjct: 63 E--CKS-CHQADDHNHPDIIYVSHE-KPNN------ISVDDIRTQLNNDIVIKPYSSKYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + ++D + MN+ A NALLK++EEPP + +L++ + + L TIRSRC+++ S+ + Sbjct: 113 IYIVDEAEKMNQQAQNALLKTIEEPPAYAVIMLLTTNADSFLQTIRSRCITLNMKSVKDE 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + L K + D + D A G V +A+K+ D Sbjct: 173 VIKAYLMNEKHIP-DYQADISAAFAQGIVGKAVKLASSD 210 >gi|255994278|ref|ZP_05427413.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum ATCC 49989] gi|255993946|gb|EEU04035.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum ATCC 49989] Length = 473 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 20/228 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F P + G E+I K +G + HA L G +G GK TL R + D Sbjct: 12 FRPNTFDEVIGQENIIKVFLNQLKAGSVSHAYLLCGIRGTGKTTLA-RLMAKAVNCLDPQ 70 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K P C + C ++ SH D + + + N VD++R + ++ Sbjct: 71 KKPCGAC--ENCRSITEE--SH--MDVIEIDAASNN---------GVDDVRELIDTVAYP 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +V +ID V +++ A NALLK+LEEPP V+FI + I TI SRC+ Sbjct: 116 PSVAEKKVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRCMRFD 175 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++E++L K L E + + + A GS+ A+ IL Sbjct: 176 LRRITESDLVKRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILE 223 >gi|51894391|ref|YP_077082.1| DNA polymerase III delta' subunit [Symbiobacterium thermophilum IAM 14863] gi|51858080|dbj|BAD42238.1| DNA polymerase III delta' subunit [Symbiobacterium thermophilum IAM 14863] Length = 332 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 15/206 (7%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFV 81 L + GR+ HA LF G G+GK + A + P +A C C + Sbjct: 15 LLRRAVAGGRVAHAYLFAGPAGVGKRLVALELARSLNCLEPRAGEA----CGA--CRSCL 68 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K A +H + + + P+ +I +++R+++ + G ++V++ID + Sbjct: 69 KLSAEPPVHPDVTV---VEPEG----RMIRTEQMRQVQNEVYARPTEGRYKVVIIDGAER 121 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 MN + N LLK LEEPP F+L++ + +L TI SRC + F+ L + L++ Sbjct: 122 MNAESGNRLLKVLEEPPPYACFVLLTTNAAGVLPTIVSRCQIVHFSPLPAEAIAAVLQEK 181 Query: 202 KIMGWDSKRDFVKIAAYGSVARAIKI 227 +G R F ++ GSV A+ + Sbjct: 182 AGIGPGEARLFASLSG-GSVGAALAM 206 >gi|85857923|ref|YP_460125.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB] gi|85721014|gb|ABC75957.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB] Length = 588 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 23/241 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L R+ HA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAINC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + N +DEIR +R Sbjct: 65 EQGPAGTPCNVCT------NCREITEGISMDVREIDGASNRG---------IDEIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V + R A NALLK+LEEPP V+FI + + + +TI SR Sbjct: 110 RIRFLPVSCRYKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F LS L K E KI D+ ++ A GS+ + I D++I Sbjct: 170 CQCFEFRRLSLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIF----DQVI 225 Query: 237 S 237 S Sbjct: 226 S 226 >gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus JW 200] gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus JW 200] Length = 518 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 33/237 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I + L ++ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ + + ++ D L + + N +V+++R +R Sbjct: 67 KD----------GEPCNSCEICQAINNNTTMDVLEIDAASNN---------SVNDVRELR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI S Sbjct: 108 ESVIYSPSIAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILS 167 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDS-----KRDFVKIAAY--GSVARAIKILH 229 RC F + + + LE++ I DS ++ IA Y GS+ AI +L Sbjct: 168 RCQRFDFKKIPTRLIAQNLEKICI---DSNIKIEEKGLKTIALYGNGSMRDAISLLE 221 >gi|290953351|ref|ZP_06557972.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica URFT1] gi|295313398|ref|ZP_06804005.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica URFT1] Length = 545 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQTDIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|167569714|ref|ZP_02362588.1| DNA polymerase III subunits gamma and tau [Burkholderia oklahomensis C6786] Length = 553 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCR------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|55821183|ref|YP_139625.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus LMG 18311] gi|55737168|gb|AAV60810.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus LMG 18311] Length = 550 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQGA 181 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L LE+ + D + A G + A+ IL Sbjct: 182 IKEHLASILEKEGLTFDDEALTIISRHAEGGMRDALSIL 220 >gi|73663587|ref|YP_302368.1| DNA polymerase III gamma and tau subunits [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496102|dbj|BAE19423.1| DNA polymerase III gamma and tau subunits [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 570 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R F P + + G E + K L + HA +F G +G GK ++ F A + L+ Sbjct: 8 RMFRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLER 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 SD----------GEPCNECAICKGITRGTNSDVIEIDAASNNG---------VDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 R F ++S+ + + L E I ++ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISQEEIVERLKFVAESQAIEYDEAALNFIAKASEGGMRDALSIM 221 >gi|328675333|gb|AEB28008.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida 3523] Length = 546 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 142/310 (45%), Gaps = 32/310 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 + +S+ + L L + I + +++ A GS+ A+ +L D+ IS Sbjct: 173 LHLKHISQADIKDQLKTVLAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS-- 226 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA- 298 E +++Q+ + S++ + +I+ K I + K AL+ ++ Sbjct: 227 -----FCGGELKQARIKQMLGIIDSEEVYSIINAIIDNDPKAILPAVKNLALTESSADSV 281 Query: 299 -DQIAQIYFS 307 D+IA+I+F+ Sbjct: 282 LDKIAEIWFA 291 >gi|237741245|ref|ZP_04571726.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] gi|229430777|gb|EEO40989.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] Length = 484 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 18/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ R L + Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIA-RLIAKGLNCLN 65 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + N +PC+ K + D + + + N ++DEIR ++ Sbjct: 66 LKE------NGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIRSLKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 111 INYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L + LE + Sbjct: 171 QRYDFKPLDLEEMKAGLEHI 190 >gi|293365608|ref|ZP_06612317.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis ATCC 35037] gi|307703557|ref|ZP_07640499.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis ATCC 35037] gi|291315976|gb|EFE56420.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis ATCC 35037] gi|307622964|gb|EFO01959.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis ATCC 35037] Length = 552 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + ++ LE+ I + + A G + A+ IL Sbjct: 179 TQDITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSIL 220 >gi|242243365|ref|ZP_04797810.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233314|gb|EES35626.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 568 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 31/235 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + K L G+ HA +F G +G GK ++ +A + N Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 63 DFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D N +PC+ K + +D + + + N VDEIR IR Sbjct: 68 D---------NGEPCNECAICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 110 KVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 170 AQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|119897248|ref|YP_932461.1| DNA polymerase III subunit tau [Azoarcus sp. BH72] gi|119669661|emb|CAL93574.1| DNA polymerase III subunit Tau [Azoarcus sp. BH72] Length = 662 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGTLVGQEHVVRALSHALATGRLHHAYLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + + D++ + + N V+++ + Sbjct: 65 ETGVTAEPCGQCE------ACRAIDADRFPDYVEMDAASN---------RGVEDMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + ++ + L+++ Sbjct: 170 CLQFNLKQMPQGHIVEHLDRV 190 >gi|90962203|ref|YP_536119.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius UCC118] gi|90821397|gb|ABE00036.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius UCC118] Length = 579 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K L + + HA LF G +G GK + +A + N Sbjct: 8 RVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI--NCR 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 FSK +PC+ K + L+D + + + N V+EIR IR Sbjct: 66 FSKEG------EPCNECETCKAITEGRLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + L+Q + D + AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLL----DQVIS 226 >gi|89257153|ref|YP_514515.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica LVS] gi|115315492|ref|YP_764215.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica OSU18] gi|156503378|ref|YP_001429443.1| DNA polymerase III, subunits gamma/tau [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011046|ref|ZP_02275977.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica FSC200] gi|254368377|ref|ZP_04984395.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica 257] gi|89144984|emb|CAJ80344.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica LVS] gi|115130391|gb|ABI83578.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134254185|gb|EBA53279.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica 257] gi|156253981|gb|ABU62487.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica FTNF002-00] Length = 545 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQTDIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|34499177|ref|NP_903392.1| DNA polymerase III subunit delta' [Chromobacterium violaceum ATCC 12472] gi|34105028|gb|AAQ61384.1| DNA-directed DNA polymerase III, delta subunit [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 17/182 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 RM A LF G GIGK A +L ++P P C C F +H Sbjct: 19 RMPGAWLFTGAAGIGKLAFAEHLAQSLLCESPAAGHQPCGQCQG--CRWF--HSGTHP-- 72 Query: 91 DFLYLS-------YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 DF LS KT + I ++ +R + F LTA+ RVI+++P + +N Sbjct: 73 DFRRLSPFADEEEEGKEAKTTRKLPQIKIEAVREVIDFAHLTAHRAGRRVILVEPAESLN 132 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 AANALLK LEEPP+ VLF+L+SHA +L TIRSRC +E+ AL LK Sbjct: 133 LAAANALLKILEEPPEAVLFLLVSHAPQRLLPTIRSRCRQFALTRPAES---AALAWLKE 189 Query: 204 MG 205 G Sbjct: 190 QG 191 >gi|307704666|ref|ZP_07641566.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK597] gi|307621775|gb|EFO00812.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK597] Length = 551 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSETEAVEIIARRAEGGMRDALSIL 220 >gi|251790619|ref|YP_003005340.1| DNA polymerase III subunits gamma and tau [Dickeya zeae Ech1591] gi|247539240|gb|ACT07861.1| DNA polymerase III, subunits gamma and tau [Dickeya zeae Ech1591] Length = 678 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQC--DTC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + LEQ +++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDAEQIRRQLQHVLEQEQLIAEPRALQLLARAADGSLRDALSL 220 >gi|224475611|ref|YP_002633217.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus subsp. carnosus TM300] gi|222420218|emb|CAL27032.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus subsp. carnosus TM300] Length = 583 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 8 RMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCPNS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C K + + D + + + N VDEIR IR + Sbjct: 68 VDGEPCNEC--DIC----KSITQGSNSDVIEIDAASNN---------GVDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 113 YAPSQSKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR 172 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + + L E I D F+ A+ G + A+ I+ Sbjct: 173 FDFKAIGLDQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIM 221 >gi|78355113|ref|YP_386562.1| DNA polymerase III subunit tau [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217518|gb|ABB36867.1| DNA polymerase III, tau subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 577 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 23/219 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCN 73 G E ++ LS+ R+ A LF G +G+GK T+ F A + + P + P C Sbjct: 20 GQETVKAILSRAAAENRVAPAYLFSGTRGVGKTTIARIFAKALNCTRGP--AAEPCNEC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + MA D + + + N +D+ +R++ + G ++V Sbjct: 77 -EQCRKITQGMAV----DVVEIDGASN---------RGIDDAKRLKEAIGYAPMEGRYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + R A NALLK+LEEPP V F++ + TI SRC F L+EN Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPANVTFVMATTEPHKFPVTIVSRCQHFIFKRLTENG 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKIL 228 L L + L+ G + + VK+ A GSV ++ +L Sbjct: 183 LAAHLVRILEREGTGYESEAVKLIARRAAGSVRDSMSLL 221 >gi|148266337|ref|YP_001233043.1| DNA polymerase III, subunits gamma and tau [Geobacter uraniireducens Rf4] gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4] Length = 579 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 19/223 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLIGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C P ++ D + + N TG VD+IR +R Sbjct: 65 EQGLTTEPCNTC------PSCTEITDGNSVDVFEIDGASN--TG-------VDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRSRYKIFIIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 C F ++ L K +++L+ + D ++ V A VAR Sbjct: 170 CQRFDFKRIA---LQKIVDRLRYI-VDQEQVSVSDKALAVVAR 208 >gi|260061286|ref|YP_003194366.1| putative DNA polymerase III subunit delta [Robiginitalea biformata HTCC2501] gi|88785418|gb|EAR16587.1| putative DNA polymerase III, delta subunit [Robiginitalea biformata HTCC2501] Length = 388 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 43/258 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 + G ++K L+ GR+ HA LF G +G G + YA ++L + + P Sbjct: 6 ILGLAHLKKHLTSSADGGRIPHAQLFVGPEGCGTLPMAVAYARYILCGNSGGENDGPNTA 65 Query: 72 CN--------PDPCSPF----VKQMASHALHDF-------------------LYLSYSLN 100 CN PD F + SHA+ D Y + Sbjct: 66 CNSKCERLAHPDLHFAFPVANSDTVKSHAVSDHYLPRWRDFVREQPYGNLFDWYRFIGIE 125 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 K G+ I VDE I LSL + G ++V+++ + MN AAN LLK +EEP K Sbjct: 126 KKQGQ----IGVDEAHDIVKKLSLKSYEGGYKVMIVWMAERMNIPAANKLLKLIEEPAPK 181 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AY 218 + ILI+ +L TIRSRC + F L E + L ++ ++ + +IA A Sbjct: 182 TVLILIAEDEELLLQTIRSRCQLLHFPPLPEVVIADGL----VVRGSNREEATQIAQEAN 237 Query: 219 GSVARAIKILHYDCDKII 236 G+ +A+ +L+ D + ++ Sbjct: 238 GNFNKALDLLNKDSEDLV 255 >gi|300114109|ref|YP_003760684.1| DNA-directed DNA polymerase [Nitrosococcus watsonii C-113] gi|299540046|gb|ADJ28363.1| DNA-directed DNA polymerase [Nitrosococcus watsonii C-113] Length = 322 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 RM HA+L G G+GK +A +++Q + P + + + + D Sbjct: 8 RMPHAILLAGPVGMGKRA----FASNLIQALS-CEYPQKGGYGCGSCSGCRLQCAGSHPD 62 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + +L+PK GK I+V++IR+++ L+L A ++ + I P + M NAAN+LL Sbjct: 63 ----NMTLSPKEGK--QTISVNQIRQLQSHLALKARQSLFKTVAIFPAEEMTLNAANSLL 116 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 K LEEPP K + +LI+ A + TIRSRC F L L+Q Sbjct: 117 KILEEPPSKTVLVLITSAFLQLPITIRSRCQQFFFAPLKSQEAQVWLQQ 165 >gi|254368386|ref|ZP_04984403.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|157121280|gb|EDO65481.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] Length = 546 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQTDIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|331266204|ref|YP_004325834.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis Uo5] gi|326682876|emb|CBZ00493.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis Uo5] Length = 552 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ ++ L S+ D V+I A G + A+ IL Sbjct: 179 TQDIKDHIQAILSKENISSEPDAVEIIARRAEGGMRDALSIL 220 >gi|307129958|ref|YP_003881974.1| DNA polymerase III/DNA elongation factor III, tau and subunit gammas [Dickeya dadantii 3937] gi|306527487|gb|ADM97417.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Dickeya dadantii 3937] Length = 672 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DTC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L +L + LEQ ++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDAEQIRQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSL 220 >gi|289577351|ref|YP_003475978.1| DNA polymerase III delta prime subunit [Thermoanaerobacter italicus Ab9] gi|289527064|gb|ADD01416.1| DNA polymerase III, delta prime subunit [Thermoanaerobacter italicus Ab9] Length = 324 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++GHE + ++ +A L GE+G+GK + +A V + K + Sbjct: 3 RIYGHETVLNIFKSVISQNKISNAYLLVGEKGLGKRFMAEYFAIMVNCKKETEKPCFK-- 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS +K M + F + P+ I VD IR I +++ + Sbjct: 61 ----CSSCLKLMDKNHPDVFF-----IEPEENS----IKVDTIRYITNEINIRPYEANKK 107 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M +A NA LK+LEEPP LFILI+ +L TI SRC ++F S+N Sbjct: 108 IFIIDQADKMTVSAQNAFLKTLEEPPLYGLFILIASQQQKLLPTIISRCNIVRFGKESKN 167 Query: 193 NL 194 + Sbjct: 168 TI 169 >gi|167770018|ref|ZP_02442071.1| hypothetical protein ANACOL_01360 [Anaerotruncus colihominis DSM 17241] gi|167667852|gb|EDS11982.1| hypothetical protein ANACOL_01360 [Anaerotruncus colihominis DSM 17241] Length = 314 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q+L + LS GR HALL EG G GK T A + Q + AP R Sbjct: 2 QKLLYNRRAGAVLSGMAAGGRFPHALLLEGPAGCGKKT----AAALIAQERLCTGAP-RP 56 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C CS +K +H + Y++ P+ K V +IR+ Y + N G Sbjct: 57 CGV--CSGCIK--VEKGVHPDVRF-YTV-PEGKKEFPVELARDIRQDAY---IAPNEGAC 107 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D MN +A NALLK +EEPP V FIL+ +L TI SR +S++ + S Sbjct: 108 KVYIVDQAHTMNASAQNALLKIIEEPPAGVYFILLCENRAQMLPTILSRVVSVELETPSP 167 Query: 192 NNLYKALEQLK 202 + AL L+ Sbjct: 168 DECAAALASLE 178 >gi|311280618|ref|YP_003942849.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae SCF1] gi|308749813|gb|ADO49565.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae SCF1] Length = 641 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ SGR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLASGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIELGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE + KI + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRAQLEHILGEEKINFESRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS 238 +S Sbjct: 226 AS 227 >gi|145299061|ref|YP_001141902.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida subsp. salmonicida A449] gi|142851833|gb|ABO90154.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida subsp. salmonicida A449] Length = 865 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C D C +++ D L + + K R ++ + R R Sbjct: 65 EQGISSHPCGVC--DTC----REIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPAR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 118 --------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL SL + + K LE Sbjct: 170 CLQFHLKSLDQTQIAKQLE 188 >gi|17158711|ref|NP_478222.1| DNA polymerase III subunit delta' [Nostoc sp. PCC 7120] gi|17134660|dbj|BAB77218.1| DNA polymerase III, delta prime subunit [Nostoc sp. PCC 7120] Length = 291 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 26/217 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGE-QGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G + L++ ++ A LF E +G+GK + +A +L S Sbjct: 8 EIIGQHTAKLLLTEAIERNQIAPAYLFSNEVEGVGKGKIALAFANAILSRGSRSA----- 62 Query: 72 CNPDPCSPFVKQMASHALH-DFLYL--SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 +A + H D L + SY+ N K I V+++R + FLS +A Sbjct: 63 ------------IAGESKHLDILQIKPSYTENTSQQKGVPAIRVEQVREVIEFLSTSAVE 110 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++I D +N AAN LLK+LEEP FILIS +L TI+SRC I F Sbjct: 111 GKQKVVIIHEADMLNPTAANKLLKTLEEPKTGT-FILISSYPQKLLLTIKSRCQIIPFQR 169 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 L++ + L+ +I ++ + I++ GS +AI Sbjct: 170 LTDEEVISVLKDQQI---EATEKILAISS-GSPGQAI 202 >gi|325294717|ref|YP_004281231.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium thermolithotrophum DSM 11699] Length = 463 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 19/202 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R + P + G E I L +GR HA +F G +G+GK T R L Sbjct: 6 IPRKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAYVFAGPRGVGKTTTA-RIVAKALNC 64 Query: 62 PDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + +PC+ + ++ + D + + + N +D+IR +R Sbjct: 65 ES-------LIDGEPCNECSNCQAISKGSFPDVIEIDAATNR---------GIDQIRELR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ G +V +ID + + A NALLK+LEEPP+ V+FIL + I TI S Sbjct: 109 ESVNYAPVKGKKKVYIIDEFHMLTKEAFNALLKTLEEPPEHVVFILATTEIDKIPPTILS 168 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC F + ++ + + L+++ Sbjct: 169 RCQKFVFRRIPKDLMVETLKRI 190 >gi|294784544|ref|ZP_06749833.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] gi|294487760|gb|EFG35119.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] Length = 484 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 18/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ R L + Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIA-RLIAKGLNCLN 65 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + N +PC+ K + D + + + N ++DEIR ++ Sbjct: 66 LKE------NGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIRSLKEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 111 INYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L + LE + Sbjct: 171 QRYDFKPLDLEEMKAGLEHI 190 >gi|168490954|ref|ZP_02715097.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC0288-04] gi|183574571|gb|EDT95099.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC0288-04] Length = 551 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|15902813|ref|NP_358363.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae R6] gi|116516459|ref|YP_816247.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae D39] gi|15458364|gb|AAK99573.1| DNA-directed DNA polymerase III chain [Streptococcus pneumoniae R6] gi|116077035|gb|ABJ54755.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae D39] Length = 551 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9301] gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9301] Length = 586 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 15/189 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR-MC 72 L G + I L Q + ++ A LF G +G GK T R L F + + C Sbjct: 20 LVGQKFISITLKQALLTKKIAPAYLFNGPRGTGK-TSSARIFAKSLNCQAFDQPTITPCC 78 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C +Q+ + D + + + N TG V+ IR I W+ Sbjct: 79 KCDLC----RQITDGSALDIIEIDAASN--TG-------VENIREIIERARFAPTQARWK 125 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID ++ A+NALLK++EEPP +V+FIL + +LSTI+SRC F +S + Sbjct: 126 VYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQKFDFRRISPS 185 Query: 193 NLYKALEQL 201 ++++ L ++ Sbjct: 186 DIFQHLSEI 194 >gi|153207960|ref|ZP_01946513.1| DNA polymerase III, delta' subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212218893|ref|YP_002305680.1| DNA polymerase III subunit delta' [Coxiella burnetii CbuK_Q154] gi|120576261|gb|EAX32885.1| DNA polymerase III, delta' subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212013155|gb|ACJ20535.1| DNA polymerase III, delta' subunit [Coxiella burnetii CbuK_Q154] Length = 319 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 30/255 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMAS 86 Y GR+ HALL G G+GK F +A V + +C C F + + Sbjct: 17 YRQGRLPHALLLTGSPGLGK----FDFAKAVAEFILCEAQDGGVCGSCRGCQLF--RAGN 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H DF L K I + +IR + L+ TA ++V +I P + MNR A Sbjct: 71 HP--DFFKLIPEEKSKN------IKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAA 122 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA LK+LEEP ++ ILISH +L TI SRC + F + + + L++ +I G Sbjct: 123 ANAFLKTLEEPCGQIFLILISHQLGALLPTILSRCQRLAFTASANEPTVQWLQK-QIEG- 180 Query: 207 DSKRDFVKI---AAYGSV-ARAIKILHYD--CDKIISSYIDLIHIPRQEYALQKMQQIAD 260 +R+ +++ A+Y + A +K L+Y D+++ I+L ++E A+ +A Sbjct: 181 -DRREAIQLLTAASYAPLQALQLKSLNYTEVRDRLLQLIINL--TAQRENAV----SVAG 233 Query: 261 ELLSQDQKIAFDFLI 275 LL +D LI Sbjct: 234 TLLKEDLPFVLQVLI 248 >gi|82702979|ref|YP_412545.1| DNA-directed DNA polymerase [Nitrosospira multiformis ATCC 25196] gi|82411044|gb|ABB75153.1| DNA polymerase III, tau subunit [Nitrosospira multiformis ATCC 25196] Length = 580 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 35/240 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+HHA LF G +GIGK T+ A + Sbjct: 7 VLARKWRPRRFSELTGQDHVVRALTNALEQKRLHHAYLFTGTRGIGKTTIARILAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-----EI 115 + P +C S + G++ +I VD ++ Sbjct: 67 QAGVTSEPCGVC-----------------------SACIEIDGGRFVDLIEVDAASNTQV 103 Query: 116 RRIRYFL--SLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 ++R L +L A T ++V +ID V ++++A NA+LK+LEEPP+ V FIL + Sbjct: 104 EKMRELLENALYAPTVARYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 163 Query: 173 ILSTIRSRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 I T+ SRCL + ++L LEQ I + + AA GS+ A+ IL Sbjct: 164 IPVTVLSRCLQFNLKQIPFPLIVSHLRHVLEQEHINCDATSLQLLARAAQGSMRDALSIL 223 >gi|169633760|ref|YP_001707496.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii SDF] gi|169152552|emb|CAP01532.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii] Length = 682 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS SGR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|29726698|pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|29726699|pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749629|pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749630|pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749631|pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749632|pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 72 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 177 CLQFHLKALDVEQIRHQLEHI 197 >gi|15900748|ref|NP_345352.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae TIGR4] gi|111657220|ref|ZP_01407992.1| hypothetical protein SpneT_02001572 [Streptococcus pneumoniae TIGR4] gi|14972337|gb|AAK74992.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae TIGR4] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|307127584|ref|YP_003879615.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 670-6B] gi|306484646|gb|ADM91515.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 670-6B] gi|332077278|gb|EGI87740.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA17545] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|282891156|ref|ZP_06299660.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498973|gb|EFB41288.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 512 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P Q + G + I L GR+ +A LF G +G GK TL +A + P Sbjct: 9 RKYRPQRFQEVLGQDPIITTLKNAIQMGRLANAYLFCGSRGTGKTTLARLFAKALNCLTP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P CN C+ + H+L D L + + + +D+IR+I + Sbjct: 69 SPEHEP---CNQ--CASCREISTGHSL-DVLEIDGASH---------RGIDDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A +G +++ +ID V + + A NALLK+LEEPP V F + +L TI SRC Sbjct: 114 GYAAASGKYKIYIIDEVHMLTKEAFNALLKTLEEPPLNVKFFFATTEPHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAA 217 N + + + L + + MG +++ + + I A Sbjct: 174 RFNLNRIPLEKIVEKLRHITQDMGIEAQEEALHIIA 209 >gi|148984597|ref|ZP_01817865.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP3-BS71] gi|149026346|ref|ZP_01836501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP23-BS72] gi|225856531|ref|YP_002738042.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae P1031] gi|307067463|ref|YP_003876429.1| DNA polymerase III subunits gamma/tau [Streptococcus pneumoniae AP200] gi|147922988|gb|EDK74103.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP3-BS71] gi|147929308|gb|EDK80307.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP23-BS72] gi|225724656|gb|ACO20508.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae P1031] gi|301799858|emb|CBW32433.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae OXC141] gi|306409000|gb|ADM84427.1| DNA polymerase III, gamma/tau subunits [Streptococcus pneumoniae AP200] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|37527701|ref|NP_931046.1| DNA polymerase III subunits gamma and tau [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787136|emb|CAE16213.1| DNA polymerase III subunit Tau [Contains: DNA polymerase III subunit gamma] [Photorhabdus luminescens subsp. laumondii TTO1] Length = 658 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ GR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQIFSDVIGQEYILTALANGLAHGRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITDKPCGKCV------NCLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 CL SL + LE++ I + R + AA GS+ A+ + Sbjct: 170 CLQFHLKSLDIGQISDQLERILKAEHIESDNRARQLLARAADGSMRDALSL 220 >gi|227891208|ref|ZP_04009013.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC 11741] gi|227867082|gb|EEJ74503.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC 11741] Length = 585 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K L + + HA LF G +G GK + +A + N Sbjct: 14 RVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI--NCR 71 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 FSK +PC+ K + L+D + + + N V+EIR IR Sbjct: 72 FSKEG------EPCNECETCKAITEGRLNDVIEIDAASNNG---------VEEIRDIRDK 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 117 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 176 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + L+Q + D + AA G + A+ +L D++IS Sbjct: 177 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLL----DQVIS 232 >gi|149911597|ref|ZP_01900209.1| HolB [Moritella sp. PE36] gi|149805318|gb|EDM65331.1| HolB [Moritella sp. PE36] Length = 323 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR+HHAL G+GK + A +L P C+P C Q+ ++ Sbjct: 19 AGRLHHALFITSASGMGKLSYAQTLAQTLLCKEPIGWEPCHRCHP--C-----QLFETSV 71 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H YL ++ + GK VI VD IR I L+ + G +V++I+ + N +ANA Sbjct: 72 HPDYYL---VSTEPGK---VIGVDRIRHISQKLNEHSQLGGNKVVIIEHAESFNLASANA 125 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LLK+LEEP IL++ +L TI SRC + + +E L+Q Sbjct: 126 LLKTLEEPSNGSYLILLAENKSQVLPTIYSRCQKLHLPAPAEQESMAWLQQ 176 >gi|182416378|ref|YP_001821444.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1] gi|177843592|gb|ACB77844.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1] Length = 395 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 19/240 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G + + + L R+ HA LF G +G GK + +A L Sbjct: 8 VIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFA-KALN 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D KA + DP P K +A + D + + + N VD++R +R Sbjct: 67 CTDGPKA-----DFDPNDPACKAIAEGSHLDVIEIDGASNNG---------VDQVRDLRD 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ A NALLK+LEEPP V F+ + +L TI SR Sbjct: 113 TVQYAPAQGRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISR 172 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C + + + L+Q+ S++ + AA +AR D I+ I Sbjct: 173 CQRFDLKPIPPDLIIARLKQIAA----SEKITISAAALECIARMADGGMRDAQSILDQMI 228 >gi|117620554|ref|YP_856735.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561961|gb|ABK38909.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 849 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C D C +++ D L + + K R ++ + R R Sbjct: 65 EQGISSHPCGVC--DTC----REIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPAR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 118 --------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL SL + + K LE Sbjct: 170 CLQFHLKSLDQTQIAKQLE 188 >gi|289167756|ref|YP_003446025.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6] gi|288907323|emb|CBJ22160.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|289432424|ref|YP_003462297.1| DNA-directed DNA polymerase [Dehalococcoides sp. GT] gi|288946144|gb|ADC73841.1| DNA-directed DNA polymerase [Dehalococcoides sp. GT] Length = 343 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + + FLS ++ HA +F G G+GK + +A + N S P + C Sbjct: 3 RIIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQAL--NCQASPPPCQEC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C + + +H + L + + GK + I V +I I++ SL G ++ Sbjct: 61 SV--CGRILSRNHPDIIH--MELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYK 116 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +I + ++ ++N LLK+LEE + +FIL++ +L T+ SRC ++ + N Sbjct: 117 VFIIHQAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVEIN 176 Query: 193 NLYKALEQLKIMGWDS-KRDFVKIAAYGSVARAIKI 227 + +AL LK G D+ K + + ++G V A+++ Sbjct: 177 LIREAL--LK-QGLDAEKAELLSHLSHGRVGWAMEV 209 >gi|148988284|ref|ZP_01819731.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae SP6-BS73] gi|147925965|gb|EDK77039.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae SP6-BS73] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|149002400|ref|ZP_01827334.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS69] gi|149010503|ref|ZP_01831874.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP19-BS75] gi|168493019|ref|ZP_02717162.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC3059-06] gi|182683780|ref|YP_001835527.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CGSP14] gi|221231645|ref|YP_002510797.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC 700669] gi|225854373|ref|YP_002735885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae JJA] gi|225858665|ref|YP_002740175.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae 70585] gi|237822659|ref|ZP_04598504.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CCRI 1974M2] gi|147759337|gb|EDK66329.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS69] gi|147764984|gb|EDK71913.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP19-BS75] gi|182629114|gb|ACB90062.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CGSP14] gi|183576952|gb|EDT97480.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC3059-06] gi|220674105|emb|CAR68624.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC 700669] gi|225721913|gb|ACO17767.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 70585] gi|225723299|gb|ACO19152.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae JJA] gi|301794000|emb|CBW36398.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae INV104] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|325680624|ref|ZP_08160166.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8] gi|324107694|gb|EGC01968.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8] Length = 534 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + FD V +Q I L G+ HA LF G +G GK T +A V N + Sbjct: 12 KTFDDVVSQ-----PHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAV--NCE 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K + C + C K + +L D + + + N +V++IR +R + Sbjct: 65 HGKDGMPCCECEIC----KAADNGSLGDIIEIDAASNA---------SVNDIRELREGVM 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T +++ +ID V ++ A NALLK++EEPP V FIL + + +TI SRC Sbjct: 112 FTPEMCKYKIYIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQH 171 Query: 184 IKFNSLSENNLYKAL 198 FN + ++ L Sbjct: 172 FDFNRIKTEDIVARL 186 >gi|116333249|ref|YP_794776.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC 367] gi|116098596|gb|ABJ63745.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC 367] Length = 576 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + + L + ++ HA LF G +G GK + +A + + Sbjct: 8 RVWRPQQFKDMIGQEVVTRTLKNAITTKQISHAYLFAGPRGTGKTSAAKIFAKAINCHHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C + + + L+D + + + N V+EIR IR + Sbjct: 68 TDGEPCNEC--DTC----QAITNGTLNDVIEIDAASNNG---------VEEIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 113 YAPTVADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ ++ Y L+Q + + + AA G + A+ IL Sbjct: 173 FDFKRIAASDSYSRMTYILDQKGVTYDEQALKVIAKAAEGGMRDALSIL 221 >gi|332076145|gb|EGI86611.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA41301] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|327390218|gb|EGE88561.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA04375] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|229542243|ref|ZP_04431303.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans 36D1] gi|229326663|gb|EEN92338.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans 36D1] Length = 563 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + K L + HA LF G +G GK + A V + Sbjct: 8 RTWRPQRFADVVGQEHVTKTLQHALLQQKTTHAYLFSGPRGTGKTSAAKILAKAV----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ + + + D + + + N TG VD+IR IR Sbjct: 64 CEHAPTG----EPCNECAVCRGITDGTIPDVIEIDAASN--TG-------VDDIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSVVKYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F ++ +++K L Sbjct: 171 QRFDFKRITSRDIFKRL 187 >gi|225861242|ref|YP_002742751.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae Taiwan19F-14] gi|298229159|ref|ZP_06962840.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255733|ref|ZP_06979319.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503129|ref|YP_003725069.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|225728151|gb|ACO24002.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae Taiwan19F-14] gi|298238724|gb|ADI69855.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|237731031|ref|ZP_04561512.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2] gi|226906570|gb|EEH92488.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2] Length = 334 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + +++ Q P+ K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLMCQKPEGHKSCGQCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ YSL P+ GK + + VD +R + L + G + + Sbjct: 67 -----LMQAGTHP--DY----YSLLPEKGK--STLGVDAVREVSEKLYEHSRLGGAKAVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I + AANALLK+LEEPP + F L S +L+T+RSRC Sbjct: 114 IPDAAQLTDAAANALLKTLEEPPAQTWFFLASTEPARLLATLRSRC 159 >gi|331092483|ref|ZP_08341306.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400986|gb|EGG80586.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium 2_1_46FAA] Length = 516 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 8 RKFRPSEFDDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCQHT 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + +A A + + + + N VD IR IR ++ Sbjct: 68 EDGSPCGECE------MCRSIALGASMNVIEIDAASNN---------GVDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+F+L + + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFVLATTEAHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S + + L +L Sbjct: 173 YDFKRISIDTIADRLREL 190 >gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus pseudintermedius ED99] Length = 567 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 8 RMFRPQSFEDVVGQEHVTKTLKNAIAKGKQSHAYIFSGPRGTGKTSIAKIFAKAINCEVR 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C + S D + + + N VDEIR IR + Sbjct: 68 DDGEPCNECAS--CKGITQGYNS----DVIEIDAASNN---------GVDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 113 YAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR 172 Query: 184 IKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +++ N + L Q +I ++ F+ + G + A+ I+ Sbjct: 173 FDFKAINANRIVDRLRYVAHQQQIEFDEAALTFIAKVSEGGMRDALSIM 221 >gi|225575711|ref|ZP_03784321.1| hypothetical protein RUMHYD_03804 [Blautia hydrogenotrophica DSM 10507] gi|225037069|gb|EEG47315.1| hypothetical protein RUMHYD_03804 [Blautia hydrogenotrophica DSM 10507] Length = 336 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 24/216 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHED+ + L +G++ H+ +F G++G GK + +A LQ P + C Sbjct: 14 IIGHEDVVEHLKNAIETGKVSHSYIFYGDKGAGKKLMASTFA-MALQCEKDGFEPCQTC- 71 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 D C K+ D + +++ P + I++DEIR+ + + + ++ Sbjct: 72 -DSC----KKALGKNHPDIIQVTHE-KPNS------ISIDEIRQQLILDVDIKPYNSEYK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +I D M A NALLK++EEPP + IL++ +L TI+SRC+ + + ++ Sbjct: 120 IYIIPEADKMTPQAQNALLKTIEEPPSYAVIILLTENVDGLLPTIQSRCIRLDM-KVVDD 178 Query: 193 NLYKA--LEQLKIMGWDSKRDFVKIAAY--GSVARA 224 L K +E L++ + ++ D A+Y GS+ +A Sbjct: 179 ALVKDYLMEHLQVPDYQAEVD----ASYAQGSIGKA 210 >gi|254302055|ref|ZP_04969413.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322247|gb|EDK87497.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 484 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV----- 61 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 62 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 106 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 166 IISRCQRYDFKPLDLEEMKSGLEHI 190 >gi|325663669|ref|ZP_08152073.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470162|gb|EGC73395.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium 4_1_37FAA] Length = 521 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 8 RKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C +++A + + + + N VD IR IR ++ Sbjct: 68 VDGSPCGQC------AMCQKIAEGTSMNVIEIDAASNN---------GVDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + + QL + + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFKRITIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|307709201|ref|ZP_07645660.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK564] gi|307620147|gb|EFN99264.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK564] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|186475716|ref|YP_001857186.1| DNA polymerase III subunits gamma and tau [Burkholderia phymatum STM815] gi|184192175|gb|ACC70140.1| DNA polymerase III, subunits gamma and tau [Burkholderia phymatum STM815] Length = 793 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCR------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + ++ LE++ Sbjct: 170 CLQFNLKQMPAGHIVSHLERI 190 >gi|323351733|ref|ZP_08087387.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis VMC66] gi|322122219|gb|EFX93945.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis VMC66] Length = 556 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ K + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICKAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|317055948|ref|YP_004104415.1| DNA polymerase III subunits gamma and tau [Ruminococcus albus 7] gi|315448217|gb|ADU21781.1| DNA polymerase III, subunits gamma and tau [Ruminococcus albus 7] Length = 532 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 28/266 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + FD V +Q I L G+ HA LF G +G GK T +A V N + Sbjct: 12 KTFDDVVSQ-----PHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAV--NCE 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K + C + C K + +L D + + + N +V++IR +R + Sbjct: 65 HGKDGMPCCECEIC----KAADNGSLGDIIEIDAASNA---------SVNDIRELREGVM 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T ++V +ID V ++ A NALLK++EEPP V FIL + + +TI SRC Sbjct: 112 FTPEMCKYKVYIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQH 171 Query: 184 IKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAAY---GSVARAIKILH----YDCDKI 235 FN + ++ L + G+ D ++ A G + A+ +L + D Sbjct: 172 FDFNRIKTEDIVARLTYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDDIT 231 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADE 261 I + + I ++Y ++ IAD+ Sbjct: 232 IDTVSNASGIAGRDYLFDILESIADK 257 >gi|85058667|ref|YP_454369.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius str. 'morsitans'] gi|84779187|dbj|BAE73964.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius str. 'morsitans'] Length = 734 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLLSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIKQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L N L L+Q +I+ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRNQLSSVLQQEQIVTEPRALQLLARAADGSMRDALSL 220 >gi|254506937|ref|ZP_05119076.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 16] gi|219550222|gb|EED27208.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 16] Length = 712 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFTEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITSTPCGQCA------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL 201 +S + +++ L+ + Sbjct: 173 FHLKPISVDTIHEQLDHI 190 >gi|56413813|ref|YP_150888.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362736|ref|YP_002142373.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128070|gb|AAV77576.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094213|emb|CAR59718.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 334 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIAEAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|258448175|ref|ZP_05696304.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224] gi|257858690|gb|EEV81564.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224] Length = 565 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++ ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYASSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|61679671|pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex gi|61679672|pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex gi|61679673|pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex gi|61679676|pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex gi|61679677|pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex gi|61679678|pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex Length = 368 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|331087183|ref|ZP_08336253.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408869|gb|EGG88330.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 521 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 8 RKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNCEHP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C +++A + + + + N VD IR IR ++ Sbjct: 68 VDGSPCGQC------AMCQKIAEGTSMNVIEIDAASNN---------GVDNIREIREEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 113 YRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F ++ + + + QL + + ++ AA GS+ A+ +L D+ I+ Y Sbjct: 173 YDFKRITIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLL----DQCIAFY 228 Query: 240 I 240 + Sbjct: 229 L 229 >gi|322376416|ref|ZP_08050909.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334] gi|321282223|gb|EFX59230.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334] Length = 551 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|307706413|ref|ZP_07643223.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK321] gi|307618200|gb|EFN97357.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK321] Length = 551 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|39995205|ref|NP_951156.1| DNA polymerase III subunits gamma and tau [Geobacter sulfurreducens PCA] gi|39981967|gb|AAR33429.1| DNA polymerase III, gamma and tau subunits [Geobacter sulfurreducens PCA] gi|298504210|gb|ADI82933.1| DNA polymerase III, gamma and tau subunits [Geobacter sulfurreducens KN400] Length = 579 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 18/202 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P ++ + D L + + N TG VD+IR +R Sbjct: 65 EQGMSPEPCNVC------PACTEITAGTSVDVLEIDGASN--TG-------VDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLK 202 C F + L K + +L+ Sbjct: 170 CQRFDFRRIP---LAKVVARLR 188 >gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] Length = 638 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I + + + R+ HA LF G +G GK ++ R + D Sbjct: 8 RKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMA-RILAKAVNCLD 66 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ K + + A D Y ++ + + VDEIR +R Sbjct: 67 LK-------NGNPCNECANCKSINTGASMDV----YEIDGASARG-----VDEIRVLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID V + + A NALLK+LEEPP VLFIL + I TI SRC Sbjct: 111 VRTLPVAGNKKVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 +F+ +S N++ + L Sbjct: 171 QRYEFHRISVNDIKEHL 187 >gi|221215165|ref|ZP_03588132.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD1] gi|221165101|gb|EED97580.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD1] Length = 498 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCR------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG 205 CL + ++ LE +I+G Sbjct: 170 CLQFNLKQMPAGHIVSHLE--RILG 192 >gi|295112105|emb|CBL28855.1| DNA polymerase III, subunits gamma and tau [Synergistetes bacterium SGP1] Length = 576 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 23/194 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA--SHAL 89 R+ HA LF G +G GK ++ +L +AP+ + +PC V MA + + Sbjct: 8 RIGHAYLFSGPRGCGKTSIA-----RILAKALNCRAPLGV---EPCGSCVNCMAITAGSS 59 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + + N +VDE+R+++ + L ++V +ID V ++ A NA Sbjct: 60 PDVVEIDGASN---------NSVDEVRQLKSQVPLVPFASKYKVYIIDEVHMLSAAAFNA 110 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK+LEEPP V+FIL + + TIRSRC I F+S+ +++ L + W+ Sbjct: 111 LLKTLEEPPSYVVFILATTEPYKVPVTIRSRCQHIPFHSIGARKIFEHLTH--VCEWE-- 166 Query: 210 RDFVKIAAYGSVAR 223 R + A VAR Sbjct: 167 RTAAQPEALWEVAR 180 >gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302] gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302] Length = 599 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 19/203 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 CN + C F +Q + Y + L+ + +V+ I+ + Sbjct: 67 HPGEDGEACNACESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQLKIMG 205 F ++ N +E LK++ Sbjct: 174 IYDFERMTVGN---TIEHLKLVA 193 >gi|168485812|ref|ZP_02710320.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1087-00] gi|183570972|gb|EDT91500.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1087-00] Length = 551 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAINCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|317492877|ref|ZP_07951301.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918999|gb|EFV40334.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 667 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFSDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D L + + K V++ R + Sbjct: 65 ETGITSTPCGVC--DNC----REIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKI 227 CL +L + LE++ G+ ++ +++ AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRTQLEKISTAEGFTAEPRALQLLARAAEGSMRDALSL 220 >gi|32491274|ref|NP_871528.1| hypothetical protein WGLp525 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166481|dbj|BAC24671.1| dnaX [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 365 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 44/290 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + +FL + +++++ L G +GIGK TL A + D + P R+C Sbjct: 18 IIGQDHVLRFLKNSFLDKKIYYSYLISGIRGIGKTTLARLIAKSLNCFYDINFNPCRICK 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 ++ + D + + + + K + V+ I+Y S G +++ Sbjct: 78 N------CEESEKNCFVDLIEIDAASHTKIENIKEVLD-----NIKYLPS----KGRYKI 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +ID V +++ + NALLK LEEPP V FIL + I TI SRCL ++ +SE Sbjct: 123 YIIDEVHMLSKYSFNALLKILEEPPNHVKFILATTELNKIPETILSRCLHLQLKEISETD 182 Query: 193 ---NLYKAL---------EQLKIMGWDSK---RDFVKIAAYGSVARAIKILHYDCDKIIS 237 NL K L E LKI+ S+ RD + +A S+ IL+ ++ Sbjct: 183 ILYNLKKILKLEKIYYEEEALKIISKSSQHSMRDALTLAEKASILGENNILYNVVSDMLG 242 Query: 238 --SYIDL------IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S+++L I + ++E + ++I ++ ++ D DFLI IL Sbjct: 243 CISFMELIDLFEIISLNKKEKLIFFFKKIENKSINWD-----DFLINMIL 287 >gi|228989084|ref|ZP_04149110.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770655|gb|EEM19194.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 326 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA ++EG +GIGK + YA +L N + P C C+ +H D +Y Sbjct: 28 HAYIYEGNKGIGKYQVALLYAKTLLCNDGSNSEPCHEC--KNCTRI--DTGNHP--DIIY 81 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + P I ++I ++ S + ++ +I+ + M NAAN+LLK L Sbjct: 82 IK----PDGAS----IKKEQIEELQKEFSYASFESGKKIYIIENAEKMTANAANSLLKFL 133 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 EEP + IL++ S +LSTI SRC I+F+ +S + +AL + I G ++K Sbjct: 134 EEPESDCIAILLTERSNALLSTIISRCQLIRFSPISPKKVQEALTEQLIFGEEAK 188 >gi|145220196|ref|YP_001130905.1| DNA-directed DNA polymerase [Prosthecochloris vibrioformis DSM 265] gi|145206360|gb|ABP37403.1| DNA-directed DNA polymerase [Chlorobium phaeovibrioides DSM 265] Length = 391 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 40/251 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + L GR+ HA LF G G GK + F A L +P C Sbjct: 6 VIGQQQQVRVLRSALLGGRLAHAYLFTGPDGAGKEMVAFELA-KALSCTSSGTSPEGACG 64 Query: 74 PDPCSPFVKQMAS--HALHDFLY------LSYSLNPKTG---------KWRTV------- 109 C+ ++M + H ++L+ L S +PK ++ T+ Sbjct: 65 L--CAD-CREMEALLHPNVEYLFPVESALLEGSDSPKKDNRKFTEAKERYDTLLEQKKAN 121 Query: 110 ------------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 I +++ +++ S G +V +I D ++ +AAN LLK LEEP Sbjct: 122 PYFTPCMDRSMGILTEQVIQLQQKASFMPREGSRKVFIISQADRLHPSAANKLLKLLEEP 181 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 P +LFIL+S ++L TIRSRC I F + E L +E+ + +R+ + A+ Sbjct: 182 PPHILFILVSSRPESLLPTIRSRCQEIIFQRIPERELRSWMEEQRTDIAPDERESIVKAS 241 Query: 218 YGSVARAIKIL 228 GS+ RA +++ Sbjct: 242 RGSLRRAWELM 252 >gi|284006438|emb|CBA71683.1| DNA polymerase III subunit gamma/tau [Arsenophonus nasoniae] Length = 659 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 23/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFTDVVGQQHVLTALANGLQQQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+ +PC V ++A D + + + K V++ R + Sbjct: 65 EVGISQ--------NPCGQCVNCLEIAHGRFVDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ Sbjct: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 SRCL +L + + LE++ +I R + AA GS+ A+ + Sbjct: 168 SRCLQFHLRTLDIDQISSQLERILAAEQISSDKRARQLIARAAEGSLRDALSL 220 >gi|15828520|ref|NP_325880.1| DNA polymerase III subunits gamma and tau [Mycoplasma pulmonis UAB CTIP] gi|14089462|emb|CAC13222.1| DNA POLYMERASE III SUBUNIT GAMMA AND TAU [Mycoplasma pulmonis] Length = 836 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH---VLQ 60 R + P + G + I L + ++ H LF G +G GK ++ +A + + Sbjct: 29 RVYRPTTFDEVNGQDHIVATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFATALNCIHK 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N DF +PC ++ S+ D + + + N +VD++RR+ Sbjct: 89 NDDF----------NPCQICIEN--SNKNIDIIEMDAASNN---------SVDDVRRLNE 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L G +R+ +ID V ++A NALLKSLEEPP+ V+FI + S I +TI SR Sbjct: 128 ELKSLPLKGEYRIYIIDEVHMFTKSAFNALLKSLEEPPKHVIFIFATTESHKIPNTILSR 187 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 F +S + +L LE+ KI ++ A GS A+ I Sbjct: 188 VQRFNFRRISNDVIIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSI 238 >gi|296157765|ref|ZP_06840599.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1] gi|295892011|gb|EFG71795.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1] Length = 966 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + AP +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSAPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|300087580|ref|YP_003758102.1| DNA polymerase III gamma and tau subunits [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527313|gb|ADJ25781.1| DNA polymerase III, subunits gamma and tau [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 556 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 20/231 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + I L R+ A LF G +G GK + G A V N Sbjct: 8 RKWRPQRLAEVVGQKPITDTLLSALQQNRVAQAYLFCGPRGTGKTSTGRILAKAVNCLNN 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + S P C+ + + + + D + + + N +VD+IR + + Sbjct: 68 EGSGEPCNECS------MCRAITNGSAMDIIEIDAASN---------NSVDDIRVLNDRV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + ++V +ID ++ +A+NALLK+LEEPP +V+FIL + IL TI SRC Sbjct: 113 NYSPAEARYKVYIIDEFHMLSTSASNALLKTLEEPPPRVIFILATTELHKILPTIMSRCQ 172 Query: 183 SIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILH 229 F L+ +++ L ++ G D +RD + + AA GS+ A +L Sbjct: 173 RFDFRRLTTDDITDKLAEIATSEGVDIERDGLVLLARAAGGSLRDAENLLQ 223 >gi|288930044|ref|ZP_06423884.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288328614|gb|EFC67205.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 379 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 33/250 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC 72 + G +D+++ L + R+ HAL+ G G GK LG A ++L + AP C Sbjct: 6 VIGQDDVKRRLVSMVHNNRLPHALMLCGPSGSGKLALGLALASYLLCERHAEGDAPCGEC 65 Query: 73 ----------NPDP--CSPFVKQMASHALH-----DFL-----YLSYSLNPKTGKW---- 106 +PD P ++ + + H DF L +L P W Sbjct: 66 AACAMMRRFEHPDLHFSFPVIRPAGTSSEHKMNSDDFAPQWREMLQTTLYPSIDLWLDQM 125 Query: 107 -----RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + + V E + LS+ ++ G ++V ++ + MN+ AN LLK LEEPP + Sbjct: 126 DAANQQAQMGVGESDLLMKRLSMKSSQGGYKVAVVWLAERMNQECANKLLKLLEEPPAQT 185 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 LFIL+ +L TI+SR I ++ +++ +AL Q + + + R ++ A GS Sbjct: 186 LFILVCQEPELLLETIKSRTQRIDLPPIAVHDMQQALIQKRNITPEDARRVARL-ANGSW 244 Query: 222 ARAIKILHYD 231 A+ L D Sbjct: 245 TNALAELSVD 254 >gi|241767459|ref|ZP_04765151.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] gi|241361752|gb|EER58047.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C C+ + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA--CT----DIDSGRFVDYTELDAASNRG---------VDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + L Q+ Sbjct: 170 TVLSRCLQFNLRPMAPETVLSHLTQV 195 >gi|218847975|ref|YP_002454759.1| DNA polymerase III subunit delta' [Bacillus cereus G9842] gi|218546106|gb|ACK98499.1| DNA polymerase III subunit delta' [Bacillus cereus G9842] Length = 326 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 58/299 (19%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA ++EG +GIGK + YA +L N + P C C+ +H D +Y Sbjct: 28 HAYIYEGNKGIGKYQVALLYAKTLLCNNGSNSEPCHAC--KNCTRI--DTGNHP--DIIY 81 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + P I ++I ++ S + ++ +I+ + M NAAN+LLK L Sbjct: 82 IK----PDGAS----IKKEQIEELQKEFSYASFESGKKIYIIENAEKMTTNAANSLLKFL 133 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK 214 EEP + IL++ S +LSTI SRC I+F +S + +AL + I G ++ Sbjct: 134 EEPESDCIAILLTERSNALLSTIISRCQLIRFAPISPKKVQEALTEQLIFGEEA------ 187 Query: 215 IAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 KI+S + L++ ++I++EL + D + Sbjct: 188 -------------------KILSKLTN---------DLEQARKISEELTLGPK---LDLI 216 Query: 275 IEFILKEICKSAKAAALSGQLEEA---DQIAQIYFSLVKR-VHAFSMYNLDRRQ-MIFH 328 EFI K C + K AL +L EA + I++ +V F Y+L+RR ++F+ Sbjct: 217 QEFIQK--CNTLKVYALKKELSEAFAGKEGTLIFYHIVMLWFEDFLNYHLNRRNDLVFN 273 >gi|15988192|pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|15988193|pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|15988194|pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|61679661|pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex gi|61679662|pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex gi|61679663|pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex gi|61679666|pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex gi|61679667|pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex gi|61679668|pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex Length = 373 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|313900814|ref|ZP_07834304.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2] gi|312954234|gb|EFR35912.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2] Length = 602 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 24/262 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + + L ++ HA LF G +G GK ++ +A + +NP Sbjct: 8 RTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAYLFCGPRGTGKTSIAKIFAKTINCENP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C D C Q SH D + + + N + RT+I +++Y Sbjct: 68 NHK--PCLEC--DNCRAV--QDGSHP--DIIEIDAASNNGVEEVRTLI-----EKVKY-- 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 113 --APLKGKYKIYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQ 170 Query: 183 SIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + ++ LE+ +I + + A G + A+ IL C + Sbjct: 171 RFDFTKVPREEIVQRIHTILEREQITCEEEVIRIIAQLADGGLRDALSILD-QCIAYAQN 229 Query: 239 YIDLIHIPRQEYALQKMQQIAD 260 +I + HI + Y + +Q+ D Sbjct: 230 HIQVHHI-NEIYGITTIQEKLD 250 >gi|227538385|ref|ZP_03968434.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium spiritivorum ATCC 33300] gi|227241767|gb|EEI91782.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium spiritivorum ATCC 33300] Length = 388 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 16/187 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G + I L + ++ A LF G +G+GK T A + N + Sbjct: 9 RKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKTI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + V C D C F + S ++H+ S + +VD+IR + + Sbjct: 67 HITSEVEACGVCDSCKSF-QNGNSFSIHELDAASNN------------SVDDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQSGKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSL 189 FN + Sbjct: 174 IFDFNRI 180 >gi|91203580|emb|CAJ71233.1| similar to DNA polymerase III clamp loader small subunit [Candidatus Kuenenia stuttgartiensis] Length = 354 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 16/189 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ G E + + R+ HA +F G++GIGK A + C Sbjct: 12 KIIGQEQVLSLFKNALKNERLAHAYIFAGQEGIGKMLFARELAKKIFCQSGKIDGACDNC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N K++ + D +L N + VI +++++ ++ L + + Sbjct: 72 N------ICKRIDAGNFTDIFFLLPEKNHR------VIKLEQLKYLQEILFVKPLESKHK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +++I+ D MN A+N LLK+LEEPP + +LI + ++ TI+SRC ++F+ LS Sbjct: 120 IVIIEDADKMNEEASNCLLKTLEEPPLYAIILLIVTSLESVSETIKSRCQVVRFSPLS-- 177 Query: 193 NLYKALEQL 201 KA+E + Sbjct: 178 --LKAMENI 184 >gi|327459781|gb|EGF06121.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1057] Length = 556 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ + Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPNQKEG----- 69 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 70 --EPCNECYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSIL 220 >gi|295676458|ref|YP_003604982.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1002] gi|295436301|gb|ADG15471.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1002] Length = 838 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|197294665|ref|YP_001799206.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma australiense] gi|171853992|emb|CAM11957.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma australiense] Length = 602 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 37/246 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + I + L +++H LF G +G GK TL +A + N Sbjct: 10 RKYRPQTFQDVVGQKFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKVI--NCI 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYL---SYSLNPKTGKWRTVITVDEIRRIRY 120 + ++ +CN C+ + + ++ +D + L SY+ VDEIR I+ Sbjct: 68 YPQSG-DVCNK--CTSCLGSLQTN--NDIVELDGASYN------------GVDEIREIQD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +V +ID V + NA NALLK LEEPP+ V+FILI+ I TI SR Sbjct: 111 KAQYKPHIGKNKVYIIDEVHVLTPNAFNALLKILEEPPKHVVFILITTQMHKIPETILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVK-IAAY--GSVARAIKILHYDCD 233 S F +LS N+ L+++ KI+ D D +K IA Y GS+ A+ +L Sbjct: 171 AQSFSFENLSLENIILQLKKITNLEKIVITD---DAIKDIANYSEGSMRNALSLLDQ--- 224 Query: 234 KIISSY 239 ISSY Sbjct: 225 --ISSY 228 >gi|50120115|ref|YP_049282.1| DNA polymerase III subunits gamma and tau [Pectobacterium atrosepticum SCRI1043] gi|49610641|emb|CAG74086.1| DNA polymerase III subunit tau [Pectobacterium atrosepticum SCRI1043] Length = 691 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LEQ+ Sbjct: 170 CLQFHLKALDVEQIRAHLEQV 190 >gi|320538818|ref|ZP_08038494.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Serratia symbiotica str. Tucson] gi|320030978|gb|EFW12981.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Serratia symbiotica str. Tucson] Length = 642 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 29/259 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 EAGITATPCGQCT------NCREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL N+L + L+++ I S ARA+++L D S Sbjct: 170 CLQFHLNALDVEQIRNQLQRVLIAEQ-----------ITSDARALQLLARAAD---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIA 259 D + + Q AL + Q A Sbjct: 216 DALSLTDQAIALGQGQVTA 234 >gi|291616582|ref|YP_003519324.1| DnaX [Pantoea ananatis LMG 20103] gi|291151612|gb|ADD76196.1| DnaX [Pantoea ananatis LMG 20103] Length = 672 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 21 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 80 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 81 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 125 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 126 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 185 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + + LEQ +I + AA GS+ A+ + Sbjct: 186 CLQFHLKALEVDQIRQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL 236 >gi|228470720|ref|ZP_04055571.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] gi|228307577|gb|EEK16573.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] Length = 429 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 36/268 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L G++ HA LF G +G+GK + A +L Sbjct: 10 RKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTS-----AARIL---- 60 Query: 64 FSKAPVRMCNPDPCSP-----FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 R N + +P V ALH + Y L+ + +VD+IRR+ Sbjct: 61 -----ARTINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNN-----SVDDIRRL 110 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI Sbjct: 111 NEDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTIL 170 Query: 179 SRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIA--AYGSVARAIKILHYDCD 233 SRC F + + + L ++ + + +D R F IA A G + A+ + D Sbjct: 171 SRCQVYDFKPIPPEQIAEQLRRVADAEGLQYDP-RSFDTIARIADGGMRDALSLF----D 225 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADE 261 ++ S+ D + E LQ + + DE Sbjct: 226 RLASTAQD--GVISYEQTLQTLNILDDE 251 >gi|169335258|ref|ZP_02862451.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM 17244] gi|169257996|gb|EDS71962.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM 17244] Length = 645 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 29/241 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R F P + + G ++I L + + HA LF G +G GK + +A + L N Sbjct: 8 REFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAKSICCLNN 67 Query: 62 PDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + CN C+ + A D + + + N +DEIR ++ Sbjct: 68 KEG-----EACNECASCNDI--NIGDGA--DIVEIDAASNR---------GIDEIRDLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ N G ++V +ID V + A NALLK+LEEPP ++FI + IL TI SR Sbjct: 110 KVNYMPNFGRYKVYIIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C FN + N+L L++ +I + + + G++ A+ +L DK I Sbjct: 170 CQRFDFNRIDSEVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLL----DKAI 225 Query: 237 S 237 S Sbjct: 226 S 226 >gi|261822478|ref|YP_003260584.1| DNA polymerase III subunits gamma/tau [Pectobacterium wasabiae WPP163] gi|261606491|gb|ACX88977.1| DNA polymerase III, subunits gamma and tau [Pectobacterium wasabiae WPP163] Length = 690 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LEQ+ Sbjct: 170 CLQFHLKALDVEQIRAHLEQV 190 >gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum NCIB 8327] gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum NCIB 8327] Length = 390 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 27/251 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 +I R + P + E I + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 59 ---LQNPDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 +++P + K C + C F SLN + +VD+ Sbjct: 65 QRMIEDPKYLKEVTEPCGECESCRDFDA-------------GASLNISEFDAASNNSVDD 111 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR +R + G +RV +ID V ++ A NA LK+LEEPP +FI + I Sbjct: 112 IRLLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +TI SRC F + + + + L+ + I D + A GS+ A IL Sbjct: 172 ATIASRCQRFNFKRIPISEIQRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSIL-- 229 Query: 231 DCDKIISSYID 241 D++I+ ID Sbjct: 230 --DQVIAFAID 238 >gi|254373626|ref|ZP_04989110.1| DNA polymerase III [Francisella novicida GA99-3548] gi|151571348|gb|EDN37002.1| DNA polymerase III [Francisella novicida GA99-3548] Length = 546 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 38/313 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L D+ I Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 226 S-------FCSGELKQAQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSA 278 Query: 297 EA--DQIAQIYFS 307 +A D+IA+I+F+ Sbjct: 279 DAVLDKIAEIWFA 291 >gi|208780606|ref|ZP_03247945.1| DNA polymerase III, subunits gamma and tau, putative [Francisella novicida FTG] gi|208743581|gb|EDZ89886.1| DNA polymerase III, subunits gamma and tau, putative [Francisella novicida FTG] Length = 546 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 38/313 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L D+ I Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 226 S-------FCSGELKQAQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSA 278 Query: 297 EA--DQIAQIYFS 307 +A D+IA+I+F+ Sbjct: 279 DAVLDKIAEIWFA 291 >gi|307565912|ref|ZP_07628371.1| DNA polymerase III, delta prime subunit family protein [Prevotella amnii CRIS 21A-A] gi|307345340|gb|EFN90718.1| DNA polymerase III, delta prime subunit family protein [Prevotella amnii CRIS 21A-A] Length = 381 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 34/255 (13%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---------- 61 +R+ G D + L R+ HA+LF GE+G+GK L +A ++L Sbjct: 5 KRVIGQIDAIQRLKALVKENRVPHAILFCGEKGVGKMALAMDFACYLLSEGMQKSNTILN 64 Query: 62 ---------------------PDFSKAPVRMCNPDPCSPFVKQMASHALHD--FLYLSYS 98 P A + + S ++K+ + L F + Sbjct: 65 ADAHIEAMLRKWEHPDLHFTYPTIKDASMGAEHQPISSDYIKEWRNMILQGSYFTIQQWM 124 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + K + +IT E + LSL ++ G ++V +I + MN+ +AN +LK LEEPP Sbjct: 125 DHMKATNQQAIITGAEADELTRKLSLKSSQGGFKVSIIWLPERMNQTSANKMLKLLEEPP 184 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 +F+L+S IL TIRSR I + + + +L + + + D R +A Sbjct: 185 SGTIFLLVSEEPDQILETIRSRTQRIDIKRIDDATIEHSLIEQRGIDKDMARRIAHLAN- 243 Query: 219 GSVARAIKILHYDCD 233 GS +A++ ++ D + Sbjct: 244 GSWLKALETINTDNE 258 >gi|134277465|ref|ZP_01764180.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 305] gi|134251115|gb|EBA51194.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 305] Length = 837 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|256846388|ref|ZP_05551845.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] gi|256718157|gb|EEU31713.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] Length = 484 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV----- 61 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 62 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 106 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 166 IISRCQRYDFKPLDLEEMKAGLEHI 190 >gi|227357757|ref|ZP_03842106.1| DNA polymerase III, delta' subunit [Proteus mirabilis ATCC 29906] gi|227162086|gb|EEI47100.1| DNA polymerase III, delta' subunit [Proteus mirabilis ATCC 29906] Length = 328 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y GR HHA+L QG+G L + + ++ QN SK+ CN C + M + Sbjct: 18 YQEGRGHHAILLHASQGMGADALSYGLSRWLMCQNKQGSKS----CNE--CHS-CRLMLA 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D+ + L + GK + I ++ +R++ L A G RV+ I V+ + A Sbjct: 71 ETHPDW----HILQNEKGK--SSIGIEAVRKVTEKLEHHAQQGGSRVVWIKEVEALTEAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP F+L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPVNCYFLLNCQQPEILLATLRSRC 159 >gi|160878207|ref|YP_001557175.1| DNA polymerase III, subunits gamma and tau [Clostridium phytofermentans ISDg] gi|160426873|gb|ABX40436.1| DNA polymerase III, subunits gamma and tau [Clostridium phytofermentans ISDg] Length = 522 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVA-----KILAKTV 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ + +PC+ K + S + + + + + N VD IR I Sbjct: 63 NCEHPI---DGNPCNECAMCKAIQSQSSMNVIEIDAASNNG---------VDNIREIVEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYSPTEGNYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + + K L E+ I + +V AA GS A+ +L Sbjct: 171 QRYDFRRVTIDEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLL 221 >gi|296506517|ref|YP_003667751.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis BMB171] gi|296327104|gb|ADH10031.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis BMB171] Length = 536 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 RA+ P L G I+ + ++ HA L G +G GK T+ + G + Sbjct: 9 RAYRPNSFNDLVGQNHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKSVNCFT 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P + C CS + ++ D L + N V+EIR+IR Sbjct: 68 PLSNGEPCQKC--ANCS----DINNNKFADILEFDAASNNG---------VEEIRQIRDQ 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 113 VHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRC 172 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 173 QQFEFRNIP---LQAMIDRLKFISND 195 >gi|238537887|pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537888|pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537889|pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537892|pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537893|pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537894|pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537930|pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537931|pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537932|pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537935|pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537936|pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537937|pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide Length = 395 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 87 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 135 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 136 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 192 CLQFHLKALDVEQIRHQLEHI 212 >gi|197284752|ref|YP_002150624.1| DNA polymerase III subunit delta' [Proteus mirabilis HI4320] gi|194682239|emb|CAR41961.1| DNA polymerase III, delta' subunit [Proteus mirabilis HI4320] Length = 328 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y GR HHA+L QG+G L + + ++ QN SK+ CN C + M + Sbjct: 18 YQEGRGHHAILLHASQGMGADALSYGLSRWLMCQNKQGSKS----CNE--CHS-CRLMLA 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D+ + L + GK + I ++ +R++ L A G RV+ I V+ + A Sbjct: 71 ETHPDW----HILQNEKGK--SSIGIEAVRKVTEKLEHHAQQGGSRVVWIKEVEALTEAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP F+L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPVNCYFLLNCQQPEILLATLRSRC 159 >gi|189461750|ref|ZP_03010535.1| hypothetical protein BACCOP_02416 [Bacteroides coprocola DSM 17136] gi|189431510|gb|EDV00495.1| hypothetical protein BACCOP_02416 [Bacteroides coprocola DSM 17136] Length = 374 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 29/244 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPD----FSKAP 68 + G + ++ L GR+ HA+LF G +G GK L ++ +NP K P Sbjct: 6 VIGQTEAKRHLLTLVHEGRVPHAILFCGAEGTGKLPLALALTRYLCCENPGEEDACGKCP 65 Query: 69 V-----RMCNPDP--CSPFVKQMAS-------------HALHDFLYLSYS---LNPKTGK 105 ++ +PD P +K+ A L D Y S + Sbjct: 66 SCIKMNKLVHPDVHFAFPVIKKKAGRDTVSDDFIDVWRQQLIDSPYFSLANWLARMGAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + I V E I+ LSL A G +++++I + MN N LLK LEEPP +F+L Sbjct: 126 QQAQIFVRESDEIQRKLSLKAGEGSYKIMIIWLPEKMNAECGNKLLKLLEEPPAYTIFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +S A +IL T+ SR L+E ++ L ++ + D ++A GSV RAI Sbjct: 186 VSEAPESILPTLTSRMQRFNLPPLNEEDIAGLLRTRYMLQPEDASDIAHLSA-GSVLRAI 244 Query: 226 KILH 229 + +H Sbjct: 245 ENIH 248 >gi|154482644|ref|ZP_02025092.1| hypothetical protein EUBVEN_00311 [Eubacterium ventriosum ATCC 27560] gi|149736544|gb|EDM52430.1| hypothetical protein EUBVEN_00311 [Eubacterium ventriosum ATCC 27560] Length = 346 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 22/241 (9%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---------- 60 ++R+ G I + G++ HA + GE+G GK L +A LQ Sbjct: 3 SERILGQNHILRHFENAIRMGKISHAYIINGEEGSGKMNLAIHFA-KALQCERNNSNKAI 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIR 119 N D + V C KQ S D Y++Y K+G I VDEIR +I Sbjct: 62 NEDGERITVPGTACGQCKS-CKQTDSKNQPDIKYITYE---KSG-----IGVDEIREQIN 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + +++ ++ + M A NALLK++EEPP+ + IL++ + T L TI S Sbjct: 113 DDIDIKPYSSPYKIYIVPESEKMTVQAQNALLKTIEEPPEYAIIILLTTNADTFLQTILS 172 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 RC+ + + E+ + L +G D + + G+ +AIK+ + K + Y Sbjct: 173 RCVMLNIRPVKEDIIKNQLTSQYGVG-DYEARVAATFSNGNPGKAIKLATSEEFKELKQY 231 Query: 240 I 240 + Sbjct: 232 V 232 >gi|73748376|ref|YP_307615.1| DNA polymerase III, delta prime subunit [Dehalococcoides sp. CBDB1] gi|73660092|emb|CAI82699.1| DNA polymerase III, delta prime subunit [Dehalococcoides sp. CBDB1] Length = 343 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 10/215 (4%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + + FLS ++ HA +F G G+GK + +A + N S P + C Sbjct: 3 RIIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQAL--NCQASPPPCQEC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C + + +H L L + + GK + I V +I I++ SL G ++ Sbjct: 61 SV--CGRILSRNHPDIIH--LELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYK 116 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +I + ++ ++N LLK+LEE + +FIL++ +L T+ SRC ++ + N Sbjct: 117 VFIIHQAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVEIN 176 Query: 193 NLYKALEQLKIMGWDS-KRDFVKIAAYGSVARAIK 226 + +AL LK G D+ K + + ++G V A++ Sbjct: 177 LIREAL--LK-QGLDAEKAELLSHLSHGRVGWAME 208 >gi|323160419|gb|EFZ46367.1| DNA polymerase III, subunits gamma and tau [Escherichia coli E128010] Length = 372 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|237812565|ref|YP_002897016.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346] gi|237503016|gb|ACQ95334.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346] Length = 825 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] Length = 599 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 19/203 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 CN + C F +Q + Y + L+ + +V+ I+ + Sbjct: 67 HPGEDGEACNACESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQLKIMG 205 F ++ N +E LK++ Sbjct: 174 IYDFERMTVGN---TIEHLKLVA 193 >gi|238537901|pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537902|pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537903|pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537906|pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537907|pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537908|pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 87 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 135 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 136 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 192 CLQFHLKALDVEQIRHQLEHI 212 >gi|206890696|ref|YP_002248894.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742634|gb|ACI21691.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio yellowstonii DSM 11347] Length = 512 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + K L +G++ HA +F G +G+GK + R L D Sbjct: 8 RKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTA-RILAKALNCID 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C P +K+ + ++ + S++ +V+ IR +R + Sbjct: 67 SQNKPCDKC---PSCVAIKEGRAMSVIEIDAASHT------------SVENIRDLRENIR 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G+++V +ID ++++A NA LK+LEEPP V+F+L + I T+ SRC Sbjct: 112 YASAEGFYKVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQH 171 Query: 184 IKFNSLSENNLYKALE 199 ++F + N + + L+ Sbjct: 172 LQFKRIPINLIKQRLQ 187 >gi|172060787|ref|YP_001808439.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria MC40-6] gi|171993304|gb|ACB64223.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria MC40-6] Length = 813 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|34762904|ref|ZP_00143886.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887431|gb|EAA24519.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 490 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 13 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV----- 67 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 68 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 111 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 112 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPT 171 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 172 IISRCQRYDFKPLDLKEMKAGLEHI 196 >gi|53719132|ref|YP_108118.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei K96243] gi|52209546|emb|CAH35499.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei K96243] Length = 825 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|324323719|gb|ADY24763.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 536 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 21/206 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P L G + I+ + ++ HA L G +G GK T+ + G + Sbjct: 9 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVA-KIIGKGVN--- 64 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP + N +PC + ++ D L + N V+EIR+IR Sbjct: 65 -CLAP--LSNGEPCQKCANCSDINNNKFADILEFDAASNNG---------VEEIRQIRDQ 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L TG ++V +ID V ++ +A N LLK+LEEPP V+FIL + + TI SRC Sbjct: 113 VHLAPVTGKYKVYIIDEVHMLSNSAFNVLLKTLEEPPAHVIFILATTDPQKVPKTIISRC 172 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWD 207 +F ++ L +++LK + D Sbjct: 173 QQFEFRNIP---LQAMIDRLKFISHD 195 >gi|319763145|ref|YP_004127082.1| DNA polymerase iii, subunits gamma and tau [Alicycliphilus denitrificans BC] gi|330825208|ref|YP_004388511.1| DNA polymerase III subunits gamma and tau [Alicycliphilus denitrificans K601] gi|317117706|gb|ADV00195.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus denitrificans BC] gi|329310580|gb|AEB84995.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus denitrificans K601] Length = 618 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C P + + D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACQDIDRGRFPDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLARV 195 >gi|53723573|ref|YP_103021.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei ATCC 23344] gi|121598928|ref|YP_993170.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei SAVP1] gi|124386554|ref|YP_001026054.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC 10229] gi|126448303|ref|YP_001080677.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC 10247] gi|254178396|ref|ZP_04885051.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei ATCC 10399] gi|52426996|gb|AAU47589.1| DNA polymerase III, subunit gamma, putative [Burkholderia mallei ATCC 23344] gi|121227738|gb|ABM50256.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei SAVP1] gi|124294574|gb|ABN03843.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei NCTC 10229] gi|126241173|gb|ABO04266.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei NCTC 10247] gi|160699435|gb|EDP89405.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei ATCC 10399] Length = 825 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|269103102|ref|ZP_06155799.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae subsp. damselae CIP 102761] gi|268163000|gb|EEZ41496.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae subsp. damselae CIP 102761] Length = 698 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 35/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPAQFADVVGQAHVLTALENALEHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGVTAHPCGQCA------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKIL-------- 228 CL L + LE++ + + +D K + AA GS+ A+ + Sbjct: 170 CLQFHLKHLDNQQIQTQLEKVLTEEQLAYDIKALSLIARAAEGSMRDALSLTDQSIALGN 229 Query: 229 -HYDCDKIISSYIDLIHIPRQ----EYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 H + DK +++ + + + E QK Q+A + L Q ++ ++ + +L+E+ Sbjct: 230 GHVEADK-VAAMLGTLDTDQALMLLEAVAQKQAQVAMDTLHQLAQVGVEW--DGLLRELA 286 Query: 284 KSAKAAALSGQLEEA 298 A+S L E+ Sbjct: 287 AQLHRIAMSQVLLES 301 >gi|225025048|ref|ZP_03714240.1| hypothetical protein EIKCOROL_01937 [Eikenella corrodens ATCC 23834] gi|224942140|gb|EEG23349.1| hypothetical protein EIKCOROL_01937 [Eikenella corrodens ATCC 23834] Length = 327 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 HE + L+ + G +A L G + GK A +L + P P C Sbjct: 6 HESAWRQLAAQW--GNRPNAWLLTGRRDTGKTAFARHLAQALLCEQPQAEHQPCGSC--P 61 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRV 133 C F + SH D+ L+ L + R + I +D +R + L ++ G RV Sbjct: 62 SCHLFAQ--GSHP--DYYELAPELPAEGESARKLLQIKIDAVRAVLSPLLQSSVRGGLRV 117 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ P + MN AANALLK LEEPP V+F+L++H +L TI+SRC Sbjct: 118 VLVQPAETMNTQAANALLKMLEEPPASVVFLLVTHNKDRLLPTIKSRC 165 >gi|324993075|gb|EGC24995.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK405] gi|324995619|gb|EGC27531.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK678] Length = 556 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ + Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPNQKEG----- 69 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 70 --EPCNECYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSIL 220 >gi|256027041|ref|ZP_05440875.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D11] gi|289765024|ref|ZP_06524402.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] gi|289716579|gb|EFD80591.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] Length = 482 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV----- 61 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 62 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 106 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 166 IISRCQRYDFKPLDLEEMKSGLEHI 190 >gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 531 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G E I + L R+ HA LF G +G GK T+ A + Sbjct: 5 VLARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + C K + D L + + N +D+IR +R Sbjct: 65 KNGPTIKPCGVC--ENCVEISKSSSV----DVLEIDGASNN---------GIDDIRVLRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID + A NALLK+LEEPP V+FI+ + I TI SR Sbjct: 110 NVKFSTASSKYKIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGW---DSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F +S + A++ + + G+ D + V A+ GS+ A+ +L D+ + Sbjct: 170 CQRYRFKLISGAEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLL----DQAV 225 Query: 237 SS 238 SS Sbjct: 226 SS 227 >gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51] gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 557 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 27/283 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L+ ++ HA LF G +G GK T A + N + Sbjct: 8 REWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKAL--NCE 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + V CN C+ F + + + + + N +DEIR +R + Sbjct: 66 HREG-VEPCNQ--CA-FCLSIDQGSAMEVFEIDAASNR---------GIDEIRDLRDKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+A ++V +ID V + A NALLK+LEEPP++V+FIL + I TI SR Sbjct: 113 LSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH----YDCDKI 235 +F+ + ++ L+++ + +G D + + ++I A G + A+ IL D Sbjct: 173 FEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLG 232 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + ++ + +E++ Q+ D LL+ D A L E I Sbjct: 233 VEQVYQVLGMVGEEFSA----QLVDHLLTGDYAKALGCLGEGI 271 >gi|224535386|ref|ZP_03675925.1| hypothetical protein BACCELL_00248 [Bacteroides cellulosilyticus DSM 14838] gi|224522999|gb|EEF92104.1| hypothetical protein BACCELL_00248 [Bacteroides cellulosilyticus DSM 14838] Length = 372 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 30/294 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---------- 58 ++ + + G E + L Q GR+ HA LF G G+GK L YA ++ Sbjct: 1 MFFKEVIGQEAAKLRLRQEVQEGRIPHAQLFCGPSGVGKLPLAMAYARYICCPNRTDTDA 60 Query: 59 ------------LQNPD--FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKT 103 L +PD F V+ + C ++ L+ + L++ LN Sbjct: 61 CGTCPSCVKWNKLVHPDVHFVFPIVKKGKKEVCDDYIADWRHLVLNSPYFSLNHWLNEMD 120 Query: 104 GK-WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 + + +I E I LSL ++ G ++V ++ + M+ AN LLK LEEPP+K + Sbjct: 121 AENGQAIIYAKESDEIVRKLSLKSSEGGYKVTIVWLPEKMHVVCANKLLKLLEEPPEKTV 180 Query: 163 FILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVA 222 F+LIS IL TI SR + E ++ AL+Q + + +A G Sbjct: 181 FLLISETPDMILPTILSRTQRFNIRKIEETDIANALQQKYGVRPNDSFTLAHLAN-GDFI 239 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + ++ L+ + Q +++M+Q +++L ++ +FL Sbjct: 240 KALETIHLNEENELFFELFVSLMRLSYQR-KIREMKQWSEQLAGMGRERQKNFL 292 >gi|317405924|gb|EFV86203.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 400 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 13 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 72 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C+ ++ + D+L L + N V+E+ ++ Sbjct: 73 ETGITSKPCGVCRA--CT----EIDAGRFVDYLELDAASNRG---------VEEMTQLLE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 118 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 177 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + +++ L+ + Sbjct: 178 CLQFNLKQMPADSIVGHLQAV 198 >gi|269962151|ref|ZP_06176505.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833235|gb|EEZ87340.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 729 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 47/319 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITANPCGEC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--------- 230 +S +++++ LE+ ++ + AA GS+ A+ + Sbjct: 173 FHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNGTI 232 Query: 231 ------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D D+ I ++ I + + A+ K+QQ+A + +D L++ + Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLASN------GVEWDGLLQQL 285 Query: 279 LKEICKSAKAAALSGQLEE 297 ++ + A AL L++ Sbjct: 286 ASQLHRVAMYQALPSTLDQ 304 >gi|213586555|ref|ZP_03368381.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 233 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|187932244|ref|YP_001892229.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. mediasiatica FSC147] gi|187713153|gb|ACD31450.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. mediasiatica FSC147] Length = 546 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|154490847|ref|ZP_02030788.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC 43184] gi|154088595|gb|EDN87639.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC 43184] Length = 606 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 16/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNEC--ESCKAFNEQR-SYNIHELDAASNN------------SVDDIRALIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F+ +S ++ + LE Sbjct: 174 IYDFSRISIADMVEHLE 190 >gi|254372143|ref|ZP_04987635.1| DNA polymerase III [Francisella tularensis subsp. novicida GA99-3549] gi|151569873|gb|EDN35527.1| DNA polymerase III [Francisella novicida GA99-3549] Length = 546 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|304395534|ref|ZP_07377417.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB] gi|304356828|gb|EFM21192.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB] Length = 692 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + + LE Q +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVDQIRQQLEHVLKQEQIESETRALQLLARAADGSMRDALSL 220 >gi|134302702|ref|YP_001122670.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis WY96-3418] gi|134050479|gb|ABO47550.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. tularensis WY96-3418] Length = 546 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKIL 228 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 >gi|76808592|ref|YP_333768.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 1710b] gi|254259031|ref|ZP_04950085.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1710a] gi|76578045|gb|ABA47520.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei 1710b] gi|254217720|gb|EET07104.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1710a] Length = 822 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|319777692|ref|YP_004137343.1| DNA polymerase iii subunits gamma and tau [Mycoplasma fermentans M64] gi|318038767|gb|ADV34966.1| DNA polymerase III subunits gamma and tau [Mycoplasma fermentans M64] Length = 604 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 31/240 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V G + I + L + ++ HA LF G +G+GK ++ +A V N Sbjct: 13 KSFDDVK-----GQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVV--NCG 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + ++C + C A +F + G V+EIR +R + Sbjct: 66 HGEDLTKLC--ESC-------IEKADQNFDVIEMDAASNNG-------VNEIRDLRDKIQ 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 110 HSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRVQR 169 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKI 235 F +S N + + L++ KI DS ++ A G + A+ I+ Y DKI Sbjct: 170 YNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSIVDQAAAYGNDKI 229 >gi|238537915|pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537916|pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537917|pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537920|pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537921|pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537922|pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537925|pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537926|pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537927|pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 8 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 68 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 117 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 172 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 173 CLQFHLKALDVEQIRHQLEHI 193 >gi|237755842|ref|ZP_04584440.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense SS-5] gi|237692007|gb|EEP61017.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense SS-5] Length = 501 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 15/183 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + K L R+ HA +F G +G+GK T+ R VL Sbjct: 8 RKYRPKSFKEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIA-RILAKVLN--- 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K PV + C + ++ + D Y ++ + + +D+IR IR + Sbjct: 64 -CKNPVDYEPCNQCENCI-EIDKGSFPDM----YEIDAASNRG-----IDDIRMIRDNVG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP + +FIL + I TI+SRC + Sbjct: 113 YQPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQT 172 Query: 184 IKF 186 F Sbjct: 173 FIF 175 >gi|271500138|ref|YP_003333163.1| DNA polymerase III subunit delta' [Dickeya dadantii Ech586] gi|270343693|gb|ACZ76458.1| DNA polymerase III, delta prime subunit [Dickeya dadantii Ech586] Length = 336 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 17/175 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHA+L + +G+G+A+L + ++ +L Q P+ +K+ R C+ M++ Sbjct: 22 RGHHAVLLQAIEGMGEASLAYAFSRWLLCQQPEGAKSCGR-CH------SCGLMSAGTHP 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ ++L+P+ GK + VD +R + + G +V+ + + + AANAL Sbjct: 75 DW----HTLSPEKGK--HSLGVDAVRDALEPVYQRSRQGGAKVVWLPSAESLTEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 LK+LEEPP + F+L A +L+T+RSRCL + + +E + ++ L+ G Sbjct: 129 LKTLEEPPAQTYFLLGCRAPGQLLATLRSRCLHLYLDVPTE---VQGMQWLRTRG 180 >gi|169833967|ref|YP_001694317.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae Hungary19A-6] gi|168996469|gb|ACA37081.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae Hungary19A-6] Length = 551 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKIYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + LE+ I + + A G + A+ IL Sbjct: 179 TQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter italicus Ab9] gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter italicus Ab9] Length = 515 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L R+ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C + ++ D L + + N +V+++R +R Sbjct: 67 AE--GEPCNSC--DICHA----INNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQTKYKVYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L NL + I D + + GS+ AI +L Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLE 221 >gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium hafniense DCB-2] gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium hafniense DCB-2] Length = 554 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 27/283 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L+ ++ HA LF G +G GK T A + N + Sbjct: 8 REWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKAL--NCE 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + V CN C+ F + + + + + N +DEIR +R + Sbjct: 66 HREG-VEPCNQ--CA-FCLSIDQGSAMEVFEIDAASNR---------GIDEIRDLRDKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+A ++V +ID V + A NALLK+LEEPP++V+FIL + I TI SR Sbjct: 113 LSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH----YDCDKI 235 +F+ + ++ L+++ + +G D + + ++I A G + A+ IL D Sbjct: 173 FEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLG 232 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + ++ + +E++ Q+ D LL+ D A L E I Sbjct: 233 VEQVYQVLGMVGEEFSA----QLVDHLLTGDYAKALGCLGEGI 271 >gi|206603199|gb|EDZ39679.1| DNA polymerase III subunit gamma/tau [Leptospirillum sp. Group II '5-way CG'] Length = 540 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L+ SG++ ALLF G++G+GK T+ A + Sbjct: 9 RKWRPQLFSDLVGQEFVVRALTGTLSSGKLPQALLFSGDRGVGKTTVARILAKAINCEKG 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P + C D C + + D L + + + TG V++IR +R + Sbjct: 69 PTVNPCQEC--DSCLEITRGTSP----DVLEIDGASH--TG-------VEDIRSLREGIR 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 RV +ID V +++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 114 YLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQH 173 Query: 184 IKFNSLSENNLYKALEQL 201 +F SL + LE + Sbjct: 174 FRFRSLGVPEITAKLENI 191 >gi|119713124|gb|ABL97193.1| DNA polymerase III subunits gamma/tau [uncultured marine bacterium EB0_49D07] Length = 539 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 19/233 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + K L ++H A +F G +G+GK T+ R L Sbjct: 5 VLARKYRPSSFSEVVGQEHVLKALENSISQNKLHQAYIFSGTRGVGKTTIA-RVFSKCLN 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 V C D CS + ++ H +L +TG VD++R + Sbjct: 64 CMQADSPQVISC--DKCSACEEIKIGRH----MEFLEVDAASRTG-------VDDMRELL 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID V +++++ NALLK+LEEPP V+F++ + + T+ S Sbjct: 111 DSVQYKPANARFKIYLIDEVHMLSKSSFNALLKTLEEPPPHVMFLMATTEVEKVPKTVLS 170 Query: 180 RCLSIKFNSLSENNL---YKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 RCL + + E + K+L L+ + +D + + +A GSV + +L Sbjct: 171 RCLQLNLKVIPEAKIQLHLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLL 223 >gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 559 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNQCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIK 178 Query: 191 E 191 + Sbjct: 179 Q 179 >gi|296101605|ref|YP_003611751.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056064|gb|ADF60802.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 637 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 1 MLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 61 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRELLD 105 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 106 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 165 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 166 CLQFHLKALDVEQIRTQLEHI 186 >gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola 23] gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola 23] Length = 601 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 16/191 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N Sbjct: 8 RKYRPLSFDTVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCQ 65 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F +Q +L+ F + S N +V+ I+ + Sbjct: 66 HPTAEGEACNECESCQSFNEQ---RSLNIFELDAASNN----------SVEHIKTLMEQT 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 113 RIPPQLGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 172 Query: 183 SIKFNSLSENN 193 F ++ N Sbjct: 173 IYDFERMTIRN 183 >gi|260769015|ref|ZP_05877949.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP 102972] gi|260617045|gb|EEX42230.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP 102972] Length = 692 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 +S N+ L Sbjct: 173 FHLKPISVENIQHQL 187 >gi|281492850|ref|YP_003354830.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp. lactis KF147] gi|281376502|gb|ADA65988.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp. lactis KF147] Length = 552 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L + ++ HA LF G +G GK + +A + P+ Sbjct: 17 EMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFA-KAINCPN-------QV 68 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + +L D + L + N VDEIR IR + A+ Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNG---------VDEIREIRDKSTYAASQAT 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR F S++ Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSIT 179 Query: 191 ENNLYKALEQLKIMG-----WDSKR-DFVKIAAYGSVARAIKIL 228 ++ L KIM +D K D + AA G + A+ +L Sbjct: 180 TGDIRTYL--AKIMADEGLEFDGKALDVIAKAAEGGMRDALSLL 221 >gi|126442209|ref|YP_001059241.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 668] gi|126221702|gb|ABN85208.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 668] Length = 826 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|20806626|ref|NP_621797.1| ATPase involved in DNA replication [Thermoanaerobacter tengcongensis MB4] gi|20515072|gb|AAM23401.1| ATPase involved in DNA replication [Thermoanaerobacter tengcongensis MB4] Length = 320 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 16/173 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++GHE+I K ++ +A LF GE+G+GK L +A V N + P C Sbjct: 1 MYGHEEILKVFRNIINQNKISNAYLFVGEEGLGKRFLAEYFAMMV--NCKGNDKPCFKCT 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C +K+ SH + + P+ I V+ +R I +++ + +V Sbjct: 59 S--CVKMLKK--SHPD------VFIIEPEGDS----IKVETVRYINAEINIKPYESFKKV 104 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +ID D M A NA LK+LEEPP LFILIS +L T+ SRC ++F Sbjct: 105 FIIDRADKMTPAAQNAFLKTLEEPPLYGLFILISPQIEALLPTVVSRCNVVRF 157 >gi|82750185|ref|YP_415926.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus RF122] gi|82655716|emb|CAI80115.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus RF122] Length = 565 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 AD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D+ F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDAALAFIAKASEGGMRDALSIM 221 >gi|152979523|ref|YP_001345152.1| DNA polymerase III subunit delta' [Actinobacillus succinogenes 130Z] gi|150841246|gb|ABR75217.1| DNA polymerase III, delta prime subunit [Actinobacillus succinogenes 130Z] Length = 333 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 ++ + G HHALLF+ ++G+G TL A +L + + P C+ C F Sbjct: 15 ITAAFQQGHGHHALLFKADEGLGAETLVRATAQFLLCRASQQVEKPCEQCHA--CYLF-- 70 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + +H DF L+ N G VD++R I +S A G +V+ + + + Sbjct: 71 RAGNHP--DFHVLASVDNKDIG-------VDQVREINEIISRHAQQGGNKVVHLQGAERL 121 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEPP+ F+L + + ++L+TI SRC Sbjct: 122 TEAAANALLKTLEEPPENTYFLLQTDVNASLLATIYSRC 160 >gi|297543594|ref|YP_003675896.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 516 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L R+ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C + ++ D L + + N +V+++R +R Sbjct: 67 TE--GEPCNSC--DICHA----INNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQTKYKVYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L NL + I D + + GS+ AI +L Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLE 221 >gi|37679465|ref|NP_934074.1| DNA polymerase III subunit delta' [Vibrio vulnificus YJ016] gi|37198209|dbj|BAC94045.1| DNA polymerase III, delta prime subunit [Vibrio vulnificus YJ016] Length = 318 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 24/226 (10%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPD-----------FSKAPVRMCNPDPCSPFVK 82 H+ L QG+ A R G +L D FS A + PD F Sbjct: 3 HYPWLASTWQGLQSAMSAQRLPGAILLQSDVELGVDELIEKFSAALLCKTYPDEGCGFCH 62 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + L + K GK ITV++IR+ ++ +R+ +I+P + M Sbjct: 63 SCELLKSQNHPDLHFIRPEKEGK---AITVEQIRQCNRQAQESSQMDGYRLFVIEPAEAM 119 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N +A+NALLK+LEEP LF+LI H +L TI SRC S++ + ++++ L+ Sbjct: 120 NESASNALLKTLEEPSGSCLFLLICHDKKRLLPTIISRCQQW---SITPPAVSESMQWLQ 176 Query: 203 IMGWDSKRDFVKIAAYGSV-----ARAIKILHYDCDKIISSYIDLI 243 G F+K+A Y V A+ + HY +K+ ++D + Sbjct: 177 QKGVIVNESFLKLAHYSPVTAMHMAKESEFQHY--EKLERQFVDFL 220 >gi|115351816|ref|YP_773655.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria AMMD] gi|115281804|gb|ABI87321.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria AMMD] Length = 824 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|260893949|ref|YP_003240046.1| DNA polymerase III, delta prime subunit [Ammonifex degensii KC4] gi|260866090|gb|ACX53196.1| DNA polymerase III, delta prime subunit [Ammonifex degensii KC4] Length = 320 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR+ HA LF G +G+GK T +A +L + P C C F +M +H Sbjct: 22 TGRIAHAYLFSGPEGVGKRTTAEFFACSILCLAPRER-PCGECRS--CRLF--RMGNHPN 76 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + Y L P+ G + V E+ Y + +GY RV +ID + + A NA Sbjct: 77 Y------YFLAPEQGGSLGIALVKELLSKVY----RSASGY-RVAVIDQAESLTLEAQNA 125 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +LK LEEPP+ V F+L++ +L T+ SRC +KF L + + L++ Sbjct: 126 MLKLLEEPPRLVCFLLVTSQKEALLPTVVSRCREVKFGRLPRSVVAACLKE 176 >gi|224417692|ref|ZP_03655698.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|253827041|ref|ZP_04869926.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|253510447|gb|EES89106.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] Length = 586 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 21/200 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P+ L G E + + LS S R+ HA LF G +G GK T R LQ Sbjct: 11 YRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGK-TSSARIFARALQCEKGP 69 Query: 66 KAPVRMCNPDPCSPFVKQMAS--HALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KA PC +A+ H + D + L + + K +D+IR + Sbjct: 70 KA-------KPCGVCANCIAANPHKMRHIDIIELDGASSRK---------IDDIRDLIEQ 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 114 TKYHPNMGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL 201 +F +SE N+++ L+ + Sbjct: 174 QHFRFKRISEKNIFEHLKNI 193 >gi|213418060|ref|ZP_03351135.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 314 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 72 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 121 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 176 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 177 CLQFHLKALDVEQIRHQLEHI 197 >gi|124516357|gb|EAY57865.1| DNA polymerase III subunit gamma/tau [Leptospirillum rubarum] Length = 540 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L+ SG++ ALLF G++G+GK T+ A + + Sbjct: 9 RKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAKAI----N 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K P DPC Q L S + G T V++IR +R + Sbjct: 65 CEKGPTV----DPC-----QECDSCLEITRGTSPDVLEIDGASHT--GVEDIRSLREGIR 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 RV +ID V +++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 114 YLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQH 173 Query: 184 IKFNSLSENNLYKALEQL 201 +F SL + LE + Sbjct: 174 FRFRSLGVPEITAKLENI 191 >gi|152996288|ref|YP_001341123.1| DNA polymerase III subunit delta' [Marinomonas sp. MWYL1] gi|150837212|gb|ABR71188.1| DNA polymerase III, delta prime subunit [Marinomonas sp. MWYL1] Length = 312 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 23/175 (13%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + + HALL G G+G+ L ++ MC + + A Sbjct: 21 TNSLSHALLITGADGVGQEELAHEMVKNL------------MCEKN------QAAACGTC 62 Query: 90 HDFLYLSYSLNPK----TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 H +S +P G+ T I VD++R + +S G +V++I MN N Sbjct: 63 HSCQLMSADTHPDFRVLDGEAST-IKVDQVRLLVRQISQKPQVGQNKVVLITHAQAMNIN 121 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 AANA+LK+LEEP + F+L S S +++ TIRSRCL + + S N + L Q Sbjct: 122 AANAVLKALEEPADRTFFVLTSSQSSSLMPTIRSRCLLVNVPTPSMNEVKSWLMQ 176 >gi|238810245|dbj|BAH70035.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 612 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 31/240 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V G + I + L + ++ HA LF G +G+GK ++ +A V N Sbjct: 21 KSFDDVK-----GQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVV--NCG 73 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + ++C + C A +F + G V+EIR +R + Sbjct: 74 HGEDLTKLC--ESC-------IEKADQNFDVIEMDAASNNG-------VNEIRDLRDKIQ 117 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 118 HSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRVQR 177 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKI 235 F +S N + + L++ KI DS ++ A G + A+ I+ Y DKI Sbjct: 178 YNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSIVDQAAAYGNDKI 237 >gi|319399737|gb|EFV87985.1| DNA polymerase III, subunits gamma and tau [Staphylococcus epidermidis FRI909] Length = 568 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + +D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNNDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 R F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|313885466|ref|ZP_07819216.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola ACS-139-V-Col8] gi|312619196|gb|EFR30635.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola ACS-139-V-Col8] Length = 675 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 21/194 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P L G I++ L + ++ HA LF G +G GK + A V QNP Sbjct: 8 RVWRPQTFDELIGQNVIQQTLKNAVMNQQLSHAYLFTGPRGTGKTSAAKILAKAVNCQNP 67 Query: 63 DFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N +PC+ + + + D + + + N V+EIR +R Sbjct: 68 Q---------NGNPCNECEACRLINEGQMSDIIEIDAASNNG---------VEEIRDLRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + A+ ++V +ID V + A NALLK+LEEPP VLFIL + I +TI SR Sbjct: 110 NVRYAASQAKYKVYIIDEVHMLTTGAFNALLKTLEEPPANVLFILATTEPHKIPATIISR 169 Query: 181 CLSIKFNSLSENNL 194 F+ +++ +L Sbjct: 170 TQRFDFHRIADKDL 183 >gi|237743482|ref|ZP_04573963.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] gi|229433261|gb|EEO43473.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] Length = 482 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV----- 61 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 62 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 106 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 166 IISRCQRYDFKPLDLEEMKAGLEHI 190 >gi|300853349|ref|YP_003778333.1| DNA polymerase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433464|gb|ADK13231.1| DNA polymerase related protein [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 28/181 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + S R HA +F GE GIGK+ L A +L Sbjct: 6 IIGHENIKLQIKNSVTSNRFSHAHIFVGEDGIGKSLLAKEIALDILGK------------ 53 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 KQM + D + K K + + ++E++ I ++ G +V Sbjct: 54 --------KQMKQYV--DIIEF------KIAKGKKSVGIEEVKNIIEEINKKPYEGDKKV 97 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++ D M A NALLK++EEPP +L+ IL TI+SRC K N LS+ Sbjct: 98 IILYNSDKMTEAAQNALLKTIEEPPSGSFMLLLCEKLDGILDTIKSRCQVYKLNRLSQKE 157 Query: 194 L 194 + Sbjct: 158 M 158 >gi|218263761|ref|ZP_03477753.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii DSM 18315] gi|218222520|gb|EEC95170.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii DSM 18315] Length = 606 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 16/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + + L S ++ HA LF G +G+GK + +A + NP Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q S+ +H+ S + +VD+IR + + Sbjct: 69 TADGEACNEC--ESCKAFNEQR-SYNIHELDAASNN------------SVDDIRALIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP LFIL + +L TI SRC Sbjct: 114 RIPPPIGKYKVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F+ +S ++ + LE Sbjct: 174 IYDFSRISIADMVEHLE 190 >gi|260494910|ref|ZP_05815039.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] gi|260197353|gb|EEW94871.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] Length = 482 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 28/205 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTVARLIAKGV----- 61 Query: 64 FSKAPVRMC-----NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 C N +PC+ K + D + + + N ++DEIR Sbjct: 62 -------NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNR---------SIDEIR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL T Sbjct: 106 SLKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F L + LE + Sbjct: 166 IISRCQRYDFKPLDLEEMKSGLEHI 190 >gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 559 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNQCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIK 178 Query: 191 E 191 + Sbjct: 179 Q 179 >gi|199599027|ref|ZP_03212434.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus HN001] gi|199590063|gb|EDY98162.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus HN001] Length = 565 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G + I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + +L D + + + N G VDEIR IR Sbjct: 68 ED--------GEPDNTCEICQAINDGSLTDVIEIDAASN--NG-------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|320159664|ref|YP_004172888.1| putative DNA polymerase III delta' subunit [Anaerolinea thermophila UNI-1] gi|319993517|dbj|BAJ62288.1| putative DNA polymerase III delta' subunit [Anaerolinea thermophila UNI-1] Length = 341 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 134/301 (44%), Gaps = 31/301 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNP 74 GH+ L + G + HA LF G GIGK TL R+A + P P R C Sbjct: 7 GHDWAVDLLKGHIQRGEVRHAYLFSGAAGIGKRTLALRFAQALNCPTPLAPGEPCRTCR- 65 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 ++QM+ ++ S+ G+ V+ VD+ R ++ L+L +RV Sbjct: 66 --VCRQIEQMS--------HVDLSVVQSEGEG-MVLKVDQARELQQTLALLPRELPYRVA 114 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 ++ N +A NALLK+LEEPP + + ++ + + +L TI SRC ++ L+ Sbjct: 115 LLLRFHEANASAQNALLKTLEEPPARAILLITATSPEELLPTIVSRCEVLRLRPLAPEAC 174 Query: 195 YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD------KIISSYIDLIHIPRQ 248 + L + + +++ ++ + G A+ LH D + + + L+ PR+ Sbjct: 175 AQVLIKRGVPAEEAQ--WLAHLSGGRPGYALN-LHAQPDLLEARRRTLEDLLHLLGAPRR 231 Query: 249 E---YA--LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQ 303 E YA L + E L Q + F + + IC S +L+ L+ A+QI + Sbjct: 232 ERFAYAERLTASRGKERERLLQTLPLWLSFWRDVM---ICASGSGLSLT-HLDFAEQIQR 287 Query: 304 I 304 + Sbjct: 288 V 288 >gi|292487502|ref|YP_003530374.1| DNA polymerase III subunits tau/gamma [Erwinia amylovora CFBP1430] gi|292898743|ref|YP_003538112.1| DNA polymerase III subunit tau/gamma [Erwinia amylovora ATCC 49946] gi|291198591|emb|CBJ45699.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Erwinia amylovora ATCC 49946] gi|291552921|emb|CBA19966.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora CFBP1430] Length = 643 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTEVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + + L+ + Sbjct: 170 CLQFHLKALDQEQIRGQLQHV 190 >gi|294635357|ref|ZP_06713851.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685] gi|291091244|gb|EFE23805.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685] Length = 681 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 29 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D L + + K V++ R + Sbjct: 89 ETGITATPCGVC--DNC----REIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 134 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 193 Query: 181 CLSIKFNSLSENNLYKAL---EQLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 CL +L + L Q + + D++ + AA GS+ A+ ++ Sbjct: 194 CLQFHLRALDHEQIRAQLAKIAQAESLAADARALQLLARAAEGSMRDALSLM 245 >gi|221198096|ref|ZP_03571142.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M] gi|221182028|gb|EEE14429.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M] Length = 818 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|23010978|ref|ZP_00051486.1| COG0470: ATPase involved in DNA replication [Magnetospirillum magnetotacticum MS-1] Length = 154 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH E L + SGR+ HA L G +GIGKATL +R+A L Sbjct: 7 PRETSDLFGHATAETALLDAWNSGRLAHAWLLCGPKGIGKATLAYRFARFALAGGGEGGG 66 Query: 68 PVRMCNPD----PCSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFL 122 D P P +++AS D + + K K R+ I V+++R I +F+ Sbjct: 67 LFGDSPTDLEIRPDHPVFRRIASQGHADLEAVERGWADDKKSKLRSEIVVEDVRGIGHFM 126 Query: 123 SLTANTGYWRVIMIDPVD 140 SLT G WRV++ID D Sbjct: 127 SLTPAEGGWRVVIIDSAD 144 >gi|253577375|ref|ZP_04854692.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251843275|gb|EES71306.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 589 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P Q + G + I + L R+ HA LF G +G GK + A V Sbjct: 8 RAWRPQSFQDMVGQQHIIRTLQNAIREQRLSHAYLFSGPRGTGKTSAAKILAKAVNCEKG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ + A+ D L + + N V+EIR +R + Sbjct: 68 PAAEPCNEC--DAC----RRITAGAVMDVLEIDAASNR---------GVEEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +V +ID V + A NALLK+LEEPP V+FIL + + +T+ SRC Sbjct: 113 YAPTEVRQKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRLPATVISRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAAY---GSVARAIKIL 228 F +S L + E+L+++ G +++++ ++ A G + A+ IL Sbjct: 173 FDFRRVS---LEEQSERLRMICEQEGIEAEKEAIEYIARLSDGGMRDALSIL 221 >gi|237739475|ref|ZP_04569956.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] gi|229423083|gb|EEO38130.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] Length = 485 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G +I K L + M HA LF G +G+GK T+ A V N Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCLNL 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C C K + D + + + N ++DEIR ++ + Sbjct: 67 GEDGEPCNECKN--C----KAINEGRFSDLIEIDAASNR---------SIDEIRSLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F +L ++ L+ + Sbjct: 172 RYDFKALDIEDMKSGLKHI 190 >gi|229552944|ref|ZP_04441669.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|258540445|ref|YP_003174944.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus Lc 705] gi|229313688|gb|EEN79661.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|257152121|emb|CAR91093.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus Lc 705] Length = 565 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G + I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + +L D + + + N G VDEIR IR Sbjct: 68 ED--------GEPDNTCEICQAINDGSLTDVIEIDAASN--NG-------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|329734326|gb|EGG70640.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU028] Length = 568 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + +D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNNDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 R F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|312171607|emb|CBX79865.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora ATCC BAA-2158] Length = 643 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTEVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + + L+ + Sbjct: 170 CLQFHLKALDQEQIRGQLQHV 190 >gi|28898953|ref|NP_798558.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus RIMD 2210633] gi|153838686|ref|ZP_01991353.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810] gi|260878849|ref|ZP_05891204.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034] gi|260896229|ref|ZP_05904725.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466] gi|28807172|dbj|BAC60442.1| DNA polymerase III, subunits gamma and tau [Vibrio parahaemolyticus RIMD 2210633] gi|149747906|gb|EDM58778.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810] gi|308088878|gb|EFO38573.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466] gi|308094301|gb|EFO43996.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034] Length = 711 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL------EQL----KIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L EQ+ K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+ Q+A + +D L++ I Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLAAN------GVEWDGLLQQI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|170733187|ref|YP_001765134.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia MC0-3] gi|169816429|gb|ACA91012.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia MC0-3] Length = 793 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|27469225|ref|NP_765862.1| DNA polymerase III gamma and tau subunits [Staphylococcus epidermidis ATCC 12228] gi|57866110|ref|YP_187710.1| DNA polymerase III, gamma and tau subunits [Staphylococcus epidermidis RP62A] gi|251811247|ref|ZP_04825720.1| DNA-directed DNA polymerase [Staphylococcus epidermidis BCM-HMP0060] gi|282874603|ref|ZP_06283485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis SK135] gi|293367695|ref|ZP_06614347.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus epidermidis M23864:W2(grey)] gi|27316774|gb|AAO05949.1|AE016751_244 DNA polymerase III gamma and tau subunits [Staphylococcus epidermidis ATCC 12228] gi|57636768|gb|AAW53556.1| DNA polymerase III, gamma and tau subunits [Staphylococcus epidermidis RP62A] gi|251805208|gb|EES57865.1| DNA-directed DNA polymerase [Staphylococcus epidermidis BCM-HMP0060] gi|281296527|gb|EFA89039.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis SK135] gi|291318265|gb|EFE58659.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus epidermidis M23864:W2(grey)] Length = 568 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + +D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNNDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 R F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|147674747|ref|YP_001216522.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O395] gi|146316630|gb|ABQ21169.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O395] gi|227012870|gb|ACP09080.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae O395] Length = 692 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + C +++ D L + + K V++ R + + Sbjct: 68 ITATSCGQCA------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 220 >gi|294850658|ref|ZP_06791381.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754] gi|294822495|gb|EFG38941.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754] Length = 565 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|260776327|ref|ZP_05885222.1| DNA polymerase III delta prime subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607550|gb|EEX33815.1| DNA polymerase III delta prime subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 320 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R +A L E+G+G L R++ + + +++ C+ + M SH Sbjct: 21 SDRFSNAALLTAEEGLGVEQLVERFSEAAMCS-NYASEACGFCHS------CQLMKSHNH 73 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ + + P K GK ITV++IR+ ++ R+ +I+P + MN +AAN Sbjct: 74 PDY----HLVKPEKEGK---TITVEQIRQCNRLAQESSQLSGRRLFVIEPAEAMNDSAAN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP +F+L+SH + +L TI SRC Sbjct: 127 ALLKTLEEPSSSCMFLLVSHKAHQLLPTITSRC 159 >gi|262041601|ref|ZP_06014797.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041074|gb|EEW42149.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 361 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|238027056|ref|YP_002911287.1| DNA polymerase III subunits gamma and tau [Burkholderia glumae BGR1] gi|237876250|gb|ACR28583.1| DNA polymerase III, subunits gamma and tau [Burkholderia glumae BGR1] Length = 861 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVMHLE--RILG 192 >gi|322375394|ref|ZP_08049907.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300] gi|321279657|gb|EFX56697.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300] Length = 554 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCYICQAVTEGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSI 177 >gi|294838670|ref|ZP_06783353.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6013113] Length = 420 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|317047210|ref|YP_004114858.1| DNA polymerase III subunits gamma and tau [Pantoea sp. At-9b] gi|316948827|gb|ADU68302.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. At-9b] Length = 650 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + LE Q +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRQQLEHILQQEQIAAEPRALQLLARAAEGSMRDALSL 220 >gi|254478363|ref|ZP_05091742.1| DNA polymerase III, subunits gamma and tau, putative [Carboxydibrachium pacificum DSM 12653] gi|214035721|gb|EEB76416.1| DNA polymerase III, subunits gamma and tau, putative [Carboxydibrachium pacificum DSM 12653] Length = 495 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 29/208 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---DPCSP--FVKQMA 85 GR+ HA LF G +G GK ++ F+KA V NP +PC+ + + Sbjct: 11 GRIGHAYLFTGTRGTGKTSVA----------KIFAKA-VNCLNPKDGEPCNSCEVCQAIN 59 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 + D L + + N +V+++R +R + + + ++V +ID V ++ Sbjct: 60 TGTTMDVLEIDAASNN---------SVNDVRELRESVIYSPSLTKYKVYIIDEVHMLSTG 110 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIM 204 A NALLK+LEEPP+ V+FIL + + TI SRC F + + + LE++ + Sbjct: 111 AFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIAQNLERICRDS 170 Query: 205 GWDSKRDFVK-IAAY--GSVARAIKILH 229 G + + +K IA Y GS+ AI +L Sbjct: 171 GIQIEENGIKAIALYGNGSMRDAISLLE 198 >gi|157150866|ref|YP_001450197.1| DNA polymerase III subunits gamma and tau [Streptococcus gordonii str. Challis substr. CH1] gi|262282525|ref|ZP_06060293.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA] gi|157075660|gb|ABV10343.1| DNA-directed DNA polymerase III [Streptococcus gordonii str. Challis substr. CH1] gi|262261816|gb|EEY80514.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA] Length = 556 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ K + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICKAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSMAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTKNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIAHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|313114018|ref|ZP_07799572.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf. prausnitzii KLE1255] gi|310623638|gb|EFQ07039.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf. prausnitzii KLE1255] Length = 620 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 126/284 (44%), Gaps = 31/284 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G I L + R+ HA LF G +G GK T F A + L Sbjct: 7 RKWRPQRFEDVVGQRAIVTALKNQITANRVGHAYLFTGVRGTGKTTCAKIFAKAVNCLH- 65 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PV N DPC K + + ++ D + + + N VD+IR +R Sbjct: 66 ------PV---NGDPCGECEICKGIDNGSILDVVEMDAASN---------NGVDDIRDLR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI S Sbjct: 108 DETAYTPSACKYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILS 167 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F + ++ + +E + K+ + + A G++ A+ IL D Sbjct: 168 RCQRYDFTRIGPEDIARRVEYIAGEEKLELSPDGAELIARLADGALRDALSIL--DTCAG 225 Query: 236 ISSYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDFLIEF 277 +++ ID + R + + +I+D L +QD A L + Sbjct: 226 VTAKIDADVVRRMAGVTDRSYLFRISDALEAQDGATALAQLAQL 269 >gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] Length = 562 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 21/190 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + + E + + + SGR+ HA LF G +G GK T+ +A + NP Sbjct: 8 RKWRPLVFEDVVEQEHVVRTIKNTVKSGRVAHAYLFCGTRGTGKTTMAKIFARAINCLNP 67 Query: 63 DFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + DPC+ + + ++ D + + + N +VD +R IR Sbjct: 68 K---------DGDPCNECEVCRGILDESILDVVEIDAASNN---------SVDNVREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 110 EVVYAPSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSR 169 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 170 CQRFDFKKIT 179 >gi|78066597|ref|YP_369366.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. 383] gi|77967342|gb|ABB08722.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 791 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|262066195|ref|ZP_06025807.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] gi|291380102|gb|EFE87620.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] Length = 482 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G +I K L + M HA LF G +G+GK T+ A V N Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCLNL 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C C K + D + + + N ++DEIR ++ + Sbjct: 67 GEDGEPCNECKN--C----KAINEGRFSDLIEIDAASNR---------SIDEIRSLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F +L ++ L+ + Sbjct: 172 RYDFKALDIEDMKSGLKHI 190 >gi|323706282|ref|ZP_08117848.1| DNA polymerase III, delta prime subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534334|gb|EGB24119.1| DNA polymerase III, delta prime subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 319 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++GH++I + ++ SG++ +A LF GE G+GK + +A ++ N S P Sbjct: 2 HKIYGHKNILELFNKIINSGKIANAYLFVGESGLGKEYMAKYFA--MMVNCVKSPKPCFS 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN---- 127 C+ C FV +H D ++ P I VD +R ++ +N Sbjct: 60 CHS--CVQFVS--GNHP--DIFFIE----PDGSS----IKVDTLRN-----TVISNAYIK 100 Query: 128 --TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 Y ++ +I + M + N++LK+LEEPP VLFIL + +L TI SRC +I+ Sbjct: 101 PYNSYKKIFIIKEAEKMTEQSQNSILKTLEEPPLHVLFILTASKMDGLLPTIVSRCETIR 160 Query: 186 FNSLSEN 192 FN S++ Sbjct: 161 FNRESDD 167 >gi|322412086|gb|EFY02994.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 559 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNQCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID + ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEIHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIK 178 Query: 191 ENNLYKAL 198 + + + L Sbjct: 179 QKAIREHL 186 >gi|294783460|ref|ZP_06748784.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] gi|294480338|gb|EFG28115.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] Length = 482 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G +I K L + M HA LF G +G+GK T+ A V N Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCLNL 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C C K + D + + + N ++DEIR ++ + Sbjct: 67 GEDGEPCNECKN--C----KAINEGRFSDLIEIDAASNR---------SIDEIRSLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F +L ++ L+ + Sbjct: 172 RYDFKALDIEDMKSGLKHI 190 >gi|322389826|ref|ZP_08063368.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 903] gi|321143486|gb|EFX38922.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 903] Length = 558 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVARTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNNCYICESITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ + LE L G + D V+I A G + A+ IL Sbjct: 179 LPDIVQHLENILATEGIAYEADAVQIIARRAEGGMRDALSIL 220 >gi|313887429|ref|ZP_07821118.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] gi|312923071|gb|EFR33891.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] Length = 601 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 24/203 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L G++ HA LF G +G+GK + A +L Sbjct: 10 RKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAYLFCGPRGVGKTS-----AARIL---- 60 Query: 64 FSKAPVRMCNPDPCSP-----FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 R N + +P V ALH + Y L+ + +VD+IRR+ Sbjct: 61 -----ARTINCEQLTPQGEACGVCPNCQAALHQRAFNIYELDAASNN-----SVDDIRRL 110 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI Sbjct: 111 NEDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTIL 170 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC F + + + L ++ Sbjct: 171 SRCQVYDFKPIPPEQIAEQLRRV 193 >gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC 35310] gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC 35310] Length = 593 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 20/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + L SG++ HA LF G +G+GK T +A + NP Sbjct: 9 RKYRPMTFDAVVGQSALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q + Y + L+ + +V+ I+ + Sbjct: 69 TADGEACNEC--ESCQAFNEQRS--------YNIFELDAASNN-----SVENIKSLMDQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQ 173 Query: 183 SIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 F ++ N+L +Q I D+ + + A G + A+ + Sbjct: 174 IYDFERMATTDIINHLKNVAQQEGITYEDAALNIIAEKADGGMRDALSV 222 >gi|269202097|ref|YP_003281366.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED98] gi|262074387|gb|ACY10360.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED98] Length = 565 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKMFAKAI----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ K + D + + + N VDEIR IR Sbjct: 63 ---NCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 171 QRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|125625234|ref|YP_001033717.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris MG1363] gi|124494042|emb|CAL99042.1| DNA polymerase III subunits gamma / tau [Lactococcus lactis subsp. cremoris MG1363] gi|300072044|gb|ADJ61444.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris NZ9000] Length = 553 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L + ++ HA LF G +G GK + +A + P+ Sbjct: 17 EMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFA-KAINCPN-------QV 68 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + +L D + L + N VDEIR IR + A+ Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNG---------VDEIREIRDKSTYAASQAT 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR F S++ Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSIT 179 Query: 191 ENNLYKALEQLKIMG------WDSKRDFVKIAAYGSVARAIKIL 228 ++ L KI+G D D + AA G + A+ +L Sbjct: 180 TADIRTYLG--KILGDEGVEFEDKALDVIAKAAEGGMRDALSLL 221 >gi|332176655|gb|AEE12345.1| DNA polymerase III, subunits gamma and tau [Porphyromonas asaccharolytica DSM 20707] Length = 616 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 24/203 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L G++ HA LF G +G+GK + A +L Sbjct: 23 RKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAYLFCGPRGVGKTS-----AARIL---- 73 Query: 64 FSKAPVRMCNPDPCSP-----FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 R N + +P V ALH + Y L+ + +VD+IRR+ Sbjct: 74 -----ARTINCEQLTPQGEACGVCPNCQAALHQRAFNIYELDAASNN-----SVDDIRRL 123 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI Sbjct: 124 NEDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTIL 183 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC F + + + L ++ Sbjct: 184 SRCQVYDFKPIPPEQIAEQLRRV 206 >gi|327393012|dbj|BAK10434.1| DNA polymerase III tau subunit DnaX [Pantoea ananatis AJ13355] Length = 656 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + + LEQ +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALEVDQIRQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL 220 >gi|308185942|ref|YP_003930073.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1] gi|308056452|gb|ADO08624.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1] Length = 689 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L + + + LE Q +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVDQIRQQLEHVLKQEQIESETRALQLLARAADGSMRDALSL 220 >gi|300214871|gb|ADJ79287.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT 5713] Length = 579 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L + + HA LF G +G GK + +A + N Sbjct: 8 RVWRPQRFMDLVGQEMVTRTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI--NCR 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 FSK +PC+ K + L+D + + + N V+EIR IR Sbjct: 66 FSKEG------EPCNECETCKAITEGRLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + L+Q + D + AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLL----DQVIS 226 >gi|259909222|ref|YP_002649578.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96] gi|224964844|emb|CAX56366.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96] gi|283479272|emb|CAY75188.1| DNA polymerase III, tau and gamma subunits [Erwinia pyrifoliae DSM 12163] Length = 643 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 29/259 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL KAL+Q +I G + + G+ RA+++L D S Sbjct: 170 CLQFHL---------KALDQEQIRGQLAH--VLHAENIGAETRALQLLARAAD---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIA 259 D + + Q A+ + Q A Sbjct: 216 DALSLTDQAIAMGQGQVTA 234 >gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium BAL199] gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium BAL199] Length = 610 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P + L G E + + L + R+HHA + G +G+GK T A G Sbjct: 22 VLARKYRPQTFEDLVGQETLVRTLRNAFAQNRIHHAFVLTGVRGVGKTTTARIVAKGLNC 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P PC +A L +TG VD+IR I Sbjct: 82 IGPDGTGGPTMT----PCGTCDNCVAIAGDRHVDVLEMDAASRTG-------VDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V ++D V + RNA NALLK+LEEPP+ V FI + + T+ S Sbjct: 131 ESVRYRPVSARYKVYIVDEVHMLTRNAFNALLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RC 181 RC Sbjct: 191 RC 192 >gi|21282162|ref|NP_645250.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MW2] gi|49485342|ref|YP_042563.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|300911028|ref|ZP_07128477.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH70] gi|21203598|dbj|BAB94298.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MW2] gi|49243785|emb|CAG42210.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|300887207|gb|EFK82403.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH70] Length = 565 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSELKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 R F ++S N + + L + +I D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|194336682|ref|YP_002018476.1| DNA polymerase III, subunits gamma and tau [Pelodictyon phaeoclathratiforme BU-1] gi|194309159|gb|ACF43859.1| DNA polymerase III, subunits gamma and tau [Pelodictyon phaeoclathratiforme BU-1] Length = 401 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 19/243 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + PV + E + + + GR+ H +F G +G+GK T +A + Sbjct: 5 VIARKYRPVKFADITAQEHVTRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 A +PC + DF SLN + +VD+IR +R Sbjct: 65 QKMMEDAEYLQQVTEPCGE------CESCRDF-DAGTSLNIAEFDAASNNSVDDIRTLRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI SR Sbjct: 118 NVRYGPQKGTYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 Query: 181 CLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 C F + + K L EQ+ + G + A GS+ A IL D+ Sbjct: 178 CQRFNFKRIPLEEIQKQLQFICDAEQITVDG--DALQLIGRKAQGSMRDAQSIL----DQ 231 Query: 235 IIS 237 +I+ Sbjct: 232 VIA 234 >gi|326407768|gb|ADZ64839.1| DNA polymerase III subunit gamma/tau [Lactococcus lactis subsp. lactis CV56] Length = 552 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L + ++ HA LF G +G GK + +A + P+ Sbjct: 17 EMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFA-KAINCPN-------QV 68 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + +L D + L + N VDEIR IR + A+ Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNG---------VDEIREIRDKSTYAASQAT 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR F S++ Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSIT 179 Query: 191 ENNLYKALEQLKIMG-----WDSKR-DFVKIAAYGSVARAIKIL 228 ++ L KIM +D K D + AA G + A+ +L Sbjct: 180 TGDIRTYL--AKIMADEGLEFDGKALDVIAKAAEGGMRDALSLL 221 >gi|323701680|ref|ZP_08113352.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum nigrificans DSM 574] gi|323533453|gb|EGB23320.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum nigrificans DSM 574] Length = 542 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I + L +GR+ HA LF G +G GK T A + Sbjct: 8 RTWRPQNFKDIVGQQHITRTLQNALVNGRVAHAYLFCGPRGTGKTTTAKVLAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +R + +PC+ + + + D + + + N +DEIR +R Sbjct: 63 ---NCLRGVDGEPCNECENCRAVNEGSAVDVVEIDAASN---------RGIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + G +V +ID V + A NALLK+LEEPP V+F+L + + + TI SRC Sbjct: 111 VKFTPSMGRRKVYIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKI-MGWDSKRD---FVKIAAYGSVARAIKIL 228 F + + + L+++ G + + + + AA G + A+ IL Sbjct: 171 QRFDFRRIKPEEMVQRLKEVAAGSGIEVEEEALWLIAKAAEGGLRDALSIL 221 >gi|116513142|ref|YP_812049.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris SK11] gi|116108796|gb|ABJ73936.1| DNA polymerase III, tau subunit [Lactococcus lactis subsp. cremoris SK11] Length = 553 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L + ++ HA LF G +G GK + +A + P+ Sbjct: 17 EMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFA-KAINCPN-------QV 68 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + +L D + L + N VDEIR IR + A+ Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNG---------VDEIREIRDKSTYAASQAT 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR F S++ Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSIT 179 Query: 191 ENNLYKALEQLKIMG------WDSKRDFVKIAAYGSVARAIKIL 228 ++ L KI+G D D + AA G + A+ +L Sbjct: 180 TADIRTYLG--KILGDEGVEFEDKALDVIAKAAEGGMRDALSLL 221 >gi|161524619|ref|YP_001579631.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|189350625|ref|YP_001946253.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|160342048|gb|ABX15134.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|189334647|dbj|BAG43717.1| DNA polymerase III gamma and tau subunit [Burkholderia multivorans ATCC 17616] Length = 821 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|328676240|gb|AEB27110.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida Fx1] Length = 546 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 38/313 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKIG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L D+ I Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 226 S-------FCSGELKQAQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSA 278 Query: 297 EA--DQIAQIYFS 307 +A D+IA+I+F+ Sbjct: 279 DAVLDKIAEIWFA 291 >gi|302332191|gb|ADL22384.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus JKD6159] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|319655048|ref|ZP_08009118.1| DnaX protein [Bacillus sp. 2_A_57_CT2] gi|317393272|gb|EFV74040.1| DnaX protein [Bacillus sp. 2_A_57_CT2] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + K L ++ HA LF G +G GK + A V + KAPV Sbjct: 18 VVGQEHVTKTLQNALLQEKISHAYLFSGPRGTGKTSAAKILAKAV----NCEKAPV---- 69 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + ++ D + + + N V+EIR IR + N + Sbjct: 70 TEPCNECAACRGITDGSIPDVIEIDAASNN---------GVEEIRDIRDKVKYAPNAVKY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V ++D V ++ A NALLK+LEEPP+ V+FIL + I TI SRC F ++ Sbjct: 121 KVYIVDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRIT 179 >gi|304380492|ref|ZP_07363170.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341010|gb|EFM06932.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 555 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|302668629|ref|YP_003833077.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio proteoclasticus B316] gi|302397593|gb|ADL36495.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio proteoclasticus B316] Length = 401 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 22/234 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + I L + HA LF G +G GK TL +A + Sbjct: 8 RKFRPQSFDEVQGQDYIVTALRNQVKHDMVSHAYLFHGTRGTGKTTLARIFARAINCENT 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ F K AS + + + + + N K V ++RRI +S Sbjct: 68 INGNPCGECD------FCKSYASGSDANIIEIDAASNSK---------VVDVRRIIAEVS 112 Query: 124 LTANTGYWRVIMIDPVD---GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G W+V +ID V G A + LLK+LEEPP +FIL + + +TI SR Sbjct: 113 YPPMKGKWKVYIIDEVHMLYGKRGEAFDILLKTLEEPPPYAVFILATTEMNKVPATILSR 172 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 C F +S E +L E +I ++ ++ A GS+ A+ IL + Sbjct: 173 CQQYAFRRISIDIIEQHLRMVTEAERIPAEETALQYIAKVADGSMRDALSILEH 226 >gi|283469770|emb|CAQ48981.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus ST398] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|188996347|ref|YP_001930598.1| DNA polymerase III delta' subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931414|gb|ACD66044.1| DNA polymerase III delta' subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 312 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRM 71 ++ GHE + + +Y +LL+EG+ IGK L A G + + + V Sbjct: 2 KVIGHEKEKTLIKKYLHKNYDSLSLLYEGKDCIGKKLLALYTARGFLCEKKEGFGCGV-- 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKW-----RTVITVDEIRRIRYFLSLTA 126 CN V + S+ +Y + +L P I +D+IR FLSL + Sbjct: 60 CND---CKLVNNLISN-----VYENTNLTPHPNIMLIQSDNREIKIDQIREAISFLSLKS 111 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + G +V++I+ + +N +ANALLK+LEEPP L IL + +L TI SR I+F Sbjct: 112 SKG--KVLIIEKAENLNTESANALLKTLEEPPSNTLIILTTSNQNQLLPTIVSRLKKIRF 169 Query: 187 NSLSENNLYKAL 198 LS ++ L Sbjct: 170 RKLSHQDVVDIL 181 >gi|218442581|ref|YP_002380902.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7424] gi|218175352|gb|ACK74083.1| DNA polymerase III delta prime subunit [Cyanothece sp. PCC 7424] Length = 306 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 16/248 (6%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 FLS Y + A LF G +GIGK T A +L + + P + +P Sbjct: 33 FLSPYI---PLAPAYLFTGIEGIGKITFAKLLAQCILNTDNITNYP-NILWIEPTYLQQG 88 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 ++ S ++ L + + P +I ++++++I F+S + + +++I+ D + Sbjct: 89 ELISLSIAKRENLEFKIAP-------IIRIEQVKQIIQFISNSPISNERLLVIIEKADCL 141 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N AANALLKSLEE P K FIL S +L+T+ SRC + F L+++N+ + L + Sbjct: 142 NPIAANALLKSLEE-PGKATFILTSSNPEKLLATVISRCQIVPFFPLNDSNIREILNK-- 198 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADEL 262 G+ + V A GS +AI I H D I ++ I + ALQ +++ Sbjct: 199 -CGYADISNEVIELAQGSPGKAI-IYHQLIDSIPDELLNCPKIGKVSNALQLAKEMTKYS 256 Query: 263 LSQDQKIA 270 L Q +A Sbjct: 257 LEQQLLLA 264 >gi|310766874|gb|ADP11824.1| DNA polymerase III subunit tau [Erwinia sp. Ejp617] Length = 640 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 29/259 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL KAL+Q +I G + + G+ RA+++L D S Sbjct: 170 CLQFHL---------KALDQEQIRGQLAH--VLHAENIGAETRALQLLARAAD---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIA 259 D + + Q A+ + Q A Sbjct: 216 DALSLTDQAIAMGQGQVTA 234 >gi|238919040|ref|YP_002932554.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri 93-146] gi|238868608|gb|ACR68319.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri 93-146] Length = 652 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D L + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 170 CLQFHLRALDHEQIRAQLEKI 190 >gi|157369378|ref|YP_001477367.1| DNA polymerase III subunits gamma and tau [Serratia proteamaculans 568] gi|157321142|gb|ABV40239.1| DNA polymerase III, subunits gamma and tau [Serratia proteamaculans 568] Length = 650 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +L + + LE Sbjct: 170 CLQFHLKALDVDQIRSQLE 188 >gi|134295858|ref|YP_001119593.1| DNA polymerase III subunits gamma and tau [Burkholderia vietnamiensis G4] gi|134139015|gb|ABO54758.1| DNA polymerase III, subunits gamma and tau [Burkholderia vietnamiensis G4] Length = 880 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 27/237 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMGWDS---KRDFVKI---AAYGSVARAIKI----LHYDCDKIISSYI 240 + LE +I+G + ++ +++ AA GS+ A+ + + Y +++ S + Sbjct: 183 IVSHLE--RILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAV 237 >gi|49482703|ref|YP_039927.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257424588|ref|ZP_05601017.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427254|ref|ZP_05603656.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322] gi|257429890|ref|ZP_05606277.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257432593|ref|ZP_05608956.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410] gi|257435498|ref|ZP_05611549.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|282903061|ref|ZP_06310954.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus C160] gi|282907450|ref|ZP_06315298.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282907798|ref|ZP_06315638.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912683|ref|ZP_06320479.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WBG10049] gi|282913303|ref|ZP_06321095.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M899] gi|282918257|ref|ZP_06325998.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C427] gi|282922931|ref|ZP_06330621.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C101] gi|283959906|ref|ZP_06377347.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97] gi|293498350|ref|ZP_06666204.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus 58-424] gi|293509291|ref|ZP_06668008.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809] gi|293550558|ref|ZP_06673230.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M1015] gi|295427009|ref|ZP_06819648.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus EMRSA16] gi|297588779|ref|ZP_06947420.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus MN8] gi|49240832|emb|CAG39499.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257273606|gb|EEV05708.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053] gi|257276885|gb|EEV08336.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322] gi|257280371|gb|EEV10958.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257283472|gb|EEV13604.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410] gi|257286094|gb|EEV16210.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|282315152|gb|EFB45538.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C101] gi|282317954|gb|EFB48322.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C427] gi|282323403|gb|EFB53722.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M899] gi|282324379|gb|EFB54695.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WBG10049] gi|282328362|gb|EFB58635.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330349|gb|EFB59870.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282597520|gb|EFC02479.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus C160] gi|283789498|gb|EFC28325.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97] gi|290919605|gb|EFD96681.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M1015] gi|291097281|gb|EFE27539.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus 58-424] gi|291467930|gb|EFF10439.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809] gi|295129461|gb|EFG59088.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577290|gb|EFH96003.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus MN8] gi|312436435|gb|ADQ75506.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH60] gi|315193216|gb|EFU23615.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|15923468|ref|NP_371002.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50] gi|15926155|ref|NP_373688.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus N315] gi|148266936|ref|YP_001245879.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH9] gi|150392982|ref|YP_001315657.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH1] gi|156978806|ref|YP_001441065.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu3] gi|253315726|ref|ZP_04838939.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005271|ref|ZP_05143872.2| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795401|ref|ZP_05644380.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus A9781] gi|258421451|ref|ZP_05684378.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719] gi|258436850|ref|ZP_05689190.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299] gi|258445643|ref|ZP_05693823.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300] gi|258456009|ref|ZP_05703964.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937] gi|282927511|ref|ZP_06335129.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102] gi|295405726|ref|ZP_06815536.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819] gi|296276913|ref|ZP_06859420.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MR1] gi|297245635|ref|ZP_06929503.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796] gi|13700368|dbj|BAB41666.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus N315] gi|14246246|dbj|BAB56640.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50] gi|147740005|gb|ABQ48303.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945434|gb|ABR51370.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH1] gi|156720941|dbj|BAF77358.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu3] gi|257789373|gb|EEV27713.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus A9781] gi|257842875|gb|EEV67297.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719] gi|257848641|gb|EEV72628.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299] gi|257855593|gb|EEV78528.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300] gi|257862221|gb|EEV84994.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937] gi|282590835|gb|EFB95911.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102] gi|285816177|gb|ADC36664.1| DNA polymerase III subunits gamma and Tau [Staphylococcus aureus 04-02981] gi|294969801|gb|EFG45820.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819] gi|297177621|gb|EFH36872.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796] gi|312828973|emb|CBX33815.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130108|gb|EFT86097.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus CGS03] gi|329725750|gb|EGG62229.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21172] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|258413427|ref|ZP_05681702.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus A9763] gi|257839674|gb|EEV64143.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus A9763] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|242309372|ref|ZP_04808527.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum MIT 98-5489] gi|239523943|gb|EEQ63809.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum MIT 98-5489] Length = 573 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 49/313 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P+ L G E + + LS S R+ HA LF G +G GK T R LQ + Sbjct: 12 YRPMDFDELVGQEAVSRTLSLALESKRLSHAYLFSGLRGSGK-TSSARIFARALQCENGP 70 Query: 66 KA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 KA P +C C SH D + L + + K +D+IR + Sbjct: 71 KAKPCGVCAN--CVAANPHKMSHI--DIIELDGASSRK---------IDDIRDLIEQTKY 117 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 N G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 118 RPNMGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHF 177 Query: 185 KFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII---- 236 +F +S+ N+L L + I D + + + GS+ + +L D++I Sbjct: 178 RFKRISDKSIFNHLKSILHKENITYQDEALNMLIRSGSGSLRDTLTLL----DQVIIYSN 233 Query: 237 --------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA-------FDFLIEFILKE 281 +S + LI+ Q + DE+ +D+K+ F++ E +L E Sbjct: 234 YNITAESCASMLGLINP-------QSLSDFFDEIFKKDKKVLLETIEGFFEYECEMLLDE 286 Query: 282 ICKSAKAAALSGQ 294 + K LS + Sbjct: 287 MSIFLKDKLLSAE 299 >gi|57651359|ref|YP_185408.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus COL] gi|151220654|ref|YP_001331476.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|221142547|ref|ZP_03567040.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452484|ref|ZP_05700492.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948] gi|262049732|ref|ZP_06022598.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus D30] gi|262051991|ref|ZP_06024203.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus 930918-3] gi|282924528|ref|ZP_06332198.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765] gi|284023487|ref|ZP_06377885.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus 132] gi|57285545|gb|AAW37639.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus COL] gi|150373454|dbj|BAF66714.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|257859884|gb|EEV82724.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948] gi|259160120|gb|EEW45152.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus 930918-3] gi|259162194|gb|EEW46770.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus D30] gi|269940049|emb|CBI48425.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus TW20] gi|282592837|gb|EFB97842.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765] gi|302750368|gb|ADL64545.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315196724|gb|EFU27070.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus CGS01] gi|329313196|gb|AEB87609.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus T0131] gi|329725115|gb|EGG61608.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21189] gi|329730706|gb|EGG67087.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21193] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|291165756|gb|EFE27804.1| DNA polymerase III subunit gamma/tau [Filifactor alocis ATCC 35896] Length = 533 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 21/198 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L ++HA LF G +G GK + A V N Sbjct: 7 RVYRPKTFDDIVGQEHITSVLKNQVAEDTVNHAYLFCGPRGTGKTSTAKVLARAV--NCT 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + D + + + N +VD IR IR + Sbjct: 65 GEIKPCYQCKS----------CEQSSLDIIEMDAASNN---------SVDNIRDIRDNIV 105 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +T+ SRC Sbjct: 106 FMPSVSRYKVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFILATTEPQKIPATVLSRCQR 165 Query: 184 IKFNSLSENNLYKALEQL 201 F + ++ L + LE++ Sbjct: 166 FDFKKIDDSILTQQLEKV 183 >gi|258444431|ref|ZP_05692765.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115] gi|282893617|ref|ZP_06301850.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117] gi|257850690|gb|EEV74638.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115] gi|282764303|gb|EFC04430.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 AD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|193077651|gb|ABO12483.2| DNA polymerase III tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii ATCC 17978] Length = 702 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCT------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] Length = 592 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + + L SG++ HA LF G +G+GK T +A + NP Sbjct: 9 RKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAYLFCGPRGVGKTTCARIFARAINCMNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F +Q + Y + L+ + +V+ I+ + Sbjct: 69 TTEGEACGTC--ESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMDQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 F ++ Sbjct: 174 IYDFERMT 181 >gi|298693807|gb|ADI97029.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED133] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|294636821|ref|ZP_06715156.1| DNA polymerase III, delta' subunit [Edwardsiella tarda ATCC 23685] gi|291089964|gb|EFE22525.1| DNA polymerase III, delta' subunit [Edwardsiella tarda ATCC 23685] Length = 327 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 15/180 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 + L+Q+ SGR HHALL +G+G+A+L + A +L Q+P+ ++ C+ Sbjct: 13 QLLAQHQ-SGRGHHALLLHAIEGMGEASLVYALARWLLCQHPEGERS-CGQCH------A 64 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + M + D+ + L + GK + V+ +R+I L A G +++ I + Sbjct: 65 CRLMMAGTHPDW----HCLQAEKGK--NTLGVEPVRQIIEQLQSHAQQGGAKLVWIARCE 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++ AANALLK+LEEPP + F+L + +L T+RSRC + + +E+ L+Q Sbjct: 119 QLSEAAANALLKTLEEPPAQTYFLLSTREPAQLLPTLRSRCFYLHLAAPAESVSLHWLQQ 178 >gi|206560262|ref|YP_002231026.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia J2315] gi|198036303|emb|CAR52199.1| DNA polymerase III subunit gamma [Burkholderia cenocepacia J2315] Length = 787 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|56961819|ref|YP_173541.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus clausii KSM-K16] gi|56908053|dbj|BAD62580.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus clausii KSM-K16] Length = 560 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 17/192 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I K L ++ HA LF G +G GK + A + + Sbjct: 8 RVWRPQLLEDVVGQSHITKTLKNALLQQKLAHAYLFSGPRGTGKTSAAKIVAKAI----N 63 Query: 64 FSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +APV CN C V + + ++ D + + + N G VDEIR IR + Sbjct: 64 CKQAPVAEPCNE--CDACVG-ITNGSVVDVIEIDAASN--NG-------VDEIRDIRDKV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 112 KFAPSEVAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPLTILSRCQ 171 Query: 183 SIKFNSLSENNL 194 F +S L Sbjct: 172 RFDFKPISNEAL 183 >gi|260900002|ref|ZP_05908397.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus AQ4037] gi|308107292|gb|EFO44832.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus AQ4037] Length = 711 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQKHVLTALENALAQNRIHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL------EQL----KIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L EQ+ K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+ Q+A + +D L++ I Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLAAN------GVEWDGLLQQI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|315180754|gb|ADT87668.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii NCTC 11218] Length = 700 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 +S N+ L Sbjct: 173 FHLKPISVENIQHQL 187 >gi|311108171|ref|YP_003981024.1| DNA polymerase III subunits gamma and tau [Achromobacter xylosoxidans A8] gi|310762860|gb|ADP18309.1| DNA polymerase III, subunits gamma and tau [Achromobacter xylosoxidans A8] Length = 728 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 20/198 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 13 RSFD-----TLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C C+ ++ S D+L L + N V+E+ ++ Sbjct: 68 ITSKPCGVCRA--CT----EIDSGRFVDYLELDAASN---------RGVEEMTQLLEQAV 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL Sbjct: 113 YAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL 201 + +++ L+ + Sbjct: 173 FNLKQMPADSIVGHLQAV 190 >gi|301347172|ref|ZP_07227913.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB056] gi|301511423|ref|ZP_07236660.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB058] gi|301594146|ref|ZP_07239154.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB059] Length = 417 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281720|gb|EDT47154.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 562 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P Sbjct: 16 EMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCP-------HQV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICHDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] Length = 478 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + ++K + + H +F G +G GK TL A + N + Sbjct: 6 RKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSL--NCE 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K V CN C +++ D + L + N +DEIRRIR + Sbjct: 64 NRKG-VEPCNS--CRA-CREIDEGTFMDVIELDAASNR---------GIDEIRRIRDAVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILH 229 +F ++ + + K L+++ + G + R+ F+ A G + A+ +L Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 >gi|152980371|ref|YP_001353675.1| DNA polymerase III subunit delta' [Janthinobacterium sp. Marseille] gi|151280448|gb|ABR88858.1| DNA polymerase III delta' subunit [Janthinobacterium sp. Marseille] Length = 344 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 17/204 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC----------NPD--PCS 78 R+ HA+LF G +GIGK +A +L + P C +PD Sbjct: 22 RLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACGSCIACGWFTQYSHPDYRRVR 81 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMID 137 P + A + + + KT K + I +D+IR + F++++ + RV+++ Sbjct: 82 PEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRALGDFMNISTHRSGMRVVVLY 141 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 P + +N AAN+LLK LEEPP + +F+L+S++ +L TI SRC + + Sbjct: 142 PAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGRDEALQW 201 Query: 198 LEQLKIM---GWDSKRDFVKIAAY 218 L+ ++ GW +++ +AA+ Sbjct: 202 LKSQQVSEADGWLAEQGGAPLAAF 225 >gi|15674176|ref|NP_268351.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. lactis Il1403] gi|12725258|gb|AAK06292.1|AE006448_10 DNA polymerase III, subunits beta and tau [Lactococcus lactis subsp. lactis Il1403] Length = 552 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L + ++ HA LF G +G GK + +A + P+ Sbjct: 17 EMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFA-KAINCPN-------QV 68 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + +L D + L + N VDEIR IR + A+ Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNG---------VDEIREIRDKSTYAASQAT 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR F S++ Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSIT 179 Query: 191 ENNLYKALEQLKIMG-----WDSKR-DFVKIAAYGSVARAIKIL 228 ++ L KIM +D K D + AA G + A+ +L Sbjct: 180 TGDIRTYL--AKIMADEGLEFDGKALDVIAKAAEGGMRDALSLL 221 >gi|220932868|ref|YP_002509776.1| DNA polymerase III, delta prime subunit [Halothermothrix orenii H 168] gi|219994178|gb|ACL70781.1| DNA polymerase III, delta prime subunit [Halothermothrix orenii H 168] Length = 326 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 19/217 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G K L + R++HA LF G G+GK L F++A + + Sbjct: 6 IIGQNGAIKILKEELRDNRINHAYLFNGRDGVGKKLLAFQFARAINCHNKVD-------- 57 Query: 74 PDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + + H H L L +N I +D+IR + + + Sbjct: 58 -DSCGQCMACKKIDHFNHPDLKLIEPVN-------NSIKIDQIRNFQKEIVYKPYESKKK 109 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D M AAN+LLK+LEEPP + IL+ + STI SRC I+ ++++ Sbjct: 110 IYIIDGADTMTLEAANSLLKTLEEPPHYAVIILLVEDLNKLPSTIISRCQQIQLSNIARE 169 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + L I D K + A GS+ A+K++ Sbjct: 170 IIKEYLINKGI--GDKKAHLIATLARGSIGDALKLVE 204 >gi|283768194|ref|ZP_06341108.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus H19] gi|283461139|gb|EFC08224.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus H19] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|167038707|ref|YP_001661692.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X514] gi|300913734|ref|ZP_07131051.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X561] gi|307723250|ref|YP_003903001.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp. X513] gi|166852947|gb|ABY91356.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X514] gi|300890419|gb|EFK85564.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X561] gi|307580311|gb|ADN53710.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X513] Length = 518 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 27/234 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L ++ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ + + ++ D L + + N +V+++R +R Sbjct: 67 TD----------GEPCNSCEICQAINNNTTMDVLEIDAASNN---------SVNDVRELR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI S Sbjct: 108 ESVIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILS 167 Query: 180 RCLSIKF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 RC F L NL + I + + I GS+ AI +L Sbjct: 168 RCQRFDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLE 221 >gi|153844006|ref|ZP_01993611.1| DNA polymerase III, subunits gamma and tau [Vibrio parahaemolyticus AQ3810] gi|149745272|gb|EDM56523.1| DNA polymerase III, subunits gamma and tau [Vibrio parahaemolyticus AQ3810] Length = 290 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+HHA LF G +G+GK ++G +A + + P C +++ D Sbjct: 7 RLHHAYLFSGTRGVGKTSIGRLFAKGLNCETGITATPCGEC------ATCREIDEGRFVD 60 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L + + K V++ R + + G ++V +ID V ++R++ NALL Sbjct: 61 LLEIDAASRTK---------VEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALL 111 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWD 207 K+LEEPP+ V F+L + + TI SRCL +S +++++ L+ Q ++ Sbjct: 112 KTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVDDIHQQLDYILGQEQVSAES 171 Query: 208 SKRDFVKIAAYGSVARAIKI 227 + AA GS+ A+ + Sbjct: 172 KALGMISHAADGSMRDALSL 191 >gi|297516879|ref|ZP_06935265.1| DNA polymerase III subunits gamma and tau [Escherichia coli OP50] Length = 435 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|118496780|ref|YP_897830.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. novicida U112] gi|194324539|ref|ZP_03058311.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis subsp. novicida FTE] gi|118422686|gb|ABK89076.1| DNA polymerase III, gamma/tau subunits [Francisella novicida U112] gi|194321374|gb|EDX18860.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis subsp. novicida FTE] Length = 546 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 38/313 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++HHA LF G +G+GK T+G A + Sbjct: 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTIGRLLAKCLNCKTG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + C + +++ D + + + +TG V+E + I + Sbjct: 68 VTAEPCNKC--ENCVA----INNNSFIDLIEIDAA--SRTG-------VEETKEILDNIQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC+ Sbjct: 113 YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 Query: 184 IKFNSLSENNLYKALEQLKIM-------GWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + +S+ ++ +QLKI+ + +++ A GS+ A+ +L D+ I Sbjct: 173 LHLKHISQADIK---DQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 226 S-------FCSGELKQAQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSA 278 Query: 297 EA--DQIAQIYFS 307 +A D+IA+I+F+ Sbjct: 279 DAVLDKIAEIWFA 291 >gi|90411566|ref|ZP_01219576.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum 3TCK] gi|90327456|gb|EAS43809.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum 3TCK] Length = 759 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/320 (25%), Positives = 131/320 (40%), Gaps = 43/320 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + LS R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHQFSDVVGQSHVLTALSNALAHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGVTATPCGQCG------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL L N + QL + DF +A+ +L + S Sbjct: 170 CLQFHLKHLDNNQIQS---QLSNVLTQENVDFEP--------KALSLLSRAAE---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIADEL------LSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 D + + Q AL Q AD + L+ DQ + FL+E + +A G Sbjct: 216 DALSLTDQAIALGNGQVHADSVSMMLGTLNTDQAL---FLLEAV-----SGGQANTAMGG 267 Query: 295 LEEADQIAQIYFSLVKRVHA 314 LEE + + SL++ + A Sbjct: 268 LEELASVGVEWDSLLRELSA 287 >gi|313141235|ref|ZP_07803428.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|313130266|gb|EFR47883.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] Length = 573 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 21/193 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + + LS S R+ HA LF G +G GK T R LQ KA Sbjct: 5 ELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGK-TSSARIFARALQCEKGPKA----- 58 Query: 73 NPDPCSPFVKQMAS--HALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 PC +A+ H + D + L + + K +D+IR + N Sbjct: 59 --KPCGVCANCIAANPHKMRHIDIIELDGASSRK---------IDDIRDLIEQTKYHPNM 107 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR +F Sbjct: 108 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR 167 Query: 189 LSENNLYKALEQL 201 +SE N+++ L+ + Sbjct: 168 ISEKNIFEHLKNI 180 >gi|319787590|ref|YP_004147065.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1] gi|317466102|gb|ADV27834.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1] Length = 341 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 26/179 (14%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC---------------NP 74 SGR+ HALL G G+GK + A +VL + S+A R C +P Sbjct: 23 SGRLGHALLLCGPAGLGKRAVIEALAQYVLCD---SRADGRACGRCRSCELFATRTQRDP 79 Query: 75 DPCSP--FVKQMASHALH-DFLYLSYS--LNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 P + Q H+ H D +++ Y L P + RT I ++++R++ L ++A+ Sbjct: 80 VETRPDGSLAQPNGHSAHPDLIFVGYEWRLKPTPARMRTEIVIEQMRQLSERLEVSASFT 139 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKFN 187 RV +++P D +N +A NA+LK+LEEP P + L+ L+S + + +TIRSRC ++ Sbjct: 140 S-RVAVVEPADAVNYSAWNAILKTLEEPLPGRYLW-LVSASPARLPATIRSRCQRLEMR 196 >gi|307312153|ref|ZP_07591789.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W] gi|306907655|gb|EFN38157.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W] Length = 437 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] Length = 478 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + ++K + + H +F G +G GK TL A + N + Sbjct: 6 RKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSL--NCE 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K V CN C +++ D + L + N +DEIRRIR + Sbjct: 64 NRKG-VEPCNS--CRA-CREIDEGTFMDVIELDAASNR---------GIDEIRRIRDAVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILH 229 +F ++ + + K L+++ + G + R+ F+ A G + A+ +L Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 >gi|260365299|ref|ZP_05777856.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus K5030] gi|308115467|gb|EFO53007.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus K5030] Length = 639 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL------EQL----KIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L EQ+ K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+ Q+A + +D L++ I Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLAAN------GVEWDGLLQQI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|15675296|ref|NP_269470.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes M1 GAS] gi|71910925|ref|YP_282475.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes MGAS5005] gi|9789547|gb|AAF98348.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes] gi|13622473|gb|AAK34191.1| DNA polymerase III subunits gamma / tau [Streptococcus pyogenes M1 GAS] gi|71853707|gb|AAZ51730.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS5005] Length = 556 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|329727982|gb|EGG64429.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU144] Length = 568 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + +D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNNDVIDIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 R F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|56807590|ref|ZP_00365500.1| COG2812: DNA polymerase III, gamma/tau subunits [Streptococcus pyogenes M49 591] Length = 334 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|330446409|ref|ZP_08310061.1| DNA polymerase III, delta' subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490600|dbj|GAA04558.1| DNA polymerase III, delta' subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 320 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 17/170 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+HH +L +G G+ L + A VL QN + P +C+ C F + SH Sbjct: 21 RLHHGILLLAVKGSGRDVLARQLAKTVLCQNSE--TEPCGVCHS--CKLF--EANSHP-- 72 Query: 91 DFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 DF + + P + GK I VD +R+ + + T+ RVI+I+ D M ANA Sbjct: 73 DF----HVIKPEQEGK---QIGVDAVRQCNRWATETSQLNGQRVILIEHADAMGEAGANA 125 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +LK+LEEPPQ FIL + + ++L TI SRC + +E N+ + +E Sbjct: 126 ILKTLEEPPQGCQFILTAQSLDSLLPTIVSRCNKWRLPIPAEVNVKQWVE 175 >gi|163857866|ref|YP_001632164.1| DNA polymerase III subunits gamma and tau [Bordetella petrii DSM 12804] gi|163261594|emb|CAP43896.1| DNA polymerase III subunit Tau [Bordetella petrii] Length = 736 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ S R+HHA LF G +G+GK TL A + Sbjct: 32 VLARKWRPRSFDTLVGQDHVVRALTHALDSQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D+L L + N V+E+ ++ Sbjct: 92 ETGITSKPCGQCRA--CT----EIDAGRFVDYLELDAASN---------RGVEEMTQLLE 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 137 QAVYAPGAGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + + L+ + Sbjct: 197 CLQFNLKQMPPDAIVGHLQAV 217 >gi|296188359|ref|ZP_06856751.1| DNA polymerase III, delta' subunit [Clostridium carboxidivorans P7] gi|296047485|gb|EFG86927.1| DNA polymerase III, delta' subunit [Clostridium carboxidivorans P7] Length = 314 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 28/181 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + R HA + GE GIGK+ + A +L + Sbjct: 6 IIGHENIKFQIVSSIKQQRFSHAHIIVGEDGIGKSFIARETAIEILGKSEN--------- 56 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 KQ A + +F K GK + I +DE++ I + G +V Sbjct: 57 --------KQYAD--IVEF---------KLGKGKKSIGIDEVKNIIEETTKKPYEGNKKV 97 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++ D + A NA LK++EEPP+ V IL+ IL TI+SRC + K N LSE Sbjct: 98 IIVYNADKITETAQNAFLKTIEEPPKGVFIILLCEKLELILDTIKSRCQTYKLNRLSEEE 157 Query: 194 L 194 + Sbjct: 158 M 158 >gi|219870298|ref|YP_002474673.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis SH0165] gi|219690502|gb|ACL31725.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis SH0165] Length = 670 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C K + D + + + K V++ R + Sbjct: 65 ETGISADPCGQC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L ++ + + LE Sbjct: 170 CMQFHLRALEQSQIQQHLE 188 >gi|331645656|ref|ZP_08346759.1| DNA polymerase III subunit tau [Escherichia coli M605] gi|331044408|gb|EGI16535.1| DNA polymerase III subunit tau [Escherichia coli M605] Length = 643 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|237808962|ref|YP_002893402.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM 9187] gi|237501223|gb|ACQ93816.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM 9187] Length = 760 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRNFHEVMGQQHVLQALSNALDQGRLHHAYLFSGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D L + + K V++ R + Sbjct: 65 ETGITSRPCGQCS------ACREIDQGNFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L+ + + L+++ Sbjct: 170 CLQFHLKALTREQIVEQLQRV 190 >gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] Length = 478 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + ++K + + H +F G +G GK TL A + N + Sbjct: 6 RKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSL--NCE 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K V CN C +++ D + L + N +DEIRRIR + Sbjct: 64 NRKG-VEPCNS--CRA-CREIDEGTFMDVIELDAASNR---------GIDEIRRIRDAVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILH 229 +F ++ + + K L+++ + G + R+ F+ A G + A+ +L Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 >gi|157154853|ref|YP_001461658.1| DNA polymerase III subunits gamma and tau [Escherichia coli E24377A] gi|157076883|gb|ABV16591.1| DNA polymerase III, tau and gamma subunits [Escherichia coli E24377A] Length = 643 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|260596869|ref|YP_003209440.1| DNA polymerase III subunits gamma and tau [Cronobacter turicensis z3032] gi|260216046|emb|CBA28758.1| DNA polymerase III subunit tau [Cronobacter turicensis z3032] Length = 667 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 87 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 131 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 132 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + + + LE + Sbjct: 192 CLQFHLRALDPDQIRQQLEHV 212 >gi|187923816|ref|YP_001895458.1| DNA polymerase III subunits gamma and tau [Burkholderia phytofirmans PsJN] gi|187715010|gb|ACD16234.1| DNA polymerase III, subunits gamma and tau [Burkholderia phytofirmans PsJN] Length = 893 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|297170606|gb|ADI21632.1| DNA polymerase III, gamma/tau subunits [uncultured myxobacterium HF0130_06F04] Length = 633 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 27/236 (11%) Query: 10 YNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 Y RLF G E + + L+ R+HHA LF G +G+GK T A + N + Sbjct: 10 YRPRLFADIVGQEHVVQTLTNAISMDRVHHAFLFTGARGVGKTTTARILAAAL--NAEGG 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 A + + C+ +AS A D L + + N TG VD IR +R + Sbjct: 68 PATEPVLDDSICA----DIASGACPDVLEIDGASN--TG-------VDNIRELRENVRYL 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +++ +ID V ++ A NALLK+LEEPP V FI + I TI SRC Sbjct: 115 PSRARFKLYIIDEVHMLSTAAFNALLKTLEEPPAHVKFIFATTEPHKIPVTILSRCQRFD 174 Query: 186 FN----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +L +L L++ + V A GSV A+ +L D+++S Sbjct: 175 FRKVPMALLVEHLRSILDKEGLSLGPEAVQAVAREAQGSVRDAMSLL----DQVLS 226 >gi|331651410|ref|ZP_08352435.1| DNA polymerase III subunit tau [Escherichia coli M718] gi|331051151|gb|EGI23203.1| DNA polymerase III subunit tau [Escherichia coli M718] Length = 645 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella melaninogenica ATCC 25845] gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella melaninogenica ATCC 25845] Length = 603 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTADGEACNECESCKAFGEGRS--------YNIFELDAASNN-----SVENIKSLMDQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N+ L+++ Sbjct: 174 IYDFERMTVPNIINHLKRV 192 >gi|50914432|ref|YP_060404.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS10394] gi|209559603|ref|YP_002286075.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes NZ131] gi|50903506|gb|AAT87221.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10394] gi|209540804|gb|ACI61380.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes NZ131] Length = 556 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|157159997|ref|YP_001457315.1| DNA polymerase III subunits gamma and tau [Escherichia coli HS] gi|170021142|ref|YP_001726096.1| DNA polymerase III subunits gamma and tau [Escherichia coli ATCC 8739] gi|157065677|gb|ABV04932.1| DNA polymerase III, tau and gamma subunits [Escherichia coli HS] gi|169756070|gb|ACA78769.1| DNA polymerase III, subunits gamma and tau [Escherichia coli ATCC 8739] Length = 643 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|328474507|gb|EGF45312.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 10329] Length = 711 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 53/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C +++ D L + + K V++ R + + Sbjct: 68 ITATPCGECA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL------EQL----KIMGW------DSKRDFVKIA----AYGSVAR 223 +S +++++ L EQ+ K +G S RD + + A G+ A Sbjct: 173 FHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNGAV 232 Query: 224 AIKILHY-----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ + D D+ I ++ I + + A+ K+ Q+A + +D L++ I Sbjct: 233 QTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLAAN------GVEWDGLLQQI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL L+ A A+ L K A S ++ Q+ + + K RE Sbjct: 286 ATQLHRIAMYQALPASLDRAQPDAEKIELLSK---ALSPQDV---QLYYQIALKGRE 336 >gi|258509261|ref|YP_003172012.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] gi|257149188|emb|CAR88161.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] gi|259650543|dbj|BAI42705.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] Length = 565 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G + I K L +G+ HA LF G +G GK ++ A + L Sbjct: 8 RVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLHL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D PD + + +L D + + + N G VDEIR IR Sbjct: 68 ED--------GEPDNICEICQAINDGSLTDVIEIDAASN--NG-------VDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K L+ +I D+ + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSIL----DQVLS 226 >gi|82542963|ref|YP_406910.1| DNA polymerase III subunits gamma and tau [Shigella boydii Sb227] gi|81244374|gb|ABB65082.1| DNA polymerase III tau and gamma subunits [Shigella boydii Sb227] Length = 623 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|19746336|ref|NP_607472.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS8232] gi|19748530|gb|AAL97971.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes MGAS8232] Length = 556 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|329894943|ref|ZP_08270742.1| DNA polymerase III delta prime subunit [gamma proteobacterium IMCC3088] gi|328922672|gb|EGG30007.1| DNA polymerase III delta prime subunit [gamma proteobacterium IMCC3088] Length = 301 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI VD+IR + F + TAN G +V+++ P +NRNAANALLK LEEPP LIS Sbjct: 85 VIKVDQIRTLLSFGAKTANYGAGKVLILAPASALNRNAANALLKFLEEPPANTYLFLISS 144 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 + + +T+ SRC + +++ + +ALE L+ G +R Sbjct: 145 RTSQLPATVMSRCQKL---TVARPDPTQALEFLQNRGLSDQR 183 >gi|324114695|gb|EGC08663.1| DNA polymerase III [Escherichia fergusonii B253] Length = 643 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|194290032|ref|YP_002005939.1| DNA polymerase III subunits gamma and tau [Cupriavidus taiwanensis LMG 19424] gi|193223867|emb|CAQ69876.1| DNA POLYMERASE III (SUBUNITS TAU AND GAMMA) [Cupriavidus taiwanensis LMG 19424] Length = 769 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 18/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL R L Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLS-RILAKALN 63 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD S +PC +++ S D++ + + N VDE+ Sbjct: 64 CTGPDGSGG----ITAEPCGQCKACQEIDSGRFVDYIEMDAASN---------RGVDEMA 110 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I T Sbjct: 111 QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVT 170 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRCL + ++ L+ + Sbjct: 171 VLSRCLQFNLKQMPPGHIVSHLDHI 195 >gi|167855677|ref|ZP_02478434.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis 29755] gi|167853195|gb|EDS24452.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis 29755] Length = 672 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C K + D + + + K V++ R + Sbjct: 65 ETGISADPCGQC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L ++ + + LE Sbjct: 170 CMQFHLRALEQSQIQQHLE 188 >gi|139473596|ref|YP_001128312.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes str. Manfredo] gi|306827119|ref|ZP_07460411.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes ATCC 10782] gi|134271843|emb|CAM30078.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes str. Manfredo] gi|304430672|gb|EFM33689.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes ATCC 10782] Length = 556 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|78484874|ref|YP_390799.1| DNA-directed DNA polymerase [Thiomicrospira crunogena XCL-2] gi|78363160|gb|ABB41125.1| DNA polymerase III, tau subunit [Thiomicrospira crunogena XCL-2] Length = 696 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 44/313 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + + D + + + K V++ R + Sbjct: 65 EQGITSKPCGVCS------TCRSIDEGRFVDLIEVDAASKTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPVQGRYKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-------- 228 CL L+ + +L L+Q ++ ++ + +A GS ++ IL Sbjct: 170 CLQFNLMRLTLPQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGG 229 Query: 229 ---HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 YD + + +D Q++ L + +A+E + D L E I + Sbjct: 230 GKVQYDAVQAMLGLVD------QQFTLNILSALANE--------SADELKEVIQQLALMG 275 Query: 286 AKAAALSGQLEEA 298 AL+GQL EA Sbjct: 276 VDYTALNGQLIEA 288 >gi|191167488|ref|ZP_03029301.1| DNA polymerase III, tau subunit [Escherichia coli B7A] gi|193064152|ref|ZP_03045236.1| DNA polymerase III, tau subunit [Escherichia coli E22] gi|194428982|ref|ZP_03061514.1| DNA polymerase III, tau subunit [Escherichia coli B171] gi|218693932|ref|YP_002401599.1| DNA polymerase III subunits gamma and tau [Escherichia coli 55989] gi|256020441|ref|ZP_05434306.1| DNA polymerase III subunits gamma and tau [Shigella sp. D9] gi|260842670|ref|YP_003220448.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O103:H2 str. 12009] gi|260853693|ref|YP_003227584.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O26:H11 str. 11368] gi|260866631|ref|YP_003233033.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O111:H- str. 11128] gi|300820283|ref|ZP_07100435.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 119-7] gi|300903259|ref|ZP_07121188.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 84-1] gi|301301624|ref|ZP_07207759.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 124-1] gi|309794794|ref|ZP_07689215.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 145-7] gi|331676144|ref|ZP_08376856.1| DNA polymerase III subunit tau [Escherichia coli H591] gi|190902444|gb|EDV62180.1| DNA polymerase III, tau subunit [Escherichia coli B7A] gi|192929181|gb|EDV82791.1| DNA polymerase III, tau subunit [Escherichia coli E22] gi|194412919|gb|EDX29209.1| DNA polymerase III, tau subunit [Escherichia coli B171] gi|218350664|emb|CAU96356.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli 55989] gi|257752342|dbj|BAI23844.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O26:H11 str. 11368] gi|257757817|dbj|BAI29314.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O103:H2 str. 12009] gi|257762987|dbj|BAI34482.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O111:H- str. 11128] gi|300404698|gb|EFJ88236.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 84-1] gi|300527068|gb|EFK48137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 119-7] gi|300843121|gb|EFK70881.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 124-1] gi|308121447|gb|EFO58709.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 145-7] gi|315059749|gb|ADT74076.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli W] gi|315256300|gb|EFU36268.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 85-1] gi|323178255|gb|EFZ63833.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1180] gi|323184699|gb|EFZ70070.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1357] gi|323379686|gb|ADX51954.1| DNA polymerase III, subunits gamma and tau [Escherichia coli KO11] gi|324116958|gb|EGC10871.1| DNA polymerase III [Escherichia coli E1167] gi|331076202|gb|EGI47484.1| DNA polymerase III subunit tau [Escherichia coli H591] gi|332103974|gb|EGJ07320.1| DNA polymerase III subunit tau [Shigella sp. D9] Length = 643 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|320546449|ref|ZP_08040764.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus ATCC 9812] gi|320448834|gb|EFW89562.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus ATCC 9812] Length = 559 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P Sbjct: 16 EMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCP-------HQV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNQCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTANVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|218553036|ref|YP_002385949.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI1] gi|218359804|emb|CAQ97345.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli IAI1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|15800199|ref|NP_286211.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 EDL933] gi|15829777|ref|NP_308550.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. Sakai] gi|168747852|ref|ZP_02772874.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4113] gi|168754577|ref|ZP_02779584.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4401] gi|168760373|ref|ZP_02785380.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4501] gi|168768427|ref|ZP_02793434.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4486] gi|168777168|ref|ZP_02802175.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4196] gi|168778965|ref|ZP_02803972.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4076] gi|168786323|ref|ZP_02811330.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC869] gi|168798036|ref|ZP_02823043.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC508] gi|195936033|ref|ZP_03081415.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. EC4024] gi|208806002|ref|ZP_03248339.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4206] gi|208815685|ref|ZP_03256864.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4045] gi|208822985|ref|ZP_03263303.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4042] gi|209399465|ref|YP_002269120.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4115] gi|217326165|ref|ZP_03442249.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. TW14588] gi|254791653|ref|YP_003076490.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. TW14359] gi|261223952|ref|ZP_05938233.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. FRIK2000] gi|261256334|ref|ZP_05948867.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. FRIK966] gi|291281376|ref|YP_003498194.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str. CB9615] gi|12513340|gb|AAG54819.1|AE005226_2 DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Escherichia coli O157:H7 str. EDL933] gi|13359980|dbj|BAB33946.1| DNA polymerase III tau and gamma subunits [Escherichia coli O157:H7 str. Sakai] gi|187767563|gb|EDU31407.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4196] gi|188017706|gb|EDU55828.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4113] gi|189002758|gb|EDU71744.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4076] gi|189358057|gb|EDU76476.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4401] gi|189362356|gb|EDU80775.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4486] gi|189369171|gb|EDU87587.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4501] gi|189373554|gb|EDU91970.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC869] gi|189379409|gb|EDU97825.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC508] gi|208725803|gb|EDZ75404.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4206] gi|208732333|gb|EDZ81021.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4045] gi|208737178|gb|EDZ84862.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4042] gi|209160865|gb|ACI38298.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4115] gi|209778388|gb|ACI87506.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778390|gb|ACI87507.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778392|gb|ACI87508.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778394|gb|ACI87509.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778396|gb|ACI87510.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|217322386|gb|EEC30810.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. TW14588] gi|254591053|gb|ACT70414.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. TW14359] gi|290761249|gb|ADD55210.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str. CB9615] gi|320638464|gb|EFX08178.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. G5101] gi|320643845|gb|EFX12968.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H- str. 493-89] gi|320649196|gb|EFX17774.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H- str. H 2687] gi|320656089|gb|EFX24005.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661239|gb|EFX28670.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7 str. USDA 5905] gi|320665215|gb|EFX32308.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. LSU-61] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|28895734|ref|NP_802084.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes SSI-1] gi|28810983|dbj|BAC63917.1| putative DNA polymerase III gamma/tau subunit [Streptococcus pyogenes SSI-1] Length = 557 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 15/178 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 18 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 77 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 180 >gi|295397253|ref|ZP_06807349.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans ATCC 11563] gi|294974500|gb|EFG50231.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans ATCC 11563] Length = 631 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +G+ HA LF G +G GK T + + P+ Sbjct: 24 RVWRPQTFGDIVGQEAVARTLQNAIRTGKTSHAYLFTGPRGTGK-TSAAKILSKAINCPN 82 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ + + L D + + + N V+EIR IR Sbjct: 83 -------QVDGEPCNECEICRAITDGTLPDVIEIDAASNNG---------VEEIRDIRDK 126 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 127 VRYAPTEAQYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 186 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S E+ + L+Q I + + AA G + A+ +L D++IS Sbjct: 187 QRFDFKRISRQSIEDRMAFILDQDGIEFENGALAVIARAANGGMRDALSLL----DQVIS 242 >gi|261341080|ref|ZP_05968938.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC 35316] gi|288316753|gb|EFC55691.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC 35316] Length = 645 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + KI+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SS 238 +S Sbjct: 226 AS 227 >gi|21910574|ref|NP_664842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS315] gi|21904775|gb|AAM79645.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes MGAS315] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 15/178 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179 >gi|237753173|ref|ZP_04583653.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC BAA-430] gi|229375440|gb|EEO25531.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC BAA-430] Length = 587 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 21/200 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P+ L G E + + LS S R+ HA LF G +G GK T R LQ Sbjct: 10 YRPMDFDELVGQEAVSRTLSLALDSKRLSHAYLFSGLRGSGK-TSSARIFARALQCESGP 68 Query: 66 KAPVRMCNPDPCSPFVKQMAS--HALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ PC +A+ H + D + L + N K R D I + +Y Sbjct: 69 RS-------KPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIR-----DLIEQTKYH 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N G +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 117 ----PNIGRFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL 201 +F +S+ ++++ L+++ Sbjct: 173 QHFRFKRISDRSIFEHLKKI 192 >gi|222053486|ref|YP_002535848.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] Length = 576 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 19/223 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLIGQEHVSRTLQNAIDTGRIAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C P ++ D + + N TG VD+IR +R Sbjct: 65 EHGLTTEPCNSC------PSCSEITDGNSVDVFEIDGASN--TG-------VDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSKSRYKIFIIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 C F + L K +++L+ + D ++ + A VAR Sbjct: 170 CQRFDFKRIP---LQKIVDRLRYI-VDQEKVSISSDALAIVAR 208 >gi|193067655|ref|ZP_03048622.1| DNA polymerase III, tau subunit [Escherichia coli E110019] gi|300924198|ref|ZP_07140190.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 182-1] gi|301330662|ref|ZP_07223264.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 78-1] gi|192959067|gb|EDV89503.1| DNA polymerase III, tau subunit [Escherichia coli E110019] gi|300419651|gb|EFK02962.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 182-1] gi|300843323|gb|EFK71083.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 78-1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|110640731|ref|YP_668459.1| DNA polymerase III subunits gamma and tau [Escherichia coli 536] gi|191173688|ref|ZP_03035212.1| DNA polymerase III, tau subunit [Escherichia coli F11] gi|300997166|ref|ZP_07181662.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 200-1] gi|110342323|gb|ABG68560.1| DNA polymerase III subunit tau [Escherichia coli 536] gi|190906046|gb|EDV65661.1| DNA polymerase III, tau subunit [Escherichia coli F11] gi|300304301|gb|EFJ58821.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 200-1] gi|324010642|gb|EGB79861.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 60-1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|327469511|gb|EGF14980.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK330] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIITHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|304315581|ref|YP_003850726.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777083|gb|ADL67642.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 533 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 15/183 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + L +GR+ HA LF G +G GK ++ +A V Sbjct: 7 RKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVNCPNS 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + +++L D + + + N +VD++R +R + Sbjct: 67 VEGEPCNRCQ------ICESANNNSLIDIIEIDAASNN---------SVDDVRELRDNII 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 112 YAPSICKYKVYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQR 171 Query: 184 IKF 186 F Sbjct: 172 FDF 174 >gi|253687471|ref|YP_003016661.1| DNA polymerase III, subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754049|gb|ACT12125.1| DNA polymerase III, subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 685 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LEQ+ Sbjct: 170 CLQFHLKALDAEQIRAHLEQV 190 >gi|83720172|ref|YP_442740.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis E264] gi|83653997|gb|ABC38060.1| DNA polymerase III, subunits gamma and tau, programmed [Burkholderia thailandensis E264] Length = 812 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|82775799|ref|YP_402146.1| DNA polymerase III subunits gamma and tau [Shigella dysenteriae Sd197] gi|309786053|ref|ZP_07680682.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 1617] gi|81239947|gb|ABB60657.1| DNA polymerase III, tau and gamma subunits [Shigella dysenteriae Sd197] gi|308926164|gb|EFP71642.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 1617] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|256751423|ref|ZP_05492301.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus CCSD1] gi|256749642|gb|EEU62668.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus CCSD1] Length = 518 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 23/187 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L ++ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ + + ++ D L + + N +V+++R +R Sbjct: 67 TD----------GEPCNSCEICQAINNNTTMDVLEIDAASNN---------SVNDVRELR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI S Sbjct: 108 ESVIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILS 167 Query: 180 RCLSIKF 186 RC F Sbjct: 168 RCQRFDF 174 >gi|94990691|ref|YP_598791.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS10270] gi|94544199|gb|ABF34247.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10270] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 17 MVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC- 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C + + + +L D + + + N VDEIR IR + + ++V Sbjct: 76 -DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYKV 121 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 194 LYKAL 198 + + L Sbjct: 182 IREHL 186 >gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] Length = 603 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTADGEACNECESCKAFGEGRS--------YNIFELDAASNN-----SVENIKSLMDQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N+ L+++ Sbjct: 174 IYDFERMTVPNIINHLKRV 192 >gi|255037028|ref|YP_003087649.1| DNA polymerase III gamma/tau subunit [Dyadobacter fermentans DSM 18053] gi|254949784|gb|ACT94484.1| DNA polymerase III gamma/tau subunit [Dyadobacter fermentans DSM 18053] Length = 372 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 2/124 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+V+E R I LS+ A G +++++I D MN ++NA+LK LEEPP+K LF+L+S Sbjct: 130 ISVEEARGILRKLSVKAYEGEYKILLIWKPDIMNAASSNAILKILEEPPEKTLFLLVSDQ 189 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 S +L+TI SR I + S++ + L+Q ++ D+ + V + G++A A+K++ Sbjct: 190 SDKLLTTIISRTQRITIPAFSDSEIKSYLKQQEVS--DAVANQVAFLSDGNMAEALKLVQ 247 Query: 230 YDCD 233 + D Sbjct: 248 EEQD 251 >gi|218549862|ref|YP_002383653.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii ATCC 35469] gi|218357403|emb|CAQ90042.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia fergusonii ATCC 35469] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|170767813|ref|ZP_02902266.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii TW07627] gi|170123301|gb|EDS92232.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii TW07627] Length = 640 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|281177640|dbj|BAI53970.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE15] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|171463584|ref|YP_001797697.1| DNA-directed DNA polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193122|gb|ACB44083.1| DNA-directed DNA polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 373 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 32/174 (18%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC----------NPDPCS--PFV 81 +A+L G+ GIGK T A +L +N D + P C +PD S P Sbjct: 25 NAILIHGQSGIGKFTFSVELAKVLLCENADATTKPCNKCEACHWFDTGNHPDFISLVPET 84 Query: 82 -KQMASHALHDFLYLSYSLNPKTGK-------------WRTVITVDEIRRIRYFLSLTAN 127 +++ HA +D +PK K + I+++E R LS+ ++ Sbjct: 85 HRKLLPHADYDG-----DDSPKKAKATRDDESESSEKKEKKNISIEETRHAIENLSIGSH 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RVI+I P++ + ++AN LLKSLEEPP+K +FILI+ +L TIRSRC Sbjct: 140 RGGNRVILIYPLEMLRSDSANTLLKSLEEPPEKTIFILITDRVDRVLPTIRSRC 193 >gi|26246484|ref|NP_752523.1| DNA polymerase III subunits gamma and tau [Escherichia coli CFT073] gi|91209543|ref|YP_539529.1| DNA polymerase III subunits gamma and tau [Escherichia coli UTI89] gi|117622727|ref|YP_851640.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC O1] gi|170681602|ref|YP_001742614.1| DNA polymerase III subunits gamma and tau [Escherichia coli SMS-3-5] gi|218557380|ref|YP_002390293.1| DNA polymerase III subunits gamma and tau [Escherichia coli S88] gi|218688333|ref|YP_002396545.1| DNA polymerase III subunits gamma and tau [Escherichia coli ED1a] gi|227884517|ref|ZP_04002322.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972] gi|293408619|ref|ZP_06652458.1| DNA polymerase III [Escherichia coli B354] gi|300919875|ref|ZP_07136342.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 115-1] gi|300935752|ref|ZP_07150717.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 21-1] gi|301022523|ref|ZP_07186397.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 69-1] gi|301049679|ref|ZP_07196627.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 185-1] gi|306813063|ref|ZP_07447256.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101] gi|331656528|ref|ZP_08357490.1| DNA polymerase III subunit tau [Escherichia coli TA206] gi|26106882|gb|AAN79067.1|AE016756_250 DNA polymerase III subunit tau [Escherichia coli CFT073] gi|91071117|gb|ABE05998.1| DNA polymerase III subunit tau [Escherichia coli UTI89] gi|115511851|gb|ABI99925.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC O1] gi|170519320|gb|ACB17498.1| DNA polymerase III, tau subunit [Escherichia coli SMS-3-5] gi|218364149|emb|CAR01814.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli S88] gi|218425897|emb|CAR06703.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli ED1a] gi|222032264|emb|CAP75003.1| DNA polymerase III subunit tau [Escherichia coli LF82] gi|227838603|gb|EEJ49069.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972] gi|284920279|emb|CBG33338.1| DNA polymerase III subunits gamma and tau [Escherichia coli 042] gi|291471797|gb|EFF14280.1| DNA polymerase III [Escherichia coli B354] gi|294489591|gb|ADE88347.1| DNA polymerase III, tau subunit [Escherichia coli IHE3034] gi|300298572|gb|EFJ54957.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 185-1] gi|300397484|gb|EFJ81022.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 69-1] gi|300413091|gb|EFJ96401.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 115-1] gi|300459052|gb|EFK22545.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 21-1] gi|305853826|gb|EFM54265.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101] gi|307552376|gb|ADN45151.1| DNA polymerase III subunit tau [Escherichia coli ABU 83972] gi|307628061|gb|ADN72365.1| DNA polymerase III subunits gamma and tau [Escherichia coli UM146] gi|312945047|gb|ADR25874.1| DNA polymerase III subunits gamma and tau [Escherichia coli O83:H1 str. NRG 857C] gi|315289907|gb|EFU49297.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 110-3] gi|315294238|gb|EFU53589.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 153-1] gi|315298000|gb|EFU57270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 16-3] gi|323952919|gb|EGB48787.1| DNA polymerase III [Escherichia coli H252] gi|331054776|gb|EGI26785.1| DNA polymerase III subunit tau [Escherichia coli TA206] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|19705135|ref|NP_602630.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328310|ref|ZP_06870839.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713068|gb|AAL93929.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154614|gb|EFG95402.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 484 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G +I K L + M HA LF G +G+GK T+ A V N Sbjct: 7 RKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCLNL 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C C K + D + + + N ++DEIR ++ + Sbjct: 67 KETGEPCNECKN--C----KAINEGRFSDLIEIDAASNR---------SIDEIRSLKEKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 112 NYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F L + LE + Sbjct: 172 RYDFKPLDLEEMKLGLEHI 190 >gi|56460949|ref|YP_156230.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] gi|56179959|gb|AAV82681.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] Length = 681 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLHHAYLFTGTRGVGKTTIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ D L + + K R ++ + R R Sbjct: 65 EEGITATPCGKCS------ACLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYRPTR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 118 --------GRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +LS +++ + L Q ++ + +A GS+ A+ + Sbjct: 170 CLQFNLKALSNDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSL 220 >gi|323945253|gb|EGB41310.1| DNA polymerase III [Escherichia coli H120] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|297569840|ref|YP_003691184.1| DNA polymerase III, delta prime subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925755|gb|ADH86565.1| DNA polymerase III, delta prime subunit [Desulfurivibrio alkaliphilus AHT2] Length = 352 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 26/225 (11%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 + ++ L + G++ HA LF G G+GK T A + D + P+ C Sbjct: 11 QQQAKEILRRAVGGGKLAHAYLFRGPAGVGKKTAARALAAALNCQGDRPE-PLEACGR-- 67 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 P ++ AS DFL + P+ I + ++R ++ L RV+++ Sbjct: 68 -CPSCRKFASANHPDFL----EIMPEGAG----IKIQQVRELKKALQFPPLEAGRRVVVL 118 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 V M R AAN+LLK+LEEPP + +L + IL TI SRC I F L L + Sbjct: 119 GEVHTMRREAANSLLKTLEEPPADTILLLTGDEAGGILPTILSRCQIIPFYPLPVETLAR 178 Query: 197 AL--------EQLKI-MGWDSKRDF-----VKIAAYGSVARAIKI 227 L ++L++ W S F + A GS+ RA ++ Sbjct: 179 TLYQEATDHRQELEMATDWSSDPVFQNCLTLATVAEGSLGRARQL 223 >gi|327473978|gb|EGF19391.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK408] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|323965156|gb|EGB60615.1| DNA polymerase III [Escherichia coli M863] gi|327254797|gb|EGE66413.1| DNA polymerase III, subunits gamma and tau [Escherichia coli STEC_7v] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] Length = 478 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + ++K + + H +F G +G GK TL A + N + Sbjct: 6 RKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSL--NCE 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K V CN C +++ D + L + N +DEIRRIR + Sbjct: 64 NRKG-VEPCNS--CRA-CREIDEGTFMDVIELDAASNR---------GIDEIRRIRDAVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILH 229 +F ++ + + K L+++ + G + R+ F+ A G + A+ +L Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 >gi|46581600|ref|YP_012408.1| DNA polymerase III subunits gamma and tau [Desulfovibrio vulgaris str. Hildenborough] gi|46451023|gb|AAS97668.1| DNA polymerase III, gamma and tau subunits, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311235243|gb|ADP88097.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris RCH1] Length = 616 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E ++ LS+ R+ A LF G +G+GK T+ +A + + + Sbjct: 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL----NCT 65 Query: 66 KAPVRMCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 AP +PC+ + + + +H D + + + N +D+ +R++ + Sbjct: 66 TAPTG----EPCNTCEQCRKVTQGMHVDVVEIDGASN---------RGIDDAKRLKEAIG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + R A NALLK+LEEPP +V F+L + TI SRC Sbjct: 113 YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQH 172 Query: 184 IKFNSLSENNLYKALEQLKIMG 205 F LSE L L K++G Sbjct: 173 FTFTRLSEAGLEAHL--TKVLG 192 >gi|114565618|ref|YP_752772.1| DNA polymerase III subunit delta' [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336553|gb|ABI67401.1| DNA polymerase III, delta prime subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 320 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 27/233 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E L + +G + HA LF G G+GK + +A ++ D Sbjct: 7 IVGQERASSLLQKSLETGTISHAYLFLGPAGVGKMSCARAFAQAIIGRDD---------- 56 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI-RRIRYFLSLTANTGYW 131 + F ++ +H D L L + + R+VI+ ++I +++ +L L Sbjct: 57 -NDAMVFFRE----KIHPDLLIL------EKEEGRSVISKEQISQKLEPWLGLKPYRASQ 105 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV +I M+ AANALLK+LEEPP+ + ILI+ IL TI SRC ++FNSL++ Sbjct: 106 RVAIIRDSQLMSNEAANALLKNLEEPPEYAVIILIAD-DQNILETIVSRCQLVRFNSLAD 164 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-DCDKIISSYIDLI 243 ++ + L ++ + + GSVA AI+ D +KI + ++I Sbjct: 165 KDIEQILRNREVEPLKAAQ--AASLGQGSVATAIRFAQEKDYEKIWETSRNII 215 >gi|325696611|gb|EGD38500.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK160] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|325498242|gb|EGC96101.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii ECD227] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|323976046|gb|EGB71139.1| DNA polymerase III [Escherichia coli TW10509] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|297564866|ref|YP_003683838.1| DNA polymerase III subunits gamma and tau [Meiothermus silvanus DSM 9946] gi|296849315|gb|ADH62330.1| DNA polymerase III, subunits gamma and tau [Meiothermus silvanus DSM 9946] Length = 485 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 25/253 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R P + G E +++ L +GR+ A LF G +G+GK T R + Sbjct: 6 RQARPTTFDEVVGQEHVKEVLLSAIRTGRLAQAYLFSGPRGVGK-TSSARLIAQAVNCIA 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C + C V++ +H D L + + N +V+++R +R + Sbjct: 65 QADKPCGVC--EGCR-LVRE-GNHP--DVLEIDAASN---------NSVEDVRELRERIL 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G +V+++D M+++A NALLK+LEEPP+ V+FI + + TI SR Sbjct: 110 LAPLLGSRKVVILDEAHMMSKSAFNALLKTLEEPPEHVIFIFATTEPERMPPTILSRTQH 169 Query: 184 IKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 +F LSE + + L + LK M ++ + AA VAR D + ++ + L Sbjct: 170 FRFRRLSEAEIVQKLSRILKTMDREA-----EPAALQLVARIADGAMRDAESLLDRLLAL 224 Query: 243 ---IHIPRQEYAL 252 I + + E AL Sbjct: 225 EVPITLAQTEAAL 237 >gi|218703753|ref|YP_002411272.1| DNA polymerase III subunits gamma and tau [Escherichia coli UMN026] gi|293403591|ref|ZP_06647682.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412] gi|298379201|ref|ZP_06989082.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302] gi|300900544|ref|ZP_07118711.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 198-1] gi|218430850|emb|CAR11724.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli UMN026] gi|291429444|gb|EFF02464.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412] gi|298280314|gb|EFI21818.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302] gi|300356025|gb|EFJ71895.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 198-1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|325694344|gb|EGD36257.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK150] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEREGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|300930225|ref|ZP_07145639.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 187-1] gi|300461880|gb|EFK25373.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 187-1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|74311049|ref|YP_309468.1| DNA polymerase III subunits gamma and tau [Shigella sonnei Ss046] gi|73854526|gb|AAZ87233.1| DNA polymerase III tau and gamma subunits [Shigella sonnei Ss046] Length = 641 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|218698618|ref|YP_002406247.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI39] gi|218368604|emb|CAR16341.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli IAI39] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662] gi|167652320|gb|EDR96449.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662] Length = 529 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 25/242 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P + G + I L +GR+ HA LF G +G GK ++ A V ++P Sbjct: 5 RKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNCEHP 64 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + NP +++ + + + + + N VD IR I+ + Sbjct: 65 EDG-------NPCGVCESCREIQEGSSMNVMEIDAASNN---------GVDNIRDIKEQV 108 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 109 QYSPASGKYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ 168 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F+ ++ + L + + + + + +V A GS+ A+ +L D+ I+ Sbjct: 169 RYDFHRITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLL----DQCIAF 224 Query: 239 YI 240 Y+ Sbjct: 225 YL 226 >gi|331681865|ref|ZP_08382498.1| DNA polymerase III subunit tau [Escherichia coli H299] gi|331081067|gb|EGI52232.1| DNA polymerase III subunit tau [Escherichia coli H299] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|270266910|gb|ACZ65286.1| DNA polymerase III subunits gamma and tau [Dickeya dieffenbachiae] gi|270266922|gb|ACZ65287.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii] gi|270266924|gb|ACZ65288.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2019] gi|270266926|gb|ACZ65289.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2093] gi|270266928|gb|ACZ65290.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2094] gi|270266932|gb|ACZ65291.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2098] gi|270266934|gb|ACZ65292.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2187] gi|270266936|gb|ACZ65293.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2188] gi|270266938|gb|ACZ65294.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2189] gi|270266940|gb|ACZ65295.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2190] gi|270266942|gb|ACZ65296.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2191] gi|270266944|gb|ACZ65297.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2192] gi|270266946|gb|ACZ65298.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2222] gi|270266948|gb|ACZ65299.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2225] gi|270266950|gb|ACZ65300.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2234] gi|270266952|gb|ACZ65301.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2235] gi|270266954|gb|ACZ65302.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2236] gi|270266956|gb|ACZ65303.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2237] gi|270266958|gb|ACZ65304.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2238] gi|270266960|gb|ACZ65305.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2239] gi|270266962|gb|ACZ65306.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2240] gi|270266964|gb|ACZ65307.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2241] gi|270266966|gb|ACZ65308.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2276] gi|270266968|gb|ACZ65309.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2277] gi|270266970|gb|ACZ65310.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2278] Length = 178 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 2 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 62 ETGITATPCGQC--DTC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 107 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 166 Query: 181 CLSIKFNSL 189 CL +L Sbjct: 167 CLQFHLKAL 175 >gi|17545910|ref|NP_519312.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum GMI1000] gi|17428205|emb|CAD14893.1| probable dna polymerase III (subunits tau and gamma) protein [Ralstonia solanacearum GMI1000] Length = 728 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 45/283 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 65 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASN--------- 103 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 104 RGVDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVAR 223 I T+ SRCL + ++ L+ +I+G + + + AA GS+ Sbjct: 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLD--RILGEEGIAHEPNALRLLASAAQGSMRD 221 Query: 224 AIKI----LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADE 261 A+ + + Y ++ + + ++ Q Y ++ + +ADE Sbjct: 222 ALSLTDQAIAYSAGEVTEAAVRGMLGAIDQSYLVRLLDALADE 264 >gi|16128454|ref|NP_415003.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. MG1655] gi|89107339|ref|AP_001119.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. W3110] gi|170080055|ref|YP_001729375.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. DH10B] gi|188492605|ref|ZP_02999875.1| DNA polymerase III, tau subunit [Escherichia coli 53638] gi|209917686|ref|YP_002291770.1| DNA polymerase III subunits gamma and tau [Escherichia coli SE11] gi|238899757|ref|YP_002925553.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli BW2952] gi|253774540|ref|YP_003037371.1| DNA polymerase III subunits gamma and tau [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160539|ref|YP_003043647.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str. REL606] gi|256023912|ref|ZP_05437777.1| DNA polymerase III subunits gamma and tau [Escherichia sp. 4_1_40B] gi|300818196|ref|ZP_07098407.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 107-1] gi|300947873|ref|ZP_07162023.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 116-1] gi|300958039|ref|ZP_07170203.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 175-1] gi|301647399|ref|ZP_07247209.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 146-1] gi|118808|sp|P06710|DPO3X_ECOLI RecName: Full=DNA polymerase III subunit tau; Contains: RecName: Full=DNA polymerase III subunit gamma gi|41291|emb|CAA27827.1| unnamed protein product [Escherichia coli] gi|43320|emb|CAA28174.1| dnaZX protein (AA 1-643) [Escherichia coli] gi|145297|gb|AAA23457.1| dnaX ORF [Escherichia coli] gi|1773152|gb|AAB40224.1| dna polymerase III subunits gamma and tau [Escherichia coli] gi|1786676|gb|AAC73572.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. MG1655] gi|85674609|dbj|BAE76249.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K12 substr. W3110] gi|169887890|gb|ACB01597.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. DH10B] gi|188487804|gb|EDU62907.1| DNA polymerase III, tau subunit [Escherichia coli 53638] gi|209910945|dbj|BAG76019.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE11] gi|238860837|gb|ACR62835.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli BW2952] gi|242376252|emb|CAQ30943.1| DNA polymerase III, tau subunit, subunit of DNA polymerase III, tau subunit dimer and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253325584|gb|ACT30186.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972440|gb|ACT38111.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str. REL606] gi|253976650|gb|ACT42320.1| DNA polymerase III subunits gamma and tau [Escherichia coli BL21(DE3)] gi|260450344|gb|ACX40766.1| DNA polymerase III, subunits gamma and tau [Escherichia coli DH1] gi|300315306|gb|EFJ65090.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 175-1] gi|300452551|gb|EFK16171.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 116-1] gi|300529087|gb|EFK50149.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 107-1] gi|301074454|gb|EFK89260.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 146-1] gi|309700730|emb|CBJ00026.1| DNA polymerase III subunits gamma and tau [Escherichia coli ETEC H10407] gi|315135151|dbj|BAJ42310.1| DNA polymerase III subunits gamma and tau [Escherichia coli DH1] gi|315616588|gb|EFU97205.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 3431] gi|323938656|gb|EGB34905.1| DNA polymerase III [Escherichia coli E1520] gi|323943275|gb|EGB39431.1| DNA polymerase III [Escherichia coli E482] gi|323963459|gb|EGB59021.1| DNA polymerase III [Escherichia coli H489] gi|324016730|gb|EGB85949.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 117-3] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|300987929|ref|ZP_07178445.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 45-1] gi|300407599|gb|EFJ91137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 45-1] Length = 449 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|198276945|ref|ZP_03209476.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] gi|198270470|gb|EDY94740.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] Length = 633 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G+GK T +A + N Sbjct: 31 RKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAYLFCGPRGVGKTTCARIFAKTI--NCL 88 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN + C F +Q S+ +H+ S + +V++IR + + Sbjct: 89 HPTSEGEACNECESCKAFNEQR-SYNIHELDAASNN------------SVEDIRSLIEQV 135 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPPQ +FIL + IL TI SRC Sbjct: 136 RIPPQIGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPQHAIFILATTEKHKILPTILSRCQ 195 Query: 183 SIKFNSLSENNLYKALEQL 201 F+ ++ N+ + LE + Sbjct: 196 IYDFSRITVNDTVEHLENV 214 >gi|71903770|ref|YP_280573.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS6180] gi|71802865|gb|AAX72218.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS6180] Length = 561 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 15/186 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC 75 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + + + +L D + + + N VDEIR IR + + ++ Sbjct: 76 --DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYK 120 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQK 180 Query: 193 NLYKAL 198 + + L Sbjct: 181 AIREHL 186 >gi|21674147|ref|NP_662212.1| DNA polymerase III, gamma/tau subunit [Chlorobium tepidum TLS] gi|21647307|gb|AAM72554.1| DNA polymerase III, gamma and tau subunits [Chlorobium tepidum TLS] Length = 620 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 25/250 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 +I R + P + E I + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 59 ---LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + +P + K +PC + DF SLN + +VD+I Sbjct: 65 QRMIDDPQYLKEVT-----EPCG------VCESCRDF-DAGASLNISEFDAASNNSVDDI 112 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R + G +RV +ID V ++ A NA LK+LEEPP +FI + I + Sbjct: 113 RLLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYD 231 TI SRC F + + + L Q+ G + D +++ A GS+ A IL Sbjct: 173 TIASRCQRFNFKRIPLDRIQGQLRQICDAEGITADADALQLIARKAQGSMRDAQSIL--- 229 Query: 232 CDKIISSYID 241 D++I+ ID Sbjct: 230 -DQVIAFAID 238 >gi|303257415|ref|ZP_07343428.1| DNA polymerase III, delta prime subunit [Burkholderiales bacterium 1_1_47] gi|331000634|ref|ZP_08324289.1| putative DNA polymerase III, delta' subunit [Parasutterella excrementihominis YIT 11859] gi|302859772|gb|EFL82850.1| DNA polymerase III, delta prime subunit [Burkholderiales bacterium 1_1_47] gi|329570906|gb|EGG52614.1| putative DNA polymerase III, delta' subunit [Parasutterella excrementihominis YIT 11859] Length = 347 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--------DPCSPFVKQ 83 ++ +L G +G G L R+A V+ AP +C P +V Sbjct: 22 KLPGGILIYGPRGCGVFELASRFAAAVVCQHPVDGAPCGICEECKLIFSGNHPDLRYVLS 81 Query: 84 MASHALHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 ALH + + PK I ++++R I +LS+TA+ R ++I P D M Sbjct: 82 ETEAALHPEPWNGKFGEIPKGKSLSKQILIEQVRGIGEYLSVTAHRAGHRAVVIYPADSM 141 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++ALLK+LEEPP+ + IL++ +IL TIRSRC Sbjct: 142 SGDQSSALLKTLEEPPEGAVLILVADDINSILPTIRSRC 180 >gi|226939891|ref|YP_002794964.1| DnaX [Laribacter hongkongensis HLHK9] gi|226714817|gb|ACO73955.1| DnaX [Laribacter hongkongensis HLHK9] Length = 769 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 15/181 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + LS R+HHA L G +G+GK T+ A + P C Sbjct: 18 LVGQEHVVRALSNALAGQRLHHAYLLTGTRGVGKTTIARILAKSLNCERGVGAEPCGECA 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +Q+ + D L + + N TG +D IR + G ++V Sbjct: 78 ------ACRQIDAGRFVDLLEIDAASN--TG-------IDNIREVIENAQYAPTAGRYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++++A NA+LK+LEEPP V FIL + + T+ SRCL +++ Sbjct: 123 YIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFALRNMTPQQ 182 Query: 194 L 194 + Sbjct: 183 V 183 >gi|223939210|ref|ZP_03631092.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] gi|223892163|gb|EEF58642.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] Length = 609 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G E + + LS S R+ HA LF G +G GK T+ +A + Sbjct: 5 VIARKYRPQRFSDVVGQEHVSQTLSNAIASNRIAHAYLFVGPRGTGKTTIARIFAKCL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P ++ PD P +++ D L + + N ++EIR +R Sbjct: 63 --NCTGGP-KVDFPDD-DPRCQEITEGRSLDVLEIDGASN---------RGIEEIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T +++ +ID V + + A NALLK+LEEPP V F+ + +L TI SR Sbjct: 110 TVKYAPATSKFKIYIIDEVHMLTKEAFNALLKTLEEPPAHVKFMFATTEPEKVLPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARAIKILHYDCDKIISS 238 C + + K L + SK + VKI A ++AR + D + + Sbjct: 170 CQRFDLRRIPSALITKHLAHI------SKLEKVKIDSGALDAIARGAEGGMRDAESTLDQ 223 Query: 239 YI 240 I Sbjct: 224 LI 225 >gi|194437483|ref|ZP_03069580.1| DNA polymerase III, tau subunit [Escherichia coli 101-1] gi|194423652|gb|EDX39642.1| DNA polymerase III, tau subunit [Escherichia coli 101-1] gi|323972324|gb|EGB67534.1| DNA polymerase III [Escherichia coli TA007] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|326576888|gb|EGE26794.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis O35E] Length = 748 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + AA GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSL 222 >gi|307708553|ref|ZP_07645018.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC 12261] gi|307615469|gb|EFN94677.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC 12261] Length = 551 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLAR 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ + L++ I + + A G + A+ IL Sbjct: 179 TQDIKEHIRYILDKENISSEPEAVEIIARRAEGGMRDALSIL 220 >gi|324990827|gb|EGC22762.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK353] Length = 556 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis DSM 16608] gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis DSM 16608] Length = 601 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTADGEACNECESCKAFSEGRS--------YNIFELDAASNN-----SVENIKSLMDQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N+ L+ + Sbjct: 174 IYDFERMTVPNIISHLKSV 192 >gi|225023623|ref|ZP_03712815.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC 23834] gi|224943505|gb|EEG24714.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC 23834] Length = 754 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALGKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + D L + + N TG +D IR + Sbjct: 65 ETPHEGEPCGQCQ------SCRDIDAGRFVDLLEIDAASN--TG-------IDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFVLRNMTAQQVSQHL 187 >gi|326570261|gb|EGE20306.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC8] Length = 748 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + AA GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSL 222 >gi|307826060|ref|ZP_07656273.1| DNA polymerase III, delta prime subunit [Methylobacter tundripaludum SV96] gi|307732899|gb|EFO03763.1| DNA polymerase III, delta prime subunit [Methylobacter tundripaludum SV96] Length = 337 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 13/174 (7%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA 67 V N+ L + + L Y R+ ALL G +G+GK L ++A +L P + Sbjct: 3 VPNRLLPWQQHQWEHLCSYIAQERIPQALLITGNKGLGKQQLANQFAVALLCATPQANGM 62 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 +C+ S + +H DF+ + P G I + +IR + L+L Sbjct: 63 ACGVCS----SCLLVNAETHP--DFIQVQPE-EPGKG-----IGIGQIRSLITRLTLKPQ 110 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV++++P D MN AANA LK LEEP ++ + ILI+ + +TI SRC Sbjct: 111 FETYRVVIVNPADKMNNAAANAFLKCLEEPTERTVIILITEKPAKLPATIISRC 164 >gi|146310611|ref|YP_001175685.1| DNA polymerase III subunits gamma and tau [Enterobacter sp. 638] gi|145317487|gb|ABP59634.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Enterobacter sp. 638] Length = 642 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + KI+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SS 238 +S Sbjct: 226 AS 227 >gi|323191136|gb|EFZ76400.1| DNA polymerase III, subunits gamma and tau [Escherichia coli RN587/1] Length = 643 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|119774447|ref|YP_927187.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119766947|gb|ABL99517.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 909 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++A D + + + K VD+ R I Sbjct: 65 EQGITATPCGQCS------ACREIAEGRFVDLIEVDAASRTK---------VDDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L++ + L Sbjct: 170 CLQFNLKALTQPQIQAQL 187 >gi|326566454|gb|EGE16604.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC1] Length = 748 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + AA GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSL 222 >gi|218961106|ref|YP_001740881.1| putative DNA polymerase III, delta prime subunit (holB-like) [Candidatus Cloacamonas acidaminovorans] gi|167729763|emb|CAO80675.1| putative DNA polymerase III, delta prime subunit (holB-like) [Candidatus Cloacamonas acidaminovorans] Length = 370 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 48/251 (19%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT--LGFRYAGHVLQNPDFSKAPVR 70 ++ G E+ + L + + R+ A LF G G+GK T L F A + L + P Sbjct: 4 KIKGQENALELLDKAIENDRIAQAYLFYGSDGVGKFTTALYFGMAVNCLATSELK--PCG 61 Query: 71 MCNPDPCSPFVKQMASHALHDFLYL------------------------SYSLNPKTGKW 106 C D C F++ H DF+YL +Y N W Sbjct: 62 EC--DACHKFLQ--LEHP--DFVYLFPTPNLNLSVEGEIKNTDAQKSYEAYLQNKINTPW 115 Query: 107 R-------TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 + T I + I + L L+ + +R+++I+ D MN ANA LK+LEEPP+ Sbjct: 116 KDFFFKDATEIRKESITLLNKRLELSIHEAKYRIVIIEDADMMNNATANAFLKTLEEPPE 175 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA-- 217 + + ILI+ P IL TI SR + F L+ +E++ I ++ + A+ Sbjct: 176 RTIIILITERLPLILPTILSRTQPVYFKPLTRG----VIEEILINEFEINSALARSASRI 231 Query: 218 -YGSVARAIKI 227 G++ AI+I Sbjct: 232 CAGNLKTAIRI 242 >gi|94988789|ref|YP_596890.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS9429] gi|94542297|gb|ABF32346.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS9429] Length = 561 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 15/186 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNQC 75 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + + + +L D + + + N VDEIR IR + + ++ Sbjct: 76 --DIC----RDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATYK 120 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQK 180 Query: 193 NLYKAL 198 + + L Sbjct: 181 AIREHL 186 >gi|293392503|ref|ZP_06636823.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582] gi|291424905|gb|EFE98114.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582] Length = 653 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 26/243 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLTLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +L + LE + ++ S ARA+++L D + + Sbjct: 170 CLQFHLKALDVEQIRNQLETV-----------LQAEQIASDARALQLLARAADGSMRDAL 218 Query: 241 DLI 243 L Sbjct: 219 SLT 221 >gi|262279434|ref|ZP_06057219.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] gi|262259785|gb|EEY78518.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] Length = 689 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|219871834|ref|YP_002476209.1| DNA polymerase III subunit delta' [Haemophilus parasuis SH0165] gi|219692038|gb|ACL33261.1| DNA polymerase III subunit delta [Haemophilus parasuis SH0165] Length = 329 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 13/183 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ ++ + GR HHALLF+ + G+G L +A +L + P C Sbjct: 7 HKQTHHQITSTFQQGRGHHALLFKTDSGLGTEQLIRHFAHWLLCHTPQQNQPCGQCK--- 63 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 S + Q +H DF + L P K I +D++R I L A G V+ + Sbjct: 64 -SCLLWQSGNHP--DF----HLLAPIDDK---DIGIDQVREITAKLQQFAQQGGNAVVYL 113 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 + + AANALLK+LEEP Q V F+L + T+L+TI+SRC + ++ + ++ Sbjct: 114 AGAERLTEAAANALLKTLEEPNQNVYFLLEAPLQATMLATIQSRCQTWLVHTPESSQTFE 173 Query: 197 ALE 199 L+ Sbjct: 174 WLQ 176 >gi|295397257|ref|ZP_06807353.1| DNA-directed DNA polymerase III subunit delta' [Aerococcus viridans ATCC 11563] gi|294974504|gb|EFG50235.1| DNA-directed DNA polymerase III subunit delta' [Aerococcus viridans ATCC 11563] Length = 337 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 15/186 (8%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPC 77 D+ + + + R+ HA +FEG G G+ + A ++ NP P CN Sbjct: 14 DLTAMMDRVLVNNRLGHAYIFEGMVGSGQEDMALYLAAYLNCLNPADKGIPCGTCN---- 69 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 +++ S D Y + P I +D+ R ++ LS+++ G ++ +I Sbjct: 70 --HCRRILSADYPDV----YHIEPDG----NTIKIDQTRDLKERLSMSSLEGDNQIFIIH 119 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 + M NAAN+LLK +EEP + V L+++ ILSTI SRC I F L++ +L Sbjct: 120 EAEKMTVNAANSLLKFIEEPHENVYIFLLTNNRDAILSTIVSRCQMIHFPQLNKVDLQVL 179 Query: 198 LEQLKI 203 E+ I Sbjct: 180 FEEAGI 185 >gi|269467848|gb|EEZ79591.1| DNA polymerase III, gamma/tau subunit [uncultured SUP05 cluster bacterium] Length = 528 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 25/235 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G K L + +HHA LF G +G+GK T+ +A + Sbjct: 7 VLARKYRPHTFSEMVGQTHTVKTLINALDADSLHHAFLFTGTRGVGKTTIARIFAKSINC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P ++ D + L + TG VD +R I Sbjct: 67 EAGVSSKPCGKC------PTCIEIDKGQSVDLIELDAA--SHTG-------VDNMRDILE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V +++++ NALLK+LEEPP+ + F+L + + T+ SR Sbjct: 112 NAQYMPTKNRYKIYLIDEVHMLSKSSFNALLKTLEEPPEHIKFLLATTDPQKLPVTVLSR 171 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-------AYGSVARAIKIL 228 CL L+ + L QLK + K + ++A YGS+ A+ +L Sbjct: 172 CLQFTLQKLTHEEI---LGQLKFIMEAEKLKYEELALSQIADFGYGSMRDALSLL 223 >gi|225850089|ref|YP_002730323.1| DNA polymerase III, subunits gamma and tau [Persephonella marina EX-H1] gi|225646125|gb|ACO04311.1| DNA polymerase III, subunits gamma and tau [Persephonella marina EX-H1] Length = 479 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ G E + K L R+ HA +F G +G+GK T+ +L Sbjct: 8 RKYRPKNFEQVIGQESVVKTLKNAIELERISHAYIFAGSRGLGKTTVS-----RILTK-- 60 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S + P PC ++ + D Y ++ + + +D+IR +R Sbjct: 61 -SLNCEKGVTPQPCGKCENCVEIEKGSFPDM----YEIDAASNRG-----IDDIRSLRDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID + R A NALLK+LEEPP +FIL + I TIRSRC Sbjct: 111 VNYAPIKGRYKVYIIDEAHMLTREAFNALLKTLEEPPPHNIFILATTELHKIPDTIRSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + F + + L + L + KI + D + A+ G + + +L Sbjct: 171 QTFIFRPPTSSQIKEYLKRILNEEKIEYEERALDLLAEASEGGIRDSASLL 221 >gi|194432687|ref|ZP_03064972.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012] gi|194418949|gb|EDX35033.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012] gi|332097008|gb|EGJ01992.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 155-74] Length = 643 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|308190298|ref|YP_003923229.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|307625040|gb|ADN69345.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] Length = 604 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 27/229 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V G + I + L + ++ HA LF G +G+GK ++ +A V N Sbjct: 13 KSFDDVK-----GQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVV--NCG 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + ++C + C A +F + G V+EIR +R + Sbjct: 66 HGEDLTKLC--ESC-------IEKADQNFDVIEMDAASNNG-------VNEIRDLRDKIQ 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 110 HSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRVQR 169 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S N + + L++ KI DS ++ A G + A+ I+ Sbjct: 170 YNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSIV 218 >gi|323490971|ref|ZP_08096165.1| DNA polymerase III subunit delta' [Planococcus donghaensis MPA1U2] gi|323395327|gb|EGA88179.1| DNA polymerase III subunit delta' [Planococcus donghaensis MPA1U2] Length = 330 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 16/180 (8%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L Y R+ HA LFEG G GK + + +L P C C Sbjct: 15 VMKRLQGAYGKERLAHAYLFEGPAGSGKKEITHFFVKLLLCESPIENVPCETCRN--C-- 70 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA-NTGYWRVIMIDP 138 Q+ + H + + P I +D+IR + + L+ T NTG ++ +I+ Sbjct: 71 ---QLYNSGNHTNVIF---IEPDGQN----IKIDQIRELIFKLNKTGLNTGR-KIYVIEQ 119 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D MN ++ANALLK LEEP V IL++ I+STIRSRC + F LS L + L Sbjct: 120 ADRMNNSSANALLKFLEEPEFNVTAILLTERLNAIMSTIRSRCQLVSFRPLSRPKLMEKL 179 >gi|85712669|ref|ZP_01043715.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] gi|85693519|gb|EAQ31471.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] Length = 640 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P+ ++ G + + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P +++ D + + + K R ++ + R R Sbjct: 65 ERGVSARPCGEC------PSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 118 --------GRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +L + LE Sbjct: 170 CLQFNLRALDREQIVGQLE 188 >gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CB0205] Length = 614 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L SGR+ A LF G +G GK T R L N S P Sbjct: 19 QLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGK-TSSARILARSL-NCLSSDHP---- 72 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P+PC +A+ D + + + N TG VD IR + Sbjct: 73 TPEPCGSCELCTSIANGNALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC + + Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQRFDYRRIP 183 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKI 215 ALEQ +GW +K + ++I Sbjct: 184 ----LDALEQH--LGWIAKEENIQI 202 >gi|262170996|ref|ZP_06038674.1| DNA polymerase III delta prime subunit [Vibrio mimicus MB-451] gi|261892072|gb|EEY38058.1| DNA polymerase III delta prime subunit [Vibrio mimicus MB-451] Length = 321 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L + +G+G +L Y L + P C+ S + Q +H D Sbjct: 23 KISAATLIQAPEGVGAESL-VEYMARTLMCTSSNSEPCGFCH----SCGLMQAGNHP--D 75 Query: 92 FLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 F + + P K GK ITV++IR I ++ +R+I+++P D MN +AANAL Sbjct: 76 F----HVVKPEKVGK---SITVEQIRHINRVAQESSQLSGYRLIVVEPADAMNESAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEP LFIL++ +L TI SRC Sbjct: 129 LKTLEEPAPDCLFILVTSRINHLLPTIVSRC 159 >gi|260551269|ref|ZP_05825471.1| DNA polymerase III [Acinetobacter sp. RUH2624] gi|260405726|gb|EEW99216.1| DNA polymerase III [Acinetobacter sp. RUH2624] Length = 703 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTATPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 532 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 25/242 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P + G + I L +GR+ HA LF G +G GK ++ A V ++P Sbjct: 8 RKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNCEHP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + NP +++ + + + + + N VD IR I+ + Sbjct: 68 EDG-------NPCGVCESCREIQEGSSMNVMEIDAASNN---------GVDNIRDIKEQV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 112 QYSPASGKYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ 171 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F+ ++ + L + + + + + +V A GS+ A+ +L D+ I+ Sbjct: 172 RYDFHRITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLL----DQCIAF 227 Query: 239 YI 240 Y+ Sbjct: 228 YL 229 >gi|312882453|ref|ZP_07742194.1| DNA polymerase III subunit delta' [Vibrio caribbenthicus ATCC BAA-2122] gi|309369853|gb|EFP97364.1| DNA polymerase III subunit delta' [Vibrio caribbenthicus ATCC BAA-2122] Length = 320 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R +A+L E G G L + VL + S+ C+ + M S++ Sbjct: 21 SSRFPNAVLLETAAGFGSEALVSALSRAVLCQNNLSEG-CGFCHS------CQLMESNSH 73 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR+ ++ G R+ +I+P + MN AAN Sbjct: 74 PDF----HCVQPEKEGK---TITVEQIRQCTRVAYESSQLGGLRLFVIEPAEFMNEPAAN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ALLK+LEEPP++ +F+L++ T++ TI SRC + + + LEQ Sbjct: 127 ALLKTLEEPPERCIFLLVTDRVSTLMPTIISRCQKWRVPQPDYQEVIQWLEQ 178 >gi|284040920|ref|YP_003390850.1| DNA polymerase III gamma/tau subunits-like protein [Spirosoma linguale DSM 74] gi|283820213|gb|ADB42051.1| DNA polymerase III gamma/tau subunits-like protein [Spirosoma linguale DSM 74] Length = 371 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 27/245 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF---RYAGHVLQNPDFSKAPVR 70 + G ++ ++FL Q + HALLF+G G L +Y + PD + Sbjct: 6 IIGLDETKQFLLQAVQRNHLAHALLFDGPTGSANLALALALAQYVNCEDKQPDDACGRCA 65 Query: 71 MC-------NPD-----PCSPFVKQMASHA-LHDF--LYLSYSLNPKTGKWRTV------ 109 C +PD P + K S A L D+ L+ +G T+ Sbjct: 66 SCIKIQKLVHPDLHMVFPVANLSKGKTSEAYLADWRKFLLATPYRTLSGWLETMGADNKQ 125 Query: 110 --ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I+ +E R I LSL + G +++++I + MN +ANALLK LEEPP + LF+L++ Sbjct: 126 GNISAEEARNILQKLSLKSYEGAYKIMIIWLPELMNVTSANALLKVLEEPPAQTLFLLVT 185 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + S +L TI SR + + ++ + L Q + + + R F +A G++A A+++ Sbjct: 186 NQSDKLLITILSRTQRVAIRAFTDEEVATYLRQQQNLDETTARRFAYLAD-GNLAEALQL 244 Query: 228 LHYDC 232 D Sbjct: 245 SQQDT 249 >gi|87122704|ref|ZP_01078579.1| DNA polymerase III subunit delta [Marinomonas sp. MED121] gi|86162001|gb|EAQ63291.1| DNA polymerase III subunit delta [Marinomonas sp. MED121] Length = 322 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 37/252 (14%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HALL G+ G G+ L + A +L + + C+ S + +H D+ Sbjct: 29 LSHALLLMGKDGGGQHLLATQIAYDILCDQKQLNSACGECH----SCRLNHAGTHP--DY 82 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + L+ + G I VD+IR+I ++ + + +V+++ MN NAANA+LK Sbjct: 83 ----HLLDGQEG----TIKVDQIRQIITKVATSPQVSHAKVVILAQAASMNINAANAVLK 134 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI------MGW 206 +LEEPP FIL + AS +++T+RSRCL I S + + L + + W Sbjct: 135 ALEEPPSGTYFILTADASSQLIATVRSRCLLINLPEPSSAQIEEWFSGLDLEDDVADIQW 194 Query: 207 DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ- 265 +K+ F Y +L+ D + I Y+ + + AD +LS+ Sbjct: 195 VTKQPFT---LYQLAKSGRSLLYKDVPENIDKYL-------------QGEMSADLVLSKL 238 Query: 266 DQKIAFDFLIEF 277 D K + DFL + Sbjct: 239 DSKNSADFLFAY 250 >gi|330445437|ref|ZP_08309089.1| DNA polymerase III, subunits gamma and tau [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489628|dbj|GAA03586.1| DNA polymerase III, subunits gamma and tau [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 719 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 35/323 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKCA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL L + EQL + + K ++ + A G +ARA + S Sbjct: 170 CLQFHLKHLDHQQIQ---EQLAKVLTEEKVEY-EAKALGLLARAAE----------GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D + + Q AL Q AD + + + D + F+L+ + KS A+ L++ Sbjct: 216 DALSLTDQAIALGNGQVGADNVAAMLGTLNTDQAL-FLLEAVAKSDANIAMDT-LQQLAN 273 Query: 301 IAQIYFSLVK----RVHAFSMYN 319 + + SL++ ++H +MY Sbjct: 274 VGVEWDSLLRELASQLHRVAMYQ 296 >gi|296113237|ref|YP_003627175.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis RH4] gi|295920931|gb|ADG61282.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis RH4] Length = 748 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + AA GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSL 222 >gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361] gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361] Length = 602 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G E + L ++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMTFSAVVGQEALTTTLKNAVKGDKLAHAYLFCGPRGVGKTTCARIFAKTI--NCE 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A CN CS +++ F + S N +V+ I+ + Sbjct: 67 HPSADGEACNE--CSSCKSFNEGRSMNIFELDAASNN----------SVENIKTLMEQTQ 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + TG ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 115 IPPQTGRYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRC 172 >gi|113868363|ref|YP_726852.1| DNA polymerase III subunits gamma and tau [Ralstonia eutropha H16] gi|113527139|emb|CAJ93484.1| DNA polymerase III tau/gamma subunit [Ralstonia eutropha H16] Length = 784 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 22/235 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL R L Sbjct: 29 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLS-RILAKALN 87 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD + PC +++ S D++ + + N VDE+ Sbjct: 88 CTGPDGNGG----ITAQPCGQCKACQEIDSGRFVDYIEMDAASN---------RGVDEMA 134 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ +G ++V MID V + +A NA+LK+LEEPP V FIL + I T Sbjct: 135 QLLDKAVYAPTSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVT 194 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 + SRCL + ++ L+ + + +G D + AA+GS+ A+ + Sbjct: 195 VLSRCLQFNLKQMPPGHIVSHLDHILAQEGIGHDGNALRLLAQAAHGSMRDALSL 249 >gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. AS9601] gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. AS9601] Length = 584 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G + I L Q + ++ A LF G +G GK T R L F + + C Sbjct: 19 ELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGK-TSSARIFAKSLNCQAFDQPTITPC 77 Query: 73 NPDPCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C +Q+ + D + + + N TG V+ IR I W Sbjct: 78 ----CKCDLCRQITEGSALDIIEIDAASN--TG-------VENIREIIERARFAPTQARW 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC F +S Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQKFDFRRISP 184 Query: 192 NNLYKALEQL 201 +++++ L ++ Sbjct: 185 SDIFQHLSEI 194 >gi|300770797|ref|ZP_07080675.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium spiritivorum ATCC 33861] gi|300762354|gb|EFK59172.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium spiritivorum ATCC 33861] Length = 596 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G + I L + ++ A LF G +G+GK T A + N + Sbjct: 9 RKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKTI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + V C D C F + S ++H+ S + +VD+IR + + Sbjct: 67 HITSEVEACGVCDSCKSF-QNGNSFSIHELDAASNN------------SVDDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQSGKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKAL 198 FN + ++ + L Sbjct: 174 IFDFNRIRVEDMARHL 189 >gi|322372837|ref|ZP_08047373.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150] gi|321277879|gb|EFX54948.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150] Length = 552 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 19/220 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + I L Q SG++ HA LF G +G GK + +A + P C Sbjct: 16 EMVGQKVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHC 75 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C + + + +L D + + + N VDEIR IR + + ++ Sbjct: 76 --DIC----RDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRATYK 120 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQA 180 Query: 193 NLYKALEQ-LKIMGW---DSKRDFVKIAAYGSVARAIKIL 228 + + L LK G D + A G + A+ IL Sbjct: 181 AIKEHLASILKKEGMTFDDEALTIIARRAEGGMRDALSIL 220 >gi|289164822|ref|YP_003454960.1| DNA polymerase III, delta' subunit [Legionella longbeachae NSW150] gi|288857995|emb|CBJ11855.1| putative DNA polymerase III, delta' subunit [Legionella longbeachae NSW150] Length = 304 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 24/176 (13%) Query: 21 EKFLSQY------YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 EK+L+Q+ + +GRM A+LF G R++ V F K + Sbjct: 9 EKYLAQWKQIQIAWKNGRMPQAMLFVGSLDCALIDFIRRFSKFV-----FCKMETK---- 59 Query: 75 DPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 PC + +MA A H D ++ K K I +D IR + + LT R Sbjct: 60 -PCGECIDCRMALCAEHPDLNWI------KPEKRGGSIKIDTIRELHDYSYLTPQRANHR 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +I+I+ V+ MN +AAN+LLK LEEP Q +LF+L++ T+L TI SRC + F S Sbjct: 113 LIVIESVERMNISAANSLLKILEEPAQHILFLLVAQQLSTVLPTILSRCQIMHFAS 168 >gi|224475617|ref|YP_002633223.1| putative DNA polymerase III, delta' subunit [Staphylococcus carnosus subsp. carnosus TM300] gi|222420224|emb|CAL27038.1| putative DNA polymerase III, delta' subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 308 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 24/181 (13%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVK 82 L+ Y SG++ HA LFEG+ G +Q + A + +CN + C V Sbjct: 7 LTNAYQSGKLSHAYLFEGDDG------------QTMQQTAMAFAKLILCNDNEICQAKVD 54 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 ++ +H DF Y+S + I ++I + + ++ G +V +ID + + Sbjct: 55 EL-NHP--DFRYVSTE--------ESNIKKEKIEALVHAMNQLPVEGTHKVYIIDGFEKL 103 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 N++LK LEEPP+ + IL+S ILSTI SRC + F +S+ L + LE+ Sbjct: 104 TVQGENSILKFLEEPPENTIAILLSTKPEQILSTIHSRCQHVYFRPMSQEKLIERLEEQD 163 Query: 203 I 203 I Sbjct: 164 I 164 >gi|206900548|ref|YP_002250505.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] gi|206739651|gb|ACI18709.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] Length = 326 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 20/215 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G + + L + ++ LF G +G+GK + +Q + P+ Sbjct: 4 KEIVGQKQAIEVLRRAINENKLSQTYLFVGPEGVGKRLTAISF----VQALNCKVEPLEG 59 Query: 72 CNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C K + + D YL G+W + + +IR+ Y +N Sbjct: 60 CGECDIC----KSIEKLSYPDLFYLK-----PEGQWYKIQQIRDIRKEAYVKPYISN--- 107 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D + ANALLK LEEPP+ LFILI++ +L TI SR I F+ LS Sbjct: 108 WKVFILDDAHQLRAEGANALLKILEEPPEHTLFILIAYRPELLLPTIISRSQIISFSYLS 167 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 + +++ ++ K+ + K + + + GSV +A+ Sbjct: 168 YDEVWQIIKD-KVS--EDKLEILVNLSQGSVGKAL 199 >gi|260554689|ref|ZP_05826910.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] gi|260411231|gb|EEX04528.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] Length = 702 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|332098642|gb|EGJ03608.1| DNA polymerase III, subunits gamma and tau [Shigella boydii 3594-74] Length = 463 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|330817182|ref|YP_004360887.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli BSR3] gi|327369575|gb|AEA60931.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli BSR3] Length = 813 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGITSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVMHLE--RILG 192 >gi|299542068|ref|ZP_07052384.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis ZC1] gi|298725383|gb|EFI66031.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis ZC1] Length = 595 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 18/204 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + Sbjct: 8 RVYRPQSFREMSGQTHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHA 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 SK P C C SH D + + N + V+EIR I + Sbjct: 68 PSKEPCNECAT--CISITD--GSHP--DVIEFDAASNSR---------VEEIRDIIEKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK+LEEPP +FIL + + +TI SRC Sbjct: 113 FAPASSRYKVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMGWD 207 F LS N++ +E++K++ D Sbjct: 173 FDFKRLSTNDI---IERMKVVLED 193 >gi|294859646|ref|ZP_06797415.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6013150] Length = 682 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|229825861|ref|ZP_04451930.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC 49176] gi|229789881|gb|EEP25995.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC 49176] Length = 522 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + G + + L ++ HA +F G +G GK ++ +A V Sbjct: 8 RKFRPKGFDEVKGQDSVVTVLKNQIKHEKIGHAYMFSGTRGTGKTSVAKIFAKAVNCENT 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P +C + C K++ D + + + N R VI ++Y + Sbjct: 68 KDGSPCGVC--ETC----KKIGEGRTLDVIEIDAATNNGVDNMREVI-----EEVKYSPT 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T ++V +ID V ++ A NALLK+LEEPP+ +FIL + +L TI+SRC Sbjct: 117 DTK----YKVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQK 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S + L++L Sbjct: 173 YDFRRISIETISDRLKEL 190 >gi|215483116|ref|YP_002325323.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii AB307-0294] gi|213988763|gb|ACJ59062.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii AB307-0294] Length = 700 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|213158428|ref|YP_002319726.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057] gi|213057588|gb|ACJ42490.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057] Length = 686 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|169795628|ref|YP_001713421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii AYE] gi|169148555|emb|CAM86421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii AYE] Length = 710 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|325122590|gb|ADY82113.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter calcoaceticus PHEA-2] Length = 685 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|323340136|ref|ZP_08080400.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus ruminis ATCC 25644] gi|323092327|gb|EFZ34935.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus ruminis ATCC 25644] Length = 330 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 14/174 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ HA LF G G GK+ L A V + P C+ +++A H Sbjct: 22 AGKLSHAYLFAGPAGTGKSELALFVAQIVFCTDKQAGMPCGRCSE------CRRIADHGF 75 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + ++ P I VD+IR ++ S + G ++ +I + M +AAN+ Sbjct: 76 PDVVEVA----PDGAS----IKVDQIRFLKAEFSKSGVEGTKKIFIISDAEKMTASAANS 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 LLK LEEP V L++ + IL TI SRC + +L + L + L+Q I Sbjct: 128 LLKFLEEPSGDVCAFLLTENANLILPTIISRCQEFELQALGFDELSEKLQQAGI 181 >gi|254456249|ref|ZP_05069678.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083251|gb|EDZ60677.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 556 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 20/220 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + ++ + ++ +A LF G +GIGK T A V + + SK +C Sbjct: 20 LIGQEVVAETITNSIKADKIPNAYLFTGIRGIGKTT----TARIVAKGLNCSKGIENLCK 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C K +A + D L + + KTG VD++R + F + +++ Sbjct: 76 KDLCEN-CKSIADASHIDVLEMDAA--SKTG-------VDDVRDLIEFSRYGPTSAKYKI 125 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V +++ A NALLK+LEEPP + FI + I T+ SRC + + Sbjct: 126 FIIDEVHMLSKQAFNALLKTLEEPPAYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSTE 185 Query: 194 LYKALEQLKIMGWDSKRD-----FVKIAAYGSVARAIKIL 228 L++ ++++K + D VKI+ GSV A+ +L Sbjct: 186 LFEFIKKIKDKENGNVSDEALKLIVKISE-GSVRDALSLL 224 >gi|90407634|ref|ZP_01215814.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3] gi|90311225|gb|EAS39330.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3] Length = 784 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + LS R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPHNFSEVIGQEHVLTALSNGLTQNRVHHAYLFSGTRGVGKTSIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C F + + D L + + K VD+ R + Sbjct: 65 EQGVTATPCGQCE------FCLAIDAGHFVDLLEIDAASRTK---------VDDTREMLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPTVGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L + K L Sbjct: 170 CLQFHLKALLPEQIEKQL 187 >gi|15603539|ref|NP_246613.1| DNA polymerase III subunit delta' [Pasteurella multocida subsp. multocida str. Pm70] gi|12722081|gb|AAK03758.1| HolB [Pasteurella multocida subsp. multocida str. Pm70] Length = 327 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 25/224 (11%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P Y QR+ + G HHALLF+ EQG+G L F GH L Sbjct: 10 PYYQQRIDA-----------FQQGHGHHALLFQAEQGLGTEQLLFAL-GHWLICQQPQNQ 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 C F Q +H D Y+L P K I VD++R + ++ A Sbjct: 58 QPCQQCHH-CHLF--QAQTHP--DI----YTLTPIENK---DIGVDQVREVNEKINQHAQ 105 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++I + V + AANA+LK+LEEP F+L + AS +++ TI SRC + K Sbjct: 106 QGGNKIIYVLGVSRLTEAAANAMLKTLEEPRPNTYFLLYTEASDSVMPTIYSRCQTQKLA 165 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 +E + L+Q + + ++I +YG A+ +L D Sbjct: 166 LPAETSAIAWLQQQTTQEIAAIQTALRI-SYGRPLHALTVLQQD 208 >gi|323518491|gb|ADX92872.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii TCDC-AB0715] Length = 692 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|322507665|gb|ADX03119.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii 1656-2] Length = 710 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|270263611|ref|ZP_06191880.1| DNA polymerase III subunits gamma and tau [Serratia odorifera 4Rx13] gi|270042495|gb|EFA15590.1| DNA polymerase III subunits gamma and tau [Serratia odorifera 4Rx13] Length = 649 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +L + + LE Sbjct: 170 CLQFHLKALDVDQIRNQLE 188 >gi|256004043|ref|ZP_05429028.1| DNA-directed DNA polymerase [Clostridium thermocellum DSM 2360] gi|255991966|gb|EEU02063.1| DNA-directed DNA polymerase [Clostridium thermocellum DSM 2360] Length = 317 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L ++ + R+ HA +F G +GIGK+T+ +A + MC+ Sbjct: 4 LKRFIDNNRIGHAYIFSGPEGIGKSTVAKIFA------------SILMCDDAAVDKSCGN 51 Query: 84 MASHALHDFLYLSYSLNPKTGKWRT---VITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 S L + NP G T I VDEIR ++ + + +V +I + Sbjct: 52 CRSCRLFE-----NRTNPDFGVLETRGLSIGVDEIRNLQQDICIRPLYSKRKVYLIREAE 106 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M A N LLK+LEEPP+ + IL + ++L TIRSR + I F N + +++ Sbjct: 107 KMTVQAQNCLLKTLEEPPEYAVIILATSNYESLLETIRSRSVRINF----AKNTFDEVKR 162 Query: 201 LKI--MGWD-SKRDFVKIAAYGSVARAIKILH 229 + G D + DF+ A G + RA++++ Sbjct: 163 FIVSRAGGDFEQADFIAAYADGVIGRAVELME 194 >gi|184158568|ref|YP_001846907.1| DNA polymerase III subunit gamma/tau [Acinetobacter baumannii ACICU] gi|294841838|ref|ZP_06786521.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6014059] gi|183210162|gb|ACC57560.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii ACICU] Length = 680 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|163801914|ref|ZP_02195811.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4] gi|159174422|gb|EDP59226.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4] Length = 730 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPSKFDQVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ D L + + K V++ R + + Sbjct: 68 ITANPCGKC--DTC----REIDEGRFVDLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL 201 +S + +++ L+ + Sbjct: 173 FHLKPISVDVIHQQLDHI 190 >gi|322388028|ref|ZP_08061634.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis ATCC 700779] gi|321141049|gb|EFX36548.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis ATCC 700779] Length = 554 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIRDIRDKSTYAPSIAQ 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ + Q L+ G D + + V+I A G + A+ IL Sbjct: 179 TQDIRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSIL 220 >gi|269139438|ref|YP_003296139.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202] gi|267985099|gb|ACY84928.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202] gi|304559334|gb|ADM41998.1| DNA polymerase III delta prime subunit [Edwardsiella tarda FL6-60] Length = 328 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 15/202 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 + L+Q+ GR HHALL G+G+ +L + A +L Q P K+ C+ Sbjct: 13 QLLAQHQ-EGRGHHALLLHAIDGMGEESLVYALARWLLCQRPQGEKS-CGECH------A 64 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + M + D+ + L P+ GK + + ++ +R++ L A G +++ I + Sbjct: 65 CRLMMAGTHPDW----HVLQPEKGK--STLGIEPVRQVIEQLQNHAQQGGAKLVWIARCE 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++ AANALLK+LEEPP + F+L + +L T+RSRC + +E+ + L Q Sbjct: 119 QLSEAAANALLKTLEEPPAQTYFLLGTREPAQLLPTLRSRCFYLYLAPPAEDASLRWLAQ 178 Query: 201 LKIMGWDSKRDFVKIAAYGSVA 222 ++R ++++A VA Sbjct: 179 QMPGDAQAQRSALRLSAGAPVA 200 >gi|238893440|ref|YP_002918174.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae NTUH-K2044] gi|238545756|dbj|BAH62107.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 635 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|152969025|ref|YP_001334134.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953874|gb|ABR75904.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 635 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|331666829|ref|ZP_08367703.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271] gi|331066053|gb|EGI37937.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271] Length = 483 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|307137113|ref|ZP_07496469.1| DNA polymerase III subunits gamma and tau [Escherichia coli H736] gi|331640993|ref|ZP_08342128.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736] gi|331037791|gb|EGI10011.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736] Length = 483 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|329736044|gb|EGG72317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU045] Length = 568 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTYVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + +D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNNDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKIL 228 R F ++S + + +++LK + D+ +F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAISSDQI---IDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM 221 >gi|223043407|ref|ZP_03613453.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14] gi|222443196|gb|EEE49295.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14] Length = 568 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 R F ++S N + L+ + + + +D+ +F+ + G + A+ I+ Sbjct: 169 RAQRFDFKAISMNQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIM 221 >gi|330002982|ref|ZP_08304507.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3] gi|328537093|gb|EGF63372.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3] Length = 635 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|269138376|ref|YP_003295076.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda EIB202] gi|267984036|gb|ACY83865.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda EIB202] gi|304558406|gb|ADM41070.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda FL6-60] Length = 689 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 42 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 101 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D L + + K V++ R + Sbjct: 102 ETGITATPCGVC--DNC----REIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 146 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 147 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 206 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 207 CLQFHLRALDHEQIRAQLEKI 227 >gi|260440445|ref|ZP_05794261.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae DGI2] Length = 707 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + +C Q+ + D L + + N TG +D IR + Sbjct: 65 ENAQHGE----LCG---VCQSCTQIDAGRYVDLLEIDAASN--TG-------IDNIREVL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 221 >gi|215485550|ref|YP_002327981.1| DNA polymerase III subunits gamma and tau [Escherichia coli O127:H6 str. E2348/69] gi|312964465|ref|ZP_07778759.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 2362-75] gi|215263622|emb|CAS07953.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O127:H6 str. E2348/69] gi|312290942|gb|EFR18818.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 2362-75] Length = 643 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|24111853|ref|NP_706363.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a str. 301] gi|30061970|ref|NP_836141.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a str. 2457T] gi|110804497|ref|YP_688017.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 5 str. 8401] gi|24050648|gb|AAN42070.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Shigella flexneri 2a str. 301] gi|30040214|gb|AAP15947.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Shigella flexneri 2a str. 2457T] gi|110614045|gb|ABF02712.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri 5 str. 8401] gi|281599809|gb|ADA72793.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri 2002017] gi|313646900|gb|EFS11357.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri 2a str. 2457T] Length = 641 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|290580054|ref|YP_003484446.1| DNA polymerase III subunit gamma/tau [Streptococcus mutans NN2025] gi|254996953|dbj|BAH87554.1| DNA polymerase III gamma/tau subunit [Streptococcus mutans NN2025] Length = 558 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + K L Q S ++ HA LF G +G GK + +A + P Sbjct: 16 EMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCP-------HQA 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCDICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|71894079|ref|YP_278187.1| DNA polymerase III subunits gamma and tau [Mycoplasma synoviae 53] gi|71850867|gb|AAZ43476.1| DNA polymerase III gamma and tau subunit [Mycoplasma synoviae 53] Length = 609 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L S ++ HA LF G +G GK + +A + N Sbjct: 8 RKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAKAL--NCS 65 Query: 64 FSKAPVRMCN--PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ ++C P+ S + +M + + TG VDEIR ++ Sbjct: 66 HSEVRSQICESCPNQNSGDIIEMDAAS-------------NTG-------VDEIRNLKEN 105 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID V ++++A NALLK+LEEPP V+FIL + + TI SR Sbjct: 106 VDQLPFESKYKIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRV 165 Query: 182 LSIKFNSLSENNLYKALEQL 201 S F +SE + LE + Sbjct: 166 QSFNFRRISEKQIVAQLENI 185 >gi|146296344|ref|YP_001180115.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409920|gb|ABP66924.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 535 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 25/233 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + E I K L ++ HA +F G +G GK T A V NP Sbjct: 7 RKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAVNCLNP 66 Query: 63 DFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +PC+ + + + D L + + N +V+++R+IR Sbjct: 67 K---------DGNPCNECEVCQSILNEKTLDVLEIDAASN---------TSVNDVRQIRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + RV +ID V ++ A NALLK+LEEPP LFIL + + +TI SR Sbjct: 109 EVRYPPSMCKRRVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 C F +S ++Y+ L+++ KI D + A G++ A+ IL Sbjct: 169 CQRFDFKRISVKDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILE 221 >gi|291043744|ref|ZP_06569460.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2] gi|291012207|gb|EFE04196.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2] Length = 736 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +N + +C Q+ + D L + + N TG +D IR + Sbjct: 94 ENAQHGE----LCG---VCQSCTQIDAGRYVDLLEIDAASN--TG-------IDNIREVL 137 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ S Sbjct: 138 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 197 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +++ ++L L+ KI + AA GS+ A+ +L Sbjct: 198 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLL 250 >gi|257455034|ref|ZP_05620278.1| DNA-directed DNA polymerase [Enhydrobacter aerosaccus SK60] gi|257447547|gb|EEV22546.1| DNA-directed DNA polymerase [Enhydrobacter aerosaccus SK60] Length = 387 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 62/231 (26%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL---------------------------QNPDFS 65 + HA+LF G G GK +R+ L +PD Sbjct: 64 LPHAMLFAGNAGTGKRAFVYRFVAWALCENQRDNVQGVATACGQCQSCQWLIANTHPDLY 123 Query: 66 KAPV----RMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P R +P P + V Q +H SYS I +DEIR ++ Sbjct: 124 QIPTPTVARDASPKPKVNNALVAQAPTHQS------SYS-----------IKIDEIRELQ 166 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F+ T ++G R+++I D M A+NALLK+LEEP + VL +LIS + +L TIRS Sbjct: 167 PFV--TQSSGGLRIVVIHQADAMTLAASNALLKTLEEPAENVLMLLISDSPSQLLPTIRS 224 Query: 180 RCLSIKFNSLSENNLYKALEQL----------KIMGWDSKRDFVKIAAYGS 220 R + + ++ + ++QL ++ GW F+ + S Sbjct: 225 RLQAFSVSHVTPAQSMQVMQQLMPNTDAVTLQQVNGWSGYAPFLALQMLNS 275 >gi|239501566|ref|ZP_04660876.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB900] Length = 698 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|187733496|ref|YP_001879179.1| DNA polymerase III subunits gamma and tau [Shigella boydii CDC 3083-94] gi|187430488|gb|ACD09762.1| DNA polymerase III, tau subunit [Shigella boydii CDC 3083-94] Length = 643 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|260886039|ref|ZP_05736389.2| putative DNA polymerase III, delta prime subunit [Prevotella tannerae ATCC 51259] gi|260850503|gb|EEX70372.1| putative DNA polymerase III, delta prime subunit [Prevotella tannerae ATCC 51259] Length = 409 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 38/250 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I+ L + GR+ HA LF G G+GK + A +L ++ P + Sbjct: 42 VIGQAAIKARLRRQVVEGRVPHAQLFCGPTGVGKLPMALALASSLLCT---NRTP--EGD 96 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGK-----------------------WRTVI 110 P C K +A +A D ++ ++ + W + Sbjct: 97 PCGCCAGCKMVARYAHPDLHFIFPTIRKGSTSSSDTYLEAWRERLLTSPYFDNQDWLAAL 156 Query: 111 TVDEIRRIRYF---------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 V+ + Y LSL AN G ++V+++ D M+ N LLK LEEPPQ Sbjct: 157 QVENQQPTFYVADSNAVIEKLSLVANQGGYKVMIVWQADKMSVEVQNKLLKILEEPPQLT 216 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +FIL++ A +L TI SR I F L E L + L + + RD I + GS Sbjct: 217 VFILLTDAPERLLPTIASRVQRIDFPLLPERLLQEELSTRNHIDPTAARDIAHI-SNGSY 275 Query: 222 ARAIKILHYD 231 +A++ + D Sbjct: 276 VQALRHIGVD 285 >gi|296116792|ref|ZP_06835398.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter hansenii ATCC 23769] gi|295976593|gb|EFG83365.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter hansenii ATCC 23769] Length = 690 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 14/193 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G + + L + GR+ HA + G +G+GK T R L Sbjct: 53 RKYRPTTFDDLIGQDTTVRILRNAFALGRVAHAFMLTGVRGVGKTTTA-RIIARALNCTG 111 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD P DPC +A A + +TG VD++R I Sbjct: 112 PDGQGGPTA----DPCGVCPNCVAILADRHPDVMEMDAASRTG-------VDDVREIIDS 160 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ SRC Sbjct: 161 TRFRPIQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPSQVTFIFATTELRKVPVTVLSRC 220 Query: 182 LSIKFNSLSENNL 194 + + ++ L Sbjct: 221 QTFDLRRVPQDML 233 >gi|78189734|ref|YP_380072.1| DNA polymerase III, delta subunit, putative [Chlorobium chlorochromatii CaD3] gi|78171933|gb|ABB29029.1| DNA polymerase III, delta subunit, putative [Chlorobium chlorochromatii CaD3] Length = 391 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 36/250 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP-VRMC 72 + G + + L +GR HA LF G +G GK + F A +L + S +P V C Sbjct: 6 IIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAA-LLNCRNASASPQVGAC 64 Query: 73 N--PD---------PCSPFVKQMASHALHDFLYLSYSLNPK--TGKWRTVITVDEIRRIR 119 N PD P ++ + + L L+ N + K R ++ + Sbjct: 65 NTCPDCEKVHALNHPNVEYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERKKENP 124 Query: 120 YF---------------LSLT------ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 YF LSL + G ++ +I + ++ +AAN LLK LEEPP Sbjct: 125 YFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIFIISQAERLHPSAANKLLKLLEEPP 184 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 + VLFILIS +L TIRSRC ++KF+ ++ L + L Q + + +R FV + Sbjct: 185 EHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVVNFSR 244 Query: 219 GSVARAIKIL 228 G++ A +L Sbjct: 245 GNLRLAWDLL 254 >gi|120601240|ref|YP_965640.1| subunits gamma and tau [Desulfovibrio vulgaris DP4] gi|120561469|gb|ABM27213.1| DNA polymerase III, tau subunit [Desulfovibrio vulgaris DP4] Length = 622 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E ++ LS+ R+ A LF G +G+GK T+ +A + + + Sbjct: 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL----NCA 65 Query: 66 KAPVRMCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 AP +PC+ + + + +H D + + + N +D+ +R++ + Sbjct: 66 TAPTG----EPCNTCEQCRKVTQGMHVDVVEIDGASN---------RGIDDAKRLKEAIG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + R A NALLK+LEEPP +V F+L + TI SRC Sbjct: 113 YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQH 172 Query: 184 IKFNSLSENNLYKALEQLKIMG 205 F LSE L L K++G Sbjct: 173 FTFTRLSEAGLEAHL--TKVLG 192 >gi|118442938|ref|YP_879225.1| DNA polymerase III subunit delta' [Clostridium novyi NT] gi|118133394|gb|ABK60438.1| DNA polymerase III, delta subunit, putative [Clostridium novyi NT] Length = 314 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 78/183 (42%), Gaps = 28/183 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE I+K + +G+ HA L GE GIGK+ L A VL Sbjct: 4 ESIIGHELIKKEIENSIDTGKFSHAHLIVGEDGIGKSLLAREIALKVL------------ 51 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D +V + K K + I VD IR I ++ G Sbjct: 52 -GKDEDRDYVD---------------IIKWKIEKNKQSIGVDSIRDIIKEVNKKPYEGDK 95 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ + M A NA LK++EEPP VL IL+S +L TIRSRC K LS Sbjct: 96 KVVIVYNAEKMTTEAQNAFLKTIEEPPNGVLIILLSQNLEMMLETIRSRCQIHKLKRLSS 155 Query: 192 NNL 194 + Sbjct: 156 KEM 158 >gi|324010051|gb|EGB79270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 57-2] Length = 643 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|24379964|ref|NP_721919.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans UA159] gi|24377948|gb|AAN59225.1|AE014989_6 DNA polymerase III, gamma/tau subunit [Streptococcus mutans UA159] Length = 558 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + K L Q S ++ HA LF G +G GK + +A + P Sbjct: 16 EMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCP-------HQA 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNNCDICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|262199636|ref|YP_003270845.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] gi|262082983|gb|ACY18952.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] Length = 298 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 17/208 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G E + L + R+ HA L G G+GK T + + AP + C Sbjct: 20 GQERVVARLRRALEQNRVAHAYLLSGPAGVGKLTTAVALTAAI----ECIDAPGQGCGT- 74 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVI 134 CS K A ++ L + G + +I ++ IR ++ L++ + G RV Sbjct: 75 -CSACSKIAAG------IHPDVQLLERQGAAQ-IIPIETIRTQVIPRLAMPPHEGAARVF 126 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN-- 192 +ID + + +ANALLK+LEEPP + F L + A +L TIRSRC + F LS Sbjct: 127 LIDEANALPGPSANALLKTLEEPPPRTHFFLCTTAPDLLLPTIRSRCQRVAFAPLSAELR 186 Query: 193 -NLYKALEQLKIMGWDSKRDFVKIAAYG 219 L+ E + + ++R + A G Sbjct: 187 AELHAGEEVAEKLEGAAQRLLEAVEAQG 214 >gi|253699688|ref|YP_003020877.1| DNA polymerase III subunit delta' [Geobacter sp. M21] gi|251774538|gb|ACT17119.1| DNA polymerase III, delta prime subunit [Geobacter sp. M21] Length = 320 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 25/217 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E L + R+ HA LF G +G GK + V D + C Sbjct: 6 VLGQELAVSVLRRSIAMNRVSHAYLFSGIEGCGKKKTALAFVQAVFCGRDEACGVCSSC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++AS H L+L L P G + I +D++R ++ LS + Sbjct: 65 --------RKIASGQ-HPDLHL---LEPD-GAF---IKIDQVRELQKELSYRPFEAPKKA 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID D N + NALLK+LEEPP L ILI+ T+L TI SRC ++ F L Sbjct: 109 CIIDGADKFNLASGNALLKTLEEPPGDALMILIATERSTVLQTILSRCQALTFQPLP--- 165 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 AL + +++ + ++AA GS+ R I+I Sbjct: 166 --AALVEERLVREQFPAEAARVAATLCGGSLRRGIEI 200 >gi|296876245|ref|ZP_06900298.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 15912] gi|296432750|gb|EFH18544.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 15912] Length = 558 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNDCYICESITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ LE L G + D V+I A G + A+ IL Sbjct: 179 LPDIVHHLESILATEGIAYEADAVQIIARRAEGGMRDALSIL 220 >gi|110598224|ref|ZP_01386500.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans DSM 13031] gi|110340139|gb|EAT58638.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans DSM 13031] Length = 402 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 27/247 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 +I R + P + E I + + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSKFADITAQEHITRTIQNSLRMGRLGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 59 ---LQNPDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 +++P + + C + C F SLN + +VD+ Sbjct: 65 QRMMEDPVYLQEVTEPCGECESCRDFDS-------------GTSLNISEFDAASNNSVDD 111 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR +R + G +RV +ID V ++ A NA LK+LEEPP +FI + I Sbjct: 112 IRALRENVRYGPQKGKYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +TI SRC F + ++ K L+ + KI + A GS+ A IL Sbjct: 172 ATIASRCQRFNFKRIPLPDIQKQLQTICDAEKITVEGDALQLIGRKAQGSMRDAQSIL-- 229 Query: 231 DCDKIIS 237 D++I+ Sbjct: 230 --DQVIA 234 >gi|320536106|ref|ZP_08036159.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] gi|320147023|gb|EFW38586.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] Length = 589 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 15/193 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + L + +G++ HA LF G +G GK T R L N + A Sbjct: 12 PQRFEDLLGQDFVAATLQKSIQAGKIAHAYLFSGPRGCGK-TSSARILAKAL-NCESGPA 69 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ ++ + + D + + + N +V+++R+I+ + N Sbjct: 70 PTPCGTCTACT----EITAGSSLDVIEIDGASN---------TSVNDMRQIKDEILFPPN 116 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SRC F Sbjct: 117 ASRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQQFNFK 176 Query: 188 SLSENNLYKALEQ 200 +S L +AL Q Sbjct: 177 LVSVEQLKEALAQ 189 >gi|319942677|ref|ZP_08016984.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319803760|gb|EFW00695.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 455 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 23/227 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + + G + + L++ GR+HHA LF G +G+GK T+ +A + Sbjct: 24 VLARKWRPHDFESIVGQDHVVTALTRALTEGRLHHAYLFTGTRGVGKTTISRIFAKALNC 83 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY-SLNPKTGKWRTVITVDE 114 Q D + P +C A A+ + ++ Y ++ + + +V++ Sbjct: 84 QGADGKGGVTAHPCGVCE-----------ACRAIDEGRFVDYIEMDAASNR-----SVED 127 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ G ++V MID V ++ A NA+LK+LEEPP+ V FIL + + Sbjct: 128 MTQLLERAMYAPTEGRFKVYMIDEVHMLSSTAFNAMLKTLEEPPEYVKFILATTDPQKVP 187 Query: 175 STIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAAYGS 220 T+ SRCL +++ + + LE L G + +R +++ A G+ Sbjct: 188 VTVLSRCLQFTLRNMTPAGIVEHLEFILGKEGIEYERPGLRLIAEGA 234 >gi|293609325|ref|ZP_06691627.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827777|gb|EFF86140.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 721 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + K L Sbjct: 169 CLQFTLRPLAVDEITKHL 186 >gi|221195625|ref|ZP_03568679.1| DNA polymerase III subunits gamma and tau [Atopobium rimae ATCC 49626] gi|221184391|gb|EEE16784.1| DNA polymerase III subunits gamma and tau [Atopobium rimae ATCC 49626] Length = 392 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 128/301 (42%), Gaps = 46/301 (15%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 AF+ ++ Q + +F + + R+ HA LF G G GK A ++ P Sbjct: 21 AFETLHEQ-----PRVREFFRRAFEQRRLSHAYLFVGAPGSGKIAAAEAVAKSIV-CPHG 74 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 C SH H ++ Y +G + ++R I + L Sbjct: 75 GDGTCEDCI----------RVSHHTHPDVHW-YKPQSASGYL-----IGQVREIISDVML 118 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +V ++D D + AANALLK++EEPP+ +FIL + ++ T+L TI SRC + Sbjct: 119 APIKAQNKVYVLDRADLLRTEAANALLKTIEEPPRDAIFILCARSTSTVLPTICSRCQVV 178 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI---- 240 F +LSE + A+ + + R V +A G+ +RA+ L + + + Sbjct: 179 PFRTLSEKDALSAVMRKTVASQTEAR--VALAVIGTPSRALDFLASPSRREVRRLMVEAV 236 Query: 241 ---------DLIHIPRQEYA-----LQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D++ R+ A L +Q+ +E L + DFL + +LKE+ K+ Sbjct: 237 GDTLRCDSWDILGNAREIVAEVKIPLGTLQRAQEEALETHK----DFLEKKVLKEVEKAN 292 Query: 287 K 287 K Sbjct: 293 K 293 >gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia JCVIHMP010] gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia JCVIHMP010] Length = 595 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPATFDSVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTTARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTSEGEACNECESCKAFNEGRS--------YNIFELDAASNN-----SVENIKDLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP +V+FIL + IL TI SRC Sbjct: 114 RIPPQIGKYKVFIIDEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLS 190 F +S Sbjct: 174 IYDFERMS 181 >gi|323164275|gb|EFZ50082.1| DNA polymerase III, subunits gamma and tau [Shigella sonnei 53G] Length = 481 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|254282812|ref|ZP_04957780.1| DNA polymerase III, delta prime subunit [gamma proteobacterium NOR51-B] gi|219679015|gb|EED35364.1| DNA polymerase III, delta prime subunit [gamma proteobacterium NOR51-B] Length = 321 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HAL+ G G G+ L + A +L + C+ +Q S A D Sbjct: 31 RIPHALMLVGAPGTGRRQLAWSLAAMLLCSRPSVAGGCGTCD------VCRQFMSGAHGD 84 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 S L P+ K I +D++R FL TA G +V++I P D M AANALL Sbjct: 85 ----SRWLEPEPEK--RAIGIDQVRGAVQFLQQTAAYGGRKVLVIAPADAMTSAAANALL 138 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC 181 K+LEEP + +L+S + +T+RSRC Sbjct: 139 KTLEEPAGDSVMLLVSDYGERLPATVRSRC 168 >gi|291540313|emb|CBL13424.1| DNA polymerase III, gamma/tau subunits [Roseburia intestinalis XB6B4] Length = 353 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 26/256 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + + GHE I + L ++ HA + G GK + +A LQ Sbjct: 2 RIYMPAF-KDIVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFA-QTLQCEA 59 Query: 64 FSKAPVRMC------------NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTV 109 +K + +PC KQ A D +Y+S+ P T Sbjct: 60 VNKKLEELAGETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHE-KPNT------ 112 Query: 110 ITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I+VD+IR ++ + + + ++ ++D + MN+ A NALLK++EEPP + +L++ Sbjct: 113 ISVDDIRTQLNNDIVIKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTT 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + + L TI SRC+++ ++ + + K L D + D A G+V +AI++ Sbjct: 173 NAESFLPTILSRCVTLNLKAVPDGKIKKFL-MAHYQIPDYQADVCVAFAQGNVGKAIQLA 231 Query: 229 HY-DCDKIISSYIDLI 243 D +++ +S I LI Sbjct: 232 ASDDFNELKASAIQLI 247 >gi|288924767|ref|ZP_06418704.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau [Prevotella buccae D17] gi|288338554|gb|EFC76903.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau [Prevotella buccae D17] Length = 258 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 6 RKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 63 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 CN + C F +Q + Y + L+ + +V+ I+ + Sbjct: 64 HPHDDGEACNECESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI SRC Sbjct: 111 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQ 170 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N L+ + Sbjct: 171 IYDFERMTVPNTIAHLKMV 189 >gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902] gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902] Length = 625 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 27/207 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVR 70 +L G E I L S R+ A LF G +G GK T R L QN D Sbjct: 19 QLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGK-TSSARILARSLNCQNSDGP----- 72 Query: 71 MCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P+PC + +AS D + + + N TG VD IR + Sbjct: 73 --TPEPCGTCDLCRTIASGTALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQ 121 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F Sbjct: 122 ARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRR 181 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKI 215 + ALEQ + W ++++ + I Sbjct: 182 IP----LDALEQH--LTWIAEQESIAI 202 >gi|295100449|emb|CBK97994.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium prausnitzii L2-6] Length = 626 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 27/202 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + I L SGR+ HA LF G +G GK T +A V Sbjct: 7 RKWRPQRFEDVVAQRGIVTALRNQIASGRVGHAYLFTGVRGTGKTTCAKIFAKAV----- 61 Query: 64 FSKAPVRMC----NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 C N DPC + + + ++ D + + + N VD+IR Sbjct: 62 -------NCLHPHNGDPCGECEICRGIDNGSILDVVEMDAASN---------NGVDDIRD 105 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + T + +++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI Sbjct: 106 LRDETAYTPSACHYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATI 165 Query: 178 RSRCLSIKFNSLSENNLYKALE 199 SRC F + ++ + +E Sbjct: 166 LSRCQRYDFTRIGPEDIAQRVE 187 >gi|50365493|ref|YP_053918.1| DNA polymerase III gamma and tau subunits [Mesoplasma florum L1] gi|50364049|gb|AAT76034.1| DNA polymerase III gamma and tau subunits [Mesoplasma florum L1] Length = 631 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 35/226 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + GH+++ + L + ++ H+ LF G++G GK ++ A V Sbjct: 9 RKYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSV----- 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT--VDEIRRIRYF 121 C +A + + NP + VDEIR I+ Sbjct: 64 ------------NCLNIKDGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNN 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +++ +ID V + + A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 112 INSLPFIGKYKIYIIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRC 171 Query: 182 LSIKF---------NSLS---ENNLYK----ALEQLKIMGWDSKRD 211 F N LS EN YK LE++ I+ S RD Sbjct: 172 QIFNFKKIDRISLMNRLSFICENEGYKIDKAVLEEIAIISEGSLRD 217 >gi|301165421|emb|CBW24992.1| DNA polymerase III, tau subunit [Bacteriovorax marinus SJ] Length = 622 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G I K L ++ HA + G +GIGK ++ +A + Sbjct: 5 VLARKWRPKRFQDVIGQSHITKSLQNALSRNKLGHAYILTGTRGIGKTSVARIFAKAI-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + R+ + + C + DF S S+N + +VD+IR + Sbjct: 63 -----RCESRLEDSNACG------TCESCQDFDSAS-SMNVVEIDGASNNSVDDIRDLIG 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +G++++ +ID V ++ +A NALLK+LEEPP +FIL + +L T+ SR Sbjct: 111 NIQYLPTSGHYKIYIIDEVHMLSTSAFNALLKTLEEPPAHAIFILATTEPEKLLGTVLSR 170 Query: 181 CLSIKF 186 C F Sbjct: 171 CQRFDF 176 >gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. NATL1A] gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. NATL1A] Length = 565 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P L G + I+ L Q S R+ A +F G +G GK + F + + L++ Sbjct: 12 YRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCLKSEK 71 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K ++S D + + + N TG V+ IR + Sbjct: 72 ATTTPCGQCE------LCKGISSGNALDVIEIDAASN--TG-------VENIRELIERSR 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 W+V +ID ++ A NALLK+LEEPP++V+FIL + +L TI SRC+ Sbjct: 117 FAPAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMR 176 Query: 184 IKF 186 F Sbjct: 177 FDF 179 >gi|293607024|ref|ZP_06689368.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter piechaudii ATCC 43553] gi|292814621|gb|EFF73758.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter piechaudii ATCC 43553] Length = 794 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 20/198 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 13 RSFD-----TLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C C+ ++ + D+L L + N V+E+ ++ Sbjct: 68 ITSKPCGVCRA--CT----EIDAGRFVDYLELDAASNRG---------VEEMTQLLEQAV 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL Sbjct: 113 YAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL 201 + +++ L+ + Sbjct: 173 FNLKQMPADSIVGHLQAV 190 >gi|290510163|ref|ZP_06549533.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55] gi|289776879|gb|EFD84877.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55] Length = 386 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K R D + ++Y Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTKVEDTR-----DLLDNVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 114 ----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|320156782|ref|YP_004189161.1| DNA polymerase III subunit delta' [Vibrio vulnificus MO6-24/O] gi|319932094|gb|ADV86958.1| DNA polymerase III delta prime subunit [Vibrio vulnificus MO6-24/O] Length = 301 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 13/147 (8%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K GK ITV++IR+ ++ +R+ +I+P + MN +A+NALLK+LEEP Sbjct: 65 KEGK---AITVEQIRQCNRQAQESSQMDGYRLFVIEPAEAMNESASNALLKTLEEPSGSC 121 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 LF+LI H +L TI SRC S++ + ++++ L+ G F+K+A Y V Sbjct: 122 LFLLICHDKKRLLPTIISRCQQW---SITPPAVSESMQWLQQKGVIVNESFLKLAHYSPV 178 Query: 222 -----ARAIKILHYDCDKIISSYIDLI 243 A+ + HY +K+ ++D + Sbjct: 179 TAMHMAKESEFQHY--EKLERQFVDFL 203 >gi|15617964|ref|NP_224248.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae CWL029] gi|16753004|ref|NP_445277.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae AR39] gi|33241379|ref|NP_876320.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae TW-183] gi|4376294|gb|AAD18193.1| DNA Polymerase III Gamma and Tau [Chlamydophila pneumoniae CWL029] gi|7189650|gb|AAF38540.1| DNA polymerase III, gamma subunit [Chlamydophila pneumoniae AR39] gi|33235887|gb|AAP97977.1| DNA polymerase III (gamma and tau subunits) dnaX [Chlamydophila pneumoniae TW-183] Length = 442 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 26/243 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R HA LF G +G GK TL R L Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLA-RILAKALNCVH 69 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ + +PC+ K++AS + D L + + + +++IR+I Sbjct: 70 LSE------DGEPCNQCFSCKEIASGSSLDVLEIDGASHRG---------IEDIRQINET 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 115 VLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 + + E + LE+L +M D D ++ + A +ARA + D + + Sbjct: 175 QKMHLQRIPEKTI---LEKLSLMAQD---DHIEASQEALAPIARAAQGSLRDAESLYDYV 228 Query: 240 IDL 242 I L Sbjct: 229 ISL 231 >gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] Length = 565 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCFNS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C+ K + D + + + N VDEIR IR + Sbjct: 68 TDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 113 YAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR 172 Query: 184 IKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 173 FDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 221 >gi|187477417|ref|YP_785441.1| DNA polymerase III subunits gamma and tau [Bordetella avium 197N] gi|115422003|emb|CAJ48525.1| DNA polymerase III subunit Tau [Bordetella avium 197N] Length = 646 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C+ ++ + D+L L + N V+E+ ++ Sbjct: 65 ETGITSKPCGVCRA--CT----EIDAGRFVDYLELDAASN---------RGVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + ++ L+ + Sbjct: 170 CLQFNLKQMPPESIVGHLQAV 190 >gi|91775925|ref|YP_545681.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT] gi|91709912|gb|ABE49840.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT] Length = 572 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 21/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKSFDELVGQEHVVRALTNALQQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY-SLNPKTGKWRTVITVDEIRRIR 119 S P C A A+ +L Y ++ + + VD++ + Sbjct: 65 ERGVSANPCGQCT-----------ACVAIDKGSFLDYVEMDAASNRG-----VDDMTSLL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V M+D V + +A NA+LK+LEEPP V FIL + + TI S Sbjct: 109 EKAIYAPTQGRYKVYMLDEVHQLTGHAFNAMLKTLEEPPAHVKFILATTDPQKVPVTILS 168 Query: 180 RCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RCL +S + L L Q I + +A GS+ A+ +L Sbjct: 169 RCLQFNLRQMSSSGIAAHLQHVLTQENITFEPVALQLIGRSANGSMRDALSLL 221 >gi|46446706|ref|YP_008071.1| putative DNA polymerase III, delta' subunit, holB [Candidatus Protochlamydia amoebophila UWE25] gi|46400347|emb|CAF23796.1| putative DNA polymerase III, delta' subunit, holB [Candidatus Protochlamydia amoebophila UWE25] Length = 369 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 24/253 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G++ I+ +L + + ++LLF G G+GK + A + +C Sbjct: 11 LVGNDPIKIYLQRMLIKKAIGNSLLFAGPNGVGKGLFAYALASQL------------ICE 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + K + LH +++ Y K G + + +R + + L W++ Sbjct: 59 QEEKN---KYKIENGLHPDIHI-YRPEGKLG----LHGIQSLRELSEEVHLPPYEASWKI 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I + M +AN LLK+ EEPP K + IL+S + +L TI SRC ++ F + + Sbjct: 111 FIIHDAERMLSVSANTLLKTFEEPPPKTVIILLSQSQAALLPTIVSRCRTLHFQPIHASE 170 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI-ISSYIDLIHIPRQEYAL 252 + K L + + + ++ ++ GS+ RA++++ D+ I L +P Y Sbjct: 171 IEKVLVERMYLETEFAQNIASLSQ-GSLGRAVQLIQKKGDESRIFLLNTLSQLPLTSY-- 227 Query: 253 QKMQQIADELLSQ 265 ++ QI EL++Q Sbjct: 228 KEFTQIVGELVAQ 240 >gi|38232882|ref|NP_938649.1| DNA polymerase III subunits gamma and tau [Corynebacterium diphtheriae NCTC 13129] gi|38199140|emb|CAE48764.1| DNA polymerase III subunit gamma/tau [Corynebacterium diphtheriae] Length = 707 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E + + LS SGR++HA LF G +G GK + A + ++ Sbjct: 5 RKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLNCVEG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P CN C + D L + N +VD++R +R Sbjct: 65 P--TSTPCGKCNS--CISLAPNGPGNL--DVTELDAASN---------RSVDDMRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +R+ +ID + R+ ANALLK +EEPP ++FI + IL TIRSR Sbjct: 110 AMYAPAESRYRIFIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQ 200 F L+ ++ LE+ Sbjct: 170 HHYPFRLLTPQSMRGLLER 188 >gi|237749102|ref|ZP_04579582.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] gi|229380464|gb|EEO30555.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] Length = 604 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 27/207 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + LS S R+HHA LF G +GIGK TL A + Sbjct: 5 VLARKYRPKNFENIVGQDHVVRALSHALESQRLHHAYLFTGTRGIGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C + C K + S D++ + + N R I Sbjct: 65 EKGITASPCGIC--EAC----KAIDSDRFVDYVEMDAASN---------------RGIAD 103 Query: 121 FLSLTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 L L Y ++V MID V + A NA+LK+LEEPP+ V FIL + I Sbjct: 104 MLQLLEQAVYAPTAARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIP 163 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL + +++ L ++ Sbjct: 164 VTVLSRCLQFNLKQMPVSHIVDHLSRI 190 >gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola F0289] gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola F0289] Length = 600 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + + L SG++ HA LF G +G+GK T +A + ++P Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F + + Y + L+ + +V+ I+ + Sbjct: 69 TVDGEACNEC--ESCKAFAEGRS--------YNIFELDAASNN-----SVENIKSLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N+ L+ + Sbjct: 174 IYDFERMTVPNIISHLKNV 192 >gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] Length = 604 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 16/197 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + L SG++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTKEGEACNECESCKAFTEGRS--------YNIFELDAASNN-----SVENIKTLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALE 199 F ++ N+ L+ Sbjct: 174 IYDFERMTVPNIINHLK 190 >gi|227328730|ref|ZP_03832754.1| DNA polymerase III subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 687 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFAHVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LEQ+ Sbjct: 170 CLQFHLKALDVEQIRAHLEQV 190 >gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola CRIS 18C-A] gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola CRIS 18C-A] Length = 600 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + + L SG++ HA LF G +G+GK T +A + ++P Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F + + Y + L+ + +V+ I+ + Sbjct: 69 TVDGEACNEC--ESCKAFAEGRS--------YNIFELDAASNN-----SVENIKSLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ N+ L+ + Sbjct: 174 IYDFERMTVPNIISHLKNV 192 >gi|331661852|ref|ZP_08362775.1| DNA polymerase III subunit tau [Escherichia coli TA143] gi|331060274|gb|EGI32238.1| DNA polymerase III subunit tau [Escherichia coli TA143] Length = 526 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDIEQIRHQLEHI 190 >gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109] gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109] Length = 626 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 23/205 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L S R+ A LF G +G GK T R L N S+ P Sbjct: 19 QLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGK-TSSARILARSL-NCLNSEGP---- 72 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P+PC +A+ D + + + N TG VD IR + Sbjct: 73 TPEPCGTCELCTTIAAGTALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKI 215 N L K L W ++++ ++I Sbjct: 184 LNALNKHL------SWIAEQEAIEI 202 >gi|170692443|ref|ZP_02883606.1| DNA polymerase III, delta prime subunit [Burkholderia graminis C4D1M] gi|170142873|gb|EDT11038.1| DNA polymerase III, delta prime subunit [Burkholderia graminis C4D1M] Length = 347 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 44/183 (24%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-----NPDPCS------- 78 G HALL G+ GIGK R+A H+ Q +C N +PC Sbjct: 18 GHWPHALLLHGQAGIGK----LRFAQHLAQG--------LLCEDQRENGEPCGACVACNW 65 Query: 79 ------PFVKQMASHALHDFLYLSYSL--------------NPKTGKWRTVITVDEIRRI 118 P + + AL L Y KT I +++IR + Sbjct: 66 FVQGNHPDYRIVVPEALAAEAGLGYGADDKADKADKADADEGKKTRAPSKEIKIEQIRGL 125 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F+ + ++ G RV+++ P +G+N AANALLK+LEEPP V+F+++S +L TI Sbjct: 126 LDFVGVGSHRGGARVVVLYPAEGLNIAAANALLKTLEEPPAGVVFLMVSARVDRLLPTII 185 Query: 179 SRC 181 SRC Sbjct: 186 SRC 188 >gi|291286041|ref|YP_003502857.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio acetiphilus DSM 12809] gi|290883201|gb|ADD66901.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio acetiphilus DSM 12809] Length = 534 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R P L G E + L GR+ HA LF G +G+GK + A +L Sbjct: 8 RKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTS-----AARILAKAV 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PV +PC+ ++ S D + + + N +DEIR +R Sbjct: 63 NCLEPV---GSNPCNKCENCTEITSGTSMDVVEIDGASNRG---------IDEIRELREA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + +A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VRFLPVKCKFKVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 FN + +Y +L Sbjct: 171 QKYDFNKIPFEIMYDSL 187 >gi|55981921|ref|YP_145218.1| DNA polymerase III holoenzyme subunit tau [Thermus thermophilus HB8] gi|55773334|dbj|BAD71775.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus HB8] Length = 529 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 19/192 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P+ Q + G E +++ L + GR+ A LF G +G+GK T A V Q Sbjct: 6 RRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGCQGE 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D P +C P + + A D + + + N +V+++R +R + Sbjct: 66 D---PPCGVC------PHCQAVQRGAHPDVVEIDAASN---------NSVEDVRELRERI 107 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L + +V ++D ++++A NALLK+LEEPP VLF+ + + TI SR Sbjct: 108 HLAPLSAPRKVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQ 167 Query: 183 SIKFNSLSENNL 194 +F L+E + Sbjct: 168 HFRFRRLTEEEI 179 >gi|15827007|ref|NP_301270.1| DNA polymerase III subunit delta' [Mycobacterium leprae TN] gi|221229485|ref|YP_002502901.1| DNA polymerase III subunit delta' [Mycobacterium leprae Br4923] gi|3097239|emb|CAA18816.1| hypothetical protein MLCB2548.29c [Mycobacterium leprae] gi|13092554|emb|CAC29710.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932592|emb|CAR70295.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 405 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 14/170 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G M HA L G G G++ +A + DF C C MA Sbjct: 37 GTMTHAWLITGPPGSGRSVAAVCFAAALQCTADFQDGGP-GCGR--CRACTTTMAGTHAD 93 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + L+ I VDE+R I + S +TGYW++++I+ D + AANAL Sbjct: 94 VRRVIPDGLS---------IGVDEMRAIVHEASRRPSTGYWQIVLIEDADRLTEGAANAL 144 Query: 151 LKSLEEPPQKVLFILI--SHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LK +EEPP +F+L S A I T+RSRC + + S + + L Sbjct: 145 LKVVEEPPSSTVFLLCAPSVAPEDIAVTLRSRCRHVALVTPSHAAIARVL 194 >gi|238899119|ref|YP_002924801.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466879|gb|ACQ68653.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 640 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 25/231 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L GR+HHA L G +G+GK ++ A + Sbjct: 8 RKWRPQTFSEVVGQEHVLTALVNSLSLGRIHHAYLLSGTRGVGKTSIARLIAKGLNCTSG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + + D + + + K V++ R + L Sbjct: 68 ITATPCGKC------IHCQGIEQGHFIDLIEIDAASRTK---------VEDTRELLDNLP 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SRCL Sbjct: 113 YSPTQGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTEPKKLPVTIISRCLQ 172 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKI 227 +L+ N L K L KI DS + +K+ AA GS+ A+ + Sbjct: 173 FHLKALNALVILNQLEKILAAEKI---DSDTEALKLLAKAASGSMRDALSL 220 >gi|125717830|ref|YP_001034963.1| DNA polymerase III subunits gamma and tau [Streptococcus sanguinis SK36] gi|125497747|gb|ABN44413.1| DNA-directed DNA polymerase III chain, putative [Streptococcus sanguinis SK36] gi|325687936|gb|EGD29956.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK72] Length = 556 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L G D +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSIL 220 >gi|322513952|ref|ZP_08067027.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae ATCC 25976] gi|322120178|gb|EFX92136.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae ATCC 25976] Length = 467 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 19/225 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 C+ +L + N+L L+Q I + + + AA GS+ Sbjct: 170 CMQFHLRALDQVQIANHLEFILQQENIPYESAAMEKLAKAAQGSI 214 >gi|269302914|gb|ACZ33014.1| DNA polymerase III, subunits gamma and tau [Chlamydophila pneumoniae LPCoLN] Length = 442 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 26/243 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R HA LF G +G GK TL R L Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALIFNRAAHAYLFSGIRGTGKTTLA-RILAKALNCVH 69 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ + +PC+ K++AS + D L + + + +++IR+I Sbjct: 70 LSE------DGEPCNQCFSCKEIASGSSLDVLEIDGASHRG---------IEDIRQINET 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 115 VLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 + + E + LE+L +M D D ++ + A +ARA + D + + Sbjct: 175 QKMHLQRIPEKTI---LEKLSLMAQD---DHIEASQEALAPIARAAQGSLRDAESLYDYV 228 Query: 240 IDL 242 I L Sbjct: 229 ISL 231 >gi|225868888|ref|YP_002744836.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. zooepidemicus] gi|225702164|emb|CAW99865.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. zooepidemicus] Length = 558 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 17/180 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRM 71 + G I L Q SG++ HA LF G +G GK + +A + P+ K P Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPNQVKGEPCNH 74 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + + + +L D + + + N VDEIR IR + + + Sbjct: 75 C--DIC----RDITTGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATY 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F ++ + Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQ 179 >gi|30248450|ref|NP_840520.1| dnaX; DNA polymerase III (subunits tau and gamma) protein [Nitrosomonas europaea ATCC 19718] gi|30138336|emb|CAD84344.1| dnaX; DNA polymerase III (subunits tau and gamma) protein [Nitrosomonas europaea ATCC 19718] Length = 525 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 6 VLARKWRPKDFSELVGQEHVVRALINSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP C C + D + L + N + VD +R + Sbjct: 66 EQGVTAAPCGKCAA--C----MAIDQGNFIDLIELDAASNTQ---------VDAMRELLD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++R+A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 111 NAQYAPVAARYKVYLIDEVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKI---AAYGSVARAIKIL 228 CL + + + + L E L + G + +++ AA GS+ A+ +L Sbjct: 171 CLQFNLKQIPPSLIVERLTEILSMEGIPADAAGLRLLAQAAKGSLRDALSLL 222 >gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ] gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ] Length = 551 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 19/223 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P +++ + D + + N TG VD++R +R Sbjct: 65 EQGVTLEPCNVC------PHCREITDGSSTDVFEIDGASN--TG-------VDDVRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NSRYLPSHSRYKIYIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 C F + L K + +L+ + D + + AA +AR Sbjct: 170 CQRFDFKRVP---LIKIVGRLREIA-DQEGIVINDAALALIAR 208 >gi|46199890|ref|YP_005557.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus HB27] gi|46197517|gb|AAS81930.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus HB27] Length = 529 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 19/192 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P+ Q + G E +++ L + GR+ A LF G +G+GK T A V Q Sbjct: 6 RRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGCQGE 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D P +C P + + A D + + + N +V+++R +R + Sbjct: 66 D---PPCGVC------PHCQAVQRGAHPDVVEIDAASN---------NSVEDVRELRERI 107 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L + +V ++D ++++A NALLK+LEEPP VLF+ + + TI SR Sbjct: 108 HLAPLSAPRKVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQ 167 Query: 183 SIKFNSLSENNL 194 +F L+E + Sbjct: 168 HFRFRRLTEEEI 179 >gi|308048898|ref|YP_003912464.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica DSM 9799] gi|307631088|gb|ADN75390.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica DSM 9799] Length = 830 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + K L+ R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPASFDQVVGQEHVLKALTHALEQNRLHHAYLFTGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++++ D L + + K VD+ R I Sbjct: 65 ETGITATPCGQCS------HCREISEGRFVDLLEIDAASRTK---------VDDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYQPVRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSL 189 CL S+ Sbjct: 170 CLQFNLKSV 178 >gi|294012157|ref|YP_003545617.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum UT26S] gi|292675487|dbj|BAI97005.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum UT26S] Length = 536 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 14/183 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L GR+ HA L G +G+GK + R L Sbjct: 10 VLARKYRPRNFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTA-RLIAKALN 68 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P DPC MA L TG VD+IR I Sbjct: 69 CVGPDGQGGPTI----DPCGLCEPCMAIGEGRHIDVLEMDAASHTG-------VDDIRSI 117 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 A + +++ +ID V ++RNA NALLK+LEEPP+ V F+L + + T+ Sbjct: 118 IDIAGKGAYSARYKIYIIDEVHMLSRNAFNALLKTLEEPPEHVKFVLATTEVNKVPVTVL 177 Query: 179 SRC 181 SRC Sbjct: 178 SRC 180 >gi|2583049|gb|AAB82595.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] Length = 529 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 19/192 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P+ Q + G E +++ L + GR+ A LF G +G+GK T A V Q Sbjct: 6 RRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGCQGE 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D P +C P + + A D + + + N +V+++R +R + Sbjct: 66 D---PPCGVC------PHCQAVQRGAHPDVVEIDAASN---------NSVEDVRELRERI 107 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L + +V ++D ++++A NALLK+LEEPP VLF+ + + TI SR Sbjct: 108 HLAPLSAPRKVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQ 167 Query: 183 SIKFNSLSENNL 194 +F L+E + Sbjct: 168 HFRFRRLTEEEI 179 >gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 558 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 17/180 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRM 71 + G I L Q SG++ HA LF G +G GK + +A + P+ K P Sbjct: 16 EMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPNQVKGEPCNH 74 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + + + +L D + + + N VDEIR IR + + + Sbjct: 75 C--DIC----RDITTGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATY 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F ++ + Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQ 179 >gi|270307900|ref|YP_003329958.1| DNA-directed DNA polymerase, delta prime subunit [Dehalococcoides sp. VS] gi|270153792|gb|ACZ61630.1| DNA-directed DNA polymerase, delta prime subunit [Dehalococcoides sp. VS] Length = 339 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 8/214 (3%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + + FL ++ HA +F G G+GK + +A + N S+ P + C Sbjct: 3 RIIGQDKVVSFLGNSLGQDKLCHAYVFYGPSGVGKQRMALTFAQAL--NCQASQPPCQEC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C + +H L L + + GK + I V ++ I++ SL G ++ Sbjct: 61 LV--CERILSGNHPDIIH--LELLSAEDASDGKAKAEIGVKQVEDIQHAASLPPFEGKYK 116 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +I + +++ ++N LLK+LEEP + +FIL++ +L T+ SRC ++ + N Sbjct: 117 VFIIHHAEKLSQESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVISRCQILELRYVEIN 176 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 + AL + + + K + + ++G + A++ Sbjct: 177 LIRDALLEQGLA--EEKAELLSHLSHGRIGWAME 208 >gi|187923930|ref|YP_001895572.1| DNA polymerase III subunit delta' [Burkholderia phytofirmans PsJN] gi|187715124|gb|ACD16348.1| DNA polymerase III, delta prime subunit [Burkholderia phytofirmans PsJN] Length = 344 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK----QMAS 86 G HALL G+ GIGK R+A H+ Q + N +PC V + Sbjct: 18 GHWPHALLLHGQAGIGK----LRFAQHLAQG---LLCEAQQPNGEPCGACVACNWFAQGN 70 Query: 87 H-----ALHDFLYLSYSLNP---------------KTGKWRTVITVDEIRRIRYFLSLTA 126 H + + L LN KT I +++IR + F+ + + Sbjct: 71 HPDYRIVVPEALAAEAGLNSGADEKADKADADEGKKTRAPSKEIKIEQIRGLLDFVGVGS 130 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G RV+++ P +G+N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 131 HRGGARVVVLYPAEGLNIAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 185 >gi|308446687|ref|XP_003087240.1| hypothetical protein CRE_04493 [Caenorhabditis remanei] gi|308258711|gb|EFP02664.1| hypothetical protein CRE_04493 [Caenorhabditis remanei] Length = 252 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 19/165 (11%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA L G G G++ L R+A ++ +P Q+A+ D Sbjct: 31 HAWLITGPPGSGRSNLALRFAAALIAR-----------DPADRDHVYAQVAARTHPDVAV 79 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 LS R +I ++++R++ + + G +RVI+I+ D M+ +A+N LLK+L Sbjct: 80 LSTE--------RVIIPIEDVRKLIPTAYYSPSEGRFRVIVIEDADRMSEHASNVLLKAL 131 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 EEPP++ +++L + + +L TIRSR S++ + + + + L+ Sbjct: 132 EEPPERTVWVLCAPSEADLLPTIRSRARSLRLVTPQPDQVAQMLQ 176 >gi|260592626|ref|ZP_05858084.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] gi|260535396|gb|EEX18013.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] Length = 421 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 33/247 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G E ++ L Q R+ HA+LF G +G+GK L +A ++L Sbjct: 48 VIGQEATKQRLLQMIKEDRVPHAMLFCGPEGVGKMALAMAFANYLLAGDEVDNTESPLIS 107 Query: 60 ---------QNPD--FS----KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKT 103 ++PD FS K P + P S F K+ + + + Sbjct: 108 NAIAMLRKWEHPDLHFSFPTIKLPSMSGDHQPVSSDFAKEWHELIMCGAYFTMNQWMKQM 167 Query: 104 G--KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 G + +IT E + LSL ++ G ++V +I + MN +AN LLK LEEPPQ Sbjct: 168 GATTQQAIITGAESDELSRVLSLKSSQGGYKVSIIWRPERMNLTSANKLLKLLEEPPQGT 227 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +F+++ +L TI SR I + +N + +AL + + D+ + I A+GS Sbjct: 228 IFLMVCEEPEKLLETIISRTQRIDVKRIDDNAIEQALIHQRGIEPDAAKRIAHI-AHGSW 286 Query: 222 ARAIKIL 228 +A++ L Sbjct: 287 LKALETL 293 >gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CB0101] Length = 622 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L SGR+ A LF G +G GK T R L N P Sbjct: 19 QLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGK-TSSARILARSL-NCISGDGP---- 72 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P+PC +A+ D + + + N TG VD IR + Sbjct: 73 TPEPCGTCELCTSIANGNALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAA 217 + L + L GW ++++ + I A Sbjct: 184 LDALERHL------GWIAEQEQISITA 204 >gi|210623263|ref|ZP_03293680.1| hypothetical protein CLOHIR_01630 [Clostridium hiranonis DSM 13275] gi|210153664|gb|EEA84670.1| hypothetical protein CLOHIR_01630 [Clostridium hiranonis DSM 13275] Length = 316 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 135/270 (50%), Gaps = 49/270 (18%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-----QNPD 63 +Y ++ G + ++++S +++A +FEG +GIGK T +A ++ +PD Sbjct: 6 LYFDQIKGQDFAKRYISNAMNKNMLNNAYIFEGIKGIGKKTFAREFAKILIGVSPENSPD 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 F+ K+ SH I +++IR+++ + Sbjct: 66 FN-------------VIAKEEGSHR---------------------IKIEKIRKMKEDVY 91 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + Y ++ +I+ + M+ A NA+LK++EEPP +FILI+ +L+TI+SRC Sbjct: 92 EKPISDY-KIYVIENAELMSEEAQNAILKTIEEPPGYAIFILIAENKEALLNTIKSRCDI 150 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA---YGSVARAIKILHYDCDKIISSYI 240 +KF LS + + L ++ +G D ++ K+ A GS+ RAI++ + + K + +I Sbjct: 151 VKFVPLSNDIVKNHL--IENLGLD--EEYAKMCANFSKGSITRAIELANDEEFKEMREFI 206 Query: 241 -DLIHIPRQEYALQKMQQIADELLSQDQKI 269 + I I ++ L+ ++++AD + +++I Sbjct: 207 QNCISIISEKKKLE-IERLADGVEKYEKQI 235 >gi|296121606|ref|YP_003629384.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776] gi|296013946|gb|ADG67185.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776] Length = 365 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 27/212 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMASHAL 89 GR+ H LF G QG+GK + ++A +L + + C C PF+ +H Sbjct: 24 GRLAHGYLFVGPQGVGKRLVAQKFAQAILCK-ERKPHELEACGTCTSCRPFLA--GNHP- 79 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRR---IRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 DF + + ++ E R + + LSL +G ++ +ID +N Sbjct: 80 -DFQVVECPEGKREIPIDLLVGSKENRGQEGLCHGLSLKPLSGSRKIAIIDDAHLLNDAG 138 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA+LK+LEEPP+ + IL++ T+L TIRSRC ++F L Y+ +E L Sbjct: 139 ANAILKTLEEPPELAVLILVASTLETVLPTIRSRCHLVRFQQLG----YEDIEAL----- 189 Query: 207 DSKRDFVKIAAYGSVARA-IKILHYDCDKIIS 237 ++A GS+ +K + CD +S Sbjct: 190 --------LSAEGSIETGMVKEVSQMCDGSLS 213 >gi|148653193|ref|YP_001280286.1| DNA-directed DNA polymerase [Psychrobacter sp. PRwf-1] gi|148572277|gb|ABQ94336.1| DNA polymerase III, delta prime subunit [Psychrobacter sp. PRwf-1] Length = 374 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 37/197 (18%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL----QNPDFSKAPVRMCNPDPCSPFVKQMASH 87 R+ H LLF G QGIGK +R+ +L + P + C + +AS Sbjct: 29 RLPHGLLFAGMQGIGKRAFVWRFVAWLLCDNREQPSSQQGACGQCQS------CQWLASG 82 Query: 88 ALHDFLYLSYSLNP----------KTGKWRT---------------VITVDEIRRIRYFL 122 D L S P K GK T I +D+IR ++ F+ Sbjct: 83 THPDLQVLPISSLPSLEVEAATATKGGKSNTKKASENEAAKASVKLSIKIDDIRELQPFI 142 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S ++G RV +ID D M AANALLK+LEEP + + +LIS +L TIRSR Sbjct: 143 S-QGSSGR-RVCVIDYADKMTVAAANALLKTLEEPREGIHLLLISDMPTKLLPTIRSRVQ 200 Query: 183 SIKFNSLSENNLYKALE 199 + + ++ + LE Sbjct: 201 QVAMDPMAHEQVVAYLE 217 >gi|15835577|ref|NP_300101.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae J138] gi|8978415|dbj|BAA98252.1| DNA polymerase III gamma and tau [Chlamydophila pneumoniae J138] Length = 442 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 26/243 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L R HA LF G +G GK TL R L Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLA-RILAKALNCVH 69 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ + +PC+ K++AS + D L + + + +++IR+I Sbjct: 70 LSE------DGEPCNQCFSCKEIASGSSLDVLEIDGASHRG---------IEDIRQINET 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 115 VLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHRIPGTILSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSY 239 + + E + LE+L +M D D ++ + A +ARA + D + + Sbjct: 175 QKMHLQRIPEKTI---LEKLSLMAQD---DHIEASQEALAPIARAAQGSLRDAESLYDYV 228 Query: 240 IDL 242 I L Sbjct: 229 ISL 231 >gi|262370428|ref|ZP_06063754.1| DNA polymerase III [Acinetobacter johnsonii SH046] gi|262314770|gb|EEY95811.1| DNA polymerase III [Acinetobacter johnsonii SH046] Length = 698 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------PTCTAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + + L Sbjct: 169 CLQFTLRPLAVDEITEHL 186 >gi|237730453|ref|ZP_04560934.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2] gi|226905992|gb|EEH91910.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2] Length = 642 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|209694644|ref|YP_002262572.1| DNA polymerase III subunits gamma and tau [Aliivibrio salmonicida LFI1238] gi|208008595|emb|CAQ78770.1| DNA polymerase III subunit tau [Aliivibrio salmonicida LFI1238] Length = 714 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQSHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ K++ D L + + K R ++ + + R Sbjct: 65 EEGITSTPCGVCS------TCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPAR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 118 --------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +S + ++ L+ Sbjct: 170 CLQFHLKHISVDQIHAQLD 188 >gi|323526149|ref|YP_004228302.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. CCGE1001] gi|323383151|gb|ADX55242.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1001] Length = 944 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL ++ + S P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNCETGVSSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|303235528|ref|ZP_07322137.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens FB035-09AN] gi|302484265|gb|EFL47251.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens FB035-09AN] Length = 596 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + L +G++ HA LF G +G+GK T +A + N + Sbjct: 9 RKYRPMSFASVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C F + + Y + L+ + +V+ I+ + Sbjct: 67 HPTAEGEACNECESCKSFDEGRS--------YNIFELDAASNN-----SVENIKSLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQLGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F +S + L+Q+ Sbjct: 174 IYDFERMSVQGIINHLKQV 192 >gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT 9312] gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT 9312] Length = 579 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 15/199 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P L G I L Q + ++ A LF G +G GK T R L Sbjct: 10 QKYRPSNLDELVGQNFISITLKQALLTKKISPAYLFNGPRGTGK-TSSARIFAKSLNCQA 68 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 F + + C D C +Q+ D + + + N TG V+ IR I Sbjct: 69 FEEPTIHPCGKCDLC----RQITDGNALDIIEIDAASN--TG-------VENIREIIERA 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC Sbjct: 116 RFAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRCQ 175 Query: 183 SIKFNSLSENNLYKALEQL 201 F +S +++++ L ++ Sbjct: 176 KFDFRRISPSDIFQHLSEI 194 >gi|207723139|ref|YP_002253538.1| dna polymerase III subunits tau and gamma protein (partial sequence n terminus) [Ralstonia solanacearum MolK2] gi|206588332|emb|CAQ35295.1| probable dna polymerase III subunits tau and gamma protein (partial sequence n terminus) [Ralstonia solanacearum MolK2] Length = 513 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 32/212 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 M+ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 1 MLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 60 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 61 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASNRG------- 101 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 102 --VDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 159 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I T+ SRCL + ++ L+++ Sbjct: 160 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDRI 191 >gi|90579078|ref|ZP_01234888.1| hypothetical DNA polymerase III, delta prime subunit [Vibrio angustum S14] gi|90439911|gb|EAS65092.1| hypothetical DNA polymerase III, delta prime subunit [Vibrio angustum S14] Length = 320 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 17/170 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+HHA+L +G G+ L + A VL QN + P +C+ C F + SH Sbjct: 21 RLHHAILLLAVKGSGRDVLARQLAKTVLCQNNE--TEPCDVCHS--CKLF--EANSHP-- 72 Query: 91 DFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 DF + + P + GK I VD +R+ + + T++ RVI+I+ D M +NA Sbjct: 73 DF----HVIKPEQEGK---QIGVDAVRQCNRWATETSHLNGQRVILIEHADVMGEAGSNA 125 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +LK+LEEPPQ FIL + + ++L TI SRC + +E N+ + +E Sbjct: 126 ILKTLEEPPQGCQFILTAQSLDSLLPTIVSRCNKWRLPIPAEANVKQWVE 175 >gi|91783455|ref|YP_558661.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] gi|91687409|gb|ABE30609.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] Length = 957 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|170718664|ref|YP_001783859.1| DNA polymerase III subunit delta' [Haemophilus somnus 2336] gi|168826793|gb|ACA32164.1| DNA polymerase III, delta prime subunit [Haemophilus somnus 2336] Length = 352 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 Q + + HHALLF+ EQGIG L AG ++ + R C C+ F + Sbjct: 40 QPFLQEKGHHALLFKAEQGIGIEQLIENIAGWLMCRKKDAPQSCRQC--QSCALF--RAG 95 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 +H DF L SL+ K I V+++R + +S A G +V+ I + + + Sbjct: 96 NHP--DFYRLE-SLDNKD------IGVEQVREMNEKVSQFAKQGGNKVVFIRQAERLTES 146 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 AANALLK+LEEP F+L S +L+TI SRC + N+ +E L+Q Sbjct: 147 AANALLKTLEEPRPHTYFLLQMDFSAGLLATIYSRCQAWVINTPTEQQGLVWLQQ 201 >gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter bethesdensis CGDNIH1] gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis CGDNIH1] Length = 686 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 139/340 (40%), Gaps = 47/340 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L + R+ HA + G +G+GK T R L Sbjct: 50 VLARQYRPRHFDDLIGQDALVRTLRNAFALNRVAHAFMLTGVRGVGKTTTA-RIIARALN 108 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 D P DPC P + + D + + + +TG VD++R Sbjct: 109 CTGADGQGGPTA----DPCGVCPNCTAILADRHPDVVEMDAAS--RTG-------VDDVR 155 Query: 117 RI---RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 I F L A T +V +ID V ++RNA NALLK+LEEPP V FI + + Sbjct: 156 EIIEATRFRPLQART---KVFIIDEVHMLSRNAFNALLKTLEEPPPHVTFIFATTELRKV 212 Query: 174 LSTIRSRCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 T+ SRC + L + LEQ + + AA GSV + +L Sbjct: 213 PVTVLSRCQRFDLRRIDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLL- 271 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 D+ I+ I I Q+AD L D+ + D L+E ++ SA A Sbjct: 272 ---DQAIAQNDPGIPI--------SEAQVADMLGLADRGMVLD-LLEALMAGDTASALAV 319 Query: 290 ALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + AD + + L++ +H L R + I HL Sbjct: 320 TDTAHARGAD-LGMVLQDLLELIH-----TLTRLKTIPHL 353 >gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str. NATL2A] gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. NATL2A] Length = 565 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P L G + I+ L Q S R+ A +F G +G GK + F + + L++ Sbjct: 12 YRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCLKSEK 71 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K ++S D + + + N TG V+ IR + Sbjct: 72 ATTTPCGQCE------LCKGISSGNALDVIEIDAASN--TG-------VENIRELIERSR 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 W+V +ID ++ A NALLK+LEEPP++V+FIL + +L TI SRC+ Sbjct: 117 FAPAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMR 176 Query: 184 IKF 186 F Sbjct: 177 FDF 179 >gi|217966691|ref|YP_002352197.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum DSM 6724] gi|217335790|gb|ACK41583.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum DSM 6724] Length = 518 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 32/261 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I L + HA LF G +G GK T+ R L + Sbjct: 7 RKWRPQTFEEVVGQEHIVITLQNSLKYAHIGHAYLFAGPRGTGKTTVA-RILAKAL---N 62 Query: 64 FSKAPVRMCNPDPC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P P PC ++A D + + + N +DEIR IR Sbjct: 63 CAKGP----TPTPCLKCESCVEIAEGRSIDVIEIDAASNR---------GIDEIRDIREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L ++V +ID V + A NALLK LEEPP+ V+FI+ + + TI SRC Sbjct: 110 ARLLPVRDRYKVYIIDEVHMLTNEAFNALLKILEEPPEHVIFIMATTEPQKVPLTILSRC 169 Query: 182 LSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YD 231 F L+ + + K L E KI + + I + GS+ AI +L Y Sbjct: 170 QRFDFRRLTRDEIIKQLAKIAESEGAKI--SEGALRLIAIQSQGSMRDAISLLEQLLVYS 227 Query: 232 CDKIISSYI-DLIHIPRQEYA 251 +I + +L+ +P E+ Sbjct: 228 DQEITEDFARNLLGLPTYEFT 248 >gi|134297921|ref|YP_001111417.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum reducens MI-1] gi|134050621|gb|ABO48592.1| DNA polymerase III, tau subunit [Desulfotomaculum reducens MI-1] Length = 540 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Y + G I + L ++ HA LF G +G GK T VL Sbjct: 8 RTWRPQYFSDIVGQRHITRTLQNALLQDKVAHAYLFCGPRGTGKTT-----TAKVLAKAL 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P + +PC+ A + + + G +DEIR +R + Sbjct: 63 NCLVPT---SGEPCNDCENCRAVNEGNSVDVVEIDAASNRG-------IDEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +TG +V +ID V + A NALLK+LEEPP V+F+L + + + TI SRC Sbjct: 113 FAPSTGEKKVYIIDEVHMLTDQAFNALLKTLEEPPSHVVFVLATTEAHKVPVTILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + + + L+++ I + + AA G + A+ IL Sbjct: 173 FDFRRIKPDEMVGRLQEVAQGANIEVEEEALQLIAKAAEGGLRDALSIL 221 >gi|72383331|ref|YP_292686.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. NATL2A] gi|72003181|gb|AAZ58983.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. NATL2A] Length = 319 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 22/233 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVR 70 Q +FG + K L + HA LF G +G+G+ + +L +N + ++ Sbjct: 5 QNIFGQDLAIKILKSAISKEHISHAYLFSGPEGVGRKKTAKIFINSILDKNQEKKSTKIK 64 Query: 71 MCN---PD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + N PD P Q S +S P+ I +++I+ I FL Sbjct: 65 INNNNHPDLLWVEPSYIVQGQSISQTKAILDGISMKSPPQ-------IRLNQIKEIIEFL 117 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +++I+ ++ +N +AANALLK+LEE LFILI+ +LSTIRSRC Sbjct: 118 GKKPFESERSIVIIEDIERINESAANALLKTLEETCTG-LFILITQRPEKLLSTIRSRCQ 176 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-----AYGSVARAIKILHY 230 + F L++N + K +++ +++ KI +YGS R I L + Sbjct: 177 IVPFIRLNDNQVNKIIKKSEVIQEIDDITSNKIQELIDFSYGSPGRCIVNLQF 229 >gi|307131528|ref|YP_003883544.1| DNA polymerase III, delta prime subunit [Dickeya dadantii 3937] gi|306529057|gb|ADM98987.1| DNA polymerase III, delta prime subunit [Dickeya dadantii 3937] Length = 336 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 17/177 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHALL G+G A+L + ++ +L + PD +K+ R C+ + M++ Sbjct: 22 RGHHALLLHAIDGMGDASLAYAFSRWLLCRQPDGAKSCGR-CH------SCELMSAGTHP 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ ++L+P+ GK + VD +R + + + G +V+ + + + AANAL Sbjct: 75 DW----HTLSPEKGK--HSLGVDAVRDVLEPVYQRSRQGGAKVVWLPQAESLTEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LK+LEEPP + F+L +L+T+RSRCL + + +E+ + ++ L+ G D Sbjct: 129 LKTLEEPPAQTYFLLGCRDPGRLLATMRSRCLHLYLDVPTES---QGMQWLRGRGHD 182 >gi|160902859|ref|YP_001568440.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95] gi|160360503|gb|ABX32117.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95] Length = 467 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 30/280 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + K+ + HA +F G +G GK T R VL Sbjct: 7 RKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTA-RILAKVLN--- 62 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 K P + NP + C V + +++ D + + + N +DEIR IR Sbjct: 63 -CKDP-QGYNPCNKCENCV-SINNNSFLDVIEMDAASNR---------GIDEIRNIRDSS 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID + R A NALLK+LEEPP V+FIL + + TI SR Sbjct: 111 NYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQ 170 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILH----YDCDK 234 I F +L +N + + L+ + G + + D ++I A G + AI +L + K Sbjct: 171 IINFKNLGQNEIVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKK 230 Query: 235 II-SSYIDLIHIPRQEYALQKMQQI----ADELLSQDQKI 269 I +D++ + + + +Q ++ + DE L+Q + + Sbjct: 231 ITHQDTLDILGLFDENFIVQFIENVYNSKIDEFLAQSEDL 270 >gi|283834204|ref|ZP_06353945.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220] gi|291070357|gb|EFE08466.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220] Length = 641 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|294660559|ref|NP_853383.2| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum str. R(low)] gi|284812222|gb|AAP56951.2| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum str. R(low)] gi|284930879|gb|ADC30818.1| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum str. R(high)] Length = 601 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 26/243 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 + + P + G I L + ++ A +F+G +GIGK ++ A + L Sbjct: 6 QKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYNCLNK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D +CN + + S + Y L+ T VDEIR+I Sbjct: 66 KDGD-----VCNQCSACELINENKSQDI-------YELDAATNNG-----VDEIRKIIDA 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +V ++D ++ A NALLK+LEEPP+ V+FI + I T+ SRC Sbjct: 109 INYAPMNLSKKVYILDEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH---YDCDK 234 S F L +++L L +Q KI DS D + A GS + IL YD +K Sbjct: 169 QSFNFKKLDKDDLVDVLKNVVKQEKIKIEDSAIDKIADFASGSARDGLSILQQLAYDKNK 228 Query: 235 IIS 237 I+ Sbjct: 229 KIT 231 >gi|330998150|ref|ZP_08321977.1| putative DNA polymerase III, delta' subunit [Paraprevotella xylaniphila YIT 11841] gi|329569059|gb|EGG50853.1| putative DNA polymerase III, delta' subunit [Paraprevotella xylaniphila YIT 11841] Length = 371 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 30/217 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-----------QN 61 R+ G DI++ L Q +GR+ HALL G G GK L YA ++L + Sbjct: 4 RVVGQTDIKERLLQEAQAGRVPHALLLSGPSGCGKLALAVSYAQYLLCHRPGAHDACGEC 63 Query: 62 PDFSKAPVRMCNPDP--CSPFVK-QMASHALHDFLY----------LSYSLNPKTGKWRT 108 P +A +PD P +K + A ++ D L + LN G + Sbjct: 64 PS-CRAFTHFVHPDLHFVFPIIKYKTAESSVCDVYIDTWRKRLQAGLYFDLNDWLGDMKA 122 Query: 109 -----VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 +I E +I+ L+L + G +++++ + MN AN LLK +EEPP++ F Sbjct: 123 ENQQALIYAAEAAQIQRKLALKSTLGGRKILIVWMPEKMNAECANKLLKLIEEPPEQTNF 182 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +L+S IL TI SR I+ + +L +AL + Sbjct: 183 LLVSDEPEKILPTILSRTQQIEVKGIDHESLVEALRK 219 >gi|323441335|gb|EGA98998.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus O46] Length = 557 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 33/234 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G E + K L + HA +F G +G GK ++ F A + L + D Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +PC+ K + D + + + N VDEIR IR Sbjct: 62 ----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 102 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 103 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 162 Query: 182 LSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 163 QRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 213 >gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 630 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 42/291 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG----HVL 59 R + P + G I + L + ++ HA LF G +G GK + +A H L Sbjct: 50 RVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCHYL 109 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 ++ + P C + C + + +L D + + + N G V+EIR IR Sbjct: 110 EDGE----PCNKC--ETC----RAINEGSLSDVIEIDAASN--NG-------VEEIRDIR 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI S Sbjct: 151 DKVKYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIIS 210 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + ++ + L+Q I D + AA G + A+ IL D+ Sbjct: 211 RTQKFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSIL----DQA 266 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 +S D + E ALQ + +ELL+ +E ++K+ K+A Sbjct: 267 MSYGDDKVTY---ENALQVTGSVTNELLTT--------YVEQVIKKDTKNA 306 >gi|288817749|ref|YP_003432096.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus TK-6] gi|288787148|dbj|BAI68895.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus TK-6] gi|308751348|gb|ADO44831.1| DNA polymerase III, subunits gamma and tau [Hydrogenobacter thermophilus TK-6] Length = 483 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P + + + G E +++ L ++ A +F G +G GK T+ R L N Sbjct: 7 RKYRPKFFKDVVGQEPVKRILLNAVRLQKVSSAYIFAGSRGTGKTTVA-RLLTKSLNCIN 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C + C + + D + + + + +D+IR IR Sbjct: 66 LQESGEPCGQC--ENCL----SIDRGSFPDLIEIDAA---------SSRGIDDIRAIRDA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S T G ++V ++D + + A NALLK+LEEPP + +FIL + I+ TI SRC Sbjct: 111 VSYTPIKGRYKVYILDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKIIPTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL 201 + F LS+ + + L+ + Sbjct: 171 QRLIFTKLSQEEIVQRLKHI 190 >gi|146328966|ref|YP_001209844.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus VCS1703A] gi|146232436|gb|ABQ13414.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus VCS1703A] Length = 665 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 30/203 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G + I + LS R+HHA LF G +G+GK +L YA + Sbjct: 7 RKWRPKTFRELVGQQHITQALSYALDHDRLHHAYLFTGTRGVGKTSLARIYAKSL----- 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV--------DEI 115 + + PC + L G++ +I V DE Sbjct: 62 --NCLINGTSAQPCG---------------QCEHCLEIDQGRFPDLIEVDAASRRGIDET 104 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + L G ++V +ID V R + NALLK+LEEPP V FIL + + + Sbjct: 105 KELLDNLPYAPVKGRYKVYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPT 164 Query: 176 TIRSRCLSIKFNSLSENNLYKAL 198 T+ SRCL +++ L + L Sbjct: 165 TVLSRCLQFHLKNINPEQLRQHL 187 >gi|77408841|ref|ZP_00785568.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae COH1] gi|77172527|gb|EAO75669.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae COH1] Length = 554 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q S ++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|291288267|ref|YP_003505083.1| DNA-directed DNA polymerase [Denitrovibrio acetiphilus DSM 12809] gi|290885427|gb|ADD69127.1| DNA-directed DNA polymerase [Denitrovibrio acetiphilus DSM 12809] Length = 290 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + ++HHA +F G +G GK A V+ V M Sbjct: 2 IIGHGKEKDIFRNILTGDKLHHAYIFSGREGSGKKMFARELARAVI-----CAEQVFM-- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +PC ++A+ + H +++ + + ++ RRI ++ + +V Sbjct: 55 -EPCQCRHCKVAAASDHPDIHVL---------EESPVKIEVARRIAGDAFMSPLSARKKV 104 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + AANA+LK+LEEPP F LI+ +L TIRSRC++++F++L+ Sbjct: 105 YIIDNAHTFTKEAANAILKTLEEPPADTHFFLITDKYEQVLPTIRSRCINMRFSNLTNEE 164 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + K L +M + + A GSV+ A+ +L Sbjct: 165 VEKVLLSQGVM--NDMLPEIAAQASGSVSYAMFLL 197 >gi|311694735|gb|ADP97608.1| DNA polymerase III, delta prime subunit [marine bacterium HP15] Length = 343 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMASHALH 90 R+ HAL+ GE G+GK G +L + + P C + ++ + A H Sbjct: 26 RLPHALILVGECGVGKRAWAEAVGGLLLCDQPLGR---EAGQPIACGRCKQCELLAAASH 82 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + + Y+ P+ + ++ VD++R + F + + +V +ID D +N NAANAL Sbjct: 83 PDIRI-YA--PEKSR---MVKVDQVRALSSFAVASPQVAHHKVAIIDRADQLNINAANAL 136 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC--LSIKFNSLSENNLYKA 197 LK+LEEP V IL+ + +L TIRSRC L++ SE N + A Sbjct: 137 LKTLEEPLPDVTLILLQESGRPVLPTIRSRCQTLTVPVPGNSEANHWLA 185 >gi|227115284|ref|ZP_03828940.1| DNA polymerase III subunits gamma and tau [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 690 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFTHVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LEQ+ Sbjct: 170 CLQFHLKALDVEQIRAHLEQV 190 >gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC 11577] gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC 8290] gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC 11577] gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC 8290] Length = 630 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 42/291 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG----HVL 59 R + P + G I + L + ++ HA LF G +G GK + +A H L Sbjct: 50 RVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCHYL 109 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 ++ + P C + C + + +L D + + + N V+EIR IR Sbjct: 110 EDGE----PCNKC--ETC----RAINEGSLSDVIEIDAASNN---------GVEEIRDIR 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI S Sbjct: 151 DKVKYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIIS 210 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + ++ + L+Q I D + AA G + A+ IL D+ Sbjct: 211 RTQKFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSIL----DQA 266 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 +S D + E ALQ + +ELL+ +E ++K+ K+A Sbjct: 267 MSYGDDKVTY---ENALQVTGSVTNELLTT--------YVEQVIKKDTKNA 306 >gi|253730826|ref|ZP_04864991.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735210|ref|ZP_04869375.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus TCH130] gi|253725438|gb|EES94167.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726874|gb|EES95603.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus TCH130] Length = 557 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 33/234 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G E + K L + HA +F G +G GK ++ F A + L + D Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +PC+ K + D + + + N VDEIR IR Sbjct: 62 ----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 102 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 103 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 162 Query: 182 LSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 163 QRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 213 >gi|218779844|ref|YP_002431162.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum alkenivorans AK-01] gi|218761228|gb|ACL03694.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum alkenivorans AK-01] Length = 706 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R + P + I + L R+ HAL G +G GK T+ A + Sbjct: 5 VLARKYRPQTFDEVVAQPHITETLKNAINQERVAHALCLSGPRGTGKTTVARILAKAMNC 64 Query: 59 LQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P P+PC K++A+ D + + N +V+++R Sbjct: 65 VNGP----------TPEPCGVCASCKEIAASNAVDVFEIDGASN---------NSVEQVR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +R + G ++V +ID V +++ A NALLK+LEEPP V+FIL + S I T Sbjct: 106 ELRENVQYAPALGNYKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 I SRC F +S +++ L +L Sbjct: 166 ILSRCQRYDFKRISLDDIVGHLAKL 190 >gi|119775177|ref|YP_927917.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119767677|gb|ABM00248.1| DNA polymerase III, delta prime subunit [Shewanella amazonensis SB2B] Length = 304 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 39/260 (15%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GRM HA+L ++G+G + L + A L P C C Q+ S Sbjct: 20 AGRMPHAVLVGVDEGLGASMLVNQLAQTALCTSPNVSGPCGQCKS--C-----QLFSAGN 72 Query: 90 H-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H DF + T I +D+IR + LS TA G RV +I+ + MN +AN Sbjct: 73 HPDFYPIKAD--------GTQIKIDQIRELIARLSSTAQQGGRRVAIIEAAERMNTASAN 124 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 ALLK+LEEP L +L S+ +L T++SRC + F A Q +I W + Sbjct: 125 ALLKTLEEPGANTLILLHSNTPARLLPTLQSRCQKLAF---------VAPNQRQIAAWLA 175 Query: 209 KRDFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHIPRQEY--------ALQKMQQI 258 ++ A + V IK+ Y + ++YI ++ R+++ +++I Sbjct: 176 QQGLGTDALWCLPVVGGPIKLAEY----LQNNYISVLENIRKDWRSSLSTGHLCASLKEI 231 Query: 259 ADELLSQDQKIAFDFLIEFI 278 A++ ++ K+ + L+ ++ Sbjct: 232 AEDQITDALKVLYVELMAYL 251 >gi|307267452|ref|ZP_07548940.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter wiegelii Rt8.B1] gi|306917533|gb|EFN47819.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter wiegelii Rt8.B1] Length = 544 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 23/190 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I K L ++ HA LF G +G GK ++ F A + L+N Sbjct: 31 RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCLKN 90 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + +PC+ + + ++ D L + + N +V+++R +R Sbjct: 91 TE----------GEPCNSCEICQAINNNTTMDVLEIDAASNN---------SVNDVRELR 131 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI S Sbjct: 132 ESVIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILS 191 Query: 180 RCLSIKFNSL 189 RC F + Sbjct: 192 RCQRFDFKRI 201 >gi|226952968|ref|ZP_03823432.1| DNA polymerase III, delta prime subunit [Acinetobacter sp. ATCC 27244] gi|226836289|gb|EEH68672.1| DNA polymerase III, delta prime subunit [Acinetobacter sp. ATCC 27244] Length = 327 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 14/185 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + LS + + H LLF G++G K R+ +L ++A C+ Sbjct: 14 HQQTWELLSSRF--PEVGHGLLFYGKKGCAKNEFTARFVAWILCLNKQAQAACGECSS-- 69 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIM 135 + + S ++++++ + K + +I +IR L TG WRV++ Sbjct: 70 ----CQWLKSDTHPNYVHITTDEDNKKQNAKI-----KIEKIRDLLPFVQQTGEGWRVVV 120 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+P + +N +ANALLK+LEEP +KV+ IL++ + +TIRSR + LS+ Sbjct: 121 IEPAEALNIASANALLKTLEEPGEKVVLILLADHYLKLPATIRSRLQHFALDRLSQQEAE 180 Query: 196 KALEQ 200 K ++Q Sbjct: 181 KYIQQ 185 >gi|254507603|ref|ZP_05119736.1| DNA polymerase III, delta prime subunit [Vibrio parahaemolyticus 16] gi|219549490|gb|EED26482.1| DNA polymerase III, delta prime subunit [Vibrio parahaemolyticus 16] Length = 320 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K GK I+VD+IR+ ++ G R+ +I+P D MN +AANALLK+LEEP Sbjct: 83 KEGK---AISVDQIRQCNRQAQESSQLGGLRLFVIEPADSMNESAANALLKTLEEPSGSC 139 Query: 162 LFILISHASPTILSTIRSRC 181 +F+L++H S +L TI SRC Sbjct: 140 MFLLVTHRSNGLLPTITSRC 159 >gi|167855937|ref|ZP_02478685.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755] gi|167852931|gb|EDS24197.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755] Length = 331 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ ++ + GR HHALLF+ + G+G L ++ +L + P C Sbjct: 9 HQQTHHQITSTFLQGRGHHALLFKTDSGLGTEQLIRHFSHWLLCHSPQQSQPCGQCK--- 65 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 S + Q +H DF + L P K I +D++R I L A G V+ + Sbjct: 66 -SCLLWQSGNHP--DF----HLLAPIDDK---DIGIDQVREITAKLQQFAQQGGNAVVYL 115 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 + + AANALLK+LEEP Q V F+L + T+L+TI+SRC + ++ + ++ Sbjct: 116 AGAERLTEAAANALLKTLEEPNQNVYFLLEAPLQVTMLATIQSRCQTWLVHTPEPSQTFE 175 Query: 197 ALE 199 L+ Sbjct: 176 WLQ 178 >gi|87161398|ref|YP_493164.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194233|ref|YP_499025.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508723|ref|YP_001574382.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|87127372|gb|ABD21886.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201791|gb|ABD29601.1| DNA polymerase III, gamma and tau subunits, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367532|gb|ABX28503.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|320139233|gb|EFW31112.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus MRSA131] gi|320142047|gb|EFW33872.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus MRSA177] Length = 557 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 33/234 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G E + K L + HA +F G +G GK ++ F A + L + D Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +PC+ K + D + + + N VDEIR IR Sbjct: 62 ----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 102 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 103 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 162 Query: 182 LSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 163 QRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 213 >gi|319744863|gb|EFV97199.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus agalactiae ATCC 13813] Length = 554 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q S ++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|300721962|ref|YP_003711242.1| DNA polymerase III subunit tau and gamma [Xenorhabdus nematophila ATCC 19061] gi|297628459|emb|CBJ89024.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Xenorhabdus nematophila ATCC 19061] Length = 654 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQIFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +K P C ++ D + + + K V++ R + Sbjct: 65 ETGITKTPCGQCT------NCLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +L N + LE + +I R + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVNQISSQLEHVLHAEQIESDFRARQLLARAADGSMRDALSL 220 >gi|283784297|ref|YP_003364162.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium ICC168] gi|282947751|emb|CBG87307.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium ICC168] Length = 643 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQSFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + + LE + Sbjct: 170 CLQFHLKALDVDQIRHQLEHI 190 >gi|219850060|ref|YP_002464493.1| DNA polymerase III subunits gamma and tau [Chloroflexus aggregans DSM 9485] gi|219544319|gb|ACL26057.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aggregans DSM 9485] Length = 613 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 36/311 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G E + + L R+ HA LF G +G+GK T+ A V +PD S P C Sbjct: 18 LVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCLHPDPSARPCGTC 77 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C+ + A D + + + + +V++ R I + + + Sbjct: 78 --EMCTAIAEGRAV----DVIEMDAASH---------TSVEDAREIIERVQFRPSVARMK 122 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID ++ A NALLK+LEEPP LFIL + + +TI SRC F S Sbjct: 123 VYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVT 182 Query: 193 NLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 ++ + ++ I+ + + + AA GS+ A+ IL ++S+++ Sbjct: 183 SMAAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQ-----LASFVE------G 231 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 LQ +Q LL D LIE +L +A A + + AD + Q + Sbjct: 232 PITLQHVQS----LLGMTAAAEVDALIEALLSADLTAALRAVNAVANQGAD-LRQFARDV 286 Query: 309 VKRVHAFSMYN 319 V+R+ A + N Sbjct: 287 VERLRAVMLLN 297 >gi|323438495|gb|EGA96246.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus O11] Length = 557 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 33/234 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G E + K L + HA +F G +G GK ++ F A + L + D Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +PC+ K + D + + + N VDEIR IR Sbjct: 62 ----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 102 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 103 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 162 Query: 182 LSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 F ++S L + +E+LK + D F+ A+ G + A+ I+ Sbjct: 163 QRFDFKAIS---LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM 213 >gi|78777754|ref|YP_394069.1| DNA polymerase III subunits gamma and tau [Sulfurimonas denitrificans DSM 1251] gi|78498294|gb|ABB44834.1| DNA polymerase III, tau subunit [Sulfurimonas denitrificans DSM 1251] Length = 543 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P+ L G E I + LS + R+ HA LF G +G GK + ++ ++ Sbjct: 7 VLARKYRPINFDELIGQESISQTLSLALDANRLSHAYLFSGLRGSGKTSTARIFSKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C Q AL + ++ + + +D+IR + Sbjct: 67 EKGISHKPCGVC----------QNCILALENRHIDIVEMDGASSR-----KIDDIRDLIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 T +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 112 QTKYKPATARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 171 Query: 181 CLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 +F S++ N + L L+ + ++S+ D + + GS+ + +L Sbjct: 172 TQHFRFKSIATNKIADHLSHILNLEGIKYESEALDIIARSGSGSLRDTLTLL 223 >gi|254525893|ref|ZP_05137945.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str. MIT 9202] gi|221537317|gb|EEE39770.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str. MIT 9202] Length = 586 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G + I L + + ++ A LF G +G GK T R L F K + C Sbjct: 19 ELVGQKFISITLKEALLTKKIAPAYLFNGPRGTGK-TSSARIFAKSLNCLAFDKPTINPC 77 Query: 73 NPDPCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C +Q+ D + + + N TG V+ IR I W Sbjct: 78 ----CKCDLCRQITDGNALDIIEIDAASN--TG-------VENIREIIERARFAPTQARW 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC F +S Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISP 184 Query: 192 NNLYKALEQL 201 ++++ L ++ Sbjct: 185 GDIFQHLTEI 194 >gi|218296188|ref|ZP_03496944.1| DNA polymerase III, subunits gamma and tau [Thermus aquaticus Y51MC23] gi|218243260|gb|EED09790.1| DNA polymerase III, subunits gamma and tau [Thermus aquaticus Y51MC23] Length = 500 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P+ Q + G E +++ L + GR+ A LF G +G+GK T A V Sbjct: 6 RTFRPLTFQEVVGQEHVKEPLLRAIREGRLAQAYLFSGPRGVGKTTTARLLAMAV--GCQ 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K P +C P + + A D + + + N +V+++R +R + Sbjct: 64 GQKRPCGVC------PHCQAVQKGAHPDVVEIDAASN---------NSVEDVRELRERIL 108 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L T +V ++D ++++A NALLK+LEEPP VLF+ + + TI SR Sbjct: 109 LAPLTAPKKVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRVQH 168 Query: 184 IKFNSLSENNL 194 +F L E + Sbjct: 169 YRFRRLREEEI 179 >gi|294650550|ref|ZP_06727907.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292823547|gb|EFF82393.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 327 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 14/185 (7%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + LS + + H LLF G++G K R+ +L ++A C+ Sbjct: 14 HQQTWELLSSRF--PEVGHGLLFYGKKGCAKNEFTARFVAWILCLNKQAQAACGECSS-- 69 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIM 135 + + S ++++++ + K + +I +IR L TG WRV++ Sbjct: 70 ----CQWLKSDTHPNYVHITTDEDNKKQNAKI-----KIEKIRDLLPFVQQTGEGWRVVV 120 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+P + +N +ANALLK+LEEP +KV+ IL++ + +TIRSR + LS+ Sbjct: 121 IEPAEALNIASANALLKTLEEPGEKVVLILLADHYLKLPATIRSRLQHFALDRLSQQEAE 180 Query: 196 KALEQ 200 K ++Q Sbjct: 181 KYIQQ 185 >gi|226954137|ref|ZP_03824601.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244] gi|226835178|gb|EEH67561.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244] Length = 661 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVVSR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + + L Sbjct: 169 CLQFTLRPLAVDEITEHL 186 >gi|301155187|emb|CBW14651.1| DNA polymerase III, delta prime subunit [Haemophilus parainfluenzae T3T1] Length = 326 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 16/159 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 +SQ + G HHALL + +QG+G L ++ Q PD AP C+ Sbjct: 15 ISQTFSEGLGHHALLIKADQGLGAEGLFEALTKRIMCQTPD--NAPCGHCHA------CH 66 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 MA+ + DF + L + GK I VD++R I +S A +++ I + + Sbjct: 67 LMAAQSHPDF----HVLASQEGK---DIGVDQVRAINEVVSQHAQQNGNKLVYIQDAERL 119 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEP F+L + S ++L+TI SRC Sbjct: 120 TEAAANALLKTLEEPRPNTYFLLQTEPSSSLLATIYSRC 158 >gi|288928509|ref|ZP_06422356.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331343|gb|EFC69927.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 608 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 20/190 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + PV + G + L SG++ HA LF G +G+GK T F A + L Sbjct: 9 RKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLTP 68 Query: 62 PDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +A CN + C F Q + ++ L + N +T++ D+ R Sbjct: 69 TEMGEA----CNHCESCQAFNDQRS----YNIFELDAASNNSVENIKTLM--DQTR---- 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SR Sbjct: 115 ---IPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSR 171 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 172 CQIYDFERMT 181 >gi|312867346|ref|ZP_07727555.1| DNA polymerase III, subunit gamma and tau [Streptococcus parasanguinis F0405] gi|311097047|gb|EFQ55282.1| DNA polymerase III, subunit gamma and tau [Streptococcus parasanguinis F0405] Length = 558 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNDCYICESITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ LE L G + D V+I A G + A+ IL Sbjct: 179 LPDIIHHLESILATEGIVYEADAVQIIARRAEGGMRDALSIL 220 >gi|301164833|emb|CBW24393.1| putative DNA polymerase III delta prime subunit [Bacteroides fragilis 638R] Length = 369 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 24/241 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPV-- 69 + G E+ + L Q GR+ HA LF G +G+GK L YA ++ D V Sbjct: 6 VIGQEEAKHRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSDTDACGVCP 65 Query: 70 ------RMCNPDP--CSPFVKQMASHAL----------HDFLYLSYSLNPKTGK-WRTVI 110 ++ +PD P VK S + + +++ LN + + VI Sbjct: 66 SCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAENAQAVI 125 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 E I LSL ++ G +++ ++ + M + AN LLK LEEPP+K +F+L+S A Sbjct: 126 YTKESDEIMKKLSLKSSEGGFKITLLWLPEKMQQACANKLLKLLEEPPEKTIFLLVSEAP 185 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 IL TI SR + E + +AL Q K + + A G+ +A++ +H Sbjct: 186 DLILQTILSRTQRFNLRKIEEECMAEAL-QSKYGVQQATSISIAHLANGNFIKALETIHL 244 Query: 231 D 231 + Sbjct: 245 N 245 >gi|299769631|ref|YP_003731657.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1] gi|298699719|gb|ADI90284.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1] Length = 717 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + + L Sbjct: 169 CLQFTLRPLAVDEITRHL 186 >gi|146311270|ref|YP_001176344.1| DNA polymerase III subunit delta' [Enterobacter sp. 638] gi|145318146|gb|ABP60293.1| DNA polymerase III, delta prime subunit [Enterobacter sp. 638] Length = 334 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 19/207 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHALL + G+G L + ++ Q P+ K+ R C + Q Sbjct: 18 YQAGRGHHALLIQALPGMGDDALIYALTRFLMCQKPEGHKSCGKCRGCQ-------LMQA 70 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +H D+ Y+L P+ GK + + +D +R + L A +V+ + + Sbjct: 71 GTHP--DY----YTLEPEKGK--SSLGIDAVREVSEKLYEHARLSGAKVVWLKDAALLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 AANALLK+LEEPP+K F + +L+T+RSRC + SE+ LE+ + Sbjct: 123 AAANALLKTLEEPPEKTWFFMSCREPGRLLATLRSRCRLHHLAAPSESWALTWLEREVTV 182 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYD 231 D+ +++++ G+ A A+++L + Sbjct: 183 SQDAALTALRLSS-GAPAAALELLQKE 208 >gi|45659289|ref|YP_003375.1| DNA polymerase III subunit gamma [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828515|ref|NP_714511.2| DNA polymerase III subunit gamma [Leptospira interrogans serovar Lai str. 56601] gi|45602535|gb|AAS72012.1| DNA polymerase III gamma subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386368|gb|AAN51529.2| DNA polymerase III gamma subunit [Leptospira interrogans serovar Lai str. 56601] Length = 479 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 17/153 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 SG++ HA +F G +G+GK T+ A + QNP P CN CS + ++S Sbjct: 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCQNP-IDNEPCNECNS--CSEITRGISS-- 90 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D L + + N ++ IR +R + G ++V +ID V + + N Sbjct: 91 --DVLEIDAASNR---------GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFN 139 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEPP ++F+L + I TI SRC Sbjct: 140 ALLKTLEEPPAHIVFVLATTEFHKIPETILSRC 172 >gi|261253404|ref|ZP_05945977.1| DNA polymerase III delta prime subunit [Vibrio orientalis CIP 102891] gi|260936795|gb|EEX92784.1| DNA polymerase III delta prime subunit [Vibrio orientalis CIP 102891] Length = 321 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 23/155 (14%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK--QMASHA 88 R +A L E+G+G +TL ++ V+ QN P C F Q+ S A Sbjct: 24 RFSNASLLVAEEGMGASTLVDAFSQAVICQN-----YPAEACG------FCHGCQLMSSA 72 Query: 89 LH-DFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H DF + + P K GK ITV++IR+ ++ R+ +I+P + MN +A Sbjct: 73 SHPDF----HVIKPEKEGK---SITVEQIRQCNRIAQESSQLSGVRLFVIEPAEAMNESA 125 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEP +F+L++H + +L TI SRC Sbjct: 126 ANALLKTLEEPSSTCMFLLVAHRANALLPTITSRC 160 >gi|225848978|ref|YP_002729142.1| DNA polymerase III subunits gamma/tau [Sulfurihydrogenibium azorense Az-Fu1] gi|225643961|gb|ACN99011.1| DNA polymerase III subunit gamma/tau [Sulfurihydrogenibium azorense Az-Fu1] Length = 496 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P + + G + + K L R+ HA +F G +G+GK T+ R L N Sbjct: 8 RKYRPKSFKEVIGQDFVVKTLKNAVKLNRVSHAYIFAGPRGVGKTTIA-RILAKTLNCLN 66 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P DF P C + C ++ + D Y ++ + + +D+IR IR Sbjct: 67 PQDFE--PCNKC--ENCL----EIEKGSFPDM----YEIDAASNRG-----IDDIRTIRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +++ +ID + + A NALLK+LEEPP K +FIL + I TI+SR Sbjct: 110 NVNYQPIKGKYKIYIIDEAHMLTKEAFNALLKTLEEPPPKNIFILATTELYKIPETIKSR 169 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 C F +++ L + LE KI D D + G + + +L Sbjct: 170 CQVFLFKPPTKSQIKAYLLRILENEKIPYEDQAVDLLSQELEGGMRDSASLL 221 >gi|299067243|emb|CBJ38440.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CMR15] Length = 763 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 45/283 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 36 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 95 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 96 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASN--------- 134 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 135 RGVDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 194 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVAR 223 I T+ SRCL + ++ L+ +I+G + + + AA GS+ Sbjct: 195 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLD--RILGEEGIAHEPNALRLLASAAQGSMRD 252 Query: 224 AIKI----LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADE 261 A+ + + Y ++ + + ++ Q Y ++ + +ADE Sbjct: 253 ALSLTDQAIAYSAGEVSEAAVRGMLGAIDQSYLVRVLDALADE 295 >gi|294650252|ref|ZP_06727622.1| DNA polymerase III, tau and gamma subunits [Acinetobacter haemolyticus ATCC 19194] gi|292823856|gb|EFF82689.1| DNA polymerase III, tau and gamma subunits [Acinetobacter haemolyticus ATCC 19194] Length = 682 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCAT--C----KAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVVSR 168 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGW-DSKRDFV-KIA--AYGSVARAIKI 227 CL L+ + + + L + + D+ +D + +IA A GS+ A+ + Sbjct: 169 CLQFTLRPLAVDEITEHLTAILVKEHIDADQDAIWQIAESAQGSLRDALSL 219 >gi|83588901|ref|YP_428910.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica ATCC 39073] gi|83571815|gb|ABC18367.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica ATCC 39073] Length = 589 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L +GR+ HA LF G +G GK + +L Sbjct: 9 RQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTS-----TAKILARAI 63 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 AP R P + C+ + +A ++L D L + + N +DEIR + + Sbjct: 64 NCLAP-REGEPCNECANCRRILAGNSL-DVLEMDAASN---------RGIDEIRNLIEKI 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L G ++V +ID V + + A NALLK+LEEPP +FIL + +L TI SRC Sbjct: 113 PLGPVEGRYKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQ 172 Query: 183 SIKFNSLSENNLYKALEQL 201 F+ L+ + L+++ Sbjct: 173 RFDFHPLTVQAIAGRLQEV 191 >gi|150387937|ref|YP_001317986.1| DNA polymerase III, delta prime subunit [Alkaliphilus metalliredigens QYMF] gi|149947799|gb|ABR46327.1| DNA polymerase III, delta prime subunit [Alkaliphilus metalliredigens QYMF] Length = 329 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 19/219 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G + K L Q + H +FEG +G+GK + F A L P Sbjct: 4 ENIVGQAHVIKLLKQSIKQNTVGHGYIFEGIEGLGKHLVAFELA-KALCCTGTGDQPCNQ 62 Query: 72 CNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 CN C SH H D +++ TG+ I ++ IR ++ Sbjct: 63 CNS--CKKL-----SHQNHPDVIWI-------TGEGS--IKINTIRDLQKDTQQKPYESR 106 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +I+ + M A NALLK+LEEPP V IL++ S ++L TI SRC IKF + Sbjct: 107 KKVYIIEKAEKMTVQAQNALLKTLEEPPSYVTLILLTANSHSLLPTITSRCQIIKFQPVP 166 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + L K + + K + + G V +A+K+L Sbjct: 167 LDVIQAFLMLEKNVDLE-KAKLMATLSNGVVGKALKLLE 204 >gi|254292085|ref|ZP_04962860.1| DNA polymerase III, delta prime subunit [Vibrio cholerae AM-19226] gi|150421991|gb|EDN13963.1| DNA polymerase III, delta prime subunit [Vibrio cholerae AM-19226] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGLGAESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|78485064|ref|YP_390989.1| DNA-directed DNA polymerase [Thiomicrospira crunogena XCL-2] gi|78363350|gb|ABB41315.1| DNA polymerase III, delta prime subunit [Thiomicrospira crunogena XCL-2] Length = 325 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPFVKQMASHA 88 SG + L G +GIG + A +L + ++ C N C F + A+H Sbjct: 17 SGHLGQGYLLSGAEGIGLSEFAMSMAEGLLCQTN----ALQGCQNCVHCHQFAQ--ATHP 70 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF L+ + K I++D+IR + + T++ G ++V +I+ V+ +N +A N Sbjct: 71 --DFFQLTVLEDKKE------ISIDQIRALTDKIYTTSHQGGYKVALIEQVELLNVSAFN 122 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ALLK+LEEPP K + IL S+ + + +TI SRC I F S L+Q Sbjct: 123 ALLKTLEEPPAKTILILTSYQTSLLPATIISRCRKIAFASPPREEALAWLQQ 174 >gi|33592641|ref|NP_880285.1| DNA polymerase III subunits gamma and tau [Bordetella pertussis Tohama I] gi|33572287|emb|CAE41839.1| DNA polymerase III subunit Tau [Bordetella pertussis Tohama I] Length = 696 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA--CT----EIDAGRFVDYLELDAASNRG---------VEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + + L+ + Sbjct: 170 CLQFNLKQMPPDAIVGHLQAV 190 >gi|94311067|ref|YP_584277.1| DNA polymerase III subunits gamma and tau [Cupriavidus metallidurans CH34] gi|93354919|gb|ABF09008.1| DNA polymerase III tau/gamma subunit [Cupriavidus metallidurans CH34] Length = 795 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 26/224 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPD----FSKA 67 L G E + + L+ R+HHA LF G +G+GK TL R L PD + Sbjct: 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLS-RILAKALNCTGPDGNGGITAQ 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C C+ ++ S D++ + + N VDE+ ++ Sbjct: 77 PCGQCKA--CT----EIDSGRFVDYIEMDAASN---------RGVDEMAQLLDKAIYAPT 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SRCL Sbjct: 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 181 Query: 188 SLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + ++ L+ Q I S + AA+GS+ A+ + Sbjct: 182 QMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSL 225 >gi|307693852|ref|ZP_07636089.1| DNA polymerase III tau and gamma subunits [Ruminococcaceae bacterium D16] Length = 312 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G+ ++ LSQ + HA + G G G+ TLG A ++ + P C Sbjct: 6 LAGNRRLKAQLSQQEGGRGLSHAYIISGPVGSGRHTLGGLLAQAMVCTAPEHQRPCGHC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 P ++ D +++ + K I VD++R +R + N G +V Sbjct: 65 -----PQCRKAQGGIHPDIAWIAGAGEGKP------INVDQVRALRSDAYIRPNEGERKV 113 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++ D MN +A NA+LK LEE P F+L+S + IL T+RSRC ++ + ++ + Sbjct: 114 YILEGADRMNASAQNAMLKLLEEGPAYAAFLLLSENAGGILETVRSRCETLTLDPVAPDE 173 Query: 194 LYKALE 199 L+ Sbjct: 174 CLSWLQ 179 >gi|258424489|ref|ZP_05687366.1| DNA polymerase III [Staphylococcus aureus A9635] gi|257845084|gb|EEV69121.1| DNA polymerase III [Staphylococcus aureus A9635] Length = 565 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E + K L + HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 TD----------GEPCNECHICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKIL 228 R F ++S L + +E+LK + + F+ A+ G + A+ I+ Sbjct: 169 RAQRFDFKAIS---LDQIVERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIM 221 >gi|326563685|gb|EGE13937.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 103P14B1] gi|326573294|gb|EGE23262.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 101P30B1] gi|326575807|gb|EGE25730.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis CO72] Length = 748 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + A GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSL 222 >gi|183600059|ref|ZP_02961552.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827] gi|188022344|gb|EDU60384.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827] Length = 643 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGKCT------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL---KIMGWDSK-RDFVKIAAYGSVARAIKI 227 CL +L + + + LE + + + D++ R + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVSQISEQLEHILTAENIEHDTRARQLISRAADGSLRDALSL 220 >gi|327484550|gb|AEA78957.1| DNA polymerase III delta prime subunit [Vibrio cholerae LMA3894-4] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGVGAESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HLVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|22536992|ref|NP_687843.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae 2603V/R] gi|25010901|ref|NP_735296.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae NEM316] gi|76787118|ref|YP_329574.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae A909] gi|76798944|ref|ZP_00781147.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21] gi|77405538|ref|ZP_00782629.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae H36B] gi|77410726|ref|ZP_00787085.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae CJB111] gi|77413110|ref|ZP_00789310.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 515] gi|22533847|gb|AAM99715.1|AE014229_16 DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 2603V/R] gi|23095280|emb|CAD46490.1| Unknown [Streptococcus agalactiae NEM316] gi|76562175|gb|ABA44759.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae A909] gi|76585711|gb|EAO62266.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21] gi|77160811|gb|EAO71922.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 515] gi|77163262|gb|EAO74214.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae CJB111] gi|77175845|gb|EAO78623.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae H36B] Length = 554 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q S ++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QI 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNHCDICRDITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177 >gi|331701734|ref|YP_004398693.1| DNA polymerase III subunits gamma and tau [Lactobacillus buchneri NRRL B-30929] gi|329129077|gb|AEB73630.1| DNA polymerase III, subunits gamma and tau [Lactobacillus buchneri NRRL B-30929] Length = 600 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG----HVL 59 R + P + G I + L + + HA LF G +G GK + +A H L Sbjct: 8 RVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCHYL 67 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 ++ + P C + C K + +L+D + + + N G V+EIR IR Sbjct: 68 KDGE----PCNQC--ETC----KAINEGSLNDVIEIDAASN--NG-------VEEIRDIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI S Sbjct: 109 DKAKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIIS 168 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 R F + ++ + L+Q K+ D + AA G + A+ IL Sbjct: 169 RTQKFDFKRIKPQDILERMKYILDQKKVEYDDKALKLIAKAAEGGMRDALSIL 221 >gi|238759223|ref|ZP_04620390.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236] gi|238702510|gb|EEP95060.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236] Length = 655 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 127/298 (42%), Gaps = 31/298 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLLSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP +C +++ D + + + K V++ R + Sbjct: 65 ETGITAAPCGVCA------NCREIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL ++ + LE++ ++ S ARA+++L D S Sbjct: 170 CLQFHLKAIDVEQIRALLEKI-----------LQAEQITSDARALQLLARAAD---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 D + + Q A+ + QI +SQ + D + E SA A + Q+E+A Sbjct: 216 DALSLADQAIAMGQ-GQITTSTVSQ-MLGSLDDEQPLAIIEALVSADGAKVMAQVEQA 271 >gi|197334811|ref|YP_002156506.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11] gi|197316301|gb|ACH65748.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11] Length = 709 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ K++ D L + + K V++ R + Sbjct: 65 EEGITSTPCGVCS------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +S + +++ L+ Sbjct: 170 CLQFHLKHISVDQIHEQLD 188 >gi|146302257|ref|YP_001196848.1| DNA polymerase III, subunits gamma and tau [Flavobacterium johnsoniae UW101] gi|146156675|gb|ABQ07529.1| DNA polymerase III, subunits gamma and tau [Flavobacterium johnsoniae UW101] Length = 361 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L S + ALLF G +G+GK T R + P Sbjct: 9 RKYRPQTFKDVVGQKAITNTLLNAIESNHLASALLFTGPRGVGKTTCA-RILARKINQPG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + DP DF + + L+ + +VD+IR + + Sbjct: 68 YD---------DPT------------EDFAFNVFELDAASNN-----SVDDIRNLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V ++ A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 102 IPPQTGQYKVYIIDEVHMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKILPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + +L E I D + A G++ A+ I D+++S Sbjct: 162 FDFKRITVKDAKEHLADVAESQGINFEDDALHIIAQKADGAMRDALSIF----DRVVS 215 >gi|167038580|ref|YP_001666158.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116975|ref|YP_004187134.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857414|gb|ABY95822.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930066|gb|ADV80751.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 518 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 27/234 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I + L ++ HA LF G +G GK ++ F A + L N Sbjct: 7 RKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNN 66 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ + + ++ D L + + N +V+++R +R Sbjct: 67 KD----------GEPCNSCEICQAINNNTTMDVLEIDAASNN---------SVNDVRELR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI S Sbjct: 108 ESVIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILS 167 Query: 180 RCLSIKF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 RC F L NL + I + + I GS+ AI +L Sbjct: 168 RCQRFDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLE 221 >gi|254483665|ref|ZP_05096885.1| hypothetical protein GPB2148_568 [marine gamma proteobacterium HTCC2148] gi|214036076|gb|EEB76763.1| hypothetical protein GPB2148_568 [marine gamma proteobacterium HTCC2148] Length = 329 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-SPFVKQ 83 +Q G + HAL+ G G GK+ L A + AP N C S + Sbjct: 24 NQQLADGNLPHALVLAGLPGSGKSRLALALARLL-----LCHAPNGGLNCGKCHSCEMSA 78 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH DF +L + I +D++R + F + TA+ G +++++ P D MN Sbjct: 79 AGSHG--DFRWLQPEEKSR------AIKIDQVREVVTFTTKTASFGDRKIVVLAPADAMN 130 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 NAAN LLKSLEEP IL+ + +T+RSRC IK + S ++ L+Q Sbjct: 131 TNAANGLLKSLEEPSPGTFLILVCDQLHGLPATVRSRCQLIKVPAPSLDSSRAWLDQ 187 >gi|121997041|ref|YP_001001828.1| DNA polymerase III subunits gamma and tau [Halorhodospira halophila SL1] gi|121588446|gb|ABM61026.1| DNA polymerase III, subunits gamma and tau [Halorhodospira halophila SL1] Length = 554 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 8 RKWRPRRFEDVAGQEHVLRALANALADGRLHHAYLFSGTRGVGKTTVARILAKCLNCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +++ + D + + + K V++ R + + Sbjct: 68 ITAEPCGTC--DSC----RELDAGRFVDLIEVDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SRCL Sbjct: 113 YAPTRGRFKIYLIDEVHMLSSHSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQ 172 Query: 184 IKFNSLS 190 LS Sbjct: 173 FHLRRLS 179 >gi|193213861|ref|YP_001995060.1| DNA polymerase III gamma and tau subunits [Chloroherpeton thalassium ATCC 35110] gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton thalassium ATCC 35110] Length = 403 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 7/190 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E + + L +GR+ H +F G +G+GK T A + Sbjct: 5 VIARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGYIFSGSRGVGKTTAARILAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 R +PC + DF S SLN + +VD+IR +R Sbjct: 65 EKILKDEAYRETVSEPCGE------CESCRDFDAGS-SLNISEFDAASNNSVDDIRALRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID ++ A NA LK+LEEPP +FI + + TI SR Sbjct: 118 NVRYAPQKGRYKVYIIDEFHMLSNAAFNAFLKTLEEPPSHAVFIFATTELNKVPPTIASR 177 Query: 181 CLSIKFNSLS 190 C F +S Sbjct: 178 CQKFNFKRIS 187 >gi|91204862|ref|YP_537217.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii RML369-C] gi|91068406|gb|ABE04128.1| DNA polymerase III gamma and tau chains [Rickettsia bellii RML369-C] Length = 508 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSSFAELHGQEVLVKVLSYTILNNRLAGGYLLTGIRGVGKTTSARIIAKAV----N 70 Query: 64 FSKAPVRMCNPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S N C V ++ +H D + + + KT +VD+IRRI Sbjct: 71 CSALITEDNNIKTCEQCVNCVSFNNHNHSDIIEIDAA--SKT-------SVDDIRRIIES 121 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ +ID V +++ A NALLK+LEEPP V+FI + I +TI SRC Sbjct: 122 AEYKPLQGKYKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRC 181 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + +++ AY GS A+ IL Sbjct: 182 QRYDLKRLSFEEIFKLLEYIVKEENLKTDIEALRVIAYKSDGSARDAVSIL 232 >gi|1527142|gb|AAC97558.1| DNA polymerase III gamma subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 430 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|319778426|ref|YP_004129339.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis MCE9] gi|317108450|gb|ADU91196.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis MCE9] Length = 380 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFSSLVGQDHVVKALTHALDTERLHHAWLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C+ Q+ D++ + N +I + Y Sbjct: 65 ETGITSKPCGVCRA--CT----QIDEGRFVDYMEFDAASNRGVEDMAALI-----EQAIY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S+ G ++V ID V ++ A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 114 APSV----GRFKVYTIDEVHMLSGTAFNAMLKTLEEPPPHVKFILATTDPQKIPITVVSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL ++S ++L LE+ + S + AA GS+ A+ I Sbjct: 170 CLQFNLKNMSPEQIVSHLEYILEKESVSYEKSALKLLAQAASGSMRDALSI 220 >gi|291537075|emb|CBL10187.1| DNA polymerase III, gamma/tau subunits [Roseburia intestinalis M50/1] Length = 349 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 25/246 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + GHE I + L ++ HA + G GK + +A LQ +K + Sbjct: 7 IVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFA-QTLQCEAVNKKLEELAG 65 Query: 73 -----------NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RI 118 +PC KQ A D +Y+S+ P T I+VD+IR ++ Sbjct: 66 ETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHE-KPNT------ISVDDIRTQL 118 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++ ++D + MN+ A NALLK++EEPP + +L++ + + L TI Sbjct: 119 NNDIVIKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTTNAESFLPTIL 178 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-DCDKIIS 237 SRC+++ ++ + + K L D + D A G+V +AI++ D +++ + Sbjct: 179 SRCVTLNLKAVPDGKIKKFL-MAHYQIPDYQADVCVAFAQGNVGKAIQLAASDDFNELKA 237 Query: 238 SYIDLI 243 S I LI Sbjct: 238 SAIQLI 243 >gi|94500851|ref|ZP_01307377.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65] gi|94426970|gb|EAT11952.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65] Length = 658 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + L G E + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQFFKDLVGQEHVMRALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++++ D + + + K V++ R I Sbjct: 65 EQGISSEPCGTCQ------SCQEISQGRFVDLIEVDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +++ + L+ + Sbjct: 170 CLQFSLKNMTPERIVGYLQNV 190 >gi|226309665|ref|YP_002769559.1| DNA polymerase III delta' subunit [Brevibacillus brevis NBRC 100599] gi|226092613|dbj|BAH41055.1| DNA polymerase III delta' subunit [Brevibacillus brevis NBRC 100599] Length = 326 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 19/180 (10%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 ++ LS + R+ HA L G +G GK + A + + D C Sbjct: 13 QELLSHSLRNERLAHAYLLAGPKGSGKKQMALHLAKSLFCSER---------EADACGAC 63 Query: 81 V--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 V +++ D L+++ P I +D+IR ++ +++ A +V +I+ Sbjct: 64 VTCRRIDGGNHPDVLFIT----PDGAS----IKIDQIRSLQKEMAMRAVESSRKVYIIEH 115 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 VD M AAN+LLK LEEPP VL +L++ S IL TI SRC ++F+ LS ++ + L Sbjct: 116 VDKMTTQAANSLLKFLEEPPAGVLALLLTEHSHAILPTILSRCQIVQFSPLSAESIAEKL 175 >gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] Length = 473 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 19/230 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + ++K + + H +F G +G GK TL R L + Sbjct: 6 RKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLA-RILAKSLNCEN 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + V CN C +++ D + L + N +DEIRRIR + Sbjct: 65 --REGVEPCNR--CRS-CREIDEGTFMDVIELDAASNR---------GIDEIRRIRDAVG 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAIKILH 229 +F ++ + + K L+++ + G D + F+ A G + A+ +L Sbjct: 171 FEFRNIPDELIEKRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTMLE 220 >gi|239815313|ref|YP_002944223.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus S110] gi|239801890|gb|ACS18957.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus S110] Length = 620 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 20/203 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R F P + G + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C K + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQ------ACKDIDSGRFVDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKAL 198 T+ SRCL ++ + + L Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHL 192 >gi|54308210|ref|YP_129230.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum SS9] gi|46912638|emb|CAG19428.1| Hypothetical DNA polymerase III, subunits gamma and tau [Photobacterium profundum SS9] Length = 753 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 43/320 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + LS R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPYQFSDVVGQSHVLTALSNALTHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGITATPCGQCG------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL L + + QL + DF +A+ +L + S Sbjct: 170 CLQFHLKHLDNDQIQS---QLSNVLTQENVDFEP--------KALSLLSRAAE---GSMR 215 Query: 241 DLIHIPRQEYALQKMQQIADEL------LSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 D + + Q AL Q AD + L+ DQ + FL+E + +A G Sbjct: 216 DALSLTDQAIALGNGQVHADSVSMMLGTLNTDQAL---FLLEAV-----SGGQANTAMGG 267 Query: 295 LEEADQIAQIYFSLVKRVHA 314 LEE + + SL++ + A Sbjct: 268 LEELASVGVEWDSLLRELAA 287 >gi|296102883|ref|YP_003613029.1| DNA polymerase III subunit delta' [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057342|gb|ADF62080.1| DNA polymerase III subunit delta' [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 334 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHALL + G+G+ L + ++ Q P+ K+ R C + Q Sbjct: 18 YQAGRGHHALLIQALPGMGEDALIYAITRFLMCQQPEGHKSCGKCRGCQ-------LMQA 70 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +H D+ Y+L P+ GK + + +D +R + L A G +V+ + + Sbjct: 71 GTHP--DY----YTLEPEKGK--SALGIDAVREVSEKLYEHARLGGAKVVWLKDAALLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEPP+K F L +L+T+RSRC Sbjct: 123 AAANALLKTLEEPPEKTWFFLSCRDPGRLLATLRSRC 159 >gi|157826506|ref|YP_001495570.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii OSU 85-389] gi|157801810|gb|ABV78533.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii OSU 85-389] Length = 508 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSSFAELHGQEVLVKVLSYTILNNRLAGGYLLTGIRGVGKTTSARIIAKAV----N 70 Query: 64 FSKAPVRMCNPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S N C V ++ +H D + + + KT +VD+IRRI Sbjct: 71 CSALITEDNNIKTCEQCVNCVSFNNHNHSDIIEIDAA--SKT-------SVDDIRRIIES 121 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ +ID V +++ A NALLK+LEEPP V+FI + I +TI SRC Sbjct: 122 AEYKPLQGKYKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRC 181 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + +++ AY GS A+ IL Sbjct: 182 QRYDLKRLSFEEIFKLLEYIVKEENLKTDIEALRVIAYKSDGSARDAVSIL 232 >gi|325267530|ref|ZP_08134183.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans ATCC 33394] gi|324981055|gb|EGC16714.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans ATCC 33394] Length = 697 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L GR+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + D L + + N TG +D IR + Sbjct: 66 ENAQHGEPCGQCQ------SCRDIDAGRFVDLLEIDAASN--TG-------IDNIREVLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 111 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 170 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +L+ ++L L+ KI+ + + AA GS+ A+ +L Sbjct: 171 CLQFVLRNLTPQQVADHLTHVLKTEKIVYEPAALALLGRAAQGSMRDALSLL 222 >gi|312882074|ref|ZP_07741824.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus ATCC BAA-2122] gi|309370210|gb|EFP97712.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus ATCC BAA-2122] Length = 671 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + L R+HHA L G +G+GK T+G +A + Sbjct: 8 RKWRPTQFNQVVGQRHVLTALENALAQNRLHHAYLLSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ +++ D L + + K V++ R + + Sbjct: 68 ITAQPCGQCS------TCQEIDQGRFVDLLEIDAASRTK---------VEDTRDLLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SRCL Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 + + + L Sbjct: 173 FDLKPIESEEIQQQL 187 >gi|326560228|gb|EGE10616.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 7169] Length = 748 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 35/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--F 121 + P +C D C ++ G++ +I +D R + Sbjct: 70 MTSQPCGVC--DTC---------------------ISIDQGRFLDLIEIDAASRTKVEDT 106 Query: 122 LSLTANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 L N G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + Sbjct: 107 RELLENVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPI 166 Query: 176 TIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 TI SRCL L + ++L K L+ KI ++ + A GSV A+ + Sbjct: 167 TIISRCLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSL 222 >gi|126652951|ref|ZP_01725093.1| DnaX [Bacillus sp. B14905] gi|126590281|gb|EAZ84403.1| DnaX [Bacillus sp. B14905] Length = 595 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + + Sbjct: 8 RVYRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKAL----N 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMA----SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 AP + +PC+ ++ SH D + + N + V+EIR I Sbjct: 64 CEHAPAK----EPCNECATCISITDGSHP--DVIEFDAASNSR---------VEEIRDII 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ +A NALLK+LEEPP +FIL + + +TI S Sbjct: 109 EKVRFAPASSRYKVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIIS 168 Query: 180 RCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F LS N++ + LE +++ + + +A G + A+ +L D++ Sbjct: 169 RCQRFDFKRLSTNDIIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLL----DQV 224 Query: 236 IS 237 +S Sbjct: 225 VS 226 >gi|15606671|ref|NP_214051.1| hypothetical protein aq_1526 [Aquifex aeolicus VF5] gi|2983903|gb|AAC07454.1| hypothetical protein aq_1526 [Aquifex aeolicus VF5] Length = 305 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 40/286 (13%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMC-------- 72 FL + + + LLF G++G GK F +A +L +N + C Sbjct: 5 FLEKLQKTLHIPGGLLFYGKEGSGKTKTAFEFAKGILCKENVPWGCGSCPSCKHVNELEE 64 Query: 73 --------------NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + D FV M H DF+ + S G + I +++IR + Sbjct: 65 AFFKGEIEDFKVYKDKDGKKHFVYLMGEHP--DFVVIIPS-----GHY---IKIEQIREV 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + F + +VI+ID M AANALLK LEEPP FIL ++ IL TI Sbjct: 115 KNFAYVKPALSRRKVIIIDDAHAMTSQAANALLKVLEEPPADTTFILTTNRRSAILPTIL 174 Query: 179 SRCLSIKFNSLSENNLY---KALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SR ++F S + K E++ K+ G KR + + + + L + K Sbjct: 175 SRTFQVEFKGFSVKEVMEIAKVDEEIAKLSGGSLKRAILLKENKDILNKVKEFLENEPLK 234 Query: 235 I--ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + ++S + +Q+ L+ M+++ + L++++K + +L++ I Sbjct: 235 VYKLASEFEKWEPEKQKLFLEIMEELVSQKLTEEKKDNYTYLLDTI 280 >gi|268317802|ref|YP_003291521.1| DNA polymerase III, delta prime subunit [Rhodothermus marinus DSM 4252] gi|262335336|gb|ACY49133.1| DNA polymerase III, delta prime subunit [Rhodothermus marinus DSM 4252] Length = 391 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 103/252 (40%), Gaps = 44/252 (17%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G + + + L + R+ HA LF G G GK +A LQ P C Sbjct: 5 RIIGQKRVVEALRRALAQQRVAHAYLFYGPDGTGKRAAALMFA-QALQCEQGGSDPCGQC 63 Query: 73 NPDPCS-------PFVKQMASH---ALHDFLYLSYSLNPKTGKWRTVITVDEIRR----- 117 P C+ P V+ M H A D LY + TVD IRR Sbjct: 64 VP--CTKVQRLIHPDVQVMLPHPSDADPDDLYERL----QRLAAEPYATVDYIRRPVLDD 117 Query: 118 -------------------IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 +R +S G ++V ++ D M AANA LK LEEP Sbjct: 118 PTRASNKQAFYSVARINESLRRSVSFKPLEGRYKVAILIDADRMRVEAANAFLKLLEEPG 177 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV-KIAA 217 + +FIL + +L T+RSRC ++F+ L + +AL + + G D R V A Sbjct: 178 PQTVFILTTSRPDHLLPTVRSRCQHLRFDPLPAEAIAQALVERE--GVDEARAMVLARMA 235 Query: 218 YGSVARAIKILH 229 GS +RA+ +L Sbjct: 236 DGSYSRALDLLE 247 >gi|206576456|ref|YP_002240028.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342] gi|206565514|gb|ACI07290.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342] Length = 635 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|300704438|ref|YP_003746041.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] gi|299072102|emb|CBJ43434.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] Length = 735 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 34/216 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 65 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASN--------- 103 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 104 RGVDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 I T+ SRCL + ++ L+ +I+G Sbjct: 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLD--RILG 197 >gi|227549700|ref|ZP_03979749.1| DNA polymerase III subunit delta [Corynebacterium lipophiloflavum DSM 44291] gi|227078196|gb|EEI16159.1| DNA polymerase III subunit delta [Corynebacterium lipophiloflavum DSM 44291] Length = 399 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 19/171 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGH-VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M HA LF G G G++T +A V +PD V D C + +H Sbjct: 36 MSHAWLFTGPPGAGRSTTAVAFAAALVCTDPDV----VGCGRCDNCRAVFAGAHTDVVH- 90 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + PK VI+V+ +R I S G WRVI+ID D + AA+A L Sbjct: 91 -------IVPK----ELVISVETVRGIVNQASRLPTVGAWRVIIIDEADRFSTAAADAFL 139 Query: 152 KSLEEPPQKVLFILISHAS-PTILST-IRSRCLSIKFNSLSENNLYKALEQ 200 K++EEPP + IL + ++ P ST +RSRC + + SE+ + + L Q Sbjct: 140 KTVEEPPASTVIILSAPSTDPEDFSTMLRSRCRHLYVPAPSESEIVRLLTQ 190 >gi|113461627|ref|YP_719696.1| DNA polymerase III subunit delta' [Haemophilus somnus 129PT] gi|112823670|gb|ABI25759.1| DNA polymerase III, delta prime subunit [Haemophilus somnus 129PT] Length = 352 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 Q + + HHALLF+ EQGIG L AG ++ + R C C+ F + Sbjct: 40 QPFLQEKGHHALLFKAEQGIGIEQLIENIAGWLMCRQKDALQSCRQC--QSCALF--RAG 95 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 +H DF L SL+ K I V+++R + +S A G +V+ I + + + Sbjct: 96 NHP--DFYRLE-SLDNKD------IGVEQVREMNEKVSQFAKQGGNKVVFIRQAERLTES 146 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 AANALLK+LEEP F+L S +L+TI SRC + N+ +E L+Q Sbjct: 147 AANALLKTLEEPRPHTYFLLQMDFSAGLLATIYSRCQAWVINTPTEQQGLVWLQQ 201 >gi|262404370|ref|ZP_06080925.1| DNA polymerase III delta prime subunit [Vibrio sp. RC586] gi|262349402|gb|EEY98540.1| DNA polymerase III delta prime subunit [Vibrio sp. RC586] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M A L + G+G +L + A ++ S+ P C+ S + Q +H Sbjct: 24 AGNMLSATLIQAPDGVGIESLLEQMARTLMCTSSDSE-PCGFCH----SCGLMQAGTHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ + + P K GK ITV++IR I ++ +R+++IDP D MN +AAN Sbjct: 78 -DY----HVIKPEKVGK---SITVEQIRHINRIAQESSQLSGYRLMVIDPADAMNESAAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPHCLFILVTSRINYLLPTIVSRC 162 >gi|116514540|ref|YP_813446.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093855|gb|ABJ59008.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 592 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 41/283 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F S + + +E Q + D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDF 273 Y D + + +A Q +++++ LL+ D ++A D Sbjct: 227 FEKSSVRYEDALEVTG--FAAQEQVEKLLLALLNGDSQMALDL 267 >gi|330829419|ref|YP_004392371.1| DNA polymerase III subunits gamma and tau [Aeromonas veronii B565] gi|328804555|gb|AEB49754.1| DNA polymerase III, subunits gamma and tau [Aeromonas veronii B565] Length = 845 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 15/176 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ GR+HHA L G +G+GK T+ A + S P +C D C ++ Sbjct: 5 LTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVC--DTC----RE 58 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 + D L + + K R ++ + R R G ++V +ID V ++ Sbjct: 59 IDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPAR---------GRFKVYLIDEVHMLS 109 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 R++ NALLK+LEEPP V F+L + + TI SRCL SL + + K LE Sbjct: 110 RHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLE 165 >gi|288936781|ref|YP_003440840.1| DNA polymerase III subunits gamma/tau [Klebsiella variicola At-22] gi|288891490|gb|ADC59808.1| DNA polymerase III, subunits gamma and tau [Klebsiella variicola At-22] Length = 635 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|167948231|ref|ZP_02535305.1| DNA polymerase III, delta prime subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 144 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 L Q SGR+ HALLF G QG+GK +A +L Q PD S P C P Sbjct: 15 LQQMRDSGRLPHALLFSGPQGVGKELFAQLFAKSLLCQEPDSSGLPCGHCQP------CH 68 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 +AS DF ++ + K+G+ I VD IR + + +LT+ G R++++ P + M Sbjct: 69 LLASGVHPDFTNIAPDVESKSGE----ILVDTIRGLAFSTTLTSTAGSHRIVLLRPAERM 124 Query: 143 NRNAANA 149 + +AANA Sbjct: 125 SNSAANA 131 >gi|124267048|ref|YP_001021052.1| DNA polymerase III, delta prime subunit [Methylibium petroleiphilum PM1] gi|124259823|gb|ABM94817.1| DNA polymerase III, delta prime subunit [Methylibium petroleiphilum PM1] Length = 357 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 22/186 (11%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPVRMCNPDPC 77 +E L+Q G HALL G QG+G+ L A L D ++ R C C Sbjct: 13 LEAPLAQAL-HGTRGHALLLHGMQGVGQFELALTVAAAWLCEGDDPAARPGGRACRG--C 69 Query: 78 S----------PFVKQMASHALHDFLYLSYS---LNPKTGKWRTV----ITVDEIRRIRY 120 + P + + AL + L S S + + GK + I V+ +R Sbjct: 70 AACRLIAARTHPDLMVLVPEALQEALGWSGSDEAADGEGGKSKAKPSREIKVEAVRAAVA 129 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T++ G +V +I P + MN +AN LLK+LEEPP + F+L S A +L T+RSR Sbjct: 130 FAQQTSSRGGAKVTVIYPAERMNPASANTLLKTLEEPPGRARFVLASAAPQRLLPTVRSR 189 Query: 181 CLSIKF 186 C S++ Sbjct: 190 CQSLRV 195 >gi|157146903|ref|YP_001454222.1| DNA polymerase III subunits gamma and tau [Citrobacter koseri ATCC BAA-895] gi|157084108|gb|ABV13786.1| hypothetical protein CKO_02679 [Citrobacter koseri ATCC BAA-895] Length = 641 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|326565235|gb|EGE15420.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 12P80B1] Length = 748 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C + D + + + K V++ R + + Sbjct: 70 MTSQPCGVC--DTCI----SIDQGRFLDLIEIDAASRTK---------VEDTRELLENVP 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SRCL Sbjct: 115 YPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRCLQ 174 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 L + ++L K L+ KI ++ + A GSV A+ + Sbjct: 175 FVLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSL 222 >gi|325859609|ref|ZP_08172742.1| hypothetical protein HMPREF9303_0658 [Prevotella denticola CRIS 18C-A] gi|325482889|gb|EGC85889.1| hypothetical protein HMPREF9303_0658 [Prevotella denticola CRIS 18C-A] Length = 379 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 41/251 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMC 72 + G + + L Q R+ HALLF G +G GK L +A ++L + A P + Sbjct: 6 VIGQDAVSNRLVQMVKEDRLPHALLFCGPEGTGKMALAMAFACYLLAGDETGDAVPTSVS 65 Query: 73 N----------PD-----PCSPFVKQMASH---------ALHDFLYLS--YSLNPKTGKW 106 N PD P + H HD + +++N +W Sbjct: 66 NARAMLRQWEHPDLHFSYPTIKLPGMSSEHQPVSSDFAKEWHDLIMQGAYFTMN----QW 121 Query: 107 ---------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + +IT E + L+L ++ G ++V +I + MN +AN LLK LEEP Sbjct: 122 MKQMGATTQQAIITGAESDELARVLALKSSQGGYKVAIIWRPERMNLTSANKLLKLLEEP 181 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 PQ +F+++S +L TI SR I + + + +AL + + D+ +I A Sbjct: 182 PQGTVFLMVSEEPEKLLETIVSRTQRIDVKRIDDEAVEQALIARRGIDADAAHRIARI-A 240 Query: 218 YGSVARAIKIL 228 +GS +A++ L Sbjct: 241 HGSWLKALESL 251 >gi|238020685|ref|ZP_04601111.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147] gi|237867665|gb|EEP68671.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147] Length = 820 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 25/235 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G + + K L +GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQQHVVKALQNALANGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRR 117 +N +PC A A D L + + N TG +D IR Sbjct: 65 ENAQHG---------EPCGHCATCQAIDAGRFVDLLEIDAASN--TG-------IDNIRE 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ Sbjct: 107 VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITV 166 Query: 178 RSRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRCL + +++ ++L L I + + AA GS+ A+ +L Sbjct: 167 LSRCLQLVLRNMTAQQVSDHLAHVLNAEHIAYEPAALTLLGRAAQGSMRDALSLL 221 >gi|229514875|ref|ZP_04404336.1| DNA polymerase III delta prime subunit [Vibrio cholerae TMA 21] gi|229348855|gb|EEO13813.1| DNA polymerase III delta prime subunit [Vibrio cholerae TMA 21] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGLGAESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|225872170|ref|YP_002753625.1| DNA polymerase III, subunits gamma and tau [Acidobacterium capsulatum ATCC 51196] gi|225792771|gb|ACO32861.1| DNA polymerase III, subunits gamma and tau [Acidobacterium capsulatum ATCC 51196] Length = 698 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 5/189 (2%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L GR+ H +F G +GIGK T+ +L Sbjct: 5 VLARKYRPQRFSDVAGQEHVTRTLLNALAQGRIAHGYIFSGHRGIGKTTIA-----RILA 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P+ P P + + + LS +++ T +DEIR +R Sbjct: 60 MALNCRTPIGSTTGSPQRPTPEPCGVCESCEEIRLSNAVDVLEIDAATNRGIDEIRELRE 119 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ++D + A NALLK+LEEPP V+F++ + I TIRSR Sbjct: 120 AARYRPSRDRYKIYILDEAHQITDAAFNALLKTLEEPPDHVVFMMATTEPENIPQTIRSR 179 Query: 181 CLSIKFNSL 189 C F+++ Sbjct: 180 CQHFSFHAV 188 >gi|187251863|ref|YP_001876345.1| DNA polymerase III subunit delta' [Elusimicrobium minutum Pei191] gi|186972023|gb|ACC99008.1| DNA polymerase III, delta prime subunit [Elusimicrobium minutum Pei191] Length = 320 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 7/185 (3%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E L ++ SGR+ A+LF G +G GKA ++A + + ++A C Sbjct: 5 ILGQEKTINQLKKFIASGRIPQAMLFYGPKGTGKALTAKKFAMALNCTDEAARAEFDSCG 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C K + ++ DF++ ++ L K + + + ++ +R + T Sbjct: 65 T--CLN-CKNIIANTHPDFVWGDFAYQAGLTGKEVEKQQHMNIEAVRDMTTKSQQKIMTA 121 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V+++D + M +AANALLK +EEP ++IL +LSTI+SRC ++ F L Sbjct: 122 RYKVLVLDHAETMLPDAANALLKFIEEPAANTVWILNCAKKDLMLSTIKSRCQAVPFAPL 181 Query: 190 SENNL 194 N+ Sbjct: 182 KAKNV 186 >gi|153216425|ref|ZP_01950460.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 1587] gi|153802866|ref|ZP_01957452.1| DNA polymerase III, delta prime subunit [Vibrio cholerae MZO-3] gi|153830247|ref|ZP_01982914.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 623-39] gi|254226910|ref|ZP_04920477.1| DNA polymerase III, delta prime subunit [Vibrio cholerae V51] gi|124114284|gb|EAY33104.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 1587] gi|124121584|gb|EAY40327.1| DNA polymerase III, delta prime subunit [Vibrio cholerae MZO-3] gi|125620556|gb|EAZ48923.1| DNA polymerase III, delta prime subunit [Vibrio cholerae V51] gi|148874260|gb|EDL72395.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 623-39] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGLGAESL-VELMARTLMCTSSQTEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum DSM 5427] gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum DSM 5427] Length = 537 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + L S R+ HA LF G +G GK ++ +A V Sbjct: 8 RKYRPYIFDDVVGQGHIVRTLKNQINSHRVAHAYLFSGSRGTGKTSIAKIFARAV----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV C K+++ A + + + + + VD IR I + Sbjct: 63 NCEEPVNGSACGKCET-CKRISDGAGINIIEIDAASHN---------GVDNIREINEEVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YTPAVGKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTDPQKIPVTILSRCQR 172 Query: 184 IKFNSLSENNLYKAL 198 F +S + + L Sbjct: 173 FDFKRISAKEIEETL 187 >gi|270266972|gb|ACZ65311.1| DNA polymerase III subunits gamma and tau [Pectobacterium atrosepticum] Length = 177 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 15/177 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ G E + L+ GR+HHA LF G +G+GK T+ A + + P C Sbjct: 13 QVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCEQGVTATPCGQC 72 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C +++ D + + + K V++ R + + G ++ Sbjct: 73 --DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFK 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 V +ID V ++R++ NALLK+LEEPP V F+L + + TI SRCL +L Sbjct: 118 VYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKAL 174 >gi|260905521|ref|ZP_05913843.1| DNA-directed DNA polymerase [Brevibacterium linens BL2] Length = 385 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%) Query: 9 VYNQRLFGHED-IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 V+N+ L G +D I + Y G M HA LF G G G++ +A ++ + Sbjct: 3 VFNE-LVGQDDVITQLKHALYSPGAMTHAWLFTGPPGSGRSNAARAFAAALISGGE---- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + + + H H+ L + + ++VI +DE+R + Sbjct: 58 -------EQGDVTARVLKGH--HESLTIMSTQ-------KSVIAIDEVRELVTRAQSAPV 101 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WRV++I+ D M+ AN LLK++EEPP +++L + + +L+TIRSRC ++ Sbjct: 102 NSPWRVVIIEDADRMSERTANVLLKAIEEPPPATVWLLCAPSPIDVLTTIRSRCRPVRLR 161 Query: 188 SLSENNLYKAL 198 S + + + L Sbjct: 162 IPSRDAVAQLL 172 >gi|326799758|ref|YP_004317577.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21] gi|326550522|gb|ADZ78907.1| DNA polymerase III, subunits gamma and tau [Sphingobacterium sp. 21] Length = 607 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 16/187 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + ++ A LF G +G+GK T A + N Sbjct: 21 RKYRPSTFETVVGQQHITGTLKNAIKNSQLAQAFLFCGPRGVGKTTCARILAKTI--NCQ 78 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + C D C F + S ++H+ S + +VD+IR + + Sbjct: 79 HLSSEIEACGTCDSCKSF-QNGNSFSIHELDAASNN------------SVDDIRSLIEQV 125 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + TG +++ +ID V ++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 126 RIPPQTGKYKIYIIDEVHMLSTQAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQ 185 Query: 183 SIKFNSL 189 FN + Sbjct: 186 IFDFNRI 192 >gi|320449175|ref|YP_004201271.1| DNA polymerase III holoenzyme subunit tau [Thermus scotoductus SA-01] gi|320149344|gb|ADW20722.1| DNA polymerase III holoenzyme, subunit tau [Thermus scotoductus SA-01] Length = 492 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 18/215 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R P+ + L G E +++ L + GR+ A LF G +G+GK T A V Sbjct: 6 RRVRPLTFEELVGQEHVKEPLVRAIREGRLAQAYLFSGPRGVGKTTTARLLAMAV--GCQ 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P +C + + A D + + + N +V+++R +R + Sbjct: 64 GAERPCGVCA------HCQAVQKGAHPDVVEIDAASN---------NSVEDVRELRERIL 108 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L + +V ++D ++++A NALLK+LEEPP VLFI + + TI SR Sbjct: 109 LAPLSAPRKVFILDEAHMLSKSAFNALLKTLEEPPPHVLFIFATTEPERMPPTILSRTQH 168 Query: 184 IKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAA 217 +F L+E + L++ LK MG +++ D + + A Sbjct: 169 YRFRRLTEEEIAFKLQRILKEMGREAEEDALLLVA 203 >gi|158520559|ref|YP_001528429.1| DNA polymerase III, subunits gamma and tau [Desulfococcus oleovorans Hxd3] gi|158509385|gb|ABW66352.1| DNA polymerase III, subunits gamma and tau [Desulfococcus oleovorans Hxd3] Length = 570 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 27/244 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + + + L+ SGR+ HA+LF G +G GK T+ A + Sbjct: 5 VLARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHAILFTGPRGTGKTTIARILAKAM-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + K P P PC ++AS D + + N +VD++R + Sbjct: 63 --NCEKGPT----PTPCCACRSCLEIASGNATDVFEIDGASN---------NSVDQVREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + +++ +ID V ++ A NALLK+LEEPP V+F + I TI Sbjct: 108 RGNVKFMPAHSPYKIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC + + + L LE L I + + A GSV ++ +L D+ Sbjct: 168 SRCQRHDLSFVGIDPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLL----DQ 223 Query: 235 IISS 238 ++SS Sbjct: 224 VMSS 227 >gi|59712294|ref|YP_205070.1| DNA polymerase III subunits gamma and tau [Vibrio fischeri ES114] gi|59480395|gb|AAW86182.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Vibrio fischeri ES114] Length = 708 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ K++ D L + + K V++ R + Sbjct: 65 EEGITSTPCGVCS------TCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +S + +++ L+ Sbjct: 170 CLQFHLKHISVDQIHEQLD 188 >gi|326562873|gb|EGE13160.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 46P47B1] gi|326570998|gb|EGE21022.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC7] Length = 748 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 19/228 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 10 RKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C + D + + + K V++ R + + Sbjct: 70 MTSQPCGVC--DTCI----SIDQGRFLDLIEIDAASRTK---------VEDTRELLENVP 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SRCL Sbjct: 115 YPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRCLQ 174 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 L + ++L K L+ KI ++ + A GSV A+ + Sbjct: 175 FVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSL 222 >gi|258513456|ref|YP_003189678.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum acetoxidans DSM 771] gi|257777161|gb|ACV61055.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum acetoxidans DSM 771] Length = 527 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 31/242 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT----LGFRYAGHVL 59 R + P + G I L + R+ HA LF G +G GK + L H + Sbjct: 8 REYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAKALNCHQI 67 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + V CN CS V A+ D + + + N +DEIR ++ Sbjct: 68 KG-------VEPCNK--CSSCVSVAQGSAI-DVIEIDAASNR---------GIDEIRDLK 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V ++D V + A NALLK+LEEPP+ V+F+L + + TI S Sbjct: 109 ERVKFAPTGGKYKVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILS 168 Query: 180 RCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F S+ + L L+ L++ + + + AA G + A+ IL D+I Sbjct: 169 RCQRFDFKSIGAEPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSIL----DQI 224 Query: 236 IS 237 I+ Sbjct: 225 IT 226 >gi|240144621|ref|ZP_04743222.1| DNA polymerase III delta subunit [Roseburia intestinalis L1-82] gi|257203337|gb|EEV01622.1| DNA polymerase III delta subunit [Roseburia intestinalis L1-82] Length = 349 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + GHE I + L ++ HA + G GK + +A LQ +K + Sbjct: 7 IVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFA-QTLQCEAVNKKLEELAG 65 Query: 73 -----------NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RI 118 +PC KQ A D +Y+S+ P T I+VD+IR ++ Sbjct: 66 ETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHE-KPNT------ISVDDIRTQL 118 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++ ++D + MN+ A NALLK++EEPP + +L++ + + L TI Sbjct: 119 NNDIVIKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTTNAESFLPTIL 178 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 SRC+++ ++ + + K L D + D A G+V +AI++ D Sbjct: 179 SRCVTLNLKAVPDEKIKKFL-MAHYQIPDYQADVCVAFAQGNVGKAIQLAASD 230 >gi|254448831|ref|ZP_05062287.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015] gi|198261521|gb|EDY85810.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015] Length = 556 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 35/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFSELVGQTHVLRALINALDEDRLHHAYLFTGTRGVGKTTIARIIAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C CS V ++ D + + + K VD+ R + Sbjct: 65 EQGVSSTP---CGE--CSACV-EIDEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKIL-------- 228 CL + + E L G + + +K AA GS+ ++ +L Sbjct: 170 CLQFNLKQMPPEAIVAHHEHILGAEGIEYETQALKHIARAAEGSMRDSLSLLDQAIAFGH 229 Query: 229 -HYDCDKIIS--SYIDLIHIPR--QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 D ++S +I HI R Q A Q +Q+ + ++Q ++A DF+ F E+ Sbjct: 230 GRVRSDDVVSMLGFISRDHIERILQALAAQNSEQVM-QAIAQLAEMAPDFVTVF--NELI 286 Query: 284 KSAKAAALSGQLEEA 298 + AL+ ++ EA Sbjct: 287 ATLHQMALAKRVAEA 301 >gi|153827000|ref|ZP_01979667.1| DNA polymerase III, delta prime subunit [Vibrio cholerae MZO-2] gi|149739119|gb|EDM53408.1| DNA polymerase III, delta prime subunit [Vibrio cholerae MZO-2] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGVGVESL-VELMARTLMCTSSQTEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|317153154|ref|YP_004121202.1| DNA polymerase III subunits gamma and tau [Desulfovibrio aespoeensis Aspo-2] gi|316943405|gb|ADU62456.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio aespoeensis Aspo-2] Length = 654 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 17/187 (9%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMCNP 74 G E I+ LS+ R+ A LF G +G+GK TL +A + + + AP CN Sbjct: 20 GQEAIKAILSRAAEQNRIAPAYLFSGTRGVGKTTLARIFAKAL----NCANAPTAEPCNQ 75 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 CS +Q+ + D + + + N +D+ RR++ + ++V Sbjct: 76 --CS-NCRQITAGVAVDVIEIDGASN---------RGIDDARRLKEDIGYAPVECRYKVF 123 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID + + A NALLK+LEEPP + FI+ + +TI SRC F LS+ L Sbjct: 124 IIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEPHKFPATIVSRCQHYTFKMLSQQAL 183 Query: 195 YKALEQL 201 + LE+L Sbjct: 184 VEHLEKL 190 >gi|168237601|ref|ZP_02662659.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735928|ref|YP_002113515.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711430|gb|ACF90651.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289588|gb|EDY28951.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 642 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|302343842|ref|YP_003808371.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii DSM 2075] gi|301640455|gb|ADK85777.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii DSM 2075] Length = 532 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 31/245 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R P ++ G E + L+ SGR+ HA F G +G+GK ++ A + Sbjct: 5 VLARKHRPATFSQVVGQEHVTATLAGAIASGRVAHAFCFTGPRGVGKTSVARILAKALNC 64 Query: 59 LQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 Q P PC V +++ D + + N + V+++R Sbjct: 65 QQGP----------TDQPCGVCVHCREIDEGRAVDVQEIDAASNSR---------VEDVR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +R + + RV ++D V +++ A NALLK+LEEPP+ +FIL + + + T Sbjct: 106 ELREVIRFRPQSARHRVTILDEVHMLSKAAFNALLKTLEEPPEHAVFILATTDAHKVPLT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILHYDC 232 I SRC F L+ L + L + + G+D + + + A GSV ++ +L Sbjct: 166 ILSRCQRYDFRRLAPRVLTEHLAGVCQAEGFDLPPESLALLAREADGSVRDSLSLL---- 221 Query: 233 DKIIS 237 D+++S Sbjct: 222 DQVLS 226 >gi|288800714|ref|ZP_06406171.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332175|gb|EFC70656.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] Length = 376 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 54/350 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G +D++ L SG+M H+LL G G GK L A H+L D + N Sbjct: 6 VIGQDDVKSRLLTLIESGKMPHSLLLYGAPGCGKMALALALASHLLGENDVN-------N 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTG--------------KW------------- 106 P S VK M H L+ SY + TG +W Sbjct: 59 PKAAS--VKAMLDRWEHPDLHFSYPVIRPTGTTADHKMISDDFAKEWNLLLKKGPYFDMD 116 Query: 107 -----------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 + +I E + L+L ++ G ++V +I + MN AN LLK LE Sbjct: 117 TWLEHMNAANQQAIIFASESDNLTRKLNLKSSMGGYKVAIIWLPERMNVECANKLLKLLE 176 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 EPP + LFI++S A +L T+RSR I+ + L AL + + + D+ +I Sbjct: 177 EPPHQTLFIMVSEAPERLLETVRSRTQMIQVKRIDTAVLECALVEKRGLDDDTAHRVAQI 236 Query: 216 AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA--LQKMQQIADELLS---QDQKIA 270 A GS AI++L+ D + + D + + R Y +++M+ ++ + + + QK Sbjct: 237 AN-GSWLDAIRMLNADSEA-KQFFNDFVGVMRASYRRDIREMKAWSERVATYGREKQKRM 294 Query: 271 FDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + + K ++L ++ +Q AQ + + + +Y L Sbjct: 295 LLYFHRMFRENFMYNFKQSSLIHFTQDEEQFAQKFAPFINEKNIIELYEL 344 >gi|261339400|ref|ZP_05967258.1| DNA polymerase III, delta' subunit [Enterobacter cancerogenus ATCC 35316] gi|288318201|gb|EFC57139.1| DNA polymerase III, delta' subunit [Enterobacter cancerogenus ATCC 35316] Length = 334 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 19/164 (11%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPC 77 E+ +S Y +GR HHALL + G+G L + ++ Q P K+ R C Sbjct: 12 EQLISSYQ-AGRGHHALLIQALPGMGDDALIYAITRFLMCQKPQGHKSCGQCRGCQ---- 66 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + Q +H D+ Y+L P+ GK + +D +R + L A G +V+ + Sbjct: 67 ---LMQAGTHP--DY----YTLEPEKGK--NTLGIDAVRDVSEKLYEHARLGGAKVVWLK 115 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP+K F+L +L+T+RSRC Sbjct: 116 DAAILTEAAANALLKTLEEPPEKTWFLLSCREPGRLLATLRSRC 159 >gi|157414264|ref|YP_001485130.1| DNA polymerase, subunits gamma and tau [Prochlorococcus marinus str. MIT 9215] gi|157388839|gb|ABV51544.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9215] Length = 586 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G + I L + + ++ A LF G +G GK T R L F K + C Sbjct: 19 ELVGQKFISITLKEALLTQKIAPAYLFNGPRGTGK-TSSARIFAKSLNCLAFDKPTINPC 77 Query: 73 NPDPCS-PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C +Q+ D + + + N TG V+ IR I W Sbjct: 78 ----CKCDLCRQITDGNALDIIEIDAASN--TG-------VENIREIIERARFAPTQARW 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC F +S Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISP 184 Query: 192 NNLYKALEQL 201 ++++ L ++ Sbjct: 185 GDIFQHLSEI 194 >gi|205351792|ref|YP_002225593.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271573|emb|CAR36393.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626828|gb|EGE33171.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 642 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|327314440|ref|YP_004329877.1| hypothetical protein HMPREF9137_2224 [Prevotella denticola F0289] gi|326945963|gb|AEA21848.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 379 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 41/251 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMC 72 + G + + L Q R+ HALLF G +G GK L +A ++L + A P + Sbjct: 6 VIGQDAVSNRLVQMVKEDRLPHALLFCGPEGTGKMALAMAFACYLLAGDETGDAVPTSVS 65 Query: 73 N----------PD-----PCSPFVKQMASH---------ALHDFLYLS--YSLNPKTGKW 106 N PD P + H HD + +++N +W Sbjct: 66 NARAMLRQWEHPDLHFSYPTIKLPGMSSEHQPVSSDFSKEWHDLIMQGAYFTMN----QW 121 Query: 107 ---------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + +IT E + L+L ++ G ++V +I + MN +AN LLK LEEP Sbjct: 122 MKQMGATTQQAIITGAESDELARVLALKSSQGGYKVAIIWRPERMNLTSANKLLKLLEEP 181 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 PQ +F+++S +L TI SR I + + + +AL + + D+ +I A Sbjct: 182 PQGTVFLMVSEEPEKLLETIVSRTQRIDVKRIDDEAVEQALIARRGIDADAAHRIARI-A 240 Query: 218 YGSVARAIKIL 228 +GS +A++ L Sbjct: 241 HGSWLKALESL 251 >gi|289679612|ref|ZP_06500502.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae FF5] Length = 212 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +++ + + L + Sbjct: 170 CLQFSLKNMTPERVVEHLTHV 190 >gi|258545555|ref|ZP_05705789.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] gi|258519255|gb|EEV88114.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] Length = 636 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 4 VLARKWRPKNFHELVGQTHVTQALTYALDHNRIHHAYLFTGTRGVGKTTIARIFAKSLNC 63 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 Q S P C D C K++ D + + + + V+E R + Sbjct: 64 QKNHVSSNPCGEC--DHC----KEIDQGRFPDLIEVDAASRSR---------VEETRELL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V + ++ NALLK+LEEPP V FIL + + +TI S Sbjct: 109 DNVPYAPVKGQYKVYLIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILS 168 Query: 180 RCLSIKFNSLSENNLYKAL 198 RCL ++SE + + L Sbjct: 169 RCLQFHLKNMSERQISEHL 187 >gi|253698849|ref|YP_003020038.1| DNA polymerase III subunits gamma/tau [Geobacter sp. M21] gi|251773699|gb|ACT16280.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M21] Length = 579 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK T R L Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGK-TSSARILAKALN 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S V CN CS ++ +++ D + + N TG VD+IR +R Sbjct: 64 CE--SGLTVEPCNT--CSTCLEITEGNSV-DVFEIDGASN--TG-------VDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 170 CQRFDFKRIA 179 >gi|322614760|gb|EFY11689.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618867|gb|EFY15755.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623574|gb|EFY20413.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629127|gb|EFY25906.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631848|gb|EFY28602.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637415|gb|EFY34117.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642100|gb|EFY38710.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645876|gb|EFY42397.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652338|gb|EFY48693.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653241|gb|EFY49574.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660610|gb|EFY56846.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664762|gb|EFY60955.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669185|gb|EFY65335.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670730|gb|EFY66863.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679031|gb|EFY75086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682060|gb|EFY78085.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685111|gb|EFY81108.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192995|gb|EFZ78218.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196923|gb|EFZ82065.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203908|gb|EFZ88925.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207007|gb|EFZ91960.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214210|gb|EFZ98968.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214466|gb|EFZ99217.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219191|gb|EGA03688.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226972|gb|EGA11153.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230210|gb|EGA14330.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233948|gb|EGA18037.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238358|gb|EGA22416.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244045|gb|EGA28054.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323251832|gb|EGA35695.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257828|gb|EGA41507.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261158|gb|EGA44750.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264912|gb|EGA48411.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272475|gb|EGA55882.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 642 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|56476074|ref|YP_157663.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] gi|56312117|emb|CAI06762.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] Length = 659 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKNFATLVGQEHVVRALSHALATGRLHHAWLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + + D++ + + N V+++ + Sbjct: 65 ETGVTPEPCGTCA------ACRAIDADRFPDYVEMDAASN---------RGVEDMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNL 194 CL + ++ Sbjct: 170 CLQFNLKQMPPGHI 183 >gi|53715377|ref|YP_101369.1| putative DNA polymerase III delta subunit [Bacteroides fragilis YCH46] gi|60683346|ref|YP_213490.1| putative DNA polymerase III delta prime subunit [Bacteroides fragilis NCTC 9343] gi|253567399|ref|ZP_04844847.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265768275|ref|ZP_06095534.1| DNA polymerase III, delta' subunit [Bacteroides sp. 2_1_16] gi|52218242|dbj|BAD50835.1| putative DNA polymerase III delta subunit [Bacteroides fragilis YCH46] gi|60494780|emb|CAH09586.1| putative DNA polymerase III delta prime subunit [Bacteroides fragilis NCTC 9343] gi|251943781|gb|EES84320.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263252210|gb|EEZ23758.1| DNA polymerase III, delta' subunit [Bacteroides sp. 2_1_16] Length = 369 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 24/241 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPV-- 69 + G E+ + L Q GR+ HA LF G +G+GK L YA ++ D V Sbjct: 6 VIGQEEAKYRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSDTDACGVCP 65 Query: 70 ------RMCNPDP--CSPFVKQMASHAL----------HDFLYLSYSLNPKTGK-WRTVI 110 ++ +PD P VK S + + +++ LN + + VI Sbjct: 66 SCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAENAQAVI 125 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 E I LSL ++ G +++ ++ + M + AN LLK LEEPP+K +F+L+S A Sbjct: 126 YTKESDEIMKKLSLKSSEGGFKITLLWLPEKMQQACANKLLKLLEEPPEKTIFLLVSEAP 185 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 IL TI SR + E + +AL Q K + + A G+ +A++ +H Sbjct: 186 DLILQTILSRTQRFNLRKIEEECMAEAL-QSKYGVQQATSISIAHLANGNFIKALETIHL 244 Query: 231 D 231 + Sbjct: 245 N 245 >gi|330752554|emb|CBL87501.1| DNA polymerase III subunit gamma/tau [uncultured Flavobacteria bacterium] Length = 544 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 27/187 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +FG + I K L + + + A LF G +G+GK T +A + + Sbjct: 5 RKYRPNKFSEVFGQDSITKALEKSISNQMLSQAYLFCGPRGVGKTTCARIFAKEINNRDN 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 SK D+ Y + L+ + +V++IR + + Sbjct: 65 SSKN----------------------QDYTYNIFELDAASNN-----SVEDIRSLTDQVR 97 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++++A NA LK+LEEPP FIL + I+ TI SRC + Sbjct: 98 IPPQNGAFKVYIIDEVHMLSQSAFNAFLKTLEEPPSHAKFILATTEKHKIIPTILSRCQT 157 Query: 184 IKFNSLS 190 F +S Sbjct: 158 FDFKRIS 164 >gi|239996413|ref|ZP_04716937.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii ATCC 27126] Length = 557 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P CN K + D L + + K V++ R + Sbjct: 65 EEGQGANPCGQCN------TCKDIEQGNYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYKPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++S + L+ + Sbjct: 170 CLQFNLKAMSREQIVGQLQHI 190 >gi|124010461|ref|ZP_01695100.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC 23134] gi|123983439|gb|EAY23927.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC 23134] Length = 575 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 34/290 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---LQ 60 R + P + G I L S ++ A LF G +G+GK T A + Sbjct: 9 RKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCLTP 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 DF C + C F Q + + Y L+ + +VD+IR + Sbjct: 69 TEDFEACGT--C--ESCVSFQNQGSMNV--------YELDAASSN-----SVDDIRNLVD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +G +V +ID V ++ +A NA LK+LEEPP+ V+FIL + I+ TI SR Sbjct: 112 QVRYPPQSGKRKVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----ILHYDC 232 C F + ++ L + +I D + A G + A+ I + Sbjct: 172 CQIFDFKRIEVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSA 231 Query: 233 DKIIS--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D+ I+ S + +HI +Y +I D LL+QD + + E + K Sbjct: 232 DRHITYQSVVKNLHILDHDYYF----KITDALLAQDMPLVLLYFDEILRK 277 >gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107] gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107] Length = 636 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 27/207 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVR 70 +L G E I L S R+ A LF G +G GK T R L QN D Sbjct: 19 QLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGK-TSSARILARSLNCQNSDGP----- 72 Query: 71 MCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P+PC + +AS D + + + N TG VD IR + Sbjct: 73 --TPEPCGTCDLCRTIASGTALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQ 121 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F Sbjct: 122 ARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRR 181 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKI 215 + ALEQ + W ++++ + I Sbjct: 182 IP----LDALEQH--LTWIAEQESIAI 202 >gi|204930489|ref|ZP_03221419.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320423|gb|EDZ05626.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|198243935|ref|YP_002214437.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855963|ref|YP_002242614.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197938451|gb|ACH75784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206707766|emb|CAR32051.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622184|gb|EGE28529.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|295088193|emb|CBK69716.1| DNA polymerase III, gamma/tau subunits [Bacteroides xylanisolvens XB1A] Length = 374 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 35/249 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVNEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGTCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHAL-HDFLYLSYSLNPKTGK- 105 L +PD F + C ++ + H + L++ L + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRPFVINHPYFNLNHWLGEMDAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 SQALIYAKESDEILKKLSLKSSEGGFKITIVWLPEKMHPVCANKLLKLLEEPPEKTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSVA 222 IS A IL TI SR + + E ++ + L+ + I+ DS + IA A G+ Sbjct: 186 ISEAPDMILPTILSRTQRMNVRKIDEASIDRVLQTKYNILPADS----ISIAHLANGNFI 241 Query: 223 RAIKILHYD 231 +A++ +H + Sbjct: 242 KALETIHLN 250 >gi|238911386|ref|ZP_04655223.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|197247588|ref|YP_002145467.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211291|gb|ACH48688.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|194442832|ref|YP_002039727.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401495|gb|ACF61717.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] Length = 558 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I L Q S ++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQSVISTTLKQAVESKKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 NGEPCNNCDICHDITNGSLEDVIEIDAASNNG---------VDEIREIRDKSTYAPSRAN 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNL 194 + ++ Sbjct: 179 QKDI 182 >gi|168240315|ref|ZP_02665247.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450868|ref|YP_002044517.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409172|gb|ACF69391.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339944|gb|EDZ26708.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|16759463|ref|NP_455080.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142765|ref|NP_806107.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162890|ref|ZP_03348600.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427143|ref|ZP_03359893.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213865424|ref|ZP_03387543.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25288577|pir||AG0562 DNA polymerase III chains gamma and tau [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501755|emb|CAD04969.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi] gi|29138397|gb|AAO69967.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|62179095|ref|YP_215512.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126728|gb|AAX64431.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713556|gb|EFZ05127.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 642 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|227529515|ref|ZP_03959564.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis ATCC 49540] gi|227350600|gb|EEJ40891.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis ATCC 49540] Length = 609 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 8 RVWRPQRFDDMVGQQVVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCHHS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C K + + L+D + + + N V+EIR IR Sbjct: 68 QDGEPCNEC--DTC----KAITNGQLNDVIEIDAASNNG---------VEEIRDIRDKAK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 113 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQR 172 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKRDFV-KIAAYGSVARAIKILHYDCDKIIS 237 F +S + ++ ++ + K + +D K +V AA G + A+ IL D+++S Sbjct: 173 FDFRRISATDSFERMKYILDQKKVEYDEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium cellulolyticum H10] gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulolyticum H10] Length = 562 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 25/192 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + E + + + SGR+ HA LF G +G GK T+ +A Sbjct: 8 RKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFA-------- 59 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + NP +PC+ + + ++ D + + + N +VD +R I Sbjct: 60 ---RAINCINPKDGNPCNECEVCRGILDESILDVVEIDAASNN---------SVDNVREI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI Sbjct: 108 RDEVVYAPSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATIL 167 Query: 179 SRCLSIKFNSLS 190 SRC F ++ Sbjct: 168 SRCQRFDFKKIT 179 >gi|262166119|ref|ZP_06033856.1| DNA polymerase III delta prime subunit [Vibrio mimicus VM223] gi|262025835|gb|EEY44503.1| DNA polymerase III delta prime subunit [Vibrio mimicus VM223] Length = 324 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L + +G+G +L + L + P C+ S + Q +H D Sbjct: 26 KISAATLIQAPEGVGAESL-VEHMARTLMCTSSNSEPCGFCH----SCGLMQAGNHP--D 78 Query: 92 FLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 F + + P K GK ITV++IR I ++ +R+I+++P D MN +AANAL Sbjct: 79 F----HVVKPEKVGK---SITVEQIRHINRVAQESSQLSGYRLIVVEPADAMNESAANAL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEP LFIL++ +L TI SRC Sbjct: 132 LKTLEEPAPDCLFILVTSRINHLLPTIVSRC 162 >gi|302669596|ref|YP_003829556.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio proteoclasticus B316] gi|302394069|gb|ADL32974.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio proteoclasticus B316] Length = 533 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 21/230 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P + + G + I L S R+ HA LF G +G GK ++ A V +NP Sbjct: 8 RKFRPPVFEDVKGQDHIVTTLKNQIKSDRVGHAYLFCGTRGTGKTSVAKILARAVNCENP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +P C +++A+ + + + + N VD +R I + Sbjct: 68 -VDGSPCGQCE------MCREIAAGNSMNVIEIDAASNNG---------VDNVREIIDEV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S + G +V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 112 SYSPTKGKKKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEVQKLPITILSRCQ 171 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ ++ E L + ++ I D +V A GS+ ++ +L Sbjct: 172 RYDFHRITIDTIEARLREVVDAEGIKVEDRALRYVAKTADGSMRDSLSLL 221 >gi|297579519|ref|ZP_06941447.1| DNA polymerase III [Vibrio cholerae RC385] gi|297537113|gb|EFH75946.1| DNA polymerase III [Vibrio cholerae RC385] Length = 324 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGLGAESL-VELMARTLMCTSSQTEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|262276244|ref|ZP_06054053.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP 101886] gi|262220052|gb|EEY71368.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP 101886] Length = 708 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHQFRDVVGQSHVLTALANALDHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D L + + K V++ R + Sbjct: 65 EQGITSTPCGVCA------TCQEIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL L ++ L LEQ + + AA GS+ A+ + Sbjct: 170 CLQFHLKHLDVTQIKDQLSHVLEQESVPAETRALSMIARAAEGSMRDALSL 220 >gi|290474637|ref|YP_003467517.1| DNA polymerase III subunits tau/gamma; DNA elongation factor III [Xenorhabdus bovienii SS-2004] gi|289173950|emb|CBJ80737.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Xenorhabdus bovienii SS-2004] Length = 658 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQIFSDVIGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +K P C + L + G++ +I +D R + Sbjct: 65 ETGITKTPCGQC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 + TI SRCL +L+ + + LE + +I R + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFHLKALNVDQISGQLEHVLNAEQIESDSRARHLLARAADGSMRDALSL 220 >gi|170692333|ref|ZP_02883496.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis C4D1M] gi|170142763|gb|EDT10928.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis C4D1M] Length = 996 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL ++ + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNCETGVTSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|89891553|ref|ZP_01203058.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium BBFL7] gi|89516327|gb|EAS18989.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium BBFL7] Length = 624 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 26/187 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I K L S + ALLF G +G+GK T A + Q Sbjct: 9 RKYRPETFEDVVGQSAITKTLENAIASNHLAQALLFTGPRGVGKTTCARILAKKINQ--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A V +PD DF + + L+ + +VD+IR + + Sbjct: 66 -QNAEV---DPD--------------EDFAFNIFELDAASNN-----SVDDIRSLTEQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 103 IPPQVGNFKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSLS 190 F ++ Sbjct: 163 FDFKRIT 169 >gi|50954228|ref|YP_061516.1| DNA polymerase III subunit delta' [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950710|gb|AAT88411.1| DNA polymerase III, delta prime subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 396 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 18/156 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ L G G G++ L F +A +L +P P+ +Q+ + D Sbjct: 37 MTHSWLITGPPGSGRSNLAFAFATALL-SP---------GTPEADRTARRQVEARTHPDL 86 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 LS R +I++DE+R + + +RV++I+ D M +N LLK Sbjct: 87 TVLSTE--------RVIISIDEVRSLVSGSQFAPSVARFRVMIIEDADRMTERTSNVLLK 138 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +LEEPP++ ++IL + + +L TIRSR +++ + Sbjct: 139 ALEEPPERTVWILCAPSEADLLPTIRSRVRTVRLKA 174 >gi|1527143|gb|AAC97559.1| DNA polymerase III tau subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 642 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|307729576|ref|YP_003906800.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. CCGE1003] gi|307584111|gb|ADN57509.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1003] Length = 954 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ GR+HHA LF G +G+GK TL ++ + + P +C Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNCETGVTSTPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE + Sbjct: 183 IVSHLEHI 190 >gi|167550989|ref|ZP_02344745.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168231475|ref|ZP_02656533.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261077|ref|ZP_02683050.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194471215|ref|ZP_03077199.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262082|ref|ZP_03162156.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389464|ref|ZP_03216075.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224582321|ref|YP_002636119.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194457579|gb|EDX46418.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197240337|gb|EDY22957.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601909|gb|EDZ00455.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205324245|gb|EDZ12084.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334143|gb|EDZ20907.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349826|gb|EDZ36457.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466848|gb|ACN44678.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084759|emb|CBY94549.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 642 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|56414361|ref|YP_151436.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363281|ref|YP_002142918.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128618|gb|AAV78124.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094758|emb|CAR60291.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 642 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|330833256|ref|YP_004402081.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3] gi|329307479|gb|AEB81895.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3] Length = 555 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L Q G++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKAL 198 ++ + L Sbjct: 179 VTDIQEHL 186 >gi|312621630|ref|YP_004023243.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor kronotskyensis 2002] gi|312202097|gb|ADQ45424.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor kronotskyensis 2002] Length = 534 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + E I + L ++ HA +F G +G GK T Sbjct: 7 RKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 57 MSRA-VNCLNPKDGNPCNECEICRSILDEKTLDVLEIDAASNT---------SVNDVRQI 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP+ LFIL + + +TI Sbjct: 107 RDEVRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 167 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 221 >gi|206603845|gb|EDZ40325.1| DNA polymerase III [Leptospirillum sp. Group II '5-way CG'] Length = 343 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 22/197 (11%) Query: 11 NQRLFGHEDIEKFLSQYYCSGR---MHHALLFEGEQGIGKATLGFRYAGHVL----QNPD 63 N R + L + +GR + LF G +GIGK ++ +L +PD Sbjct: 5 NTRNREEPRLPDLLQRLLIAGRSVPIPATYLFHGPRGIGKKQAALLWSRLLLCTRPGHPD 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ F K + H D L +S P G T I +DE RR+ L Sbjct: 65 MTACPS-------CAQFDKFSPENVHHPDILQIS----PGEG---TSIPIDETRRLLSEL 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S G R ++D + +AAN+LLK+LE+PP+K L IL++ +L T+ SR + Sbjct: 111 SNAPLLGSRRTAILDEAHLLTESAANSLLKTLEDPPEKTLIILVTPYPDNLLPTLLSRTV 170 Query: 183 SIKFNSLSENNLYKALE 199 S+ F+ + + ++LE Sbjct: 171 SVGFSGRTREEMEESLE 187 >gi|197116612|ref|YP_002137039.1| DNA polymerase III, gamma/tau subunits [Geobacter bemidjiensis Bem] gi|197085972|gb|ACH37243.1| DNA polymerase III, gamma and tau subunits [Geobacter bemidjiensis Bem] Length = 582 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK T R L Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGK-TSSARILAKALN 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S V CN CS ++ +++ D + + N TG VD+IR +R Sbjct: 64 CE--SGLTVEPCNT--CSTCLEITEGNSV-DVFEIDGASN--TG-------VDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 170 CQRFDFKRIA 179 >gi|77360742|ref|YP_340317.1| DNA polymerase III subunit delta prime [Pseudoalteromonas haloplanktis TAC125] gi|76875653|emb|CAI86874.1| putative DNA polymerase III delta' subunit [Pseudoalteromonas haloplanktis TAC125] Length = 304 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 14/167 (8%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC- 77 DIE+ L+Q + + R HHA LF G G+GK + A +L N + + C Sbjct: 8 DIEQRLTQSFKAQRFHHAQLFSGPIGVGKFAFASQLANALLCNNIAEQVAAKKSVLSACG 67 Query: 78 ---SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 S + + +H L G+ I VD+IR I F+ +A +V Sbjct: 68 QCKSCLLIKAGTHP-------DKRLTQVDGQ---SIGVDDIRGISDFMHHSAAQNGNKVA 117 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +I+ + M AANALLK+LEEP Q IL S + + +T+ SRC Sbjct: 118 IIENCEKMTTAAANALLKTLEEPSQSRFLILTSSQATQLPATVLSRC 164 >gi|146319281|ref|YP_001198993.1| DNA polymerase III subunits gamma and tau [Streptococcus suis 05ZYH33] gi|146321485|ref|YP_001201196.1| DNA polymerase III subunits gamma and tau [Streptococcus suis 98HAH33] gi|253752319|ref|YP_003025460.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84] gi|253754145|ref|YP_003027286.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7] gi|253756079|ref|YP_003029219.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407] gi|145690087|gb|ABP90593.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 05ZYH33] gi|145692291|gb|ABP92796.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 98HAH33] gi|251816608|emb|CAZ52246.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84] gi|251818543|emb|CAZ56374.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407] gi|251820391|emb|CAR46990.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7] gi|292558914|gb|ADE31915.1| DNA-directed DNA polymerase [Streptococcus suis GZ1] gi|319758715|gb|ADV70657.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14] Length = 555 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L Q G++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKAL 198 ++ + L Sbjct: 179 VTDIQEHL 186 >gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] Length = 555 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + L Q G++ HA LF G +G GK + +A + P+ Sbjct: 16 EMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAT 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKAL 198 ++ + L Sbjct: 179 VTDIQEHL 186 >gi|315223833|ref|ZP_07865681.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] gi|314946163|gb|EFS98164.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] Length = 363 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A + + Sbjct: 9 RKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILAKKINE--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +DF + + L+ + +VD+IR++ + Sbjct: 66 ------------------QTSGVEDENDFAFNVFELDAASNN-----SVDDIRKLIEQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 103 IPPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ N++ + L EQ I D + A G++ A+ I D+++S Sbjct: 163 FDFKRITINDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIF----DRVVS 216 >gi|307256293|ref|ZP_07538076.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865119|gb|EFM97019.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 465 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 19/225 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 C+ +L + N+L L+Q I + + + AA GS+ Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSI 214 >gi|255023001|ref|ZP_05294987.1| hypothetical protein LmonocyFSL_05110 [Listeria monocytogenes FSL J1-208] Length = 169 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 15/177 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 8 RVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C K ++ D L + + N V+EIR IR + Sbjct: 68 HDGEPCNECE------ICKGTTDGSIPDVLEIDAASNNG---------VEEIRDIREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 113 YAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISR 169 >gi|309782016|ref|ZP_07676746.1| DNA polymerase III, delta prime subunit [Ralstonia sp. 5_7_47FAA] gi|308919082|gb|EFP64749.1| DNA polymerase III, delta prime subunit [Ralstonia sp. 5_7_47FAA] Length = 335 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 10/181 (5%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A +L P P C C+ F + Sbjct: 18 AKLPHAILLNGQAGTGKRDFAMHFAQSLLCDTPAPDGQPCGTCAA--CNWFAQGNHPDFH 75 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ D + K +I ++++R + + + + RV+++ P+D + Sbjct: 76 LVRPEAMEDAPETEKDADGKKKAPSKIIRMEQVRNLIEGVGVGTHRAGLRVVVLYPLDAL 135 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 ANALLK+LEEPPQ +F+L++ IL TI SRC + LEQ Sbjct: 136 QTEGANALLKTLEEPPQNTVFLLVTDRIDRILPTILSRCRQFPLQQPQPEAARQWLEQQG 195 Query: 203 I 203 + Sbjct: 196 V 196 >gi|193213177|ref|YP_001999130.1| DNA-directed DNA polymerase [Chlorobaculum parvum NCIB 8327] gi|193086654|gb|ACF11930.1| DNA-directed DNA polymerase [Chlorobaculum parvum NCIB 8327] Length = 389 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 35/255 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA------------------ 55 + GHE+ + L S R+ HA LF G +G GK T+ F A Sbjct: 6 IVGHENQIRVLKTALGSNRLAHAYLFAGPEGSGKETVAFELAKILNCRNTNLLPDEGSCG 65 Query: 56 -------GHVLQNPD----FSKAPVRMCNPDPCSPFVKQMAS-----HALHDFLYLSYSL 99 L +P+ F + DP K++A AL D + Sbjct: 66 ECESCRQADKLMHPNIEYLFPVEAALLETIDPSKKENKKVAEARERYEALLDEKRKNPFF 125 Query: 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 P + ++T +++ ++ SL G +V +I D ++ AAN LLK LEEPP Sbjct: 126 TPTMERSMGILT-EQVVMLQQKASLAPRDGGKKVFIISQADRLHPTAANKLLKLLEEPPA 184 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 V+F+L+S ++L TIRSRC + F + + + +++R F+ + G Sbjct: 185 HVVFVLVSSRPESVLPTIRSRCQLLTFARPRPAEIEAWIARRAPQLDETERRFIVSLSRG 244 Query: 220 SVARAIKILHYDCDK 234 +++ A++++ + + Sbjct: 245 NLSSALELIEAETGE 259 >gi|307258490|ref|ZP_07540227.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306867394|gb|EFM99245.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 466 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 19/225 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 C+ +L + N+L L+Q I + + + AA GS+ Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSI 214 >gi|241663064|ref|YP_002981424.1| DNA polymerase III subunit delta' [Ralstonia pickettii 12D] gi|240865091|gb|ACS62752.1| DNA polymerase III, delta prime subunit [Ralstonia pickettii 12D] Length = 336 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 10/180 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQ------- 83 ++ HA+L G+ G GK +A +L P P C C+ F + Sbjct: 20 KLPHAILLNGQAGTGKRDFAMHFAQSLLCDTPTPDGQPCGTCAA--CNWFAQGNHPDFHL 77 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 + A+ D + K +I ++++R + + + + RV+++ P+D + Sbjct: 78 VRPEAMEDAPETEKDADGKKKAPSKIIRMEQVRNLIEGVGVGTHRAGLRVVVLYPLDALQ 137 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 ANALLK+LEEPPQ +F+L++ IL TI SRC + LEQ + Sbjct: 138 TEGANALLKTLEEPPQNTVFLLVTDRIDRILPTILSRCRQFPLQPPQPEAARQWLEQQGV 197 >gi|15642017|ref|NP_231649.1| DNA polymerase III subunit delta' [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590848|ref|ZP_01678173.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 2740-80] gi|121728856|ref|ZP_01681866.1| DNA polymerase III, delta prime subunit [Vibrio cholerae V52] gi|147674380|ref|YP_001217542.1| DNA polymerase III subunit delta' [Vibrio cholerae O395] gi|153819689|ref|ZP_01972356.1| DNA polymerase III, delta prime subunit [Vibrio cholerae NCTC 8457] gi|153822944|ref|ZP_01975611.1| DNA polymerase III, delta prime subunit [Vibrio cholerae B33] gi|227082142|ref|YP_002810693.1| DNA polymerase III, delta prime subunit [Vibrio cholerae M66-2] gi|229507896|ref|ZP_04397401.1| DNA polymerase III delta prime subunit [Vibrio cholerae BX 330286] gi|229511869|ref|ZP_04401348.1| DNA polymerase III delta prime subunit [Vibrio cholerae B33] gi|229519005|ref|ZP_04408448.1| DNA polymerase III delta prime subunit [Vibrio cholerae RC9] gi|229607441|ref|YP_002878089.1| DNA polymerase III subunit delta' [Vibrio cholerae MJ-1236] gi|254849102|ref|ZP_05238452.1| DNA polymerase III [Vibrio cholerae MO10] gi|255745236|ref|ZP_05419185.1| DNA polymerase III delta prime subunit [Vibrio cholera CIRS 101] gi|262148994|ref|ZP_06028140.1| DNA polymerase III delta prime subunit [Vibrio cholerae INDRE 91/1] gi|262167962|ref|ZP_06035662.1| DNA polymerase III delta prime subunit [Vibrio cholerae RC27] gi|298497955|ref|ZP_07007762.1| DNA polymerase III subunit delta' [Vibrio cholerae MAK 757] gi|9656559|gb|AAF95163.1| DNA polymerase III, delta prime subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547299|gb|EAX57419.1| DNA polymerase III, delta prime subunit [Vibrio cholerae 2740-80] gi|121628864|gb|EAX61322.1| DNA polymerase III, delta prime subunit [Vibrio cholerae V52] gi|126509755|gb|EAZ72349.1| DNA polymerase III, delta prime subunit [Vibrio cholerae NCTC 8457] gi|126519555|gb|EAZ76778.1| DNA polymerase III, delta prime subunit [Vibrio cholerae B33] gi|146316263|gb|ABQ20802.1| DNA polymerase III, delta prime subunit [Vibrio cholerae O395] gi|227010030|gb|ACP06242.1| DNA polymerase III, delta prime subunit [Vibrio cholerae M66-2] gi|227013912|gb|ACP10122.1| DNA polymerase III, delta prime subunit [Vibrio cholerae O395] gi|229343694|gb|EEO08669.1| DNA polymerase III delta prime subunit [Vibrio cholerae RC9] gi|229351834|gb|EEO16775.1| DNA polymerase III delta prime subunit [Vibrio cholerae B33] gi|229355401|gb|EEO20322.1| DNA polymerase III delta prime subunit [Vibrio cholerae BX 330286] gi|229370096|gb|ACQ60519.1| DNA polymerase III delta prime subunit [Vibrio cholerae MJ-1236] gi|254844807|gb|EET23221.1| DNA polymerase III [Vibrio cholerae MO10] gi|255737066|gb|EET92462.1| DNA polymerase III delta prime subunit [Vibrio cholera CIRS 101] gi|262023689|gb|EEY42390.1| DNA polymerase III delta prime subunit [Vibrio cholerae RC27] gi|262031226|gb|EEY49844.1| DNA polymerase III delta prime subunit [Vibrio cholerae INDRE 91/1] gi|297542288|gb|EFH78338.1| DNA polymerase III subunit delta' [Vibrio cholerae MAK 757] Length = 324 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQASEGVGVESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKIGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|16763864|ref|NP_459479.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990471|ref|ZP_02571571.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168465581|ref|ZP_02699463.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|20141409|sp|P74876|DPO3X_SALTY RecName: Full=DNA polymerase III subunit tau; Contains: RecName: Full=DNA polymerase III subunit gamma gi|16418992|gb|AAL19438.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195631598|gb|EDX50118.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205330903|gb|EDZ17667.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245766|emb|CBG23563.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992201|gb|ACY87086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157093|emb|CBW16577.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911516|dbj|BAJ35490.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226062|gb|EFX51113.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128803|gb|ADX16233.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 642 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|325689862|gb|EGD31866.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK115] Length = 556 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G + +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220 >gi|319793176|ref|YP_004154816.1| DNA polymerase iii, subunits gamma and tau [Variovorax paradoxus EPS] gi|315595639|gb|ADU36705.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus EPS] Length = 625 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 20/203 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R F P + G + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C + + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQ------ACRDIDSGRFVDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKAL 198 T+ SRCL ++ + + L Sbjct: 170 TVLSRCLQFNLRPMAPETILEHL 192 >gi|83815919|ref|YP_444991.1| putative DNA polymerase III, delta' subunit [Salinibacter ruber DSM 13855] gi|294506856|ref|YP_003570914.1| DNA polymerase III gamma/tau subunit [Salinibacter ruber M8] gi|83757313|gb|ABC45426.1| putative DNA polymerase III, delta' subunit [Salinibacter ruber DSM 13855] gi|294343184|emb|CBH23962.1| DNA polymerase III gamma/tau subunit [Salinibacter ruber M8] Length = 395 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 34/250 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS-------- 65 + E + + L + R+ HA L G G+GK + + A LQ P+ + Sbjct: 6 VLDQERVVQTLRRALTQERVAHAYLLHGPDGVGKRAVAYEMA-RALQCPEQADEACDACP 64 Query: 66 --KAPVRMCNPD-------PCSP--------FVKQMASHALHDFLYLSYSLNP------K 102 + RM +PD P S K++ + + + Y P + Sbjct: 65 TCRKTRRMVHPDVHVNLPHPWSQEKDRDEEDMGKRIRRLGDNPYAAIDYVRRPSLADPSE 124 Query: 103 TGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 T + +D++R+ I +SL G ++V ++ + M AAN LK LEEPP + Sbjct: 125 TSNQQVYYRIDQVRQDIIQPMSLARGEGAYKVNVLIDAEKMREEAANTFLKLLEEPPPQT 184 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +F+L ++ +L TI SRC ++F+ L + +AL + M D ++A GS Sbjct: 185 VFLLTTNRPEQLLPTILSRCQQLRFDPLLPETIEQALVDRENMAPDEASMLSRMAD-GSY 243 Query: 222 ARAIKILHYD 231 +RA+++ D Sbjct: 244 SRALELAEND 253 >gi|148543563|ref|YP_001270933.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri DSM 20016] gi|184152970|ref|YP_001841311.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri JCM 1112] gi|227363477|ref|ZP_03847599.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri MM2-3] gi|325681913|ref|ZP_08161431.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri MM4-1A] gi|148530597|gb|ABQ82596.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri DSM 20016] gi|183224314|dbj|BAG24831.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri JCM 1112] gi|227071491|gb|EEI09792.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri MM2-3] gi|324978557|gb|EGC15506.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri MM4-1A] Length = 611 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 29/241 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A V N Sbjct: 8 RVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ K + + L+D + + + N G V+EIR IR Sbjct: 66 HSK------DGEPCNECEICKAITNGQLNDVIEIDAASN--NG-------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFV-KIAAYGSVARAIKILHYDCDKII 236 F +S N + L+Q K+ +D K +V AA G + A+ IL D+++ Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKKVT-YDEKALWVIANAAEGGMRDALSIL----DQVL 225 Query: 237 S 237 S Sbjct: 226 S 226 >gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis m4-4] gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis m4-4] Length = 567 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + + L ++ HA LF G +G GK T + G + + Sbjct: 8 RVWRPQTFEDVVGQQHVTQTLQNALLQDKISHAYLFSGPRGTGK-TSAAKILGKAV---N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP+ +PC+ K + ++ D + + + N V+EIR IR Sbjct: 64 CERAPI----AEPCNECAACKGIMDGSIQDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPSAVRFKVYIIDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNL 194 F ++ ++ Sbjct: 171 QRFDFKRITPRDI 183 >gi|327461339|gb|EGF07670.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1] Length = 556 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIE 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G + +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220 >gi|260773141|ref|ZP_05882057.1| DNA polymerase III delta prime subunit [Vibrio metschnikovii CIP 69.14] gi|260612280|gb|EEX37483.1| DNA polymerase III delta prime subunit [Vibrio metschnikovii CIP 69.14] Length = 321 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K GK ITV++IR ++ +R+I+I+P + MN +AANALLK+LEEP +K Sbjct: 83 KEGK---SITVEQIRIANRLAQESSQLSGFRLIVIEPAEAMNESAANALLKTLEEPAEKC 139 Query: 162 LFILISHASPTILSTIRSRCLSI 184 +FIL++H +L+TI SRC I Sbjct: 140 VFILLTHQVSRLLATIVSRCQQI 162 >gi|253990862|ref|YP_003042218.1| DNA polymerase III subunits gamma and tau [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639197|emb|CAR67810.1| DNA polymerase III subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782312|emb|CAQ85476.1| DNA polymerase III subunit [Photorhabdus asymbiotica] Length = 658 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPQIFSNVIGQEHVLTALANGLAHDRLHHAYLFSGTRGVGKTTIARLFSKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 EIGITDKPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPTRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSK-RDFVKIAAYGSVARAIKI 227 + TI SRCL +L + LE++ + + DS+ R + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFHLKALDVAQISDQLERILKAEHLESDSRARQLLARAADGSMRDALSL 220 >gi|87122720|ref|ZP_01078595.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121] gi|86162017|gb|EAQ63307.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121] Length = 823 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 17 ELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAKCL-------NCETNGI 69 Query: 73 NPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +P+PC ++A D + + + K V++ R + + T G Sbjct: 70 SPEPCGTCGSCVEIAEGRFVDLIEVDAASRTK---------VEDTRELLENVQYTPTRGR 120 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SRCL ++S Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 181 PGRVVNYLEKV 191 >gi|309782346|ref|ZP_07677072.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] gi|308918882|gb|EFP64553.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] Length = 731 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 24/198 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPDFSKA 67 L G E + K L+ R+HHA LF G +G+GK TL G Q S Sbjct: 18 LVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCVGADGQG-GISAQ 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P +C C+ ++ + D++ + + N VDE+ ++ Sbjct: 77 PCGVCRA--CT----EIDAGRFVDYIEMDAASN---------RGVDEMAQLLDRAIYAPT 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SRCL Sbjct: 122 SGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 181 Query: 188 SLSENNLYKALEQLKIMG 205 + ++ L+ +I+G Sbjct: 182 QMPPGHIVSHLD--RILG 197 >gi|257461237|ref|ZP_05626334.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268] gi|257441265|gb|EEV16411.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268] Length = 763 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 17/197 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++L G + + K L+ SGR+ HA LF G +G GK + +A +L + + Sbjct: 8 YRPKSFEQLIGQDAVAKSLAHALDSGRLSHAYLFSGLRGSGKTSTARIFAKALLCDKGPT 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P +C D C MA+ H D + + + + K +D+IR + Sbjct: 68 GKPCEVC--DNCV-----MANEGRHIDIIEMDAASHRK---------IDDIRELIEQTKY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +++ +ID V + + A+NALLK+LEEPP V FIL + + T+ SR Sbjct: 112 HPASARFKIFIIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRTQHF 171 Query: 185 KFNSLSENNLYKALEQL 201 +F ++++ + L Q+ Sbjct: 172 RFKPIAKSAVVAHLAQI 188 >gi|163781581|ref|ZP_02176581.1| hypothetical protein HG1285_01823 [Hydrogenivirga sp. 128-5-R1-1] gi|159882801|gb|EDP76305.1| hypothetical protein HG1285_01823 [Hydrogenivirga sp. 128-5-R1-1] Length = 315 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 32/209 (15%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT--LGFRYAGHVLQNPDFSKAPVR 70 RL + + L + R LLF G G+GK T L F L+ ++ Sbjct: 2 RLRNQSAVRELLERIQKEKRYPGGLLFYGLSGVGKTTAALDFARGALCLEEKEWGCGSCS 61 Query: 71 MC---------------------NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 C + +K ++ DF+Y+ P G R Sbjct: 62 SCLHYDRVAEDILSGKWEGISLYDESDGKKILKYLSGEH-PDFIYVP----PYGGSLR-- 114 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +D+IR ++ F + + +V++++ M R A NALLK LEEPP LFILIS + Sbjct: 115 --IDQIRAVKDFAYMRPALSHRKVVVLEDSHTMTREAGNALLKVLEEPPSDTLFILISES 172 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TI SR ++F+ L E Y L Sbjct: 173 KDQLLPTIVSRTYQVEFHPLEEEVFYSLL 201 >gi|325126251|gb|ADY85581.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 606 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 41/283 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F S + + +E Q + D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDF 273 Y D + + +A Q +++++ LL+ D ++A D Sbjct: 227 FEKSSVRYEDALEVTG--FAAQEQVEKLLLALLNGDSQMALDL 267 >gi|237715199|ref|ZP_04545680.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237719573|ref|ZP_04550054.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405044|ref|ZP_06081594.1| DNA polymerase III, delta' subunit [Bacteroides sp. 2_1_22] gi|293371611|ref|ZP_06618022.1| putative DNA polymerase III, delta' subunit [Bacteroides ovatus SD CMC 3f] gi|294645133|ref|ZP_06722857.1| putative DNA polymerase III, delta' subunit [Bacteroides ovatus SD CC 2a] gi|294808710|ref|ZP_06767444.1| putative DNA polymerase III, delta' subunit [Bacteroides xylanisolvens SD CC 1b] gi|298482511|ref|ZP_07000697.1| DNA polymerase III delta prime subunit [Bacteroides sp. D22] gi|229444508|gb|EEO50299.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229450842|gb|EEO56633.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262355919|gb|EEZ05009.1| DNA polymerase III, delta' subunit [Bacteroides sp. 2_1_22] gi|292633308|gb|EFF51878.1| putative DNA polymerase III, delta' subunit [Bacteroides ovatus SD CMC 3f] gi|292639516|gb|EFF57810.1| putative DNA polymerase III, delta' subunit [Bacteroides ovatus SD CC 2a] gi|294444149|gb|EFG12882.1| putative DNA polymerase III, delta' subunit [Bacteroides xylanisolvens SD CC 1b] gi|298271490|gb|EFI13065.1| DNA polymerase III delta prime subunit [Bacteroides sp. D22] Length = 374 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 35/249 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVNEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGTCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHAL-HDFLYLSYSLNPKTGK- 105 L +PD F + C ++ + H + L++ L + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRPFVINHPYFNLNHWLGEMDAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 SQALIYAKESDEILKKLSLKSSEGGFKITIVWLPEKMHPVCANKLLKLLEEPPEKTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSVA 222 +S A IL TI SR + + E ++ + L+ + I+ DS + IA A G+ Sbjct: 186 VSEAPDMILPTILSRTQRMNVRKIDEASIDRVLQTKYNILPADS----ISIAHLANGNFI 241 Query: 223 RAIKILHYD 231 +A++ +H + Sbjct: 242 KALETIHLN 250 >gi|194289605|ref|YP_002005512.1| DNA polymerase III subunit delta' [Cupriavidus taiwanensis LMG 19424] gi|193223440|emb|CAQ69445.1| DNA POLYMERASE III, DELTA' SUBUNIT [Cupriavidus taiwanensis LMG 19424] Length = 335 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HALL G+QGIGK L +A G + + P P C C F + +H Sbjct: 19 RLPHALLIHGQQGIGKRDLALHFAQGLLCEAPLADGQPCGQCAA--CHWFSQ--GNHP-- 72 Query: 91 DFLY-----LSYSLNPKT---GKWRT---VITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 DF L S +T GK + +I ++++R + + + + RV+++ P+ Sbjct: 73 DFTVVRPEALDASAEAETDDGGKKKAPSKIIRMEQVRALIEAVGVGTHRAGLRVVVVYPL 132 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 D + ANALLK+LEEPP +F+L++ IL TI SRC Sbjct: 133 DALQAEGANALLKTLEEPPPSTVFLLVTDRLDRILPTILSRC 174 >gi|257438605|ref|ZP_05614360.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii A2-165] gi|257198949|gb|EEU97233.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii A2-165] Length = 625 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 21/199 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + I L +GR+ HA LF G +G GK T +A V +P Sbjct: 14 RKWRPQRFEDVVAQRGIVTALRNQIATGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCLHP 73 Query: 63 DFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N DPC + + + ++ D + + + N VD+IR +R Sbjct: 74 Q---------NGDPCGECEICRGIDNGSILDVVEMDAASN---------NGVDDIRDLRD 115 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T + +++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 116 ETAYTPSACHYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSR 175 Query: 181 CLSIKFNSLSENNLYKALE 199 C F + ++ + +E Sbjct: 176 CQRYDFTRIGPEDIAQRVE 194 >gi|240948992|ref|ZP_04753346.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor NM305] gi|240296579|gb|EER47197.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor NM305] Length = 698 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQTQIAHHLE 188 >gi|152991199|ref|YP_001356921.1| DNA polymerase III subunits gamma and tau [Nitratiruptor sp. SB155-2] gi|151423060|dbj|BAF70564.1| DNA polymerase III, gamma/tau subunits [Nitratiruptor sp. SB155-2] Length = 512 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 124/280 (44%), Gaps = 41/280 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + + L + + + HA LF G +G GK + ++ ++ + + Sbjct: 7 YRPKRFEDLIGQEAVTQTLQRALDTKNLSHAYLFSGLRGSGKTSTARIFSKALICDGGPT 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +P C + C Q A+ H D + + + N K +D+IR + Sbjct: 67 SSPCETC--ENC-----QAANEGRHIDIIEMDAASNRK---------IDDIRDLIEHTKY 110 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 111 KPSSARYKIFIIDEVHMLTKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHF 170 Query: 185 KFNSLSENNLYKALEQ-------------LKIM---GWDSKRDFVKI----AAYG----S 220 +F +++ ++ LE L+I+ G S RD + + +G S Sbjct: 171 RFKKIAQRDIVHHLEHILNLENVEYEPEALQILARSGSGSLRDTLTLLDQAITFGKNRVS 230 Query: 221 VARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIAD 260 V +L K I + D+I +E LQ +Q++ D Sbjct: 231 VEAVTNMLGLVDPKKIEALFDMILRQDKEAILQTVQELRD 270 >gi|313202632|ref|YP_004041289.1| DNA polymerase iii, tau subunit [Paludibacter propionicigenes WB4] gi|312441948|gb|ADQ78304.1| DNA polymerase III, tau subunit [Paludibacter propionicigenes WB4] Length = 584 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 22/202 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQN- 61 R + P + G + L S + HA LF G +G+GK T +A + QN Sbjct: 9 RKYRPSTFNSVVGQSSLTVTLKNAIKSNHLAHAYLFCGPRGVGKTTCARIFAKTINCQNL 68 Query: 62 -PDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 DF CN + C F +Q S+ +H+ S + VD+IR + Sbjct: 69 TSDF-----EACNECESCVSFNEQR-SYNIHELDAASNN------------GVDDIRSLT 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G + V +ID V +++ A NA LK+LEEPP +FIL + I+ TI S Sbjct: 111 DQVRIPPQIGKYSVYIIDEVHMLSQGAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC FN ++ + K L+ + Sbjct: 171 RCQIYDFNRITVADTVKHLQMV 192 >gi|258621220|ref|ZP_05716254.1| DNA polymerase III, delta prime subunit [Vibrio mimicus VM573] gi|258586608|gb|EEW11323.1| DNA polymerase III, delta prime subunit [Vibrio mimicus VM573] Length = 324 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L + +G+G +L + L + P C+ S + Q +H D Sbjct: 26 KISAATLIQAPEGVGAESL-VEHMARTLMCTSSNSEPCGFCH----SCGLMQAGNHP--D 78 Query: 92 FLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 F + + P K GK ITV++IR I ++ +R+I+++P D MN +AANAL Sbjct: 79 F----HVVKPEKVGK---SITVEQIRHINRVAQESSQLSGYRLIVVEPADAMNESAANAL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEP LFIL++ +L TI SRC Sbjct: 132 LKTLEEPAPDCLFILVTSRINHLLPTIVSRC 162 >gi|319947251|ref|ZP_08021484.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis ATCC 700641] gi|319746493|gb|EFV98753.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis ATCC 700641] Length = 558 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVIATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPNQKGG----- 69 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + + +L D + + + N VDEIR IR + + Sbjct: 70 --EPCNDCYICEAITNGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAP 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 + L+ L G D + + V I A G + A+ IL Sbjct: 179 TPAIQDHLKAVLDKEGIDYEEEAVAIIARRAEGGMRDALSIL 220 >gi|257465337|ref|ZP_05629708.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor 202] gi|257450997|gb|EEV25040.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor 202] Length = 694 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQTQIAHHLE 188 >gi|126667422|ref|ZP_01738394.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17] gi|126628178|gb|EAZ98803.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17] Length = 622 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L S R+HHA LF G +G+GK T+G A + Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALESQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + +TG VD++R + Sbjct: 65 ETGITAKPCGVCG------SCREIQEGRFVDLIEIDAAS--RTG-------VDDMRELTD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYSPTRGRFKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNL 194 CL ++ ++ Sbjct: 170 CLQFNLKRMTPEHI 183 >gi|270156731|ref|ZP_06185388.1| putative DNA polymerase III delta prime subunit [Legionella longbeachae D-4968] gi|269988756|gb|EEZ95010.1| putative DNA polymerase III delta prime subunit [Legionella longbeachae D-4968] Length = 304 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 24/176 (13%) Query: 21 EKFLSQY------YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 EK+L+Q+ + +GRM A+LF G R++ V F K + Sbjct: 9 EKYLAQWKQIQIAWKNGRMPQAMLFVGSLDCALIDFIRRFSKFV-----FCKMETK---- 59 Query: 75 DPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 PC + +MA A H D ++ K K I +D IR + + LT R Sbjct: 60 -PCGECIDCRMALCAEHPDLNWI------KPEKRGGSIKIDTIRELHDYSYLTPQRANHR 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +I+I+ + MN +AAN+LLK LEEP Q +LF+L++ T+L TI SRC + F S Sbjct: 113 LIVIESAERMNISAANSLLKILEEPAQHILFLLVAQQLSTVLPTILSRCQIMHFAS 168 >gi|253682734|ref|ZP_04863530.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str. 1873] gi|253561056|gb|EES90509.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str. 1873] Length = 541 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 25/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I L + R+ HA LF G +G GK + Sbjct: 8 REWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTA----------KI 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 FSKA V NP +PC+ K++ + D + + + K VD+IR + Sbjct: 58 FSKA-VNCLNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNK---------VDDIRDL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V ++D + + A NA LK+LEEPP+KV+FIL + + TI Sbjct: 108 IEEVKYPPREGKYKVYIMDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SRC F + +++++ L Sbjct: 168 SRCQRFDFKRIKSDDIFERL 187 >gi|161609280|ref|NP_887984.2| DNA polymerase III subunits gamma and tau [Bordetella bronchiseptica RB50] Length = 698 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA--CT----EIDAGRFVDYLELDAASN---------RGVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + + L+ + Sbjct: 170 CLQFNLKQMPPDAIVGHLQAV 190 >gi|194468110|ref|ZP_03074096.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri 100-23] gi|194452963|gb|EDX41861.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri 100-23] Length = 611 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A V N Sbjct: 8 RVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ K + + L+D + + + N G V+EIR IR Sbjct: 66 HSK------DGEPCNECEICKAITNGQLNDVIEIDAASN--NG-------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKALE---QLKIMGWDSKRDFV-KIAAYGSVARAIKILHYDCDKIIS 237 F +S + + ++ + K + +D K +V AA G + A+ IL D+++S Sbjct: 171 QRFDFRRISAEDAFDRMKYILEQKEVTYDEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|325105012|ref|YP_004274666.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] Length = 605 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + PV + + G I L S ++ A LF G +G+GK T A + QN Sbjct: 9 RKYRPVTFESVVGQLHITNTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCQNL 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +C + C+ F LH + + L+ + +VD+IR + + Sbjct: 69 TAQGEACGIC--ESCNSF--------LHGNSFNFHELDAASNN-----SVDDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++++A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQGGKYKVYIIDEVHMLSQSAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSL 189 FN + Sbjct: 174 IFDFNRI 180 >gi|297616261|ref|YP_003701420.1| DNA polymerase III delta prime subunit [Syntrophothermus lipocalidus DSM 12680] gi|297144098|gb|ADI00855.1| DNA polymerase III, delta prime subunit [Syntrophothermus lipocalidus DSM 12680] Length = 320 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 31/214 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV--RM 71 + G + FL G HA LF G GIGK +A +L+ + R Sbjct: 7 IVGQQKAVSFLQTVLQQGSPVHAYLFVGPPGIGKTRAATAFACSLLEAGAAAGGRTWERE 66 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PD L+++ GK + +++ E+RR+ +L+ + Sbjct: 67 NHPD-----------------LFVA-------GKTGSKVSITEVRRLEEWLAYHPYLSSY 102 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV + ++ AANALLK+LEEPP + +LIS + +L T+RSRC +KFN L Sbjct: 103 RVALFPDAHLLSMEAANALLKTLEEPPAYAVIVLISDEA-DVLPTVRSRCQEVKFNPLPV 161 Query: 192 NNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARA 224 L + L Q G D R A GS+ RA Sbjct: 162 PLLEQTLLQ---EGTDLVRAGLAARLARGSLKRA 192 >gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] Length = 484 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 17/202 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + + L R+ HA LF G +G+GK ++ R L Sbjct: 10 VLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMA-RILAKALN 68 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P C + +A + D L + + N +D+IR +R Sbjct: 69 CPHTQDGIPCGECE------VCQNIAVGSDVDVLEIDGASNRG---------IDDIRSLR 113 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ + +++ +ID V + + A NALLK+LEEPP V FI + + TI S Sbjct: 114 ANVNVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILS 173 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC F + EN++ L+Q+ Sbjct: 174 RCQRFDFGYIEENSICDRLKQI 195 >gi|139438753|ref|ZP_01772237.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC 25986] gi|133775833|gb|EBA39653.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC 25986] Length = 825 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 12/194 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNP 62 R + P+ + G + I L GR+ HA LF G +G GK T+ A +L +N Sbjct: 6 RKYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALLCRNA 65 Query: 63 DFSKAP-VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + ++A C PD + +A D L + +TG VD +R I Sbjct: 66 EAARAEGASGCLPDGACEECELIAEGNHPDVYELDAAS--RTG-------VDNVREEIIN 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +++ +ID V + A NALLK+LEEPP V+F+L + IL TI SR Sbjct: 117 SVNFAPVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSR 176 Query: 181 CLSIKFNSLSENNL 194 C F+ + ++ Sbjct: 177 CQRFDFHRIGNEDI 190 >gi|89900250|ref|YP_522721.1| DNA polymerase III subunits gamma and tau [Rhodoferax ferrireducens T118] gi|89344987|gb|ABD69190.1| DNA polymerase III, subunits gamma and tau [Rhodoferax ferrireducens T118] Length = 647 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 28/246 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G + + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQDHVVQALTNALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q PD + P +C C + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA--CI----DIDSGRFVDYTELDAASNRG---------VDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + +A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QALLEQAVYKPVQGRFKVFMIDEVHMLTGHAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L+ + K+ + AA+GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPIAPETIREHLQTVLQAEKVAADVPSLRLLARAAHGSMRDALSL---- 225 Query: 232 CDKIIS 237 D+ IS Sbjct: 226 ADQAIS 231 >gi|33152827|ref|NP_874180.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] gi|33149052|gb|AAP96569.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] Length = 687 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L ++HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVIGQQHVLSALENGLRQDKLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 ETSITATPCGKC--ENC----KAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L+ L + LE Sbjct: 170 CMQFHLRALTPTQLSQHLE 188 >gi|313681672|ref|YP_004059410.1| DNA polymerase iii, tau subunit [Sulfuricurvum kujiense DSM 16994] gi|313154532|gb|ADR33210.1| DNA polymerase III, tau subunit [Sulfuricurvum kujiense DSM 16994] Length = 549 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 17/197 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E I + LS S R+ HA LF G +G GK + +A ++ + Sbjct: 11 YRPRRFEELIGQESISQTLSLALDSKRLSHAYLFSGLRGSGKTSTARIFAKSLICENGPT 70 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 AP D CS V MA+ H D + + + + K +D+IR + Sbjct: 71 SAPC-----DVCSHCV--MANEGRHIDIIEMDAASSRK---------IDDIRDLIEHTKY 114 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + ++ +ID V + + A NALLK+LEEPP+ V FIL + + TI SR Sbjct: 115 RPASANVKIFIIDEVHMLTKEAHNALLKTLEEPPEYVKFILATTDPLKLPPTILSRTQHF 174 Query: 185 KFNSLSENNLYKALEQL 201 +F +S N+ L + Sbjct: 175 RFKRISHPNIVHHLSHI 191 >gi|260550098|ref|ZP_05824312.1| ATPase [Acinetobacter sp. RUH2624] gi|260406853|gb|EEX00332.1| ATPase [Acinetobacter sp. RUH2624] Length = 326 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRVI+I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVIVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|327489199|gb|EGF20992.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1058] gi|328946036|gb|EGG40182.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1087] Length = 556 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G + + L Q G++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ +E L+ G + +++ V+I A G + A+ IL Sbjct: 179 TQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220 >gi|168818899|ref|ZP_02830899.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344020|gb|EDZ30784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 642 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRCVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE + Sbjct: 170 CLQFHLKALDVEQIRHQLEHI 190 >gi|260913251|ref|ZP_05919733.1| DNA-directed DNA polymerase III subunit delta' [Pasteurella dagmatis ATCC 43325] gi|260632838|gb|EEX51007.1| DNA-directed DNA polymerase III subunit delta' [Pasteurella dagmatis ATCC 43325] Length = 326 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 17/159 (10%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G HHALLF+ +QG+G L GH L QNP + P C+ +H Sbjct: 21 GHGHHALLFKADQGLGTDQL-LDALGHWLMCQNPQ-DQQPCGQCH------HCHLTQAHN 72 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D Y L P K I VD++R I ++ A G ++I + VD + AAN Sbjct: 73 HPDI----YQLAPIENK---DIGVDQVREINEKINQHAQQGGNKIIYVRGVDRLTEAAAN 125 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 A+LK+LEEP F+L + S ++ TI SRC + N Sbjct: 126 AMLKTLEEPRPNTYFLLQTDISSPVMPTIYSRCQAQTIN 164 >gi|257126791|ref|YP_003164905.1| DNA polymerase III subunits gamma and tau [Leptotrichia buccalis C-1013-b] gi|257050730|gb|ACV39914.1| DNA polymerase III, subunits gamma and tau [Leptotrichia buccalis C-1013-b] Length = 524 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G E + + + ++ HA LF G +G+GK T+ A V L + Sbjct: 7 RKYRPQNFDEIAGQEFVLRAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAKGVNCLNS 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P C + C ++++ D + + + N +DEIR ++ Sbjct: 67 ENVTDNPCGEC--ENC----REISQGISMDMIEIDAASNR---------GIDEIRELKEK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++ +ID V + + A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 112 INYQPVKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVISRC 171 >gi|226330524|ref|ZP_03806042.1| hypothetical protein PROPEN_04442 [Proteus penneri ATCC 35198] gi|225201319|gb|EEG83673.1| hypothetical protein PROPEN_04442 [Proteus penneri ATCC 35198] Length = 328 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y GR HHALL +G+G L + + ++ QN + ++ CN C + M + Sbjct: 18 YQEGRGHHALLLHAIEGMGGEALSYGLSRWLMCQN----RQGLKSCNE--CHS-CRLMLA 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D+ L ++ K ++ I ++ +R++ L A +RV+ I V+ + A Sbjct: 71 ETHPDWHIL------QSEKGKSSIGIEAVRKVTEKLEHHAQQSGFRVVWIKDVEALTEAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F+L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPKDTYFLLNCQHPEVLLATLRSRC 159 >gi|330975207|gb|EGH75273.1| DNA polymerase III subunit delta' [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 238 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%) Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R + F+ TA G +V++++PV+ MN NAANALLKSLEEP + +L+SH +L Sbjct: 1 MRDLVSFVVQTAQMGGRKVVLVEPVEAMNTNAANALLKSLEEPSGNTVLLLVSHQPSRLL 60 Query: 175 STIRSRCL 182 T++SRC+ Sbjct: 61 PTVKSRCV 68 >gi|314935108|ref|ZP_07842467.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae C87] gi|313653038|gb|EFS16801.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae C87] Length = 568 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 27/233 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 67 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ K + D + + + N VDEIR IR Sbjct: 68 DD----------GEPCNECAICKGITQGTNSDVIEIDAASNN---------GVDEIRNIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI S Sbjct: 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIIS 168 Query: 180 RCLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 R F ++S + + L+ + + + +D+ +F+ + G + A+ I+ Sbjct: 169 RAQRFDFKAISMDQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIM 221 >gi|326404392|ref|YP_004284474.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum AIU301] gi|325051254|dbj|BAJ81592.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum AIU301] Length = 614 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 113/279 (40%), Gaps = 34/279 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G + + + L + R+ HA + G +G+GK T R L Sbjct: 48 RKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTA-RILARALNCTG 106 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P PDPC +A A D + + + N R +I E R R Sbjct: 107 ADGQGGP----TPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREII---EATRFR 159 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ T +V ++D V ++RNA NALLK+LEEPP V F+ + + T+ S Sbjct: 160 PMIART------KVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLS 213 Query: 180 RCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L + E+ + D V AA GSV + +L D+ Sbjct: 214 RCQRFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLL----DQA 269 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I+ E A + +AD L D+ + FD L Sbjct: 270 IARA--------DEGAPVTAELVADMLGLADRGMVFDLL 300 >gi|17546504|ref|NP_519906.1| DNA polymerase III subunit delta' [Ralstonia solanacearum GMI1000] gi|17428802|emb|CAD15487.1| probable dna polymerase III (delta' subunit) protein [Ralstonia solanacearum GMI1000] Length = 336 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 19 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPTADGRPCQTCAA--CNWFAQGNHPDFH 76 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ D K +I ++++R++ + + + RV+++ P+D + Sbjct: 77 LVRPEAMEDSPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLDAL 136 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 137 QTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRC 175 >gi|313680933|ref|YP_004058672.1| DNA polymerase III subunits gamma/tau [Oceanithermus profundus DSM 14977] gi|313153648|gb|ADR37499.1| DNA polymerase III, subunits gamma and tau [Oceanithermus profundus DSM 14977] Length = 615 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 19/247 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + G E ++ L R+ HA LF G +G+GK T A V + Sbjct: 13 PATFDAVVGQEHVKDVLKSAIQKDRLAHAYLFSGPRGVGKTTTARLIAMSVGCAAEPENR 72 Query: 68 PVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C + C +M H D + + + N +V+++R +R + L Sbjct: 73 PCGEC--ENC-----RMVREDRHPDVVEIDAASN---------NSVEDVRELRERILLAP 116 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +VI++D M+++A NALLK+LEEPP+ V+FI + + +TI SR +F Sbjct: 117 LVAPRKVIILDEAHMMSKSAFNALLKTLEEPPEHVIFIFATTEPERMPATILSRTQHFRF 176 Query: 187 NSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 LSE + L L+ G ++ + +++ A S A++ D++++ +D I Sbjct: 177 RRLSEEEIAGKLAAVLEAEGRRAEPEALRLIARMSGG-AMRDAESILDRLLALDVDPITR 235 Query: 246 PRQEYAL 252 E AL Sbjct: 236 QAAEEAL 242 >gi|104774441|ref|YP_619421.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423522|emb|CAI98424.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 607 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 41/283 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F S + + +E Q + D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQ-KMQQIADELLSQDQKIAFDF 273 Y D + + +A Q +++++ LL+ D ++A D Sbjct: 227 FEKSSVRYEDALEVTG--FAAQEQVEKLLLALLNGDSQMALDL 267 >gi|293608257|ref|ZP_06690560.1| DNA polymerase III [Acinetobacter sp. SH024] gi|292828830|gb|EFF87192.1| DNA polymerase III [Acinetobacter sp. SH024] Length = 326 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK ++ VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKQFLAWVLC---LNKQPQGPCGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRVI+I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVIVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] Length = 357 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T Sbjct: 9 RKYRPQTFKDVVGQQAITNTLLNAIETNHLAQALLFTGPRGVGKTT-------------- 54 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C+ + + + +D Y +S N + VD+IR I + Sbjct: 55 -------------CARILARKINQEGYDDPYEDFSFNVFELDAASNNGVDDIRSIIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V ++ +A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQTGKYKVYIIDEVHMLSTSAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +N+L + + + D + A G++ A+ I D+++S Sbjct: 162 FDFKRITIKDAKNHLAEIANEQGVTFEDDALHIIAQKADGAMRDALSIF----DRVVS 215 >gi|307262856|ref|ZP_07544480.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871761|gb|EFN03481.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 466 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|229495419|ref|ZP_04389154.1| DNA polymerase III, subunit gamma and tau [Porphyromonas endodontalis ATCC 35406] gi|229317862|gb|EEN83760.1| DNA polymerase III, subunit gamma and tau [Porphyromonas endodontalis ATCC 35406] Length = 594 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 25/243 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R F P + L G E + + L + + HA LF G +G+GK + +A + +P Sbjct: 10 RKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIFARAINCASP 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 S C D C F +Q + + F + S N + ++IR++ + Sbjct: 70 LASGEACGEC--DSCRAFAEQ---RSFNVFEMDAASNN----------SANDIRQLIEEV 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++ G +++ +ID V ++ A NA LK+LEEPP+ V+FI+ + IL TI SRC Sbjct: 115 NIPPQVGRYKIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQ 174 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + + L + +I + + + A G + A+ + I+S Sbjct: 175 VFDFKPIPSDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDR-----IAS 229 Query: 239 YID 241 Y D Sbjct: 230 YTD 232 >gi|119357453|ref|YP_912097.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeobacteroides DSM 266] gi|119354802|gb|ABL65673.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeobacteroides DSM 266] Length = 397 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 25/250 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 +I R + P + E I + + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRLGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 59 ---LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 ++ D+ + +PC + DF SLN + +VD+I Sbjct: 65 IKMTEDKDYLQHVT-----EPCG------ECESCRDF-EAGTSLNIAEFDAASNNSVDDI 112 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R + G +RV +ID V ++ A NA LK+LEEPP +FI + I + Sbjct: 113 RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 TI SRC F + N + L Q+ +I + A GS+ A IL Sbjct: 173 TIASRCQRFNFKRIPLNAIEAQLLQICVAEQIAVEADALQLIGRKAQGSMRDAQSIL--- 229 Query: 232 CDKIISSYID 241 D++I+ +D Sbjct: 230 -DQVIAFSVD 238 >gi|165975723|ref|YP_001651316.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307245079|ref|ZP_07527172.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254034|ref|ZP_07535881.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|165875824|gb|ABY68872.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306853968|gb|EFM86180.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862959|gb|EFM94906.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 688 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 19/225 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECA------NCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 C+ +L + N+L L+Q I + + + AA GS+ Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSI 214 >gi|33568023|emb|CAE31936.1| DNA polymerase III subunit Tau [Bordetella bronchiseptica RB50] Length = 743 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 50 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 109 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D+L L + N V+E+ ++ Sbjct: 110 ENGITSKPCGQCRA--CT----EIDAGRFVDYLELDAASN---------RGVEEMTQLLE 154 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 155 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 214 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + + L+ + Sbjct: 215 CLQFNLKQMPPDAIVGHLQAV 235 >gi|227545161|ref|ZP_03975210.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300909166|ref|ZP_07126627.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri SD2112] gi|227184893|gb|EEI64964.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300893031|gb|EFK86390.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri SD2112] Length = 611 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A V N Sbjct: 8 RVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ K + + L+D + + + N G V+EIR IR Sbjct: 66 HSK------DGEPCNECEICKAITNGQLNDVIEIDAASN--NG-------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFV-KIAAYGSVARAIKILHYDCDKIIS 237 F +S + + ++ + K + +D K +V AA G + A+ IL D+++S Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|39939103|ref|NP_950869.1| DNA polymerase III, gamma/tau subunit [Onion yellows phytoplasma OY-M] gi|39722212|dbj|BAD04702.1| DNA polymerase III, gamma/tau subunit [Onion yellows phytoplasma OY-M] Length = 482 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 22/173 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHV---LQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 +++H LF G +G GK TL +A + L N D C + H Sbjct: 22 KINHCYLFSGNKGTGKTTLAKIFAKAINCLLPNQG-----------DVC------FSCHY 64 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 +F + + G VDEIR ++ A+TG ++V +ID V + NA N Sbjct: 65 CQNFTKANTDITEIDGASYN--GVDEIRELQDKAQYKAHTGKYKVYIIDEVHVLTPNAFN 122 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ALLK LEEPP+ V+FILI+ I TI SR S F +L+ N+ L ++ Sbjct: 123 ALLKILEEPPEHVVFILITTEIYKIPDTIFSRAQSFAFENLNLKNITAQLTKI 175 >gi|112944293|gb|ABI26342.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri] Length = 611 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A V N Sbjct: 8 RVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK + +PC+ K + + L+D + + + N G V+EIR IR Sbjct: 66 HSK------DGEPCNECEICKAITNGQLNDVIEIDAASN--NG-------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFV-KIAAYGSVARAIKILHYDCDKIIS 237 F +S + + ++ + K + +D K +V AA G + A+ IL D+++S Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|33595893|ref|NP_883536.1| DNA polymerase III subunits gamma and tau [Bordetella parapertussis 12822] gi|33565972|emb|CAE36523.1| DNA polymerase III subunit Tau [Bordetella parapertussis] Length = 708 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C C+ ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA--CT----EIDAGRFVDYLELDAASN---------RGVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + + + L+ + Sbjct: 170 CLQFNLKQMPPDAIVGHLQAV 190 >gi|330897699|gb|EGH29118.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. japonica str. M301072PT] Length = 232 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILPTTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ + + L + Sbjct: 170 CLQFSLKKMTPERVVEHLTHV 190 >gi|311748354|ref|ZP_07722139.1| DNA polymerase III [Algoriphagus sp. PR1] gi|311302776|gb|EAZ81111.2| DNA polymerase III [Algoriphagus sp. PR1] Length = 382 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 26/273 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G E I L + + A LF G +G+GK T A + +N Sbjct: 10 RKYRPADFKSVVGQEHITTTLKNAIKNNHLAQAFLFCGPRGVGKTTCARILAKTINCENR 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + C + C F K +S + Y L+ + +VD+IR + + Sbjct: 70 QDDQEACGEC--ESCVSF-KNNSSFNI-------YELDAASNN-----SVDDIRNLVDQV 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 115 RYAPQKGQYKVYIIDEVHMLSNQAFNAFLKTLEEPPKYAIFILATTEKHKIIPTILSRCQ 174 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCDK 234 FN + N+L E+ + + + A G++ A+ I+ Y K Sbjct: 175 IFDFNRIQIDHISNHLKYIAEKESVDFEEEALRLIATKADGALRDALSIFDLIVTYSAGK 234 Query: 235 IISSY--IDLIHIPRQEYALQKMQQIADELLSQ 265 ++ + ID +HI +Y + + + +E LS+ Sbjct: 235 KVTYHETIDNLHILDYDYYFKVVDALIEEDLSK 267 >gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 607 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 24/198 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE 199 F S + + +E Sbjct: 171 QRYNFKRFSNEAMVQRME 188 >gi|227484858|ref|ZP_03915174.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227237218|gb|EEI87233.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 560 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 34/286 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ G + + L + HA LF GE+G GK + A + Sbjct: 7 RQYRPKVFEQVLGQDKVINVLKNQIKNKNFSHAYLFAGERGCGKTS-----AAKI----- 56 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 F+KA + NP SP ++ A+ + L R +D+IR +R + Sbjct: 57 FAKA-INCLNPKDGSPCLECENCRAIEEETSLDVVEMDAASNRR----IDDIRNLRDNVI 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID + R A NALLK +EEPP+ ++FIL + I TI SR Sbjct: 112 YPPANLKYKVYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRVQK 171 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKR-------DFVKIAAYGSVARAIKILHYDCDKII 236 +FN + + K EQ+ I+ D D + A G++ A+ IL D+++ Sbjct: 172 FEFNKIDSS---KIKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSIL----DQVL 224 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 S + E+ L +K+ ++ ++ +DQ+ + + L++ Sbjct: 225 SFNKKEFMLKDVEFILGSVGFEKINKLVTSIIVKDQRQSLNDLLDI 270 >gi|193077193|gb|ABO11985.2| DNA polymerase III delta prime subunit [Acinetobacter baumannii ATCC 17978] Length = 311 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C ++K +H Y Sbjct: 14 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGECSSCQWLKS-DTHPN----Y 65 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + + + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 66 VHITTDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 123 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 124 EEPGERVVLILLADHYLKLPATIRSR 149 >gi|330444347|ref|YP_004377333.1| DNA polymerase III subunit gamma [Chlamydophila pecorum E58] gi|328807457|gb|AEB41630.1| DNA polymerase III, gamma subunit [Chlamydophila pecorum E58] Length = 441 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 23/224 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQ- 60 R + P + + G + L R+ HA LF G +G GK TL F A + L+ Sbjct: 11 RKYRPQAFKEILGQSAVVTVLKNALLLKRVGHAYLFSGIRGTGKTTLARIFAKALNCLKL 70 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ P +C C K+++S + D + + R + ++IR+I Sbjct: 71 SPE--GEPCNVCAS--C----KEISSGSSLDVIEID------GASHRGI---EDIRQINE 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T +R+ +ID V + + A NALLK+LEEPPQ V+F L + + +TI SR Sbjct: 114 TVIFTPAKSAYRIYIIDEVHMLTKEAFNALLKTLEEPPQHVIFFLATTEIHKVPNTILSR 173 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 C + N + + + +E+L M D+ A +ARA Sbjct: 174 CQKLHLNRIPDATI---VEKLFAMVQDTPTLQASKEALLPIARA 214 >gi|304414791|ref|ZP_07395750.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella insecticola LSR1] gi|304283143|gb|EFL91556.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella insecticola LSR1] Length = 655 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA L G +G+GK ++ A + Sbjct: 5 VLARKWRPQVFSAVVGQQHVLTALANGLLLGRLHHAYLLSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + P C C +++ D + + + K R ++ + +R Sbjct: 65 DKEITATPCGKC--ISC----QEIEQGRFIDLIEIDAASRTKVEDTRELLDNVQYAPVR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R++ NALLK+LEEPP V FIL + + T+ SR Sbjct: 118 --------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFILATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 CL +L+ + LE Q + + +DS+ + AA GS+ A+ + Sbjct: 170 CLQFHLQALNIEQIRTQLEKVLQAEQVAYDSRALHLLAKAADGSLRDALSL 220 >gi|225011952|ref|ZP_03702390.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium MS024-2A] gi|225004455|gb|EEG42427.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium MS024-2A] Length = 358 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 28/198 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E I K L S ++ ALLF G +G+GK + Sbjct: 11 YRPTSFEEVVGQESITKTLQNSLDSNQLAQALLFCGPRGVGKTSCA-------------- 56 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 R+ S + ++ + F + S N +V++IR+I + + Sbjct: 57 ----RILAKKINSATTAEDGDYSFNIFELDAASNN----------SVEDIRKINDQVRIP 102 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G ++ +ID ++ NA NA LK+LEEPP+ V+FIL + I+ T+ SRC Sbjct: 103 PQVGSHKIYIIDEAHMLSANAFNAFLKTLEEPPKHVIFILATTEKNKIIPTVLSRCQVYD 162 Query: 186 FNSLSENNLYKALEQLKI 203 F ++ ++ K LE++ I Sbjct: 163 FKRIAVQDIQKYLEKIAI 180 >gi|307260724|ref|ZP_07542413.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869563|gb|EFN01351.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 466 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|303249577|ref|ZP_07335784.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251796|ref|ZP_07533698.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651651|gb|EFL81800.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860703|gb|EFM92714.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 685 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|207743469|ref|YP_002259861.1| dna polymerase III subunit gamma/tau (n-terminal fragment) protein [Ralstonia solanacearum IPO1609] gi|206594866|emb|CAQ61793.1| probable dna polymerase III subunit gamma/tau (n-terminal fragment) protein [Ralstonia solanacearum IPO1609] Length = 596 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 34/219 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 56 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 115 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 116 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASN--------- 154 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 155 RGVDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 214 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 I T+ SRCL + ++ L+ +I+G + Sbjct: 215 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLD--RILGEEG 251 >gi|261855382|ref|YP_003262665.1| DNA polymerase III subunits gamma/tau [Halothiobacillus neapolitanus c2] gi|261835851|gb|ACX95618.1| DNA polymerase III, subunits gamma and tau [Halothiobacillus neapolitanus c2] Length = 591 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKSFAEMVGQGHVLQALTNALDQSRLHHAYLFTGTRGVGKTTVARIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ ++ D + + + +TG VD+ R + Sbjct: 65 EHGISSTPCGVCS------ACVEIDQGRFVDLIEVDAA--SRTG-------VDDTRDLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +++ +ID V ++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVAYAPVRGRFKIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +L + +L L++ I + + AA GS+ A+ +L Sbjct: 170 CLQFNLRALPLSQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLL 221 >gi|88705062|ref|ZP_01102774.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis KT71] gi|88700757|gb|EAQ97864.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis KT71] Length = 555 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPATFDALVGQEHVLQALRHALDSNRLHHAYLFTGTRGVGKTTIARILARSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S AP C CS V+ ++ D + + + K V++ R + Sbjct: 65 EKGVSAAP---CGE--CSSCVEISEGRSV-DLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRFKVYLIDEVHMLSGHSFNALLKTLEEPPEHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFNLKNMSAQRVVEHL 187 >gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 607 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 24/198 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ +A+ A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE 199 F S + + +E Sbjct: 171 QRYNFKRFSNEAMVQRME 188 >gi|148238398|ref|YP_001223785.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803] gi|147846937|emb|CAK22488.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803] Length = 621 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 30/223 (13%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P++++ +L G E I L SGR+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L N S+ P P+PC +A+ D + + + N TG V Sbjct: 60 LARSL-NCLNSEGP----TPEPCGHCELCTTIAAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 +L TI SRC F + +ALE + + W ++++ + I Sbjct: 166 VLPTILSRCQRFDFRRIP----LEALE--RHLTWIAEQETIPI 202 >gi|160900335|ref|YP_001565917.1| DNA polymerase III subunits gamma and tau [Delftia acidovorans SPH-1] gi|160365919|gb|ABX37532.1| DNA polymerase III, subunits gamma and tau [Delftia acidovorans SPH-1] Length = 731 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 24/236 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q D + P +C C+ ++ S D+ L + N VDE+ Sbjct: 65 QGADGQGGITATPCGVCAA--CT----EIDSGRFPDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKI 227 T+ SRCL ++ + + L Q L G S+ +++ AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLGQVLGQEGVASEPQALRLLSRAARGSMRDALSL 225 >gi|327438120|dbj|BAK14485.1| DNA polymerase III, gamma/tau subunits [Solibacillus silvestris StLB046] Length = 583 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 28/214 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + + Sbjct: 8 RVYRPQSFREMSGQTHVKRTLQNALLASKTTHAYLFSGPRGTGKTSTAKIFAKAL----N 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ P + + D + + N + + R D I ++R+ Sbjct: 64 CENAPAS----EPCNECPTCLSITEGSHTDVIEFDAASNSRVEEMR-----DIIEKVRF- 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ +A NALLK+LEEPP+ +FIL + + +TI SRC Sbjct: 114 ---APANARFKVYIIDEVHMLSTSAFNALLKTLEEPPEHAVFILATTEPHKLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKI------MGWDSK 209 F LS ++ +E++K+ MG+D + Sbjct: 171 QRFDFKRLSSIDI---VERMKVVLEDIGMGYDEQ 201 >gi|323153510|gb|EFZ39764.1| DNA polymerase III, subunits gamma and tau [Escherichia coli EPECa14] Length = 297 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K R D + ++Y G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTKVEDTR-----DLLDNVQY----APARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|229521927|ref|ZP_04411344.1| DNA polymerase III delta prime subunit [Vibrio cholerae TM 11079-80] gi|229340852|gb|EEO05857.1| DNA polymerase III delta prime subunit [Vibrio cholerae TM 11079-80] Length = 324 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQAPEGLGVESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|229524025|ref|ZP_04413430.1| DNA polymerase III delta prime subunit [Vibrio cholerae bv. albensis VL426] gi|229337606|gb|EEO02623.1| DNA polymerase III delta prime subunit [Vibrio cholerae bv. albensis VL426] Length = 324 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQAPEGLGVESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++AN Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSAN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|119356423|ref|YP_911067.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides DSM 266] gi|119353772|gb|ABL64643.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides DSM 266] Length = 388 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 31/212 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF--------RYAGHVLQNPDFS 65 + GH+ K L + +GR+ HA LF G + GK ++ F R A V + + Sbjct: 6 IIGHKQQIKVLQKALETGRLAHAYLFTGPEACGKESVAFELARILNCRTADPVSGSCETC 65 Query: 66 KA----------------PVRMCNPDPCSPFVKQ----MASHALHDFLYLSYSLNP--KT 103 K PV DP K+ + +D L NP Sbjct: 66 KECISLNAFMHPNVEYIFPVESALLDPGDTAKKENKRFTEAKERYDLLLEEKKQNPFFSP 125 Query: 104 GKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 R++ I +++ +++ S + G ++ ++ + ++ +AAN LLK LEEPP +L Sbjct: 126 AMERSMGILTEQVIALQHKASFMPSQGTRKIFILSQAEKLHPSAANKLLKLLEEPPAHIL 185 Query: 163 FILISHASPTILSTIRSRCLSIKFNSLSENNL 194 FIL+S +L TIRSRC I+F+ +S L Sbjct: 186 FILVSSRPEAVLPTIRSRCQVIRFSRVSSREL 217 >gi|117619310|ref|YP_856781.1| DNA polymerase III, delta' subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560717|gb|ABK37665.1| DNA polymerase III, delta' subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 315 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 76/162 (46%), Gaps = 22/162 (13%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPFVK 82 LSQ +GR+ HA L G+ G+GK L + A H+ P+ + P C+ C F K Sbjct: 12 LSQTAAAGRLGHAWLLLGDPGLGKEQLAEQLARLHLCHRPERGE-PCGQCHS--CQLFEK 68 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRT---VITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +P G T I V+ IR I L +A G +V++I Sbjct: 69 ---------------GHHPDLGTLTTESKTIGVEAIREICSRLQNSAQLGRGKVVIIPDA 113 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + M +AANALLK+LEEP L +LI+ +L TI SRC Sbjct: 114 ERMTESAANALLKTLEEPAGDSLLLLIASQVSRLLPTILSRC 155 >gi|78188902|ref|YP_379240.1| ATPase [Chlorobium chlorochromatii CaD3] gi|78171101|gb|ABB28197.1| ATPase [Chlorobium chlorochromatii CaD3] Length = 396 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 7/201 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E + + + SGR+ H +F G +G+GK T +A + Sbjct: 5 VIARKYRPAKFSDITAQEHVTRTIQNALRSGRIGHGYIFSGLRGVGKTTAARIFARALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 A +PC + DF S+N + VD+IR +R Sbjct: 65 QKLIDDADYLQQVTEPCG------ECESCRDF-DAGTSMNISEFDAASNNGVDDIRTLRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +RV +ID V ++ A NA LK+LEEPP +FI + I TI SR Sbjct: 118 NVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPPTISSR 177 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + + L+Q+ Sbjct: 178 CQRFNFKRIPLEAIQQQLQQI 198 >gi|262200018|ref|YP_003271227.1| DNA polymerase III subunits gamma/tau [Haliangium ochraceum DSM 14365] gi|262083365|gb|ACY19334.1| DNA polymerase III, subunits gamma and tau [Haliangium ochraceum DSM 14365] Length = 649 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/319 (24%), Positives = 140/319 (43%), Gaps = 44/319 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ + R+HHA LF G +G+GK T R G L Sbjct: 5 VLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVHHAFLFCGPRGVGKTTAA-RILGKAL- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + + P +PC V + + + D+ + + N +D IR + Sbjct: 63 --NCERGP----TAEPCGSCVACETITNGTAVDYFEMDGASNRG---------IDAIREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + +V +ID V + A NALLK+LEEPP V F+L + + +TI Sbjct: 108 TEAVRYQPAVLRKKVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTIL 167 Query: 179 SRCLSIKFNSLSENNLYK------ALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYD 231 SRC F + L + A E++++ DS + + GSV ++ + Sbjct: 168 SRCQRYDFKLVPAPKLIEHLRRIFAAEEIEV---DSGAISLIVRESGGSVRDSLSL---- 220 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 CD++I SY+ +I + A ++ +AD L++ L+ + + KSA A Sbjct: 221 CDQVI-SYVGTSNIGESDVA--EVLGVADRSLTR-------TLVSALAEGDAKSALEAVE 270 Query: 292 SGQLEEADQIAQIYFSLVK 310 + D++ Q+ ++V+ Sbjct: 271 AADARGVDEV-QLARAIVR 288 >gi|312792713|ref|YP_004025636.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179853|gb|ADQ40023.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor kristjanssonii 177R1B] Length = 534 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + E I K L ++ HA +F G +G GK T Sbjct: 7 RKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 57 MSRA-VNCLNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNT---------SVNDVRQI 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI Sbjct: 107 RDEVRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 167 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 221 >gi|256820706|ref|YP_003141985.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] gi|256582289|gb|ACU93424.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] Length = 569 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A + + Sbjct: 9 RKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILAKKINE--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +DF + + L+ + +VD+IR++ + Sbjct: 66 ------------------QTSGVEDENDFAFNVFELDAASNN-----SVDDIRKLIEQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 103 IPPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ N++ + L EQ I D + A G++ A+ I D+++S Sbjct: 163 FDFKRITINDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIF----DRVVS 216 >gi|312880003|ref|ZP_07739803.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans DSM 12260] gi|310783294|gb|EFQ23692.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans DSM 12260] Length = 618 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E + + L + GR HA LF G +G GK + A + +P Sbjct: 7 RRYRPSCFSEIVGQEGVVEALLRSLQEGRASHAYLFSGPRGCGKTSAARLVAKRLNCASP 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C P +A+ D + + + N ++EIR ++ + Sbjct: 67 APGGESCGQC------PSCLALAAGEHMDVVEIDGASN---------RGIEEIRELKSHV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 SL +V +ID V + A NALLK+LEEPP +V FIL + + TIRSRC+ Sbjct: 112 SLAPFQSPHKVYIIDEVHMLTEPAFNALLKTLEEPPSRVYFILATTEPQKVPVTIRSRCV 171 Query: 183 SIKFNSLSENNLYKALEQL 201 + F + +++ L ++ Sbjct: 172 HLPFQRIPNDDVVARLHEV 190 >gi|206901396|ref|YP_002251788.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] gi|206740499|gb|ACI19557.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] Length = 521 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 98/236 (41%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G E I L + HA LF G +G GK T+ A + +Q Sbjct: 7 RKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALNCVQG 66 Query: 62 PDFSKAPVRMCNPDPC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P PC ++A D + + + N +DEIR IR Sbjct: 67 P----------TPTPCLKCESCVEIAEGRSIDVIEIDAASNR---------GIDEIRDIR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 L ++V +ID V + A NALLK LEEPP+ V+FI+ + + TI S Sbjct: 108 EKARLLPVRDRYKVYIIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILS 167 Query: 180 RCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 RC F L+ + + K L E KI + + I + GS+ AI +L Sbjct: 168 RCQRFDFRRLTRDEVIKQLAKIAEKEGAKI--SEGALRLIAIQSQGSMRDAISLLE 221 >gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] Length = 645 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 24/202 (11%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P++++ +L G E I ++ SGR+ A LF G +G GK T R Sbjct: 1 MGQAYQPLHHKYRPQRFDQLVGQEAIAATMANALRSGRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L N + P PDPC +A+ D + + + N TG V Sbjct: 60 LARSL-NCTAAAGP----TPDPCGRCELCTTIAAGNALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRELIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNL 194 +L TI SRC F + +L Sbjct: 166 VLPTILSRCQRFDFRRIPLESL 187 >gi|86160055|ref|YP_466840.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-C] gi|85776566|gb|ABC83403.1| DNA polymerase III, tau subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 606 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 21/193 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + G E + + LS +G++ HA LF G +G+GK T R L Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTA-RLVAKALN 63 Query: 60 --QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 Q P V C+P V+ A+ D + + + N VD +R Sbjct: 64 CEQGPTAEPCGV-------CTPCVEIAEGRAV-DVVEIDAASNNG---------VDNVRD 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI Sbjct: 107 IVEAVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETI 166 Query: 178 RSRCLSIKFNSLS 190 SRC F L+ Sbjct: 167 LSRCQRFDFRRLT 179 >gi|51245283|ref|YP_065167.1| DNA polymerase III, subunit gamma/tau [Desulfotalea psychrophila LSv54] gi|50876320|emb|CAG36160.1| related to DNA polymerase III, subunit gamma/tau [Desulfotalea psychrophila LSv54] Length = 269 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 23/200 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + FD V QR + K L R+ HAL+F G +G+GK TL A + Sbjct: 13 QTFDQVIGQR-----PVVKTLQNSLARDRVAHALIFSGVRGVGKTTLARLMAKAI----- 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 R N +PC+ + +++ + + D Y ++ + + + EIR ++ Sbjct: 63 --NCEHRDNNNNPCNKCLSCQEITAGSSLDL----YEIDGASNRG-----IQEIRELKEK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +R+++ID V + A NALLK+LEEPP+ V F+ + I TI SRC Sbjct: 112 IRFLPTSAKYRIVIIDEVHMLTTEAFNALLKTLEEPPEHVYFMFATTEIHKIPITILSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 + + ++L E+L Sbjct: 172 QQYELKRVCADDLSGHFERL 191 >gi|89073484|ref|ZP_01160007.1| DNA polymerase III subunits gamma and tau [Photobacterium sp. SKA34] gi|89050748|gb|EAR56229.1| DNA polymerase III subunits gamma and tau [Photobacterium sp. SKA34] Length = 737 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKCA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL L + L K L + K+ + AA GS+ A+ + Sbjct: 170 CLQFHLKHLDHQQIQTQLEKVLTEEKVEYEAKALSLLARAAEGSMRDALSL 220 >gi|268608024|ref|ZP_06141754.1| DNA polymerase III subunits gamma and tau [Ruminococcus flavefaciens FD-1] Length = 539 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + + L SG+ HA LF G +G GK T A V +N Sbjct: 7 RKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAVNCRN- 65 Query: 63 DFSKAPVRMCNPDPC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 M + +PC + S AL D + + + N VD IR +R Sbjct: 66 --------MKDGNPCLECDICRDADSGALTDIVEIDAASNNG---------VDNIRDLRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 T + G +++ +ID V ++ A NALLK +EEPP V FIL + + +TI SR Sbjct: 109 AAVYTPDRGQYKIYIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSR 168 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 C F + ++ L EQ ++ D + A G + A+ +L Sbjct: 169 CQRFDFRRIKPEDIAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLL 220 >gi|255348697|ref|ZP_05380704.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 70] gi|255503237|ref|ZP_05381627.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 70s] gi|255506915|ref|ZP_05382554.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis D(s)2923] gi|289525374|emb|CBJ14851.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis Sweden2] gi|296434926|gb|ADH17104.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis E/150] gi|296438646|gb|ADH20799.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis E/11023] Length = 466 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R HA +F G +G GK TL +A + QNP Sbjct: 9 RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C A+ + L S++ + +++IR+I + Sbjct: 69 TQDQEPCNQC---------------AICKEISLGTSMDVIEIDGASHRGIEDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC Sbjct: 114 LFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + +SE + L + K G ++ R+ + AA GS+ A + Y Sbjct: 174 KMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225 >gi|120436181|ref|YP_861867.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803] gi|117578331|emb|CAL66800.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803] Length = 653 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L+ + + ALLF G +G+GK T A + Q Sbjct: 9 RKYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKE- 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 DP DF + + L+ + +VD+IR + + Sbjct: 68 ---------TQDPN------------EDFAFNIFELDAASNN-----SVDDIRNLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGNYKVYIIDEVHMLSASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +N L EQ + D + A G++ A+ I D+++S Sbjct: 162 FDFKRITVTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIY----DRVVS 215 >gi|325281472|ref|YP_004254014.1| putative DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM 20712] gi|324313281|gb|ADY33834.1| putative DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM 20712] Length = 373 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 36/258 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + GHEDI++ L +GR+ HA LF GE G G L +A +V D + C Sbjct: 5 VIGHEDIKQRLITSLRTGRISHAQLFAGETGYGSLALALAFAQYVFCTGDKKEDACGECP 64 Query: 73 ---------NPDP--CSPFVKQMASHALHDFLYLSYSLNPKTG-----KWRTVITVDEIR 116 +PD P V++ S +++ L +T +W T + V++ Sbjct: 65 SCRKIQKYIHPDLHFVFPVVRKTKSPVSDEYINEWRRLLTRTNYFGLEEWYTEMGVEDNA 124 Query: 117 RIRYFLSLTAN-----------TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + + +AN + Y ++M P + MN +N LLK +EEP K LF++ Sbjct: 125 QAAIYTEESANILRKLNLKSFESDYKILVMWLP-EKMNPECSNKLLKIIEEPFDKTLFLM 183 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +S I++TI+SR I L + + + L K + ++ +A+ G+ +A+ Sbjct: 184 VSEHPEQIINTIQSRLQRIHIPPLHQEQIQRQLIAEKGIAAQKAEEYAHVAS-GNWYKAL 242 Query: 226 KILH------YDCDKIIS 237 ++L Y+ +K IS Sbjct: 243 RLLDETEEQIYNQEKFIS 260 >gi|298242623|ref|ZP_06966430.1| DNA polymerase III, delta prime subunit [Ktedonobacter racemifer DSM 44963] gi|297555677|gb|EFH89541.1| DNA polymerase III, delta prime subunit [Ktedonobacter racemifer DSM 44963] Length = 343 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 18/221 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 + GHE L + S ++ HA LF G IGK+ L R+A +L PD +P+ Sbjct: 14 IIGHEHSIDILRRLLASQQVRHAYLFSGPPRIGKSLLAHRFAQTLLCTGGPDPRVSPLNP 73 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 CN C K + H+ H +++ K I +++IR ++ S G Sbjct: 74 CNT--CLACRKVL--HSNHPDVHVVTRAPDKQ-----FIVIEQIRALQNDSSRRTLEGRR 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 V +I MN AAN LLK+LEEP V+ +L +L TI SR + L+ Sbjct: 125 NVFLIPDAHQMNVQAANCLLKTLEEPEPDVVLLLTVPEPGLLLPTIISRVQQLPMQLLTT 184 Query: 192 NNLYKALEQLKIMGWDS---KRDFVKIAAYGSVARAIKILH 229 + +AL + W++ + D V A G + A++ + Sbjct: 185 TKIRQAL----VEDWEADPKEADLVAALAAGRMGWAVQAIE 221 >gi|260912516|ref|ZP_05919050.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] gi|260633365|gb|EEX51521.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] Length = 608 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 20/181 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + PV + G + L SG++ HA LF G +G+GK T F A + L Sbjct: 9 RKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLTP 68 Query: 62 PDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +A CN + C F Q + ++ L + N +T++ D+ R Sbjct: 69 TETGEA----CNHCESCQAFNDQRS----YNIFELDAASNNSVENIKTLM--DQTR---- 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SR Sbjct: 115 ---IPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSR 171 Query: 181 C 181 C Sbjct: 172 C 172 >gi|169825459|ref|YP_001695634.1| DNA polymerase III subunit delta' [Lysinibacillus sphaericus C3-41] gi|168994736|gb|ACA42275.1| DNA polymerase III subunit delta' [Lysinibacillus sphaericus C3-41] Length = 290 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 2/93 (2%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T I VD+IR ++ +L A G +V +ID + MN NAANALLKSLEEP Q L++L+S Sbjct: 68 TKIKVDQIRELQREAALKAVEGQKQVFIIDNANKMNENAANALLKSLEEPLQDTLYLLVS 127 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 IL TI SR ++K EN L E+ Sbjct: 128 ETKNNILPTIISRVQTLKMK--EENRLVDEAEK 158 >gi|166154545|ref|YP_001654663.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 434/Bu] gi|166155420|ref|YP_001653675.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335807|ref|ZP_07224051.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis L2tet1] gi|165930533|emb|CAP04028.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis 434/Bu] gi|165931408|emb|CAP06982.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 466 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R HA +F G +G GK TL +A + QNP Sbjct: 9 RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C A+ + L S++ + +++IR+I + Sbjct: 69 TQDQEPCNQC---------------AICKEISLGTSMDVIEIDGASHRGIEDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC Sbjct: 114 LFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + +SE + L + K G ++ R+ + AA GS+ A + Y Sbjct: 174 KMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225 >gi|148241162|ref|YP_001226319.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307] gi|147849472|emb|CAK26966.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307] Length = 604 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 30/220 (13%) Query: 5 AFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH 57 A++P++++ +L G E I LSQ GR+ A LF G +G GK T R Sbjct: 2 AYEPLHHKYRPQRFDQLVGQEAIAATLSQALQRGRIAPAYLFSGPRGTGK-TSSARILAR 60 Query: 58 VLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 L N S P +PC +A+ D + + + N TG VD I Sbjct: 61 SL-NCLSSDGPTA----EPCGTCELCTAIAAGGALDVIEIDAASN--TG-------VDNI 106 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + W+V ++D ++ A NALLK+LEEPP +V+F+L + +L Sbjct: 107 RDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 TI SRC F + +ALEQ + W ++++ + I Sbjct: 167 TILSRCQRFDFRRIP----LQALEQHLL--WIAEQEAINI 200 >gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] Length = 594 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + L +G++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPTNFDDVVGQHALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLHP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F A +L+ + S N + ++IR + + Sbjct: 69 GPGGEACGEC--ESCQAF---QAGRSLNVHELDAASNN----------SAEDIRALIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++ G ++V +ID V ++ AANA LK+LEEPP +FIL + +L TI SRC Sbjct: 114 NILPQMGRYKVFIIDEVHMLSTAAANAFLKTLEEPPAHAIFILATTEKQKLLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 FN + N++ L+++ Sbjct: 174 IYDFNRMEVNDIVHHLKRV 192 >gi|213157120|ref|YP_002319165.1| DNA polymerase III delta prime subunit [Acinetobacter baumannii AB0057] gi|213056280|gb|ACJ41182.1| DNA polymerase III delta prime subunit [Acinetobacter baumannii AB0057] Length = 311 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C ++K +H Y Sbjct: 14 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGECSSCQWLKS-DTHPN----Y 65 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + + + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 66 VHITTDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 123 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 124 EEPGERVVLILLADHYLKLPATIRSR 149 >gi|222523851|ref|YP_002568321.1| DNA polymerase III subunits gamma and tau [Chloroflexus sp. Y-400-fl] gi|222447730|gb|ACM51996.1| DNA polymerase III, subunits gamma and tau [Chloroflexus sp. Y-400-fl] Length = 598 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 20/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G E + + L R+ HA LF G +G+GK T+ A V NPD + P +C Sbjct: 18 LVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCLNPDPTARPCGVC 77 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C+ + A D + + + + +V++ R I + + Sbjct: 78 --EMCAAIAEGRAV----DVIEMDAASH---------TSVEDAREIIERVQFRPAEARMK 122 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID ++ A NALLK+LEEPP LFIL + + +TI SRC F S + Sbjct: 123 VYIIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVS 182 Query: 193 NLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILH 229 + L ++ I+ D + + AA GS+ A+ IL Sbjct: 183 AMAAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILE 223 >gi|220918864|ref|YP_002494168.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-1] gi|219956718|gb|ACL67102.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-1] Length = 601 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 15/190 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P C ++A D + + + N VD +R I Sbjct: 65 EKGPTAEPCGVCTP--CV----EIAEGRAVDVVEIDAASNNG---------VDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI SR Sbjct: 110 AVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLS 190 C F L+ Sbjct: 170 CQRFDFRRLT 179 >gi|322392118|ref|ZP_08065580.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris ATCC 700780] gi|321145018|gb|EFX40417.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris ATCC 700780] Length = 554 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVIARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QV 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIRDIRDKSTYAPSIAQ 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++++ LE+ G D + + V+I A G + A+ IL Sbjct: 179 TQDIRDHIFYILEK---EGIDYETEAVEIIARRAEGGMRDALSIL 220 >gi|282881371|ref|ZP_06290050.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281304777|gb|EFA96858.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 383 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 41/256 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E+ + L Q R+ HAL+ G QG GK L +A +VL D + + Sbjct: 6 VIGQEEAQARLVQLVHENRVPHALMLCGPQGCGKLALALAFASYVLGERDANGQSILASE 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTG--------------KWRTVI------TVD 113 + + M + H L+ +Y + TG +WRT++ ++D Sbjct: 66 SAILN--AEAMLRNWQHPDLHFTYPVIRPTGTSSDHKMISDDFGKEWRTLLNDTVYFSID 123 Query: 114 E--------IRRIRYF----------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 + ++ + F LSL ++ G +++ +I + MN+ AN LLK LE Sbjct: 124 QWLECMKATTQQAQIFEAESDNLTQKLSLKSSQGGYKICLIWLPERMNQVCANKLLKLLE 183 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 EPP + LF+++ +L TI SR I + + + +AL Q + + ++ +I Sbjct: 184 EPPSQTLFLMVCEEPDRLLETILSRVQRIDIPRIEDVAIEQALIQQRGIEANNAHYIARI 243 Query: 216 AAYGSVARAIKILHYD 231 A GS RA++ L D Sbjct: 244 AN-GSWLRALQTLSAD 258 >gi|120554533|ref|YP_958884.1| DNA polymerase III, subunits gamma and tau [Marinobacter aquaeolei VT8] gi|120324382|gb|ABM18697.1| DNA polymerase III, gamma subunit [Marinobacter aquaeolei VT8] Length = 637 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+G A + Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALEHQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C K++ + D + + + +TG VD++R + Sbjct: 65 ETGITPNPCGEC--DSC----KEILENRFVDLIEIDAAS--RTG-------VDDMRELTD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ ++ L+ + Sbjct: 170 CLQFNLKRMTPEHIVGHLKHV 190 >gi|254428260|ref|ZP_05041967.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax sp. DG881] gi|196194429|gb|EDX89388.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax sp. DG881] Length = 635 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSRCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P +++ D + + + K V++ R + Sbjct: 65 EQGVSARPCGVC------PTCQEITDGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + L+ L Sbjct: 170 CLQFSLKALPAEQIAGHLKTL 190 >gi|197124085|ref|YP_002136036.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp. K] gi|196173934|gb|ACG74907.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. K] Length = 601 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 15/190 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P C ++A D + + + N VD +R I Sbjct: 65 EKGPTAEPCGVCTP--CV----EIAEGRAVDVVEIDAASNNG---------VDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI SR Sbjct: 110 AVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLS 190 C F L+ Sbjct: 170 CQRFDFRRLT 179 >gi|307249479|ref|ZP_07531467.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858472|gb|EFM90540.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 466 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|259047399|ref|ZP_05737800.1| DNA polymerase III, delta prime subunit [Granulicatella adiacens ATCC 49175] gi|259035590|gb|EEW36845.1| DNA polymerase III, delta prime subunit [Granulicatella adiacens ATCC 49175] Length = 319 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 19/169 (11%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL---HD 91 HA LFEG +GIGKA + A + C Q+ H L H Sbjct: 19 HAYLFEGAKGIGKAEMAKEIA------------KILNCTNRSVGEGACQVCEHCLRIEHG 66 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + P+ T I V++IR ++ L+ TA + +I VD + AAN+LL Sbjct: 67 NFPDYIVVEPEG----TTIKVNQIRALKSQLTKTAMESSAIICVIHAVDTLTPGAANSLL 122 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 K LEEP + FIL++ +L TI+SRC I+F S E+ + L++ Sbjct: 123 KFLEEPTGNIHFILLTEQLSKVLITIQSRCQIIRFQSNQEDTVNGLLKE 171 >gi|187928128|ref|YP_001898615.1| DNA polymerase III subunits gamma and tau [Ralstonia pickettii 12J] gi|187725018|gb|ACD26183.1| DNA polymerase III, subunits gamma and tau [Ralstonia pickettii 12J] Length = 731 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 24/198 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPDFSKA 67 L G E + K L+ R+HHA LF G +G+GK TL G Q + Sbjct: 18 LVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCVGADGQG-GITAQ 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P +C C+ ++ + D++ + + N VDE+ ++ Sbjct: 77 PCGVCRA--CT----EIDAGRFVDYIEMDAASN---------RGVDEMAQLLDRAVYAPT 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SRCL Sbjct: 122 SGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 181 Query: 188 SLSENNLYKALEQLKIMG 205 + ++ L+ +I+G Sbjct: 182 QMPPGHIVSHLD--RILG 197 >gi|312877704|ref|ZP_07737658.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor lactoaceticus 6A] gi|311795505|gb|EFR11880.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor lactoaceticus 6A] Length = 536 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + E I K L ++ HA +F G +G GK T Sbjct: 9 RKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 59 MSRA-VNCLNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNT---------SVNDVRQI 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI Sbjct: 109 RDEVRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATIL 168 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 169 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 223 >gi|300691473|ref|YP_003752468.1| DNA polymerase III, delta' subunit [Ralstonia solanacearum PSI07] gi|299078533|emb|CBJ51188.1| DNA polymerase III, delta' subunit [Ralstonia solanacearum PSI07] Length = 336 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 19 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPAVDGQPCQTCAA--CNWFAQGNHPDFH 76 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ + K +I ++++R++ + + + RV+++ P+D + Sbjct: 77 LVRPEAMEEAPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVVYPLDAL 136 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 137 QTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRC 175 >gi|255319321|ref|ZP_05360538.1| DNA polymerase III, subunits gamma and tau [Acinetobacter radioresistens SK82] gi|262379765|ref|ZP_06072921.1| DNA polymerase III [Acinetobacter radioresistens SH164] gi|255303714|gb|EET82914.1| DNA polymerase III, subunits gamma and tau [Acinetobacter radioresistens SK82] gi|262299222|gb|EEY87135.1| DNA polymerase III [Acinetobacter radioresistens SH164] Length = 721 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQSHVSRALTNALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCA------TCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L+ + + + L ++ Sbjct: 169 CLQFTLRPLAVDEITEHLTRI 189 >gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Herminiimonas arsenicoxydans] gi|133738180|emb|CAL61225.1| DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] [Herminiimonas arsenicoxydans] Length = 682 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 22/207 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P L G E + + L+ + R+HHA LF G +G+GK TL F Sbjct: 5 VLARKYRPKSFDTLVGQEHVVRALTHALENKRLHHAYLFTGTRGVGKTTLSRILAKSFNC 64 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 G N D + P +C + C + + D++ + + N VDE Sbjct: 65 IGPD-GNGDITATPCGVC--EACV----AIDAGRFVDYIEMDAASN---------RGVDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ + ++V MID V + +A N++LK+LEEPP+ V FIL + I Sbjct: 109 MAQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL + ++ L+ + Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVAHLDDI 195 >gi|312135789|ref|YP_004003127.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor owensensis OL] gi|311775840|gb|ADQ05327.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor owensensis OL] Length = 534 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + + I K L ++ HA +F G +G GK T A + L Sbjct: 7 RKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCLNL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P C D C K + D L + + N +V+++R+IR Sbjct: 67 KDGN--PCNEC--DVC----KSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP+ LFIL + + +TI SRC Sbjct: 110 VRYPPSVCRKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL 201 F +S ++Y+ L+++ Sbjct: 170 QRFDFKRISVKDIYERLKKI 189 >gi|307247251|ref|ZP_07529300.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856224|gb|EFM88378.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 688 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECA------NCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|190149536|ref|YP_001968061.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914667|gb|ACE60919.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 688 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECA------NCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|259502691|ref|ZP_05745593.1| DNA polymerase III [Lactobacillus antri DSM 16041] gi|259169336|gb|EEW53831.1| DNA polymerase III [Lactobacillus antri DSM 16041] Length = 598 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 8 RVWRPQRFDELVGQQVVTQTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH-- 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ K + + L+D + + + N V+EIR IR Sbjct: 66 ------HLKDGEPCNECEICKAITNGQLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + Y+ L+Q ++ + + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRISAQDAYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|322417711|ref|YP_004196934.1| DNA polymerase III subunits gamma and tau [Geobacter sp. M18] gi|320124098|gb|ADW11658.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M18] Length = 575 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK T R L Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGK-TSSARILAKALN 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S V CN CS ++ +++ D + + N TG VD+IR +R Sbjct: 64 CE--SGLTVEPCNS--CSTCLEITDGNSV-DVFEIDGASN--TG-------VDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLS 190 C F ++ Sbjct: 170 CQRFDFKRIA 179 >gi|161611258|ref|YP_296320.2| DNA polymerase III subunits gamma and tau [Ralstonia eutropha JMP134] Length = 730 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 26/237 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL R L Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLS-RILAKALN 63 Query: 61 ------NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 N + P C C+ ++ S D++ + + N VDE Sbjct: 64 CTGADGNGGITAQPCGQCKA--CT----EIDSGRFVDYIEMDAASN---------RGVDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 109 MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 T+ SRCL + + L+ + + +G D + AA+GS+ A+ + Sbjct: 169 VTVLSRCLQFNLKQMPPAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSL 225 >gi|149182697|ref|ZP_01861164.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1] gi|148849607|gb|EDL63790.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1] Length = 565 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 19/183 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMC 72 + G + + K L ++ HA LF G +G GK + A V + +APV C Sbjct: 18 VVGQQHVTKTLQNALLQQKISHAYLFSGPRGTGKTSAAKILAKAV----NCERAPVAEPC 73 Query: 73 NP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N D C + ++ D + + + N V+EIR IR + N + Sbjct: 74 NECDSCLG----ITDGSIPDVIEIDAASNN---------GVEEIRDIRDKVKYAPNVVSY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC F ++ Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRITA 180 Query: 192 NNL 194 ++ Sbjct: 181 RDI 183 >gi|148260992|ref|YP_001235119.1| DNA polymerase III subunits gamma and tau [Acidiphilium cryptum JF-5] gi|146402673|gb|ABQ31200.1| DNA polymerase III, subunits gamma and tau [Acidiphilium cryptum JF-5] Length = 614 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 113/279 (40%), Gaps = 34/279 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G + + + L + R+ HA + G +G+GK T R L Sbjct: 48 RKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTA-RILARALNCTG 106 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P PDPC +A A D + + + N R +I E R R Sbjct: 107 ADGQGGP----TPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREII---EATRFR 159 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ T +V ++D V ++RNA NALLK+LEEPP V F+ + + T+ S Sbjct: 160 PMIART------KVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLS 213 Query: 180 RCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L + E+ + D V AA GSV + +L D+ Sbjct: 214 RCQRFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLL----DQA 269 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I+ E A + +AD L D+ + FD L Sbjct: 270 IARA--------DEGAPVTAELVADMLGLADRGMVFDLL 300 >gi|163846115|ref|YP_001634159.1| DNA polymerase III subunits gamma and tau [Chloroflexus aurantiacus J-10-fl] gi|163667404|gb|ABY33770.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aurantiacus J-10-fl] Length = 609 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 20/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G E + + L R+ HA LF G +G+GK T+ A V NPD + P +C Sbjct: 29 LVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCLNPDPTARPCGVC 88 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C+ + A D + + + + +V++ R I + + Sbjct: 89 --EMCAAIAEGRAV----DVIEMDAASH---------TSVEDAREIIERVQFRPAEARMK 133 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID ++ A NALLK+LEEPP LFIL + + +TI SRC F S + Sbjct: 134 VYIIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVS 193 Query: 193 NLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILH 229 + L ++ I+ D + + AA GS+ A+ IL Sbjct: 194 AMAAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILE 234 >gi|126641603|ref|YP_001084587.1| DNA polymerase III delta prime subunit [Acinetobacter baumannii ATCC 17978] Length = 326 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|308066974|ref|YP_003868579.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681] gi|305856253|gb|ADM68041.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681] Length = 583 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 19/189 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + + G + I + L R HA LF G +G GK + A + N + Sbjct: 8 RAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI--NCE 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ K++ + A+ D + + N V+EIR +R Sbjct: 66 HGPAP------EPCNECEACKRITAGAVMDVQEIDAASNR---------GVEEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPTEVRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRC 170 Query: 182 LSIKFNSLS 190 F +S Sbjct: 171 QRFDFRRVS 179 >gi|291297392|ref|YP_003508790.1| DNA polymerase III subunits gamma and tau [Meiothermus ruber DSM 1279] gi|290472351|gb|ADD29770.1| DNA polymerase III, subunits gamma and tau [Meiothermus ruber DSM 1279] Length = 641 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 29/256 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R P + G E +++ L SGR+ A LF G +G+GK + A + Q + Sbjct: 6 RQARPTTFDEMVGQEHVKEVLLNALRSGRLAQAYLFSGPRGVGKTS----SARLIAQAVN 61 Query: 64 FSKAPVRMCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S +P PC ++ H D L + + N +V+++R +R Sbjct: 62 CS------SDPRPCGTCEGCRLVREGRHPDVLEIDAASN---------NSVEDVRELRER 106 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+ +V+++D M+++A NALLK+LEEPP V+FI + + TI SR Sbjct: 107 ILLSPILSQHKVVILDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRT 166 Query: 182 LSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAY---GSVARAI----KILHYDCD 233 +F LSE + + L++ L +G +++ +++ A G++ A ++L + Sbjct: 167 QHFRFRRLSEAEIVEKLQRILAGLGREAEPPALQLVARLADGAMRDAESLLDRLLTLEGP 226 Query: 234 KIISSYIDLIHIPRQE 249 + D + +P QE Sbjct: 227 LTLKQTEDALGLPPQE 242 >gi|197119573|ref|YP_002140000.1| DNA polymerase III subunit delta-prime [Geobacter bemidjiensis Bem] gi|197088933|gb|ACH40204.1| DNA polymerase III, delta-prime subunit [Geobacter bemidjiensis Bem] Length = 320 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 25/217 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + L + R+ HA LF G +G GK + V D + C Sbjct: 6 VLGQDLAVSVLRRSIAMNRVSHAYLFSGIEGCGKKKTALAFVQAVFCGRDEACGVCSSC- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++AS D + L P I +D++R ++ LS + Sbjct: 65 --------RKIASGQHPDL----HILEPDG----AFIKIDQVRELQKELSYRPFEAPKKA 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID D N + NALLK+LEEPP L ILI+ T+L TI SRC ++ F L Sbjct: 109 CIIDGADKFNLASGNALLKTLEEPPGNALMILIATERSTVLQTILSRCQALTFQPLP--- 165 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 AL + +++ + ++AA GS+ R I+I Sbjct: 166 --AALIEERLVREQFPAEAARVAATLCGGSLRRGIEI 200 >gi|86143111|ref|ZP_01061533.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217] gi|85830556|gb|EAQ49015.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217] Length = 391 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 25/187 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A + Q D Sbjct: 37 RKYRPATFKDVVGQQAITNTLENAIANNHLAQALLFTGPRGVGKTTCARILAKKINQEAD 96 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V + +A + F + S N +VD+IR + + Sbjct: 97 ---------------EVVDENEDYAFNIFELDAASNN----------SVDDIRNLIDQVR 131 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + IL TI SRC Sbjct: 132 IAPQVGNYKVYIIDEVHMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKILPTILSRCQI 191 Query: 184 IKFNSLS 190 F ++ Sbjct: 192 FDFKRIT 198 >gi|303235985|ref|ZP_07322588.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302483858|gb|EFL46850.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 373 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 27/241 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN----PDFSKAPV 69 + G E+ ++ L + + HALLF G G GK L +A H+L++ P+ +KA + Sbjct: 6 VIGQEETKQRLMKMAADKHVPHALLFCGPYGSGKMALAMAFACHLLESSSTAPENTKAML 65 Query: 70 -RMCNPDP--CSPFVKQMASHALH-----DFLYLSYSLNPKTG-----KW---------R 107 + +PD P +K + H DF ++L K +W + Sbjct: 66 NKWEHPDLHFTFPTIKTPNMGSEHQPISSDFAKEWHNLISKGTYFNIRQWMEEMNATSQQ 125 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +IT E I LSL ++ G +++ +I + MN+ +AN +LK LEEP + +F+++S Sbjct: 126 AIITAAESDNIAKNLSLKSSQGGYKISIIWLPERMNQTSANKILKLLEEPSEGTVFLMVS 185 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +L TI SR I + + + +AL + + D+ +I A GS +AI+ Sbjct: 186 EEPEKLLETIVSRTQRIDVKRIDDEAIEQALVAQRGLEADAAHRIARI-ARGSWLKAIET 244 Query: 228 L 228 L Sbjct: 245 L 245 >gi|184157925|ref|YP_001846264.1| ATPase [Acinetobacter baumannii ACICU] gi|294842716|ref|ZP_06787399.1| ATPase [Acinetobacter sp. 6014059] gi|183209519|gb|ACC56917.1| ATPase [Acinetobacter baumannii ACICU] gi|322508244|gb|ADX03698.1| holB [Acinetobacter baumannii 1656-2] gi|323517870|gb|ADX92251.1| ATPase [Acinetobacter baumannii TCDC-AB0715] Length = 326 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C ++K +H Y Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGECSSCQWLKS-DTHPN----Y 80 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + + + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 81 VHITTDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|298386923|ref|ZP_06996478.1| DNA polymerase III [Bacteroides sp. 1_1_14] gi|298260597|gb|EFI03466.1| DNA polymerase III [Bacteroides sp. 1_1_14] Length = 374 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 45/254 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVSEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGVCP 65 Query: 59 -------LQNPDF---------SKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLN 100 L +PD SK +C+ PFV + L+ +L + N Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSSKGKREVCDDYIADWRPFVLKNPYFNLNHWLREMDAEN 125 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K Sbjct: 126 AQA-----IIYAKESDEILKKLSLKSSEGGFKITILWLPEKMHPVCANKLLKLLEEPPEK 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--A 217 +F+L+S A IL TI SR + + E+ + + L+ + I DS + IA A Sbjct: 181 TIFLLVSEAPEMILPTILSRTQRMNVRKIDESAIDRVLQSKYGIQPADS----LSIAHLA 236 Query: 218 YGSVARAIKILHYD 231 G+ +A++ +H + Sbjct: 237 NGNFIKALETIHLN 250 >gi|257057528|ref|YP_003135360.1| DNA polymerase III, delta prime subunit [Saccharomonospora viridis DSM 43017] gi|256587400|gb|ACU98533.1| DNA polymerase III, delta prime subunit [Saccharomonospora viridis DSM 43017] Length = 406 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 24/246 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G M HA LF G G G++ +A + D + C+ +A Sbjct: 47 GSMTHAWLFTGPPGSGRSVAARTFAAALQCTVDAGCGRCQGCH--------TTLAGTHAD 98 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L + L+ I+V E+R + + TG W++++I+ D + A+NAL Sbjct: 99 VKLVVPEGLS---------ISVSEMRALVQAAARRPTTGRWQIVIIEDADRLTEGASNAL 149 Query: 151 LKSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 LK++EEPP++ +F+L + + P +S TIRSRC ++ + S + L + G D Sbjct: 150 LKAVEEPPERTVFLLCAPSDHPDDISITIRSRCRTVNLRTPSPEAIATVLVERD--GIDP 207 Query: 209 KRD-FVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ 267 +R + G V RA + L D + + ++ IP + + + ADEL+S + Sbjct: 208 ERARWAASVCGGHVGRA-RRLATD-ENARARRAAVLRIPLGLRRAEDVFRCADELISTAE 265 Query: 268 KIAFDF 273 A + Sbjct: 266 ADATEV 271 >gi|317120921|ref|YP_004100924.1| DNA polymerase III subunits gamma and tau [Thermaerobacter marianensis DSM 12885] gi|315590901|gb|ADU50197.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter marianensis DSM 12885] Length = 825 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R++ P + G E + + L+ +GR+ HA LF G +G GK ++ A V Sbjct: 10 RSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNC--- 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S V CN C +++ + D L + + N +DEIR +R + Sbjct: 67 LSPEGVEPCNR--CE-VCREINDGSTMDVLEIDAASN---------RGIDEIRELRERVR 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V + A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 115 YAPARARYKVYIIDEVHMLTTEAFNALLKTLEEPPAHALFILATTEPHRLPATIVSRCQR 174 Query: 184 IKFNSLSENNLYKALEQL 201 F+ L+ + + L+ + Sbjct: 175 FDFHRLTPEQILERLQAV 192 >gi|304383844|ref|ZP_07366301.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] gi|304334922|gb|EFM01195.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] Length = 390 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 33/250 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G E+ + L GR+ HAL+ G G GK L +A +L Sbjct: 17 VIGQEETGRRLQMLVEEGRVPHALMLCGPSGSGKMALALAFASRLLCTHGHADSDACETC 76 Query: 60 ---------QNPD--FSKAPVRMC----NPDPCSPFVKQMASHALHDFLYLSYS---LNP 101 ++PD F+ +++ P S + H L Y + S Sbjct: 77 PQCVMLRKWEHPDLHFTFPTIKLAAMGSEHQPVSDDFAKEWRHLLLQSPYFTLSQWMTEM 136 Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + VIT E + LSL ++ G ++V ++ + MN +AN LLK LEEPPQ+ Sbjct: 137 GAANQQAVITGAESDELLKKLSLKSSQGGYKVSIVWLPERMNLTSANKLLKLLEEPPQQT 196 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +FIL+ +L TI+SR I ++ + + KAL + + + D+ R +IA GS Sbjct: 197 VFILVCEDPSLLLDTIKSRVQRIDVKRIATSAIEKALTEQRGLDPDTARRIARIAG-GSW 255 Query: 222 ARAIKILHYD 231 A++ L D Sbjct: 256 THALETLDAD 265 >gi|83749760|ref|ZP_00946736.1| DNA polymerase III subunit gamma/tau [Ralstonia solanacearum UW551] gi|83723580|gb|EAP70782.1| DNA polymerase III subunit gamma/tau [Ralstonia solanacearum UW551] Length = 785 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 34/216 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------- 50 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 56 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 115 Query: 51 -GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 G G + P R C FV D++ + + N Sbjct: 116 IGTDGQGGITAQP---CGVCRACTEIDAGRFV---------DYIEMDAASN--------- 154 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VDE+ ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + Sbjct: 155 RGVDEMAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 214 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 I T+ SRCL + ++ L+ +I+G Sbjct: 215 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLD--RILG 248 >gi|300691830|ref|YP_003752825.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum PSI07] gi|299078890|emb|CBJ51551.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum PSI07] Length = 729 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 G Q + P +C C+ ++ + D++ + + N VDE Sbjct: 65 VGTDGQG-GITAQPCGVCRA--CT----EIDTGRFVDYIEMDAASN---------RGVDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 109 MAQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 T+ SRCL + ++ L+ +I+G Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVSHLD--RILG 197 >gi|269102269|ref|ZP_06154966.1| DNA polymerase III delta prime subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162167|gb|EEZ40663.1| DNA polymerase III delta prime subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 320 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 21/226 (9%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQM 84 Q R HHA+L +G G+ L A VL QN D V C+ C F Sbjct: 15 QLLLQKRFHHAILLLAAKGSGQDALVRELAQTVLCQNNDHQACGV--CHS--CKLFAA-- 68 Query: 85 ASHALHDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H DF + + P + GK I VD +R+ + T+ G RVI+I+ D M Sbjct: 69 GNHP--DF----HVIKPEQEGK---QIGVDAVRQSNRWAVETSQLGGQRVILIEEADAMG 119 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 ANA+LK+LEEPP FIL + + +L TI SRC + + + + + +E + Sbjct: 120 EAGANAILKTLEEPPAGCQFILTARSLDNLLPTIVSRCNKWRLPTPNSKDTQRWVENQLM 179 Query: 204 MGWDSK----RDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 ++ + IA+ V + I H + K ++++ HI Sbjct: 180 QSISTEAVNLNNGAPIASLNFVENGMDIRHVNLIKTFTAFVQPPHI 225 >gi|222530074|ref|YP_002573956.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor bescii DSM 6725] gi|222456921|gb|ACM61183.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor bescii DSM 6725] Length = 534 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + E I + L ++ HA +F G +G GK T Sbjct: 7 RKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 57 MSRA-VNCLNPKDGNPCNECEICRSILDEKTLDVLEIDAASNT---------SVNDVRQI 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI Sbjct: 107 RDEVRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 167 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 221 >gi|72119213|gb|AAZ61476.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Ralstonia eutropha JMP134] Length = 745 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 26/237 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL R L Sbjct: 20 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLS-RILAKALN 78 Query: 61 ------NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 N + P C C+ ++ S D++ + + N VDE Sbjct: 79 CTGADGNGGITAQPCGQCKA--CT----EIDSGRFVDYIEMDAASN---------RGVDE 123 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 124 MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIP 183 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 T+ SRCL + + L+ + + +G D + AA+GS+ A+ + Sbjct: 184 VTVLSRCLQFNLKQMPPAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSL 240 >gi|16331080|ref|NP_441808.1| DNA polymerase III subunit delta' [Synechocystis sp. PCC 6803] gi|1653573|dbj|BAA18486.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803] Length = 319 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 5/193 (2%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G + L Q R+ A L G +G+GK +L + G L +K+ + Sbjct: 5 QSILGQDQAIALLQQAIAQKRIAPAYLLVGPEGVGK-SLAAKAFGETLLMGLGTKSDRQE 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANT 128 P + ++ H L+ S + G R +I V+++R I FLS Sbjct: 64 RFFAGNHPDLLKIEPTFQHQGKLLTASEADQAGLKRRAAPLIRVEQVREINRFLSRPPLE 123 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 VI+I+ MN AANALLK+LEEP + L IL++ + +L TI SRC I F Sbjct: 124 ADRAVILIEEAQAMNEGAANALLKTLEEPGRATL-ILLAPSVDVLLPTIVSRCQRIPFYR 182 Query: 189 LSENNLYKALEQL 201 L E ++ K L++L Sbjct: 183 LGEGDMTKILQRL 195 >gi|146295782|ref|YP_001179553.1| DNA-directed DNA polymerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409358|gb|ABP66362.1| DNA polymerase III, delta prime subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 320 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 18/182 (9%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G GK L ++ H+L +K+ +C C F + +SH DF Sbjct: 25 HAYIFEGEKGFGKKLLARVFSKHILCE---NKSSCGVCKS--CRLF--EASSHP--DFHI 75 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + K + + I+V+ IR I LS +V +I+ + ++ +A NALLK+L Sbjct: 76 I------KRQEDKKEISVESIREIIKDLSRGPIFSDKKVFIIEEGEELSISAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK 214 EEPP LFI+ + +L T+ SR + + F S + + K LEQ G + K VK Sbjct: 130 EEPPTYALFIITCNNIERLLPTVLSRSIVLSFKRYSASEIAKILEQ---NGLEPKDYIVK 186 Query: 215 IA 216 + Sbjct: 187 LC 188 >gi|320159544|ref|YP_004172768.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] Length = 553 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 16/198 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P +++ G + I + L +GR+ HA LF G +G GK T A V Sbjct: 7 RKWRPRLWEQVVGQDHIIQTLRNAVRTGRVGHAYLFAGPRGTGKTTTARLLAKAVNCLEE 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D +K P C D C+ + L D + + + N +V+++R +R + Sbjct: 67 DPAKRP---C--DQCAHCIAVNEGRFL-DLIEIDAASN---------TSVEDVRDLRDKI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + G ++V +ID V ++ A NALLK+LEEPP +FIL + I +T+ SRC Sbjct: 112 NFAPSQGRYKVYIIDEVHMLSTAAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQ 171 Query: 183 SIKFNSLSENNLYKALEQ 200 +F + + L Q Sbjct: 172 RHEFRRVPVQQIAALLRQ 189 >gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] Length = 465 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 ++ HA +F G +G GK ++ R L N K C + C + +H Sbjct: 33 NKISHAYIFSGPRGTGKTSVA-RILAKAL-NCSNRKGYEPCCECESCLSIDR--GTHP-- 86 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + L + N +DEIR+IR + ++ +ID + R A NAL Sbjct: 87 DVIELDAASNR---------GIDEIRKIRDAVGFKPMLSSHKIYIIDEFHMLTREAFNAL 137 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+KVLF+L + + TI SRC I+F + SE+ + + + ++ Sbjct: 138 LKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIEFRNFSEDAILENIRKV 188 >gi|152978645|ref|YP_001344274.1| DNA polymerase III subunits gamma and tau [Actinobacillus succinogenes 130Z] gi|150840368|gb|ABR74339.1| DNA polymerase III, subunits gamma and tau [Actinobacillus succinogenes 130Z] Length = 699 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 19/225 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E I L+ R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQNFHQVIGQEHILTALANGLKENRLHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + + D + + + K V++ R + Sbjct: 65 IHGVTAEPCGECE------HCKAIENGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 C+ +LS+ +L L Q KI + + AA GSV Sbjct: 170 CMQFHLKALSQQQIAQHLANILTQEKIPFEPTALGKIAKAAQGSV 214 >gi|32035419|ref|ZP_00135390.1| COG2812: DNA polymerase III, gamma/tau subunits [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207753|ref|YP_001052978.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae L20] gi|126096545|gb|ABN73373.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 688 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGEC------ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 C+ +L + + LE Sbjct: 170 CMQFHLRALDQAQIANHLE 188 >gi|325954389|ref|YP_004238049.1| DNA polymerase III subunits gamma and tau [Weeksella virosa DSM 16922] gi|323437007|gb|ADX67471.1| DNA polymerase III, subunits gamma and tau [Weeksella virosa DSM 16922] Length = 363 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 31/228 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + G E I L S ++ ALLF G +G+GK T Sbjct: 9 RKYRPLEFEDVVGQEAITSTLQHAIESHQLPQALLFCGPRGVGKTTC------------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ R N ++ DF + + L+ + +VD+IR + + Sbjct: 56 -ARILARKIN--------EENGGGDGQDFAFNIFELDAASNN-----SVDDIRSLIEQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +RV +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 IIPQVGKYRVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 F +S +N+L E+ K+ D + A G++ ++ I Sbjct: 162 YDFKRISVEDIKNHLKVVAEKEKVQYEDDALHLIAQKADGALRDSLSI 209 >gi|157965023|ref|YP_001499847.1| DNA polymerase III subunits gamma and tau [Rickettsia massiliae MTU5] gi|157844799|gb|ABV85300.1| DNA polymerase III gamma and tau chains [Rickettsia massiliae MTU5] Length = 516 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 22 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 81 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 82 ITENTTIKTC--EECTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 129 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FIL + I +TI SRC Sbjct: 130 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFILATTEVQKIPATIISRCQ 189 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 190 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 239 >gi|86133647|ref|ZP_01052229.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152] gi|85820510|gb|EAQ41657.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152] Length = 561 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK + A + Q Sbjct: 9 RKYRPQNFEDVVGQQAITNTLENAIKNNHLAQALLFTGPRGVGKTSCARILAKKINQ--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +++ S DF + + L+ + +VD+IR + + Sbjct: 66 ------------------QEVESSEDEDFAFNIFELDAASNN-----SVDDIRSLTDQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V +++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 103 IPPQTGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSL----SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++N L E+ I D + A G++ A+ I D+++S Sbjct: 163 FDFKRIGVLDAKNYLKTISEKEGINADDDALHIIAQKADGAMRDALSIF----DRVVS 216 >gi|310639621|ref|YP_003944379.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus polymyxa SC2] gi|309244571|gb|ADO54138.1| DNA polymerase III, subunits gamma and tau [Paenibacillus polymyxa SC2] Length = 590 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 19/189 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + + G + I + L R HA LF G +G GK + A + N + Sbjct: 15 RAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI--NCE 72 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 AP +PC+ K++ + A+ D + + N V+EIR +R Sbjct: 73 HGPAP------EPCNECEACKRITAGAVMDVQEIDAASN---------RGVEEIRDLRDK 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 118 VKYAPTEVRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRC 177 Query: 182 LSIKFNSLS 190 F +S Sbjct: 178 QRFDFRRVS 186 >gi|169633369|ref|YP_001707105.1| DNA polymerase III, delta prime subunit [Acinetobacter baumannii SDF] gi|169152161|emb|CAP01064.1| DNA polymerase III, delta prime subunit [Acinetobacter baumannii] Length = 326 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|329930186|ref|ZP_08283799.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5] gi|328935208|gb|EGG31689.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5] Length = 571 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 8 RAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P C + C +++ S A+ D + + N V+EIR +R + Sbjct: 68 PAEEPCNAC--EAC----RRITSGAVMDVQEIDAASNR---------GVEEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 YAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S LEQ+ Sbjct: 173 FDFRRVSLEEQTGRLEQI 190 >gi|309800115|ref|ZP_07694307.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis SK1302] gi|308116256|gb|EFO53740.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis SK1302] Length = 554 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + K L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEIVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPNQEGG----- 69 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 70 --EPCNNCYICQAVTDGSLEDVIEMDAASNNG---------VDEIRDIRDKSTYAPSIAQ 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F S+ Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIR 178 Query: 191 ENNLYKAL-EQLKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ + L+ G D + + V+I A G + A+ IL Sbjct: 179 TQDIRDHIFHILEKEGIDYESEAVEIIARRAEGGMRDALSIL 220 >gi|258625440|ref|ZP_05720333.1| DNA polymerase III, delta prime subunit [Vibrio mimicus VM603] gi|258582244|gb|EEW07100.1| DNA polymerase III, delta prime subunit [Vibrio mimicus VM603] Length = 324 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L + +G+G +L + L + P C+ S + Q +H D Sbjct: 26 KISAATLIQAPEGVGAESL-VEHMARTLMCTSSNSEPCGFCH----SCGLMQAGNHP--D 78 Query: 92 FLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 F + + P K GK ITV++IR I ++ +R+I+++P D MN +AANAL Sbjct: 79 F----HVVKPEKVGK---SITVEQIRHINRVAQESSQLSGYRLIVVEPADAMNDSAANAL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEP LFIL++ +L TI SRC Sbjct: 132 LKTLEEPAPDCLFILVTSRINHLLPTIVSRC 162 >gi|323697998|ref|ZP_08109910.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. ND132] gi|323457930|gb|EGB13795.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio desulfuricans ND132] Length = 622 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 19/198 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G + ++ LS+ ++ A LF G +G+GK T+ F A + + P Sbjct: 10 YRPQTFEEVAGQQAVKSILSRAAAQDKIAPAYLFSGTRGVGKTTIARIFAKALNCVNAP- 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C +Q+ + D + + + N +D+ RR++ + Sbjct: 69 -TGEPCNVC--DHC----RQITAGVAPDVIEIDGASN---------RGIDDARRLKEDIG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP + FI+ + +TI SRC Sbjct: 113 YAPIDGRYKVFIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEHHKFPATIISRCQH 172 Query: 184 IKFNSLSENNLYKALEQL 201 F L + L LE++ Sbjct: 173 YTFKMLPQAELVAHLEKI 190 >gi|291521121|emb|CBK79414.1| DNA polymerase III, delta' subunit [Coprococcus catus GD/7] Length = 329 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 26/218 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I + + ++ HA + GE G GK L +A ++ + Sbjct: 7 IIGHEQIIEHFRSALKNHQVSHAYILNGENGSGKNMLAKAFAKALVCEAGYG-------- 58 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT-----VITVDEIR-RIRYFLSLTAN 127 D C+ A H F S N KW T I VDE+R +I + + Sbjct: 59 -DSCN------MCRACHQF----DSGNHPDVKWITHEKANSIGVDEVREQINNDIVIKPY 107 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 + ++V +ID + M A NALLK++EEPP+ + + +++ +L T+RSRC+ + Sbjct: 108 SSKYKVYIIDEAEKMTVQAQNALLKTIEEPPEYAVILFLTNTLDVLLQTVRSRCIIMNLR 167 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 S+ + + L Q K D + A G+V +AI Sbjct: 168 SVDTKLIQQYLMQ-KYQLPDYQARVCAAYAQGNVGKAI 204 >gi|284931635|gb|ADC31573.1| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum str. F] Length = 599 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 34/247 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 + + P + G I L + ++ A +F+G +GIGK ++ A + L Sbjct: 6 QKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYNCLNK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D +CN + + S + Y L+ T VDEIR+I Sbjct: 66 KDGD-----VCNQCSACELINENKSQDI-------YELDAATNNG-----VDEIRKIIDA 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +V ++D ++ A NALL++LEEPP+ V+FI + I T+ SRC Sbjct: 109 INYAPMNLSKKVYILDEAHMLSNGAWNALLRTLEEPPKHVVFIFATTEFNKIPLTVVSRC 168 Query: 182 LSIKFNSLSENNLYKAL------EQLKI--MGWDSKRDFVKIAAYGSVARAIKILH---Y 230 S F L +++L L E++KI + D DF A GS A+ IL Y Sbjct: 169 QSFNFKKLDKDDLVDVLKNVVKQEKIKIEDLAIDKIADF----ASGSARDALSILQQLAY 224 Query: 231 DCDKIIS 237 D +K I+ Sbjct: 225 DKNKKIT 231 >gi|322382239|ref|ZP_08056152.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153820|gb|EFX46188.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 559 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 19/178 (10%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMC 72 G + I + L R HA LF G +G GK + F A + + P ++ P C Sbjct: 1 MGQKHITQTLQNSLREQRFTHAYLFSGPRGTGKTSTAKIFAKAVNCMHGP--AEEP---C 55 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N CS ++ + A+ D + + + N V+EIR IR + ++ Sbjct: 56 NE--CSACIR-ITQGAVMDVIEIDAASNRG---------VEEIRDIRDKVKYAPTEVRYK 103 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 V +ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC F +S Sbjct: 104 VYIIDEVHMLTTEAFNALLKTLEEPPEHVIFILATTEPHKLPATIISRCQRFDFRRIS 161 >gi|213962623|ref|ZP_03390884.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga sputigena Capno] gi|213954618|gb|EEB65939.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga sputigena Capno] Length = 363 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + + ALLF G +G+GK T A + + Sbjct: 9 RKYRPQSFHDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILAKKINE--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A V N DF + + L+ + +VD+IR++ + Sbjct: 66 -QTAGVEDEN-----------------DFAFNIFELDAASNN-----SVDDIRKLIEQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 103 IPPQVGKYKVYIIDEVHMLSPSAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ N++ + L +Q I D + A G++ A+ I D+++S Sbjct: 163 FDFKRITINDIREYLKYIAQQQGIAAEDEALQIIAQKADGAMRDALSIF----DRVVS 216 >gi|169796146|ref|YP_001713939.1| DNA polymerase III, delta prime subunit [Acinetobacter baumannii AYE] gi|215483600|ref|YP_002325821.1| hypothetical protein ABBFA_001918 [Acinetobacter baumannii AB307-0294] gi|239502198|ref|ZP_04661508.1| hypothetical protein AbauAB_07785 [Acinetobacter baumannii AB900] gi|260555196|ref|ZP_05827417.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] gi|294836407|ref|ZP_06781090.1| hypothetical protein A60131_00665 [Acinetobacter sp. 6013113] gi|294858337|ref|ZP_06796106.1| hypothetical protein A6013_07082 [Acinetobacter sp. 6013150] gi|301345163|ref|ZP_07225904.1| hypothetical protein AbauAB0_02944 [Acinetobacter baumannii AB056] gi|301511299|ref|ZP_07236536.1| hypothetical protein AbauAB05_06963 [Acinetobacter baumannii AB058] gi|301595469|ref|ZP_07240477.1| hypothetical protein AbauAB059_06652 [Acinetobacter baumannii AB059] gi|169149073|emb|CAM86950.1| DNA polymerase III, delta prime subunit [Acinetobacter baumannii AYE] gi|213986373|gb|ACJ56672.1| hypothetical protein ABBFA_001918 [Acinetobacter baumannii AB307-0294] gi|260411738|gb|EEX05035.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] Length = 326 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVL---CLNKQPQGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|162450062|ref|YP_001612429.1| DNA polymerase III delta' subunit [Sorangium cellulosum 'So ce 56'] gi|161160644|emb|CAN91949.1| DNA polymerase III delta' subunit [Sorangium cellulosum 'So ce 56'] Length = 331 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRM 71 + G + L + +GR+HHA FEG G+GK A + A V D P+ Sbjct: 6 ILGQDTAVGTLVRALEAGRVHHAYRFEGPPGVGKELAAVALSQA-LVCTGGD----PLGC 60 Query: 72 CNPDPCSPFVKQ---MASHALH-DFLYLSYSLNPKT--GKWR---TVITVDEIRRIRYFL 122 D C + + LH D ++ + P G+ R T I+VD++R I L Sbjct: 61 GRCDACRRAAARSDGRPAAPLHPDVQIVAKNFYPAAVIGRSRDELTEISVDQVRAI--VL 118 Query: 123 SLTA---NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + G RV ++ + ++ AANA LK+LEEP FIL++ +L+TIRS Sbjct: 119 ARAAYPPHEGRARVFIVRDAEDLSVGAANAFLKTLEEPRPGTHFILLTSRGDRLLNTIRS 178 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 R L ++F LSE + + L + + + D A GS + A+ + Sbjct: 179 RTLPVRFAPLSEALIRRILRDRGV--PEGRHDLAVELAAGSASTALDL 224 >gi|154175283|ref|YP_001408570.1| DNA polymerase III subunits gamma and tau [Campylobacter curvus 525.92] gi|112803916|gb|EAU01260.1| protein EbsC [Campylobacter curvus 525.92] Length = 553 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 25/236 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + K L+ GR+ HA LF G +G GK + ++ ++ + P C Sbjct: 16 LIGQEAVSKSLTHALDEGRISHAYLFSGLRGSGKTSSARIFSKALVCEKGPTSRPCETC- 74 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C MA+ + H D + + + + K +D+IR + ++ Sbjct: 75 -PQCI-----MANESRHMDIIEMDAASHRK---------IDDIRELIEQTKYKPAMARYK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID V + + A NALLK+LEEPP V FIL + + +T+ SR +F + +N Sbjct: 120 IFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIGKN 179 Query: 193 NLYKALE-QLKIMGWDSKRDFVKIAA---YGSVARAIKILH----YDCDKIISSYI 240 ++ K LE L G +R+ ++I A GS+ + +L Y + I S + Sbjct: 180 SIIKHLEFILSKEGISYEREALEILARSGRGSLRDTLTLLDQAIIYGANNITQSSV 235 >gi|107028994|ref|YP_626089.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia AU 1054] gi|116689848|ref|YP_835471.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia HI2424] gi|105898158|gb|ABF81116.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia AU 1054] gi|116647937|gb|ABK08578.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia HI2424] Length = 787 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ R+HHA LF G +G+GK TL +A + + P +C Sbjct: 18 LVGQEHVVRALTHALDGERLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A NA+LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQLKIMG 205 + LE +I+G Sbjct: 183 IVSHLE--RILG 192 >gi|161615318|ref|YP_001589283.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364682|gb|ABX68450.1| hypothetical protein SPAB_03088 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 642 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL L + LE + Sbjct: 170 CLQFHLKVLDVEQIRHQLEHI 190 >gi|189499576|ref|YP_001959046.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] gi|189495017|gb|ACE03565.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] Length = 390 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 45/257 (17%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA---- 67 Q + GH L + +GR+ HA LF G +G GK T F A VL S A Sbjct: 4 QTIIGHTLQMSILQKAVVTGRLAHAYLFTGPEGTGKETAAFELA-KVLNCTTGSSALDTG 62 Query: 68 ---PVRMC-----------------------NPDPCSPFVKQMA-SHALHDFL------- 93 R C DP K+ A + ++ L Sbjct: 63 SCGTCRSCRDIDAFLHPDIEYVFPVESALLEKNDPAKAENKKTAEARERYESLIEQKKQN 122 Query: 94 -YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 Y + S++ G I +++ ++ S ++ ++ + ++ +AAN LLK Sbjct: 123 PYFTPSMDRSMG-----ILTEQVTALQQKASFMPVEKGKKIFILSQPEKLHPSAANKLLK 177 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 LEEPP+ VLFIL+S +L TIRSRC ++KF+ + + L + LE+ + + F Sbjct: 178 LLEEPPEHVLFILVSSRPENVLPTIRSRCQTLKFSRIKPSELDEWLERKHSGIQNDTKRF 237 Query: 213 VKIAAYGSVARAIKILH 229 + + G++ A IL+ Sbjct: 238 ISGFSRGNLRVATDILN 254 >gi|255311138|ref|ZP_05353708.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 6276] gi|255317439|ref|ZP_05358685.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 6276s] gi|296435852|gb|ADH18026.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/9768] gi|296436778|gb|ADH18948.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/11222] gi|296437712|gb|ADH19873.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/11074] gi|297140211|gb|ADH96969.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/9301] Length = 466 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R HA +F G +G GK TL +A + QNP Sbjct: 9 RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C A+ + L S++ + +++IR+I + Sbjct: 69 TQDQEPCNQC---------------AICKEISLGTSMDVIEIDGASHRGIEDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC Sbjct: 114 LFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + +SE + L + K G ++ R+ + AA GS+ A + Y Sbjct: 174 KMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225 >gi|261404007|ref|YP_003240248.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. Y412MC10] gi|261280470|gb|ACX62441.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp. Y412MC10] Length = 571 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 8 RAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P C + C +++ S A+ D + + N V+EIR +R + Sbjct: 68 PAEEPCNAC--EAC----RRITSGAVMDVQEIDAASNR---------GVEEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 YAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S LEQ+ Sbjct: 173 FDFRRVSLEEQTGRLEQI 190 >gi|312793983|ref|YP_004026906.1| DNA-directed DNA polymerase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181123|gb|ADQ41293.1| DNA-directed DNA polymerase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 320 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 19/182 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HA +FEGE+G+GK L ++ VL + + C + +H D Sbjct: 22 RPFHAYIFEGEKGLGKKLLAMTFSKQVLCEKKIACGVCKSCR-------LFDALTHP--D 72 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F + K + + I+VD IR I +S +V +I + M+ +A NALL Sbjct: 73 FKII------KRDEDKKEISVDAIREIIKDISRGPIFASKKVYIIQEAEEMSTSAQNALL 126 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K+LEEPP+ LFIL + +L T+ SR L + F S + + E LK G++ K D Sbjct: 127 KTLEEPPEYALFILTCNNLERLLPTVVSRSLVLSFKRYSSSEIS---EILKSHGYEPK-D 182 Query: 212 FV 213 +V Sbjct: 183 YV 184 >gi|229846868|ref|ZP_04466975.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 7P49H1] gi|229810357|gb|EEP46076.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 7P49H1] Length = 688 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KTIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] Length = 558 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L +GR+ HA +F G +G GK T A + Sbjct: 8 REWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNCTGR 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C + ++ D + + + N +DEIR +R + Sbjct: 68 EGAEPCNRC--ESCRAVNEGISV----DVIEIDAASN---------RGIDEIRDLREKIR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +RV +ID V + A NALLK+LEEPP+ + IL + + TI SRC Sbjct: 113 FAPAAGRYRVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F + ++ K L+++ Sbjct: 173 FDFRRIIPADIIKRLKEV 190 >gi|254361787|ref|ZP_04977922.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia haemolytica PHL213] gi|153093322|gb|EDN74318.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia haemolytica PHL213] Length = 685 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V +PC A H D + + + K V++ R + Sbjct: 63 ------NCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +L ++ + + LE Sbjct: 168 SRCMQFHLRALEQSQIARHLE 188 >gi|148244580|ref|YP_001219274.1| DNA polymerase III tau and gamma subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326407|dbj|BAF61550.1| DNA polymerase III tau and gamma subunit [Candidatus Vesicomyosocius okutanii HA] Length = 523 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 18/204 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + +K L + +HH LF G +G+GK ++ +A + Sbjct: 7 VLARKYRPHSFTELVGQTNTKKTLINALNANNVHHGFLFTGTRGVGKTSIARIFAKSINC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ C K + D + L + TG VD +R I Sbjct: 67 EKGVSSTPCGKCST--CIEIDKGQSI----DLIELDAA--SHTG-------VDNMRSILE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NTQYMPSKNRYKIYLIDEVHMLSNSSFNALLKTLEEPPEHVKFLLATTNPQKLPVTILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQLKIM 204 CL L+ + + L QLK + Sbjct: 172 CLQFTLQQLTHDEI---LGQLKFI 192 >gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aceris str. M302273PT] Length = 461 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|261491572|ref|ZP_05988155.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494932|ref|ZP_05991401.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309341|gb|EEY10575.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312698|gb|EEY13818.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V +PC A H D + + + K V++ R + Sbjct: 63 ------NCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +L ++ + + LE Sbjct: 168 SRCMQFHLRALEQSQIARHLE 188 >gi|167957160|ref|ZP_02544234.1| DNA polymerase III subunit gamma/tau [candidate division TM7 single-cell isolate TM7c] Length = 362 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T Sbjct: 9 RKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTT-------------- 54 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C +Q +DF + + L+ + +VD+IR++ + Sbjct: 55 --------CARILAKKINEQSGVTDDNDFAFNVFELDAASNN-----SVDDIRKLIEQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGNYKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L EQ I D + A G++ A+ I D+++S Sbjct: 162 FDFKRITISDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIF----DRVVS 215 >gi|68250239|ref|YP_249351.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 86-028NP] gi|68058438|gb|AAX88691.1| DNA polymerase III subunit gamma/tau [Haemophilus influenzae 86-028NP] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KTIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|145639210|ref|ZP_01794817.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittII] gi|145271772|gb|EDK11682.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittII] gi|309750786|gb|ADO80770.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae R2866] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|295133759|ref|YP_003584435.1| DNA polymerase III subunit gamma/tau [Zunongwangia profunda SM-A87] gi|294981774|gb|ADF52239.1| DNA polymerase III subunit gamma/tau [Zunongwangia profunda SM-A87] Length = 623 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 41/241 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L+ + ALLF G +G+GK T A + N D Sbjct: 9 RKYRPQTFKDVVGQQAITNTLANAIAHNHLAQALLFTGPRGVGKTTCARILAKMI--NQD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +++P DF + + L+ + +VD+IR + + Sbjct: 67 GTQSPD--------------------EDFAFNIFELDAASNN-----SVDDIRNLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGTYKVYIIDEVHMLSTSAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAAY---GSVARAIKILHYDCDKII 236 F ++ + A + LK + G +++ D ++I A G++ A+ I D+++ Sbjct: 162 FDFKRIT---VTDAKDYLKYIAEQEGVNAEEDALQIIAQKADGAMRDALSIY----DRVV 214 Query: 237 S 237 S Sbjct: 215 S 215 >gi|90580017|ref|ZP_01235825.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14] gi|90438902|gb|EAS64085.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14] Length = 741 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKCA------TCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL L + LE Sbjct: 170 CLQFHLKHLDHQQIQTQLE 188 >gi|292493699|ref|YP_003529138.1| DNA polymerase III subunits gamma and tau [Nitrosococcus halophilus Nc4] gi|291582294|gb|ADE16751.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus halophilus Nc4] Length = 531 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRNFTQLVGQEHVVRALINGLDNDRLHHAFLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + + D + + + +TG VD+ R + Sbjct: 65 EEGVGSTPCGNCQ------NCQAIDAGSFVDLIEVDAA--SRTG-------VDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGRYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTDPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL ++ ++L K L + +I + A GS+ A+ +L Sbjct: 170 CLQFNLRRITPQVIASHLDKILSEEQIPSEFQALTLIARTAEGSMRDALSLL 221 >gi|257454969|ref|ZP_05620217.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60] gi|257447679|gb|EEV22674.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60] Length = 697 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 15/191 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L + R+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPKNFHELLGQEHVSKALINAIHNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + S D + + + K V++ R + Sbjct: 64 ETGVTSEPCGVCG------VCQSIDSGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 109 NVPYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISR 168 Query: 181 CLSIKFNSLSE 191 CL L + Sbjct: 169 CLQFVLRPLPQ 179 >gi|241662731|ref|YP_002981091.1| DNA polymerase III subunits gamma and tau [Ralstonia pickettii 12D] gi|240864758|gb|ACS62419.1| DNA polymerase III, subunits gamma and tau [Ralstonia pickettii 12D] Length = 733 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 24/198 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPDFSKA 67 L G E + K L+ R+HHA LF G +G+GK TL G Q + Sbjct: 18 LVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCVGADGQG-GITAQ 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P +C C+ ++ + D++ + + N VDE+ ++ Sbjct: 77 PCGVCRA--CT----EIDAGRFVDYIEMDAASN---------RGVDEMAQLLDRAIYAPT 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SRCL Sbjct: 122 SGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 181 Query: 188 SLSENNLYKALEQLKIMG 205 + ++ L+ +I+G Sbjct: 182 QMPPGHIVSHLD--RILG 197 >gi|187928510|ref|YP_001898997.1| DNA polymerase III subunit delta' [Ralstonia pickettii 12J] gi|187725400|gb|ACD26565.1| DNA polymerase III, delta prime subunit [Ralstonia pickettii 12J] Length = 336 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 10/159 (6%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A +L P P C C+ F + Sbjct: 19 AKLPHAILLNGQAGTGKRDFAMHFAQSLLCDTPAADGQPCGTCAA--CNWFAQGNHPDFH 76 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ D + K +I ++++R + + + + RV+++ P+D + Sbjct: 77 LVRPEAMEDAPETEKDADGKKKAPSKIIRMEQVRNLIEGVGVGTHRAGLRVVVLYPLDAL 136 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 137 QTEGANALLKTLEEPPQNTVFLLVTDRIDRILPTILSRC 175 >gi|76789059|ref|YP_328145.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis A/HAR-13] gi|237802758|ref|YP_002887952.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis B/Jali20/OT] gi|237804680|ref|YP_002888834.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis B/TZ1A828/OT] gi|76167589|gb|AAX50597.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A/HAR-13] gi|231272980|emb|CAX09892.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis B/TZ1A828/OT] gi|231273992|emb|CAX10785.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis B/Jali20/OT] Length = 466 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R HA +F G +G GK TL +A + QNP Sbjct: 9 RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C A+ + L S++ + +++IR+I + Sbjct: 69 TQDQEPCNQC---------------AICKEISLGTSMDVIEIDGASHRGIEDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC Sbjct: 114 LFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + +SE + L + K G ++ R+ + AA GS+ A + Y Sbjct: 174 KMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225 >gi|270291184|ref|ZP_06197407.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4] gi|270280580|gb|EFA26415.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4] Length = 578 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 29/241 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L + + HA LF G +G GK + +A V N Sbjct: 8 RVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K + +PC+ + + L+D + + + N V+EIR IR Sbjct: 66 YLK------DGEPCNECATCRAITDGNLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKII 236 F ++ Y LEQ K + +D K + AA G + A+ IL D++I Sbjct: 171 QRFDFKRITPTQSYDRMVYILEQ-KGIEYDPKALSIIAKAAEGGMRDALSIL----DQVI 225 Query: 237 S 237 S Sbjct: 226 S 226 >gi|301169970|emb|CBW29574.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae 10810] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|312877613|ref|ZP_07737571.1| DNA-directed DNA polymerase [Caldicellulosiruptor lactoaceticus 6A] gi|311795623|gb|EFR11994.1| DNA-directed DNA polymerase [Caldicellulosiruptor lactoaceticus 6A] Length = 322 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 19/182 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HA +FEGE+G+GK L ++ VL + + C + +H D Sbjct: 24 RPFHAYIFEGEKGLGKKLLAMTFSKQVLCEKKIACGVCKSCR-------LFDALTHP--D 74 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F + K + + I+VD IR I +S +V +I + M+ +A NALL Sbjct: 75 FKII------KRDEDKKEISVDAIREIIKDISRGPIFASKKVYIIQEAEEMSTSAQNALL 128 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K+LEEPP+ LFIL + +L T+ SR L + F S + + E LK G++ K D Sbjct: 129 KTLEEPPEYALFILTCNNLERLLPTVVSRSLVLSFKRYSSSEIS---EILKSHGYEPK-D 184 Query: 212 FV 213 +V Sbjct: 185 YV 186 >gi|15605057|ref|NP_219841.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis D/UW-3/CX] gi|3328753|gb|AAC67929.1| DNA Pol III Gamma and Tau [Chlamydia trachomatis D/UW-3/CX] gi|297748464|gb|ADI51010.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC] gi|297749344|gb|ADI52022.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC] Length = 466 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R HA +F G +G GK TL +A + QNP Sbjct: 9 RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C A+ + L S++ + +++IR+I + Sbjct: 69 TQDQEPCNQC---------------AICKEISLGTSMDVIEIDGASHRGIEDIRQINETV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC Sbjct: 114 LFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + +SE + L + K G ++ R+ + AA GS+ A + Y Sbjct: 174 KMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225 >gi|319896923|ref|YP_004135118.1| DNA polymerase iii/DNA elongation factor iii, tau and gamma subunits [Haemophilus influenzae F3031] gi|317432427|emb|CBY80782.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae F3031] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIISALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|325122011|gb|ADY81534.1| DNA polymerase III, delta prime subunit [Acinetobacter calcoaceticus PHEA-2] Length = 326 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK ++ VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKQFLAWVLC---LNKQPQGPCGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRVI+I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVIVIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ +L++ + +TIRSR Sbjct: 139 EEPGERVVLLLLADHYLKLPATIRSR 164 >gi|312889163|ref|ZP_07748720.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter paludis DSM 18603] gi|311298325|gb|EFQ75437.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter paludis DSM 18603] Length = 600 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 16/192 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G + I L + ++ A LF G +G+GK T A + N Sbjct: 9 RKYRPVTFDTVVGQQHITNTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTI--NCT 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 +A + C D C F ++ S +H+ S + +V++IR + + Sbjct: 67 NLQAGIEACGECDSCKAF-QRGNSFNVHELDAASNN------------SVEDIRSLIEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RIPPQAGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNL 194 FN + +++ Sbjct: 174 IFDFNRIKVDDM 185 >gi|291460808|ref|ZP_06600198.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291416581|gb|EFE90300.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 563 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 17/189 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G + + L SG++ HA LF G +G GK + +A V +NP P +C Sbjct: 17 LKGQGAVTEALRNQVRSGKIGHAYLFCGTRGTGKTSAAKIFARAVNCENPQDGN-PCNLC 75 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 +++ S + + L + + N V++IR+IR + +G +R Sbjct: 76 RS------CREILSGSSMNVLEMDAASNN---------GVEDIRKIREQVEYPPVSGRYR 120 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ A NA LK+LEEPP+ V+FIL + + TI SRC F +S Sbjct: 121 VYIIDEVHMLSAAAFNAFLKTLEEPPEYVVFILATTEPNRLPITILSRCQRYDFRRISSE 180 Query: 193 NLYKALEQL 201 + + L ++ Sbjct: 181 VIAERLGEI 189 >gi|148827061|ref|YP_001291814.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittGG] gi|148718303|gb|ABQ99430.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittGG] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|145634442|ref|ZP_01790152.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittAA] gi|145268422|gb|EDK08416.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittAA] Length = 688 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|325279833|ref|YP_004252375.1| DNA polymerase III, subunits gamma and tau [Odoribacter splanchnicus DSM 20712] gi|324311642|gb|ADY32195.1| DNA polymerase III, subunits gamma and tau [Odoribacter splanchnicus DSM 20712] Length = 369 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 22/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L + ++ A LF G +G+GK T +A + Sbjct: 9 RKYRPASFDTVVGQLAITSTLRNAIVNHQLAQAYLFTGPRGVGKTTCARIFAKTI---NC 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P N +PC+ A +A SLN + +VD+IR + + Sbjct: 66 LNLQP----NAEPCNECESCKAFNA-------GRSLNIHELDAASNNSVDDIRGLVEQVR 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G + V +ID V ++ +A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 115 ILPQVGKYSVYIIDEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQI 174 Query: 184 IKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + + + L+ + I ++ D + A G++ A+ I D+++S Sbjct: 175 YDFNRMKVGDTVEHLKYISAKEGITAEEAALDVIAQKADGAMRDALSIF----DQVVS 228 >gi|304385469|ref|ZP_07367814.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus acidilactici DSM 20284] gi|304328676|gb|EFL95897.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus acidilactici DSM 20284] Length = 578 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 29/241 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L + + HA LF G +G GK + +A V N Sbjct: 8 RVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K + +PC+ + + L+D + + + N V+EIR IR Sbjct: 66 YLK------DGEPCNECATCRAITDGNLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKII 236 F ++ Y LEQ K + +D K + AA G + A+ IL D++I Sbjct: 171 QRFDFKRITPTQSYDRMVYILEQ-KGIEYDPKALSIIAKAAEGGMRDALSIL----DQVI 225 Query: 237 S 237 S Sbjct: 226 S 226 >gi|328956610|ref|YP_004373996.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4] gi|328672934|gb|AEB28980.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4] Length = 605 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 30/266 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + I + L + HA LF G +G GK + +A + P+ Sbjct: 8 RVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFA-KAINCPN 66 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +PC+ + + L+D + + + N V+EIR IR Sbjct: 67 LKDG-------EPCNECEMCQSITQGQLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SR Sbjct: 111 AKYAPTSAEYKVYIIDEVHMLTTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L Q KI + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISVRDSCERMAYILGQEKIEYQEEALTVIARAAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELL 263 D + + E A+ + EL+ Sbjct: 227 YGDDSVTV---ENAMSVTGSLTQELV 249 >gi|237786522|ref|YP_002907227.1| DNA polymerase III subunit delta' [Corynebacterium kroppenstedtii DSM 44385] gi|237759434|gb|ACR18684.1| DNA polymerase III, delta' subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 452 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 23/207 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS--H 87 S M HA LF G G G++ +A + MC + +P Q + Sbjct: 79 SAHMTHAWLFTGPPGAGRSVAAKAFAASL------------MCKEE--TPGCGQCEACRT 124 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 AL ++ P+ VI V ++R + S T WRV++++ D +N A Sbjct: 125 ALAGTHTDIVTIVPEG----VVIPVKQVRDMIEAASRMPTTAQWRVVIVEDADRLNDAGA 180 Query: 148 NALLKSLEEPPQKVLFILISHASPT--ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 NALLKS+EEPP + +FIL + ++ + TIRSRC + + S + + L +G Sbjct: 181 NALLKSIEEPPPRTVFILCAPSTDPDDVHVTIRSRCRHVYIPTPSIDEVKHILADDTALG 240 Query: 206 WDSKR-DFVKIAAYGSVARAIKILHYD 231 K+ D+ + G V RA ++ D Sbjct: 241 LTDKQIDWAASVSGGHVGRAKRLASDD 267 >gi|300087799|ref|YP_003758321.1| DNA-directed DNA polymerase subunit delta' [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527532|gb|ADJ26000.1| DNA-directed DNA polymerase, delta prime subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 339 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 10/145 (6%) Query: 42 EQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP 101 E G K TL R+ VL N +AP C D C + + D Y+ + + Sbjct: 36 EHG-SKHTLATRFT-QVL-NCTADEAPCGQC--DTCIKIDRGL----FPDLQYIHLA-SD 85 Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + K +T I +D+IR + + +S G +RV++++ D ++ +AANALLK++EEPP Sbjct: 86 ENNKKKTEIAIDQIRELIHQISFPPYQGRYRVVVVEEADKLSLSAANALLKTIEEPPDNT 145 Query: 162 LFILISHASPTILSTIRSRCLSIKF 186 +FIL++ I TIRSRC ++ Sbjct: 146 VFILLTARVEAIPETIRSRCFLLEL 170 >gi|110834636|ref|YP_693495.1| DNA polymerase III subunits gamma and tau [Alcanivorax borkumensis SK2] gi|110647747|emb|CAL17223.1| DNA polymerase III, gamma and tau subunits [Alcanivorax borkumensis SK2] Length = 615 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSRCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P +++ D + + + K V++ R + Sbjct: 65 EQGVSARPCGVC------PTCQEITDGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + L+ L Sbjct: 170 CLQFSLKALPAEQIAGHLKTL 190 >gi|304407306|ref|ZP_07388959.1| DNA polymerase III, subunits gamma and tau [Paenibacillus curdlanolyticus YK9] gi|304343747|gb|EFM09588.1| DNA polymerase III, subunits gamma and tau [Paenibacillus curdlanolyticus YK9] Length = 597 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 22/203 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + G I + L R+ HA LF G +G GK + A V + Sbjct: 8 RAWRPQTFHDMVGQRHIIRTLQNAIREDRVSHAYLFNGPRGTGKTSAAKILAKAV----N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P+PC+ + + + D + + + N +DEIR IR Sbjct: 64 CERGPA----PEPCNECDACLGITAGTVMDVVEIDAASNRG---------IDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 111 VRYAPSEVRYKVYIIDEVHMLTTEAFNALLKTLEEPPGHVIFILATTEPHKLPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIM 204 F +S L + E+L+++ Sbjct: 171 QRFDFRQVS---LEEQTERLRLI 190 >gi|315126344|ref|YP_004068347.1| DNA polymerase III delta' subunit [Pseudoalteromonas sp. SM9913] gi|315014858|gb|ADT68196.1| putative DNA polymerase III delta' subunit [Pseudoalteromonas sp. SM9913] Length = 304 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D+E+ L+Q Y + R HHA LF G G+GK L + A +L + S+ PC Sbjct: 8 DVEQRLAQSYKAQRFHHAQLFCGPIGVGKFELSDQLANSLLCHNTQSQLSAPNSVLTPCG 67 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q S +L+ L ++ T I VD+IR I F+ +A +V +I+ Sbjct: 68 ----QCKSCSLN--LAGTHPDKRVTQVEGQSIGVDDIRGISDFMHQSAAQNGNKVAIIEN 121 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + M AANALLK+LEEP IL + + +TI SRC Sbjct: 122 CEKMTTAAANALLKTLEEPSNSRFLILTTSQVAQLPATILSRC 164 >gi|262375370|ref|ZP_06068603.1| DNA polymerase III delta prime subunit [Acinetobacter lwoffii SH145] gi|262309624|gb|EEY90754.1| DNA polymerase III delta prime subunit [Acinetobacter lwoffii SH145] Length = 326 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 10/149 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ H LLF G++G GK ++ VL ++ P C ++K +H Sbjct: 26 KLGHGLLFYGKKGCGKEAFTQQFLAWVL---CLNRQPAEPCGECSSCQWLK-ADTHPN-- 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 Y+ S + K I +++IR + F+ T + WRVI+I+P + +N +ANALL Sbjct: 80 --YVHISTDEDNKKQNAKIKIEKIRDLLPFVQQTVDG--WRVIVIEPAEALNIASANALL 135 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSR 180 K+LEEP + IL+++ + +TIRSR Sbjct: 136 KTLEEPGDNTVIILLANHYLKLPATIRSR 164 >gi|312128357|ref|YP_003993231.1| DNA-directed DNA polymerase [Caldicellulosiruptor hydrothermalis 108] gi|311778376|gb|ADQ07862.1| DNA-directed DNA polymerase [Caldicellulosiruptor hydrothermalis 108] Length = 320 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 15/166 (9%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G+GK L ++ VL + + C + +H DF Sbjct: 25 HAYIFEGEKGLGKKLLAMTFSKQVLCEKKLACGACKSCR-------LFDALTHP--DFKL 75 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + K + R I+VD IR I +S +V +I + M+ +A NALLK+L Sbjct: 76 I------KRDEDRKEISVDAIREIIKDISRGPIFASKKVYIIQEAEEMSTSAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 EEPP+ LFIL + +L T+ SR L + F S + + + L+ Sbjct: 130 EEPPEYALFILTCNNLERLLPTVVSRSLVLSFKRYSSSEISEILKN 175 >gi|148825823|ref|YP_001290576.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittEE] gi|148715983|gb|ABQ98193.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittEE] Length = 688 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|16273148|ref|NP_439385.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae Rd KW20] gi|260581148|ref|ZP_05848968.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae RdAW] gi|1169397|sp|P43746|DPO3X_HAEIN RecName: Full=DNA polymerase III subunit gamma/tau gi|1574159|gb|AAC22882.1| DNA polymerase III, subunits gamma and tau (dnaX) [Haemophilus influenzae Rd KW20] gi|260092176|gb|EEW76119.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae RdAW] Length = 688 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|126667399|ref|ZP_01738371.1| DNA polymerase III subunit delta' [Marinobacter sp. ELB17] gi|126628155|gb|EAZ98780.1| DNA polymerase III subunit delta' [Marinobacter sp. ELB17] Length = 340 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 16/154 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP----FVKQMASH 87 R+ HAL+ GE+G+GK AG +L + P M P C +K+ SH Sbjct: 23 RLPHALIINGERGVGKRAWADAVAGLLLCD-QLQTDPQGM--PQACGHCKQCALKRAGSH 79 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D + P+ + ++ + +IR + F S + G+ ++ +ID D +N NAA Sbjct: 80 P--DVRVYA----PEKSR---MVRIVQIRELINFASASPQVGHRKIAIIDRADQLNINAA 130 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEP + +L+ + +L TIRSRC Sbjct: 131 NALLKTLEEPSGDTVLLLLQESGRPLLPTIRSRC 164 >gi|317131169|ref|YP_004090483.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] gi|315469148|gb|ADU25752.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] Length = 559 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 21/194 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G I L +GR+ HA LF G +G GK T A V +P Sbjct: 7 RKWRPRTFEDVAGQPQIVATLLGELRAGRVAHAYLFTGSRGTGKTTCAKILAKAVNCLHP 66 Query: 63 DFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N DPC + + +L D + + + N VD IR +R Sbjct: 67 Q---------NGDPCGECAVCRGIDDGSLTDVVEIDAASN---------NGVDSIRALRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 T +RV +ID ++ A NALLK+LEEPP VLFIL + + I +TI SR Sbjct: 109 ETVYTPAAAKYRVYIIDEAHMLSAGAFNALLKTLEEPPAYVLFILATTEAHKIPATILSR 168 Query: 181 CLSIKFNSLSENNL 194 C F + ++ Sbjct: 169 CQRFDFRRIPPADI 182 >gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805] gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805] Length = 587 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 30/223 (13%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P++++ +L G E I L SGR+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L N S+ P P+PC +A+ D + + + N TG V Sbjct: 60 LARSL-NCLNSEGP----TPEPCGHCELCTTIAAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 +L TI SRC F + +ALE + + W ++++ + I Sbjct: 166 VLPTILSRCQRFDFRRIP----LEALE--RHLTWIAEQETIPI 202 >gi|103486288|ref|YP_615849.1| DNA polymerase III subunits gamma and tau [Sphingopyxis alaskensis RB2256] gi|98976365|gb|ABF52516.1| DNA polymerase III, subunits gamma and tau [Sphingopyxis alaskensis RB2256] Length = 565 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 27/246 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L R+ HA L G +G+GK + R L Sbjct: 31 VLARKYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTA-RLIAKALN 89 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P DPC A + H D + + + N TG VD++R Sbjct: 90 CIGPDGQGGPTI----DPCGVCEPCRAITEGRHIDVIEMDAASN--TG-------VDDVR 136 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T Sbjct: 137 EIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVT 196 Query: 177 IRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRD---FVKIAAYGSVARAIKIL---- 228 + SRC ++ + L+ L+ G +++ + AA GSV + IL Sbjct: 197 VLSRCQRFDLRRITPDMLFAHFSAILQKEGVEAEAPAIWLIANAAEGSVRDGLSILDQAI 256 Query: 229 -HYDCD 233 H D D Sbjct: 257 AHADLD 262 >gi|145641123|ref|ZP_01796704.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] gi|145274284|gb|EDK14149.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 22.4-21] Length = 688 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|323499365|ref|ZP_08104341.1| DNA polymerase III subunit delta' [Vibrio sinaloensis DSM 21326] gi|323315550|gb|EGA68585.1| DNA polymerase III subunit delta' [Vibrio sinaloensis DSM 21326] Length = 320 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 SGR +A + E G+G L ++ V+ + ++ C+ S + Q +H Sbjct: 21 SGRFSNAAMLVAEPGLGGEQLIDVFSRAVMCS-NYEHEACGFCH----SCQLMQSGNHP- 74 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK I+V++IR ++ G R+ +I+P + MN +AAN Sbjct: 75 -DF----HLVKPEKEGK---AISVEQIRHCNRQAQESSQLGGLRLFIIEPAESMNESAAN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LF+L++H + ++L TI SRC Sbjct: 127 ALLKTLEEPSSHCLFLLVTHRANSLLPTITSRC 159 >gi|315453093|ref|YP_004073363.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179] gi|315132145|emb|CBY82773.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179] Length = 489 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 18/214 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + Q L G E + K LS GR+ HA LF G +G GK T R LQ Sbjct: 7 YRPKHFQDLVGQESVSKTLSLALEQGRLAHAYLFSGLRGSGK-TSSARIFARALQ---CE 62 Query: 66 KAPVRM-CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 KAP C D C+ V + + + D + + + N + R VI + +Y S+ Sbjct: 63 KAPTSTPC--DVCANCVDALQNKHV-DIIEMDGASNRRIEDIREVI-----EQTKYQPSM 114 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G +++ +ID V + + A NALLK+LEEPP +V FIL + + +TI SR Sbjct: 115 ----GAFKIFIIDEVHMLTKEAFNALLKTLEEPPPRVKFILATTDPLKLPATILSRTQHF 170 Query: 185 KFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAA 217 F + + L+ L + G + ++I A Sbjct: 171 HFKKIPPKAIVAHLQHILSLEGVQYQEGVLEILA 204 >gi|295694719|ref|YP_003587957.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM 2912] gi|295410321|gb|ADG04813.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM 2912] Length = 664 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I + L +GR+ HA LF G +G GK ++ A V Sbjct: 8 REWRPQLFADVVGQPHIVRTLQNALRNGRLAHAYLFTGPRGTGKTSVAKILAKAVNCEQG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P CN + + ++ D + + + N +DE+R +R + Sbjct: 68 SGEEPCNQCN------ACRGIMDGSVLDVVEIDAASN---------RGIDEVRELRDQVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +V +ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC Sbjct: 113 YAPTQVRHKVYIIDEVHMLTPEAFNALLKTLEEPPEHVIFILATTEPHKVPATIMSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F + ++ + ++ + Sbjct: 173 FAFQRIYAGDMAERMKSI 190 >gi|145636909|ref|ZP_01792574.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittHH] gi|145269990|gb|EDK09928.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittHH] Length = 688 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDSASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|313201406|ref|YP_004040064.1| DNA polymerase III subunits gamma and tau [Methylovorus sp. MP688] gi|312440722|gb|ADQ84828.1| DNA polymerase III, subunits gamma and tau [Methylovorus sp. MP688] Length = 586 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 21/202 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+HHA LF G +G+GK TL A + + P +C+ C + D Sbjct: 12 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGITAHPCGVCSA--CVDIDRGR----FVD 65 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L + + N + VD +R + G ++V +ID V ++R+A NA+L Sbjct: 66 MLEVDAASNTQ---------VDSMRELLDNAQYAPTVGRFKVYIIDEVHMLSRSAFNAML 116 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K+LEEPP V FIL + + T+ SRCL +S + L+++ + D D Sbjct: 117 KTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFNLRQMSTPAITSHLQEV-LAKEDIPSD 175 Query: 212 FVKI-----AAYGSVARAIKIL 228 + + AA GS+ A+ +L Sbjct: 176 SIALQLISRAANGSMRDALSLL 197 >gi|291326691|ref|ZP_06125481.2| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131] gi|291313231|gb|EFE53684.1| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131] Length = 652 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 10 VLARKWRPQKFSDVVGQQHVLTALANGLTHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C + L + G++ +I +D R + Sbjct: 70 ETGITASPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 106 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 107 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 166 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 + TI SRCL +L + + LE + I R + AA GS+ A+ + Sbjct: 167 LPVTILSRCLQFHLKALDVTQISEQLELILNAENIEHDQRARQLIARAADGSLRDALSL 225 >gi|299066796|emb|CBJ37990.1| DNA polymerase III, delta' subunit [Ralstonia solanacearum CMR15] Length = 336 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA- 88 ++ HA+L G+ G GK +A G + P P + C C+ F + +H Sbjct: 19 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPTADGRPCQACAA--CNWFAQ--GNHPD 74 Query: 89 LHDFLYLSYSLNPKT-----GKWRT---VITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 H + +P T GK + +I ++++R++ + + + RV+++ P+D Sbjct: 75 FHLVRPEAMEESPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLD 134 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 135 ALQTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRC 175 >gi|218134396|ref|ZP_03463200.1| hypothetical protein BACPEC_02299 [Bacteroides pectinophilus ATCC 43243] gi|217989781|gb|EEC55792.1| hypothetical protein BACPEC_02299 [Bacteroides pectinophilus ATCC 43243] Length = 349 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 18/221 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + GH+ I++ L ++ HA + GEQG GK + +A LQ +P C Sbjct: 26 EIIGHDRIKEHLQNAIRLDKISHAYIINGEQGSGKNMIASIFA-KTLQCEKHGTSPCNEC 84 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 + Q S D + +++ P + I V+++R ++ + + + + Sbjct: 85 HS------CIQADSGNQPDIIRVTHE-KPAS------IGVEDVRGQLVGDIQIRPYSSKY 131 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID D M A NA+LK++EEPP+ + +L++ + +L TI SRC+ + + + Sbjct: 132 KIYIIDDADKMTVQAQNAILKTIEEPPEYGIIMLLTENADGLLQTILSRCVKLDLGPVED 191 Query: 192 NNLYKAL-EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 + + K L E+ I ++++ F A G + RA I+ D Sbjct: 192 SLIQKHLIEKFSIPDYEAR--FAVAFAQGCIGRAESIIVSD 230 >gi|163839160|ref|YP_001623565.1| DNA polymerase III subunit delta' [Renibacterium salmoninarum ATCC 33209] gi|162952636|gb|ABY22151.1| DNA polymerase III, delta' subunit [Renibacterium salmoninarum ATCC 33209] Length = 384 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HA LF G G G++ +A ++ + D ++ R C + HA H L Sbjct: 28 HAWLFTGPPGSGRSNAAKAFAATLICEQVDPAE---RGCG-----------SCHACHTVL 73 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 ++S +T I++DE R + + WR+I+I D M N LLK+ Sbjct: 74 AGTHSDVTFVETEKTTISIDEARELVTKAQDRPASARWRIIIIGDADRMAERTTNVLLKA 133 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRC 181 +EEPP + L+IL + + +L TIRSRC Sbjct: 134 IEEPPPRTLWILCTPSPADVLVTIRSRC 161 >gi|50085108|ref|YP_046618.1| DNA polymerase III subunits tau and gamma [Acinetobacter sp. ADP1] gi|49531084|emb|CAG68796.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter sp. ADP1] Length = 711 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGITSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + L Sbjct: 169 CLQFTLRPLAVDEITSHL 186 >gi|315607781|ref|ZP_07882774.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] gi|315250250|gb|EFU30246.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] Length = 615 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 16/191 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + L SG++ HA LF G +G+GK T +A + N + Sbjct: 8 RKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI--NCE 65 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 CN + C F +Q + Y + L+ + +V+ I+ + Sbjct: 66 HPHDDGEACNECESCKAFNEQRS--------YNIFELDAASNN-----SVENIKALMEQT 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI SRC Sbjct: 113 RIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQ 172 Query: 183 SIKFNSLSENN 193 F ++ N Sbjct: 173 IYDFERMTVPN 183 >gi|300726477|ref|ZP_07059923.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] gi|299776205|gb|EFI72769.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] Length = 614 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 20/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P+ + G + L S ++ HA LF G +G+GK T +A + +NP Sbjct: 9 RKYRPMTFASVVGQSALTTTLKNAVKSKKLAHAYLFCGPRGVGKTTCARIFAKVINCENP 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F + + Y + L+ + +V+ I+ + Sbjct: 69 REDGEACNEC--ESCKAFNEGRS--------YNIFELDAASNN-----SVENIKTLMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKI 227 F ++ N L+Q+ I D+ + + A G + A+ I Sbjct: 174 IYDFERMTVPNTIAHLKQIADKEGITYEDAALEVIAEKADGGMRDALSI 222 >gi|312623179|ref|YP_004024792.1| DNA-directed DNA polymerase [Caldicellulosiruptor kronotskyensis 2002] gi|312203646|gb|ADQ46973.1| DNA-directed DNA polymerase [Caldicellulosiruptor kronotskyensis 2002] Length = 320 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G+GK L ++ VL + + C F + Sbjct: 25 HAYIFEGEKGLGKKLLAMTFSKQVLCEEKLACGVCKSC--------------RLFDAFTH 70 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + L K + R I+VD IR I +S ++ +I + M+ +A NALLK+L Sbjct: 71 PDFKL-IKRDEDRKEISVDAIREIIKDISRGPIFATKKIYVIQEAEEMSTSAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 EEPP+ LFIL + +L T+ SR L + F S + + + L++ Sbjct: 130 EEPPEYALFILTCNNLERLLPTVISRSLVLSFKRYSSSEISEILKK 175 >gi|260579390|ref|ZP_05847272.1| DNA polymerase III, delta' subunit [Corynebacterium jeikeium ATCC 43734] gi|258602519|gb|EEW15814.1| DNA polymerase III, delta' subunit [Corynebacterium jeikeium ATCC 43734] Length = 415 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G G++ +A L P C + A+ D Sbjct: 46 MTHSWLFTGPPGSGRSIAAKVFA-TALVCPHGGCGECEQC---------RSAAAGTHPDI 95 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L++S TG V+TVDEIR + + WRV++++ D +N AANALLK Sbjct: 96 LWVST-----TG---VVLTVDEIRGAIHEAANMPTVARWRVVVVEDADRLNDAAANALLK 147 Query: 153 SLEEPPQKVLFILISHAS-PT-ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW-DSK 209 S+EEPP + +F+L + ++ P+ I T+RSRC + + S + L +G +++ Sbjct: 148 SVEEPPARTVFLLCAPSTDPSDIAITLRSRCRHVYVPTPSPAAVKGVLLSDATLGLNETQ 207 Query: 210 RDFVKIAAYGSVARA 224 + + G + RA Sbjct: 208 AQWAADVSAGHIGRA 222 >gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium NaphS2] gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium NaphS2] Length = 564 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E I + L +GR+ HA +F G +G+GK ++ +A + Sbjct: 5 VLARKWRPQVFEDVIGQEHITQTLVNAIKTGRLAHAYIFGGPRGVGKTSVARIFAKAINC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + + N +DEIR +R Sbjct: 65 AEGEPGIPCNRCRS------CREITEGNSVDVQEIDGASNR---------GIDEIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +R+ +ID V + A NALLK+LEEPP V FI + S + TI SR Sbjct: 110 SARYMPSASRYRIYVIDEVHMLTLPAFNALLKTLEEPPPHVKFIFATTESHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F ++ + LE++ Sbjct: 170 CQRFDFKRIALQKIVAYLEKI 190 >gi|288799735|ref|ZP_06405194.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332983|gb|EFC71462.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] Length = 591 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L + ++ HA LF G +G+GK T +A + N Sbjct: 9 RKYRPASFDTVVGQKALTETLKNAIKANKLAHAYLFCGPRGVGKTTCARIFAKTI--NCF 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A CN + C+ F +Q + + F + S N +V+ I+ + Sbjct: 67 TPTAQGEACNHCESCAAFNEQ---RSFNIFELDAASNN----------SVENIKALMEQT 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 114 RIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ ++ LE + Sbjct: 174 IYDFERMTVQDIVNHLESV 192 >gi|242372721|ref|ZP_04818295.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242349638|gb|EES41239.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 560 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 ++FD V G + K L G+ HA +F G +G GK ++ F A + L + Sbjct: 5 QSFDDV-----VGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNS 59 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P C + C + S D + + + N VDEIR IR Sbjct: 60 DDGE--PCNEC--EICRGITQGTNS----DVIEIDAASNN---------GVDEIRNIRDK 102 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 103 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 162 Query: 182 LSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 F ++S + + L+ + + +D +F+ A+ G + A+ I+ Sbjct: 163 QRFDFKAISMDQIVDRLKFVADSQSLDYDEAALEFIAKASEGGMRDALSIM 213 >gi|169830250|ref|YP_001716232.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis audaxviator MP104C] gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis audaxviator MP104C] Length = 447 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L + R+ HA LF G +G GK T A V Sbjct: 8 RTWRPQRFGEIVGQDHVVRTLQNAVRAERVAHAYLFCGPRGTGKTTAAKVLAKAVNCTER 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C + + + D L + + N VDE+R +R + Sbjct: 68 DGAEPCGECAS--CV----SIGTGSAVDVLEIDAASNRG---------VDEVRELRERVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 113 FHPAAGRFKVYIIDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F + +L LE++ Sbjct: 173 FDFRRIGRPDLVSRLEEV 190 >gi|153809049|ref|ZP_01961717.1| hypothetical protein BACCAC_03353 [Bacteroides caccae ATCC 43185] gi|149128382|gb|EDM19601.1| hypothetical protein BACCAC_03353 [Bacteroides caccae ATCC 43185] Length = 374 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 35/249 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKRRLIQEVREGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGVCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGK- 105 L +PD F + C ++ +++ + L++ LN + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRPFVINNPYFNLNHWLNEMDAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 SQALIYAKESDEILKKLSLKSSEGGFKITIVWLPEKMHPVCANKLLKLLEEPPEKTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSVA 222 +S A IL TI SR + + E ++ + L+ + I DS + IA A G+ Sbjct: 186 VSEAPDMILPTILSRTQRMNVRKIDEASIDRILQSKYSIQPADS----LSIAHLANGNFI 241 Query: 223 RAIKILHYD 231 +A++ +H + Sbjct: 242 KALETIHLN 250 >gi|145630854|ref|ZP_01786631.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] gi|144983514|gb|EDJ90982.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] Length = 688 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|68537045|ref|YP_251750.1| DNA polymerase III subunit delta' [Corynebacterium jeikeium K411] gi|68264644|emb|CAI38132.1| DNA polymerase III, delta' subunit [Corynebacterium jeikeium K411] Length = 415 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G G++ +A L P C + A+ D Sbjct: 46 MTHSWLFTGPPGSGRSIAAKVFA-TALVCPHGGCGECEQC---------RSAAAGTHPDI 95 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L++S TG V+TVDEIR + + WRV++++ D +N AANALLK Sbjct: 96 LWVS-----TTG---VVLTVDEIRGAIHEAANMPTVARWRVVVVEDADRLNDAAANALLK 147 Query: 153 SLEEPPQKVLFILISHAS-PT-ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW-DSK 209 S+EEPP + +F+L + ++ P+ I T+RSRC + + S + L +G +++ Sbjct: 148 SVEEPPARTVFLLCAPSTDPSDIAITLRSRCRHVYVPTPSPAAVKGVLLSDATLGLNETQ 207 Query: 210 RDFVKIAAYGSVARA 224 + + G + RA Sbjct: 208 AQWAADVSAGHIGRA 222 >gi|116750215|ref|YP_846902.1| DNA polymerase III subunits gamma and tau [Syntrophobacter fumaroxidans MPOB] gi|116699279|gb|ABK18467.1| DNA polymerase III, subunits gamma and tau [Syntrophobacter fumaroxidans MPOB] Length = 602 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + + G + + L S R+ H+ LF G +G+GK ++ A + Sbjct: 5 VIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ C+ + A D L + + N +D +R +R Sbjct: 65 ETGVTPTPCNVCSN--CTEIRQGNAV----DVLEIDGASN---------RGIDSVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V + A NALLK+LEEPP+ V+FI + I +TI SR Sbjct: 110 TVRYRPAKSRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + L L + Sbjct: 170 CQRFDFRRIPSHMLVDHLRHI 190 >gi|260584502|ref|ZP_05852249.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans ATCC 700633] gi|260158020|gb|EEW93089.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans ATCC 700633] Length = 573 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + K L + HA LF G +G GK + A + Sbjct: 8 RKWRPQKFEDMVGQTAVTKTLKNAIIHHKTSHAYLFTGPRGTGKTS-----AAKI----- 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 F+KA + NP +PC+ K + + D + + + N V+EIR I Sbjct: 58 FAKA-INCLNPQDGEPCNDCLLCKGITEGTIGDVIEIDAASNNG---------VEEIRDI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI Sbjct: 108 RDKARYAPTQATYKVYIIDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPATII 167 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SR F ++ + + + L Sbjct: 168 SRTQRFDFRRITNDEIIQRL 187 >gi|255530648|ref|YP_003091020.1| DNA polymerase III subunits gamma and tau [Pedobacter heparinus DSM 2366] gi|255343632|gb|ACU02958.1| DNA polymerase III, subunits gamma and tau [Pedobacter heparinus DSM 2366] Length = 602 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 20/216 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + ++ A LF G +G+GK T A + N Sbjct: 9 RKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTI--NCT 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A C C V H+ +F L + N +VD+IR + + Sbjct: 67 SLTAEQEACGT--CESCVSFQTGHSF-NFHELDAASNN---------SVDDIRSLIEQVR 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +++ +ID V ++ NA NA LK+LEEPP +FIL + IL TI SRC Sbjct: 115 IPPQAGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI 174 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 FN + ++ L ++ ++R+ + + A G Sbjct: 175 FDFNRIQVEDISGHLNKI------AQRENIAVEADG 204 >gi|124024914|ref|YP_001014030.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. NATL1A] gi|123959982|gb|ABM74765.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. NATL1A] Length = 319 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 17/202 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G + K L + HA LF G +G+G+ + +L K+ R Sbjct: 5 QNICGQDLAIKILKSAISKEHISHAYLFSGPEGVGRKKTAKIFIKSILDQNQEKKSTKRK 64 Query: 72 CN----PD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 N PD P Q S +S P+ I +++I+ I FL Sbjct: 65 INNNNHPDLLWVEPSYIVQGQSISQTKAILDGISMKSPPQ-------IRLNQIKEIIEFL 117 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +++I+ ++ +N +AANALLK+LEE LFILI+ +LSTIRSRC Sbjct: 118 GKKPFESERSIVIIEDIERINESAANALLKTLEETCTG-LFILITQRPEKLLSTIRSRCQ 176 Query: 183 SIKFNSLSENNLYKALEQLKIM 204 + F L++N + K +E+ +++ Sbjct: 177 IVPFIRLNDNQVNKIIEKSEVV 198 >gi|54022332|ref|YP_116574.1| DNA polymerase III subunit delta' [Nocardia farcinica IFM 10152] gi|54013840|dbj|BAD55210.1| putative DNA polymerase III delta' subunit [Nocardia farcinica IFM 10152] Length = 410 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 27/225 (12%) Query: 13 RLFGHEDIEKFLSQYY-------CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 RL G + +E L+ G M H+ LF G G G++ +A LQ Sbjct: 17 RLVGQDAVESELTAAAVAARAGSVEGAMTHSWLFTGPPGSGRSVAALCFAA-ALQ----- 70 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C DP +P + HA + ++ + I+ E+R I S Sbjct: 71 ------CT-DPGTPGCGRC--HACTTTMAGTHGDVRRVVPEGLSISTKEMREIVQIASRR 121 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA-SPTILS-TIRSRCLS 183 +TG W+V++I+ D + A N LLK +EEPP++ +F+L + + P +S T+RSRC Sbjct: 122 PSTGRWQVVVIEDADRLTEAAGNVLLKVVEEPPERTVFLLCAPSVDPEDISVTLRSRCRH 181 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 + + S + L + G D+K ++ + G V RA ++ Sbjct: 182 VHLVTPSVAAIATVLRERD--GLDAKTAEWAASVSGGHVGRARRL 224 >gi|309972967|gb|ADO96168.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae R2846] Length = 689 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|117925035|ref|YP_865652.1| DNA polymerase III subunits gamma/tau [Magnetococcus sp. MC-1] gi|117608791|gb|ABK44246.1| DNA polymerase III, gamma subunit [Magnetococcus sp. MC-1] Length = 605 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 26/252 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + L GR+ HA LF G +GIGK TL A + Sbjct: 9 VLARKWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMCLNC 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C V+ H D + + K V+++R + Sbjct: 69 GTGVTANPCGAC--DSCRAIVR--GEHP--DVFEVDAASRTK---------VEQMRELLD 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ T + +++ ++D V ++ ++ NALLK+LEEPP V FI + IL TI SR Sbjct: 114 GVAYTPSLSRYKIYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSR 173 Query: 181 CLSIKFNSLSENNLYKALEQ---LKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKII 236 C L + L + L ++ + +D + + AA GSV A+ +L D+ I Sbjct: 174 CQRYDLRRLDRDGLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLL----DQAI 229 Query: 237 S---SYIDLIHI 245 + +D H+ Sbjct: 230 AHGGGRVDYTHV 241 >gi|57234678|ref|YP_181279.1| DNA polymerase III, delta prime subunit [Dehalococcoides ethenogenes 195] gi|57225126|gb|AAW40183.1| DNA polymerase III, delta prime subunit [Dehalococcoides ethenogenes 195] Length = 339 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 14/217 (6%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ G + FL ++ HA +F G+ G+GK + +A + N + P + C Sbjct: 3 QIIGQDKAVSFLCNSLNQDKLCHAYVFYGQSGVGKKRMALSFAQAL--NCQAASPPCQEC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSY--SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P +++ + D +++ + + GK + I V ++ I++ SL G Sbjct: 61 ------PVCERIMAGNFPDVIHIELLSAEDSSDGKAKAEIGVKQVEDIQHAASLPPFEGK 114 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +I + ++ ++N LLK+LEEP + +FIL++ +L T+ SRC ++ Sbjct: 115 YKVFIIHQAEKLSVESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVLSRCQILELKYAE 174 Query: 191 ENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARAIK 226 +++A + G D K + + +YG V A++ Sbjct: 175 TGLIHEAFIK---QGLDEEKAELLSHLSYGRVGWAME 208 >gi|313672882|ref|YP_004050993.1| hypothetical protein Calni_0919 [Calditerrivibrio nitroreducens DSM 19672] gi|312939638|gb|ADR18830.1| hypothetical protein Calni_0919 [Calditerrivibrio nitroreducens DSM 19672] Length = 307 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 23/221 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 ++G + K+ + R + +F G +GIGK A L + F++ Sbjct: 2 IYGFDKYIKYFDGIIKNRRFANGYIFYGTEGIGKKLFAKEVARVALCKKGSSFNEN---- 57 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + C + + SH L T + + +DEIR I +++ G Sbjct: 58 CGCESC--ILVKADSHP---------DLTIYTNEGESSFGIDEIREISEGSYISSFMGGD 106 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 + ++D + + A NA LK+LEEP + +F LI+ I+ TI+SRC+ ++FN L Sbjct: 107 KFFILDNFHLLKKEACNAFLKTLEEPGENTVFFLITSQLDRIIPTIKSRCIHLRFNRLGN 166 Query: 192 NNLYKALEQLKIMGWDSK--RDFVKIAAYGSVARAIKILHY 230 +++ K L++L G+ + ++ + I+ GSV A+K + Y Sbjct: 167 DDIIKILKEL---GYSDEVIKNVLDISD-GSVLFALKHIKY 203 >gi|251792166|ref|YP_003006886.1| DNA polymerase III subunits gamma and tau [Aggregatibacter aphrophilus NJ8700] gi|247533553|gb|ACS96799.1| DNA polymerase III subunit tau [Aggregatibacter aphrophilus NJ8700] Length = 680 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 23/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFNEVVGQQHVLAALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V +PCS K + D + + + K V++ R + Sbjct: 63 ------NCVNGVTAEPCSECEHCKAIEEGNFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTIL 167 Query: 179 SRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC+ +L +L L+Q I D D + AA GS+ ++ + Sbjct: 168 SRCMQFHLKALEPQQISAHLADILQQENIPFEDLALDKLANAAQGSIRDSLSL 220 >gi|225387405|ref|ZP_03757169.1| hypothetical protein CLOSTASPAR_01158 [Clostridium asparagiforme DSM 15981] gi|225046450|gb|EEG56696.1| hypothetical protein CLOSTASPAR_01158 [Clostridium asparagiforme DSM 15981] Length = 329 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GH I++ +G + HA + GE G+GK +L +A +L + P R Sbjct: 5 KEILGHGPIKEHFFNAVITGNISHAYILSGEAGMGKKSLANAFALALLCEKGQAD-PCRQ 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGY 130 C+ KQ+ S D +Y+++ P + I VD++RR I + + + Sbjct: 64 CHA------CKQVMSGNHPDLIYVTHE-KPAS------IGVDDVRRQINDTIQVKPYSSA 110 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ ++D + M A NALLK++EEPP + +L++ + L TI SRC+ +K L Sbjct: 111 HKIYIVDEAEKMTVQAQNALLKTIEEPPAYAVILLLTTNAEAFLPTILSRCVQLKLKPLK 170 Query: 191 ENNL 194 + + Sbjct: 171 DGEV 174 >gi|332142051|ref|YP_004427789.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii str. 'Deep ecotype'] gi|327552073|gb|AEA98791.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P CN K++ D L + + K V++ R + Sbjct: 65 EEGQGANPCGQCN------TCKEIEQGNYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYKPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + L Sbjct: 170 CLQFNLKAMSREQIVGQL 187 >gi|299770406|ref|YP_003732432.1| hypothetical protein AOLE_10850 [Acinetobacter sp. DR1] gi|298700494|gb|ADI91059.1| hypothetical protein AOLE_10850 [Acinetobacter sp. DR1] Length = 326 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G++G GK + VL +K P C CS + + S ++++ Sbjct: 29 HGLLFYGKEGCGKHAFAKHFLAWVLC---LNKQPHGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRVI+I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVILIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|300704092|ref|YP_003745694.1| DNA polymerase III subunit delta' [Ralstonia solanacearum CFBP2957] gi|299071755|emb|CBJ43079.1| DNA polymerase III, delta' subunit [Ralstonia solanacearum CFBP2957] Length = 336 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 19 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPAADGQPCQTCAA--CNWFAQGNHPDFH 76 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ + K +I ++++R++ + + + RV+++ P+D + Sbjct: 77 LVRPEAMEEAPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLDAL 136 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ANALLK+LEEPPQ +F+L++ IL TI SRC + LE+ Sbjct: 137 QTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRCRQFPLQPPQPEAARQWLER 194 >gi|293364064|ref|ZP_06610800.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris A21JP2] gi|292552554|gb|EFF41328.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris A21JP2] Length = 827 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 18/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L S ++ HA +F G +G+GK ++ R +VL N Sbjct: 8 RKYRPSSFDEVRGQEHIIVTLKNIISSRKIGHAYVFSGPRGVGKTSVA-RIFANVL-NCM 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + R C D C F + S++ + VDEIR ++ + Sbjct: 66 HDENITRAC--DDC--------------FRQIKTSIDVVEMDAASNNGVDEIRDLKEKVE 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 110 HLPTMGRYKIYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRAQR 169 Query: 184 IKFNSLSENNLYKALEQL 201 F + N L K LE + Sbjct: 170 FNFRRIPTNILAKTLEDV 187 >gi|260582657|ref|ZP_05850446.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae NT127] gi|260094329|gb|EEW78228.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae NT127] Length = 688 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|302345179|ref|YP_003813532.1| hypothetical protein HMPREF0659_A5422 [Prevotella melaninogenica ATCC 25845] gi|302150162|gb|ADK96424.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 379 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 33/247 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G E +++ L Q R+ HALLF G QG GK L +A ++L Sbjct: 6 VIGQEAVKERLIQMVKEDRLPHALLFCGPQGAGKMALAMAFASYLLAGDEAEEATSSTVS 65 Query: 60 ---------QNPD--FS----KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKT 103 ++PD FS K P P S F K+ + + + Sbjct: 66 NARAMLRNWEHPDLHFSYPTIKLPSMSGEHQPVSADFAKEWHGLIMQGTYFTMNQWMNQM 125 Query: 104 G--KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 G + +IT E + L+L ++ G ++V +I + MN +AN LLK LEEPPQ Sbjct: 126 GATTQQAIITGAESDELSRVLALKSSQGGYKVSIIWLPERMNLTSANKLLKLLEEPPQGT 185 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +F+++ +L TI SR I +++ + +AL + + D+ +I A GS Sbjct: 186 IFLMVCEEPEKLLETIISRTQRIDVKRINDEAIEQALINKRGIDTDAAHRIARI-ANGSW 244 Query: 222 ARAIKIL 228 +A++ + Sbjct: 245 LKALEAM 251 >gi|229494803|ref|ZP_04388559.1| DNA polymerase III subunit delta [Rhodococcus erythropolis SK121] gi|229318299|gb|EEN84164.1| DNA polymerase III subunit delta [Rhodococcus erythropolis SK121] Length = 405 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 43/233 (18%) Query: 13 RLFGHEDIEKFLSQYYCSGR-------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 RL G D+E+ L S R M HA LF G G G++ +A LQ Sbjct: 9 RLVGQHDVEQSLRDAALSARGDSSGSEMTHAWLFTGPPGSGRSVAALCFAA-ALQ----- 62 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI------TVDEIRRIR 119 C D +P + HA + ++ G R +I +V +R I Sbjct: 63 ------CTSDG-APGCGEC--HAC------TTTMGGTHGDVRRIIPDGLSISVKGMREIV 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS-PTILS-TI 177 S TG W+VI+++ D + AANALLK +EEPP + + +L + + P +S T+ Sbjct: 108 NIASRRPTTGRWQVIVVEDADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTL 167 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 RSRC + + S ++ + L + G D +R +IAA G V RA ++ Sbjct: 168 RSRCRHMPLVTPSVESIAQVL--IDRDGLDPER--ARIAASISGGHVGRARRL 216 >gi|22124967|ref|NP_668390.1| DNA polymerase III subunits gamma and tau [Yersinia pestis KIM 10] gi|45440656|ref|NP_992195.1| DNA polymerase III subunits gamma and tau [Yersinia pestis biovar Microtus str. 91001] gi|51595342|ref|YP_069533.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis IP 32953] gi|108808607|ref|YP_652523.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Antiqua] gi|108811131|ref|YP_646898.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Nepal516] gi|145600018|ref|YP_001164094.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Pestoides F] gi|149365029|ref|ZP_01887064.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CA88-4125] gi|162421503|ref|YP_001607270.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Angola] gi|165927644|ref|ZP_02223476.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. F1991016] gi|165935942|ref|ZP_02224512.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. IP275] gi|166011016|ref|ZP_02231914.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. E1979001] gi|166213081|ref|ZP_02239116.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. B42003004] gi|167399280|ref|ZP_02304804.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422767|ref|ZP_02314520.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423551|ref|ZP_02315304.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186894361|ref|YP_001871473.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis PB1/+] gi|218930155|ref|YP_002348030.1| DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] gi|229838721|ref|ZP_04458880.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899289|ref|ZP_04514432.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229901363|ref|ZP_04516485.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis Nepal516] gi|270489548|ref|ZP_06206622.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27] gi|294504861|ref|YP_003568923.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003] gi|21957809|gb|AAM84641.1|AE013709_10 DNA polymerase III, tau and gamma subunits [Yersinia pestis KIM 10] gi|45435514|gb|AAS61072.1| DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) [Yersinia pestis biovar Microtus str. 91001] gi|51588624|emb|CAH20232.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Yersinia pseudotuberculosis IP 32953] gi|108774779|gb|ABG17298.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Nepal516] gi|108780520|gb|ABG14578.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Antiqua] gi|115348766|emb|CAL21718.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CO92] gi|145211714|gb|ABP41121.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Pestoides F] gi|149291442|gb|EDM41516.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CA88-4125] gi|162354318|gb|ABX88266.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis Angola] gi|165916087|gb|EDR34694.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. IP275] gi|165920398|gb|EDR37675.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. F1991016] gi|165990016|gb|EDR42317.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. E1979001] gi|166205868|gb|EDR50348.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. B42003004] gi|166958358|gb|EDR55379.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051784|gb|EDR63192.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057721|gb|EDR67467.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186697387|gb|ACC88016.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis PB1/+] gi|229681292|gb|EEO77386.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis Nepal516] gi|229687691|gb|EEO79764.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229695087|gb|EEO85134.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362925|gb|ACY59646.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D106004] gi|262366846|gb|ACY63403.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D182038] gi|270338052|gb|EFA48829.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27] gi|294355320|gb|ADE65661.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003] gi|320016308|gb|ADV99879.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 658 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 170 CLQFHLKALDVEQIRAQLEKV 190 >gi|170025415|ref|YP_001721920.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis YPIII] gi|169751949|gb|ACA69467.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis YPIII] Length = 658 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 170 CLQFHLKALDVEQIRAQLEKV 190 >gi|329946276|ref|ZP_08293870.1| DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328527568|gb|EGF54563.1| DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 427 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 18/150 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-SHALHD 91 M HA L G G G++ +A LQ PV C C P MA SH D Sbjct: 71 MTHAWLVTGPPGSGRSNAARAFA-AALQ----CTGPVPGCGQ--CKPCRDVMAGSH--PD 121 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L+ + +IT+DE++ + TG WRVI+++ D M N LL Sbjct: 122 VVRLTTE--------KLIITMDEVKTLIGEAQRRPWTGRWRVILVEDADRMAERTTNVLL 173 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC 181 KS+EEPP + +++L + ++ +L TIRSRC Sbjct: 174 KSIEEPPPQTVWLLCTPSADDVLPTIRSRC 203 >gi|319776114|ref|YP_004138602.1| DNA polymerase III/DNA elongation factor III, tau and subunit gammas [Haemophilus influenzae F3047] gi|329123278|ref|ZP_08251846.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC 11116] gi|317450705|emb|CBY86925.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae F3047] gi|327471487|gb|EGF16935.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC 11116] Length = 688 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|212693720|ref|ZP_03301848.1| hypothetical protein BACDOR_03241 [Bacteroides dorei DSM 17855] gi|237709244|ref|ZP_04539725.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724471|ref|ZP_04554952.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265754921|ref|ZP_06089835.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212663609|gb|EEB24183.1| hypothetical protein BACDOR_03241 [Bacteroides dorei DSM 17855] gi|229437030|gb|EEO47107.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456629|gb|EEO62350.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234532|gb|EEZ20111.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 374 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 32/291 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + G E+ ++ L GR+ HA L G +G GK L YA ++ + +C Sbjct: 6 VIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICP 65 Query: 73 ---------NPDP--CSPFVKQMASH--ALHDFL--YLSYSL-NP--KTGKW-------- 106 +PD P +K+ A DF+ + ++ L NP W Sbjct: 66 TCVKFNKLIHPDLHFVFPVIKKKAGKDTVCDDFIADWRNFVLQNPYFNLNHWLKEMGAEN 125 Query: 107 -RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + I V E I LSL ++ G +++++I + MN +N LLK LEEPP +F+L Sbjct: 126 QQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSNKLLKLLEEPPAMTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +S IL TI+SR + + E + K L Q K D + + G+ +A+ Sbjct: 186 VSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL-QTKYGLQPEDADDIAHRSEGNFLKAL 244 Query: 226 KILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + +H + +I+L+ + Q +++M+Q +D + S ++ +FL Sbjct: 245 ETIHLSEENKLFFELFINLMRLSYQR-KIREMKQWSDAVASMGRERQKNFL 294 >gi|257869783|ref|ZP_05649436.1| DNA polymerase III delta prime subunit [Enterococcus gallinarum EG2] gi|257803947|gb|EEV32769.1| DNA polymerase III delta prime subunit [Enterococcus gallinarum EG2] Length = 314 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LFEG+ G GK + A + S P C+ ++A Sbjct: 24 GRIAHAYLFEGDAGTGKHEMSLWLAKRLFCTNVQSDEPCGSCSN------CLRIAQGEHP 77 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D L + P I VD+IR+++ S + ++ ++ + MN +AAN+L Sbjct: 78 DVLMV----EPDG----QTIKVDQIRQLQEEFSKSGFESRLKIFLLSQSEKMNTSAANSL 129 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LK LEEP L IL + + IL TI+SRC I F+ L++ L L++ Sbjct: 130 LKFLEEPVGNFLAILETESVGRILPTIQSRCQIIHFSPLAKEKLQTKLQK 179 >gi|109899204|ref|YP_662459.1| DNA polymerase III, subunits gamma and tau [Pseudoalteromonas atlantica T6c] gi|109701485|gb|ABG41405.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Pseudoalteromonas atlantica T6c] Length = 914 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C+ ++ D L + + K R ++ + R R Sbjct: 65 ELGMGSKPCGKCS------TCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 118 --------GRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL +LS + + L+ Q ++ + AA GS+ A+ + Sbjct: 170 CLQFNLKALSRAQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSL 220 >gi|261209808|ref|ZP_05924110.1| DNA polymerase III delta prime subunit [Vibrio sp. RC341] gi|260841106|gb|EEX67626.1| DNA polymerase III delta prime subunit [Vibrio sp. RC341] Length = 321 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L + +G G L Y L P C+ S + Q H D Sbjct: 23 KLSAATLIQAPEGSGVENL-VDYMARTLMCTSRQNEPCGFCH----SCGLMQAGHHP--D 75 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ K GK ITVD+IR I ++ +R+I+I+P D MN +AANALL Sbjct: 76 FHVIAPE---KVGK---SITVDQIRHINRIAQESSQLSGYRLIVINPADAMNESAANALL 129 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 K+LEEP +FIL++ +L TI SRC + + S + L++ I Sbjct: 130 KTLEEPAADCVFILVTAHVHHLLPTIVSRCQKLMVTAPSTQLVLAWLQEQGITA 183 >gi|160898830|ref|YP_001564412.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364414|gb|ABX36027.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 349 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP F+L S A Sbjct: 115 IRVEAMRDAVEFCQRTSARGRGKAVLVYPAEQMNAITANALLKTLEEPPGDARFVLASEA 174 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI-AAYGSVARAIKIL 228 + +L TIRSRCL+ ++++ + +AL L+ G + V + AA G A+ + Sbjct: 175 AHQLLPTIRSRCLT---HTMAWPDQQEALAWLQGQGVAPEAADVALRAAGGRPGDALALA 231 Query: 229 HYDCDKIISSYIDL 242 H K ++++ L Sbjct: 232 HSGGGKDMAAWSQL 245 >gi|294054461|ref|YP_003548119.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] gi|293613794|gb|ADE53949.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] Length = 376 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HV 58 +I R + P L G + I + L + R+ HA LF G +G GK + +A + Sbjct: 7 VIARRWRPKQFDELVGQDHIVQTLRNAIETNRIAHAYLFVGPRGTGKTSSARLFAKCLNA 66 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P+ + PD S + + S + D + + + N +VD++R + Sbjct: 67 EGGPNIA--------PDNDSEISQSIMSGSCMDVIEIDGASNN---------SVDQVRDL 109 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R +++ +ID V + A NALLK+LEEPP V FI + + +L TI Sbjct: 110 RDDCQYAPTQCSFKIYIIDEVHMLTTAAFNALLKTLEEPPPHVKFIFATTEAHKVLPTIV 169 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC +F +++ + L+ + +++ V+ AA S+AR D I+ Sbjct: 170 SRCQRFEFRPIADEVIVAKLKTIS----EAEGIQVEDAALESIARLANGGMRDSQSILDQ 225 Query: 239 YI 240 I Sbjct: 226 MI 227 >gi|89901038|ref|YP_523509.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118] gi|89345775|gb|ABD69978.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118] Length = 336 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 ++ KT K I VD +R F T+ G + +++ P + MN ANALLK+LEEPP Sbjct: 98 IDAKTRKPSKEIRVDAMRDAVEFSQRTSARGRGKAVLVFPAERMNHVTANALLKTLEEPP 157 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 V F+L S A+ +L TIRSRCL+ +++ L +L L+ G D ++ V + A Sbjct: 158 GDVKFVLASDAAHQLLPTIRSRCLA---HTMVWPALDTSLAWLQQQGLDGRQAAVMLRAC 214 Query: 219 GS 220 G Sbjct: 215 GG 216 >gi|239637470|ref|ZP_04678444.1| DNA polymerase III delta' subunit [Staphylococcus warneri L37603] gi|239596915|gb|EEQ79438.1| DNA polymerase III delta' subunit [Staphylococcus warneri L37603] Length = 308 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 26/170 (15%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGE--QGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 D ++ L+ Y S ++ HA LFEG+ Q + K + F A + +CN D Sbjct: 2 DEQQQLTNAYASNKLSHAYLFEGDDAQSMQKVAINF--------------AKLILCNNDE 47 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 +H DF+Y+S T I ++I ++ + ++ G ++V ++ Sbjct: 48 QCEVKVSTLNHP--DFMYVSSE--------ETTIKKEKIEQLVHHMNQLPIEGNYKVYIV 97 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + + N++LK LEEPPQ + IL+S IL TI SRC + F Sbjct: 98 EDFEKLTVQGENSILKFLEEPPQNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|229845044|ref|ZP_04465180.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 6P18H1] gi|229812016|gb|EEP47709.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 6P18H1] Length = 688 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|329896154|ref|ZP_08271367.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC3088] gi|328921973|gb|EGG29338.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC3088] Length = 619 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + K L R+HHA LF G +G+GK T+ A Sbjct: 5 VLARKYRPQIFREMVGQEHVLKALINALDHDRLHHAYLFTGTRGVGKTTVARVLAKCFNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P +C+ +++A D + + + K V++ R + Sbjct: 65 DQGVSSEPCGVCS------ACQEIAEGRSVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ ++ NALLK+LEEPP+ F+L + + +TI SR Sbjct: 110 NVQYAPSRSRYKIYLIDEVHMLSSHSFNALLKTLEEPPEHAKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNL 194 CL +LS + + Sbjct: 170 CLQFHLKNLSPDRI 183 >gi|312126881|ref|YP_003991755.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor hydrothermalis 108] gi|311776900|gb|ADQ06386.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor hydrothermalis 108] Length = 534 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + + I K L ++ HA +F G +G GK T Sbjct: 7 RKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 57 MSRA-VNCLNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNT---------SVNDVRQI 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI Sbjct: 107 RDEVRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 167 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 221 >gi|153949412|ref|YP_001402019.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis IP 31758] gi|152960907|gb|ABS48368.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis IP 31758] Length = 658 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 170 CLQFHLKALDVEQIRAQLEKV 190 >gi|260172021|ref|ZP_05758433.1| putative DNA polymerase III, delta subunit [Bacteroides sp. D2] gi|315920332|ref|ZP_07916572.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694207|gb|EFS31042.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 374 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 136/294 (46%), Gaps = 38/294 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVNEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGEEDACGVCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGK- 105 L +PD F + C ++ +++ + L++ L + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRPFVINNPYFNLNHWLGEMDAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 SQALIYAKESDEILKKLSLKSSEGGFKITIVWLPEKMHPVCANKLLKLLEEPPEKTIFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSVA 222 +S A IL TI SR + + E ++ + L+ + + DS + IA A G+ Sbjct: 186 VSEAPDMILPTILSRTQRMNVRKIDEASIDRVLQSKYHVQPADS----ISIAHLANGNFV 241 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + +++L+ + Q +++M+ ++++ S ++ +FL Sbjct: 242 KALETIHLNEENQLFFELFVNLMRLSYQR-KIKEMKMWSEQVASMGRERQKNFL 294 >gi|312138020|ref|YP_004005356.1| DNA polymerase iii delta' subunit [Rhodococcus equi 103S] gi|311887359|emb|CBH46670.1| DNA polymerase III delta' subunit [Rhodococcus equi 103S] Length = 395 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 18/198 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 RM H+ LF G G G++ +A + D V C C MA Sbjct: 33 RMTHSWLFTGPPGSGRSVAAVCFAAALQCTSDG----VPGCGE--CQACTTTMAGTHGDV 86 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L+ I+V E+R I S +TG W+V++++ D + AANALL Sbjct: 87 RRVVPEGLS---------ISVSEMRGIVQTASRRPSTGRWQVVVVEDADRLTEGAANALL 137 Query: 152 KSLEEPPQKVLFILISHA-SPTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEPP++ +F+L + + P +S T+RSRC I + S + + + L + + ++ Sbjct: 138 KVVEEPPERTVFLLCAPSVDPQDISVTLRSRCRHIPLVTPSVDAIAQVLRERDHLDAETS 197 Query: 210 RDFVKIAAYGSVARAIKI 227 D+ G V RA ++ Sbjct: 198 -DWAASICGGHVGRARRL 214 >gi|301385366|ref|ZP_07233784.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato Max13] Length = 740 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|288802980|ref|ZP_06408416.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] gi|288334497|gb|EFC72936.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] Length = 379 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 33/247 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G E +++ L Q R+ HALLF G QG GK L +A ++L Sbjct: 6 VIGQEAVKERLIQMVKKDRLPHALLFCGPQGAGKMALAMAFASYLLAGDETEEATSSTVS 65 Query: 60 ---------QNPD--FS----KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKT 103 ++PD FS K P P S F K+ + + + Sbjct: 66 NARAMLRNWEHPDLHFSYPTIKLPSMSGEHQPVSADFAKEWHGLIMQGTYFTMNQWMNQM 125 Query: 104 G--KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 G + +IT E + L+L ++ G ++V +I + MN +AN LLK LEEPPQ Sbjct: 126 GATTQQAIITGAESDELSRVLALKSSQGGYKVSIIWLPERMNLTSANKLLKLLEEPPQGT 185 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +F+++ +L TI SR I +++ + +AL + + D+ +IA GS Sbjct: 186 IFLMVCEEPEKLLETIISRTQRIDVKRINDEAIEQALINKRGIDTDAAHRIARIAN-GSW 244 Query: 222 ARAIKIL 228 +A++ + Sbjct: 245 LKALEAM 251 >gi|284034966|ref|YP_003384896.1| DNA polymerase III subunits gamma and tau [Spirosoma linguale DSM 74] gi|283814259|gb|ADB36097.1| DNA polymerase III, subunits gamma and tau [Spirosoma linguale DSM 74] Length = 664 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 26/253 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G E I L + + A LF G +G+GK T A + QN Sbjct: 9 RKYRPATFDTVVGQEHITTTLKNAIKTNHLASAFLFCGPRGVGKTTCARILAKTINCQNL 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 C + C F Q AS +H+ S + +V++IR + + Sbjct: 69 TAEGEACDAC--ESCVSF-NQNASFNIHELDAASNN------------SVEDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +G +++ +ID V ++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RYPPQSGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDK 234 FN + N+L ++ I D + A G + A+ + + + D+ Sbjct: 174 IFDFNRIQPQHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAADR 233 Query: 235 II--SSYIDLIHI 245 II +D +HI Sbjct: 234 IIRYKEVLDNLHI 246 >gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] gi|151279933|gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] Length = 673 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 22/207 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P L G E + + L+ + R+HHA LF G +G+GK TL F Sbjct: 5 VLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAKSFNC 64 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 G PD + PC +A A Y+ G VDE Sbjct: 65 VG-----PDGNGG----ITSTPCGVCEACVAIDAGRFVDYIEMDAASNRG-------VDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + ++ + ++V MID V + +A N++LK+LEEPP+ V FIL + I Sbjct: 109 MAQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL + ++ L+ + Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVSHLDNI 195 >gi|300312975|ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae SmR1] gi|300075760|gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + AP +C + C + + D++ + + N VDE+ Sbjct: 65 VGPDGAGGITAAPCGVC--EACV----AIDAGRFVDYIEMDAASN---------RGVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + ++V MID V + +A NA+LK+LEEPP+ + FIL + I Sbjct: 110 AQLLEQAIYAPSNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL + ++ L+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIIGHLDNI 195 >gi|270266974|gb|ACZ65312.1| DNA polymerase III subunits gamma and tau [Pectobacterium atrosepticum] Length = 177 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 15/176 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + L+ GR+HHA LF G +G+GK ++ A + + P C Sbjct: 14 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCEQGVTATPCGQC- 72 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C +++ D + + + K V++ R + + G ++V Sbjct: 73 -DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKV 118 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +ID V ++R++ NALLK+LEEPP V F+L + + TI SRCL +L Sbjct: 119 YLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKAL 174 >gi|226304003|ref|YP_002763961.1| DNA polymerase III delta' subunit [Rhodococcus erythropolis PR4] gi|226183118|dbj|BAH31222.1| putative DNA polymerase III delta' subunit [Rhodococcus erythropolis PR4] Length = 409 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 43/233 (18%) Query: 13 RLFGHEDIEKFLSQYYCSGR-------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 RL G D+E+ L S R M HA LF G G G++ +A LQ Sbjct: 13 RLVGQHDVEQSLRDAALSARGDSSGSEMTHAWLFTGPPGSGRSVAALCFAA-ALQ----- 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI------TVDEIRRIR 119 C D +P + HA + ++ G R +I +V +R I Sbjct: 67 ------CTSDG-APGCGEC--HAC------TTTMGGTHGDVRRIIPDGLSISVKGMREIV 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS-PTILS-TI 177 S TG W+VI+++ D + AANALLK +EEPP + + +L + + P +S T+ Sbjct: 112 NIASRRPTTGRWQVIVVEDADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTL 171 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 RSRC + + S ++ + L + G D +R +IAA G V RA ++ Sbjct: 172 RSRCRHMPLVTPSVESIAQVL--IDRDGLDPER--ARIAASISGGHVGRARRL 220 >gi|223935118|ref|ZP_03627036.1| DNA-directed DNA polymerase [bacterium Ellin514] gi|223896002|gb|EEF62445.1| DNA-directed DNA polymerase [bacterium Ellin514] Length = 344 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 24/193 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP----CSPFV--KQM 84 GR+ H LF G +G+ R L + PVR+ P C V +++ Sbjct: 23 GRLAHGYLFSG-HSLGELEALARTLAKTLN----CQEPVRLVPGGPAVDCCDKCVNCRKI 77 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 + D ++ P++ V+T+D++R + ++L N ++V +I D +N Sbjct: 78 DAENHADVHWV----RPESKS--RVVTIDQMRDLMQEINLKPNEAEYKVAVIVAADRLNV 131 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 AANA LK+LEEPP K + +L++ IL TI SRCL + F E N A Q++ + Sbjct: 132 QAANAFLKTLEEPPAKSILVLLTTEPQKILETILSRCLRLNFA--GEGNKALAAAQMEWL 189 Query: 205 GWDSKRDFVKIAA 217 R F ++AA Sbjct: 190 -----RAFSELAA 197 >gi|150004383|ref|YP_001299127.1| putative DNA polymerase III, delta subunit [Bacteroides vulgatus ATCC 8482] gi|254883344|ref|ZP_05256054.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294776813|ref|ZP_06742276.1| putative DNA polymerase III, delta' subunit [Bacteroides vulgatus PC510] gi|319643357|ref|ZP_07997983.1| DNA polymerase III [Bacteroides sp. 3_1_40A] gi|149932807|gb|ABR39505.1| putative DNA polymerase III, delta subunit [Bacteroides vulgatus ATCC 8482] gi|254836137|gb|EET16446.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294449289|gb|EFG17826.1| putative DNA polymerase III, delta' subunit [Bacteroides vulgatus PC510] gi|317384986|gb|EFV65939.1| DNA polymerase III [Bacteroides sp. 3_1_40A] Length = 374 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 32/291 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + G E+ ++ L GR+ HA L G +G GK L YA ++ + +C Sbjct: 6 VIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICP 65 Query: 73 ---------NPDP--CSPFVKQMASH--ALHDFL--YLSYSL-NP--KTGKW-------- 106 +PD P +K+ A DF+ + ++ L NP W Sbjct: 66 TCVKFNKLIHPDLHFVFPVIKKKAGKDTVCDDFIADWRNFVLQNPYFNLNHWLKEMGAEN 125 Query: 107 -RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + I V E I LSL ++ G +++++I + MN +N LLK LEEPP +F+L Sbjct: 126 QQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSNKLLKLLEEPPAMTVFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +S IL TI+SR + + E + K L Q K D + + G+ +A+ Sbjct: 186 VSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL-QTKYGLQPEDADDIAHRSEGNFLKAL 244 Query: 226 KILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + +H + +I+L+ + Q +++M+Q +D + S ++ +FL Sbjct: 245 ETIHLSEENKLFFELFINLMRLSYQR-KIREMRQWSDAVASMGRERQKNFL 294 >gi|283850684|ref|ZP_06367971.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. FW1012B] gi|283573927|gb|EFC21900.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. FW1012B] Length = 580 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 49/292 (16%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G E +++ LS+ ++ A LF G +G+GK TL A + + P +C+ Sbjct: 20 GQEAVKRILSRAAAEDKIAPAYLFSGTRGVGKTTLARVLAKALNCETAPTAEPCNVCS-- 77 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 +Q+ + D + + + + K VD+ RR++ + ++V + Sbjct: 78 ----QCRQITAGVSPDVIEIDAATHGK---------VDDARRLKEDVGYAPLNSRYKVFI 124 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL- 194 ID + A NALLK+LEEPP +V FIL + +TI SRC F L++ L Sbjct: 125 IDEAHMLTMQAFNALLKTLEEPPARVTFILATTEPHKFPATIISRCQHFLFKRLAQPELE 184 Query: 195 ---------------YKALEQLKIMGWDSKRD----FVKIAAYGSV----ARAIKILHYD 231 KA+ + G S RD ++ A G A A +L Sbjct: 185 AHLGGLLDREAVPFESKAVSLIARRGAGSVRDSMSLLAQVLALGGAALTEADARSVLGLA 244 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + I+ IH ++ ++Q+ D+ L I F L+E+ Sbjct: 245 GQDVFFGLIEAIHAMDGPAVVELLRQVLDKGLD----------IGFFLRELA 286 >gi|253571388|ref|ZP_04848795.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839341|gb|EES67425.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 374 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 45/254 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVSEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGVCP 65 Query: 59 -------LQNPDF---------SKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLN 100 L +PD SK +C+ PFV + L+ +L + N Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSSKGKREVCDDYIADWRPFVLKNPYFNLNHWLREMDAEN 125 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K Sbjct: 126 AQA-----IIYAKESDEILKKLSLKSSEGGFKITILWLPEKMHPVCANKLLKLLEEPPEK 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--A 217 +F+L+S A IL TI SR + + E + + L+ + I DS + IA A Sbjct: 181 TIFLLVSEAPEMILPTILSRTQRMNVRKIDEPAIDRVLQSKYGIQPADS----LSIAHLA 236 Query: 218 YGSVARAIKILHYD 231 G+ +A++ +H + Sbjct: 237 NGNFIKALETIHLN 250 >gi|28870802|ref|NP_793421.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] gi|28854051|gb|AAO57116.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] Length = 743 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|315168761|gb|EFU12778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1341] Length = 586 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + +K M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMKEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|221198165|ref|ZP_03571211.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD2M] gi|221208344|ref|ZP_03581347.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD2] gi|221171757|gb|EEE04201.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD2] gi|221182097|gb|EEE14498.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD2M] Length = 342 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLARGFLCESPQPNGEPCGTCAACTWFAQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTG-KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + +G K RT I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADDSGKKTRTPSKEIKIEQVRALLDFCGVGSHRGGLRVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPPGVVFLLVSARIDRLLPTIVSRC 183 >gi|192362329|ref|YP_001982902.1| DNA polymerase III subunits gamma and tau [Cellvibrio japonicus Ueda107] gi|190688494|gb|ACE86172.1| DNA polymerase III, gamma and tau subunits [Cellvibrio japonicus Ueda107] Length = 680 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 23/248 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRVFREMVGQEHVLQALINALDHNRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V++ R + Sbjct: 65 ETGVSSEPCGQCA------ACREIAEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPMTILSR 169 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +++ + + LEQ + +S + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKNMNPERIVQHLKFVLEQELVPYEESALWHLGRAADGSMRDAMSLTDQAIAYGS 229 Query: 233 DKIISSYI 240 KI S + Sbjct: 230 GKITESEV 237 >gi|207743118|ref|YP_002259510.1| dna polymerase III (delta' subunit) protein [Ralstonia solanacearum IPO1609] gi|206594515|emb|CAQ61442.1| dna polymerase III (delta' subunit) protein [Ralstonia solanacearum IPO1609] Length = 320 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 3 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPAADGQPCQTCAA--CNWFAQGNHPDFH 60 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ + K +I ++++R++ + + + RV+++ P+D + Sbjct: 61 LVRPEAMEEAPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLDAL 120 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 121 QTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRC 159 >gi|160885662|ref|ZP_02066665.1| hypothetical protein BACOVA_03665 [Bacteroides ovatus ATCC 8483] gi|299147521|ref|ZP_07040586.1| putative DNA polymerase III, delta prime subunit [Bacteroides sp. 3_1_23] gi|156109284|gb|EDO11029.1| hypothetical protein BACOVA_03665 [Bacteroides ovatus ATCC 8483] gi|298514799|gb|EFI38683.1| putative DNA polymerase III, delta prime subunit [Bacteroides sp. 3_1_23] Length = 374 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 136/294 (46%), Gaps = 38/294 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVNEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGEEDACGVCP 65 Query: 59 -------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGK- 105 L +PD F + C ++ +++ + L++ L + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSAKGKKEVCDDYIADWRPFVINNPYFNLNHWLGEMDAEN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + +I E I LSL ++ G +++ ++ + M+ AN LLK LEEPP+K +F+L Sbjct: 126 SQALIYAKESDEILKKLSLKSSEGGFKITIVWLPEKMHPVCANKLLKLLEEPPEKTIFLL 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSVA 222 +S A IL TI SR + + E ++ + L+ + + DS + IA A G+ Sbjct: 186 VSEAPDMILPTILSRTQRMNVRKIDEASIDRVLQSKYHVQPADS----ISIAHLANGNFV 241 Query: 223 RAIKILHYDCDK--IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +A++ +H + + +++L+ + Q +++M+ ++++ S ++ +FL Sbjct: 242 KALETIHLNEENQLFFELFVNLMRLSYQR-KIKEMKMWSEQVASMGRERQKNFL 294 >gi|302063638|ref|ZP_07255179.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato K40] gi|302133891|ref|ZP_07259881.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 740 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|213968912|ref|ZP_03397052.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] gi|213926211|gb|EEB59766.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] Length = 744 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|66045069|ref|YP_234910.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae B728a] gi|63255776|gb|AAY36872.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae B728a] Length = 736 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 8 RKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K++ D + + + K V++ R + + Sbjct: 68 ITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL Sbjct: 113 YAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 +++ + + L Sbjct: 173 FSLKNMTPERVVEHL 187 >gi|119476225|ref|ZP_01616576.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2143] gi|119450089|gb|EAW31324.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2143] Length = 588 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 35/226 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + K L R+HHA LF G +G+GK ++ A + + S P C Sbjct: 1 MVGQEHVLKALINALDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEPCGQC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--------EIRRIRYFLSLT 125 S L+ G++ +I VD + R + + Sbjct: 60 ----------------------SACLSISEGRFVDLIEVDAASRTKVEDTRELLENVQYA 97 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G ++V +ID V ++ N+ NALLK+LEEPP V F+L + + +TI SRCL Sbjct: 98 PTAGRFKVYLIDEVHMLSTNSFNALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFN 157 Query: 186 FNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 ++S +L LEQ I + + +A GS+ A+ + Sbjct: 158 LKNMSPERIVVHLQNVLEQEMITYEEPALWLLGRSADGSMRDALSL 203 >gi|28377566|ref|NP_784458.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum WCFS1] gi|28270398|emb|CAD63301.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum WCFS1] Length = 565 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 7 RVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHHL 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C+ K L+D + + + N V+EIR IR Sbjct: 67 VDGEPCNEC--ETCTAITKGQ----LNDVIEIDAASNNG---------VEEIRDIRDKAK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 112 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQR 171 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + Y + + K + +D K + AA G + A+ IL D++IS Sbjct: 172 FDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSIL----DQVIS 225 >gi|83748623|ref|ZP_00945642.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551] gi|83724747|gb|EAP71906.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551] Length = 336 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------ 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 19 AKLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPAADGQPCQTCAA--CNWFAQGNHPDFH 76 Query: 84 -MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + A+ + K +I ++++R++ + + + RV+++ P+D + Sbjct: 77 LVRPEAMEEAPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLDAL 136 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ANALLK+LEEPPQ +F+L++ IL TI SRC + LE+ Sbjct: 137 QTEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRCRQFPLQPPPPEAARQWLER 194 >gi|319938988|ref|ZP_08013352.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus 1_2_62CV] gi|319812038|gb|EFW08304.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus 1_2_62CV] Length = 554 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ + +E L+ D + + V+I A G + A+ IL Sbjct: 179 TKDIVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSIL 220 >gi|315644459|ref|ZP_07897592.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex V453] gi|315280209|gb|EFU43502.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex V453] Length = 573 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 8 RAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P C + C +++ S A+ D + + N V+EIR +R + Sbjct: 68 PAEEPCNEC--EAC----RRITSGAVMDVQEIDAASNR---------GVEEIRDLREKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 YAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQL 201 F +S + L+Q+ Sbjct: 173 FDFRRVSLDEQTGRLQQI 190 >gi|229591983|ref|YP_002874102.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens SBW25] gi|229363849|emb|CAY51308.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens SBW25] Length = 688 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +++ + + L + Sbjct: 170 CLQFSLKNMTPERVVEHLSHV 190 >gi|119945937|ref|YP_943617.1| DNA polymerase III, subunits gamma and tau [Psychromonas ingrahamii 37] gi|119864541|gb|ABM04018.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Psychromonas ingrahamii 37] Length = 774 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLHHAYLFSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D L + + K VD+ R + Sbjct: 65 EKGVTATPCGAC------VHCQAIDQGRFVDLLEIDAASRTK---------VDDTREMLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPAQGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSL 189 CL ++ Sbjct: 170 CLQFHLKAI 178 >gi|52424926|ref|YP_088063.1| DNA polymerase III subunits gamma and tau [Mannheimia succiniciproducens MBEL55E] gi|52306978|gb|AAU37478.1| DnaX protein [Mannheimia succiniciproducens MBEL55E] Length = 693 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFAEVVGQEHILAALSNGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 MDGVTAEPCGKC------AHCKAIEEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C+ +L + + L+ + Sbjct: 170 CMQFNLKALDQKQISHHLQHI 190 >gi|254555739|ref|YP_003062156.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum JDM1] gi|254044666|gb|ACT61459.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum JDM1] Length = 565 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 7 RVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHHL 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C+ K L+D + + + N V+EIR IR Sbjct: 67 VDGEPCNEC--ETCTAITKGQ----LNDVIEIDAASNNG---------VEEIRDIRDKAK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 112 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQR 171 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + Y + + K + +D K + AA G + A+ IL D++IS Sbjct: 172 FDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSIL----DQVIS 225 >gi|150025047|ref|YP_001295873.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149771588|emb|CAL43059.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 361 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 27/187 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T R + P Sbjct: 9 RKYRPQTFKDVVGQQAITNTLLNAIETNHLASALLFTGPRGVGKTTCA-RILARKINQPG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + DP DF + + L+ + +VD+IR + + Sbjct: 68 YD---------DPN------------EDFAFNVFELDAASNN-----SVDDIRNLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQTGQYKVYIIDEVHMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS 190 F ++ Sbjct: 162 FDFKRIT 168 >gi|315221642|ref|ZP_07863561.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus F0211] gi|315189293|gb|EFU22989.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus F0211] Length = 554 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + L Q ++ HA LF G +G GK ++ +A + P+ Sbjct: 16 QLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QK 67 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ + + +L D + + + N VDEIR IR + + Sbjct: 68 DGEPCNDCYICQAITEGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSLAK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR +F S+ Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVKIA---AYGSVARAIKIL 228 ++ + +E L+ D + + V+I A G + A+ IL Sbjct: 179 TKDIVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSIL 220 >gi|210630427|ref|ZP_03296449.1| hypothetical protein COLSTE_00333 [Collinsella stercoris DSM 13279] gi|210160479|gb|EEA91450.1| hypothetical protein COLSTE_00333 [Collinsella stercoris DSM 13279] Length = 372 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 43/237 (18%) Query: 71 MCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 + NP C+ +++A D YL+ P++ T + + R + ++L+ Sbjct: 54 VANPGACAACDDCRRVARRTHPDVHYLA----PESA---TGYLIAQTRDLLEDVALSPIR 106 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +V +ID + + N ANALLK+LEEPP V FIL+ ++ +L TI SRC + F Sbjct: 107 ARCKVYIIDRAEQLRANTANALLKTLEEPPANVTFILLGTSTDVMLPTIVSRCQCVPFRP 166 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-------------------- 228 LS A+E G + R + +A GS ARA++ L Sbjct: 167 LSLEESTVAVEH--ATGQPAARCRMAVAVAGSPARAVEFLKSADRVAARRAMVRAVDALA 224 Query: 229 HYDCDKIISSYIDL---IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 D I++S DL IH P E ++ QQ +L Q+Q D+L LK++ Sbjct: 225 RADEADILASAKDLMGAIHAPLAE--VKSTQQA---ILEQNQ----DYLSRGALKQL 272 >gi|303229559|ref|ZP_07316347.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|302515684|gb|EFL57638.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 346 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 21/209 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFS 65 Y + G + I+ L++ + H+LLF GE G+GK + A +L P + Sbjct: 2 TYFDNVIGQDTIKNHLTELVKRQTLPHSLLFYGEAGLGKLDMAIGLASLILGRQVFPGHN 61 Query: 66 KAP-------VRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDEIR 116 A R+ N + K++ + L ++ ++ + P ++ + V++ Sbjct: 62 GAEYLEAVKNARLANGES----EKKIEAEGLPIYMDKGDAFWIRPM----KSTLKVEQWY 113 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + A G RV++I+ N ANA+LK++EEPP +V FI+I++ +L T Sbjct: 114 SLLQDHLSVAGLGN-RVVIIEDFHMANAIMANAMLKTIEEPPAQVYFIIITNKINLVLPT 172 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMG 205 I SRC+ + F S+S+ ++ AL+Q I G Sbjct: 173 IISRCMGVGFQSVSDESIRYALQQRGITG 201 >gi|167772016|ref|ZP_02444069.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM 17241] gi|167665814|gb|EDS09944.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM 17241] Length = 536 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 25/191 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L +G+ HA LF G +G GK T ++ Sbjct: 7 RKWRPKTFDDVVGQEHITATLKNEVAAGKFSHAYLFTGSRGTGKTT-----CSKIVAKAV 61 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-- 119 + PV + +PC+ + + ++ D + + + N VD IR++R Sbjct: 62 NCERPV---DGNPCNECAACRGIDDGSVLDVVEIDAASNNG---------VDNIRQLREE 109 Query: 120 -YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 YFL +RV ++D +++ A NALLK LEEPP+ V+FIL + +L TI Sbjct: 110 AYFLPSVVK---YRVYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTIL 166 Query: 179 SRCLSIKFNSL 189 SRC F+ + Sbjct: 167 SRCQRFDFHRI 177 >gi|308179718|ref|YP_003923846.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045209|gb|ADN97752.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ST-III] Length = 565 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 7 RVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHHL 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C+ K L+D + + + N V+EIR IR Sbjct: 67 VDGEPCNEC--ETCTAITKGQ----LNDVIEIDAASNNG---------VEEIRDIRDKAK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 112 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQR 171 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + Y + + K + +D K + AA G + A+ IL D++IS Sbjct: 172 FDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSIL----DQVIS 225 >gi|303231906|ref|ZP_07318615.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513435|gb|EFL55468.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] Length = 346 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 21/209 (10%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFS 65 Y + G + I+ L++ + H+LLF GE G+GK + A +L P + Sbjct: 2 TYFDNVIGQDTIKNHLTELVKRQTLPHSLLFYGEAGLGKLDMAIGLASLILGRQVFPGHN 61 Query: 66 KAP-------VRMCNPDPCSPFVKQMASHALHDFLYL--SYSLNPKTGKWRTVITVDEIR 116 A R+ N + K++ + L ++ ++ + P ++ + V++ Sbjct: 62 GAEYLDEVKNARLANGES----EKKIEAEGLPIYMDKGDAFWIRPM----KSTLKVEQWY 113 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + A G RV++I+ N ANA+LK++EEPP +V FI+I++ +L T Sbjct: 114 SLLQDHLSVAGLGN-RVVIIEDFHMANAIMANAMLKTIEEPPAQVYFIIITNKINLVLPT 172 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMG 205 I SRC+ + F S+S+ ++ AL+Q I G Sbjct: 173 IISRCMGVGFQSVSDESIRYALQQRGITG 201 >gi|119511529|ref|ZP_01630638.1| DNA polymerase III subunit delta [Nodularia spumigena CCY9414] gi|119463840|gb|EAW44768.1| DNA polymerase III subunit delta [Nodularia spumigena CCY9414] Length = 317 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 120/276 (43%), Gaps = 28/276 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-----QNPDFSKAP 68 L G + L+Q R+ A LF G G+GK TL R +L +N ++ Sbjct: 9 LLGQSQAIELLTQAVKQNRVAPAYLFVGIDGVGK-TLAARCFVELLFSAQTRNIASLQSR 67 Query: 69 VRMCN-PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 +R N PD +V+ H + K VI +++IR I FL Sbjct: 68 LRQGNHPDLW--WVQPTYQHEGKRLTAAEAAEKKLKRKAPPVIRLEQIREITEFLGRPPL 125 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 V++++ M +AANALLK+LEEP Q + ILI+ + ++L T+ SRC I F Sbjct: 126 EAPRNVVVLESAQTMAESAANALLKTLEEPGQATV-ILIAPSPESVLPTLVSRCQRIPFY 184 Query: 188 SLSENNLYKALEQL---------KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 L +L + L Q ++ + IA+Y + + L D K+ SS Sbjct: 185 RLDTQSLTQVLTQAGHEEILQHPAVLSIAAGSPGSAIASYEQLQIIPETLLQDVTKVPSS 244 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 Y RQ AL+ + IA EL ++ Q D+L Sbjct: 245 Y-------RQ--ALELAKTIAQELDTEAQLWLVDYL 271 >gi|254499173|ref|ZP_05111854.1| DNA polymerase III, delta prime subunit [Legionella drancourtii LLAP12] gi|254351607|gb|EET10461.1| DNA polymerase III, delta prime subunit [Legionella drancourtii LLAP12] Length = 297 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR ++ + LT R+I+I+ D MN +ANALLK LEEP + LF+L++ Sbjct: 84 IKIDQIRELQNYSYLTPQRAVHRLIIIESADRMNTASANALLKILEEPAEHTLFLLMAQQ 143 Query: 170 SPTILSTIRSRCLSIKFNS---LSENNLYKALEQ 200 T+L T+ SRC I+F+S L NL EQ Sbjct: 144 LSTVLPTVLSRCQVIRFSSQTNLVATNLLTLGEQ 177 >gi|238754273|ref|ZP_04615630.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473] gi|238707520|gb|EEP99880.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473] Length = 648 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 42/250 (16%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFAEVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITATPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 + TI SRCL +L + LE++ ++ S ARA+++L Sbjct: 162 LPVTILSRCLQFHLKALDVEQIRTQLEKV-----------LQAEQIDSDARALQLLARAA 210 Query: 233 DKIISSYIDL 242 D + + L Sbjct: 211 DGSMRDALSL 220 >gi|119486990|ref|ZP_01620862.1| DNA polymerase III subunit delta [Lyngbya sp. PCC 8106] gi|119455919|gb|EAW37053.1| DNA polymerase III subunit delta [Lyngbya sp. PCC 8106] Length = 324 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 20/209 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG-------FRY 54 +D +F P+ Q H+ IE L+Q R+ A LF G GIG+ F + Sbjct: 3 LDDSFSPLIGQ----HQAIE-LLTQTVLQNRIAPAYLFVGSSGIGRGLAARCFIEFLFCH 57 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG---KWRTVIT 111 NP + ++ N P + + LH S S + G + R I Sbjct: 58 GSQKSLNPQQVRHRIQARN----HPDLLWVEPTYLHQGKRFSVSEAEEAGLKRRSRPQIR 113 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +++IR I FLS +++++ + M AAN LLK+LEEP K ILI+ Sbjct: 114 LEQIREIGQFLSRPPLEASRLIVVLEQAETMAEAAANGLLKTLEEP-GKATLILIAPGVD 172 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++LST+ SRC I F L E + + L++ Sbjct: 173 SLLSTLVSRCAKIPFYRLDEQAVAQVLKE 201 >gi|113867581|ref|YP_726070.1| DNA polymerase III subunit delta' [Ralstonia eutropha H16] gi|113526357|emb|CAJ92702.1| DNA polymerase III delta prime subunit [Ralstonia eutropha H16] Length = 335 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 18/162 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HALL G+QGIGK L +A G + + P P C C F + +H Sbjct: 19 RLPHALLIHGQQGIGKRDLALHFAQGLLCEAPLPDGQPCGQCAA--CHWFSQ--GNHP-- 72 Query: 91 DFLYL--------SYSLNPKTGKWRT---VITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 DF + + + + GK + +I ++++R + + + + RV+++ P+ Sbjct: 73 DFTVVRPEALDAAAEAETDEGGKKKAPSKIIRMEQVRALIEAVGVGTHRAGLRVVVVYPL 132 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 D + ANALLK+LEEPP +F+L++ IL TI SRC Sbjct: 133 DALQTEGANALLKTLEEPPPSTVFLLVTDRLDRILPTILSRC 174 >gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1] gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1] Length = 599 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 30/271 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L GR+ HA LF G +G+GK T+ A V ++ P +C Sbjct: 18 LIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCTAPPAERPCGVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + HA+ D + + + + +V++ R I + +V Sbjct: 77 -ESCRAIAE---GHAV-DVIEMDAASH---------TSVEDAREIIERVQFRPAVARTKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC FN + + Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTVAS 182 Query: 194 LYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIP 246 + L Q + + + AA GS+ A+ +L D++++ I L + Sbjct: 183 IAAHLRSIAAQEGVTLEAGVAEAIARAATGSMRDALSVL----DQLMAYGGGTISLEQV- 237 Query: 247 RQEYALQKMQQI---ADELLSQDQKIAFDFL 274 R +MQ++ AD L++ D A + Sbjct: 238 RNLLGAGEMQEVTALADALIAGDLPGALQVI 268 >gi|264677766|ref|YP_003277672.1| DNA polymerase III subunits gamma and tau [Comamonas testosteroni CNB-2] gi|262208278|gb|ACY32376.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni CNB-2] Length = 719 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 22/204 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ R L Sbjct: 5 VLARKYRPRTFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVS-RILAKSLN 63 Query: 61 ------NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 N + P +C C+ ++ S D+ L + N VDE Sbjct: 64 CQGLDGNGGITATPCGVCAA--CT----EIDSGRFPDYTELDAASN---------RGVDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 ++ + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 109 VQSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKAL 198 T+ SRCL ++ + + L Sbjct: 169 VTVLSRCLQFNLRPMAPETVLEHL 192 >gi|167470065|ref|ZP_02334769.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis FV-1] Length = 583 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + LE++ Sbjct: 170 CLQFHLKALDVEQIRAQLEKV 190 >gi|114330605|ref|YP_746827.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha C91] gi|114307619|gb|ABI58862.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha C91] Length = 527 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 29/224 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L R+HHA LF G +G+GK T+ A + + P C Sbjct: 19 LVGQEHVVRALVNSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNCEQGVTATPCGKCA 78 Query: 74 PDPC-----SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 C FV D + L + N + VD +R + T Sbjct: 79 A--CLAIDQGNFV---------DLIELDAASNTQ---------VDAMRELLDNAQYAPVT 118 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN- 187 ++V +ID V ++++A NA+LK+LEEPP+ V FIL + I T+ SRCL Sbjct: 119 ARYKVYLIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQ 178 Query: 188 ---SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SL L + L +I+ + + AA GS+ A+ +L Sbjct: 179 IPPSLIVTRLSEILSMERIVADATALKLLAKAAKGSLRDALSLL 222 >gi|328951662|ref|YP_004368997.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] gi|328451986|gb|AEB12887.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] Length = 563 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 32/270 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R PV + G E +++ L + R+ A LF G +G+GK T A V Sbjct: 6 RRARPVTFDAVVGQEHVKEVLQNAIRTDRLAQAYLFSGPRGVGKTTTARLIAMSVGCQAA 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C + H D L + + N +V+++R +R + Sbjct: 66 PEARPCGAC--ENC--LAVRDGRHP--DVLEIDAASN---------NSVEDVRELRERIL 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L +V ++D M+++A NALLK+LEEPP V+FI + + TI SR Sbjct: 111 LAPIQSARKVFILDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRTQH 170 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYID 241 +F L+E + L+Q+ ++ + ++IA A VAR D + I+ + Sbjct: 171 FRFRRLTEEEIAGKLQQI------TRAEGLEIAPEALALVARMADGAMRDAESILDRLLA 224 Query: 242 L----IHIPRQEYAL-----QKMQQIADEL 262 L + + E AL ++QQ+A+ L Sbjct: 225 LGKNPVTLADAEAALGLPPQHRIQQLAEAL 254 >gi|295103730|emb|CBL01274.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3] Length = 321 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G+ +++ + Q + R+ H++L GE G+G A L P A + Sbjct: 5 RMEGNAELKTSVQQMLATRRLTHSVLLVGEAGLGTGFAARCIAADYLY-PVGGAAAEALL 63 Query: 73 NPDPCSPFVK--QMASHALHDFLY---LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + C K + S + + +S S GK+ V ++ +R + T+ Sbjct: 64 RGECCRAVAKAGKRDSGTVETGIVREAISVSGMGSGGKY----LVGQVTAMRSEIFNTSL 119 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 + R +++ V+ MN +ANALLK +EEPP+ VLF+L + + ++L TIRSRC+S Sbjct: 120 SAEGRAVLLYHVERMNEESANALLKVMEEPPEGVLFLLTADSLASVLPTIRSRCVSFAVA 179 Query: 188 SLS 190 +S Sbjct: 180 PVS 182 >gi|262372722|ref|ZP_06066001.1| DNA polymerase III [Acinetobacter junii SH205] gi|262312747|gb|EEY93832.1| DNA polymerase III [Acinetobacter junii SH205] Length = 673 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCRAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFV-KIA--AYGSVARAIKI 227 CL L+ + + L L ++ RD + +IA A GS+ A+ + Sbjct: 169 CLQFTLRPLAVDEITTHLTTILDKESINADRDAIWQIAESAQGSLRDALSL 219 >gi|332173842|gb|AEE23096.1| DNA-directed DNA polymerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 297 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD--PCSPFV 81 LSQ + +HHALL +G +GIGK + +L + A D PC Sbjct: 4 LSQRAMTHSLHHALLLKGARGIGKTEFAEQLGQFLLCANKGTNAHTAGTKSDLVPCG--- 60 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRT--VITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 L L+ +P + R+ I VD IR LS +A +V++I Sbjct: 61 ------HCQSCLLLTAGNHPDLYEIRSDKQIGVDAIREAIKKLSGSAQLSGAKVLIIHDA 114 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 M ++ANALLK+LEEP +L+SH S +L TI SRC + S Sbjct: 115 HTMTESSANALLKTLEEPTNNTFLLLLSHQSERLLPTILSRCEKVALPS 163 >gi|330954421|gb|EGH54681.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae Cit 7] Length = 736 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL S4-171] Length = 547 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 26/245 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA LF G +G GK + +A + P C K ++ D Sbjct: 5 KTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECE------ICKGTTDGSIPD 58 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L + + N V+EIR IR + ++V +ID V ++ A NALL Sbjct: 59 VLEIDAASNNG---------VEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALL 109 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE---QLKIMGWDS 208 K+LEEPP+ V+FIL + + TI SR F ++ ++ LE + + + +D Sbjct: 110 KTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLEFILKEEKIPYDE 169 Query: 209 KR-DFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ 267 K V AA G + A+ +L D++IS + + + E AL+ +A LL++ Sbjct: 170 KALMIVARAAEGGMRDALSLL----DQVISYGSEEVTV---EDALEITGSVAQGLLTKLV 222 Query: 268 KIAFD 272 AFD Sbjct: 223 SAAFD 227 >gi|165977253|ref|YP_001652846.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190151171|ref|YP_001969696.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|165877354|gb|ABY70402.1| DNA polymerase III delta' subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916302|gb|ACE62554.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 327 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 L++ + GR HHALLF+ + G+G TL R+ H L QNP +A + C S + Sbjct: 13 LTESFLHGRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLL 66 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H DF + L P GK I +D++R L + G V+ I + Sbjct: 67 TAAGNHP--DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAER 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++NALLK+LEEP V F+L + +L TI+SRC Sbjct: 118 LTEASSNALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 157 >gi|74317560|ref|YP_315300.1| DNA polymerase III subunit delta' [Thiobacillus denitrificans ATCC 25259] gi|74057055|gb|AAZ97495.1| DNA polymerase III delta prime subunit [Thiobacillus denitrificans ATCC 25259] Length = 327 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 16/172 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 R ALL G +G+GK+ L +A +L PD S V P + A Sbjct: 21 RPAQALLLAGPRGVGKSALALEWARALLCEAPRPDGSACGV--------CPACHWFETGA 72 Query: 89 LHDFLYLSY-SLNPKTGKWR--TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 DF + K G+ R T I VD+ R F+ L+ +RV+++DP D +N Sbjct: 73 HPDFRRVGLQEKTSKEGETRLATAIEVDQARDAVDFVQLSTYRAGYRVVLVDPADSLNLA 132 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC--LSIKFNSLSENNLY 195 AANALLK LEEPP +F+L++ +L TIRSRC L + +L++ + Sbjct: 133 AANALLKVLEEPPLNTVFVLVADQPRRLLPTIRSRCTRLDVGLPALAQATAW 184 >gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J2-064] Length = 551 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 26/245 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA LF G +G GK + +A + P C K ++ D Sbjct: 8 KTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECE------ICKGTTDGSIPD 61 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L + + N V+EIR IR + ++V +ID V ++ A NALL Sbjct: 62 VLEIDAASNN---------GVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALL 112 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK----ALEQLKIMGWD 207 K+LEEPP+ V+FIL + + TI SR F ++ ++ LE+ KI + Sbjct: 113 KTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDE 172 Query: 208 SKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ 267 V AA G + A+ +L D++IS + + + E AL+ +A LL++ Sbjct: 173 KALMIVARAAEGGMRDALSLL----DQVISYGSEEVTV---EDALEITGSVAQNLLTKLV 225 Query: 268 KIAFD 272 AFD Sbjct: 226 SAAFD 230 >gi|332171596|gb|AEE20851.1| DNA polymerase III, subunits gamma and tau [Krokinobacter diaphorus 4H-3-7-5] Length = 634 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK + A + N D Sbjct: 9 RKYRPTTFKDVVGQQAITNTLENAIRNNHLAQALLFCGPRGVGKTSCARILAKQI--NTD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +P DF + + L+ + +VD+IR + + Sbjct: 67 ENTSPD--------------------EDFAFNVFELDAASNN-----SVDDIRSLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSAAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQLKI-MGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIIS 237 F ++ + K L Q+ I G ++ + + I A G++ A+ I D+++S Sbjct: 162 FDFKRITVTDARKHLVQIAIEEGIEADEEALHIIAQKADGAMRDALSIF----DRVVS 215 >gi|331015914|gb|EGH95970.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 736 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|303252693|ref|ZP_07338855.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648432|gb|EFL78626.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 327 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 L++ + GR HHALLF+ + G+G TL R+ H L QNP +A + C S + Sbjct: 13 LTESFLHGRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLL 66 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H DF + L P GK I +D++R L + G V+ I + Sbjct: 67 TAAGNHP--DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAER 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++NALLK+LEEP V F+L + +L TI+SRC Sbjct: 118 LTEASSNALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 157 >gi|262370379|ref|ZP_06063705.1| DNA polymerase III [Acinetobacter johnsonii SH046] gi|262314721|gb|EEY95762.1| DNA polymerase III [Acinetobacter johnsonii SH046] Length = 327 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 11/184 (5%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H++I + L+ + + H LLF G++G GK ++ VL R N Sbjct: 13 HQNIWETLTTRF--PNIGHGLLFYGKKGCGKEIFAEQFLAWVL-------CAKRQPNHLA 63 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C A Y+ + + K I +++IR + F+ T + WRVI+I Sbjct: 64 CGECGSCQWLKADTHPNYVHITTDEDNKKQNVKIKIEKIRDLLPFVQQTVDG--WRVIII 121 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 +P + +N +ANALLK+LEEP +V+ IL++ + +TIRSR + ++E + Sbjct: 122 EPAEALNTASANALLKTLEEPGDRVVIILLADHYLKLPATIRSRLQHFALDRINEQQAEQ 181 Query: 197 ALEQ 200 L Q Sbjct: 182 FLNQ 185 >gi|163789946|ref|ZP_02184382.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium sp. AT7] gi|159874886|gb|EDP68954.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium sp. AT7] Length = 606 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 21/230 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + I + L + HA LF G +G GK + +A + P+ Sbjct: 8 RVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFA-KAINCPN 66 Query: 64 FSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C + C + L+D + + + N V+EIR IR Sbjct: 67 LKDGEPCNEC--ETCHSITQ----GQLNDVIEIDAASNNG---------VEEIRDIRDKA 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SR Sbjct: 112 KYAPTSADYKVYIIDEVHMLTTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRTQ 171 Query: 183 SIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + + L Q KI + + AA G + A+ IL Sbjct: 172 RFDFKRISVRDSCERMAYILNQEKITYQEEALTVIARAAEGGMRDALSIL 221 >gi|300769760|ref|ZP_07079642.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492668|gb|EFK27854.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 569 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 7 RVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHHL 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C+ K L+D + + + N V+EIR IR Sbjct: 67 VDGEPCNEC--ETCTAITKGQ----LNDVIEIDAASNNG---------VEEIRDIRDKAK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 112 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQR 171 Query: 184 IKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + Y + + K + +D K + AA G + A+ IL D++IS Sbjct: 172 FDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSIL----DQVIS 225 >gi|124021779|ref|YP_001016086.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9303] gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9303] Length = 604 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 24/207 (11%) Query: 2 IDRAFDPVYN----QR---LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P+++ QR L G + I LS S R+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L + + P+PC K +A+ D + + + N TG V Sbjct: 60 LARSLNCLNCDQP-----TPEPCGNCELCKSIAAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRELIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALE 199 +L TI SRC F + L K LE Sbjct: 166 VLPTILSRCQRFDFRRIPLEALEKHLE 192 >gi|221067924|ref|ZP_03544029.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni KF-1] gi|220712947|gb|EED68315.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni KF-1] Length = 723 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 22/204 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ R L Sbjct: 5 VLARKYRPRTFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVS-RILAKSLN 63 Query: 61 ------NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 N + P +C C+ ++ S D+ L + N VDE Sbjct: 64 CQGLDGNGGITATPCGVCAA--CT----EIDSGRFPDYTELDAASN---------RGVDE 108 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 ++ + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 109 VQSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 Query: 175 STIRSRCLSIKFNSLSENNLYKAL 198 T+ SRCL ++ + + L Sbjct: 169 VTVLSRCLQFNLRPMAPETVLEHL 192 >gi|330981944|gb|EGH80047.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 736 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae ACS-120-V-Col10a] gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae ACS-120-V-Col10a] Length = 641 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L + HA LF G +G GK + +A + P+ Sbjct: 18 RKWRPQIFADIVGQEAVSRTLKNAINQDKTSHAYLFNGPRGTGKTSAAKIFA-KAINCPN 76 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ + + L D + + + N V+EIR IR Sbjct: 77 -------QNDGEPCNECHLCQAITEGRLADVIEIDAASNN---------GVEEIRDIRDK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP +V+FIL + + I +T+ SR Sbjct: 121 VRYAPTEANYKVYIIDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRT 180 Query: 182 LSIKFNSLS 190 F LS Sbjct: 181 QRFDFKRLS 189 >gi|303251158|ref|ZP_07337342.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650009|gb|EFL80181.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 327 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 L++ + GR HHALLF+ + G+G TL R+ H L QNP +A + C S + Sbjct: 13 LTESFLHGRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLL 66 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H DF + L P GK I +D++R L + G V+ I + Sbjct: 67 TAAGNHP--DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAER 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++NALLK+LEEP V F+L + +L TI+SRC Sbjct: 118 LTEASSNALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 157 >gi|251789240|ref|YP_003003961.1| DNA polymerase III subunit delta' [Dickeya zeae Ech1591] gi|247537861|gb|ACT06482.1| DNA polymerase III, delta prime subunit [Dickeya zeae Ech1591] Length = 336 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHALL G+G A+L + ++ +L + P+ +K+ R C+ + M + Sbjct: 22 RGHHALLLYAIDGMGDASLAYAFSRWLLCRQPEGAKSCGR-CHA------CELMNAGTHP 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ ++L P+ GK + VD +R + + + G +VI + + + AANAL Sbjct: 75 DW----HTLIPEKGK--QSLGVDAVREVLEQVYQRSRQGGAKVIWLPRAESLTEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LK+LEEPP + F+L +L+T+RSRCL + + +E + ++ L+ G D Sbjct: 129 LKTLEEPPAQTYFLLGCREPGQLLATLRSRCLHLYLDVPTE---LQGMQWLRTRGHD 182 >gi|92113582|ref|YP_573510.1| DNA polymerase III subunits gamma and tau [Chromohalobacter salexigens DSM 3043] gi|91796672|gb|ABE58811.1| DNA polymerase III, gamma subunit [Chromohalobacter salexigens DSM 3043] Length = 723 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFHELVGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 RQGVTSVPCGECE------TCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ + L + Sbjct: 170 CLQFTLKNMPPERVVGHLSHI 190 >gi|89898478|ref|YP_515588.1| DNA polymerase III subunits gamma and tau [Chlamydophila felis Fe/C-56] gi|89331850|dbj|BAE81443.1| DNA polymerase III gamma/tau [Chlamydophila felis Fe/C-56] Length = 445 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 20/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + + L R+ HA LF G +G GK TL +A + P Sbjct: 11 RKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKALNCTEP 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C C K+++S D + + + + +++IR+I + Sbjct: 71 TANNEPCNRC----C--ICKEISSGTSLDVIEIDGASHRG---------IEDIRQINETV 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI SRC Sbjct: 116 LFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILSRCQ 175 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHY 230 + + E + LE + + + ++ R+ + AA GS+ A + Y Sbjct: 176 KMHLKRIPETMIVDKLESISQDISLETSREALLPIARAAQGSLRDAESLYDY 227 >gi|229587233|ref|YP_002845734.1| DNA polymerase III subunits gamma and tau [Rickettsia africae ESF-5] gi|228022283|gb|ACP53991.1| DNA polymerase III gamma and tau chains [Rickettsia africae ESF-5] Length = 533 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 39 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 98 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 99 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 146 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP V+FI + I +TI SRC Sbjct: 147 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRCQ 206 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 207 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 256 >gi|325298513|ref|YP_004258430.1| putative DNA polymerase III, delta subunit [Bacteroides salanitronis DSM 18170] gi|324318066|gb|ADY35957.1| putative DNA polymerase III, delta subunit [Bacteroides salanitronis DSM 18170] Length = 375 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 47/258 (18%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA 67 +Y + + G + ++ L R+ HA+LF G G GK L A ++ +NP Sbjct: 1 MYIKDIIGQNEAKQHLLTLAHERRVPHAMLFCGPSGSGKLPLALALARYLTCENPG---- 56 Query: 68 PVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGK----------WR-------- 107 D C P + M +A D + + K+G+ WR Sbjct: 57 -----EEDACGKCPSCQMMNKYAHPDVHFAFPVIKRKSGRDTVSADFLNEWRQQLLDTPY 111 Query: 108 ----------------TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 I V E I+ LSL ++ G ++++++ + MN N LL Sbjct: 112 FTFHQWLARIGTENQQAQIFVSESDEIQRALSLKSSRGGYKIMIVWLPEKMNAECGNKLL 171 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K LEEPP + +F+L+S A T++ T+ SR + L E ++ L ++ + R+ Sbjct: 172 KLLEEPPAQTVFMLVSEAPDTLMPTLTSRMQRFRLPPLHETDIASMLSSRYMLTPEDSRE 231 Query: 212 FVKIAAYGSVARAIKILH 229 ++ GSV AI+ +H Sbjct: 232 IAHLSE-GSVITAIENIH 248 >gi|259048077|ref|ZP_05738478.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens ATCC 49175] gi|259035138|gb|EEW36393.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens ATCC 49175] Length = 572 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + + HA LF G +G GK + +A + P+ Sbjct: 8 RKWRPQTFDDMVGQSAVTHTLKNAISNQKTSHAYLFTGPRGTGKTSAAKVFA-KAINCPN 66 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ K + + + D + + + N V+EIR IR Sbjct: 67 -------QKNGEPCNECEICKGITNGTIGDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++ A NALLK+LEEPPQKV+FIL + I +TI SR Sbjct: 111 ARYAPTQAEYKIYIIDEVHMLSTGAFNALLKTLEEPPQKVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKAL 198 F ++ + L Sbjct: 171 QRFDFRRITSQEIIDRL 187 >gi|46143618|ref|ZP_00134804.2| COG0470: ATPase involved in DNA replication [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209278|ref|YP_001054503.1| DNA polymerase III subunit delta' [Actinobacillus pleuropneumoniae L20] gi|126098070|gb|ABN74898.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 327 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 L++ + GR HHALLF+ + G+G TL R+ H L QNP +A + C S + Sbjct: 13 LTESFLHGRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLL 66 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H DF + L P GK I +D++R L + G V+ I + Sbjct: 67 TAAGNHP--DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAER 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++NALLK+LEEP V F+L + +L TI+SRC Sbjct: 118 LTEASSNALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 157 >gi|86130548|ref|ZP_01049148.1| DNA polymerase III subunit gamma/tau [Dokdonia donghaensis MED134] gi|85819223|gb|EAQ40382.1| DNA polymerase III subunit gamma/tau [Dokdonia donghaensis MED134] Length = 643 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 41/242 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK + A + N D Sbjct: 9 RKYRPTTFKDVVGQQAITNTLENAIQNNHLAQALLFCGPRGVGKTSCARILAKQI--NTD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +P DF + + L+ + +VD+IR + + Sbjct: 67 ENTSPD--------------------EDFAFNVFELDAASNN-----SVDDIRSLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSAAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 F +I D+++ V+IAA + + LH K + D + Sbjct: 162 FDFK--------------RITVADARKHLVQIAAEEGIEADEEALHIIAQKADGAMRDAL 207 Query: 244 HI 245 I Sbjct: 208 SI 209 >gi|225870106|ref|YP_002746053.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. equi 4047] gi|225699510|emb|CAW93067.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. equi 4047] Length = 558 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 17/180 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRM 71 + G I L Q S ++ HA LF G +G GK + +A + P+ K P Sbjct: 16 EMVGQSVISTTLKQAVESEKISHAYLFSGPRGTGKTSAAKIFA-KAMNCPNQVKGEPCNH 74 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + + + +L D + + + N VDEIR IR + + + Sbjct: 75 C--DIC----RDITTGSLEDVIEIDAASNNG---------VDEIRDIRDKSTYAPSRATY 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR +F ++ + Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQ 179 >gi|311694776|gb|ADP97649.1| DNA polymerase III subunits gamma and tau [marine bacterium HP15] Length = 650 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 19/196 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L S R+HHA LF G +G+GK T+G R L Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALESQRLHHAYLFTGTRGVGKTTIG-RLLARCLN 63 Query: 61 NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P+PC +++ D + + + +TG VD++R + Sbjct: 64 C-------ETGVTPNPCGECSSCQEIQEGRFVDLIEIDAAS--RTG-------VDDMREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ Sbjct: 108 TDNVQYAPTRGRYKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 Query: 179 SRCLSIKFNSLSENNL 194 SRCL ++ ++ Sbjct: 168 SRCLQFNLKRMTPEHI 183 >gi|262375322|ref|ZP_06068555.1| DNA polymerase III [Acinetobacter lwoffii SH145] gi|262309576|gb|EEY90706.1| DNA polymerase III [Acinetobacter lwoffii SH145] Length = 710 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C C+ + D + + + K V++ R + Sbjct: 64 ETGITSTPCEVCAT--CTA----VNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + + L Sbjct: 169 CLQFTLRPLAVDEITEHL 186 >gi|254514492|ref|ZP_05126553.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium NOR5-3] gi|219676735|gb|EED33100.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium NOR5-3] Length = 557 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 25/234 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPATFDALVGQEHVLQALRHALDSNRLHHAYLFTGTRGVGKTTIARILARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S +P C C + + D + + + K V++ R + Sbjct: 65 EKGVSASPCGECGS--CLEITEGRSV----DLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRYKVYLIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKI 227 CL ++S + +E L+ + K DF + AA GS+ A+ + Sbjct: 170 CLQFNLKNMSAE---RVVEHLRDILAQEKVDFDEPALWQLGRAAAGSMRDALSL 220 >gi|85713265|ref|ZP_01044289.1| DNA polymerase III, delta prime subunit, ATPase [Idiomarina baltica OS145] gi|85692909|gb|EAQ30883.1| DNA polymerase III, delta prime subunit, ATPase [Idiomarina baltica OS145] Length = 294 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 49/73 (67%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 + + VDE+RR+ F+ TAN G RVI ++ +D M AANA+LK LEEPP+ V+++L Sbjct: 84 STLGVDEVRRLTRFIHQTANQGGRRVIYLEVMDRMTEQAANAILKILEEPPENVVWLLSV 143 Query: 168 HASPTILSTIRSR 180 IL+T+RSR Sbjct: 144 EQPERILATLRSR 156 >gi|299782857|gb|ADJ40855.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 563 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 8 RVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCHHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + L+D + + + N V++IR IR + Sbjct: 68 TDGEPCNECE------LCQAITAGQLNDVIEIDAASNNG---------VEQIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 113 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + ++ L+Q K+ + + AA G + A+ IL Sbjct: 173 FDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSIL 221 >gi|227514026|ref|ZP_03944075.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227087612|gb|EEI22924.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 563 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 8 RVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCHHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + L+D + + + N V++IR IR + Sbjct: 68 TDGEPCNECE------LCQAITAGQLNDVIEIDAASNNG---------VEQIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 113 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + ++ L+Q K+ + + AA G + A+ IL Sbjct: 173 FDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSIL 221 >gi|167042817|gb|ABZ07535.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_ANIW137I15] Length = 347 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 127/306 (41%), Gaps = 41/306 (13%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + L + + +GRM + LF G +G+GK T +AG +L K D Sbjct: 8 GQDRAVSGLRRDFSTGRMVPSYLFVGPEGVGKTTTAIAFAGLLL----CKKGARGYEAED 63 Query: 76 PCS--PFVKQMASHALHDFLYLSYSLN-PKTGKWRTVITVDEIRRIRYFLSLTANT---G 129 C +++ + + D + + K GK+ E +IR ++ G Sbjct: 64 ACGVCDACRKVRAESHPDLMIVRRDGQFIKVGKFEKDRKRGEPPQIRQLIAAAQRKPYEG 123 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V+++D M AANALLK+LEEPP + IL + + T+ SRC I+F L Sbjct: 124 PVKVLVVDEAHRMKNEAANALLKTLEEPPPGTVIILTAAMLGALPQTVVSRCRVIRFRKL 183 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + L +E+L+ + R V A G + RA L D +++ + R+ Sbjct: 184 ERSWLASEVERLRGRSAEEAR-LVASFADGRMDRA---LEADPEEVFA---------RRT 230 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLV 309 AL ELL D +E K+ G EEA+ + ++ SLV Sbjct: 231 KAL--------ELL--------DAALEGRTAAALKNVSGVGRPG--EEAEALLDVFLSLV 272 Query: 310 KRVHAF 315 + V A Sbjct: 273 RDVRAV 278 >gi|222055244|ref|YP_002537606.1| DNA polymerase III, delta prime subunit [Geobacter sp. FRC-32] gi|221564533|gb|ACM20505.1| DNA polymerase III, delta prime subunit [Geobacter sp. FRC-32] Length = 320 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + L + +GR+ HA LFEG +G GK T V Sbjct: 6 ILGQDTPISVLKRSLAAGRLAHAYLFEGVEGCGKKTTALALIEAVFCGKG---------- 55 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C P ++++S D + + P G + I +D+IR ++ L+ Sbjct: 56 -DGCGHCPSCRKISSMQHPDM----HLIEPD-GAF---IKIDQIRSLQKELAYRPFEAPK 106 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 + +ID + +N+ A NALLK+LEEP L IL++ +L TI SRC + F+ L E Sbjct: 107 KACIIDGAERLNQAAGNALLKTLEEPSGNALIILVTSQPSVVLPTILSRCQRLVFHGLPE 166 Query: 192 NNL 194 + Sbjct: 167 ETI 169 >gi|237799328|ref|ZP_04587789.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022184|gb|EGI02241.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] Length = 384 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L S R+HHA LF G +G+GK T+ A + + P C+ Sbjct: 1 MVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTCS 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K++ D + + + K V++ R + + + G ++V Sbjct: 61 ------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQYAPSRGRFKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL +++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTPER 165 Query: 194 LYKALEQL 201 + + L + Sbjct: 166 VVEHLTHV 173 >gi|50085452|ref|YP_046962.1| DNA polymerase III delta' [Acinetobacter sp. ADP1] gi|49531428|emb|CAG69140.1| DNA polymerase III, delta prime subunit [Acinetobacter sp. ADP1] Length = 331 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ H LLF G++G GK + VL K P C ++K +H Sbjct: 28 QVGHGLLFYGKKGCGKDAFTQHFLAWVLCT---HKKPEGACGECVSCQWLKS-DTHPN-- 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 Y+ + + K I +++IR + F+ T + WRVI+I+P + +N ++NALL Sbjct: 82 --YVHITTDEDNKKQNAKIKIEKIRELLPFVQQTVDG--WRVIVIEPAEALNIASSNALL 137 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 K+LEEP +++L +L++ + +TIRSR + +S + L+Q Sbjct: 138 KTLEEPGERILIVLLADHYLKLPATIRSRLQHFSLDRVSTVQAHDYLQQ 186 >gi|116747606|ref|YP_844293.1| DNA polymerase III subunit delta' [Syntrophobacter fumaroxidans MPOB] gi|116696670|gb|ABK15858.1| DNA polymerase III, delta prime subunit [Syntrophobacter fumaroxidans MPOB] Length = 335 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 19/211 (9%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCN 73 G E ++ L + +G + HA+LF G G+GK + A V L+ D Sbjct: 8 GQERTKRLLKRMARAGTLPHAVLFSGMAGVGKLRVARELAKLVNCLEPRDDESC------ 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C K H H L++ S T I +D IR +R + G +RV Sbjct: 62 -DRCISCRKIDEGH--HPDLFVIRSEG-------TFIKLDRIRELRERVRFRPFEGRFRV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++I+ ++ + NALLK LEEPP+ LF+L + +L TI SRC ++ L + Sbjct: 112 VIIENAQHLHDESGNALLKVLEEPPRANLFLLTAIEPQMLLPTIVSRCSHLRLQPLEDEV 171 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 + L + R+ +++ GS+ RA Sbjct: 172 IAGELAASLKIPEAQARELTRLSG-GSLDRA 201 >gi|262372466|ref|ZP_06065745.1| DNA polymerase III delta prime subunit [Acinetobacter junii SH205] gi|262312491|gb|EEY93576.1| DNA polymerase III delta prime subunit [Acinetobacter junii SH205] Length = 328 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G++G K R+ VL +K C CS + + S ++++ Sbjct: 30 HGLLFYGKKGCAKQEFTDRFVAWVLC---LNKQSENACGE--CSS-CQWLKSDTHPNYVH 83 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + K K I +++IR + F+ T WRV++I+P + +N ++NALLK+L Sbjct: 84 ITTDEDNK--KQNAKIKIEKIRDLLPFVQQTGEG--WRVVVIEPAEALNIASSNALLKTL 139 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 EEP +KV+ IL++ + +TIRSR + L + + Sbjct: 140 EEPGEKVVLILVADHYLKLPATIRSRLQHFALDRLKDED 178 >gi|184154759|ref|YP_001843099.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum IFO 3956] gi|260663212|ref|ZP_05864104.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum 28-3-CHN] gi|183226103|dbj|BAG26619.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum IFO 3956] gi|260552404|gb|EEX25455.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum 28-3-CHN] Length = 563 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 8 RVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCHHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + L+D + + + N V++IR IR + Sbjct: 68 TDGEPCNECE------LCQAITAGQLNDVIEIDAASNNG---------VEQIRDIRDKVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 113 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + ++ L+Q K+ + + AA G + A+ IL Sbjct: 173 FDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSIL 221 >gi|145633311|ref|ZP_01789042.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 3655] gi|144986157|gb|EDJ92747.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 3655] Length = 688 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K + D + + + + V++ R + Sbjct: 65 VHGVTATPCGEC--ENC----KAIEQGNFIDLIEIDAASRTR---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +L E + + L Sbjct: 170 CLQFHLKALDETQISQHL 187 >gi|330910265|gb|EGH38775.1| DNA polymerase 3 subunits gamma and tau [Escherichia coli AA86] Length = 620 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|330718916|ref|ZP_08313516.1| DNA polymerase III subunits gamma and tau [Leuconostoc fallax KCTC 3537] Length = 381 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 39/254 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L +G+ HA LF G +G GK + A + Sbjct: 8 RVYRPRTFDDMVGQEIITQTLQNAIQTGQTGHAYLFSGPRGTGKTS-----AAKI----- 57 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 F+KA N P Q + D + + + N VDEIR IR + Sbjct: 58 FAKA----VNGIPADQDDAQ-----IPDIIEIDAASNNG---------VDEIRNIRDSAN 99 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK+LEEPP V FIL + I +TI SR Sbjct: 100 YAPIEAQFKIYIIDEVHMLSTGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQR 159 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 +F +S + + L+Q I + + AA G + A+ IL D++I+ Sbjct: 160 FEFKRISTQQMQQRMSYILDQQNIAYDEDALRIIANAAEGGMRDALSIL----DQVIAFG 215 Query: 240 IDLIHIPRQEYALQ 253 D + + E ALQ Sbjct: 216 QDHVTV---ENALQ 226 >gi|320184090|gb|EFW58909.1| DNA polymerase III subunits gamma and tau [Shigella flexneri CDC 796-83] Length = 600 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|163756060|ref|ZP_02163176.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1] gi|161323934|gb|EDP95267.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1] Length = 587 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 27/178 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + ALLF G +G+GK T A + N D Sbjct: 9 RKYRPQTFKDVVGQQAITNTLENAIERSHLAQALLFCGPRGVGKTTCARILAKKI--NQD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ NPD DF + + L+ + +VD+IR + + Sbjct: 67 GTE------NPD--------------EDFAFNIFELDAASNN-----SVDDIRSLIEQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRC 159 >gi|291278574|ref|YP_003495409.1| DNA polymerase III gamma/tau subunits [Deferribacter desulfuricans SSM1] gi|290753276|dbj|BAI79653.1| DNA polymerase III, gamma/tau subunits [Deferribacter desulfuricans SSM1] Length = 526 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA LF G +GIGK + +A + S V CN C V+ +L Sbjct: 35 NRISHAYLFTGPRGIGKTSTARIFAKAL---NCLSPEGVNPCNK--CENCVEVTNGTSLD 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 Y ++ + + +DEIR++R + +++ +ID V + A NAL Sbjct: 90 -----VYEIDGASNRG-----IDEIRQLRESVKFLPTKSKYKIYIIDEVHMLTEAAFNAL 139 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 LK+LEEPP V+FI + + I +TI SRC F+ + + Sbjct: 140 LKTLEEPPSYVIFIFATTDAHRIPATILSRCQRFNFSKIPD 180 >gi|149371395|ref|ZP_01890881.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium SCB49] gi|149355533|gb|EDM44092.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium SCB49] Length = 361 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ G + I L + + ALLF G +G+GK + A + N D Sbjct: 9 RKYRPTTFKQVVGQQAITSTLENAIDNNHLAQALLFTGPRGVGKTSCARILAKKI--NSD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ DF + + L+ + +VD+IR + + Sbjct: 67 GTEKED--------------------EDFAFNIFELDAASNN-----SVDDIRNLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQTGKYKVYIIDEVHMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ L+ + + D + A G++ A+ I D+++S Sbjct: 162 FDFRRITVQDIKGHLKDVANAENVNAEDDALHIIAQKADGALRDALSIF----DRVVS 215 >gi|269926466|ref|YP_003323089.1| DNA polymerase III, delta prime subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790126|gb|ACZ42267.1| DNA polymerase III, delta prime subunit [Thermobaculum terrenum ATCC BAA-798] Length = 345 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 10/216 (4%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G++ + LS R + LF G +GK+TL +A +L + + S P C Sbjct: 11 GNKQALRLLSAAKAKNRASGSWLFTGPPSVGKSTLARWFAALLLCSDETSDYPCGQC--- 67 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 +++ + D +S +L ++GK I +D IR I + L +V Sbjct: 68 ---IHCRKIYHGSHPDVETISLALQAEQSGKPSREIGIDSIRNIIERIYLRPFEANRKVY 124 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I+ M AANA LK+LEEPP V +LI+ ++ TIRSRC + + + + Sbjct: 125 LIEDASTMTEEAANAFLKTLEEPPDFVTIVLIAIDDYSLPETIRSRCYRVNLQPVPHSEI 184 Query: 195 YKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKILH 229 + L + +G++ + + + + G AI+ H Sbjct: 185 TRYL--VNSLGFEQEEANMIATLSNGRPGWAIRATH 218 >gi|320192888|gb|EFW67528.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. EC1212] gi|326341236|gb|EGD65028.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. 1044] gi|326345989|gb|EGD69728.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. 1125] Length = 620 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|312869732|ref|ZP_07729879.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris PB013-T2-3] gi|311094781|gb|EFQ53078.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris PB013-T2-3] Length = 601 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + L + ++ HA LF G +G GK + +A + + Sbjct: 8 RVWRPQRFDELVGQQVVTQTLKNAIVTHQISHAYLFAGPRGTGKTSAAKIFAKAINCH-- 65 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ K + L+D + + + N V+EIR IR Sbjct: 66 ------HLKDGEPCNECAICKAITHGQLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + Y+ L+Q ++ + + AA G + A+ IL D+++S Sbjct: 171 QRFDFRRISAQDAYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSIL----DQVLS 226 >gi|153006600|ref|YP_001380925.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. Fw109-5] gi|152030173|gb|ABS27941.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. Fw109-5] Length = 606 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 17/191 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS +G++ HA LF G +G+GK T R L Sbjct: 5 VLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTA-RLVAKAL- 62 Query: 61 NPDFSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C C+P V+ A+ D + + + N VD +R I Sbjct: 63 --NCEKGPTAEPCGA--CTPCVEIAEGRAV-DVVEIDAASN---------NGVDNVRDIV 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V ++D V ++ A NALLK+LEEPP+ V F+L + + TI S Sbjct: 109 EAVKYRPARDRYKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILS 168 Query: 180 RCLSIKFNSLS 190 RC F L+ Sbjct: 169 RCQRFDFRRLT 179 >gi|15602229|ref|NP_245301.1| DNA polymerase III subunits gamma and tau [Pasteurella multocida subsp. multocida str. Pm70] gi|12720609|gb|AAK02448.1| DnaX [Pasteurella multocida subsp. multocida str. Pm70] Length = 714 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSDVVGQTHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V +PC K + D + + + K V++ R + Sbjct: 63 ------NCVHGVTAEPCGECEHCKAIEQGNFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +L + + + LE Sbjct: 168 SRCMQFHLKALEQQQIAQHLE 188 >gi|302185103|ref|ZP_07261776.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae 642] Length = 736 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 8 RKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K++ D + + + K V++ R + + Sbjct: 68 ITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL Sbjct: 113 YAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQ 172 Query: 184 IKFNSLSENNLYKAL 198 +++ + + L Sbjct: 173 FSLKNMTPERVVEHL 187 >gi|189912832|ref|YP_001964387.1| DNA polymerase III subunit gamma and tau [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777508|gb|ABZ95809.1| DNA polymerase III, gamma and tau subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 492 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVK 82 L + S ++ HA +F G +G+GK T+ A + + PD V CN C+ ++ Sbjct: 30 LQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRLNCERPD----GVEPCNE--CTSCLE 83 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 ++ +D + + N VD IR +R + A G +RV ++D V + Sbjct: 84 ITKGNS-NDVFEIDAASNS---------GVDNIRELRENVKFNAMGGKYRVYILDEVHML 133 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + A NALLK+LEEPP V+FIL + I TI SRC F + L +E L Sbjct: 134 SGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKVPVTVLQNYIETL 192 >gi|149279562|ref|ZP_01885691.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39] gi|149229598|gb|EDM34988.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39] Length = 624 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 20/216 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + ++ A LF G +G+GK T R + + Sbjct: 9 RKYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCA-RILAKTINCTN 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + A C C + H+ +F L + N +VD+IR + + Sbjct: 68 LT-AEQEACGT--CESCISFQTGHSF-NFHELDAASNN---------SVDDIRSLIDQVR 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +++ +ID V ++ NA NA LK+LEEPP +FIL + IL TI SRC Sbjct: 115 IPPQAGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI 174 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 FN + +++ L ++ I R+ + + A G Sbjct: 175 FDFNRIQVDDISSHLNRIAI------RENISVEADG 204 >gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT] gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT] Length = 539 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R+ HA LF G +G GK + Sbjct: 8 REWRPQTFDEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTA----------KI 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 FSKA V NP +PC+ K++++ D + + + K VD+IR + Sbjct: 58 FSKA-VNCLNPQDGEPCNECEMCKKISAGLSIDVSEMDAASHNK---------VDDIRDL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V ++D + + A NA LK+LEEPP+ V+FIL + + TI Sbjct: 108 IEEVKYPPQEGRYKVYIMDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC F + ++ L K ++ I G + + + G++ A+ IL Sbjct: 168 SRCQRFDFKRIKSDDILGRLIKITKEQGIFGDNKSLKLIARMSDGAMRDALSIL 221 >gi|182419998|ref|ZP_02951232.1| DNA polymerase III subunits gamma and tau [Clostridium butyricum 5521] gi|237666397|ref|ZP_04526382.1| DNA polymerase III delta' subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376035|gb|EDT73622.1| DNA polymerase III subunits gamma and tau [Clostridium butyricum 5521] gi|237657596|gb|EEP55151.1| DNA polymerase III delta' subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 30/188 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++ GHE I +++ + HA L G GIGK+ + +Y + + P + V + Sbjct: 2 RKILGHEGIINGINKRKLNNSFSHANLIVGADGIGKSVIA-KYLSNNIIEPRDNAESVDI 60 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P S + VD++R I +S G Sbjct: 61 VRYYPSS-----------------------------SSFGVDDVRHIIDEVSKKPYEGDK 91 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ D M A NALLK++EEPP V IL+S + TIL TI+SRC K LS+ Sbjct: 92 KVLILYKCDKMTTQAQNALLKTIEEPPVGVYLILLSDSLETILDTIQSRCQVYKLTPLSK 151 Query: 192 NNLYKALE 199 + + +E Sbjct: 152 EEILEYIE 159 >gi|254252185|ref|ZP_04945503.1| ATPase involved in DNA replication [Burkholderia dolosa AUO158] gi|124894794|gb|EAY68674.1| ATPase involved in DNA replication [Burkholderia dolosa AUO158] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCESPQPNGEPCGTCAACTWFAQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADDGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIVSRC 183 >gi|330963243|gb|EGH63503.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. actinidiae str. M302091] Length = 741 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|330879129|gb|EGH13278.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 739 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|239948372|ref|ZP_04700125.1| DNA polymerase III, subunits gamma and tau [Rickettsia endosymbiont of Ixodes scapularis] gi|239922648|gb|EER22672.1| DNA polymerase III, subunits gamma and tau [Rickettsia endosymbiont of Ixodes scapularis] Length = 509 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EECTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLSFEEIFKLLEYITKKENLKTDIEALRIIAYKSEGSARDAVSIL 232 >gi|301060367|ref|ZP_07201230.1| DNA polymerase III, delta' subunit [delta proteobacterium NaphS2] gi|300445563|gb|EFK09465.1| DNA polymerase III, delta' subunit [delta proteobacterium NaphS2] Length = 354 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 15/223 (6%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 ++ ++ G E + R+ HA LF G GIGK + + + N D P Sbjct: 1 MFFSQIIGQEKAKHLFESVVRRKRVPHAYLFTGIAGIGKTSAAKAFT--MTLNCD---TP 55 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 + C P +++ + DF+ +L P K I +++IR + L + Sbjct: 56 SGLDGCGVC-PSCRKILNGNFPDFI----TLEPDGQK----IKIEQIRALNRSLGYAPFS 106 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +RV++I + M AAN+ LK+LEEPP +F+L + +L TI SRC + F Sbjct: 107 GGYRVVVIHKAEVMTVEAANSFLKTLEEPPPGNIFVLNAAEPRDLLPTIVSRCQRVSFRP 166 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 L + L + + S + + AA GS+ A+++ D Sbjct: 167 LKIEEIVAQLTKETQLDVPSAQILAR-AADGSLGLALRMSGSD 208 >gi|290968136|ref|ZP_06559681.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp. type_1 str. 28L] gi|290781811|gb|EFD94394.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp. type_1 str. 28L] Length = 565 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 21/230 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I + L + ++ HA LF G +G GK + +A V Sbjct: 8 RKWRPKTFEDVVGQRQITETLQKAIIMDKVAHAYLFSGPRGTGKTSTAKIFARAVNCEQG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C ++ H + ++ + + ++++IR +R + Sbjct: 68 TKGHPCNTC----------EICRHIMRGESLDVVEIDAASNR-----SIEDIRTLRETVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++ +ID V + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 FMPAEGKKKIYIIDEVHMLTIEAFNALLKTLEEPPAHVIFILATTEPERIPITILSRCQR 172 Query: 184 IKFNSLSENN-----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F L+ ++ LY A ++ + D+ R + + A G + A+ +L Sbjct: 173 YEFRRLTSDDIAARLLYVAAQEHLSLAADAAR-VLAVKAEGGMRDALSML 221 >gi|229896122|ref|ZP_04511292.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Pestoides A] gi|229701045|gb|EEO89074.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Pestoides A] Length = 653 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + L+ GR+HHA LF G +G+GK ++ A + + P C Sbjct: 13 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGTCA 72 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + G ++V Sbjct: 73 ------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLDNVQYAPARGRFKV 117 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++R++ NALLK+LEEPP V F+L + + TI SRCL +L Sbjct: 118 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 177 Query: 194 LYKALEQL 201 + LE++ Sbjct: 178 IRAQLEKV 185 >gi|163856815|ref|YP_001631113.1| DNA polymerase III, delta' subunit [Bordetella petrii DSM 12804] gi|163260543|emb|CAP42845.1| DNA polymerase III, delta' subunit [Bordetella petrii] Length = 368 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 134 IRIDQIRTLESWFNTATHRGGWRVALLYPAHALNAISANALLKVLEEPPPHTVFLLVADA 193 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L T+ SRC + L +AL+ L+ G D D+ Sbjct: 194 PDRLLPTLVSRCRRL---PLPAPEAAQALQWLQEQGVDGATDW 233 >gi|156742265|ref|YP_001432394.1| DNA polymerase III subunits gamma and tau [Roseiflexus castenholzii DSM 13941] gi|156233593|gb|ABU58376.1| DNA polymerase III, subunits gamma and tau [Roseiflexus castenholzii DSM 13941] Length = 644 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L GR+ HA LF G +G+GK T+ A V ++ P +C Sbjct: 18 LIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCTAPPAERPCGVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + +A D + + + + +V++ R I + +V Sbjct: 77 -ESC----RSIAEGRAVDVIEMDAASH---------TSVEDAREIIERVQFRPAVARTKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC FN Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFN 176 >gi|107028929|ref|YP_626024.1| DNA polymerase III subunit delta' [Burkholderia cenocepacia AU 1054] gi|116689913|ref|YP_835536.1| DNA polymerase III subunit delta' [Burkholderia cenocepacia HI2424] gi|170733251|ref|YP_001765198.1| DNA polymerase III subunit delta' [Burkholderia cenocepacia MC0-3] gi|105898093|gb|ABF81051.1| DNA polymerase III, delta prime subunit [Burkholderia cenocepacia AU 1054] gi|116648002|gb|ABK08643.1| DNA polymerase III, delta prime subunit [Burkholderia cenocepacia HI2424] gi|169816493|gb|ACA91076.1| DNA polymerase III, delta prime subunit [Burkholderia cenocepacia MC0-3] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCESPQPNGEPCGTCAACNWFSQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIISRC 183 >gi|332173131|gb|AEE22385.1| DNA polymerase III, subunits gamma and tau [Glaciecola agarilytica 4H-3-7+YE-5] Length = 893 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C+ ++ D L + + K R ++ + R R Sbjct: 65 ELGMGSKPCGQCS------TCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPTR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 118 --------GRYKIYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +LS + + L Sbjct: 170 CLQFNLKALSRAQIAQQL 187 >gi|320201716|gb|EFW76292.1| DNA polymerase III subunits gamma and tau [Escherichia coli EC4100B] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|295096207|emb|CBK85297.1| DNA polymerase III, delta prime subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 334 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 18/193 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y GR HHALL + G+G L + ++ Q P+ K+ R C + Q Sbjct: 18 YQVGRGHHALLIQALPGMGDDALIYAITRFLMCQQPEGHKSCGKCRGCQ-------LMQA 70 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +H D+ Y+L P+ GK + +D +R + L A G +V+ + + Sbjct: 71 GTHP--DY----YTLEPEKGK--NTLGIDAVREVSEKLYEYARLGGAKVVWLKDAALLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 AANALLK+LEEPP+ F L +L+T+RSRC E+ LE+ + Sbjct: 123 AAANALLKTLEEPPENTWFFLSCREPERLLATLRSRCRLHHLAVPQESWALAWLEREVTV 182 Query: 205 GWDSKRDFVKIAA 217 D+ R +++ + Sbjct: 183 SQDAARSALRLCS 195 >gi|183222800|ref|YP_001840796.1| DNA polymerase III subunit gamma [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781222|gb|ABZ99520.1| DNA polymerase III gamma subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 497 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVK 82 L + S ++ HA +F G +G+GK T+ A + + PD V CN C+ ++ Sbjct: 35 LQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRLNCERPD----GVEPCNE--CTSCLE 88 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 ++ +D + + N VD IR +R + A G +RV ++D V + Sbjct: 89 ITKGNS-NDVFEIDAASNS---------GVDNIRELRENVKFNAMGGKYRVYILDEVHML 138 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + A NALLK+LEEPP V+FIL + I TI SRC F + L +E L Sbjct: 139 SGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKVPVTVLQNYIETL 197 >gi|224824707|ref|ZP_03697814.1| DNA polymerase III, delta prime subunit [Lutiella nitroferrum 2002] gi|224603200|gb|EEG09376.1| DNA polymerase III, delta prime subunit [Lutiella nitroferrum 2002] Length = 335 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 28/239 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ +A LF G GIGK A +L ++P A C + C F +H H Sbjct: 19 RLPNAWLFTGPSGIGKLAFAEHLAASLLCESPRPDHAACGQC--EACRWF-----AHGSH 71 Query: 91 -DFLYLS--------YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 DF L+ K + VI ++ +R + F LTA+ R+++++P + Sbjct: 72 PDFRRLTPLGDDEDEAKEGSKPTRKLPVIKIEAVREVIDFAHLTAHRSGRRIVLVEPAEA 131 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +N AANALLK LEEPP +VLF+L++HA +L TI+SRC + + ++ +AL L Sbjct: 132 LNPAAANALLKILEEPPAEVLFLLVAHAPQRLLPTIKSRCRAFPLTAPTQG---EALAWL 188 Query: 202 KIMGWDSKRDFVKIAAYGSVARAIKILHYDC--DKIISSYIDLIHIPRQEYALQKMQQI 258 G D+ R ++A +G + +D K+ ++D + P A+ +QI Sbjct: 189 DAAGVDNAR--TELAHHGGT----PLFEHDAALAKLRQQFLDALARPTLADAISLAEQI 241 >gi|311111165|ref|ZP_07712562.1| DNA polymerase III, gamma and tau subunits [Lactobacillus gasseri MV-22] gi|311066319|gb|EFQ46659.1| DNA polymerase III, gamma and tau subunits [Lactobacillus gasseri MV-22] Length = 561 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 32/248 (12%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYL 95 +F G +G GK + +A + + + +PC+ +A+ ++D + + Sbjct: 1 MFAGPRGTGKTSCAKIFAKAL--------NCTNLQDGEPCNECENCLAADKGTMNDIIEI 52 Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 + N VDEIR IR + G ++V +ID V ++ A NALLK+LE Sbjct: 53 DAASNN---------GVDEIRDIRDKVKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLE 103 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRD 211 EPP+ V+FIL + + +TI SR F + +++L L Q KI + + Sbjct: 104 EPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLIARMTYILGQEKIDFEEKALE 163 Query: 212 FVKIAAYGSVARAI----KILHYDCDKIISSYIDLIHIPRQEYALQ-KMQQIADELLSQD 266 + A G + ++ +IL YD DK+ Y D + I YA Q K++Q+ +LL Sbjct: 164 VIAQVADGGMRDSLSILDQILSYDQDKV--KYDDALKITG--YAAQEKIEQVLLDLLKGQ 219 Query: 267 QKIAFDFL 274 AF+ + Sbjct: 220 TSEAFEIV 227 >gi|226329028|ref|ZP_03804546.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198] gi|225202214|gb|EEG84568.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198] Length = 495 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 39/250 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITSKPCGQC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 + TI SRCL +L + + LE++ I R + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFHLRALDIDQIATQLEKVLLAEHIENDVRARQLIARAADGSMRDALSL- 220 Query: 229 HYDCDKIISS 238 D+ I+S Sbjct: 221 ---TDQAIAS 227 >gi|320176556|gb|EFW51600.1| DNA polymerase III subunits gamma and tau [Shigella dysenteriae CDC 74-1112] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|303252503|ref|ZP_07338666.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648471|gb|EFL78664.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 679 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + L GR+HHA LF G +G+GK ++ +A + + P C Sbjct: 9 VVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNCETGITATPCGEC- 67 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K + D + + + K V++ R + + G ++V Sbjct: 68 -----ANCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLDNVQYKPTVGRFKV 113 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC+ +L + Sbjct: 114 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALDQAQ 173 Query: 194 LYKALE 199 + LE Sbjct: 174 IANHLE 179 >gi|83645448|ref|YP_433883.1| DNA polymerase III subunit delta' [Hahella chejuensis KCTC 2396] gi|83633491|gb|ABC29458.1| DNA polymerase III delta prime subunit [Hahella chejuensis KCTC 2396] Length = 335 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A+L G+ G+GK L YA +L + +K R C D S + + +H D Sbjct: 30 KVPSAILVAGQSGVGKNRLTSEYAKFLL--CEQAKRLERPCG-DCRSCKLIEAGTHP--D 84 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +++ P+ G I +D++R + F+ R+ ++ P + MN +ANA+L Sbjct: 85 LQWVA----PEDGA--KAIKIDQVRGLGDFIYAKPQISRRRICVLTPAEAMNAYSANAIL 138 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 K+LEEPP V+ +L+S +L TIRSRC + ++ L QL + Sbjct: 139 KTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAPDRESVVNWLTQLDV 190 >gi|78187181|ref|YP_375224.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] gi|78167083|gb|ABB24181.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] Length = 396 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 15/241 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + + GR+ H +F G +G+GK T +A + Sbjct: 5 VIARKYRPAKFADITAQEHITRTIQNALRMGRLGHGYIFSGLRGVGKTTAARVFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 A +PC + DF SLN + +VD+IR +R Sbjct: 65 QRMIDDADWLRDVTEPCG------ECESCRDF-ETGTSLNIAEFDAASNNSVDDIRALRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI SR Sbjct: 118 NVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILHYDCDKII 236 C F + + + L+ + + G + D +++ A GS+ A IL D++I Sbjct: 178 CQRFNFKRIPLPEIQQQLQGICESEGIKVEPDALQLVCRKAQGSMRDAQSIL----DQVI 233 Query: 237 S 237 + Sbjct: 234 A 234 >gi|73541129|ref|YP_295649.1| DNA polymerase III subunit delta' [Ralstonia eutropha JMP134] gi|72118542|gb|AAZ60805.1| DNA polymerase III, delta prime subunit [Ralstonia eutropha JMP134] Length = 337 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 18/162 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HALL G+QG GK L +A G + ++P P C C F + +H Sbjct: 19 RLPHALLIHGQQGTGKRDLALHFAQGLLCESPRPDGQPCGQCAA--CHWFSQ--GNHP-- 72 Query: 91 DFLYLSYSLNPKTGKWRT-----------VITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 DF + G+ +I ++++R + + + + RV+++ P+ Sbjct: 73 DFTVVRPEALESGGEGEADDSGKKKAPSKIIRMEQVRALIDAVGVGTHRAGLRVVVVYPL 132 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 D + ANALLK+LEEPP +F+L++ IL TI SRC Sbjct: 133 DALQVEGANALLKTLEEPPSSTVFLLVTDRLDRILPTILSRC 174 >gi|312962441|ref|ZP_07776932.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] gi|311283368|gb|EFQ61958.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] Length = 684 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|126701173|ref|YP_001090070.1| putative DNA polymerase III subunit delta' [Clostridium difficile 630] gi|254977173|ref|ZP_05273645.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-66c26] gi|255094503|ref|ZP_05323981.1| putative DNA polymerase III, delta' subunit [Clostridium difficile CIP 107932] gi|255102759|ref|ZP_05331736.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-63q42] gi|255308580|ref|ZP_05352751.1| putative DNA polymerase III, delta' subunit [Clostridium difficile ATCC 43255] gi|255316254|ref|ZP_05357837.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-76w55] gi|255518915|ref|ZP_05386591.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-97b34] gi|255652094|ref|ZP_05398996.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-37x79] gi|260685067|ref|YP_003216352.1| putative DNA polymerase III subunit delta [Clostridium difficile CD196] gi|260688725|ref|YP_003219859.1| putative DNA polymerase III subunit delta [Clostridium difficile R20291] gi|306521828|ref|ZP_07408175.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-32g58] gi|115252610|emb|CAJ70453.1| DNA polymerase III, delta prime subunit [Clostridium difficile] gi|260211230|emb|CBA66746.1| putative DNA polymerase III, delta' subunit [Clostridium difficile CD196] gi|260214742|emb|CBE07428.1| putative DNA polymerase III, delta' subunit [Clostridium difficile R20291] Length = 311 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 35/220 (15%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G + +K+L+ ++++A +FEG GIGK + +L + +P Sbjct: 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSP 60 Query: 69 -VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + PD S I + +IR ++ + + + Sbjct: 61 DYVLIKPDGNS-------------------------------IKIAQIRNLQSDIVIRPH 89 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 Y ++ +I+ + M A NALLK+LEEPP + IL+++ ++L TI+SRC IKF+ Sbjct: 90 KDY-KIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFS 148 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + +L + L I + + + I + GS+ A+ + Sbjct: 149 PIPIEDLKRYLINTGI--EEERAQLLAIFSRGSIENALNL 186 >gi|301023021|ref|ZP_07186831.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 196-1] gi|581255|emb|CAA28175.1| alternate dnaZX protein (AA 1-620) [Escherichia coli] gi|299880984|gb|EFI89195.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 196-1] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|149375203|ref|ZP_01892975.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola DG893] gi|149360567|gb|EDM49019.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola DG893] Length = 654 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L + R+HHA LF G +G+GK T+G A + Sbjct: 17 VLARKWRPRTFEDMVGQEHVLQALIHALDNQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 76 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + +TG VD++R + Sbjct: 77 ETGVTATPCGTCS------SCQEIQEGRFVDLIEIDAAS--RTG-------VDDMRELTD 121 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 122 NVQYSPTRGRFKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 181 Query: 181 CLSIKFNSLSENNL 194 CL ++ ++ Sbjct: 182 CLQFNLKRMTPEHI 195 >gi|330998903|ref|ZP_08322630.1| DNA polymerase III, subunit gamma and tau [Parasutterella excrementihominis YIT 11859] gi|329576117|gb|EGG57636.1| DNA polymerase III, subunit gamma and tau [Parasutterella excrementihominis YIT 11859] Length = 693 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 24/184 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPD----FSKA 67 L G + + + L+ R+HHA LF G +G+GK T+ R L PD + Sbjct: 18 LLGQDHVVRALTHALTENRLHHAYLFTGTRGVGKTTIS-RILAKCLNCVGPDGKGGITAE 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSLTA 126 P +C A A+ + ++ Y + R + V + R +Y Sbjct: 77 PCGVCE-----------ACRAIDEDRFVDY-IEMDAASTRGIDDMVSLLERAKYV----P 120 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V MID V + A NA+LK+LEEPP+ V FIL + + T+ SRCL Sbjct: 121 TNARFKVYMIDEVHQLTSAAFNAMLKTLEEPPEYVKFILATTDPQKVPVTVLSRCLQFNL 180 Query: 187 NSLS 190 SLS Sbjct: 181 KSLS 184 >gi|255692724|ref|ZP_05416399.1| putative DNA polymerase III, delta prime subunit [Bacteroides finegoldii DSM 17565] gi|260621559|gb|EEX44430.1| putative DNA polymerase III, delta prime subunit [Bacteroides finegoldii DSM 17565] Length = 375 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 36/250 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E++++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEVKQRLIQEVNEGRIPHAQLICGPEGVGKIPLAIAYARYISCSNRSETDACGVCP 65 Query: 59 -------LQNPDFSKA-PVRMCNPDP----CSPFVKQMASHALHD-FLYLSYSLNPKTGK 105 L +PD P+ P C+ F+ Q L + L++ LN + Sbjct: 66 SCVKFNKLVHPDVHFVFPIVNKAKSPKVSVCADFLPQWREQLLTSPYFNLNHWLNNIGAE 125 Query: 106 WRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + I +E I LSL ++ G +++ ++ + ++ AN LLK LEEPP++ +F+ Sbjct: 126 NKQAQIFANESDEILKKLSLKSSEGGFKITIVWLPEKLHPVCANKLLKLLEEPPERTIFL 185 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--AYGSV 221 L+S IL TI+SR + + E ++ + L+ + I DS + IA A G+ Sbjct: 186 LVSEKPDMILPTIQSRTQRMNVRKIDEASIDRVLQTKYSIQPADS----LSIAHLANGNF 241 Query: 222 ARAIKILHYD 231 +A++ +H + Sbjct: 242 IKALETIHLN 251 >gi|149007189|ref|ZP_01830853.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP18-BS74] gi|147761227|gb|EDK68194.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP18-BS74] Length = 529 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 23/213 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP-- 79 K L Q ++ HA LF G +G GK ++ +A + P+ +PC+ Sbjct: 3 KTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFA-KAMNCPN-------QVGGEPCNNCY 54 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + + +L D + + + N VDEIR IR + + ++V +ID V Sbjct: 55 ICQAVTDGSLEDVIEMDAASNNG---------VDEIREIRDKSTYAPSLARYKVYIIDEV 105 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK--- 196 ++ A NALLK+LEEP Q V+FIL + I +TI SR +F S+ ++ + Sbjct: 106 HMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIKEHIH 165 Query: 197 -ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 LE+ I + + A G + A+ IL Sbjct: 166 YILEKENISSEPEAVEIIARRAEGGMRDALSIL 198 >gi|254247998|ref|ZP_04941319.1| ATPase [Burkholderia cenocepacia PC184] gi|124872774|gb|EAY64490.1| ATPase [Burkholderia cenocepacia PC184] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCESPQPNGEPCGTCAACNWFSQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIISRC 183 >gi|253989190|ref|YP_003040546.1| DNA polymerase III subunit delta' [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780640|emb|CAQ83802.1| dna-directed dna polymerase iii delta' chain [Photorhabdus asymbiotica] Length = 327 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 14/152 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR HHALL G G L + + ++ QN K ++ C C + M + Sbjct: 21 GRGHHALLLHANAGTGADVLIYGLSRWLMCQN----KQEMKSCGK--CHS-CRLMMAETH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ + ++P+ GK T I V+ +R+I L + G +++ + +G+ AANA Sbjct: 74 PDW----HIMSPEKGK--TSIGVEMVRQITETLYRRSQQGGVKIVWLPSAEGLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+ F+L ++L+T+RSRC Sbjct: 128 LLKTLEEPPECTYFLLECQQPTSLLATLRSRC 159 >gi|261345764|ref|ZP_05973408.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541] gi|282566253|gb|EFB71788.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541] Length = 648 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ENGITATPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSK-RDFVKIAAYGSVARAIKI 227 + TI SRCL +L + + + LE + + + D++ R + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFHLKALDVDQISEQLELILNAENIEHDTRGRQLIARAADGSLRDALSL 220 >gi|206560327|ref|YP_002231091.1| DNA polymerase III subunit delta' [Burkholderia cenocepacia J2315] gi|198036368|emb|CAR52264.1| putative DNA polymerase [Burkholderia cenocepacia J2315] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCESPQPNGEPCGACAACNWFSQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPPGVVFLLVSARIDRLLPTIISRC 183 >gi|157165121|ref|YP_001467001.1| DNA polymerase III subunits gamma and tau [Campylobacter concisus 13826] gi|112800927|gb|EAT98271.1| DNA polymerase III subunit tau [Campylobacter concisus 13826] Length = 554 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 18/214 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G E + K L+ R+ HA LF G +G GK + +A ++ + Sbjct: 8 YRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALVCEKGPT 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P +C C MA+ + H D + + + + K +D+IR + Sbjct: 68 SRPCEVCAQ--CV-----MANESRHMDIIEMDAASHRK---------IDDIRELIEQTKY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++ +ID V + + A NALLK+LEEPP V FIL + + +T+ SR Sbjct: 112 APTAARYKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHF 171 Query: 185 KFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAA 217 +F +S + K LE L G +R+ ++I A Sbjct: 172 RFKQISRYEIVKHLEFILSKEGVSYEREALEILA 205 >gi|194246446|ref|YP_002004085.1| DNA polymerase III [Candidatus Phytoplasma mali] gi|193806803|emb|CAP18230.1| DNA polymerase III [Candidatus Phytoplasma mali] Length = 580 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 36/253 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + + G + I + L ++ H LF G +G GK TL F + L N Sbjct: 8 RKYRPKFFKNVVGQKIIIQTLRNAIIYKKLSHCYLFSGNKGTGKTTLAKIFSKTINCLNN 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL---SYSLNPKTGKWRTVITVDEIRRI 118 D C + C+ KQ + D + + SY+ V+EIR + Sbjct: 68 KDGD--CCGYC--EACNIIDKQNS-----DIIEIDGASYN------------GVEEIRDL 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++ N +++ +ID V + NA NALLK+LEEPP+ V+FI + S I TI Sbjct: 107 KNKINYKTNFLKYKIYIIDEVHVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQ---LKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCD 233 SR ++ + ++ + L + L+ + D K KIA Y GS+ A+ +L D Sbjct: 167 SRTQHFHLLNIQKQHIIEKLTEIVDLEKISID-KEALEKIAFYSQGSLRDALNLL----D 221 Query: 234 KIISSYIDLIHIP 246 +I S DLI + Sbjct: 222 QISSYETDLITVT 234 >gi|169825651|ref|YP_001695809.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] gi|168990139|gb|ACA37679.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] Length = 578 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G +++ L + + HA LF G +G GK + +A + S+ P C Sbjct: 1 MSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHAPSEEPCNECA 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C SH D + + N + V+EIR I + + ++V Sbjct: 61 T--CLSITD--GSHP--DVIEFDAASNSR---------VEEIRDIIEKVRFAPASSRYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ +A NALLK+LEEPP +FIL + + +TI SRC F LS N+ Sbjct: 106 YIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTND 165 Query: 194 LYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + LE +++ + + +A G + A+ +L D+++S Sbjct: 166 IIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLL----DQVVS 209 >gi|159897320|ref|YP_001543567.1| DNA polymerase III subunit delta' [Herpetosiphon aurantiacus ATCC 23779] gi|159890359|gb|ABX03439.1| DNA polymerase III, delta prime subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 340 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 21/217 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV---LQNPDFSKAPVR 70 + G+E + L HA L G IGKATL R A + N D R Sbjct: 6 IIGNEWAVELLRLAIARNAASHAYLLTGLPNIGKATLALRMAQALNCEANNGDVC-GNCR 64 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKW----RTVITVDEIRRIRYFLSLTA 126 C K++A D + + K +T + +D +R + ++L Sbjct: 65 AC---------KRIAKGNFPDVRIVGLAEQAAQQKASESVKTRLGIDTVREWQADIALRP 115 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G RV ++ + M AANALLK+LEEPP IL+++++ +L TI SRC +K Sbjct: 116 YEGRRRVFIMHDAETMTEQAANALLKTLEEPPPFATLILVANSAGDLLPTITSRCHVLKL 175 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 + + +AL I W D I A S R Sbjct: 176 RPVPRQQVTQAL----IEHWQIAPDDAAIVAAWSAGR 208 >gi|78066661|ref|YP_369430.1| DNA polymerase III subunit delta' [Burkholderia sp. 383] gi|77967406|gb|ABB08786.1| DNA polymerase III, delta prime subunit [Burkholderia sp. 383] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCESPQPNGEPCGTCAACTWFSQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPSGVVFLLVSARIDRLLPTIISRC 183 >gi|167586966|ref|ZP_02379354.1| DNA polymerase III subunit delta' [Burkholderia ubonensis Bu] Length = 215 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 19/164 (11%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVK----------- 82 HALL G+ GIGK A G + + P + P C C+ FV+ Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCETPQANGEPCGACAA--CTWFVQGNHPDYRIVLP 79 Query: 83 -QMASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMID 137 +A A + GK I ++++R + F + ++ G RV+++ Sbjct: 80 EALAGEAPGAVDDARPADADDGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLY 139 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 P + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 140 PAEALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIISRC 183 >gi|94987358|ref|YP_595291.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis PHE/MN1-00] gi|94731607|emb|CAJ54970.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis PHE/MN1-00] Length = 574 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 25/230 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + + G E ++K LS+ ++ A L G +G+GK T+ F A + Q P Sbjct: 10 YRPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAKALNCQQAP- 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C + C K +H D + + + N VD+ RR+R + Sbjct: 69 -TAEPCNTC--EQCKRITK-----GIHVDVVEIDGASNRG---------VDDARRLRESI 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID + R + NALLK+LEEPP F+ + TI SRC Sbjct: 112 AYAPMEGRYKVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQ 171 Query: 183 SIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L++ NL L+Q I D+ + A GS+ ++ +L Sbjct: 172 HFVLKPLTKEELIYNLIHVLKQENICYEDNAIQLIARRASGSIRDSMSLL 221 >gi|320197053|gb|EFW71672.1| DNA polymerase III subunits gamma and tau [Escherichia coli WV_060327] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|238651109|ref|YP_002916967.1| DNA polymerase III subunits gamma and tau [Rickettsia peacockii str. Rustic] gi|238625207|gb|ACR47913.1| DNA polymerase III subunits gamma and tau [Rickettsia peacockii str. Rustic] Length = 509 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLTGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 232 >gi|332094159|gb|EGI99210.1| DNA polymerase III, subunits gamma and tau [Shigella boydii 5216-82] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|325270815|ref|ZP_08137405.1| DNA polymerase III, delta prime subunit [Prevotella multiformis DSM 16608] gi|324986826|gb|EGC18819.1| DNA polymerase III, delta prime subunit [Prevotella multiformis DSM 16608] Length = 379 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 33/247 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-------------- 59 + G + + L Q R+ HALLF G +G GK L + ++L Sbjct: 6 VIGQDAVSSRLVQMVKEDRLPHALLFCGPEGTGKMALAMAFGCYLLAGDEAGDTVPTSVS 65 Query: 60 ---------QNPD--FS----KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKT 103 ++PD FS K P P S F K+ + + + + Sbjct: 66 NARAMLRQWEHPDLHFSYPTIKLPGMSSEHQPVSSDFAKEWHALIMQGAYFTMNQWMKQM 125 Query: 104 G--KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 G + +IT E + L+L ++ G ++V +I + MN +AN LLK LEEPPQ Sbjct: 126 GATTQQAIITGAESDELARVLALKSSQGGYKVAIIWRPERMNLTSANKLLKLLEEPPQGT 185 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 +F+++S +L TI SR I + + + +AL + + D+ +I A+GS Sbjct: 186 VFLMVSEEPEKLLETIVSRTQRIDVKRIDDEAVEQALIARRGIDADAAHRIARI-AHGSW 244 Query: 222 ARAIKIL 228 +A++ L Sbjct: 245 LKALESL 251 >gi|320181087|gb|EFW56007.1| DNA polymerase III subunits gamma and tau [Shigella boydii ATCC 9905] Length = 620 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|303256850|ref|ZP_07342864.1| DNA polymerase III, subunits gamma and tau [Burkholderiales bacterium 1_1_47] gi|302860341|gb|EFL83418.1| DNA polymerase III, subunits gamma and tau [Burkholderiales bacterium 1_1_47] Length = 693 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 24/184 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPD----FSKA 67 L G + + + L+ R+HHA LF G +G+GK T+ R L PD + Sbjct: 18 LLGQDHVVRALTHALTENRLHHAYLFTGTRGVGKTTIS-RILAKCLNCVGPDGKGGITAE 76 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSLTA 126 P +C A A+ + ++ Y + R + V + R +Y Sbjct: 77 PCGVCE-----------ACRAIDEDRFVDY-IEMDAASTRGIDDMVSLLERAKYV----P 120 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V MID V + A NA+LK+LEEPP+ V FIL + + T+ SRCL Sbjct: 121 TNARFKVYMIDEVHQLTSAAFNAMLKTLEEPPEYVKFILATTDPQKVPVTVLSRCLQFNL 180 Query: 187 NSLS 190 SLS Sbjct: 181 KSLS 184 >gi|94310765|ref|YP_583975.1| DNA polymerase III subunit delta' [Cupriavidus metallidurans CH34] gi|93354617|gb|ABF08706.1| DNA polymerase III, delta prime subunit [Cupriavidus metallidurans CH34] Length = 337 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 16/185 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFSKAPVRMCNP--------DPCSPF 80 R+ HALL G+QGIGK L +A +L PD P C+ P Sbjct: 19 RLPHALLLHGQQGIGKRDLALHFAQGLLCESALPDGQ--PCNTCSACHWFGQGNHPDFTV 76 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 V+ A A K +I ++++R + + + + RV+++ P+D Sbjct: 77 VRPEALEAGAGEAEGDGESGSKKKAPSKIIRMEQVRALIEAVGVGTHRAGLRVVVVYPLD 136 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 + ANALLK+LEEPP +F+L++ +L TI SRC S++ AL+ Sbjct: 137 ALQTEGANALLKTLEEPPPSTVFLLVTDRIDRVLPTILSRCRQF---SMTRPTSADALDW 193 Query: 201 LKIMG 205 L+ G Sbjct: 194 LRGQG 198 >gi|238915993|ref|YP_002929510.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238871353|gb|ACR71063.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 331 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 15/217 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++G+E I++ L G++ HA + G G GK + +A LQ P +C+ Sbjct: 7 IYGYETIKEHLQSAISMGKVSHAYVISGGLGSGKKLIASTFA-QTLQCEAGGVEPCGVCH 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 C Q A D +++ + K G I VD+IR ++ + + + ++ Sbjct: 66 S--CV----QAAGRNQPDIIWVGHE---KPGS----IGVDDIRDQLVSDMQIKPYSSPYK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID D + A NA+LK++EEPP + IL+++ L TI SRC+ + L ++ Sbjct: 113 IYIIDEADKLTVAAQNAMLKTIEEPPAYGIVILLANNPDVFLQTILSRCVVLDLKPLKDD 172 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + K L+ D + F A G + RA+ ++ Sbjct: 173 IVIKYLKDHYDNISDYECKFAARFAAGRIGRAMTMVE 209 >gi|254786716|ref|YP_003074145.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae T7901] gi|237683496|gb|ACR10760.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae T7901] Length = 672 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPANFREMVGQEHVLRALINALDHNRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P C ++A D + + + K V++ R + Sbjct: 65 DSGVTSTPCGECT------SCVEIAEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL ++S +L LE+ I ++ + AA GS+ A+ + Sbjct: 170 CLQFNLKNMSPERIVGHLQNVLEKEAIPSDNAALWSLARAADGSMRDALSL 220 >gi|158319121|ref|YP_001511628.1| DNA polymerase III, delta prime subunit [Alkaliphilus oremlandii OhILAs] gi|158139320|gb|ABW17632.1| DNA polymerase III, delta prime subunit [Alkaliphilus oremlandii OhILAs] Length = 329 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 21/219 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G E K L + ++ HA LFEG +G+GK L + A ++ D SK P Sbjct: 4 ESIVGQEKAIKNLEKAVLENQVAHAYLFEGAEGLGKKALALKLAAALV-CFDHSKRPCGK 62 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNP--KTGKWRTVITVDEIRRIRYFLSLTANTG 129 CN C L ++ +P K + I VDE+R + + L G Sbjct: 63 CNS--C---------------LKINSGNHPGIKIIEEAGTIKVDEVRELIKDIQLKPYEG 105 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V +I D MN NALLK+LEEPP IL++ ++L TI SRC SIK + + Sbjct: 106 SHKVYIICDADKMNIQGQNALLKTLEEPPAYATLILLTTKKSSLLPTIISRCQSIKLSPV 165 Query: 190 SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 S + + L Q K M D + ++ G + +A+ +L Sbjct: 166 SSDRIKSYLIQEKDMDPDRAQMLAALSE-GIIGKALDLL 203 >gi|330432966|gb|AEC18025.1| DNA polymerase III subunits gamma and tau [Gallibacterium anatis UMN179] Length = 724 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ + R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPDQFSDVVGQEHIIAALTNALNNQRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C + + D + + + K R ++ + + +R Sbjct: 65 EKGITATPCGEC--ENC----RAIKEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVR- 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 118 --------GRFKIYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 C+ +L + +L K L++ +I + AA GSV A+ + Sbjct: 170 CIQFHLKALDADVIAAHLQKLLQKEQIDYQPQALMKIARAAQGSVRDALSL 220 >gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 607 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 24/198 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I L G++ HA LF G +G GK + +A + Sbjct: 13 RTFDDV-----VGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ + + A+ D + + + N +VDEIR + Sbjct: 63 ---NCLNLQEGEPCNECSNCLDADQGAMPDIVEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE 199 F S + + +E Sbjct: 171 QRYNFKRFSNEAMVQRME 188 >gi|323170566|gb|EFZ56216.1| DNA polymerase III, subunits gamma and tau [Escherichia coli LT-68] Length = 618 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+HHA LF G +G+GK ++ A + + P +C D C +++ Sbjct: 12 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNC----REIEQGRFV 65 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + K V++ R + + G ++V +ID V ++R++ NAL Sbjct: 66 DLIEIDAASRTK---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 116 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LK+LEEPP+ V F+L + + TI SRCL +L + LE + Sbjct: 117 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 167 >gi|325675217|ref|ZP_08154902.1| DNA-directed DNA polymerase III subunit delta' [Rhodococcus equi ATCC 33707] gi|325553923|gb|EGD23600.1| DNA-directed DNA polymerase III subunit delta' [Rhodococcus equi ATCC 33707] Length = 395 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 18/198 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 RM H+ LF G G G++ +A LQ + V C C MA Sbjct: 33 RMTHSWLFTGPPGSGRSVAAVCFAA-ALQ---CTSEGVPGCGE--CQACTTTMAGTHGDV 86 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L+ I+V E+R I S +TG W+V++++ D + AANALL Sbjct: 87 RRVVPEGLS---------ISVSEMRGIVQTASRRPSTGRWQVVVVEDADRLTEGAANALL 137 Query: 152 KSLEEPPQKVLFILISHA-SPTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEPP++ +F+L + + P +S T+RSRC I + S + + + L + + ++ Sbjct: 138 KVVEEPPERTVFLLCAPSVDPQDISVTLRSRCRHIPLVTPSVDAIAQVLRERDHLDAETS 197 Query: 210 RDFVKIAAYGSVARAIKI 227 D+ G V RA ++ Sbjct: 198 -DWAASICGGHVGRARRL 214 >gi|323491964|ref|ZP_08097133.1| DNA polymerase III subunit delta' [Vibrio brasiliensis LMG 20546] gi|323313822|gb|EGA66917.1| DNA polymerase III subunit delta' [Vibrio brasiliensis LMG 20546] Length = 320 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 12/119 (10%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K GK TV++IR+ ++ R+ +I PV+ MN +AANALLK+LEEP Sbjct: 83 KEGK---TSTVEQIRQCNRLAQESSQLSGSRLFVIYPVEAMNESAANALLKTLEEPSASC 139 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LF+L++H S ++L TI SRC A E + W S + + AY + Sbjct: 140 LFLLVTHRSHSLLPTITSRCQQWHLT---------APESQSVATWLSAQSVGDVPAYAA 189 >gi|302872503|ref|YP_003841139.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor obsidiansis OB47] gi|302575362|gb|ADL43153.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor obsidiansis OB47] Length = 534 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + + I K L ++ HA +F G +G GK T Sbjct: 7 RKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTA----------KI 56 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 S+A V NP +PC+ + + D L + + N +V+++R+I Sbjct: 57 MSRA-VNCLNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNT---------SVNDVRQI 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK++EEPP LFIL + + +TI Sbjct: 107 RDEVRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTIEEPPSHALFILATTDIQKVPATIL 166 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH 229 SRC F +S ++Y+ L+++ M S D + A G++ A+ IL Sbjct: 167 SRCQRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILE 221 >gi|225026352|ref|ZP_03715544.1| hypothetical protein EUBHAL_00594 [Eubacterium hallii DSM 3353] gi|224956362|gb|EEG37571.1| hypothetical protein EUBHAL_00594 [Eubacterium hallii DSM 3353] Length = 340 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G+E I++ ++ HA + EG++G GK L ++ + + V Sbjct: 5 NEILGNERIKEHFITAVHHKKISHAYIMEGDKGSGKKMLAEAFSKILQCEGRETTGLVES 64 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 C C + QM H D +++S+ P VI+V EIR +I + + G Sbjct: 65 CGK--CESCI-QMEYHDHPDVIWVSHE-KP------NVISVGEIREQIVNTVEIMPYKGP 114 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +++ ++D + MN A NA+LK++EEPP+ + L++ L TI SRC+ Sbjct: 115 YKIYIVDEAEKMNAAAQNAILKTIEEPPEYAVIFLLTTNRGAFLDTILSRCI 166 >gi|15893259|ref|NP_360973.1| DNA polymerase III subunits gamma and tau [Rickettsia conorii str. Malish 7] gi|15620479|gb|AAL03874.1| DNA polymerase III gamma and tau chains [Rickettsia conorii str. Malish 7] Length = 509 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 232 >gi|329910240|ref|ZP_08275258.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546226|gb|EGF31264.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] Length = 346 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMC----------NPD--PC 77 R+ HA+L G GIGK +A +L + P +C +PD Sbjct: 21 ARLPHAILLHGNPGIGKTDFAEAFAASLLCEQPLDDGRACGICLSCGWFGQYAHPDYRRV 80 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRV 133 P V A A + + KT K V I +D+IR + F++++ + RV Sbjct: 81 RPEVLDGADAA-NSADDSDAGDDKKTAKASKVPSKEIRIDQIRALADFMNISTHRNGKRV 139 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++ P + +N +ANALLKSLEEPP +F+++S++ +L TI SRC + + Sbjct: 140 VLLYPAEALNTISANALLKSLEEPPPDTVFLMVSNSLDRLLPTILSRCRKLALPLPTTQV 199 Query: 194 LYKALEQLKIMGWD 207 LEQ ++ D Sbjct: 200 ALAWLEQQQVRDAD 213 >gi|225012533|ref|ZP_03702969.1| DNA polymerase III subunit delta' [Flavobacteria bacterium MS024-2A] gi|225003510|gb|EEG41484.1| DNA polymerase III subunit delta' [Flavobacteria bacterium MS024-2A] Length = 367 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 36/199 (18%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK--ATLGFRYA-------------- 55 + + G EDI+K L S ++ HA LF G G G +L F A Sbjct: 4 KNIIGQEDIKKQLEHLIDSNQVPHAQLFTGLSGYGGLPISLAFSLALLGISSECSSGKPL 63 Query: 56 GHVLQNPDFSKA-PVRMCNPDP---CSPFVKQMASHALHDFLYLSYSLNPKTGKW----- 106 G + +PDF PV + CS + + + +LS SL W Sbjct: 64 GEKIHHPDFHFVYPVVKRGTEKVAYCSDYSSEWTA-------FLSESLYGNYNDWFEAIV 116 Query: 107 ----RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 + +I V EI ++ + L + +G +V +I + MN+ A+N LK LEEPPQ Sbjct: 117 EGNKQGLIGVKEIEKLHQKMHLKSYSGGNKVCVIWGTERMNKVASNKFLKILEEPPQNTY 176 Query: 163 FILISHASPTILSTIRSRC 181 FILI+ +L T+ SRC Sbjct: 177 FILIAEDIEMLLPTLVSRC 195 >gi|306821443|ref|ZP_07455047.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550518|gb|EFM38505.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 538 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + L ++ HA +F G +G GK + +A + QN Sbjct: 7 RKYRPDNFENIIGQSQVTDVLKNQIKEDKISHAYVFSGTRGTGKTSTAKVFAKSLNCQNY 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C + + D + + + N +VD IR ++ + Sbjct: 67 SPESGPCNHC----------ESCKNDYVDTIEIDAASNN---------SVDNIRALKDNI 107 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 108 IYRPSFGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSRCQ 167 Query: 183 SIKFNSLS 190 +F +S Sbjct: 168 KFEFKKVS 175 >gi|330814122|ref|YP_004358361.1| DNA polymerase III delta prime subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487217|gb|AEA81622.1| DNA polymerase III delta prime subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 302 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY-AGHVLQNPDFSKAPV 69 N +L+ +E+ + L+ + +++F G+ G+GK T + A H+L F K Sbjct: 5 NNKLYFYENYFQSLNNLLTFKNLPQSIIFSGQGGLGKKTFLLHFFAFHLLN--SFEKKTY 62 Query: 70 RMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 F+ Q L + Y ++ + K K + I +D+IR + F S A+ Sbjct: 63 -------LKDFIINDQEILKRLRNNEYANFKIVEKKEK-NSSIQIDQIRELINFCSYKAS 114 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC--LSIK 185 R I+I ++ +N +A N+LLK LE+PP+ F LI + I TI SRC ++IK Sbjct: 115 LSSPRFILISNIEDLNSSATNSLLKLLEDPPKNTYFFLIRDSHAKIYETILSRCHKVNIK 174 Query: 186 FN-SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 N +S+ L K L + + R F G + I Sbjct: 175 MNKKISDELLTKLLRDFTLTSSITVRHFDAYDTPGMIVNKI 215 >gi|253688874|ref|YP_003018064.1| DNA polymerase III, delta prime subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755452|gb|ACT13528.1| DNA polymerase III, delta prime subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 336 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHA+L G+G +L + + ++ Q PD K+ CN M Sbjct: 18 YQAGRGHHAVLLHALPGMGDESLIYALSRWLICQRPDGMKSCGHCHSCN---------LM 68 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 + D+ + L+P+ GK + VD +R + + A G +VI + + + Sbjct: 69 TAGTHPDW----HVLSPEKGK--QSLGVDPVRDVVEKVYQHARQGGAKVIWLSAAEQLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 AANALLK+LEEPPQ F+ +L+T+RSRCL Sbjct: 123 AAANALLKTLEEPPQNTFFLFGCREPARLLATLRSRCL 160 >gi|34581073|ref|ZP_00142553.1| DNA polymerase III gamma and tau chains [Rickettsia sibirica 246] gi|28262458|gb|EAA25962.1| DNA polymerase III gamma and tau chains [Rickettsia sibirica 246] Length = 509 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 232 >gi|330960239|gb|EGH60499.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. maculicola str. ES4326] Length = 717 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|206889990|ref|YP_002248231.1| DNA polymerase III, subunits gamma and tau [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741928|gb|ACI20985.1| DNA polymerase III, subunits gamma and tau [Thermodesulfovibrio yellowstonii DSM 11347] Length = 319 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 14/191 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 ++ E K L + ++ +ALLF G+ IGK + YA + ++ Sbjct: 4 NKIISQEKAIKLLKGTLRTKKIPNALLFLGDAYIGKTSTAIAYAKALNCLNSENEDSCDS 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C + LH + + + P+ + VITV+ IR + F+SL G + Sbjct: 64 C--DSC-----KKIEQRLHPDIKI---IAPE----KDVITVNTIREVEEFVSLKPLEGKY 109 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V++I MN AANA LK++EEPP ILI + + SRC + F LS Sbjct: 110 KVVIIKEAHKMNNAAANAFLKTVEEPPFMTTIILICENIHNLPEPLISRCFKVYFTPLSI 169 Query: 192 NNLYKALEQLK 202 + + K + ++ Sbjct: 170 DAIKKIIPDMQ 180 >gi|145634548|ref|ZP_01790257.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA] gi|229844385|ref|ZP_04464525.1| DNA polymerase III subunit delta' [Haemophilus influenzae 6P18H1] gi|145268093|gb|EDK08088.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA] gi|229812634|gb|EEP48323.1| DNA polymerase III subunit delta' [Haemophilus influenzae 6P18H1] Length = 327 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQVDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ S ++ Q SH D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCH----SCYLMQAHSHP--DY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 162 NLSVPNEQTAVDWLK 176 >gi|134295920|ref|YP_001119655.1| DNA polymerase III subunit delta' [Burkholderia vietnamiensis G4] gi|134139077|gb|ABO54820.1| DNA polymerase III, delta prime subunit [Burkholderia vietnamiensis G4] Length = 342 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAKGFLCESPQPDGQPCGACAACTWFAQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIISRC 183 >gi|327403631|ref|YP_004344469.1| putative DNA polymerase III subunit delta [Fluviicola taffensis DSM 16823] gi|327319139|gb|AEA43631.1| putative DNA polymerase III, delta subunit [Fluviicola taffensis DSM 16823] Length = 371 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 29/211 (13%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----------------- 58 G E+++ L + G++ HA LF G+ G L + ++ Sbjct: 8 GQEELKSHLIEEVKGGKISHAQLFAGKSGHATLPLALAFIQYIFCEDKGEKDSCGKCASC 67 Query: 59 -----LQNPD--FSKAPVRMCN--PDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRT 108 LQ+PD FS V+ + +P P + Q+ + D + + ++ K K Sbjct: 68 KKVDDLQHPDLHFSFPTVQTLSKITNPLLPLWRTQIKEQPIFDLYHWTKRIDDKERK--P 125 Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I +E I L+L + G ++V++I + MN AN LLK LEEPP K LF+L++ Sbjct: 126 IIGTEESLEIVKKLALKSYEGGYKVMLIWMAEEMNPTCANKLLKILEEPPAKTLFLLVTD 185 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +L TIRSR ++ +S + + + +E Sbjct: 186 DPDKLLITIRSRTQILRVSSYPMDVIQQVVE 216 >gi|291277272|ref|YP_003517044.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae 12198] gi|290964466|emb|CBG40316.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae 12198] Length = 585 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 19/220 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G E + K LS R+ HA LF G +G GK T R LQ Sbjct: 9 YRPTTFADLIGQESVAKTLSLALEKNRIAHAYLFSGLRGSGK-TSSARIFARALQ---CQ 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 KAP++ DPC+ + S F + ++ + + +D+IR + + Sbjct: 65 KAPIK----DPCNTCDNCIQSLEGRHFDIIE--MDAASSRR-----IDDIRNLIEQTKYS 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR + Sbjct: 114 PSFGRYKIFIIDEVHMLTKEAFNALLKTLEEPPNYVKFILATTDPLKLPATILSRTQHFR 173 Query: 186 FNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 F + +LY LE+ +I + + + GS+ Sbjct: 174 FKKIPHKLILQHLYNILEKEEISYEKEAIEMIARSGSGSL 213 >gi|145632721|ref|ZP_01788455.1| DNA polymerase III subunit delta' [Haemophilus influenzae 3655] gi|144986916|gb|EDJ93468.1| DNA polymerase III subunit delta' [Haemophilus influenzae 3655] Length = 334 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 28/197 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ Sbjct: 15 LTPIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQVD 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K P C+ S ++ Q SH D+ + L+P GK I VD++R I ++ Sbjct: 64 K-PCGQCH----SCYLMQAHSHP--DY----HELSPIDGK---DIGVDQVRDINEMVAQH 109 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 110 AQQNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---Q 166 Query: 186 FNSLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 167 VWNLSVPNEQTAVDWLK 183 >gi|91788139|ref|YP_549091.1| DNA polymerase III subunits gamma and tau [Polaromonas sp. JS666] gi|91697364|gb|ABE44193.1| DNA polymerase III, subunits gamma and tau [Polaromonas sp. JS666] Length = 610 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA----- 55 ++ R + P + G + + L + R+HHA LF G +G+GK T+ A Sbjct: 5 VLARKYRPRNFSEMVGQSHVVQALGNALSTRRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 56 GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 V D + P +C + S D+ L + N VDEI Sbjct: 65 TGVDGQGDITAEPCGVCQ------ACIDIDSGRFVDYTELDAASN---------RGVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + A NA+LK+LEEPP+ + F+L + + + Sbjct: 110 AQLLEQAVYKPVVGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPA 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L Q+ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLAQV 195 >gi|29349228|ref|NP_812731.1| putative DNA polymerase III, delta subunit [Bacteroides thetaiotaomicron VPI-5482] gi|29341136|gb|AAO78925.1| putative DNA polymerase III, delta subunit [Bacteroides thetaiotaomicron VPI-5482] Length = 374 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 45/254 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L Q GR+ HA L G +G+GK L YA ++ Sbjct: 6 VIGQEEIKQRLIQEVSEGRIPHAQLICGPEGVGKMPLAIAYARYISCTNRGETDACGVCP 65 Query: 59 -------LQNPDF---------SKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLN 100 L +PD SK +C+ PFV + L+ +L + N Sbjct: 66 SCVKFNKLVHPDVHFVFPIVKSSKGKREVCDDYIADWRPFVLKNPYFNLNHWLREMDAEN 125 Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 + +I E I LSL ++ G +++ ++ + M AN LLK LEEPP+K Sbjct: 126 AQA-----IIYAKESDEILKKLSLKSSEGGFKITILWLPEKMYPVCANKLLKLLEEPPEK 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIA--A 217 +F+L+S A IL TI SR + + E + + L+ + I DS + IA A Sbjct: 181 TIFLLVSEAPEMILPTILSRTQRMNVRKIDEPAIDRVLQSKYGIQPADS----LSIAHLA 236 Query: 218 YGSVARAIKILHYD 231 G+ +A++ +H + Sbjct: 237 NGNFIKALETIHLN 250 >gi|312134420|ref|YP_004001758.1| DNA-directed DNA polymerase [Caldicellulosiruptor owensensis OL] gi|311774471|gb|ADQ03958.1| DNA-directed DNA polymerase [Caldicellulosiruptor owensensis OL] Length = 320 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 19/179 (10%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G+GK L ++ +L K +C C F +H DF Sbjct: 25 HAYIFEGEKGLGKKLLAMTFSKQLLCE---KKIACDVCKS--CRLF--DALTHP--DFKI 75 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + K + R I+VD IR I +S ++ +I + M+ +A NALLK+L Sbjct: 76 I------KRDEDRKEISVDAIREITKDISRGPIFANKKIYIIQEAEEMSTSAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 EEPP+ LFIL + +L T+ SR L + F S + + E LK G + RD+V Sbjct: 130 EEPPEYALFILTCNNLERLLPTVISRSLVLSFKRYSASEIS---EILKSHGLEP-RDYV 184 >gi|71734194|ref|YP_274019.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554747|gb|AAZ33958.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] Length = 737 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|53803740|ref|YP_114427.1| DNA polymerase III, delta prime subunit [Methylococcus capsulatus str. Bath] gi|53757501|gb|AAU91792.1| DNA polymerase III, delta prime subunit [Methylococcus capsulatus str. Bath] Length = 335 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 22/281 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + L Y +GR+ LL G G+GK L +A +L ++ C+ C V Sbjct: 16 RRLRAYLEAGRLPQGLLISGAAGVGKGVLADDFARRLLCASPPAEGACGTCHA--CRLVV 73 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H D+L++ + GK ITV+ +RR+ LSL G RV++I P Sbjct: 74 A--GNHP--DYLHIEPE---EAGK---RITVELVRRLIDRLSLKPQYGASRVVVIRPAHA 123 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 MN AAN+LLK+LEEP LF+LIS + +T+ SRC + L E +AL L Sbjct: 124 MNMAAANSLLKTLEEPDPHTLFLLISERPAQLPATVLSRCQRLDVR-LPERE--EALRWL 180 Query: 202 KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI---DLIHIPRQEYALQKMQQI 258 + G + + + A G+ RA++ LH D + D + + R E + Sbjct: 181 RGQGVGEEAEALLAMAGGAPVRAVE-LHGGGDLAQRRRMLFDDWVAVLRDE---SDPLAV 236 Query: 259 ADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 A+ +D + +L +I I S+ A++ +L AD Sbjct: 237 AERWAKEDGETVLIWLRGWIADLIRISSTEASVPLRLANAD 277 >gi|258509255|ref|YP_003172006.1| DNA polymerase III delta subunit [Lactobacillus rhamnosus GG] gi|257149182|emb|CAR88155.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus GG] gi|259650537|dbj|BAI42699.1| DNA polymerase III delta' subunit [Lactobacillus rhamnosus GG] Length = 325 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 17/200 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 25 QLAQSYLFVGPKGAGKLALAEWIALRLFCQHVQDGAPCGEC------PECERILNHNHPD 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L S I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 79 VMMLKTSTQS--------IKVDDIRNLKQEMSKTGVEGNQRVFIVEDADKMTAGAANSLL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + A +L TI SR I F S N + LE+ G +S+ Sbjct: 131 KFFEEPVPGMTVILTATAKNQLLPTILSRAQVITFQSPDRNAVITKLEE---GGANSQLA 187 Query: 212 FVKIAAYGSVARAIKILHYD 231 V G+V+ A ++L D Sbjct: 188 RVAGRLTGNVSEAQELLASD 207 >gi|17232197|ref|NP_488745.1| DNA polymerase III subunit delta' [Nostoc sp. PCC 7120] gi|17133842|dbj|BAB76404.1| all4705 [Nostoc sp. PCC 7120] Length = 320 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 21/284 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKA-------TLGFR 53 M + F P L G + + L+Q R+ A LF G G+G++ L F Sbjct: 1 MTNNPFAP-----LVGQKQAIELLTQAVKQNRVAPAYLFAGPDGVGRSLAARCFVELLFA 55 Query: 54 YAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P + + +PD +V+ + F + K +I ++ Sbjct: 56 SVVEARLLPSLQQRLRQGNHPDLL--WVQPTYQYQGQRFTAAQAAEKKLKRKAPPLIRLE 113 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR I FL V++++ M AANALLK+LEEP Q + ILI+ + ++ Sbjct: 114 QIREITEFLGRPPLEAPRNVVVLEEAQTMAEPAANALLKTLEEPGQATI-ILITPSPESV 172 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L T+ SRC I F SL +L + L Q G + + S + I Y+ Sbjct: 173 LPTLVSRCQRIPFYSLDTKSLTQVLTQ---TGNQEVLQHPAVLSLASGSPGSAIASYEQL 229 Query: 234 KIISSYI--DLIHIPR-QEYALQKMQQIADELLSQDQKIAFDFL 274 +II + DL P+ Q +AL+ ++I +L ++ Q D+L Sbjct: 230 QIIPPDLLQDLTTAPKSQRHALELAKRIDKDLETEAQLWLVDYL 273 >gi|256848136|ref|ZP_05553580.1| DNA polymerase III, subunits gamma and tau [Lactobacillus coleohominis 101-4-CHN] gi|256715196|gb|EEU30173.1| DNA polymerase III, subunits gamma and tau [Lactobacillus coleohominis 101-4-CHN] Length = 570 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L + ++ HA LF G +G GK + +A + + Sbjct: 8 RVWRPQRFADVVGQQVITQTLKNAIITNQISHAYLFAGPRGTGKTSAAKIFAKAINCHHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + L+D + + + N V+EIR IR Sbjct: 68 KDGEPCNECE------ICQSITAGTLNDVIEIDAASNNG---------VEEIRDIRDKAK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 113 YAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTILSRVQR 172 Query: 184 IKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F+ +S + + L+Q K + + AA G + A+ IL Sbjct: 173 FDFHRISPQDTFDRMKYILDQKKFKYEEKALWVIANAAEGGMRDALSIL 221 >gi|229544838|ref|ZP_04433563.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX1322] gi|256854074|ref|ZP_05559439.1| DNA polymerase III [Enterococcus faecalis T8] gi|229310006|gb|EEN75993.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX1322] gi|256711017|gb|EEU26060.1| DNA polymerase III [Enterococcus faecalis T8] gi|315030401|gb|EFT42333.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4000] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|148825265|ref|YP_001290018.1| DNA polymerase III subunit delta' [Haemophilus influenzae PittEE] gi|229846541|ref|ZP_04466649.1| DNA polymerase III subunit delta' [Haemophilus influenzae 7P49H1] gi|148715425|gb|ABQ97635.1| DNA polymerase III subunit delta [Haemophilus influenzae PittEE] gi|229810634|gb|EEP46352.1| DNA polymerase III subunit delta' [Haemophilus influenzae 7P49H1] Length = 327 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 28/197 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ Sbjct: 8 LTPIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGD 56 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K P C+ M +H+ D+ + L+P GK I VD++R I ++ Sbjct: 57 K-PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQH 102 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +V+ + V+ + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 103 AQQNGNKVVYVQGVERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---Q 159 Query: 186 FNSLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 160 VWNLSVPNEQTAVDWLK 176 >gi|33152913|ref|NP_874266.1| DNA polymerase III subunit delta' [Haemophilus ducreyi 35000HP] gi|33149138|gb|AAP96655.1| DNA polymerase III delta' subunit [Haemophilus ducreyi 35000HP] Length = 328 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + +GR HHALLF+ + G+G L ++A +L + P + D C + Sbjct: 14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLL-----CQTPKQGHACDQCKSCL-- 66 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 + + H L++ S++ K I +++IR L A G V+ I + + Sbjct: 67 LLKNGNHPDLHILESIDGKD------IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLT 120 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + NALLK+LEEP KV F+L + IL TI SRC Sbjct: 121 AASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158 >gi|37521001|ref|NP_924378.1| DNA polymerase III subunit delta' [Gloeobacter violaceus PCC 7421] gi|35211997|dbj|BAC89373.1| DNA polymerase III delta prime subunit [Gloeobacter violaceus PCC 7421] Length = 308 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 22/212 (10%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP--CSPF 80 L + +GR+ A LF G QG+GKA +A +L++ + R +PD P Sbjct: 18 LLERAIVTGRIAPAYLFCGPQGVGKAMAARHFAARLLES-ALGRI-ERGNHPDLLWVEPT 75 Query: 81 VKQ-----MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 K+ + AL + L +L P+ + ++++R I FLS +VI+ Sbjct: 76 YKKGDKLLSRAEALAEGGNLPRAL-PQ-------VRLEQVRGINQFLSRPPLEAARQVIV 127 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+ + M AANALLK LEEP V F+LI+ ++ +L+T+RSRC + F L + Sbjct: 128 IEGAEAMGDGAANALLKILEEPGGAV-FVLIAPSAGGLLATVRSRCQKVPFCCLPHELVA 186 Query: 196 KALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L L S + + A GS RA+++ Sbjct: 187 QILAALG----KSVDERLLAMAQGSPGRALEL 214 >gi|229823583|ref|ZP_04449652.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271] gi|229787027|gb|EEP23141.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271] Length = 655 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I + L + ++ HA LF G +G GK + A V Sbjct: 8 RVWRPQSFDELVGQPLIAETLKNAVKNQQLSHAYLFTGPRGTGKTSAAKILAKAVNCPHQ 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + + L D + + + N G V+EIR +R + Sbjct: 68 TDGNPCNQCE------LCQAITAGQLSDVIEIDAASN--NG-------VEEIRDLRDKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V + A NALLK+LEEPP +VLFIL + I +TI SR Sbjct: 113 YAPSQATYKVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQR 172 Query: 184 IKFNSLSENNL 194 F +S+ +L Sbjct: 173 FDFGRISQADL 183 >gi|330986180|gb|EGH84283.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M301315] Length = 733 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|320323485|gb|EFW79570.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. B076] gi|320329472|gb|EFW85464.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. race 4] Length = 737 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYVPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|145640424|ref|ZP_01796008.1| DNA polymerase III subunit delta' [Haemophilus influenzae R3021] gi|145275010|gb|EDK14872.1| DNA polymerase III subunit delta' [Haemophilus influenzae 22.4-21] Length = 327 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRSNTYFLLQTDSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N AL+ LK Sbjct: 162 NLSVPNEQMALDWLK 176 >gi|144898666|emb|CAM75530.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ SGR+ HA + G +G+GK T R L Sbjct: 12 VLARKYRPTDFATLIGQDAMVRTLTNAIASGRLAHAFVLTGVRGVGKTTTA-RIIARALN 70 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P DPC + +A D L + + +TG V++IR Sbjct: 71 CIGPDGQGGPTI----DPCGQCEHCRAIAEDRHVDILEMDAA--SRTG-------VNDIR 117 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ A NALLK+LEEPP+ V FI + I T Sbjct: 118 EIIESVRYRPTSARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVT 177 Query: 177 IRSRC 181 + SRC Sbjct: 178 VLSRC 182 >gi|298486349|ref|ZP_07004411.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159077|gb|EFI00136.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 737 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|229552950|ref|ZP_04441675.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|258540438|ref|YP_003174937.1| DNA polymerase III subunit delta [Lactobacillus rhamnosus Lc 705] gi|229313694|gb|EEN79667.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|257152114|emb|CAR91086.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus Lc 705] Length = 325 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 17/200 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 25 QLAQSYLFVGPKGAGKLALAEWIALRLFCQHVQDGAPCGEC------PECERILNHNHPD 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L S I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 79 VMMLKTSTQS--------IKVDDIRNLKQEMSKTGVEGNQRVFIVEDADKMTAGAANSLL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + A +L TI SR I F S N + LE+ G +S+ Sbjct: 131 KFFEEPVPGMTVILTATAKNQLLPTILSRAQVITFQSPDRNAVITKLEE---GGANSQLA 187 Query: 212 FVKIAAYGSVARAIKILHYD 231 V G+V+ A ++L D Sbjct: 188 RVAGRLTGNVSEAQELLASD 207 >gi|254425086|ref|ZP_05038804.1| DNA polymerase III, delta' subunit domain protein [Synechococcus sp. PCC 7335] gi|196192575|gb|EDX87539.1| DNA polymerase III, delta' subunit domain protein [Synechococcus sp. PCC 7335] Length = 336 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 12/208 (5%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++D++ DP + L G E L + R+ LF G G GK+ +A +L Sbjct: 9 IVDKSVDPFAS--LIGQEQAITLLRRVVQLQRVAPGYLFVGPTGTGKSLAATGFAQLLLS 66 Query: 60 ----QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITV 112 Q+ + R D P + + LH L+ + + G R I + Sbjct: 67 SRLGQSASATAILARRIR-DRNHPDLLWIEPTYLHQGKLLTAAEAAEAGLKRKSPPRIRL 125 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 +IRRI FLS V++I+ + M AANALLK+LEEP Q L +L++ Sbjct: 126 PQIRRIARFLSRPPLESDRAVVIIEQAEKMAEGAANALLKTLEEPGQATL-VLLAPDQQA 184 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +LST+ SRC SI F L+ + + L Q Sbjct: 185 LLSTLVSRCQSIPFRRLNNEQMVQVLTQ 212 >gi|29377253|ref|NP_816407.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis V583] gi|227554263|ref|ZP_03984310.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis HH22] gi|229549105|ref|ZP_04437830.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis ATCC 29200] gi|255971824|ref|ZP_05422410.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1] gi|256616720|ref|ZP_05473566.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256763401|ref|ZP_05503981.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3] gi|256958005|ref|ZP_05562176.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5] gi|257079943|ref|ZP_05574304.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1] gi|257087744|ref|ZP_05582105.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6] gi|257091016|ref|ZP_05585377.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis CH188] gi|294779698|ref|ZP_06745086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis PC1.1] gi|300861270|ref|ZP_07107357.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TUSoD Ef11] gi|307269190|ref|ZP_07550545.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4248] gi|307277017|ref|ZP_07558126.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2134] gi|307288600|ref|ZP_07568582.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0109] gi|307290217|ref|ZP_07570133.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0411] gi|312900139|ref|ZP_07759455.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0470] gi|312902602|ref|ZP_07761808.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0635] gi|29344719|gb|AAO82477.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis V583] gi|227176623|gb|EEI57595.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis HH22] gi|229305730|gb|EEN71726.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis ATCC 29200] gi|255962842|gb|EET95318.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1] gi|256596247|gb|EEU15423.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256684652|gb|EEU24347.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3] gi|256948501|gb|EEU65133.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5] gi|256987973|gb|EEU75275.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1] gi|256995774|gb|EEU83076.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6] gi|256999828|gb|EEU86348.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis CH188] gi|294453189|gb|EFG21603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis PC1.1] gi|300850309|gb|EFK78059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TUSoD Ef11] gi|306498638|gb|EFM68139.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0411] gi|306500435|gb|EFM69770.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0109] gi|306506312|gb|EFM75473.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2134] gi|306514482|gb|EFM83042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4248] gi|310634272|gb|EFQ17555.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0635] gi|311292774|gb|EFQ71330.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0470] gi|315025455|gb|EFT37387.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2137] gi|315032629|gb|EFT44561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0017] gi|315035150|gb|EFT47082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0027] gi|315143828|gb|EFT87844.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2141] gi|315154258|gb|EFT98274.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0031] gi|315159651|gb|EFU03668.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0312] gi|315162057|gb|EFU06074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0645] gi|315165347|gb|EFU09364.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1302] gi|315573755|gb|EFU85946.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0309B] gi|315579587|gb|EFU91778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0630] gi|315580330|gb|EFU92521.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0309A] gi|323481702|gb|ADX81141.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis 62] gi|327535993|gb|AEA94827.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus faecalis OG1RF] gi|329572917|gb|EGG54538.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1467] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|257484501|ref|ZP_05638542.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013236|gb|EGH93292.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 737 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|159026043|emb|CAO86284.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 321 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 26/201 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G + L + + A LF G +GIG+ + +L R Sbjct: 6 RLIGQNQAIELLQRALEVNSIAPAYLFAGAKGIGRNLAAKCFCQDLL---------TRDR 56 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---------------ITVDEIRR 117 +P+ +K+ D L++ + GK T I +++IR Sbjct: 57 SPETRELILKRFLGGNHPDLLWIEPTYQ-HQGKLLTAKEAQESNLKRKAPPQIRIEQIRE 115 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FLS V++I+ D M +AANALLK+LEE P K ILI+ + ++L T+ Sbjct: 116 ITNFLSRPPLESARSVVVIEEADTMTESAANALLKTLEE-PGKATLILIAPSPSSLLPTL 174 Query: 178 RSRCLSIKFNSLSENNLYKAL 198 SRC I F LSE NL + L Sbjct: 175 VSRCQHIPFQRLSEENLAQVL 195 >gi|157829166|ref|YP_001495408.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933895|ref|YP_001650684.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii str. Iowa] gi|157801647|gb|ABV76900.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908982|gb|ABY73278.1| DNA polymerase III subunit gamma/tau [Rickettsia rickettsii str. Iowa] Length = 509 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 232 >gi|257421610|ref|ZP_05598600.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis X98] gi|257163434|gb|EEU93394.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis X98] gi|315155639|gb|EFT99655.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0043] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|268318150|ref|YP_003291869.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus DSM 4252] gi|262335684|gb|ACY49481.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus DSM 4252] Length = 610 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 20/191 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----- 58 R + P + L E + + L R+ HA LF G +G+GK T A + Sbjct: 11 RKYRPQLFRELVAQEHVTETLKNALRLNRLGHAYLFSGPRGVGKTTAARLLAKAINCQTP 70 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 L+ + P R C + C F + +L+ F + S N V+++R + Sbjct: 71 LEEREDHAEPCRRC--EACVAFEE---GRSLNVFEIDAASNN----------KVEDVREL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFI + +L TI Sbjct: 116 RETVRVPPQGARKKVYIIDEVHMLSNAAFNALLKTLEEPPPHALFIFATTEPHKVLPTIL 175 Query: 179 SRCLSIKFNSL 189 SRC F + Sbjct: 176 SRCQRFDFRRI 186 >gi|94263061|ref|ZP_01286880.1| DNA polymerase III delta prime subunit [delta proteobacterium MLMS-1] gi|93456604|gb|EAT06712.1| DNA polymerase III delta prime subunit [delta proteobacterium MLMS-1] Length = 387 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 55/229 (24%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPD------------ 63 + ++ LS+ SG++ HA LF G G+GK + A + Q P Sbjct: 11 QDPAKEMLSRALNSGKLAHAYLFRGPAGVGKKRAAYALAATLNCQQPPPTDSRQVTNQGD 70 Query: 64 ------------FSKAPVRMCNPDP--------------------CS--PFVKQMASHAL 89 S+ +R +P C P ++ A+ + Sbjct: 71 HEVSDHGVPHLAASETAMRTSVREPARSPQDAVPRDRLPRQGLEACGRCPACRKFAAGSH 130 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D L +S I + ++R I+ L G +RV+++ V M R AAN+ Sbjct: 131 PDLLTVSPE--------GAAIKIGQVREIKKALRFPPLEGSYRVVLVKEVQTMRREAANS 182 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LLK LEEPP + IL + IL TI SRC I F +LS + L Sbjct: 183 LLKILEEPPPATILILTGDEAGAILPTILSRCQVIPFYALSTATVATML 231 >gi|315170423|gb|EFU14440.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1342] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|307292717|ref|ZP_07572563.1| DNA polymerase III, subunits gamma and tau [Sphingobium chlorophenolicum L-1] gi|306880783|gb|EFN11999.1| DNA polymerase III, subunits gamma and tau [Sphingobium chlorophenolicum L-1] Length = 538 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 14/183 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ GR+ HA L G +G+GK + R L Sbjct: 10 VLARKYRPRNFRELIGQDAMVQTLANAIRRGRLAHAFLMTGVRGVGKTSTA-RLIAKALN 68 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P DPC MA + TG VD++R I Sbjct: 69 CVGPDGQGGPTI----DPCGACEPCMAIAEGRHIDVVEMDAASHTG-------VDDVREI 117 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + A + +++ +ID V +++NA NALLK+LEEPP V F+ + + T+ Sbjct: 118 IEAVRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVL 177 Query: 179 SRC 181 SRC Sbjct: 178 SRC 180 >gi|93006233|ref|YP_580670.1| DNA polymerase III, subunits gamma and tau [Psychrobacter cryohalolentis K5] gi|92393911|gb|ABE75186.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter cryohalolentis K5] Length = 685 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C D C + D + + + K V++ R + Sbjct: 67 DTGITSTPCGVC--DNCVAIDQ----GRFIDLIEIDAASRTK---------VEDTRELLD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NVPYAPSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSENNLYKAL 198 CL LS++ L + L Sbjct: 172 CLQFVLRPLSQSLLSEHL 189 >gi|312796075|ref|YP_004028997.1| DNA polymerase III subunit gamma/tau [Burkholderia rhizoxinica HKI 454] gi|312167850|emb|CBW74853.1| DNA polymerase III subunit gamma/tau (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 840 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L+ + R+HHA LF G +G+GK TL A + + P +C Sbjct: 18 LVGQEHVVRALTHALQAQRLHHAYLFTGTRGVGKTTLSRILAKALNCEAGITATPCGVCK 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D++ + + N VDE+ + ++V Sbjct: 78 ------ACREIDEGRFVDYVEMDAASN---------RGVDEMAALLERAVYAPVDARFKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 MID V + +A N++LK+LEEPP V FIL + I T+ SRCL + + Sbjct: 123 YMIDEVHMLTHHAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182 Query: 194 LYKALEQL 201 + LE++ Sbjct: 183 IVSHLERI 190 >gi|320106731|ref|YP_004182321.1| DNA polymerase III subunits gamma and tau [Terriglobus saanensis SP1PR4] gi|319925252|gb|ADV82327.1| DNA polymerase III, subunits gamma and tau [Terriglobus saanensis SP1PR4] Length = 763 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 21/204 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG---- 56 ++ R + P+ + G + + + L R+ H +F G +GIGK T+ A Sbjct: 82 VLARKYRPLLFSDVAGQDHVTRTLENALNQQRIAHGYIFSGHRGIGKTTIARILASALNC 141 Query: 57 -HVLQNPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + + +P+ A P +C D C V+ +A+ D L + + N +DE Sbjct: 142 QYPIGSPERPTAEPCLIC--DSC---VEIRQGNAV-DVLEIDAATN---------RGIDE 186 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR +R + +++I++D + A NALLK+LEEPP ++F++ + I Sbjct: 187 IRELRDAARYRPSRDKFKIIILDEAHQITDAAFNALLKTLEEPPDHIVFMMATTEPENIP 246 Query: 175 STIRSRCLSIKFNSLSENNLYKAL 198 TIRSRC F+++ +++ L Sbjct: 247 QTIRSRCQHFSFHAVKLDDIITEL 270 >gi|255974819|ref|ZP_05425405.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2] gi|307278710|ref|ZP_07559778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0860] gi|255967691|gb|EET98313.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2] gi|306504650|gb|EFM73852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0860] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|257059430|ref|YP_003137318.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 8802] gi|256589596|gb|ACV00483.1| DNA polymerase III, delta prime subunit [Cyanothece sp. PCC 8802] Length = 319 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 21/230 (9%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPD--- 63 Y ++L G + L Q R+ A LF G GIG++ ++ +L +P+ Sbjct: 5 YFRQLRGQPQAVELLQQAIAKNRIATAYLFVGPVGIGRSLAAKCFSEALLSLNLSPEQQL 64 Query: 64 -FSKAPVRMCNPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 SK ++ +PD P Q+ + + L + P+ I +++IR Sbjct: 65 LVSKRVIQGNHPDLLWVEPSYQHQGQLITAQEAEKLGVKRKAPPQ-------IRIEQIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FL+ +++I+ M AANALLK+LEEP Q L IL++ + T+L+T+ Sbjct: 118 ITRFLNRPPLEASRALVVIEAAQSMTEAAANALLKTLEEPGQATL-ILMAPSVDTLLATL 176 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC I F LSE +L L + + G V A GS AI + Sbjct: 177 VSRCQKIPFYRLSEEDLKTVLTE-QGQGEILNNTEVLALAQGSPGEAIAV 225 >gi|83645393|ref|YP_433828.1| DNA polymerase III subunits gamma and tau [Hahella chejuensis KCTC 2396] gi|83633436|gb|ABC29403.1| DNA polymerase III, gamma/tau subunit [Hahella chejuensis KCTC 2396] Length = 735 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + K L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVGKTTVARIFAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V+++R + Sbjct: 65 EQGVSAIPCGECG------VCREIAEGRFVDLIEIDAASRTK---------VEDMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRSRYKIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +LS + L Sbjct: 170 CLQFNLKNLSPQRIVSHL 187 >gi|89100953|ref|ZP_01173799.1| DnaX [Bacillus sp. NRRL B-14911] gi|89084324|gb|EAR63479.1| DnaX [Bacillus sp. NRRL B-14911] Length = 564 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 19/183 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMC 72 + G E + K L + HA LF G +G GK + A V + +AP+ C Sbjct: 18 VVGQEHVTKTLQNALLQQKASHAYLFSGPRGTGKTSAAKILAKTV----NCERAPISEPC 73 Query: 73 NP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N D C + + ++ D + + + N V+EIR IR + + + Sbjct: 74 NECDSCIG----ITNGSIPDVIEIDAASNN---------GVEEIRDIRDKVKYAPSAVKY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D V ++ A NALLK+LEEPP+ V+FIL + I TI SRC F ++ Sbjct: 121 KVYIVDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQRFDFKRITA 180 Query: 192 NNL 194 ++ Sbjct: 181 QSI 183 >gi|322420737|ref|YP_004199960.1| DNA polymerase III, delta prime subunit [Geobacter sp. M18] gi|320127124|gb|ADW14684.1| DNA polymerase III, delta prime subunit [Geobacter sp. M18] Length = 320 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 29/219 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E L + R+ HA LF G +G GK V + Sbjct: 6 VIGQELAISVLKRSIALERVAHAYLFSGIEGCGKRKTALAMVQAVFCGKE---------- 55 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D C P +++A+ D + L P G + I +D+IR ++ LS Sbjct: 56 -DACGVCPSCRKVANGQHPDL----HILEPD-GAF---IKIDQIRELQKELSYRPFEAPK 106 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 + +ID + +N ++ NALLK+LEEPP L ILI+ +L TI SRC ++ F L Sbjct: 107 KACIIDGAERLNLSSGNALLKTLEEPPGNALMILITAERSAVLQTILSRCQTLSFQPLPA 166 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAY---GSVARAIKI 227 + + + +++ + +IAA GS++RA++I Sbjct: 167 DMI-----EGRLVREQFPAEAARIAASLSGGSLSRAVEI 200 >gi|73663581|ref|YP_302362.1| DNA polymerase III delta' subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496096|dbj|BAE19417.1| DNA polymerase III delta' subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 309 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 22/185 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L++ Y S ++ HA LFEG+ G + DF+K + +CN D Sbjct: 3 DEQERLTKAYQSNKLSHAYLFEGDDGQTMQQVAI----------DFTK--LILCNGDYQC 50 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 + +H DF+Y+S T I D++ ++ + ++ G ++V +I+ Sbjct: 51 QLKVETFNHP--DFMYISSE--------ETTIKKDQVEQLVHHMNQLPIEGDYKVYIIES 100 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + N++LK LE+PP+ + IL++ IL TI SRC + F + + L Sbjct: 101 FEKLTVQGENSILKFLEDPPENTIAILLTTKPEQILDTIHSRCQHVYFKPIDKTKFINRL 160 Query: 199 EQLKI 203 + +I Sbjct: 161 VEREI 165 >gi|238788050|ref|ZP_04631846.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC 33641] gi|238723998|gb|EEQ15642.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC 33641] Length = 655 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 26/242 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFLDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL + + LE++ ++ S ARA+++L D + + Sbjct: 170 CLQFHLKVIDVEVIRALLEKI-----------LQAEQISSDARALQLLARAADGSMRDAL 218 Query: 241 DL 242 L Sbjct: 219 SL 220 >gi|256963882|ref|ZP_05568053.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271831|ref|ZP_07553102.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0855] gi|256954378|gb|EEU71010.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511709|gb|EFM80708.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0855] gi|315148740|gb|EFT92756.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4244] Length = 586 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|257084256|ref|ZP_05578617.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1] gi|256992286|gb|EEU79588.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1] Length = 586 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus PCC 7421] gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus PCC 7421] Length = 632 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 30/208 (14%) Query: 5 AFDPVYN----QR---LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYA 55 A++P+++ QR + G I L+ +GR+ HA LF G +G GK T A Sbjct: 2 AYEPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKA 61 Query: 56 GHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 + + P PDPC + +A+ + D + + + N TG VD Sbjct: 62 LNCIHGP----------TPDPCGRCEQCLAIATGSALDVIEIDAASN--TG-------VD 102 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 IR + +V ++D V ++ A N LLK+LEEPP V F+L + + Sbjct: 103 NIRELIERAQFAPVQSRQKVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKV 162 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 L T+ SRC F + ++ K LE++ Sbjct: 163 LPTVISRCQRFDFRRIPLTDMVKHLEEI 190 >gi|84393883|ref|ZP_00992626.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01] gi|84375480|gb|EAP92384.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01] Length = 321 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVD++R + ++ G RVI+++P + MN +A+NALLK+LEEP K +FIL + Sbjct: 88 ITVDQVRASNRWAQQSSQLGGLRVILLNPAEAMNESASNALLKTLEEPSSKCIFILSTRN 147 Query: 170 SPTILSTIRSRCLSIKFNSLS 190 S ++ TI SRC +FN +S Sbjct: 148 SNRLMPTIISRCQ--QFNVVS 166 >gi|257420166|ref|ZP_05597160.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11] gi|257161994|gb|EEU91954.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11] Length = 586 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|255012092|ref|ZP_05284218.1| putative DNA polymerase III delta prime subunit [Bacteroides fragilis 3_1_12] gi|313149933|ref|ZP_07812126.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138700|gb|EFR56060.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 369 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 24/241 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + G E ++ L Q GR+ HA LF G +G+GK L YA ++ +C Sbjct: 6 VIGQEAAKQRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSETDACGVCP 65 Query: 73 ---------NPDP--CSPFVKQMASHAL----------HDFLYLSYSLNPKTGK-WRTVI 110 +PD P VK S + + +++ LN + + VI Sbjct: 66 SCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAENAQAVI 125 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 E I LSL ++ G +++ ++ + M + AN LLK LEEPPQK +F+L+S Sbjct: 126 YTKESDEIMKKLSLKSSEGGFKITILWLPEKMQQACANKLLKLLEEPPQKTIFLLVSENP 185 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 IL TI SR + E + AL Q K + + A G+ +A++ +H Sbjct: 186 ELILQTILSRTQRFNLRKIDEQCIADAL-QNKYGVQQATSISIAHLANGNFIKALETIHL 244 Query: 231 D 231 + Sbjct: 245 N 245 >gi|330431478|gb|AEC16537.1| DNA polymerase III subunit delta' [Gallibacterium anatis UMN179] Length = 333 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 25/175 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSK 66 P+Y Q ++Q + +G HHALL G F A +L +N ++ Sbjct: 15 PIYQQ-----------VTQAFSAGYGHHALLIRSANDNGAEQCCFALAQWLLCENKQAAQ 63 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 A C C F+ H H YL +S K I+VD IR + LS + Sbjct: 64 AACGHCRQ--CQLFL-----HHSHPDFYLIHSEEGKK------ISVDTIREVTDKLSRRS 110 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V+ + V+ + AANALLK+LEEP + FIL ++ +L+TI+SRC Sbjct: 111 QQQAVKVVYLQGVEQLTEAAANALLKTLEEPTEDSYFILQTNVEHRVLATIQSRC 165 >gi|197284051|ref|YP_002149923.1| DNA polymerase III subunits gamma/tau [Proteus mirabilis HI4320] gi|194681538|emb|CAR40452.1| DNA polymerase III Tau subunit (contains DNA polymerase III Gamma subunit) [Proteus mirabilis HI4320] Length = 658 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 43/252 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITSKPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVARAIK 226 + TI SRCL +L + + LE K++ + R + AA GS+ A+ Sbjct: 162 LPVTILSRCLQFHLRALDVDQIATQLE--KVLSAEHIENDVRARQLIARAADGSMRDALS 219 Query: 227 ILHYDCDKIISS 238 + D+ I+S Sbjct: 220 L----TDQAIAS 227 >gi|317492363|ref|ZP_07950792.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919702|gb|EFV41032.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 328 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 14/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 +GR HHALL G G +L + ++ Q P+ K+ C+ + M + Sbjct: 20 AGRGHHALLVHAIAGCGDDSLMYALGRWLMCQRPNGDKS-CGECH------SCRLMLAGN 72 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ Y L P+ GK + + ++ +R+I L A G +V+++ + + AAN Sbjct: 73 HPDW----YHLQPEKGK--SSLGIEPVRQIIEQLYAHAQQGGAKVVLLPLAETLTEAAAN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEPP+K F+L + +L+T+RSRC Sbjct: 127 ALLKTLEEPPEKTYFLLGTREPANLLATLRSRC 159 >gi|295113711|emb|CBL32348.1| DNA polymerase III, subunits gamma and tau [Enterococcus sp. 7L76] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|315149916|gb|EFT93932.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0012] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|256960974|ref|ZP_05565145.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96] gi|293384387|ref|ZP_06630270.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis R712] gi|293388163|ref|ZP_06632686.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis S613] gi|312908210|ref|ZP_07767180.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 512] gi|312978640|ref|ZP_07790371.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 516] gi|256951470|gb|EEU68102.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96] gi|291078286|gb|EFE15650.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis R712] gi|291082453|gb|EFE19416.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis S613] gi|310625799|gb|EFQ09082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 512] gi|311288542|gb|EFQ67098.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 516] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|171058562|ref|YP_001790911.1| DNA polymerase III subunit delta' [Leptothrix cholodnii SP-6] gi|170776007|gb|ACB34146.1| DNA polymerase III, delta prime subunit [Leptothrix cholodnii SP-6] Length = 360 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 51/90 (56%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V++IR F LTA +V+++ P + +N AANALLK+LEEPP + F+L S A Sbjct: 130 IKVEQIRAAINFSELTAGRASLKVLVVYPAEALNTVAANALLKTLEEPPGTLRFVLASAA 189 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + +T+RSRC S+ + LE Sbjct: 190 PQALPATVRSRCQSVPLRPPPADQALAWLE 219 >gi|161524555|ref|YP_001579567.1| DNA polymerase III subunit delta' [Burkholderia multivorans ATCC 17616] gi|189350689|ref|YP_001946317.1| DNA polymerase III subunit delta' [Burkholderia multivorans ATCC 17616] gi|160341984|gb|ABX15070.1| DNA polymerase III, delta prime subunit [Burkholderia multivorans ATCC 17616] gi|189334711|dbj|BAG43781.1| DNA polymerase III delta' subunit [Burkholderia multivorans ATCC 17616] Length = 342 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + ++P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLARGFLCESPQPNGEPCGTCAACTWFAQGNHPDYRIVLPEA 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAADDAKPADADDGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGLRVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPPGVVFLLVSARIDRLLPTIVSRC 183 >gi|325833707|ref|ZP_08166122.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1] gi|325485247|gb|EGC87717.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1] Length = 743 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 7 RKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCECG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 + P C D C M ++ H +Y +TG V+ +R I + Sbjct: 67 PTPEPDGTC--DDCV-----MIANGEHPDVY-ELDAASRTG-------VENVREEIIGRV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 112 QFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F +S ++ L Sbjct: 172 RFDFRRISAESIVSRL 187 >gi|312951953|ref|ZP_07770841.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0102] gi|310630142|gb|EFQ13425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0102] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|289626398|ref|ZP_06459352.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866322|gb|EGH01031.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 741 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|258510125|ref|YP_003183559.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476851|gb|ACV57170.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 21/204 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 RA+ P + L G + + L+ SG++ HA LF G +G GK + A V LQ Sbjct: 8 RAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAVNCLQP 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P C + C+ Q S+ D + + N VDEIR +R Sbjct: 68 RDGFE-PCNAC--EACTSI--QRGSNV--DVQEIDAASN---------RGVDEIRDLRDH 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V ++D V + A NALLK+LEEPP VLF+L + + +TI SRC Sbjct: 112 VHYLPTMAKKKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRC 171 Query: 182 LSIKFNSLSENNLYKALEQLKIMG 205 F ++ + +E+L+++ Sbjct: 172 QRFDFRRIAPEAI---VERLRLVA 192 >gi|227358077|ref|ZP_03842419.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma subunit) [Proteus mirabilis ATCC 29906] gi|227161812|gb|EEI46844.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma subunit) [Proteus mirabilis ATCC 29906] Length = 658 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 43/252 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITSKPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVARAIK 226 + TI SRCL +L + + LE K++ + R + AA GS+ A+ Sbjct: 162 LPVTILSRCLQFHLRALDVDQIATQLE--KVLSAEHIENDVRARQLIARAADGSMRDALS 219 Query: 227 ILHYDCDKIISS 238 + D+ I+S Sbjct: 220 L----TDQAIAS 227 >gi|218246387|ref|YP_002371758.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 8801] gi|218166865|gb|ACK65602.1| DNA polymerase III, delta prime subunit [Cyanothece sp. PCC 8801] Length = 319 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 21/230 (9%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPD--- 63 Y ++L G + L Q R+ A LF G GIG++ ++ +L +P+ Sbjct: 5 YFRQLRGQPQAVELLQQAIAKNRIATAYLFVGPVGIGRSLAAKCFSEALLSLNLSPEQQL 64 Query: 64 -FSKAPVRMCNPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 SK ++ +PD P Q+ + + L + P+ I +++IR Sbjct: 65 LVSKRVIQGNHPDLLWVEPSYQHQGQLITAQEAEKLGVKRKAPPQ-------IRIEQIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FL+ +++I+ M AANALLK+LEEP Q L IL++ + T+L+T+ Sbjct: 118 ITRFLNRPPLEASRALVVIEAAQSMTEAAANALLKTLEEPGQATL-ILMAPSVDTLLATL 176 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC I F LSE +L L + + G V A GS AI + Sbjct: 177 VSRCQKIPFYRLSEEDLKTVLTE-QGQGEILNNTEVLALAQGSPGEAIAV 225 >gi|166367882|ref|YP_001660155.1| DNA polymerase III subunit delta' [Microcystis aeruginosa NIES-843] gi|166090255|dbj|BAG04963.1| DNA polymerase III delta prime subunit [Microcystis aeruginosa NIES-843] Length = 321 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 26/201 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G + L + + A LF G +GIG+ + +L R Sbjct: 6 RLIGQNQAIELLQRALEINSIAPAYLFAGAKGIGRNLAAKCFCQDLL---------TRDR 56 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---------------ITVDEIRR 117 +P+ +K+ D L++ + GK T I +++IR Sbjct: 57 SPETRELILKRFLGGNHPDLLWIEPTYQ-HQGKLLTAKEAQESNLKRKAPPQIRIEQIRE 115 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FLS V++I+ D M +AANALLK+LEE P K ILI+ + ++L T+ Sbjct: 116 ITNFLSRPPLESSRSVVVIEQADTMTESAANALLKTLEE-PGKATLILIAPSPSSLLPTL 174 Query: 178 RSRCLSIKFNSLSENNLYKAL 198 SRC I F LSE NL + L Sbjct: 175 VSRCQHIPFQRLSEENLAQVL 195 >gi|75908184|ref|YP_322480.1| DNA polymerase III subunit delta' [Anabaena variabilis ATCC 29413] gi|75701909|gb|ABA21585.1| DNA polymerase III, delta prime subunit [Anabaena variabilis ATCC 29413] Length = 320 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 21/284 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKA-------TLGFR 53 M + F P L G + + L+Q R+ A LF G G+G++ L F Sbjct: 1 MTNNPFAP-----LVGQKQAIELLTQAVKQNRVAPAYLFAGPDGVGRSLAARCFVELLFA 55 Query: 54 YAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P + + +PD +V+ + F + K +I ++ Sbjct: 56 SVVEARLLPSLQQRLRQGNHPDLL--WVQPTYQYQGQRFTAAQAAEKKLKRKAPPLIRLE 113 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR I FLS V++++ M AANALLK+LEEP Q + +LI+ + ++ Sbjct: 114 QIREITEFLSRPPLEAPRNVVVLEEAQTMAEPAANALLKTLEEPGQATI-VLITPSPESV 172 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L T+ SRC I F SL +L + L Q + +A+ GS AI Y+ Sbjct: 173 LPTLVSRCQRIPFYSLDTTSLTQVLTQTGNQAVLQHPALLSLAS-GSPGSAIA--SYEQL 229 Query: 234 KIISSYI--DLIHIPR-QEYALQKMQQIADELLSQDQKIAFDFL 274 + I + DL P+ Q +AL+ ++I +L ++ Q D+L Sbjct: 230 QTIPPDLLQDLTTAPKSQRHALELAKRIDKDLETEAQLWLVDYL 273 >gi|315173519|gb|EFU17536.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1346] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|289649552|ref|ZP_06480895.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 2250] Length = 741 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|257081660|ref|ZP_05576021.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol] gi|256989690|gb|EEU76992.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|152996553|ref|YP_001341388.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MWYL1] gi|150837477|gb|ABR71453.1| DNA polymerase III, subunits gamma and tau [Marinomonas sp. MWYL1] Length = 752 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 16/202 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAKCLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S P C D C +++A D + + + K V++ R + Sbjct: 65 ETNGISPEPCGTC--DSC----REIAEGRFVDLIEVDAASRTK---------VEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI S Sbjct: 110 ENVQYAPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RCL ++S + L+ + Sbjct: 170 RCLQFNLKNMSPQRVVDYLQTV 191 >gi|331270686|ref|YP_004397178.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum BKT015925] gi|329127236|gb|AEB77181.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum BKT015925] Length = 541 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 25/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I L + R+ HA LF G +G GK + Sbjct: 8 REWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTA----------KI 57 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 FSKA V NP +PC+ K++ + D + + + K VD+IR + Sbjct: 58 FSKA-VNCLNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNK---------VDDIRDL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V ++D + + A NA LK+LEEPP+ V+FIL + + TI Sbjct: 108 IEEVKYPPREGKYKVYIMDEAHMLTQGAVNAFLKTLEEPPENVVFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SRC F + +++ + L Sbjct: 168 SRCQRFDFKRIKSDDILQRL 187 >gi|227519437|ref|ZP_03949486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX0104] gi|227073049|gb|EEI11012.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX0104] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|50120736|ref|YP_049903.1| DNA polymerase III subunit delta' [Pectobacterium atrosepticum SCRI1043] gi|49611262|emb|CAG74708.1| DNA polymerase III, delta' subunit [Pectobacterium atrosepticum SCRI1043] Length = 336 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 19/164 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCS 78 + +SQY +GR HHA+L G+G +L + + ++ + PD K+ CN Sbjct: 13 QLISQYQ-AGRGHHAVLLHALPGMGDESLIYALSRWLICKRPDGMKSCGQCHSCN----- 66 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 M + D+ + L+P+ GK + VD +R + + + G +VI + Sbjct: 67 ----LMTAGTHPDW----HVLSPEKGK--HSLGVDPVRDVVEKVYQHSRQGGAKVIWLAS 116 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + AANALLK+LEEPPQ F+L +L+T+RSRCL Sbjct: 117 AEQLTEAAANALLKTLEEPPQNTFFLLGCREPARLLATLRSRCL 160 >gi|257416948|ref|ZP_05593942.1| DNA-directed DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158776|gb|EEU88736.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 586 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 23/228 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L + HA LF G +G GK + +A + P +C Sbjct: 18 VVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKHSQDGEPCNVC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + L+D + + + N V+EIR IR ++V Sbjct: 77 -ETCVAITE----GRLNDVIEIDAASNNG---------VEEIRDIRDKAKYAPTQAEYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR F +S + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 + + ++ M D + + + AA G + A+ IL D+ IS Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 >gi|126660295|ref|ZP_01731409.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. CCY0110] gi|126618401|gb|EAZ89156.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. CCY0110] Length = 373 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + ++K L++ + ALL G +G GK + A + + P C Sbjct: 25 LTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARIIAMSLNCEKGVTTTPCGECK 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C ++ S + + S++ VD+IR++ S + RV Sbjct: 85 N--CQA-IQNGNSLDVVELDAASHN------------GVDDIRKLVADASYAPFSARTRV 129 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID ++ +A NA LK+LEEP F+L + +L T+RSRCL ++F +S++ Sbjct: 130 FIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQSE 189 Query: 194 LYKALEQL 201 + K LE++ Sbjct: 190 VAKRLEEI 197 >gi|77458032|ref|YP_347537.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens Pf0-1] gi|77382035|gb|ABA73548.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens Pf0-1] Length = 696 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSSPCGECS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|212711281|ref|ZP_03319409.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM 30120] gi|212686010|gb|EEB45538.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM 30120] Length = 648 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 35/239 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITATPCGKC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSK-RDFVKIAAYGSVARAIKI 227 + TI SRCL +L + + LE + + + D++ R + AA GS+ A+ + Sbjct: 162 LPVTILSRCLQFHLKALDVAQISEQLELILNAENIEHDTRARQLIARAADGSLRDALSL 220 >gi|33862332|ref|NP_893892.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9313] gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9313] Length = 606 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 24/207 (11%) Query: 2 IDRAFDPVYN----QR---LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P+++ QR L G + I LS S R+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L + + P+PC K +A+ D + + + N TG V Sbjct: 60 LARSLNCLNCDQP-----TPEPCGNCELCKSIAAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRELIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALE 199 +L TI SRC F + L + LE Sbjct: 166 VLPTILSRCQRFDFRRIPLEALEQHLE 192 >gi|262278910|ref|ZP_06056695.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] gi|262259261|gb|EEY77994.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] Length = 326 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+QG GK + VL +K C CS + + S ++++ Sbjct: 29 HGLLFYGKQGCGKHAFAKHFLAWVLC---LNKQAHGACGE--CSS-CQWLKSDTHPNYVH 82 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 ++ + + K I +++IR + F+ T WRVI+I+P + +N ++NALLK+L Sbjct: 83 IT--TDEENKKQNAKIKIEKIRDLLPFVQQTGEG--WRVILIEPAEALNLASSNALLKTL 138 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++V+ IL++ + +TIRSR Sbjct: 139 EEPGERVVLILLADHYLKLPATIRSR 164 >gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102] gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102] Length = 593 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 23/205 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L S R+ A LF G +G GK T R L N S P Sbjct: 19 QLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGK-TSSARILARSL-NCLNSDGP---- 72 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P+PC +A+ D + + + N TG VD IR + Sbjct: 73 TPEPCGTCELCTTIAAGTALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKI 215 + L L W ++++ ++I Sbjct: 184 LDALEAHLS------WIAEQEAIEI 202 >gi|315179583|gb|ADT86497.1| DNA polymerase III, delta prime subunit [Vibrio furnissii NCTC 11218] Length = 321 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+VD+IR+ ++ +R+I+I+P + MN +AANALLK+LEEP +K +F+L++ Sbjct: 88 ISVDQIRQCNRLAQESSQLSGYRLIVIEPAEAMNESAANALLKTLEEPAEKCVFVLLTSR 147 Query: 170 SPTILSTIRSRCLSIKF 186 +L TI SRC I Sbjct: 148 INHLLPTIVSRCQQITI 164 >gi|237808931|ref|YP_002893371.1| DNA polymerase III, delta prime subunit [Tolumonas auensis DSM 9187] gi|237501192|gb|ACQ93785.1| DNA polymerase III, delta prime subunit [Tolumonas auensis DSM 9187] Length = 319 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 13/156 (8%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 Q + S R+ HA L G GIGK+ L ++A L P C+ Q++ Sbjct: 14 QVFASKRLPHAFLLVGPAGIGKSALAVQWASLFLCEQPQQNTPCGKCH-------ACQLS 66 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 H ++ + + K+ I VD IR++ L + G +V +I + M Sbjct: 67 GKQTHPDWHVYGADDAKS------IGVDIIRQLSAQLMNSPQLGRGKVAVILQAERMTEA 120 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A NALLK+LEEPP L IL + ++ +L TI SRC Sbjct: 121 AENALLKTLEEPPGNSLLILQAESAMKLLPTIVSRC 156 >gi|304315608|ref|YP_003850753.1| DNA polymerase III delta prime subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777110|gb|ADL67669.1| DNA polymerase III, delta prime subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 320 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +++GH++I ++ S ++ +A LF GE G GK + +Y ++ + SK P C Sbjct: 3 KIYGHKNILALFNKIVSSQKIANAYLFIGESGFGKEFMA-KYFAMMINCKNGSK-PCLSC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSY-SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P QM S D ++ ++ K R V+ + + Y Sbjct: 61 ------PSCIQMISGNHPDIFFIEPDGISIKVETLRNVVINNAY--------VKPYNSYK 106 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I + M A N++LK+LEEPP+ LFIL S +L TI SRC I+F S+ Sbjct: 107 KIFIIKEAEKMTEQAQNSILKTLEEPPEYGLFILTSSKMEGLLPTIVSRCEIIRFTRESD 166 >gi|307822531|ref|ZP_07652762.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] gi|307736135|gb|EFO06981.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] Length = 540 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 27/236 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-- 58 ++ R + P + G E + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPHNFTEVVGQEHVVKSLMNALQHDRLHHAYLFTGTRGVGKTTIARILAKAINC 64 Query: 59 --LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 LQ DF+ P +C+ + + D + + + K V++ R Sbjct: 65 ENLQ--DFN--PCGVCS------VCRDLDEGRFLDLIEVDAASRTK---------VEDTR 105 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + N G ++V +ID V ++ ++ NALLK+LEEPP V F+L + I T Sbjct: 106 DLLDNAQYAPNHGRYKVYLIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPHKIPVT 165 Query: 177 IRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + SRCL L + ++ +E Q I + AA GS+ + +L Sbjct: 166 VLSRCLQFNLKRLLPSQIFTQMEFILQQEHIEAESGALKLLSRAADGSMRDGLSLL 221 >gi|303325567|ref|ZP_07356010.1| DNA polymerase III, gamma and tau subunits [Desulfovibrio sp. 3_1_syn3] gi|302863483|gb|EFL86414.1| DNA polymerase III, gamma and tau subunits [Desulfovibrio sp. 3_1_syn3] Length = 633 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 19/195 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G + ++ LS+ R A L G +G+GK T+ +A + + Sbjct: 10 YRPQTFAQVAGQDMVKAVLSRAAAEDRPAAAYLLSGTRGVGKTTIARIFAKAL----NCE 65 Query: 66 KAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 AP P+PC+ +++ A D + + N +V++ R +R + Sbjct: 66 HAP----GPEPCNECAQCRKITQGAHVDVTEIDGASN---------NSVEDARSLRETIG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID + RNA NALLK+LEEPP++V+FI + + TI SRC Sbjct: 113 YAPMEGRYKIFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQH 172 Query: 184 IKFNSLSENNLYKAL 198 F LSE+ L + L Sbjct: 173 FVFRHLSEDALAEHL 187 >gi|330808463|ref|YP_004352925.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376571|gb|AEA67921.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 691 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGECS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL +++ + + L Sbjct: 170 CLQFSLKNMTPERVVEHL 187 >gi|326795606|ref|YP_004313426.1| DNA polymerase III subunits gamma and tau [Marinomonas mediterranea MMB-1] gi|326546370|gb|ADZ91590.1| DNA polymerase III, subunits gamma and tau [Marinomonas mediterranea MMB-1] Length = 816 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 22/233 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAKSL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +P+PC ++A D + + + K V++ R + Sbjct: 63 -----NCETNGISPEPCGTCSSCTEIAEGRFVDLIEVDAASRTK---------VEDTREL 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI Sbjct: 109 LENVQYAPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 168 Query: 179 SRCLSIKFNSLSENNLYKALEQL---KIMGWDSKRDF-VKIAAYGSVARAIKI 227 SRCL ++S + L + + +G+D + + AA GS+ A+ + Sbjct: 169 SRCLQFNLKNMSAQRVVDYLHTVLNAENVGYDQAALWQIGQAANGSMRDALSL 221 >gi|229528966|ref|ZP_04418356.1| DNA polymerase III delta prime subunit [Vibrio cholerae 12129(1)] gi|229332740|gb|EEN98226.1| DNA polymerase III delta prime subunit [Vibrio cholerae 12129(1)] Length = 324 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 15/153 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G++ A L + +G+G +L L P C+ S + Q +H Sbjct: 24 AGKISSATLIQVPEGLGVESL-VELMARTLMCTSSQSEPCGFCH----SCGLMQSGNHP- 77 Query: 90 HDFLYLSYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + + P K GK ITV++IR++ ++ +R+I+I+P D MN ++ N Sbjct: 78 -DF----HVVKPEKVGK---SITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSTN 129 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP LFIL++ +L TI SRC Sbjct: 130 ALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRC 162 >gi|167034829|ref|YP_001670060.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida GB-1] gi|166861317|gb|ABY99724.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida GB-1] Length = 687 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|222528532|ref|YP_002572414.1| DNA-directed DNA polymerase [Caldicellulosiruptor bescii DSM 6725] gi|222455379|gb|ACM59641.1| DNA-directed DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 320 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G+GK L ++ VL + + C + +H DF Sbjct: 25 HAYIFEGERGLGKKLLAMTFSKQVLCEEKLACGVCKSCR-------LFDALTHP--DFKL 75 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + K + + I+VD IR I +S ++ +I + M+ +A NALLK+L Sbjct: 76 I------KRDEDKKEISVDAIREIIKDISRGPIFATKKIYIIQEAEEMSTSAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 EEPP+ LFIL + +L T+ SR L + F S + + E LK G + K D+V Sbjct: 130 EEPPEYALFILTCNNLERLLPTVVSRSLVLSFKRYSSSEIS---EILKSHGLEPK-DYV 184 >gi|71065614|ref|YP_264341.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter arcticus 273-4] gi|71038599|gb|AAZ18907.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter arcticus 273-4] Length = 631 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C D C + D + + + K V++ R + Sbjct: 67 DTGITSTPCGVC--DNCVAIDQGR----FIDLIEIDAASRTK---------VEDTRELLD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NVPYAPSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSENNLYKAL 198 CL LS++ L + L Sbjct: 172 CLQFVLRPLSQSLLSEHL 189 >gi|319956021|ref|YP_004167284.1| DNA polymerase iii, subunits gamma and tau [Nitratifractor salsuginis DSM 16511] gi|319418425|gb|ADV45535.1| DNA polymerase III, subunits gamma and tau [Nitratifractor salsuginis DSM 16511] Length = 615 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 28/282 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L+Q R+ HA LF G +G GK + +A +L Sbjct: 7 RKYRPRSFADLVGQETVSQTLAQALDGDRLSHAYLFSGLRGSGKTSTARIFAKALLCEKG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C P + D + + + N +D+I+ + Sbjct: 67 PTSQPCEEC------PHCIMANEYRHMDIIEMDAASN---------RGIDDIKELIEHTK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +G +++ +ID V + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 112 YKPGSGRFKIFIIDEVHMLTTQAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQH 171 Query: 184 IKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAA---YGSVARAIKILHYDCDKIISSY 239 +F + + LE L + G D + + ++I A GS+ ++ +L D+ I Sbjct: 172 FRFKKIPPRLVKSHLEHILHLEGIDYEPEALEIIARSGAGSLRDSLTLL----DQAIVYA 227 Query: 240 IDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIE 276 + +P L K+ + D +L++D+ F+ E Sbjct: 228 KGKVDLPTVTEMLGIIDPAKLDDLLDRILNKDEAGILAFIHE 269 >gi|199599033|ref|ZP_03212440.1| DNA replication ATPase [Lactobacillus rhamnosus HN001] gi|199590069|gb|EDY98168.1| DNA replication ATPase [Lactobacillus rhamnosus HN001] Length = 325 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 17/200 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 25 QLAQSYLFVGPKGAGKLALAEWIALRLFCQHVQDGAPCGEC------PECERILNHNHPD 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L S I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 79 VMMLKTSTQS--------IKVDDIRNLKQEMSKTGVEGNQRVFIVEDADKMTAGAANSLL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + A +L TI SR I F S N + LE+ G +S+ Sbjct: 131 KFFEEPVLGMTVILTATAKNQLLPTILSRAQVITFQSPDRNAVITKLEE---GGANSQLA 187 Query: 212 FVKIAAYGSVARAIKILHYD 231 V G+V+ A ++L D Sbjct: 188 RVAGRLTGNVSEAQELLASD 207 >gi|78187456|ref|YP_375499.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] gi|78167358|gb|ABB24456.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] Length = 388 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 46/227 (20%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPD-FSKAPVR 70 R+ G + + LS GR+ HA LF G +G GK A + ++PD S Sbjct: 5 RVIGQKQQVRVLSNALEKGRLAHAYLFSGPEGSGKEMTALELAAALNCRSPDAMSNGACG 64 Query: 71 MCNPDPC-------SPFVK--------------------QMASHALHDFL---------- 93 C PD C P V+ + + A FL Sbjct: 65 TC-PD-CLQIREFMHPNVEYLFPVEAALLEGGDSQKKDNKKFTEARERFLALIEKKKENP 122 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 Y S +++ G I +++ ++ S G +V +I + ++ +AAN LLK Sbjct: 123 YFSPAMDRSMG-----ILTEQVVALQQKASFMPREGTRKVFIISQAEKLHPSAANKLLKL 177 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LEEPP VLF+L++ ++L+TIRSRC I+F + L LE+ Sbjct: 178 LEEPPAHVLFVLVTARPDSLLATIRSRCQEIRFQRVPAAELRTWLEE 224 >gi|227499706|ref|ZP_03929806.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227218173|gb|EEI83436.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 605 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P ++ G + + L + HA +F GE+G GK T F A + L Sbjct: 7 RQYRPKTFDQVLGQDRVVNVLKNQVKNKNFSHAYIFAGERGCGKTTCAKIFAKAINCLHP 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S P C + C K + + D + + + N + +D+IR ++ Sbjct: 67 VDGS--PCLEC--ENC----KAIDEESTIDIIEMDAASNRR---------IDDIRNLKDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I +TI SR Sbjct: 110 VIYPPNKLRYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRA 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +FN + + + LE I+ + D + A G++ A+ IL Sbjct: 170 QNFEFNKIEAKKIKEQINLILEDKNIVMENEAIDLIIRKASGAMRDALSIL 220 >gi|238920254|ref|YP_002933769.1| DNA polymerase III subunit delta', putative [Edwardsiella ictaluri 93-146] gi|238869823|gb|ACR69534.1| DNA polymerase III subunit delta', putative [Edwardsiella ictaluri 93-146] Length = 328 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 15/180 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 + L+Q+ GR HHALL G+G+ +L + A +L Q P K+ C+ Sbjct: 13 QLLAQHQ-EGRGHHALLLHAIDGMGEESLVYALARWLLCQRPQGDKS-CGECH------A 64 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + M + D+ + L P+ GK + + ++ +R++ L A G +++ I + Sbjct: 65 CRLMMAGTHPDW----HVLQPEKGK--STLGIEPVRQLIEQLQSHAQQGGAKLVWIARSE 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++ AANALLK+LEEPP + F+L + +L T+RSRC + +E + L Q Sbjct: 119 QLSEAAANALLKTLEEPPARTYFLLGTREPAQLLPTLRSRCFYLYLAPPAEGVSLRWLTQ 178 >gi|149194845|ref|ZP_01871939.1| DNA polymerase III subunits gamma and tau [Caminibacter mediatlanticus TB-2] gi|149135004|gb|EDM23486.1| DNA polymerase III subunits gamma and tau [Caminibacter mediatlanticus TB-2] Length = 487 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 21/228 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G + I + L S R+ +A LF G +G GK T ++ + S Sbjct: 7 YRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQCEKGIS 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +P C + C ++A+ H D + + + N K +++IR + Sbjct: 67 SSPCEEC--ESC-----KLANENRHIDIIEMDAASNRK---------IEDIRELIEHTKY 110 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +++ +ID V + A NALLK+LEEPP+ V FI+ + + +TI SR Sbjct: 111 KPSISRFKIFIIDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHF 170 Query: 185 KFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +FN + E L K L + + D + +A GSV ++ +L Sbjct: 171 RFNKIPEKEIESFLQKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLL 218 >gi|52424625|ref|YP_087762.1| DNA polymerase III subunit delta' [Mannheimia succiniciproducens MBEL55E] gi|52306677|gb|AAU37177.1| HolB protein [Mannheimia succiniciproducens MBEL55E] Length = 334 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 26/203 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G HHALLF EQGIG L A ++ + +P PC H+ Sbjct: 30 GYGHHALLFRAEQGIGADQLIHAVANWLM---------CQHSSPRPCG------ECHSCR 74 Query: 91 DFLYLS----YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 F + Y L P K I VD++R I +S A + + + + + +A Sbjct: 75 LFAAGNHPDVYQLAPVENK---DIGVDQVREINEKVSQRAQQNGNKAVYVQSAERLTESA 131 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANALLK+LEEP F+L + S +++TI SRC N+ SE +AL L++ + Sbjct: 132 ANALLKTLEEPRPNTYFLLNADLSSPLMTTIYSRCQVWLINTPSEQ---QALNWLQLHNY 188 Query: 207 DSKRDFVKIAAYGSVARAIKILH 229 S+ ++ A S R + LH Sbjct: 189 -SEISEIQTALRISYGRPLLALH 210 >gi|301169176|emb|CBW28773.1| DNA polymerase III, delta prime subunit [Haemophilus influenzae 10810] Length = 327 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNTLAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N AL+ LK Sbjct: 162 NLSVPNEQMALDWLK 176 >gi|284050174|ref|ZP_06380384.1| DNA polymerase III subunit delta' [Arthrospira platensis str. Paraca] Length = 335 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 19/227 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + LS+ R+ A LF G G+G+ +L R+ +L P K V Sbjct: 7 LIGQAQAVELLSRVIAQNRIAPAYLFVGIPGVGR-SLAARFFIELLLQPT-RKNLVNSSE 64 Query: 74 PDPCSPFVK---QMASHA---------LHDFLYLSYSLNPKTGKWRTV---ITVDEIRRI 118 D +K +M +H LH LS + G R I ++++R I Sbjct: 65 EDAHKQSIKHRVEMRNHPDLLWVEPTYLHQGKLLSAAEAAAAGLKRRAPPQIRLEQVREI 124 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F+S A V++++ + M AAN LLK+LEEP + VL ILI+ + ++LST+ Sbjct: 125 SQFVSRPALESLRSVVVLEAAETMAEGAANGLLKTLEEPGKSVL-ILIAPSVDSLLSTLV 183 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 SRC I F LS ++ + L Q D + + A GS +AI Sbjct: 184 SRCAKIPFFRLSNTDIIQILNQTGYGEICRHPDIIAM-AQGSPGQAI 229 >gi|257790371|ref|YP_003180977.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM 2243] gi|257474268|gb|ACV54588.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM 2243] Length = 735 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 7 RKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCECG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 + P C D C M ++ H +Y +TG V+ +R I + Sbjct: 67 PTPEPDGTC--DDCV-----MIANGEHPDVY-ELDAASRTG-------VENVREEIIGRV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 112 QFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F +S ++ L Sbjct: 172 RFDFRRISAESIVSRL 187 >gi|260767880|ref|ZP_05876814.1| DNA polymerase III delta prime subunit [Vibrio furnissii CIP 102972] gi|260615910|gb|EEX41095.1| DNA polymerase III delta prime subunit [Vibrio furnissii CIP 102972] Length = 321 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+VD+IR+ ++ +R+I+I+P + MN +AANALLK+LEEP +K +F+L++ Sbjct: 88 ISVDQIRQCNRLAQESSQLSGYRLIVIEPAEAMNESAANALLKTLEEPAEKCVFVLLTSR 147 Query: 170 SPTILSTIRSRCLSIKF 186 +L TI SRC I Sbjct: 148 INHLLPTIVSRCQQITI 164 >gi|58039074|ref|YP_191038.1| DNA polymerase III subunits gamma and tau [Gluconobacter oxydans 621H] gi|58001488|gb|AAW60382.1| DNA polymerase III subunit gamma/tau [Gluconobacter oxydans 621H] Length = 652 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 38/282 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T R L Sbjct: 40 VLARKYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTA-RIIARALN 98 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P DPC P + + D L + + +TG VD++R Sbjct: 99 CVGPDGKGGPTA----DPCGVCPNCTAILADRHPDVLEMDAAS--RTG-------VDDVR 145 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I +V +ID V ++RNA NALLK+LEEPP +V FI + + T Sbjct: 146 EIIEATRFRPMQARMKVFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVPVT 205 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDC 232 + SRC + ++ L + + G D + + AA GSV + +L Sbjct: 206 VLSRCQRFDLRRVPQSLLAGHFHNIAVKEGATLSEDALALIARAADGSVRDGLSLL---- 261 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ I+ +AD L D+ + FD L Sbjct: 262 DQAIA------------QGASDADAVADMLGLADRGLVFDLL 291 >gi|224368757|ref|YP_002602918.1| DnaX [Desulfobacterium autotrophicum HRM2] gi|223691473|gb|ACN14756.1| DnaX [Desulfobacterium autotrophicum HRM2] Length = 590 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + L SGR+ HA+L G +G GK T+ A + + P +C Sbjct: 18 VVGQPHVTTTLKNAILSGRVPHAILLTGPRGTGKTTIARILAKAMNCETGPTPTPCNICK 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C+ A A+ F S N +VD++R +R ++ ++ +++ Sbjct: 78 T--CTNIT---AGSAVDVFEIDGASNN----------SVDQVRELRENVAYMPSSSKFKI 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID V ++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 123 YIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRC 170 >gi|332041195|gb|EGI77560.1| DNA polymerase III subunits gamma and tau [Hylemonella gracilis ATCC 19624] Length = 688 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 18/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ R L Sbjct: 5 VLARKYRPRSFSEMVGQEHVVQALANALTQQRLHHAYLFTGTRGVGKTTVS-RVLAKSLN 63 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD PC P + + D+ L + N VDE++ Sbjct: 64 CIGPDGQGG----ITAQPCGTCPACLDIDAGRFVDYTELDAASN---------RGVDEVQ 110 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + G ++V MID V + A NA+LK+LEEPP+ + F+L + + T Sbjct: 111 ALLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRCL ++ + + L ++ Sbjct: 171 VLSRCLQFNLRPMAPETVLEHLTRV 195 >gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753] gi|156867274|gb|EDO60646.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753] Length = 564 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L +GR+ HA LF G +G GK T A V Sbjct: 10 RKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAV----- 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + DPC + + ++ D + + + N V+ IR +R Sbjct: 65 ---NCLSLKEGDPCGECESCVGIDNGSVMDVVEIDAASNN---------GVENIRNLREE 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T +RV +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 113 ASFTPAAAKYRVYIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRC 172 Query: 182 LSIKFNSL 189 F+ + Sbjct: 173 QRFDFHRI 180 >gi|149197778|ref|ZP_01874827.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa HTCC2155] gi|149138999|gb|EDM27403.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa HTCC2155] Length = 890 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 22/238 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + I L+ + R+ HA +F G +GIGK T +A + N + Sbjct: 8 RKWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAKAL--NCE 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +A + C C+ + ++ D + + + N +VD+IR+IR Sbjct: 66 TPRADLNPCGQ--CTNCTEITQGSSI-DVIEIDGASNN---------SVDDIRQIREGAQ 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T +++ +ID V ++ A NALLK+LEEPP + F+ + +L TI SRC Sbjct: 114 YTPARCPYKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQR 173 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 ++ + N + L E + DS + + A G + + IL D++IS Sbjct: 174 LELKPIPRNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSIL----DQMIS 227 >gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605] gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605] Length = 614 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 23/205 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E I L S R+ A LF G +G GK T R L N S+ P Sbjct: 19 QLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGK-TSSARILARSL-NCLNSEGP---- 72 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P+PC +A+ D + + + N TG VD IR + Sbjct: 73 TPEPCGTCELCTTIAAGTALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKI 215 + L L W ++++ ++I Sbjct: 184 LDALNTHL------SWIAEQEAIEI 202 >gi|157826351|ref|YP_001494071.1| DNA polymerase III subunits gamma and tau [Rickettsia akari str. Hartford] gi|157800309|gb|ABV75563.1| DNA polymerase III subunits gamma and tau [Rickettsia akari str. Hartford] Length = 509 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 15 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 74 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 75 ITENTTIKTC--EECTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 123 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 L+ ++K LE + K + + ++I AY GS A+ IL Sbjct: 183 RYDLRRLNFEEIFKLLEYIAKQENLKTDIESLRIIAYKSEGSARDAVSIL 232 >gi|308184501|ref|YP_003928634.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SJM180] gi|308060421|gb|ADO02317.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SJM180] Length = 589 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALNNQRLANAYLFSGLRGSGKTSSSRIFARALMCETGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|209695682|ref|YP_002263611.1| putative DNA polymerase III, delta' subunit [Aliivibrio salmonicida LFI1238] gi|208009634|emb|CAQ79930.1| putative DNA polymerase III, delta' subunit [Aliivibrio salmonicida LFI1238] Length = 323 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA+L G+G+ L +Y L P C+ S + + +H D Sbjct: 24 RLPHAILCAMPDGVGRDRLA-QYFADTLVCLTQGTEPCGFCH----SCGLIESGNHP--D 76 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 ++ + K+ I+VD+IR+ + ++ RVI+IDP + M +AANALL Sbjct: 77 LHWIRPEVEGKS------ISVDQIRQCNQWALESSQFNAKRVIIIDPAEKMTESAANALL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC 181 K+LE PP+ F+L++ + +L T+RSRC Sbjct: 131 KTLEAPPKNCHFVLLASSPHKLLPTVRSRC 160 >gi|121607994|ref|YP_995801.1| DNA-directed DNA polymerase [Verminephrobacter eiseniae EF01-2] gi|121552634|gb|ABM56783.1| DNA-directed DNA polymerase [Verminephrobacter eiseniae EF01-2] Length = 351 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 47/74 (63%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F TA G + +++ P + MN+ ANALLK+LEEPP ++ F+L S A Sbjct: 127 IRVEAMRDALEFAQRTAGRGRGKAVLVYPAEQMNQITANALLKTLEEPPGQIRFVLASEA 186 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 187 AHLLLPTIRSRCLG 200 >gi|325274405|ref|ZP_08140492.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51] gi|324100440|gb|EGB98199.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51] Length = 310 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + + P C+ Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTCS 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 61 ------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQYAPSRGRFKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL ++S Sbjct: 106 YLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSPER 165 Query: 194 LYKALEQL 201 + + L + Sbjct: 166 VVEHLSHV 173 >gi|296136312|ref|YP_003643554.1| DNA polymerase III, subunits gamma and tau [Thiomonas intermedia K12] gi|295796434|gb|ADG31224.1| DNA polymerase III, subunits gamma and tau [Thiomonas intermedia K12] Length = 612 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 18/202 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G + + + L+ R+HHA LF G +G+GK T+ R L Sbjct: 8 RKWRPKSFASLVGQDHVVRALTHALDHDRLHHAYLFTGTRGVGKTTVS-RILAKALNCTG 66 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD PC P ++ + D++ L + N V+++ + Sbjct: 67 PDGQGG----VTSQPCGVCPACTEIDAGRFVDYIELDAASN---------RGVEDMTTLL 113 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V MID V ++ +A NA+LK+LEEPP V F+L + + T+ S Sbjct: 114 EQAVYKPTAGRFKVYMIDEVHMLSNHAFNAMLKTLEEPPDYVKFVLATTDPQKVPVTVLS 173 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RCL + + L+Q+ Sbjct: 174 RCLQFNLKQMMPGAIVGHLQQV 195 >gi|256426033|ref|YP_003126686.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] Length = 634 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L + ++ HA LF G +G+GK T A + N + Sbjct: 9 RKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKTI--NCE 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + CN C+ F + +S +H+ S + +VD+IR + + Sbjct: 67 NLQPDGEACNQCHSCTSF-NEGSSFNIHELDAASNN------------SVDDIRTLVEQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V ++ +A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RFAPQAGKYKIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F ++ + L+++ Sbjct: 174 IFDFKRITIQDTVDHLQEI 192 >gi|330686083|gb|EGG97705.1| hypothetical protein SEVCU121_1379 [Staphylococcus epidermidis VCU121] Length = 308 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 28/171 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGE--QGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 D ++ L+ Y S ++ HA LFEG+ Q + K + F A + +CN D Sbjct: 2 DEQQQLANAYASNKLSHAYLFEGDDAQSMQKVAINF--------------AKLILCNNDE 47 Query: 77 -CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C V + +H DF+Y+S + I +++ ++ + ++ G ++V + Sbjct: 48 QCEAKVNTL-NHP--DFMYVSSE--------ESTIKKEKVEQLVHHMNQLPIEGNYKVYI 96 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ + + N++LK LEEPPQ + IL+S IL TI SRC + F Sbjct: 97 VEDFEKLTVQGENSILKFLEEPPQNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|207723526|ref|YP_002253925.1| dna polymerase-related protein [Ralstonia solanacearum MolK2] gi|206588727|emb|CAQ35690.1| putative dna polymerase-related protein [Ralstonia solanacearum MolK2] Length = 469 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 10/158 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ------- 83 ++ HA+L G+ G GK +A G + P P + C C+ F + Sbjct: 4 KLPHAILLSGQAGTGKRDFAMHFAQGLLCDTPVADGQPCQTCAA--CNWFAQGNHPDFHL 61 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 + A+ + K +I ++++R++ + + + RV+++ P+D + Sbjct: 62 VRPEAMEEAPDTEKDAEGKKKAPSKIIRMEQVRQLIEAIGVGTHRAGLRVVVLYPLDALQ 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPPQ +F+L++ IL TI SRC Sbjct: 122 TEGANALLKTLEEPPQDTVFLLVTDRIDRILPTILSRC 159 >gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. 18P13] Length = 530 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 24/185 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R FD V +Q I L SG+ HA LF G +G GK T F A + L Sbjct: 12 RTFDDVISQ-----PHITTTLKNQIQSGKTAHAYLFTGSRGTGKTTCARIFAKAINCLHA 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P + C + + +L D + + + N VD+IR +R Sbjct: 67 TDGN--PCQQCE------ICRDAEAFSLSDIIEIDAASNNG---------VDDIRELRDG 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T ++V +ID V ++++A NALLK +EEPP V FIL + + +TI SRC Sbjct: 110 AVYTPERCKYKVYIIDEVHMLSQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRC 169 Query: 182 LSIKF 186 F Sbjct: 170 QRFDF 174 >gi|258591912|emb|CBE68217.1| DNA polymerase III, delta prime subunit [NC10 bacterium 'Dutch sediment'] Length = 354 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 21/223 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----LQNPDFSKAPV 69 + G FL + +GR+ HA LF G GIGK +A + + + +F + V Sbjct: 6 VIGQARAIAFLQRALVTGRVAHAYLFSGPSGIGKRAAAIAFAQALNCEKVLSVEFGVSSV 65 Query: 70 RMCNP-------DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D C A + + L+ + G + +++IR + Sbjct: 66 PPTPNPQPPTPVDGCG---NCRACRNIANGLHPDVQVIEPDG---ATVKIEQIRTLEADA 119 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +L W+V +++ + M AANALLK+LEEP + +FIL++ +L TI SRC Sbjct: 120 ALVPYEAQWKVFILNSAERMTEQAANALLKTLEEPARGTMFILLTGTVSALLPTIVSRCQ 179 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRD-FVKIAAYGSVARA 224 + F+ L + L + G +S R + + GS+ RA Sbjct: 180 IVTFSPLPHGQIEALLRE---KGMESSRARLIASLSRGSIERA 219 >gi|225181513|ref|ZP_03734955.1| DNA polymerase III, subunits gamma and tau [Dethiobacter alkaliphilus AHT 1] gi|225167761|gb|EEG76570.1| DNA polymerase III, subunits gamma and tau [Dethiobacter alkaliphilus AHT 1] Length = 525 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 22/217 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + + L R+ HA LF G +G GK + A + + Sbjct: 7 RQWRPQFFADMVGQQHVARTLQNALEQDRLAHAYLFCGPRGTGKTSAAKILAKAI----N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P R +PC+ + + + + D + + N +DEIR +R Sbjct: 63 CEKGPSR----EPCNECAACRGIQAGRVMDVQEIDAASN---------RGIDEIRELREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V ++D V + + A NALLK+LEEPP +VLF+L + + +TI SRC Sbjct: 110 ARYSPVEVRHKVYIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRC 169 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 + F+ + ++ E+L+ + DS R A Y Sbjct: 170 QRLDFHLIGMTDIA---ERLRSVVDDSGRSIQDDALY 203 >gi|189501776|ref|YP_001957493.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus 5a2] gi|189497217|gb|ACE05764.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus 5a2] Length = 629 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L + + HA LF G +G+GK T A + N Sbjct: 9 RKYRPSVFSHVLGQAHITTTLKNAIRTNHLAHAFLFCGPRGVGKTTCARILAKAI--NCQ 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A + CN D C F ++ + + Y L+ + +V+++R + + Sbjct: 67 QLTADIEPCNACDSCKSFNQRTS--------FNIYELDAASNN-----SVEDVRSLVDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V +++ A NA LK+LEEPP +FIL + +L TI SRC Sbjct: 114 RYPPQNGAYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILSRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL 201 F + ++ + L+ + Sbjct: 174 IFDFQRIKPEDIVQQLKNV 192 >gi|220934248|ref|YP_002513147.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] gi|219995558|gb|ACL72160.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] Length = 553 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 19/204 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFEEMVGQPHVVRALSNALRDQRLHHAYLFTGTRGVGKTTVARVLAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQCS------ACREIDEGRFIDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSEN----NLYKALEQ 200 CL ++ + +L K LEQ Sbjct: 170 CLQFSLKAMPADMVGAHLKKVLEQ 193 >gi|308062041|gb|ADO03929.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Cuz20] Length = 571 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEKGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNTIT 231 >gi|88803370|ref|ZP_01118896.1| DNA polymerase III subunit gamma/tau [Polaribacter irgensii 23-P] gi|88780936|gb|EAR12115.1| DNA polymerase III subunit gamma/tau [Polaribacter irgensii 23-P] Length = 575 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + I L + + ALLF G +G+GK + A + Q Sbjct: 9 RKYRPKNFQDVVGQQAITNTLENAIKNNHLAQALLFTGPRGVGKTSCARILAKRINQ--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + DF + + L+ + +VD+IR + + Sbjct: 66 ------------------QDTENLEEEDFAFNIFELDAASNN-----SVDDIRSLTDQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V +++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 103 IPPQTGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 162 Query: 184 IKFNSL----SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++N L + + I D + A G++ A+ I D+++S Sbjct: 163 FDFKRIGVLDAKNYLKEISVKENITADDDALHIIAQKADGAMRDALSIF----DRVVS 216 >gi|290475847|ref|YP_003468739.1| DNA polymerase III subunit delta' [Xenorhabdus bovienii SS-2004] gi|289175172|emb|CBJ81975.1| DNA polymerase III, delta prime subunit [Xenorhabdus bovienii SS-2004] Length = 332 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 20/154 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HHALL +G G L + + ++ K ++ C H H Sbjct: 22 RGHHALLLHAHEGTGAGALLYGLSRWLMCQ---DKQGMKSCG-----------KCHGCHL 67 Query: 92 FLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 L ++S L P+ GK + I VD +R++ L + G +++ + + + A+ Sbjct: 68 MLAETHSDWHALAPEKGK--STIGVDAVRQLNERLYEYSQQGGAKIVWLPSAESLTDAAS 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPPQ F+L +L+T+RSRC Sbjct: 126 NALLKTLEEPPQNTYFLLQCQRPARLLATLRSRC 159 >gi|319954406|ref|YP_004165673.1| DNA polymerase iii, subunits gamma and tau [Cellulophaga algicola DSM 14237] gi|319423066|gb|ADV50175.1| DNA polymerase III, subunits gamma and tau [Cellulophaga algicola DSM 14237] Length = 617 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 27/187 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A + N D Sbjct: 9 RKYRPQTFKDVVGQQAITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILAKKI--NED 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S+ H+ D+ + + L+ + +VD+IR + + Sbjct: 67 GSQ--------------------HSDEDYAFNIFELDAASNN-----SVDDIRSLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++++A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSQSAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS 190 F ++ Sbjct: 162 FDFKRIT 168 >gi|315639690|ref|ZP_07894830.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus DSM 15952] gi|315484651|gb|EFU75107.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus DSM 15952] Length = 573 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L ++ HA LF G +G GK + +A + P C Sbjct: 18 IVGQQAITQTLKNAIVQQQISHAYLFTGPRGTGKTSAAKIFAKAINCPHSVDGEPCNEC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C K + D + + + N V+EIR IR + ++V Sbjct: 77 -DMCLSITK----GSQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTQAKYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F + + Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPKKNVIFILATTEPHKIPATIISRTQRFDFKRILPQD 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKIL 228 + + LE+ L+ M + D + + AA G + A+ IL Sbjct: 183 IVQHLEEILQEMNLSYEEDALAVIARAAEGGMRDALSIL 221 >gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] Length = 618 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + L GR+ HA LF G +G+GK + A + Sbjct: 20 VVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKALNC 79 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C D C + + D L + + N ++EIR++R Sbjct: 80 QRGPSATPCNEC--DIC----RSVTVGEDVDVLEIDGASN---------RGIEEIRQLRS 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 125 NVNIRPSRARFKIYIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 184 Query: 181 CLSIKFNSL 189 C F + Sbjct: 185 CQRFDFGGI 193 >gi|325479373|gb|EGC82469.1| DNA polymerase III, subunit gamma and tau [Anaerococcus prevotii ACS-065-V-Col13] Length = 621 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 35/244 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + L + HA +F GE+G GK T F A + L Sbjct: 7 RQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCLHP 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S P C + C K + + D + + + N + +D+IR ++ Sbjct: 67 KDGS--PCLEC--ENC----KAIDDESTIDIIEMDAASNRR---------IDDIRNLKDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I +TI SR Sbjct: 110 VIYPPNKLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKR--------DFVKIAAYGSVARAIKILHYDCD 233 + +FN + + K EQ+ I+ D K D + A G++ A+ IL D Sbjct: 170 QNFEFNKIDSS---KIKEQINII-LDDKDIKMENEAIDLIIRKANGAMRDALSIL----D 221 Query: 234 KIIS 237 ++IS Sbjct: 222 QVIS 225 >gi|227111685|ref|ZP_03825341.1| DNA polymerase III subunit delta' [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 336 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHA+L G+G +L + + ++ Q PD K+ CN M Sbjct: 18 YQAGRGHHAVLLHALPGMGDESLIYALSRWLICQQPDGMKSCGQCHSCN---------LM 68 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 + D+ + L+P+ GK + VD +R + + + G +VI + + + Sbjct: 69 TAGTHPDW----HVLSPEKGK--QSLGVDPVRDVVEKVYQHSRQGGAKVIWLAAAEQLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 AANALLK+LEEPPQ F+ +L+T+RSRCL Sbjct: 123 AAANALLKTLEEPPQNTFFLFGCREPARLLATLRSRCL 160 >gi|153872370|ref|ZP_02001285.1| DNA polymerase III [Beggiatoa sp. PS] gi|152071164|gb|EDN68715.1| DNA polymerase III [Beggiatoa sp. PS] Length = 529 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRNFPEMVGQAHVLRALTNALENNRLHHAYLFTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P C+ +++ D + + + K V++ R + Sbjct: 65 DTGITAYPCGQCS------ACREIDEGRFVDLIEVDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPPTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL L +L K +E+ I + AA GS+ A+ +L Sbjct: 170 CLQFNLKRLPLEQITQHLTKIIEEEDINYELPALRLLAQAADGSLRDALSLL 221 >gi|146307669|ref|YP_001188134.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina ymp] gi|145575870|gb|ABP85402.1| DNA polymerase III, subunits gamma and tau [Pseudomonas mendocina ymp] Length = 692 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGISSTPCGTCS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYSPSRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ + + L + Sbjct: 170 CLQFSLKNMPPERVVEHLSHV 190 >gi|315639685|ref|ZP_07894825.1| DNA-directed DNA polymerase III subunit delta' [Enterococcus italicus DSM 15952] gi|315484646|gb|EFU75102.1| DNA-directed DNA polymerase III subunit delta' [Enterococcus italicus DSM 15952] Length = 308 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 26/206 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M + F + RLF + I+K + G + HA LFEG+QG GK A + Sbjct: 1 MEETTFLATHQPRLF--KQIKKMIEH----GHLAHAYLFEGDQGTGKHEASLWIAKRL-- 52 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT---VITVDEIRR 117 F + P +PC+ H + + + +P + I V++IR+ Sbjct: 53 ---FCEEPQA---GNPCN--------HCMQ-CVRIDQGEHPNVRVVKPDGLTIKVEQIRQ 97 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ + + + +I D M+ AAN+LLK LEEP + +L ++A IL TI Sbjct: 98 LQSEFTKSGFEQKLQCFIIQEADKMSVQAANSLLKFLEEPEGTFVAMLETNALGKILPTI 157 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKI 203 +SRC + F+ LS++ L++ L++++I Sbjct: 158 QSRCQVLHFSPLSKDRLFERLQEIEI 183 >gi|313497891|gb|ADR59257.1| DnaX [Pseudomonas putida BIRD-1] Length = 689 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|88800845|ref|ZP_01116400.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297] gi|88776418|gb|EAR07638.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297] Length = 677 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V++ R + Sbjct: 65 EQGVSSKPCGQCA------SCREIAEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++S ++ + L + Sbjct: 170 CLQFNLKNMSREHIVQHLNHI 190 >gi|311279995|ref|YP_003942226.1| DNA polymerase III, delta prime subunit [Enterobacter cloacae SCF1] gi|308749190|gb|ADO48942.1| DNA polymerase III, delta prime subunit [Enterobacter cloacae SCF1] Length = 334 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y SGR HHALL + G+G L + ++ + + C+ S + Q +H Sbjct: 18 YQSGRGHHALLVQALPGMGDDALIYALCRFLMCHQPEGQKSCGKCH----SCQLMQAGTH 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y + P+ GK + +D +R + L A G +V+ I + AA Sbjct: 74 P--DY----YLVQPEKGK--NTLGIDAVRAVTEKLYERARLGGAKVVWISDAALLTEAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+ F L +L+T+RSRC Sbjct: 126 NALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 >gi|120611312|ref|YP_970990.1| DNA polymerase III subunits gamma and tau [Acidovorax citrulli AAC00-1] gi|120589776|gb|ABM33216.1| DNA polymerase III, subunits gamma and tau [Acidovorax citrulli AAC00-1] Length = 701 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 32 VLARKYRPKTFSEMVGQEHVVQALSNALVQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 91 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q D + P +C + + + D+ L + N VDE+ Sbjct: 92 QGEDGQGGITATPCGVCQ------ACRDIDAGRFVDYTELDAASN---------RGVDEV 136 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 137 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 196 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 197 TVLSRCLQFNLRPMAPETVLEHLTRV 222 >gi|189184647|ref|YP_001938432.1| DNA polymerase III subunits gamma and tau [Orientia tsutsugamushi str. Ikeda] gi|189181418|dbj|BAG41198.1| DNA polymerase III gamma and tau chains [Orientia tsutsugamushi str. Ikeda] Length = 559 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P L G E + K L+ +G + A L G +G+GK T A + LQ Sbjct: 13 RKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAARIIATTINCLQ- 71 Query: 62 PDFSKAPVRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + C C+ + + SH +N RT VD++R I Sbjct: 72 PLVTSKTIFACTK--CNSCIAIENNSHP---------DINEIDAASRT--GVDDVRTIID 118 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V +++NA NALLK LEEPP +FI + I T+ SR Sbjct: 119 DSEYKPLISKYKIFIIDEVHMLSKNAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISR 178 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 C L NN+ + L + + +F+ + A GS AI +L Sbjct: 179 CQKFDLRRLDVNNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAISLLE 231 >gi|116326905|ref|YP_796625.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332429|ref|YP_802147.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119649|gb|ABJ77692.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126118|gb|ABJ77389.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 487 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 SG++ HA +F G +G+GK T+ A + +NP + P C+ C+ + ++S Sbjct: 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCRNP-INNEPCNECSS--CTEITQGISS-- 90 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D L + + N ++ IR +R + G ++V +ID V + + N Sbjct: 91 --DVLEIDAASNR---------GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFN 139 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEPP ++FIL + I TI SRC Sbjct: 140 ALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 >gi|312131704|ref|YP_003999044.1| DNA polymerase iii gamma/tau subunits-like protein [Leadbetterella byssophila DSM 17132] gi|311908250|gb|ADQ18691.1| DNA polymerase III gamma/tau subunits-like protein [Leadbetterella byssophila DSM 17132] Length = 367 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 27/212 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-----------LQNPDF 64 G E+ + L +G + HALLF+G+ G + A +V Q P Sbjct: 8 GLEETKGRLKDAVRTGHLAHALLFDGKPGGAALPMALALATYVNCEQSGGEDACGQCPAC 67 Query: 65 SKAPVRMCNPD-----PCSPFVKQMASHALHDFL-------YLSYS--LNPKTGKWRTVI 110 SK ++ +PD P + K ++ + L ++ Y +Y+ LN G + I Sbjct: 68 SKYD-KLIHPDLTFTFPTAGGKKVLSENFLGEWRNFVKEDPYGTYTDWLN-YIGIKQGNI 125 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 V+E R+I LSL + G +++++I V+ M AANALLK LEEPP K LF+L++ Sbjct: 126 PVEESRQIIQNLSLKSYEGGYKIVLIWNVESMAAPAANALLKILEEPPAKTLFLLVTSDY 185 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 +L+TI+SR + L+E + L Q + Sbjct: 186 NRLLATIQSRVQRVAVRDLNEEEMVDYLTQYR 217 >gi|260913638|ref|ZP_05920114.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC 43325] gi|260632177|gb|EEX50352.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC 43325] Length = 741 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 19/201 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQSHILIALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V +PC K + D + + + K V++ R + Sbjct: 63 ------NCVNGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC+ +L + + + LE Sbjct: 168 SRCMQFHLKALEQTQIAQHLE 188 >gi|326317366|ref|YP_004235038.1| DNA polymerase III subunits gamma and tau [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374202|gb|ADX46471.1| DNA polymerase III, subunits gamma and tau [Acidovorax avenae subsp. avenae ATCC 19860] Length = 673 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALIQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q D + P +C + + + D+ L + N VDE+ Sbjct: 65 QGEDGQGGITATPCGVCQ------ACRDIDAGRFVDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRV 195 >gi|325845435|ref|ZP_08168728.1| putative DNA polymerase III, delta' subunit [Turicibacter sp. HGF1] gi|325488541|gb|EGC90957.1| putative DNA polymerase III, delta' subunit [Turicibacter sp. HGF1] Length = 330 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 +++ +FL Y R+ HA + EG +G+GK + +A +L ++ D R C Sbjct: 11 QQEVVRFLINSYQKNRLVHAYILEGPKGVGKLFVAKNFAKMLLCESDDRICGTCRHC--- 67 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 QM H +Y+ + P I ++I+ ++ S A +V + Sbjct: 68 -------QMIESDGHVNVYM---IRPDGNS----IKKEQIQELQSEFSKMAAEDCAKVYI 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 I+ D M+ +AAN+LLK LEEP I+++ +L TIRSR + + F SLS +L Sbjct: 114 IEDADKMSVSAANSLLKFLEEPKANTYAIMLTQNKQKLLPTIRSRSVILSFKSLSNESL 172 >gi|293374640|ref|ZP_06620955.1| putative DNA polymerase III, delta' subunit [Turicibacter sanguinis PC909] gi|292646730|gb|EFF64725.1| putative DNA polymerase III, delta' subunit [Turicibacter sanguinis PC909] Length = 330 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD 75 +++ +FL Y R+ HA + EG +G+GK + +A +L ++ D R C Sbjct: 11 QQEVVRFLINSYQKNRLVHAYILEGPKGVGKLFVAKNFAKMLLCESDDRICGTCRHC--- 67 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 QM H +Y+ + P I ++I+ ++ S A +V + Sbjct: 68 -------QMIESDGHVNVYM---IRPDGNS----IKKEQIQELQSEFSKMAAEDCAKVYI 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 I+ D M+ +AAN+LLK LEEP I+++ +L TIRSR + + F SLS +L Sbjct: 114 IEDADKMSVSAANSLLKFLEEPKANTYAIMLTQNKQKLLPTIRSRSVILSFKSLSNESL 172 >gi|160944240|ref|ZP_02091469.1| hypothetical protein FAEPRAM212_01749 [Faecalibacterium prausnitzii M21/2] gi|158444422|gb|EDP21426.1| hypothetical protein FAEPRAM212_01749 [Faecalibacterium prausnitzii M21/2] Length = 321 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G+ +++ + Q + R+ H++L GE G+G A L P A + Sbjct: 5 RMEGNAELKTSVQQMLATRRLTHSVLLVGEAGLGTGFAARCIAADYLY-PAGGAAAEALL 63 Query: 73 NPDPCSPFVK--QMASHALHDFLY---LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + C K + S + + +S S GK+ V ++ +R + T+ Sbjct: 64 RGECCRAVAKAGKRDSGTVETGIVREAISVSGMGSGGKY----LVGQVTAMRSEIFNTSL 119 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 + R +++ V+ MN +ANALLK +EEPP+ VLF+L + + ++L TIRSRC+S Sbjct: 120 SAEGRAVLLYHVERMNEESANALLKVMEEPPEGVLFLLTADSLASVLPTIRSRCVSFAVA 179 Query: 188 SLS 190 +S Sbjct: 180 PVS 182 >gi|255327687|ref|ZP_05368753.1| DNA polymerase III subunit delta [Rothia mucilaginosa ATCC 25296] gi|255295361|gb|EET74712.1| DNA polymerase III subunit delta [Rothia mucilaginosa ATCC 25296] Length = 380 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%) Query: 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQM-AS 86 + R HA LF G G +A +L + PD R C C V M S Sbjct: 22 AANRPTHAWLFTGATGAPHRESAKIFAAALLCEQPDPQN---RGCGQ--CKGCVTVMNGS 76 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA DF + S T I++DE R + G WRVI+++ + M Sbjct: 77 HA--DFTHFSTEA--------THISIDEARELVMKAQDRPTVGRWRVILVEDTERMPERT 126 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +N LLK++EEPP +++L + + +L TIRSRC ++ ++ +++ L Sbjct: 127 SNVLLKAIEEPPPHTIWLLTAPSPTDVLVTIRSRCRPVQLPVPTDAQVHEYL 178 >gi|257066283|ref|YP_003152539.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii DSM 20548] gi|256798163|gb|ACV28818.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii DSM 20548] Length = 626 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 40/298 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + L + HA +F GE+G GK T F A + L Sbjct: 7 RQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCLHP 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S P C + C K + + D + + + N + +D+IR ++ Sbjct: 67 VDGS--PCLEC--ENC----KAIDDESTIDIIEMDAASNRR---------IDDIRNLKDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I +TI SR Sbjct: 110 VIYPPNKLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSRA 169 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSK-------RDFVKIAAYGSVARAIKILHYDCDK 234 + +FN + + K EQ+ I+ D D + A G++ A+ IL D+ Sbjct: 170 QNFEFNKIEKG---KIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSIL----DQ 222 Query: 235 IISSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 ++S + E L + ++ + + S +QK A ++ F L+E KS K Sbjct: 223 VLSYDTKSYKLADVENLLGVVDFYDIDKLTNSIFSFNQKKALSYI--FSLRESNKSNK 278 >gi|29840095|ref|NP_829201.1| DNA polymerase III subunits gamma and tau [Chlamydophila caviae GPIC] gi|29834443|gb|AAP05079.1| DNA polymerase III, gamma subunit [Chlamydophila caviae GPIC] Length = 446 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 18/198 (9%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P + G + + L R+ HA LF G +G GK TL +A + Sbjct: 10 SRKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKAL---- 65 Query: 63 DFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P R + +PC+ K+++S D + + + + +++IR+I Sbjct: 66 ---NCPERTSDHEPCNHCCICKEISSGTSLDVIEIDGASHRG---------IEDIRQINE 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI SR Sbjct: 114 TVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILSR 173 Query: 181 CLSIKFNSLSENNLYKAL 198 C + + E + + L Sbjct: 174 CQKMYLKRIPETMIVEKL 191 >gi|220905406|ref|YP_002480718.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869705|gb|ACL50040.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 741 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 27/224 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVR 70 ++ G + ++ LS+ R A L G +G+GK T+ F A + +P Sbjct: 17 QVAGQDMVKAVLSRAAAEDRPAAAYLLSGTRGVGKTTIARIFAKALNCEHSP-------- 68 Query: 71 MCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 P+PC+ + + + +H D + + N +V++ R +R + A Sbjct: 69 --GPEPCNECAQCRKITQGVHVDVTEIDGASN---------NSVEDARSLRETIGYAAME 117 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++V +ID + RNA NALLK+LEEPP++V+FI + + TI SRC F Sbjct: 118 GRYKVFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQHFVFRH 177 Query: 189 LSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 LS++ +L L + + DS + A GSV ++ +L Sbjct: 178 LSKDALVEHLSGVLRKENVTFEDSAVRLLARRAAGSVRDSMSLL 221 >gi|104780939|ref|YP_607437.1| DNA polymerase III subunits gamma and tau [Pseudomonas entomophila L48] gi|95109926|emb|CAK14631.1| DNA polymerase III, tau and gamma subunits [Pseudomonas entomophila L48] Length = 684 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|169627595|ref|YP_001701244.1| DNA polymerase III subunit delta' [Mycobacterium abscessus ATCC 19977] gi|169239562|emb|CAM60590.1| Probable DNA polymerase III, delta' subunit [Mycobacterium abscessus] Length = 401 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 19/172 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 +GRM HA LF G G G++ +A + ++ D + C C P MA Sbjct: 30 AGRMTHAWLFTGPPGSGRSVAALCFAAALQCESEDVAG-----CGA--CRPCTTTMAGTH 82 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + L+ I VDE+R I +TG W V++I+ D + A N Sbjct: 83 ADVRRVVPEGLS---------IGVDEMRAIVQAAWRRPSTGRWLVVLIEDADRLTEGAGN 133 Query: 149 ALLKSLEEPPQKVLFILISHA-SPTILS-TIRSRCLSIKFNSLSENNLYKAL 198 LLK +EEPP + +F+L + + P +S T+RSRC + + S + + L Sbjct: 134 VLLKVVEEPPPRTVFLLCAPSVDPEDISITLRSRCRHVALVTPSVAAIAQVL 185 >gi|33241267|ref|NP_876209.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 559 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 L G + I L Q S R+ A LF G +G GK T R L Q+ + AP Sbjct: 20 LVGQDSIVATLKQALISNRIAPAYLFCGPRGTGK-TSSARILARSLNCQQSEKPTIAPCC 78 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 CN K++ D + + + N TG VD IR + Sbjct: 79 QCN------LCKEIGKGTALDIIEIDAASN--TG-------VDNIRELIERSQFAPVQAR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 W+V +ID ++ A NALLK+LEEPP + +F+L + +L TI SRC F Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDF 179 >gi|241711081|ref|XP_002413415.1| replication factor C, subunit RFC4, putative [Ixodes scapularis] gi|215507229|gb|EEC16723.1| replication factor C, subunit RFC4, putative [Ixodes scapularis] Length = 287 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 33/190 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 12 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D S + + L +Y P +G+ Sbjct: 72 ETGITSKP---CGLDAASNRGVEEMTQLLEQAVY-----APSSGR--------------- 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 109 ----------YKVYMIDEVHMLTGHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 158 Query: 181 CLSIKFNSLS 190 CL ++ Sbjct: 159 CLQFNLKQMT 168 >gi|26990960|ref|NP_746385.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida KT2440] gi|24985983|gb|AAN69849.1|AE016623_11 DNA polymerase III, gamma and tau subunits [Pseudomonas putida KT2440] Length = 691 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|317488829|ref|ZP_07947360.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|316912058|gb|EFV33636.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] Length = 506 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 7 RKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCECG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 + P C D C M ++ H +Y +TG V+ +R I + Sbjct: 67 PTPEPDGTC--DDCV-----MIANGEHPDVY-ELDAASRTG-------VENVREEIIGRV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 112 QFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F +S ++ L Sbjct: 172 RFDFRRISAESIVSRL 187 >gi|91214676|ref|ZP_01251649.1| DNA polymerase III subunit gamma/tau [Psychroflexus torquis ATCC 700755] gi|91187103|gb|EAS73473.1| DNA polymerase III subunit gamma/tau [Psychroflexus torquis ATCC 700755] Length = 614 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 27/198 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK + A + Q Sbjct: 9 RKYRPETFEDVVGQKAITNTLLNAINNDHLAQALLFTGPRGVGKTSCARILAKKINQ--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + DF + + L+ + +VD+IR + + Sbjct: 66 -------------------EATDNENTDFAFNIFELDAASNN-----SVDDIRNLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + TG ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQTGKYKVYIIDEVHMLSQQAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQL 201 F ++ ++ + L ++ Sbjct: 162 FDFKRITVGDIKEHLAKI 179 >gi|149926478|ref|ZP_01914739.1| DNA-directed DNA polymerase [Limnobacter sp. MED105] gi|149824841|gb|EDM84055.1| DNA-directed DNA polymerase [Limnobacter sp. MED105] Length = 318 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 93 LYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L L +++ KTG K I +D++R ++ + + ++ G R +++ P D MN N ANALL Sbjct: 84 LELGFNVEVKTGVKPSQDIRIDDVRDLQNYFNTASSRGASRYVVVYPFDNMNANTANALL 143 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC--LSIKFNSLSE 191 K+LEEP + F+L+ +L TIRSRC L++ +++E Sbjct: 144 KTLEEPANGLRFVLVGSRVDKLLPTIRSRCQELTMPMPAIAE 185 >gi|148546837|ref|YP_001266939.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida F1] gi|148510895|gb|ABQ77755.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Pseudomonas putida F1] Length = 692 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|217033792|ref|ZP_03439218.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10] gi|216943841|gb|EEC23281.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10] Length = 573 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|124515020|gb|EAY56531.1| DNA polymerase III [Leptospirillum rubarum] Length = 342 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 21/170 (12%) Query: 38 LFEGEQGIGKATLGFRYAGHVL----QNPDFSKAPVRMCNPDPCSPFVKQMASHALH--D 91 LF G +GIGK ++ +L +PD + P C+ F K + ++H D Sbjct: 35 LFHGPRGIGKKKAALLWSRLLLCTRPGHPDNTLCPS-------CAQFDK-FSPESMHHPD 86 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L LS P G T I++DE RR+ LS G R +++ + +AAN+LL Sbjct: 87 ILQLS----PGEG---TTISIDETRRLISELSNAPLLGSRRTAILEEAHLLTESAANSLL 139 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 K+LE+PP+K L IL++ +L T+ SR +S+ F+ + + + L L Sbjct: 140 KTLEDPPEKTLIILVTPYPDNLLPTLLSRTVSVGFSGCTREEMEEYLAAL 189 >gi|119469413|ref|ZP_01612352.1| putative DNA polymerase III delta' subunit [Alteromonadales bacterium TW-7] gi|119447277|gb|EAW28546.1| putative DNA polymerase III delta' subunit [Alteromonadales bacterium TW-7] Length = 304 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 22/196 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QN-------PDFSKAPVR 70 + ++ L+Q + R HHA LF G G+GK L A +L QN P+ AP Sbjct: 8 ETQQHLAQSFRGQRFHHAQLFCGPVGVGKFALSDELANALLCQNITQQTAAPNSILAPCG 67 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C CS + +H + G+ I VD+IR I F++ +A Sbjct: 68 QC--KSCS--LNLAGTHP-------DKRITQVDGQ---SIGVDDIRAISDFMNHSAAQNG 113 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V++I+ + M AANALLK+LEEP IL + + +TI SRC S Sbjct: 114 NKVVVIENCEKMTMAAANALLKTLEEPSNSRFLILTTSQPAQLPATILSRCAKTDVKVTS 173 Query: 191 ENNLYKALEQLKIMGW 206 + LE L+I + Sbjct: 174 TKLAQQWLESLQIQNY 189 >gi|254458186|ref|ZP_05071612.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales bacterium GD 1] gi|207085022|gb|EDZ62308.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales bacterium GD 1] Length = 585 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + I + LS S R+ HA LF G +G GK + +A ++ Sbjct: 7 VLARKYRPSNFDELIGQDTIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S P +C C ++A H D + + + + K +D+IR + Sbjct: 67 EQGMSHEPCGVCQN--C-----KLAVENRHMDIVEMDAASSRK---------IDDIRDLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID V + + A NALLK+LEEPP V FIL + + +TI S Sbjct: 111 EQTKYRPASARFKIFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILS 170 Query: 180 RCLSIKFNSLS 190 R +F S++ Sbjct: 171 RTQHFRFKSIA 181 >gi|307262309|ref|ZP_07543957.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867972|gb|EFM99800.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 310 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R+ L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVRQANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|260221001|emb|CBA29129.1| hypothetical protein Csp_A10600 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 682 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G + + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQDHVVQALTNALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 Q D + P +C C+ + S D+ L + N VDE+ Sbjct: 65 QGVDGQGGITATPCGVCQA--CT----DIDSGRFVDYTELDAASN---------RGVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QALLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ + + L ++ Sbjct: 170 TVLSRCLQFNLRPMAPETIREHLTKV 195 >gi|238751045|ref|ZP_04612541.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380] gi|238710735|gb|EEQ02957.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380] Length = 651 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGICA------NCQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CL 182 CL Sbjct: 170 CL 171 >gi|209527774|ref|ZP_03276268.1| DNA polymerase III, delta prime subunit [Arthrospira maxima CS-328] gi|209491807|gb|EDZ92168.1| DNA polymerase III, delta prime subunit [Arthrospira maxima CS-328] Length = 334 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 19/227 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + LS+ R+ A LF G G+G++ + +LQ K + Sbjct: 7 LIGQPQAIELLSRVIAQNRIAPAYLFVGIPGVGRSLAAQYFIELLLQK--GRKNLLNSSE 64 Query: 74 PDPCSPFVK---QMASHA---------LHDFLYLSYSLNPKTGKWRTV---ITVDEIRRI 118 D +K +M +H LH LS + +G R I +D++R I Sbjct: 65 EDAHKQSIKHRVKMRNHPDLLWVEPTYLHQGKLLSAAEAAASGLKRRAPPQIRLDQVREI 124 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F+S A V++++ + M AAN LLK+LEEP + VL ILI+ + ++LST+ Sbjct: 125 SQFVSRPALESLRSVVVLEAAETMAEGAANGLLKTLEEPGKSVL-ILIAPSVDSLLSTLV 183 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 SRC I F LS ++ + L Q K G + + A GS +AI Sbjct: 184 SRCAKIPFFRLSNTDIIQILTQ-KGYGEICRHAEIMAMAQGSPGQAI 229 >gi|51474034|ref|YP_067790.1| DNA polymerase III subunits gamma and tau [Rickettsia typhi str. Wilmington] gi|51460346|gb|AAU04309.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 507 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 125/303 (41%), Gaps = 56/303 (18%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 14 RKYRPNNFTELQGQEVLVKILSYTILNDRLVGGYLLTGIRGVGKTTSARIIAKAVNCSAL 73 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ V +H D + + + KT ++D+IRRI Sbjct: 74 ITENMTIKTC--EKCTNCV-SFNNHNHPDIIEIDAA--SKT-------SIDDIRRIIESA 121 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP V+FI + + STI SRC Sbjct: 122 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTIISRCQ 181 Query: 183 SIKFNSLS-------------ENNLYKALEQLKIMGWDSK---RDFVKIAAYGSVARAIK 226 LS + NL +E L+I+ S+ RD V I + A Sbjct: 182 RYDLRRLSFEEIFKLLKYITKQENLIADIEALRIIAHKSEGSARDAVSILDQAASMSA-- 239 Query: 227 ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D IISS QI +++L + F++EFI K I K Sbjct: 240 ----KSDNIISS------------------QIINQMLGL---VDASFILEFIEKIISKET 274 Query: 287 KAA 289 + A Sbjct: 275 EKA 277 >gi|68249055|ref|YP_248167.1| DNA polymerase III subunit delta' [Haemophilus influenzae 86-028NP] gi|68057254|gb|AAX87507.1| DNA polymerase III, delta' subunit [Haemophilus influenzae 86-028NP] Length = 327 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRSNTYFLLQTDSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 162 NLSVPNEQMAVDWLK 176 >gi|296131637|ref|YP_003638884.1| DNA polymerase III, delta prime subunit [Thermincola sp. JR] gi|296030215|gb|ADG80983.1| DNA polymerase III, delta prime subunit [Thermincola potens JR] Length = 324 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 19/218 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q++ GHE + K L + ++ HA L G +G+GK T+ +A Sbjct: 3 QQIVGHETVIKTLINALNNKKVAHAYLLTGPRGLGKETIARTFAQAFF------------ 50 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + P + L + Y + + TG I +++IR I+ G Sbjct: 51 CEREESIPCDQCSNCKRLQEGNYPDFHIIEPTG---NAIKIEQIRNIQKSCQYKPYEGIG 107 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV +I + M +AN LLK LEEP + +F+L + +L T+ SRC + + Sbjct: 108 RVYLIKNAEAMTVESANCLLKVLEEPNENTVFLLTAENPYMLLPTVLSRCQRLNLRPVPP 167 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIA-AYGSVARAIKIL 228 + L L + G DS+R V A + G+ +A+ ++ Sbjct: 168 SVLADWLIK---QGLDSERARVISALSDGAPGKALNLI 202 >gi|170722750|ref|YP_001750438.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida W619] gi|169760753|gb|ACA74069.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida W619] Length = 689 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++S + + L Sbjct: 170 CLQFSLKNMSPERVVEHL 187 >gi|227326857|ref|ZP_03830881.1| DNA polymerase III subunit delta' [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 336 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHA+L G+G +L + + ++ Q PD K+ CN M Sbjct: 18 YQAGRGHHAVLLHALPGMGDESLIYALSRWLICQRPDGMKSCGQCHSCN---------LM 68 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 + D+ + L+P+ GK + VD +R + + + G +VI + + + Sbjct: 69 TAGTHPDW----HVLSPEKGK--QSLGVDPVRDVVEKVYQHSRQGGAKVIWLASAEQLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 AANALLK+LEEPPQ F+ +L+T+RSRCL Sbjct: 123 AAANALLKTLEEPPQNTFFLFGCREPARLLATLRSRCL 160 >gi|34558379|ref|NP_908194.1| DNA polymerase III subunits gamma and tau [Wolinella succinogenes DSM 1740] gi|34484098|emb|CAE11094.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Wolinella succinogenes] Length = 544 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P + L G + I + LS SGR+ HA LF G +G GK + F A + Q P Sbjct: 9 YRPTRFEDLIGQDPISQTLSLALDSGRLSHAYLFSGLRGSGKTSSARIFSKALNCAQGP- 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P +C + C + H D + + + + K R D I + +Y + Sbjct: 68 -SSTPCDVC--ENC--LAAKEGRHM--DIIEMDAASSRKIDDIR-----DLIEQTKYHPA 115 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 116 M----GRFKIFIIDEVHMLTKEAFNALLKTLEEPPPYVKFILATTDPLKLPATILSRTQH 171 Query: 184 IKFNSLSENNLYKALEQL 201 +F ++ ++ ++++ Sbjct: 172 FRFKKIAHRDVIAHIQKI 189 >gi|237746051|ref|ZP_04576531.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] gi|229377402|gb|EEO27493.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] Length = 353 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 32/206 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-- 59 ++ +PVY +E+ S ++ HALLF G G G T +A +L Sbjct: 4 VENTENPVYPWHTANWRHLERMKS------KLPHALLFYGPAGTGVETFAETFAKAMLCE 57 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMA----SHALHDFLYLSYSLN----------PKTG 104 + PD C + Q A L + L ++ +N P G Sbjct: 58 NRQPDG-----HACGACHSCHWFSQYAHPDYRQILPETLEIARGINQADKPVSDDEPAAG 112 Query: 105 KWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 K I +D++R + F++++ + G R++ + P + M ++NALLK LEEPP Sbjct: 113 KSSKEPSRKIGIDKVRSLADFINVSTHRGGLRIVFVYPAEAMTSESSNALLKMLEEPPAN 172 Query: 161 VLFILISHASPTILSTIRSRCLSIKF 186 LFIL + +L TI SRC + F Sbjct: 173 TLFILATSHLDALLPTIVSRCSKLAF 198 >gi|114778107|ref|ZP_01452994.1| DNA polymerase III subunits gamma and tau [Mariprofundus ferrooxydans PV-1] gi|114551525|gb|EAU54079.1| DNA polymerase III subunits gamma and tau [Mariprofundus ferrooxydans PV-1] Length = 561 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L SG + HA L G +G+GK T+ A + Sbjct: 5 VLARRWRPQQFSDLVGQDVVVRTLKNALASGNLAHAYLLCGIRGVGKTTIARLMA--MAA 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P+ P + A + D +L+ + + VD++R I Sbjct: 63 NCE---------QPEDGEPCGRCKACRGIAD----GSNLDVQEMDAASHTGVDDVREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ RV +ID ++++A NALLK+LEEPP VLFIL + S + T+RSR Sbjct: 110 GVRYPPSSLKTRVYIIDEAHMLSKSAFNALLKTLEEPPAHVLFILATTESEKLPVTVRSR 169 Query: 181 C 181 C Sbjct: 170 C 170 >gi|315633993|ref|ZP_07889282.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis ATCC 33393] gi|315477243|gb|EFU67986.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis ATCC 33393] Length = 681 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 65 VNGVTAEPCGVCE------HCKAIEEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVLGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 C+ +L ++ + + L Sbjct: 170 CMQFHLKALEQSQIAEHL 187 >gi|308063496|gb|ADO05383.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Sat464] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEKGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSTLNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|304312973|ref|YP_003812571.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium HdN1] gi|301798706|emb|CBL46939.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium HdN1] Length = 669 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFSEMVGQEHVLRAMINALDQQRLHHAYLFTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EKGVTSQPCGTCS------ACREIDEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYTPTRGRYKVYLIDEVHMLSGHSFNALLKTLEEPPEHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ + + L+++ Sbjct: 170 CLQFSLKAMLPERIVQHLKKV 190 >gi|311106020|ref|YP_003978873.1| DNA polymerase III subunit delta' [Achromobacter xylosoxidans A8] gi|310760709|gb|ADP16158.1| DNA polymerase III, delta' subunit [Achromobacter xylosoxidans A8] Length = 363 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 20/189 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFV--------- 81 R HA L G GIGK A +L + PD A C C+ F Sbjct: 37 RFAHAWLIHGLAGIGKLDFAVAAAASLLCETPDNGLA-CGHCAA--CAWFASGNHPDLRR 93 Query: 82 ---KQMASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVI 134 + +A D S P TG + I +D+IR + + + + G WRV Sbjct: 94 IRPEAVAVEEGADAAEPSEDAEPATGTAKRAPSKEIRIDQIRSLESWFNTATHRGGWRVA 153 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 ++ P +N ++NALLK LEEPP +F+L++ A +L T+ SRC + + + Sbjct: 154 LLYPAHALNVVSSNALLKVLEEPPPHTVFLLVADAPDRLLPTLVSRCRRLPLPAPDSDTA 213 Query: 195 YKALEQLKI 203 + L + + Sbjct: 214 LQWLREQSV 222 >gi|226944093|ref|YP_002799166.1| DNA polymerase III subunits gamma and tau [Azotobacter vinelandii DJ] gi|226719020|gb|ACO78191.1| DNA-directed DNA polymerase III, gamma and tau subunits [Azotobacter vinelandii DJ] Length = 694 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S +P C+ +++ D + + + K V++ R + Sbjct: 65 ETGISSSPCGQCS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL S+ + + L + Sbjct: 170 CLQFALKSMPPERVVEHLSHV 190 >gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] Length = 636 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 19/191 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G ++ L ++ HA LF G +G GK + +A L N Sbjct: 10 RKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAK--LLN-- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++P+ +PC V S+ D + + + N VD+IR +R ++ Sbjct: 66 -CQSPIDY---NPCGECVCCQDSNT--DIIEMDAASNNG---------VDDIRDLREKVN 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID V ++ A NALLK+LEEPP ++FIL + I +TI SRC Sbjct: 111 YAPAFGKKKVYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQR 170 Query: 184 IKFNSLSENNL 194 F +S++++ Sbjct: 171 YDFRRISQDDI 181 >gi|134094621|ref|YP_001099696.1| DNA polymerase III subunit delta' [Herminiimonas arsenicoxydans] gi|133738524|emb|CAL61569.1| DNA polymerase III, delta prime subunit [Herminiimonas arsenicoxydans] Length = 343 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 32/266 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCS-------PFVKQ 83 R+ HA+LF G +GIGK A +L + P+ C C P ++ Sbjct: 21 RLPHAILFHGPEGIGKTAFAEACAQSLLCETPNTDGHACGTCAA--CGWFGQYSHPDYRR 78 Query: 84 MASHALHDFLYLSYSLNPK--TGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIM 135 + L D T K ++ I +D+IR + F++++ + RV+ Sbjct: 79 VRPEILDDGESAEGEEAEAGDTKKSKSTKAPSKEIKIDQIRALSDFMNISTHRSGMRVVT 138 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC--LSIKFNSLSENN 193 + P + +N AAN+LLK LEEPP +F+L +++ +L TI SRC ++ E Sbjct: 139 LYPAEALNTAAANSLLKMLEEPPPNTMFLLATNSIDRLLPTILSRCRKFALAMPGAEETL 198 Query: 194 LYKALEQLKIM-GWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL 252 + +Q+K W +++ +AA S + + + ++ + P + AL Sbjct: 199 QWLQAQQVKDADSWLAEQGGAPLAALASSQAGAR-------ETLDEFLQQLAQPGVDAAL 251 Query: 253 QKMQQI----ADELLSQDQKIAFDFL 274 + +++ EL++ Q+ +D L Sbjct: 252 KTAERLQKTPVTELVAWLQRWLYDVL 277 >gi|323488472|ref|ZP_08093718.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis MPA1U2] gi|323397864|gb|EGA90664.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis MPA1U2] Length = 577 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 32/286 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +++ L + HA LF G +G GK + +A + + Sbjct: 8 RVYRPQSFSEMTGQTHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKAL----N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP +PC+ + + + D + + N + V+E+R I Sbjct: 64 CEQAPT----AEPCNECTSCRSINEGSNTDVIEFDAASNSR---------VEEMREIIEK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +++ +ID V ++ +A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VRFSPANSRFKIYIIDEVHMLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRC 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F S ++ + + + L KI + + AA G + A+ +L D+++S Sbjct: 171 QRFDFKSHTQVDIVSRMVEVLTDAKIPYNEQVLKIIAQAAAGGMRDALSLL----DQVVS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 D + + + Q IA+ LL++D A L + + Sbjct: 227 FSGDEMTVEDALLVTGSVSQDVFYGIAEALLAKDIGQALTLLEQLV 272 >gi|308270884|emb|CBX27494.1| hypothetical protein N47_H23160 [uncultured Desulfobacterium sp.] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 19/180 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L+ +GR+ HA+L G +G GK T+ A + ++ Sbjct: 20 RKYRPQNFDTVVGQKHVTQTLANAISTGRVAHAVLLSGPRGTGKTTVARILAKAMNCIEG 79 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + +P +C C+ ++ + D L + + N V+ +R +R Sbjct: 80 P--TPSPCNVCRS--CT----EITIGSCVDVLEIDGASNN---------GVENVRDLRDN 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID V ++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 123 IKYKPAYSRYKIYIIDEVHMLSTQAFNALLKTLEEPPPHVMFIFATTEPHKIPVTILSRC 182 >gi|163788745|ref|ZP_02183190.1| DNA polymerase III subunit gamma/tau [Flavobacteriales bacterium ALC-1] gi|159875982|gb|EDP70041.1| DNA polymerase III subunit gamma/tau [Flavobacteriales bacterium ALC-1] Length = 575 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 37/239 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A Sbjct: 9 RKYRPQTFKDVVGQQAITNTLLNAIKNNHLAQALLFTGPRGVGKTTCARILA-------- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +M N D + DF + + L+ + +VD+IR + + Sbjct: 61 ------KMINSDG--------NTSEDEDFAFNIFELDAASNN-----SVDDIRSLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPKHCIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNL-----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + Y A EQ + D + A G++ A+ I D+++S Sbjct: 162 FDFKRITVTDAKEYLKYIAKEQ-DVTAEDDALHIIAQKADGAMRDALSIF----DRVVS 215 >gi|113475257|ref|YP_721318.1| DNA polymerase III subunit delta' [Trichodesmium erythraeum IMS101] gi|110166305|gb|ABG50845.1| DNA polymerase III, delta prime subunit [Trichodesmium erythraeum IMS101] Length = 320 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 19/224 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKA-------TLGFRYAGHVLQNPDFSK 66 + G + L+Q R+ A LF G G+G+A L F + N K Sbjct: 8 IIGQNQAIELLTQAMAHQRIAPAYLFAGPPGVGRALTAQCFIQLLFSHTNSFPPNSSSLK 67 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLS 123 + ++ N P + + LH S + G R I ++++R I FLS Sbjct: 68 SRIQKRN----HPDLLWLEPTYLHQGKLFSATEAAAAGVKRKSPPQIRLEQVRDIGQFLS 123 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 V+++ + M NAAN LLK LEEP ++ ILI+ +L T+ SRC Sbjct: 124 RPPLQAARAVVVLQQAETMGENAANGLLKILEEPGKRATLILIAPGVDALLPTLVSRCQR 183 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARAI 225 I F L++ N+ LE+ +G+ D ++ A GS AI Sbjct: 184 IPFYRLTQENMKLVLEK---VGYGKILDQPEVMEMAQGSPGEAI 224 >gi|317178927|dbj|BAJ56715.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F30] Length = 568 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPTTILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|317012528|gb|ADU83136.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Lithuania75] Length = 579 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCETGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|297182771|gb|ADI18925.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 557 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 25/231 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ +L G E I + + + ++ +A LF G +G+GK T+ R L + S Sbjct: 14 PLTFDQLIGQEVIAETIINSIKANKVPNAYLFNGIRGVGKTTIA-RIVAKAL---NCSNG 69 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 ++C + C + + + + D L + + KTG VD++R + F Sbjct: 70 LDKICKNNLCDN-CEGITNSSHIDVLEMDAA--SKTG-------VDDVRDLIEFSRYGPT 119 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ-----KVLFILISHASPTILSTIRSRCL 182 T +++ +ID V +++ A NALLK+LEEPPQ + FI + I T+ SRC Sbjct: 120 TSKYKIFIIDEVHMLSKQAFNALLKTLEEPPQYENGGGLKFIFATTEIKKIPITVVSRCQ 179 Query: 183 SIKFNSLSENNLYKALEQLK-----IMGWDSKRDFVKIAAYGSVARAIKIL 228 + + L++ ++++K + D+ R +KI+ GSV A+ +L Sbjct: 180 RFDLSRVKSTELFEFIKKIKDQEKGKVTDDALRLIIKISE-GSVRDALSLL 229 >gi|260580482|ref|ZP_05848310.1| DNA polymerase III subunit delta' [Haemophilus influenzae RdAW] gi|1074027|pir||D64069 DNA-directed DNA polymerase III delta' chain homolog - Haemophilus influenzae (strain Rd KW20) gi|260092824|gb|EEW76759.1| DNA polymerase III subunit delta' [Haemophilus influenzae RdAW] Length = 333 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 16 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 63 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 64 PCGQCHS------CHLMQAHSHPDY----HELSPINGK---DIGVDQVRDINEMVAQHAQ 110 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 111 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 167 Query: 188 SLSENNLYKALEQLK 202 +LS N A E LK Sbjct: 168 NLSVPNEEIAFEWLK 182 >gi|317180480|dbj|BAJ58266.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F32] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 SVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|163789939|ref|ZP_02184375.1| DNA polymerase III subunit delta' [Carnobacterium sp. AT7] gi|159874879|gb|EDP68947.1| DNA polymerase III subunit delta' [Carnobacterium sp. AT7] Length = 328 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ HA LFEG G GK + A +L + P C +++ H D Sbjct: 26 QLAHAYLFEGISGTGKKEMSLWLAASLLCQDGEANLPCEKCQN------CRRVFEHQHPD 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + P I V+++R ++ S + + ++ +I+ V+ M AAN+LL Sbjct: 80 VI----EIIPDG----LSIKVEQVRNLKAEFSKSGVESHQKIFIIEDVEKMTTGAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 K LEEP + L++ A IL TI SRC + F +L++ L LE Sbjct: 132 KFLEEPEGSAVAFLLTTAKQRILPTILSRCQLVHFQALTKKKLMAELE 179 >gi|308233501|ref|ZP_07664238.1| DNA polymerase III, subunits gamma and tau [Atopobium vaginae DSM 15829] gi|328943419|ref|ZP_08240884.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM 15829] gi|327491388|gb|EGF23162.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM 15829] Length = 742 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 24/201 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G + L ++ HA LF G +G GK T+ +A +L + Sbjct: 8 YRPAVFQDVVGQTHVVSTLQNAVLEHKIGHAYLFCGPRGTGKTTMARLFAKALLCTSPQN 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-----RIRY 120 P +C + C K +A D L + +TG VD +R R+ Y Sbjct: 68 GLPCGVC--ETC----KNIAQGIHPDVFELDAAS--RTG-------VDNVREEIIDRVNY 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V + +A NALLK+LEEPP V+FIL + IL+TI SR Sbjct: 113 ----APLKGAYKIYIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 + F+ + + ++ L+++ Sbjct: 169 VMRFDFHRIKSDEMFVHLQKV 189 >gi|261856503|ref|YP_003263786.1| DNA-directed DNA polymerase [Halothiobacillus neapolitanus c2] gi|261836972|gb|ACX96739.1| DNA-directed DNA polymerase [Halothiobacillus neapolitanus c2] Length = 361 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 11/150 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ H LL G G+G TL A ++L +P + R C C+ ++A H Sbjct: 57 RLPHGLLVTGASGLGSLTLAREMAAYLLCADPVTTPGAERACGQ--CAACRLRLA--GTH 112 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + L N I+V++IR + SLT G RV +I+ + MNR+AAN L Sbjct: 113 PDIQLLVRDNASKD-----ISVEDIRTLIERFSLT-RYGPLRVALIEQAERMNRSAANGL 166 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSR 180 LK LEEPP LF++ S + + STIRSR Sbjct: 167 LKLLEEPPAGSLFLMTSERADLLPSTIRSR 196 >gi|16272403|ref|NP_438616.1| DNA polymerase III subunit delta' [Haemophilus influenzae Rd KW20] gi|2506369|sp|P43748|HOLB_HAEIN RecName: Full=DNA polymerase III subunit delta' gi|1573429|gb|AAC22113.1| DNA polymerase III, delta' subunit (holB) [Haemophilus influenzae Rd KW20] Length = 327 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPINGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A E LK Sbjct: 162 NLSVPNEEIAFEWLK 176 >gi|317182029|dbj|BAJ59813.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F57] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|254779303|ref|YP_003057408.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori B38] gi|254001214|emb|CAX29182.1| DNA polymerase III gamma and tau subunits (DnaX) [Helicobacter pylori B38] Length = 570 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|145628826|ref|ZP_01784626.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21] gi|144979296|gb|EDJ88982.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21] Length = 327 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ S + Q SH D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCH----SCHLMQARSHP--DY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSTSLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N AL+ LK Sbjct: 162 NLSVPNEQMALDWLK 176 >gi|315586612|gb|ADU40993.1| DNA polymerase III, gamma/tau subunit DnaX [Helicobacter pylori 35A] Length = 559 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|297379917|gb|ADI34804.1| DNA polymerase III, subunits gamma and tau [Helicobacter pylori v225d] Length = 582 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|294340548|emb|CAZ88933.1| putative DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] (DnaX) [Thiomonas sp. 3As] Length = 609 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 18/202 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G + + + L+ R+HHA LF G +G+GK T+ R L Sbjct: 8 RKWRPKSFASLVGQDHVVRALTHALDHDRLHHAYLFTGTRGVGKTTVS-RILAKALNCTG 66 Query: 62 PDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD PC P ++ + D++ L + N V+++ + Sbjct: 67 PDGQGG----VTSQPCGVCPACTEIDAGRFVDYIELDAASN---------RGVEDMTTLL 113 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G ++V MID V ++ +A NA+LK+LEEPP V F+L + + T+ S Sbjct: 114 EQAVYKPTAGRFKVYMIDEVHMLSNHAFNAMLKTLEEPPDYVKFVLATTDPQKVPVTVLS 173 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RCL + + L+Q+ Sbjct: 174 RCLQFNLKQMMPGAIVGHLQQV 195 >gi|291571444|dbj|BAI93716.1| DNA polymerase III delta prime subunit [Arthrospira platensis NIES-39] Length = 335 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 19/227 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + LS+ R+ A LF G G+G+ +L R+ +L P K V Sbjct: 7 LIGQAQAVELLSRVIAQNRIAPAYLFVGIPGVGR-SLAARFFIELLLQPT-RKNLVNSSE 64 Query: 74 PDPCSPFVK---QMASHA---------LHDFLYLSYSLNPKTGKWRTV---ITVDEIRRI 118 D +K +M +H LH LS G R I ++++R I Sbjct: 65 EDAHKQSIKHRVEMRNHPDLLWVEPTYLHQGKLLSAVEAAAAGLKRRAPPQIRLEQVREI 124 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 F+S A V++++ + M AAN LLK+LEEP + VL ILI+ + ++LST+ Sbjct: 125 SQFVSRPALESLRSVVVLEAAETMAEGAANGLLKTLEEPGKSVL-ILIAPSVDSLLSTLV 183 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 SRC I F LS ++ + L Q D + + A GS +AI Sbjct: 184 SRCAKIPFFRLSNTDIIQILNQTGYGEICRHPDIIAM-AQGSPGQAI 229 >gi|291320674|ref|YP_003515939.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae] gi|290753010|emb|CBH40986.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae] Length = 614 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 27/220 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMC 72 G + I + L + ++ HA LF G +G+GK ++ +A + N D+SK ++C Sbjct: 20 GQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFANLINCYHNNDDYSKL-CQIC 78 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + + D + + + N VD IR +R + + G ++ Sbjct: 79 EENGSNTI----------DIIEMDAASNN---------GVDSIRELRDKIQHLPSAGNYK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID V +++ A NALLK+LEEPP V+FI + I TI SR F +S + Sbjct: 120 IYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRMSND 179 Query: 193 NLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L K LEQ I ++ A GS+ A+ I+ Sbjct: 180 TLVKQIKSILEQEDIKYDAEALPYIARLAVGSMRDALSII 219 >gi|256374449|ref|YP_003098109.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] gi|255918752|gb|ACU34263.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] Length = 399 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G M HA LF G G G+ +AG + + +C H Sbjct: 38 GAMTHAWLFTGPPGSGRTEAARAFAGALQCTAADDRPGCGVC--------------AGCH 83 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L +++ I+V+E+R + + +G W+V+++ D + A+NAL Sbjct: 84 TALAGTHADVRVVAPEGLSISVNEMRALVQVSARRPTSGRWQVVIVADADRLTEGASNAL 143 Query: 151 LKSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKI 203 LK++EEPP + +F+L + + P +S TIRSRC ++ S ++ ALE+ + Sbjct: 144 LKAVEEPPDRTVFLLCAPSEHPYDVSVTIRSRCRVVRLGSPKVPDVAAALEEEGV 198 >gi|221215092|ref|ZP_03588059.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD1] gi|221165028|gb|EED97507.1| DNA polymerase III subunit delta [Burkholderia multivorans CGD1] Length = 342 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + ++P + P C C+ F + +H + + Sbjct: 22 HALLLHGQAGIGKLQFAQHLARGFLCESPQPNGEPCGTCAA--CTWFAQ--GNHPDYRIV 77 Query: 94 YLSYSLNPKTG---------------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 G K RT I ++++R + F + ++ G RV++ Sbjct: 78 LPEALAGEAPGAADDTKPADADDGGKKTRTPSKEIKIEQVRALLDFCGVGSHRGGLRVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 138 LYPAEALNVAASNALLKTLEEPPPGVVFLLVSARIDRLLPTIVSRC 183 >gi|301156533|emb|CBW16004.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus parainfluenzae T3T1] Length = 714 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFSEVVGQSHVLTALENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V DPC K + + D + + + K V++ R + Sbjct: 63 ------NCVNGITADPCGECENCKAIEAGNFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSE 191 SRC+ +L E Sbjct: 168 SRCMQFHLKALDE 180 >gi|283458751|ref|YP_003363390.1| DNA replication ATPase [Rothia mucilaginosa DY-18] gi|283134805|dbj|BAI65570.1| ATPase involved in DNA replication [Rothia mucilaginosa DY-18] Length = 380 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%) Query: 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQM-AS 86 + R HA LF G G +A +L + PD R C C V M S Sbjct: 22 AADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDPQN---RGCGQ--CKGCVTVMNGS 76 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA DF + S T I++DE R + G WRVI+++ + M Sbjct: 77 HA--DFTHFSTEA--------THISIDEARELVMKAQDRPTVGRWRVILVEDTERMPERT 126 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +N LLK++EEPP +++L + + +L TIRSRC ++ ++ +++ L Sbjct: 127 SNVLLKAIEEPPPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPTDAQVHEYL 178 >gi|302871138|ref|YP_003839774.1| DNA-directed DNA polymerase [Caldicellulosiruptor obsidiansis OB47] gi|302573997|gb|ADL41788.1| DNA-directed DNA polymerase [Caldicellulosiruptor obsidiansis OB47] Length = 320 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA +FEGE+G+GK L ++ +L + + C + +H DF Sbjct: 25 HAYIFEGEKGLGKKLLAMTFSKQILCEKKLACGVCKSCR-------LFDALTHP--DFKI 75 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 + + K I+VD IR I +S ++ +I + M+ +A NALLK+L Sbjct: 76 IKREEDKKE------ISVDAIREIIKDISRGPIFASKKIYLIQEAEEMSTSAQNALLKTL 129 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 EEPP+ LFIL + +L T+ SR L + F S + + + L+ ++ D Sbjct: 130 EEPPEYALFILTCNNLERLLPTVISRSLVLSFKRYSASEISEILKNYELEPKD 182 >gi|239907167|ref|YP_002953908.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus RS-1] gi|239797033|dbj|BAH76022.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus RS-1] Length = 654 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 15/181 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + +++ LS+ R+ A LF G +G+GK TL A + + P +C+ Sbjct: 18 VAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAKALNCETAPTGEPCNVCS 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +Q+ + D + + + + K VD+ RR++ + ++V Sbjct: 78 ------QCRQITAGVSPDVIEIDAATHGK---------VDDARRLKEDVGYAPLNSRYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + A NALLK+LEEPP +V FIL + +TI SRC F L+++ Sbjct: 123 FIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQSE 182 Query: 194 L 194 L Sbjct: 183 L 183 >gi|188527438|ref|YP_001910125.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Shi470] gi|188143678|gb|ACD48095.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Shi470] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEKGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|114320666|ref|YP_742349.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227060|gb|ABI56859.1| DNA polymerase III, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 648 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 19/232 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFSEMAGQEHVLRALVNALEQQRLHHAYLFTGTRGVGKTTVARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ + D + + + K V++ R + Sbjct: 65 EQGVTAEPCGTC--DAC----RELDAGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 CL +L + L+ +EQ + + AA GS+ A+ +L Sbjct: 170 CLQFNLKNLPGGLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLL 221 >gi|221633732|ref|YP_002522958.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM 5159] gi|221156252|gb|ACM05379.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM 5159] Length = 562 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 26/234 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + L G E I + L R+ HA LF G +G GK + A V ++ Sbjct: 8 RKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAKAVNCRDA 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P C + +A+ D + + + N VD+IR +R + Sbjct: 68 DPWRRPCNQCG------ACRSIATGTAVDIIEIDAASN---------RGVDDIRDLREKV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +ID + R+A NA LK+LEEPP V+F+L + + T+ SRC Sbjct: 113 KYAPVELRTKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQ 172 Query: 183 SIKFNSLSENNLYKALEQLKIM----GWDSKRDFVKI---AAYGSVARAIKILH 229 F L + + +E+L+ + G ++ D + + A GS+ A+ +L Sbjct: 173 RFDFRRLPVDRM---VERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLE 223 >gi|51474033|ref|YP_067791.1| DNA polymerase III subunits gamma and tau [Rickettsia typhi str. Wilmington] gi|51460345|gb|AAU04308.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 400 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 124/303 (40%), Gaps = 56/303 (18%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 14 RKYRPNNFTELQGQEVLVKILSYTILNDRLVGGYLLTGIRGVGKTTSARIIAKAVNCSAL 73 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ V +H D + + + KT ++D+IRRI Sbjct: 74 ITENMTIKTC--EKCTNCV-SFNNHNHPDIIEIDAA--SKT-------SIDDIRRIIESA 121 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP V+FI + + STI SRC Sbjct: 122 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTIISRCQ 181 Query: 183 SIKFNSLS-------------ENNLYKALEQLKIMGWDSK---RDFVKIAAYGSVARAIK 226 LS + NL +E L+I+ S+ RD V I + A Sbjct: 182 RYDLRRLSFEEIFKLLKYITKQENLIADIEALRIIAHKSEGSARDAVSILDQAASMSA-- 239 Query: 227 ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D IISS I + +M + D F++EFI K I K Sbjct: 240 ----KSDNIISSQI-----------INQMLGLVDA----------SFILEFIEKIISKET 274 Query: 287 KAA 289 + A Sbjct: 275 EKA 277 >gi|328947062|ref|YP_004364399.1| DNA polymerase III subunits gamma/tau [Treponema succinifaciens DSM 2489] gi|328447386|gb|AEB13102.1| DNA polymerase III, subunits gamma and tau [Treponema succinifaciens DSM 2489] Length = 572 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 23/214 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + + L S ++ HA LF G +G GK + R L + K P Sbjct: 18 LIGQEFVAETLKNSIQSKKIAHAYLFSGPRGCGKTSTA-RILAKAL---NCQKGPTAF-- 71 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC K++ + + D + + + N +V+++R+I+ + N+ + Sbjct: 72 --PCGECAACKEITAGSSLDVIEIDGASN---------TSVNDVRQIKDEVLFPPNSCRY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ +ID V ++ +A NALLK++EEPP +FI + + +TI+SRC F + Sbjct: 121 KIYIIDEVHMLSTSAFNALLKTIEEPPPYCIFIFATTEIQKVPATIKSRCQQFNFRLVPI 180 Query: 191 ---ENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 + L +A +L I D ++ + GS+ Sbjct: 181 EKVKQQLAEAANELGIKAEDEALYWIARESTGSM 214 >gi|261838049|gb|ACX97815.1| gamma and tau subunits of the DNA polymerase III holoenzyme [Helicobacter pylori 51] Length = 571 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|307248887|ref|ZP_07530898.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854582|gb|EFM86774.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 310 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|172041527|ref|YP_001801240.1| DNA polymerase III subunit delta' [Corynebacterium urealyticum DSM 7109] gi|171852831|emb|CAQ05807.1| DNA polymerase III, delta' subunit [Corynebacterium urealyticum DSM 7109] Length = 448 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 26/208 (12%) Query: 5 AFDPVYNQ---RLFGHEDIEKFLSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVLQ 60 FDPV R + + + L+ + + M H+ LF G G G++ +A ++ Sbjct: 24 GFDPVAGGGVWRKITAQPVRELLAGAVANPQAMTHSWLFTGPPGSGRSIAAKAFATGLV- 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P+ C Q A+ H D ++++ TG +VI V+++R + Sbjct: 83 CPNGGCGECEQC----------QSAATGTHPDIVWIAT-----TG---SVIPVEDVREVI 124 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS-PTILS-TI 177 + WRV++++ D +N +NALLKS+EEPP +F+L + ++ P +S T+ Sbjct: 125 SSAASMPTVSRWRVVVVEDADRLNEAGSNALLKSVEEPPAHTVFVLCAPSTDPLDISITL 184 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMG 205 RSRC + + S + L Q +G Sbjct: 185 RSRCRHVYIPTPSPQQVEDVLLQDASLG 212 >gi|300723624|ref|YP_003712929.1| DNA polymerase III subunit delta' [Xenorhabdus nematophila ATCC 19061] gi|297630146|emb|CBJ90783.1| DNA polymerase III, delta prime subunit [Xenorhabdus nematophila ATCC 19061] Length = 329 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR HHA+L +G G L + + ++ K ++ C H H Sbjct: 21 GRGHHAILLHAHEGTGAGALLYGLSRWLMCQ---DKQGMKSCG-----------KCHGCH 66 Query: 91 DFLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 L ++S L P+ GK I VD +R++ L + G +++ + + + A Sbjct: 67 LMLAETHSDWHVLAPEKGK--NSIGVDTVRQLSEKLYEYSQQGGAKIVWLPSAELLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +NALLK+LEEPPQ F+L +L+T+RSRC Sbjct: 125 SNALLKTLEEPPQNTYFLLQCQHPANLLATLRSRC 159 >gi|187735722|ref|YP_001877834.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila ATCC BAA-835] gi|187425774|gb|ACD05053.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila ATCC BAA-835] Length = 732 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 15/178 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + + + L R+ HA LF G +G GK + +A + + Sbjct: 8 RKYRPLTFDDVLGQDHVVRTLKNAIEHNRLAHAYLFVGPRGTGKTSTARIFAKAL----N 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S P + DP +++A D L + + N +D IR +R + Sbjct: 64 CSGGP--KVDFDPHEDICEEIAEGRSLDVLEIDGASN---------RGIDHIRDLRDNVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +R++ ID V + + + NALLK+LEEPP V FI + IL TI SRC Sbjct: 113 FAPSRGNFRIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRC 170 >gi|67459756|ref|YP_247380.1| DNA polymerase III subunits gamma and tau [Rickettsia felis URRWXCal2] gi|67005289|gb|AAY62215.1| DNA polymerase III gamma and tau chains [Rickettsia felis URRWXCal2] Length = 521 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 17/230 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +G+GK T A V + Sbjct: 27 RKYRPSNFTELQGQEVLVKVLSYTILNDRLTGGYLLTGIRGVGKTTSARIIAKAVNCSAL 86 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ + +H D + + + KT +VD+IRRI Sbjct: 87 ITENTTIKTC--EQCTNCI-SFNNHNHPDIIEIDAA--SKT-------SVDDIRRIIESA 134 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP ++FI + I +TI SRC Sbjct: 135 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 194 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKIL 228 LS ++K LE + K + + ++I A+ GS A+ IL Sbjct: 195 RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAHKSEGSARDAVSIL 244 >gi|157825357|ref|YP_001493077.1| DNA polymerase III subunit delta' [Rickettsia akari str. Hartford] gi|157799315|gb|ABV74569.1| DNA polymerase III subunit delta' [Rickettsia akari str. Hartford] Length = 292 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 11/121 (9%) Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 SY+ N K I++++IR+++ FLS T+ ++V++I D MN NAAN+ LK LE Sbjct: 90 SYTSNAKN------ISIEQIRKLQDFLSKTSAISGYKVVVIYAADLMNLNAANSCLKILE 143 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSL---SENNLYKALEQLKIMGWDSKRDF 212 + P+ LI+ + +I+STIRSRC + S + N+LY L+ ++ + + DF Sbjct: 144 DAPKNSYIFLITSRAASIISTIRSRCFKVNIRSTLPHARNDLY--LQFIQPIADNETLDF 201 Query: 213 V 213 + Sbjct: 202 I 202 >gi|307544645|ref|YP_003897124.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM 2581] gi|307216669|emb|CBV41939.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM 2581] Length = 684 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 21/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E +++ L GR+HHA LF G +G+GK TL R L Sbjct: 5 VLARKWRPRTFHELVGQEHVQRALVNALDQGRLHHAYLFTGTRGVGKTTLA-RILAKCLN 63 Query: 61 ----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 P + C CS + + D L + + K V++ R Sbjct: 64 CTAGGPGDEAVTSQPCGQ--CS-NCQAIDQGRFVDLLEVDAASRTK---------VEDTR 111 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T Sbjct: 112 ELLDNVQYAPTQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPPT 171 Query: 177 IRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + SRCL + +L LE + +S + AA GS+ A+ + Sbjct: 172 VLSRCLQFTLKHMPPERIVGHLSMVLEAESVPFEESALWLLGKAAEGSMRDAMSL 226 >gi|22125659|ref|NP_669082.1| DNA polymerase III subunit delta' [Yersinia pestis KIM 10] gi|45442038|ref|NP_993577.1| DNA polymerase III subunit delta' [Yersinia pestis biovar Microtus str. 91001] gi|21958571|gb|AAM85333.1|AE013779_7 DNA polymerase III, delta prime subunit [Yersinia pestis KIM 10] gi|45436901|gb|AAS62454.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Microtus str. 91001] Length = 349 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M D++ V N + + + + Q+ +GR HHALL G G+ L + + ++ Sbjct: 1 MADQSGTRVMNWYPWLNAPYRQLVGQHS-TGRGHHALLLHSLPGNGEDALIYALSRWLMC 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + C+ + M + D+ Y L P+ GK + I V+ +R++ Sbjct: 60 QQRQGEKSCGECH------SCRLMLAGNHPDW----YVLTPEKGK--SSIGVELVRQLID 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L A G +V+ + + + AANALLK+LEEPP+K F+L H ++L+T+RSR Sbjct: 108 KLYSHAQQGGAKVVWLPHAEVLTDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSR 167 Query: 181 C 181 C Sbjct: 168 C 168 >gi|261839461|gb|ACX99226.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 52] Length = 568 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|242238465|ref|YP_002986646.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech703] gi|242130522|gb|ACS84824.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii Ech703] Length = 664 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSMERIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C D C +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +L + + L+ + Sbjct: 170 CLQFHLKALDPEAIRQHLQHV 190 >gi|148980538|ref|ZP_01816111.1| DNA polymerase III subunit delta' [Vibrionales bacterium SWAT-3] gi|145961191|gb|EDK26506.1| DNA polymerase III subunit delta' [Vibrionales bacterium SWAT-3] Length = 321 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 8/107 (7%) Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 M S + DF +S K GK ITVD++R + ++ G RVI+++P + MN Sbjct: 68 MKSGSHPDFHVISPE---KEGK---SITVDQVRASNRWAQESSQLGGLRVILLEPAEAMN 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +A+NALLK+LEEP + +FIL + S ++ TI SRC +FN +S Sbjct: 122 ESASNALLKTLEEPSSQCIFILSTRNSNRLMPTIISRCQ--QFNVVS 166 >gi|319950448|ref|ZP_08024362.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4] gi|319435871|gb|EFV91077.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4] Length = 414 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS SGR++HA LF G +G GK + + + + Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSVALSSGRINHAYLFSGPRGCGKTSSARILARSLNCVHG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + D L + + VD+ R +R Sbjct: 65 P--TATPCGEC--DSCVALAP--GGNGTLDVTELDAASHGG---------VDDTRDLRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +RV++ID + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFFAPASSRYRVLIIDEAHMVTNAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L+ +++ LE++ Sbjct: 170 HHYPFRLLTPSSMRGLLERI 189 >gi|317486264|ref|ZP_07945097.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316922510|gb|EFV43763.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 577 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 23/219 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCN 73 G E ++ LS+ ++ A L G +G+GK T+ F A + + P + P C Sbjct: 20 GQETVKAILSRAAAEDKVAPAYLLSGTRGVGKTTIARIFAKALNCVHAP--TGEPCNQC- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C M +H D + + + N +D+ RR+R ++ G ++V Sbjct: 77 -EQCRRIT--MGNHV--DVVEIDGASN---------RGIDDARRLREAIAYAPMEGRYKV 122 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID + R + NALLK+LEEPP + FIL + + TI SRC F ++ E Sbjct: 123 FIIDEAHMLTRESFNALLKTLEEPPPRATFILATTEAHKFPITIVSRCQHFIFKAIPEAE 182 Query: 194 LYKALEQ-LKIMGWDSKRDFVKI---AAYGSVARAIKIL 228 L L + L G + + V++ A GSV ++ +L Sbjct: 183 LVAHLTRVLNKEGIPFEENAVRLLARRAAGSVRDSMSLL 221 >gi|90020982|ref|YP_526809.1| DNA polymerase III subunits gamma and tau [Saccharophagus degradans 2-40] gi|89950582|gb|ABD80597.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Saccharophagus degradans 2-40] Length = 690 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSEPCGECS------ACVEISEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++S + L + Sbjct: 170 CLQFNLKNMSPERIVGHLSHI 190 >gi|307264520|ref|ZP_07546104.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870119|gb|EFN01879.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 310 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|224534688|ref|ZP_03675260.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] gi|224513936|gb|EEF84258.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] Length = 561 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 35/260 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 ++ +A +F G +G+GK + +A + + P CN K + S + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCLNCKNGPAVMPCGECNN------CKSIDSDSSL 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + N +V +IR+I+ + +R+ +ID V ++ +A NAL Sbjct: 90 DVIEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFNAL 140 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGW 206 LK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 141 LKTIEEPPSYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCFEDHIKYE 200 Query: 207 DSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADELL 263 D ++ + GSV A + D+++S S I L I KM DE L Sbjct: 201 DEALKWIAYKSGGSVRDAYTLF----DQVVSFTNSDIKLDQIR------SKMGFTNDEFL 250 Query: 264 SQDQKIAFDFLIEFILKEIC 283 +K+A L E + + IC Sbjct: 251 ---EKLAVSILSEDVKELIC 267 >gi|255657497|ref|ZP_05402906.1| putative DNA polymerase III, delta' subunit [Clostridium difficile QCD-23m63] gi|296449093|ref|ZP_06890883.1| DNA-directed DNA polymerase III subunit delta' [Clostridium difficile NAP08] gi|296879916|ref|ZP_06903889.1| DNA-directed DNA polymerase III subunit delta' [Clostridium difficile NAP07] gi|296262186|gb|EFH08991.1| DNA-directed DNA polymerase III subunit delta' [Clostridium difficile NAP08] gi|296429205|gb|EFH15079.1| DNA-directed DNA polymerase III subunit delta' [Clostridium difficile NAP07] Length = 311 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G + +K+L+ ++++A +FEG GIGK + +L + +P Sbjct: 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSP 60 Query: 69 -VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + PD S I + +IR ++ + + + Sbjct: 61 DYVLIKPDGNS-------------------------------IKIAQIRNLQSDIVIRPH 89 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 Y ++ +I+ + M A NALLK+LEEPP + IL+++ ++L TI+SRC IKF Sbjct: 90 RDY-KIYIINNAEKMTLEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKF 147 >gi|91762357|ref|ZP_01264322.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91718159|gb|EAS84809.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 557 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + +S + ++ +A LF G +GIGK T A V ++ + S +C Sbjct: 20 LIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTT----TARIVAKSLNCSNGIDNLCK 75 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C S++ H D L + + KTG VD++R + F T ++ Sbjct: 76 EELCENC--NAISNSNHIDVLEMDAA--SKTG-------VDDVRDLIEFSRYGPTTAKYK 124 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID V +++ A NALLK+LEEPP+ + FI + I T+ SRC + + Sbjct: 125 IFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSL 184 Query: 193 NLYKALEQLKIMGWDSKRD-----FVKIAAYGSVARAIKIL 228 L+ ++++K + D VKI+ GSV A+ +L Sbjct: 185 ELFDFIKKIKEKENGNASDDALKLIVKISE-GSVRDALSLL 224 >gi|240950249|ref|ZP_04754529.1| DNA polymerase III subunit delta' [Actinobacillus minor NM305] gi|240295250|gb|EER46049.1| DNA polymerase III subunit delta' [Actinobacillus minor NM305] Length = 328 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 ++ + GR HHALLF+ + G+G TL A +L + P C S + Q Sbjct: 15 ITSTFLQGRGHHALLFKTDVGLGTETLIQHLAQWLLCQQKNVEEPCFQCK----SCLLLQ 70 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H L+L S+ K I VD+IR + L A V+ I + + Sbjct: 71 SGNHP---DLHLLASIENKD------IGVDQIREMTLKLQTFAQQSGNVVVYIRGAERLT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEP + V F+L + +++TI+SRC Sbjct: 122 EAAANALLKTLEEPREGVYFLLETALQAKMMATIQSRC 159 >gi|115351880|ref|YP_773719.1| DNA polymerase III subunit delta' [Burkholderia ambifaria AMMD] gi|115281868|gb|ABI87385.1| DNA polymerase III, delta prime subunit [Burkholderia ambifaria AMMD] Length = 342 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMC----------NPDPCSPFVKQ 83 HALL G+ GIGK A G + + P + P C +PD + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCEAPQPNGEPCGSCAACTWFAQGNHPDYRIVLPEV 81 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +A A + + GK I ++++R + F + ++ G RV+++ P Sbjct: 82 LAGEAPGAVDDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 142 EALNVAASNALLKTLEEPPSGVVFLLVSARIDRLLPTIISRC 183 >gi|145638633|ref|ZP_01794242.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII] gi|145272228|gb|EDK12136.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII] gi|309750129|gb|ADO80113.1| DNA polymerase III, delta subunit [Haemophilus influenzae R2866] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ S + Q SH D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCH----SCHLMQARSHP--DY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSTSLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N AL+ LK Sbjct: 162 NLSVPNEQMALDWLK 176 >gi|257437712|ref|ZP_05613467.1| putative DNA polymerase III, delta' subunit [Faecalibacterium prausnitzii A2-165] gi|257200019|gb|EEU98303.1| putative DNA polymerase III, delta' subunit [Faecalibacterium prausnitzii A2-165] Length = 321 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 17/204 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G+ +++ + RM H++L GE+G+G A L P+ + Sbjct: 5 RLEGNSELKTSVRLMLGGRRMTHSVLLVGEEGLGTGFAARCVAADYLY-PNGGAPAEALL 63 Query: 73 NPDPCSPFVK-------QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + C K Q+ + + + + ++ +G V V +R + SL+ Sbjct: 64 RGECCRAVAKAGKRDSGQIETGIVREAISVT---GMGSGGRYLVGQVTAMRSEIFNTSLS 120 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A R +++ V+ MN +ANALLK +EEPP+ VLF+L + + +L TIRSRC+S Sbjct: 121 AE---GRAVLLYHVERMNEESANALLKVMEEPPEGVLFLLTADSLAGVLPTIRSRCISFA 177 Query: 186 FNSLSENNLYKALEQLKIMGWDSK 209 +S + + G DSK Sbjct: 178 VAPVSPADCAR---YCTAQGVDSK 198 >gi|145630366|ref|ZP_01786147.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021] gi|144984101|gb|EDJ91538.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 28/197 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ Sbjct: 8 LTPIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGD 56 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K P C+ M +H+ D+ + L+P GK I VD++R I ++ Sbjct: 57 K-PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQH 102 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 103 AQQNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSASLLATIYSRC---Q 159 Query: 186 FNSLSENNLYKALEQLK 202 +LS N A E LK Sbjct: 160 VWNLSVPNEEIAFEWLK 176 >gi|296775809|gb|ADH43064.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster alpha proteobacterium H17925_48B19] Length = 514 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 21/226 (9%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G E I + + S + +A LF G +G+GK T +A V ++ + Sbjct: 14 PKVFEDLIGQEIIAETIKNSIISDKSPNAFLFTGIRGVGKTT----FARIVAKSLNCEHG 69 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 MC CS S+ + D L + + KTG VD++R + F Sbjct: 70 IENMCKK-KCSNCDAITNSNHI-DVLEMDAA--SKTG-------VDDVRELIEFSRYGPT 118 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 T +++ +ID V +++ A NALLK+LEEPP+ + FI + I T+ SRC + Sbjct: 119 TAKYKIFIIDEVHMLSKQAFNALLKTLEEPPKYLKFIFATTEIKKIPVTVISRCQRFDLS 178 Query: 188 SLSENNLYKALEQLKIMGWDSKRD-----FVKIAAYGSVARAIKIL 228 + L+ ++ +K D VKI+ GSV A+ +L Sbjct: 179 RVKSEELFNYIKMIKDKEGGKVSDEALKLIVKISE-GSVRDALSLL 223 >gi|307257915|ref|ZP_07539669.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863562|gb|EFM95491.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 310 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|328956617|ref|YP_004374003.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4] gi|328672941|gb|AEB28987.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4] Length = 328 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ HA LFEG G GK + A +L P C +++ H D Sbjct: 26 QLAHAYLFEGVSGTGKKEMSLWLAASLLCKESSGNLPCENCQN------CRRVFEHQHPD 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + P+ I V+++R ++ S + ++ +++ V+ M AAN+LL Sbjct: 80 VI----EIVPEG----LSIKVEQVRNLKAEFSKSGVESQQKIFIVEDVEKMTPGAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 K LEEP + L++ A IL TI SRC + F SL++ L LE Sbjct: 132 KFLEEPEGSAVAFLLTTAKNRILPTILSRCQLVHFQSLTKKKLMAELE 179 >gi|307246745|ref|ZP_07528814.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255730|ref|ZP_07537533.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260182|ref|ZP_07541891.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852351|gb|EFM84587.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861290|gb|EFM93281.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865727|gb|EFM97606.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 310 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|307251421|ref|ZP_07533335.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253500|ref|ZP_07535370.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856505|gb|EFM88647.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859001|gb|EFM91044.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 310 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR HHALLF+ + G+G TL R+ H L QNP +A + C S + +H Sbjct: 3 GRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHREQA-CQQCK----SCLLTAAGNHP 56 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF + L P GK I +D++R L + G V+ I + + ++N Sbjct: 57 --DF----HILEPIDGK---DIGIDQVREANAKLQNFSQQGGNAVVYIRGAERLTEASSN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP V F+L + +L TI+SRC Sbjct: 108 ALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 140 >gi|217967178|ref|YP_002352684.1| DNA-directed DNA polymerase [Dictyoglomus turgidum DSM 6724] gi|217336277|gb|ACK42070.1| DNA-directed DNA polymerase [Dictyoglomus turgidum DSM 6724] Length = 326 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G + L + R+ LF G +G+GK A ++Q + P Sbjct: 4 KEIVGQRQAVEILRKAIHENRLSQTYLFVGPEGVGKKLT----AISLVQALNCKIEPFEG 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C +K ++ L + + P+ G+W + V E+R+ Y + G Sbjct: 60 CGKCDICEAIKNLSYPDL-------FYIEPE-GQWYKIQQVRELRKEAY---VKPYIGDL 108 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D + ANALLK LEEPP+ LFILI++ +L TI SR I F L+ Sbjct: 109 KVFILDEAHQLRNEGANALLKILEEPPEHTLFILIAYRPELLLPTIISRSQIINFTYLTY 168 Query: 192 NNLYKALE 199 +++ +E Sbjct: 169 EEVWRIIE 176 >gi|325576841|ref|ZP_08147456.1| DNA-directed DNA polymerase III subunit delta' [Haemophilus parainfluenzae ATCC 33392] gi|325161047|gb|EGC73165.1| DNA-directed DNA polymerase III subunit delta' [Haemophilus parainfluenzae ATCC 33392] Length = 326 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 +SQ + G HHALL + +QG+G L ++ Q PD C+ Sbjct: 15 ISQTFSEGLGHHALLIKADQGLGAERLFDALTKRIMCQTPD--NVACGHCHA------CH 66 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 MA+ + DF + L + GK I VD++R I +S A +++ I + + Sbjct: 67 LMAAQSHPDF----HVLASQEGK---DIGVDQVRAINEVVSQHAQQNGNKLVYIQDAERL 119 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEP F+L + S ++L+TI SRC Sbjct: 120 TEAAANALLKTLEEPHPNTYFLLQTEPSSSLLATIYSRC 158 >gi|172055030|ref|YP_001806357.1| DNA polymerase III subunit gamma [Cyanothece sp. ATCC 51142] gi|171701311|gb|ACB54291.1| DNA polymerase III gamma subunit [Cyanothece sp. ATCC 51142] Length = 381 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 35/221 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + ++K L++ + ALL G +G GK + A + + P C Sbjct: 34 LTGQDSVQKVLTRLITEDSVPQALLLSGPKGTGKTSTARIIAMSLNCEKGVTTTPCGECK 93 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY--- 130 K + + D + L + + VD+IR+ L A+ GY Sbjct: 94 ------NCKAIQNGNSLDVVELDAASHNG---------VDDIRK------LVADAGYAPF 132 Query: 131 ---WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 RV +ID ++ +A NA LK+LEEP F+L + +L T+RSRCL ++F Sbjct: 133 SARTRVFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFR 192 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARAIK 226 +S++ + + LE + +K++ V I + ++AR+ K Sbjct: 193 PISQSEVAQRLEDI------AKKEGVSIDDSCLEAIARSSK 227 >gi|148377949|ref|YP_001256825.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae PG2] gi|148291995|emb|CAL59387.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae PG2] Length = 614 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 27/204 (13%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 ++ HA LF G +G+GK ++ +A + N D+SK ++C + + Sbjct: 36 KISHAYLFCGPRGVGKTSVARIFANLINCYHNNDDYSKL-CQICEENGSNTI-------- 86 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N VD IR +R + + G +++ +ID V +++ A N Sbjct: 87 --DIIEMDAASNN---------GVDSIRELRDKIQHLPSVGNYKIYIIDEVHMLSKGAFN 135 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA----LEQLKIM 204 ALLK+LEEPP V+FI + I TI SR F +S + L K LEQ I Sbjct: 136 ALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRMSNDTLVKQIKSILEQEGIK 195 Query: 205 GWDSKRDFVKIAAYGSVARAIKIL 228 ++ A GS+ A+ I+ Sbjct: 196 YDAEALPYIARLAVGSMRDALSII 219 >gi|3176888|gb|AAC18856.1| putative DNA polymerase III delta' subunit [Yersinia pestis] Length = 189 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 TGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPPQK F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPQKTYFLLDCHQPASLLATLRSRC 159 >gi|70729286|ref|YP_259023.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens Pf-5] gi|68343585|gb|AAY91191.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens Pf-5] Length = 692 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTCS------VCCEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL +++ + + L + Sbjct: 170 CLQFSLKNMTPERVVEHLSHV 190 >gi|289209016|ref|YP_003461082.1| DNA polymerase III subunits gamma/tau [Thioalkalivibrio sp. K90mix] gi|288944647|gb|ADC72346.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. K90mix] Length = 587 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 23/246 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGRFEDLVGQPHVVRALANALSGDRLHHAYLFAGTRGVGKTTIARILARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + + VD+ R + Sbjct: 65 ETGITATPCGECR------SCVEIAEGRHLDLIEVDAASRTR---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID V ++ + NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVSYAPTAGRFKVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFN----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L +L + LE + + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKPMPPALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAYGG 229 Query: 233 DKIISS 238 D++ S Sbjct: 230 DRLTES 235 >gi|220906429|ref|YP_002481740.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7425] gi|219863040|gb|ACL43379.1| DNA polymerase III, delta prime subunit [Cyanothece sp. PCC 7425] Length = 325 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS--KAPVRM 71 L G + L+Q R+ A LF G G+G+ ++ +L++ S + P Sbjct: 11 LIGQPQAVEILTQAIAKQRIAPAYLFAGPDGVGRGLAARQFLELILRSSTSSPQRQPSFQ 70 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPK---TGKWRTVITVDEIRRIRYFLSLTANT 128 +PD + ++ + L L K K R I ++++R I F+S Sbjct: 71 NHPD----LLWIEPTYTVQGKLVTLSELQTKGEQPPKSRPQIRLEQVREISRFVSRAPLE 126 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 ++++ + MN AAN LLK+LEEP Q L ILI+ + ++L T+ SRC + F Sbjct: 127 ALRSLVVLQQAETMNEAAANGLLKTLEEPGQATL-ILIAPSELSLLPTLVSRCQRVPFYR 185 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCDKIISSYIDLIH 244 L L + ++Q + +++ A GS AI K+ D I+ + L Sbjct: 186 LPPAELAQVIQQTPYAELLTHPQILQM-AQGSPGAAINHWQKLQTLPAD-ILQACNPLPS 243 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFL 274 PR AL+ +QI+ L + Q D+L Sbjct: 244 SPR--AALELARQISQTLDLESQLWLVDYL 271 >gi|322515571|ref|ZP_08068552.1| DNA-directed DNA polymerase III subunit delta' [Actinobacillus ureae ATCC 25976] gi|322118374|gb|EFX90640.1| DNA-directed DNA polymerase III subunit delta' [Actinobacillus ureae ATCC 25976] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 L++ + GR HHALLF+ + G+G TL R+ H L QNP +A + C S + Sbjct: 13 LTESFLHGRGHHALLFKTDSGLGTETL-IRHFAHWLLCQNPHGEQA-CQQCK----SCLL 66 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H DF + L P K I +D++R L + G V+ I + Sbjct: 67 TTAGNHP--DF----HILEPIDDK---DIGIDQVRETNAKLQNFSQQGGNAVVYIRGAER 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++NALLK+LEEP V F+L + +L TI+SRC Sbjct: 118 LTEASSNALLKTLEEPHNSVYFLLEAPLQGAMLPTIQSRC 157 >gi|145636278|ref|ZP_01791947.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH] gi|145270443|gb|EDK10377.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRGINEIVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A E LK Sbjct: 162 NLSVPNEEIAFEWLK 176 >gi|219849461|ref|YP_002463894.1| DNA polymerase III subunit delta' [Chloroflexus aggregans DSM 9485] gi|219543720|gb|ACL25458.1| DNA polymerase III, delta prime subunit [Chloroflexus aggregans DSM 9485] Length = 344 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 121/275 (44%), Gaps = 29/275 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE + L + R+ HA LF G GIGK+ L R A +L + Sbjct: 8 IHGHEWAIEQLRSNIRTQRVAHAYLFAGPSGIGKSLLALRMAQALL---------CERQD 58 Query: 74 PDPC-SPFVKQMASHALHDFLYLS------YSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 DPC + H H + ++ + + + + IR + L+L Sbjct: 59 GDPCLQCRTCRRIEHGTHPDVRVAGMDTQAAAAKADEATRQKELKIATIREWQRDLALRP 118 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 RV+++ + ++ AANA+LK+LEEPP +L++H+S +L TI SRC ++ Sbjct: 119 FEAQRRVLILHDAERLSEEAANAMLKTLEEPPDYATLLLVAHSS-ELLPTIVSRCRVLRL 177 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKII---SSYID 241 L + AL+ G +S + ++AA+ G V AI +L D D + + Sbjct: 178 RPLPRAQVAAALQ---ARGAESAQ-AAELAAWSDGRVGWAIGMLS-DPDAQTARRAQLTE 232 Query: 242 LIHIPRQEY--ALQKMQQIADELLSQDQKIAFDFL 274 LI + RQ+ L +Q A E + DQ +L Sbjct: 233 LITLSRQDVGAGLYWAEQRAKEYRAGDQDTVLAWL 267 >gi|162007986|ref|YP_457625.2| DNA polymerase III subunits gamma and tau [Erythrobacter litoralis HTCC2594] Length = 575 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 23/244 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ R+ HA L G +G+GK + R L Sbjct: 36 VLARKYRPQTFSQLIGQEPMVRTLANAIERDRLAHAFLMTGVRGVGKTSTA-RLIAKSLN 94 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P DPC A + TG VD++R I Sbjct: 95 CIGPDGQGGP----TIDPCGQCEPCTAIAEGRHIDVIEMDAASHTG-------VDDVREI 143 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T+ Sbjct: 144 IEAVRYAAVSARFKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVL 203 Query: 179 SRCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-----H 229 SR + + L K EQ ++ D + AA GSV + IL H Sbjct: 204 SRTQRFDLRRIPADLLQKHFGWVCEQEQVEAEDEALAMIAAAAEGSVRDGLSILDQAIAH 263 Query: 230 YDCD 233 D D Sbjct: 264 ADLD 267 >gi|330502977|ref|YP_004379846.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina NK-01] gi|328917263|gb|AEB58094.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina NK-01] Length = 710 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGISSTPCGTCS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYSPSRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|197335565|ref|YP_002156556.1| DNA polymerase III, delta' subunit [Vibrio fischeri MJ11] gi|197317055|gb|ACH66502.1| DNA polymerase III, delta' subunit [Vibrio fischeri MJ11] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 15/151 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA+L G G+ L +Y L P C+ +K LH Sbjct: 24 RLPHAILCAMPIGAGREAL-VQYFADTLLCLTQGIEPCGFCHS---CELIKSQTHPDLH- 78 Query: 92 FLYLSYSLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + P+T GK I+V++IR+ + ++ RVI+IDP + M +AANAL Sbjct: 79 ------WIKPETEGK---SISVEQIRQCNSWALESSQFNAKRVIIIDPAEKMTESAANAL 129 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LE PP+ F+L++ + +L TIRSRC Sbjct: 130 LKTLEAPPKNCQFVLLADSPHQLLPTIRSRC 160 >gi|121604850|ref|YP_982179.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] gi|120593819|gb|ABM37258.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] Length = 373 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 44/74 (59%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD R F T + G +V+++ P + MN AN LLK+LEEPP V FIL + A Sbjct: 117 IKVDAAREAVSFTQFTRSRGTTKVVLVFPAERMNHITANTLLKTLEEPPGAVKFILATEA 176 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 177 AHQLLPTIRSRCLG 190 >gi|226363674|ref|YP_002781456.1| DNA polymerase III subunit delta' [Rhodococcus opacus B4] gi|226242163|dbj|BAH52511.1| DNA polymerase III delta' subunit [Rhodococcus opacus B4] Length = 404 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 38/205 (18%) Query: 13 RLFGHEDIEKFLSQYYC---------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RL G ED+E L+ M H+ LF G G G++ +A LQ Sbjct: 6 RLVGQEDVESELTAAATAARRGVGEMGSSMTHSWLFTGPPGSGRSVAAQCFAA-ALQCTS 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV------ITVDEIRR 117 +C HA + ++ G R V I+V E+R Sbjct: 65 EGTPGCGVC--------------HACTTAMAGTH------GDVRQVVPEGLSISVKEMRA 104 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA-SPTILS- 175 + +TG W++++++ D + AANALLK +EEPP + +F+L + + P +S Sbjct: 105 TVQTAARRPSTGRWQIVVVEDADRLTEGAANALLKVVEEPPDRTVFLLCAPSVDPQDISV 164 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ 200 T+RSRC I + S +++ K L + Sbjct: 165 TLRSRCRHIHLVTPSADSIAKVLRE 189 >gi|256370652|ref|YP_003108477.1| N terminal region of DNA polymerase III subunit gamma [Candidatus Sulcia muelleri SMDSEM] gi|256009444|gb|ACU52804.1| N terminal region of DNA polymerase III, gamma subunit [Candidatus Sulcia muelleri SMDSEM] Length = 347 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 29/191 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G ++I + L + + + LF G +G+GK T A V D Sbjct: 8 RKYIPRDFEEVIGQKNITETLKKAIEKKMLSKSFLFCGPRGVGKTTCAKILARKVNNFSD 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K +++ + + L + N +VD+IR I ++ Sbjct: 68 EEK--------------------NSMFNIIELDAASNN---------SVDDIRNIINQVN 98 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ +A NA LK LE+PP V+FIL + ILSTI SRC Sbjct: 99 FRPQYGKYKVYIIDEVHMLSNSAFNAFLKILEDPPSHVIFILATTEKNKILSTIISRCQV 158 Query: 184 IKFNSLSENNL 194 FN +S N + Sbjct: 159 YDFNRISVNEI 169 >gi|28209849|ref|NP_780793.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88] gi|28202284|gb|AAO34730.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88] Length = 552 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + R+ HA LF G +G GK + A V Sbjct: 11 REWRPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAV----- 65 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ K++ S+ L D L + N +VD IR I Sbjct: 66 ---NCLDLRDGEPCNECEICKKINSNMLIDIEELDAASNN---------SVDNIRSIIEE 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 VYYPPREAKYKVYIMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 173 Query: 182 LSIKFNSLSENNLYKAL 198 F + ++++ L Sbjct: 174 QRFDFKRIKSEDIFQRL 190 >gi|309972388|gb|ADO95589.1| DNA polymerase III, delta subunit [Haemophilus influenzae R2846] Length = 327 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 28/197 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ Sbjct: 8 LTPIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGD 56 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K P C+ M +H+ D+ + L+P GK I VD++R I ++ Sbjct: 57 K-PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQH 102 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 103 AQQNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---Q 159 Query: 186 FNSLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 160 VWNLSVPNEQTAVDWLK 176 >gi|268589222|ref|ZP_06123443.1| DNA polymerase III, delta' subunit [Providencia rettgeri DSM 1131] gi|291315478|gb|EFE55931.1| DNA polymerase III, delta' subunit [Providencia rettgeri DSM 1131] Length = 330 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 12/156 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y +GR HHALL G G L + + ++ C+ S + +H Sbjct: 18 YQNGRGHHALLLHSIPGNGAQALCYGISRWLICQERDGLKSCGQCH----SCRLMLAGNH 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + + + K ++ ++VD +R++ LS A G +V+ I V+ + AA Sbjct: 74 PDYHII--------EVEKGKSTVSVDAVRKLIETLSRHAQQGGNKVVYIPQVEALTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 NALLK+LEEP + F+L S +L+TIRSRCLS Sbjct: 126 NALLKTLEEPAKDTYFLLGSDKQENLLATIRSRCLS 161 >gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] gi|167658703|gb|EDS02833.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] Length = 639 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + I L G++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPATFSSVVGQKHITSTLKNAIERGQLAHAYLFCGPRGVGKTTCARIFAKAINCLHP 68 Query: 63 DFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + ++A CN + C F S +H+ S + +V++IR + Sbjct: 69 EGAEA----CNACESCRSF-NDGRSLNIHELDAASNN------------SVEDIRSLIEQ 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G + V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 112 VRIIPQVGRYSVFIIDEVHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + + + L+ Q I D + + A G + A+ + DK +S Sbjct: 172 QIYDFNRIRVEDSVEYLKYIASQEGITADDESLNLIAQKADGGMRDALSMF----DKAVS 227 >gi|260597470|ref|YP_003210041.1| DNA polymerase III subunit delta' [Cronobacter turicensis z3032] gi|260216647|emb|CBA29966.1| DNA polymerase III subunit delta' [Cronobacter turicensis z3032] Length = 342 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 18/159 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKA--PVRMCNPDPCSPFVKQM 84 + +GR HHA+L G+G L + + + Q P K+ R C + Q Sbjct: 25 WQAGRGHHAVLIHALPGMGDDALIYALSRWRMCQQPQGQKSCGECRACQ-------LMQA 77 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +H D+ Y P+ GK + + +D IR I L A G +V+ I + Sbjct: 78 GTHP--DY----YQAEPEKGK--STLGIDAIRDISEKLYDRARLGGAKVVWIKEAAQLTE 129 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 AANALLK+LEEPP+ F+L + +T+RSRC S Sbjct: 130 AAANALLKTLEEPPENTWFLLGCREPEQLPATLRSRCFS 168 >gi|317052107|ref|YP_004113223.1| DNA polymerase III subunits gamma and tau [Desulfurispirillum indicum S5] gi|316947191|gb|ADU66667.1| DNA polymerase III, subunits gamma and tau [Desulfurispirillum indicum S5] Length = 548 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 20/220 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I + L GR+ HAL+F G +G+GK ++ +L Sbjct: 8 RKYRPRTFAEVVGQQHISRTLLNSIRGGRLAHALIFNGPRGVGKTSMA-----RILAKSL 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 APV +PC +A A D + + + N +T+I + Y Sbjct: 63 NCMAPV---EGEPCGTCENCVAIDQGAFLDVVEIDAASNRGIDSMKTLI-----EEVDYA 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID + R A NA LK+LEEPP +F+L + + TI SRC Sbjct: 115 PAM----GQVKVYIIDEFHMLTREAFNAFLKTLEEPPPHTVFVLATTDLHKVNPTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGS 220 F + + + +AL L G + D ++I A S Sbjct: 171 QRHDFRRIPRDEMVQALAHILGNEGIAFETDALQIIATTS 210 >gi|319775620|ref|YP_004138108.1| DNA polymerase III subunit delta' [Haemophilus influenzae F3047] gi|317450211|emb|CBY86427.1| DNA polymerase III, delta prime subunit [Haemophilus influenzae F3047] Length = 327 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 162 NLSVPNEQMAVDWLK 176 >gi|298208941|ref|YP_003717120.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus HTCC2559] gi|83848868|gb|EAP86737.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus HTCC2559] Length = 600 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 28/188 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-P 62 R + P + G + I L + + ALLF G +G+GK T A + Q+ Sbjct: 9 RKYRPTTFADVVGQQAITNTLVNAIENNHLAQALLFTGPRGVGKTTCARILAKKINQDGT 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D ++ DF + + L+ + +VD+IR + + Sbjct: 69 DVAED----------------------EDFAFNIFELDAASNN-----SVDDIRNLIDQV 101 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G+++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 RIPPQVGHYKVYIIDEVHMLSQAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQ 161 Query: 183 SIKFNSLS 190 F ++ Sbjct: 162 IFDFKRIT 169 >gi|108801757|ref|YP_641954.1| DNA polymerase III subunit delta' [Mycobacterium sp. MCS] gi|119870908|ref|YP_940860.1| DNA polymerase III subunit delta' [Mycobacterium sp. KMS] gi|108772176|gb|ABG10898.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. MCS] gi|119696997|gb|ABL94070.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. KMS] Length = 402 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 18/201 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A LQ + V C C MA Sbjct: 36 TGTMTHAWLITGPPGSGRSIAALCFAA-ALQ---CTSEGVPGCGE--CRACTTTMAGTHA 89 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VDE+R I S TG W++++++ D + AANA Sbjct: 90 DVRRIIPEGLS---------IGVDEMRSIVQIASRRPGTGRWQIVVVEDADRLTEGAANA 140 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + I T+RSRC I + S + + + L + M Sbjct: 141 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHIALVTPSVDAITQVLIEGDGMSEQ 200 Query: 208 SKRDFVKIAAYGSVARAIKIL 228 R ++ G V RA +++ Sbjct: 201 EARWAASVSG-GHVGRARRLV 220 >gi|320533630|ref|ZP_08034261.1| putative DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134155|gb|EFW26472.1| putative DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 177 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 18/150 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-SHALHD 91 M HA L G G G++ +A LQ PV C C P MA SH D Sbjct: 15 MTHAWLVTGPPGSGRSNAARAFA-AALQ----CTGPVPGCGQ--CKPCRDVMAGSHP--D 65 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L+ + +IT++E++ + TG WRVI+++ D M N LL Sbjct: 66 VVRLTTE--------KLIITMEEVKTLIGEAQRRPWTGRWRVILVEDADRMAERTTNVLL 117 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC 181 KS+EEPP + +++L + ++ +L TIRSRC Sbjct: 118 KSIEEPPPQTVWLLCTPSADDVLPTIRSRC 147 >gi|114330561|ref|YP_746783.1| DNA polymerase III, delta prime subunit [Nitrosomonas eutropha C91] gi|114307575|gb|ABI58818.1| DNA polymerase III, delta prime subunit [Nitrosomonas eutropha C91] Length = 354 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 36/185 (19%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYA-------------GHVLQ------------NPDF 64 S R HHALL +G +G GK LGF A G V +P+F Sbjct: 22 SLRRHHALLLKGRKGTGK--LGFALALVRSMLCEQVDAAGRVCGKCQDCYWFEQGLHPNF 79 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV-ITVDEIRRIRYFLS 123 R+ P+ S Q + + + K+GK + IT+ +IR + F+ Sbjct: 80 -----RLLEPEALS---VQDGTADRNSEEKQEEAGGTKSGKKPSQQITIAQIRTLDDFIY 131 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+A+ ++V++I P + MN AANALLK LEEPP +VLFILI+H + I +TI SRC Sbjct: 132 LSAHQNRYKVVLIHPAEAMNAAAANALLKKLEEPPPEVLFILIAHGTSMIPATILSRCRQ 191 Query: 184 IKFNS 188 I + Sbjct: 192 IAMPT 196 >gi|307591374|ref|YP_003900173.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7822] gi|306986228|gb|ADN18107.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7822] Length = 294 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 94/216 (43%), Gaps = 25/216 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY-----AGHVLQNPDFSKAPVR 70 G + K L+ SGR+ +A LF G G+GK T A NPD + Sbjct: 10 GQQGAIKLLTAALTSGRIPNAYLFTGVSGVGKRTTALALARALIADEERHNPDLTIIEPT 69 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D P S A L S N + + R +++IR + FL+ Sbjct: 70 YCQQDDLIPL-----SVAREQQL----SFNNQVAQIR----IEQIRELTRFLAQAPLKSQ 116 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 V +I V+ + NAA ALLKSLEEP Q L IL + ++ TI SR I F LS Sbjct: 117 RLVAIILNVESLTPNAAQALLKSLEEPGQ-ALLILTTDNIESVPPTIISRAHIIPFCPLS 175 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIA-AYGSVARAI 225 + L L L I K D V + A GSV++AI Sbjct: 176 TSKLQSVLSGLGI-----KVDPVVLNLAGGSVSKAI 206 >gi|294141342|ref|YP_003557320.1| DNA polymerase III subunit delta' [Shewanella violacea DSS12] gi|293327811|dbj|BAJ02542.1| DNA polymerase III, delta prime subunit [Shewanella violacea DSS12] Length = 304 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 52/81 (64%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+LT+ G RV +I + +N+ +ANALLK+LEEP + L +L S Sbjct: 86 IKVDQIRELCQKLTLTSQQGGRRVAVIYHSEKLNQASANALLKTLEEPGEGTLLLLQSDT 145 Query: 170 SPTILSTIRSRCLSIKFNSLS 190 +++TI+SRC S+ F S S Sbjct: 146 PSRLMATIKSRCQSVHFESPS 166 >gi|329942685|ref|ZP_08291464.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci Cal10] gi|313847864|emb|CBY16859.1| DNA polymerase III subunit gamma/tau [Chlamydophila psittaci RD1] gi|325507379|gb|ADZ19017.1| DNA polymerase III subunits gamma and tau [Chlamydophila psittaci 6BC] gi|328814945|gb|EGF84934.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci Cal10] gi|328914526|gb|AEB55359.1| DNA polymerase III, subunit gamma/tau [Chlamydophila psittaci 6BC] Length = 443 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 22/233 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L R+ HA LF G +G GK TL R L + Sbjct: 11 RKYRPQTFSEMLGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLA-RIFAKALNCKE 69 Query: 64 FSK--APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C K+++S D + + + + +++IR+I Sbjct: 70 LTPEHEPCNQC----C--VCKEISSGTSLDVIEIDGASHRG---------IEDIRQINET 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI SRC Sbjct: 115 VLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW--DSKRDFVKI--AAYGSVARAIKILHY 230 + + E + LE + G S+ + I AA GS+ A + Y Sbjct: 175 QKMHLKRIPETMIVDKLESISQAGGIETSREALLPIARAAQGSLRDAESLYDY 227 >gi|304413840|ref|ZP_07395257.1| DNA polymerase III delta prime subunit [Candidatus Regiella insecticola LSR1] gi|304283560|gb|EFL91955.1| DNA polymerase III delta prime subunit [Candidatus Regiella insecticola LSR1] Length = 346 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR HHALL G G +L + + ++ + C+ S + +H Sbjct: 42 GRGHHALLLHALPGNGAESLFYGLSRWLMCQQKQNDKSCGRCH----SCCLMLAGNHP-- 95 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ Y L P+ GK T + ++ IR+I L+ A G +VI++ V+ + A NAL Sbjct: 96 DY----YHLMPEKGK--TRLGIESIRQITEKLASHAQQGGAKVILLPQVEQLTDIAVNAL 149 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LE+PP++ F+L + +L+T+RSRC Sbjct: 150 LKTLEDPPEETYFVLGCYQPSRVLATLRSRC 180 >gi|157736546|ref|YP_001489229.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri RM4018] gi|157698400|gb|ABV66560.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri RM4018] Length = 643 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G I + LS S R+ HA LF G +G GK + A +L + + Sbjct: 17 PKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLCSQGPTSK 76 Query: 68 PVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P +C D C + A+ + H D + + + N +D+I+ + Sbjct: 77 PCDIC--DNC-----KSANASKHLDIIEMDAASNRG---------IDDIKDLIEHTKYKP 120 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ ++V +ID V + A NALLK+LEEPP V FIL + + +TI SR +F Sbjct: 121 SSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRF 180 Query: 187 NSLSENNL 194 N ++++++ Sbjct: 181 NKIAQSDV 188 >gi|156934414|ref|YP_001438330.1| DNA polymerase III subunit delta' [Cronobacter sakazakii ATCC BAA-894] gi|156532668|gb|ABU77494.1| hypothetical protein ESA_02245 [Cronobacter sakazakii ATCC BAA-894] Length = 335 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 18/159 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKA--PVRMCNPDPCSPFVKQM 84 + +GR HHA+L G+G L + + + Q P K+ R C Q+ Sbjct: 18 WQAGRGHHAVLIHALPGMGDDALIYALSRWRMCQQPQGQKSCGECRAC----------QL 67 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 H YL+ P+ GK + + +D IR I L A G +V+ I + Sbjct: 68 MRAGTHPDYYLA---EPEKGK--STLGIDAIRDISEKLYDRARLGGAKVVWIKEAAQLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 AANALLK+LEEPP+ F+L + +T+RSRC S Sbjct: 123 AAANALLKTLEEPPENTWFLLGCRVPEQLPATLRSRCFS 161 >gi|71083213|ref|YP_265932.1| DNA-directed DNA polymerase subunit gamma/tau [Candidatus Pelagibacter ubique HTCC1062] gi|71062326|gb|AAZ21329.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 557 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 22/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + +S + ++ +A LF G +GIGK T A V ++ + S +C Sbjct: 20 LIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTT----TARIVAKSLNCSNGIDNLCK 75 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + C S++ H D L + + KTG VD++R + F T ++ Sbjct: 76 EELCENC--NAISNSNHIDVLEMDAA--SKTG-------VDDVRDLIEFSRYGPTTAKYK 124 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +ID V +++ A NALLK+LEEPP+ + FI + I T+ SRC + + Sbjct: 125 IFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSL 184 Query: 193 NLYKALEQLKIMGWDSKRD-----FVKIAAYGSVARAIKIL 228 L+ + ++K + D VKI+ GSV A+ +L Sbjct: 185 ELFDFIRKIKEKENGNASDDALKLIVKISE-GSVRDALSLL 224 >gi|218709024|ref|YP_002416645.1| DNA polymerase III subunit delta' [Vibrio splendidus LGP32] gi|218322043|emb|CAV18089.1| DNA polymerase III delta' subunit [Vibrio splendidus LGP32] Length = 321 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVD++R + ++ G RVI+++P + MN +A+NALLK+LEEP +FIL + Sbjct: 88 ITVDQVRASNRWAQQSSQLGGLRVILLNPAEAMNESASNALLKTLEEPASNCIFILSTRN 147 Query: 170 SPTILSTIRSRC 181 S ++ TI SRC Sbjct: 148 SNRLMPTILSRC 159 >gi|226321772|ref|ZP_03797298.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi Bol26] gi|226232961|gb|EEH31714.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi Bol26] Length = 560 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 39/279 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L ++ +A +F G +G+GK + +A + + P M Sbjct: 19 LEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM-- 72 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC K + + + D + + + N +V +IR+I+ + + Sbjct: 73 --PCGECSNCKSIENDSSLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKY 121 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+ +ID V ++ +A NALLK++EEPP ++FI + S + TI+SRC F LS Sbjct: 122 RIYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFNFKLLSL 181 Query: 192 NNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIH 244 + +Y L+++ I D ++ + GSV A + D+I+S S I L Sbjct: 182 DKIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQ 237 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 I KM DE L +K++ L E + + IC Sbjct: 238 IR------SKMGLTNDEFL---EKLSVSILGEDVKELIC 267 >gi|154147958|ref|YP_001406806.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC BAA-381] gi|153803967|gb|ABS50974.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC BAA-381] Length = 526 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 27/193 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G + I K LS S R+ HA LF G +G GK + +A ++ C Sbjct: 15 ELIGQDTIAKSLSHALDSKRLSHAYLFSGLRGSGKTSSARIFAKDLI------------C 62 Query: 73 NPDPCSPFVKQ-----MASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P S ++ MA+ H D + + + + K +D+IR + Sbjct: 63 EKGPTSHACEECDNCIMANEGRHIDIIEMDAASHRK---------IDDIRELIEQTKYAP 113 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +++ +ID V + A+NALLK+LEEPP+ V FIL + + T+ SR +F Sbjct: 114 SVARYKIFIIDEVHMLTTEASNALLKTLEEPPEYVKFILATTNPLKLPVTVLSRTQHFRF 173 Query: 187 NSLSENNLYKALE 199 ++ N + LE Sbjct: 174 KPIATNLIMAHLE 186 >gi|145589148|ref|YP_001155745.1| DNA-directed DNA polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047554|gb|ABP34181.1| DNA polymerase III, delta prime subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 377 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 35/176 (19%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 +AL+ G+ GIGK L A V ++ P C + C F +H DF+ Sbjct: 28 NALILHGQSGIGKFNLAVELAKALVCESTSSEHKPCNHC--EACHWF--STGNHP--DFI 81 Query: 94 YL------------SYSLN--PKTG--------------KWRTVITVDEIRRIRYFLSLT 125 L Y+ + PK G K + I+++E R LS+ Sbjct: 82 ALVPETHRRLLPHAEYASDEPPKKGRAARDDLDGEASEKKEKKNISIEETRHAIESLSIG 141 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G RVI+I P++ + ++AN LLKSLEEPP +FIL++ +L TIRSRC Sbjct: 142 SHRGGNRVILIYPLEMLRHDSANTLLKSLEEPPANTIFILLADRVDRVLPTIRSRC 197 >gi|85059044|ref|YP_454746.1| DNA polymerase III delta prime subunit [Sodalis glossinidius str. 'morsitans'] gi|84779564|dbj|BAE74341.1| DNA polymerase III delta prime subunit [Sodalis glossinidius str. 'morsitans'] Length = 332 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 14/150 (9%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 HHALL + G G+A L + + ++ + PD SK+ +C+ + M + DF Sbjct: 24 HHALLLHSQPGNGEAPLCYALSRWLMCRQPDGSKS-CGVCH------SCRLMMAGNHPDF 76 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 Y P+ G R + VD IR I + A G +V+ + + + AANALLK Sbjct: 77 ----YQPEPEKG--RQSLGVDNIRAIIDSVYGRARQGGVKVVWLPHAELLTEQAANALLK 130 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCL 182 +LEEPP F+L +L T+RSRCL Sbjct: 131 TLEEPPTDTYFLLGCQTPSRLLPTLRSRCL 160 >gi|238783570|ref|ZP_04627591.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970] gi|238715448|gb|EEQ07439.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970] Length = 656 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPQTFADVVGQQHVLTALANSLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--- 120 + P +C + L + G++ +I +D R + Sbjct: 68 ITATPCGIC-----------------------ANCLEIEQGRFVDLIEIDAASRTKVEDT 104 Query: 121 -----FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + Sbjct: 105 RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPV 164 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TI SRCL + + LE++ +++ S ARA+++L D Sbjct: 165 TILSRCLQFHLKVIDVEVIRALLEKI-----------LQVEQISSDARALQLLARAADGS 213 Query: 236 ISSYIDL 242 + + L Sbjct: 214 MRDALSL 220 >gi|71892083|ref|YP_277813.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796189|gb|AAZ40940.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 698 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + ++ + ++HHA + G +G+GK T+ +A + Sbjct: 8 RKWRPKKFSDIVGQEHIIQAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAKGLNCEQG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + CN C K + D + + + K R + ++Y S Sbjct: 68 TTYTMCGQCNN--C----KDIELGCFIDLIEIDAASRTKVEDTREFLD-----NVQYMPS 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++V +ID V ++R++ NALLK+LEEPP V FIL++ + TI SRCL Sbjct: 117 ----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPTHVKFILVTTEYQKLPETILSRCL 171 >gi|325972845|ref|YP_004249036.1| DNA polymerase III subunits gamma and tau [Spirochaeta sp. Buddy] gi|324028083|gb|ADY14842.1| DNA polymerase III, subunits gamma and tau [Spirochaeta sp. Buddy] Length = 543 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 21/177 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 L G E + + GR+ HA LF G +G+GK T R L Q P + P Sbjct: 18 LVGQEFVVSTIKHAIEQGRIAHAYLFSGPRGVGK-TSSARILARALNCEQGP--TATPCG 74 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C+ K++ D + + + N +V++IR+I+ + Sbjct: 75 VCS------NCKEITQGNNVDVIEIDGASN---------TSVNDIRQIKDEVLFPPQASK 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++ +ID V ++ +A NALLK++EEPP ++FI + + +TIRSRC F Sbjct: 120 YKIYIIDEVHMLSTSAFNALLKTIEEPPAYIIFIFATTELQKVPATIRSRCQQFHFQ 176 >gi|257465435|ref|ZP_05629806.1| DNA polymerase III subunit delta' [Actinobacillus minor 202] gi|257451095|gb|EEV25138.1| DNA polymerase III subunit delta' [Actinobacillus minor 202] Length = 328 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 ++ + GR HHALLF+ + G+G TL A +L + P C S + Q Sbjct: 15 ITSTFLQGRGHHALLFKTDVGLGTETLIQHLAQWLLCQQKNVEEPCFQCK----SCLLLQ 70 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H D L+ N G VD+IR + L A V+ I + + Sbjct: 71 SGNHP--DLHLLAPIENKDIG-------VDQIREMTLKLQTFAQQSGNVVVYIRGAERLT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEP + V F+L + +++TI+SRC Sbjct: 122 EAAANALLKTLEEPREGVYFLLETALQAKMMATIQSRC 159 >gi|221218167|ref|ZP_03589633.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 72a] gi|225549648|ref|ZP_03770614.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 118a] gi|221192115|gb|EEE18336.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 72a] gi|225369925|gb|EEG99372.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 118a] Length = 560 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFSDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGENVKELIC 267 >gi|317177452|dbj|BAJ55241.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F16] Length = 578 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 SVP---C--DTCPQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYRPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|300790720|ref|YP_003771011.1| DNA polymerase III subunits gamma/tau [Amycolatopsis mediterranei U32] gi|299800234|gb|ADJ50609.1| DNA polymerase III subunit gamma/tau [Amycolatopsis mediterranei U32] Length = 730 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVVGQEHVTEPLRTALSAGRINHAYLFSGPRGCGK-TSSARIMARSL---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PDPC K +A G VD+ R +R Sbjct: 63 CAKGPT----PDPCGECNSCKALAPEGPGSVDVTELDAASHGG-------VDDARELRDK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ V+FI + +L+TIRSR Sbjct: 112 AFYAPAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHVIFIFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ 200 F + +++ LE+ Sbjct: 172 HHYPFRLIPPSSMRNLLER 190 >gi|315635707|ref|ZP_07890970.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri JV22] gi|315480004|gb|EFU70674.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri JV22] Length = 644 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 17/184 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + L G I + LS S R+ HA LF G +G GK + A +L + + P + Sbjct: 21 EDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLCSQGPTSKPCDI 80 Query: 72 CNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C + A+ + H D + + + N +D+I+ + ++ Sbjct: 81 C--DNC-----KSANASKHLDIIEMDAASNRG---------IDDIKDLIEHTKYKPSSAR 124 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V + A NALLK+LEEPP V FIL + + +TI SR +FN ++ Sbjct: 125 FKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRFNKIA 184 Query: 191 ENNL 194 ++++ Sbjct: 185 QSDV 188 >gi|218249810|ref|YP_002374972.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi ZS7] gi|223888742|ref|ZP_03623333.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 64b] gi|218164998|gb|ACK75059.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi ZS7] gi|223885558|gb|EEF56657.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 64b] Length = 560 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 39/279 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L ++ +A +F G +G+GK + +A + + P M Sbjct: 19 LEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM-- 72 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC K + + + D + + + N +V +IR+I+ + + Sbjct: 73 --PCGECSNCKSIENDSSLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKY 121 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+ +ID V ++ +A NALLK++EEPP ++FI + S + TI+SRC F LS Sbjct: 122 RIYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSL 181 Query: 192 NNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIH 244 + +Y L+++ I D ++ + GSV A + D+I+S S I L Sbjct: 182 DKIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQ 237 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 I KM DE L +K++ L E + + IC Sbjct: 238 IR------SKMGLTNDEFL---EKLSVSILGEDVKELIC 267 >gi|299529316|ref|ZP_07042755.1| DNA-directed DNA polymerase [Comamonas testosteroni S44] gi|298722694|gb|EFI63612.1| DNA-directed DNA polymerase [Comamonas testosteroni S44] Length = 341 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 43/231 (18%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP F+L S A Sbjct: 110 IRVEAMRDAVEFCQRTSARGRGKAVLVYPAEQMNAITANALLKTLEEPPGDTRFVLASEA 169 Query: 170 SPTILSTIRSRCLS--------------IKFNSLSE---------------NNLYKALEQ 200 + +L TIRSRCL+ ++ L+E + L A + Sbjct: 170 AHQLLPTIRSRCLTHTMTWPAAAEAVQWLQAQGLNEPDAAAALQAAGGRPGDALRMAADS 229 Query: 201 LKIMGWD------SKRDFVKIAAYGSVARAIKILHYDCDKIIS-------SYIDLIHIPR 247 K W +K D +AA+ V A++ L C +++ Y +P Sbjct: 230 GKAAAWAQLPRQLAKGDVAALAAFAPV-DAVQALQKICHDLMALAGGGEPRYFSPADLPG 288 Query: 248 QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + + + + EL+ + F +++ + A+A +SG+ A Sbjct: 289 KPLPMALLAEWSRELVQAARTADHPFNAGLMMEALASRARAVLISGKAARA 339 >gi|325997588|gb|ADZ49796.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 2017] Length = 591 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCETGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ +S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|317968089|ref|ZP_07969479.1| DNA polymerase III subunit delta' [Synechococcus sp. CB0205] Length = 318 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 19/202 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G L+ R+ A LF G G+G+ R+ V+ D S + R Sbjct: 8 LLGQPQAVALLTAGLQHQRLAPAYLFCGPDGVGRRLAALRFLEGVIAGLDGSPSVRRRLQ 67 Query: 74 ----PD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 PD P Q+ + + +S P+ + ++++R + FL+ Sbjct: 68 DGNHPDLLWVEPTYSDKGQLVPASQAEAAGVSRKAPPQ-------LRLEQVRAVSQFLAR 120 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP-TILSTIRSRCLS 183 +++++ V+ M AANALLK+LEEP +L +L ASP +LSTIRSRC S Sbjct: 121 RPVESPRCLVVMETVEAMAEGAANALLKTLEEPGDGMLILLT--ASPDRLLSTIRSRCQS 178 Query: 184 IKFNSLSENNLYKALEQLKIMG 205 I F L L L+QL G Sbjct: 179 ISFARLEPQLLEAVLQQLGHGG 200 >gi|303241045|ref|ZP_07327555.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302591470|gb|EFL61208.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 333 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 27/222 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 + G ++ L HA +F G +GIGK + +A +L + + V C Sbjct: 10 IIGQNEVVSSLKAVLRDDSARHAYIFSGPEGIGKRMVARIFASTLLCS---GRNSVERCE 66 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N PC F +S DF Y + + I+VD+IRR++ + + + Sbjct: 67 NCQPCHLF----SSGNNPDF----YVVEAEGAS----ISVDDIRRMQQDICIRPMYSGKK 114 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +I D M A N +LK+LEEPP + IL + S ++L TIRSR + F ++ Sbjct: 115 VYLIAEADKMTVQAQNCILKTLEEPPGYAVIILTTSNSNSLLETIRSRSIIYNFRKNTDE 174 Query: 193 N-----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L K L++L+ + DF+ A G +A+ ++ Sbjct: 175 EVKSCILKKELKELEGI------DFIVSYADGVPGKALTLIE 210 >gi|329122331|ref|ZP_08250919.1| DNA-directed DNA polymerase III subunit delta' [Haemophilus aegyptius ATCC 11116] gi|327473892|gb|EGF19309.1| DNA-directed DNA polymerase III subunit delta' [Haemophilus aegyptius ATCC 11116] Length = 326 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 25/174 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L A ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSSSLLATIYSRC 158 >gi|205372017|ref|ZP_03224835.1| DNA polymerase III subunit delta' [Bacillus coahuilensis m4-4] Length = 334 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 69/158 (43%), Gaps = 14/158 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEGE+G GK A + P CN C Q H Sbjct: 27 RIGHAYLFEGERGTGKLDTAILLAKRMFCETPVEYRPCEKCNN--C-----QRIQRRNHP 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +++ + P I D+IR ++ S T + +ID D M NAAN+LL Sbjct: 80 DVHI---IEPDG----LSIKKDQIRSLQEEFSKTGVESKHKFYIIDHGDKMTVNAANSLL 132 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 K LEEP + I+I+ IL TI SRC I F SL Sbjct: 133 KFLEEPEADTVAIIITEQQHRILPTILSRCQMISFQSL 170 >gi|218289068|ref|ZP_03493305.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius LAA1] gi|218240893|gb|EED08071.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius LAA1] Length = 583 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 21/204 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 RA+ P + L G + + L+ SG++ HA LF G +G GK + A V LQ Sbjct: 8 RAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAVNCLQP 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + P C + C Q S+ D + + N VDEIR +R Sbjct: 68 RDGFE-PCNAC--EACMSI--QRGSNV--DVQEIDAASN---------RGVDEIRDLRDH 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V ++D V + A NALLK+LEEPP VLF+L + + +TI SRC Sbjct: 112 VHYLPTMAKKKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRC 171 Query: 182 LSIKFNSLSENNLYKALEQLKIMG 205 F ++ + +E+L+++ Sbjct: 172 QRFDFRRIAPEAI---VERLRLVA 192 >gi|27904904|ref|NP_778030.1| DNA polymerase III subunit gamma [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340040|sp|Q89A95|DPO3X_BUCBP RecName: Full=DNA polymerase III subunit gamma gi|27904302|gb|AAO27135.1| DNA polymerase III subunit gamma [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 370 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + + P + G + I +S GR+HHA LF G +G GK T+ A + Sbjct: 5 ILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P R C+ C ++ D + + K + ++ IRY Sbjct: 65 KLGISPNPCRKCSN--CV----EVEQGNFIDLYEVDAASRTKVEDMKELLD-----NIRY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S G +++ +ID V ++R + N LLK++EEPPQ + FIL + I TI SR Sbjct: 114 LPS----KGRFKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL + ++ N + + + Sbjct: 170 CLQFQLKPINLNEIVACISNI 190 >gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense DSM 12168] Length = 672 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 19/189 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E + L SG++ HA LF G +G GK T R L + K P + Sbjct: 18 LVGQEFVAATLKNAIQSGKIAHAYLFAGPRGCGK-TSSARILAKAL---NCEKGPAAV-- 71 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC +++ + D + + + N +V+++R+I+ + N+ + Sbjct: 72 --PCGECAACREITRGSSLDVIEIDGASN---------TSVNDVRQIKDEVLFPPNSCRY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SRC F ++ Sbjct: 121 KIYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQQFHFRLVAV 180 Query: 192 NNLYKALEQ 200 + + L Q Sbjct: 181 EQIKELLAQ 189 >gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris aestuarii DSM 271] gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris aestuarii DSM 271] Length = 617 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 7/201 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + R+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 R +PC + DF SLN + +VD+IR++R Sbjct: 65 QKMIDDPVYRQEVTEPCG------ECESCLDF-DAGTSLNISEFDAASNNSVDDIRQLRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI SR Sbjct: 118 NVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSR 177 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + L+ + Sbjct: 178 CQRFNFKRIPIGEIQSQLQMI 198 >gi|116493222|ref|YP_804957.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC 25745] gi|116103372|gb|ABJ68515.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC 25745] Length = 581 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L + + HA LF G +G GK + +A V N Sbjct: 8 RVWRPQKFDDMVGQDVVTRTLKNALITEQTSHAYLFTGPRGTGKTSAAKIFAKAV--NCH 65 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K + +PC+ V K + L+D + + + N V+EIR IR Sbjct: 66 YLK------DGEPCNECVTCKAITEGTLNDVIEIDAASNNG---------VEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V ++D V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIVDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLY 195 F ++ Y Sbjct: 171 QRFDFKRITPAQSY 184 >gi|148657688|ref|YP_001277893.1| DNA polymerase III subunit delta' [Roseiflexus sp. RS-1] gi|148569798|gb|ABQ91943.1| DNA polymerase III, delta prime subunit [Roseiflexus sp. RS-1] Length = 351 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 16/197 (8%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 N + GHE +FL + R+ HA L G +G+GKA L R Sbjct: 7 NWGIIGHEWAVEFLRRSIAGNRIAHAYLIGGPEGVGKALLALRL---------AQALNCE 57 Query: 71 MCNPDPC----SPFVKQMASHA---LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 PDPC S + +H L + + + +D +R + + Sbjct: 58 QGTPDPCLRCRSCQRIERGNHPDVRLTGMAMQAAGAKADEAARQKEVKIDTVREWQRDMM 117 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G RV ++ + ++ A+NA+LK+LEEPP IL++H + ++L T+ SRC Sbjct: 118 LKPYEGRRRVFILHDAEKLSEAASNAMLKTLEEPPPYATLILVAHTAGSLLPTVVSRCQL 177 Query: 184 IKFNSLSENNLYKALEQ 200 ++ L + AL Q Sbjct: 178 LRLRPLPRAQVAAALRQ 194 >gi|88807103|ref|ZP_01122615.1| DNA polymerase III subunit delta [Synechococcus sp. WH 7805] gi|88788317|gb|EAR19472.1| DNA polymerase III subunit delta [Synechococcus sp. WH 7805] Length = 324 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 16/211 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----QNPDFSKAPV 69 L G + L R+ A LF G G+G+ R+ VL Q+P + Sbjct: 9 LQGQPLATQLLQSALALQRLAPAYLFSGPDGVGRRLAALRFMEGVLSGGSQDPRERRRLE 68 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLTA 126 +PD +V+ SH +S S G R + +++IR + +L+ Sbjct: 69 ERNHPDLL--WVEPTYSH---QGRLISRSEAEAAGVNRRTPPQVRLEQIRDLGRYLARQP 123 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +++++ + M AANALLK+LEEP L IL+S A +L+TIRSRC I+F Sbjct: 124 LESARGLVVLEQPEAMAEGAANALLKTLEEPGHG-LLILLSAAPDRLLTTIRSRCQQIRF 182 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 L + ++ L QL D+ ++IAA Sbjct: 183 TRLPDGVMHAVLAQLPD---DAGHRALEIAA 210 >gi|170754521|ref|YP_001779654.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B1 str. Okra] gi|169119733|gb|ACA43569.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B1 str. Okra] Length = 541 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 42/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +IS+ +D++ + E L+ I ++ + + +I D ++ Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLLRITNSIIEKDIEKSMRIIEDIVL 273 >gi|224532486|ref|ZP_03673111.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi WI91-23] gi|225548674|ref|ZP_03769721.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 94a] gi|226321094|ref|ZP_03796636.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 29805] gi|224512558|gb|EEF82934.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi WI91-23] gi|225370704|gb|EEH00140.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 94a] gi|226233504|gb|EEH32243.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 29805] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum Bf] gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum Ba4 str. 657] gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum Bf] gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Ba4 str. 657] Length = 541 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 42/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIKNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +IS+ +D++ + E L+ I ++ + + +I D ++ Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|216264904|ref|ZP_03436896.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 156a] gi|215981377|gb|EEC22184.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 156a] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|195942043|ref|ZP_03087425.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi 80a] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|91788381|ref|YP_549333.1| DNA-directed DNA polymerase [Polaromonas sp. JS666] gi|91697606|gb|ABE44435.1| DNA-directed DNA polymerase [Polaromonas sp. JS666] Length = 379 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 44/74 (59%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD R F T + G +V+++ P + MN AN LLK+LEEPP V FIL + A Sbjct: 122 IKVDAAREAVSFTQFTRSRGTTKVVLVFPAERMNHITANTLLKTLEEPPGPVKFILATDA 181 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 182 AHQLLPTIRSRCLG 195 >gi|169834551|ref|YP_001693253.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum B1 str. Okra] gi|169123099|gb|ACA46934.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum B1 str. Okra] Length = 472 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 25/227 (11%) Query: 10 YNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 Y R+F G + K L +G + HA LF G +G GK T +A V Q+ D + Sbjct: 6 YRPRIFKYVVGQGENTKILLNQVRTGHIGHAYLFCGNRGSGKTTTARIFAKAVNQH-DKN 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P+ + K++ + D + L + G +++IR I Sbjct: 65 GEPLD-------NELSKKIDAGNCIDIVELDAA--SHNG-------IEDIRNIIEQAQYA 108 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +RV +ID V ++ +A NA LK LEEPP+ V+FIL + + TI SRC Sbjct: 109 PSECKYRVFIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITILSRCQRFD 168 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + N++ L E KI + + I A G++ AI IL Sbjct: 169 FKRIDVANIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISIL 215 >gi|307637401|gb|ADN79851.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 908] gi|325995993|gb|ADZ51398.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 2018] Length = 591 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCETGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ +S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|224533668|ref|ZP_03674257.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi CA-11.2a] gi|224513341|gb|EEF83703.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi CA-11.2a] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFSDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|111021330|ref|YP_704302.1| DNA polymerase III subunit delta' [Rhodococcus jostii RHA1] gi|110820860|gb|ABG96144.1| probable DNA-directed DNA polymerase III delta prime subunit [Rhodococcus jostii RHA1] Length = 404 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 26/199 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGR---------MHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 RL G ED+E L+ + R M H+ LF G G G++ +A + D Sbjct: 6 RLVGQEDVEAELTAAATAARRGVGAMGSSMTHSWLFTGPPGSGRSVAAQCFAAALQCTSD 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V C C MA + L+ I+V E+R I + Sbjct: 66 G----VPGCGV--CHACTTAMAGTHGDVRQVVPEGLS---------ISVKEMRAIVQTAA 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA-SPTILS-TIRSRC 181 +TG W++++++ D + AANALLK +EEPP + +F+L + + P +S T+RSRC Sbjct: 111 RRPSTGRWQIVVVEDADRLTEGAANALLKVVEEPPDRTVFLLCAPSVDPQDISVTLRSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ 200 + + S +++ K L + Sbjct: 171 RHVHLVTPSADSIAKVLRE 189 >gi|30350173|gb|AAP31481.1| putative DNA polymerase III [Western X phytoplasma] Length = 579 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 128/281 (45%), Gaps = 39/281 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + G E + K L ++HH L G +G+GK TL A + QNP C Sbjct: 18 MVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAKAINCQNPQGQDC----C 73 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N V Q A+ + + SY+ VDEIR ++ + + ++ Sbjct: 74 NECEFCLVVHQKANLDVIEIDGASYN------------GVDEIRELKDTVQYKPHLLKYK 121 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ NA NALLK LEEPP V+FILI+ I TI SR +L++ Sbjct: 122 VYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTDE 181 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHIP 246 + L E+ KI+ D IAAY GS+ A+ +L DKI S I+LI Sbjct: 182 EIKTKLNPIVEEEKILITDEA--LTTIAAYSDGSMRDALNLL----DKISSYKINLIEKK 235 Query: 247 RQEYAL-----QKMQQIADELLSQD--QKIAFDFLIEFILK 280 E L K+ Q+A+ L+ D Q IAF +E ILK Sbjct: 236 DIEKMLGVISESKINQLAEYLVQPDINQMIAF---LELILK 273 >gi|15594806|ref|NP_212595.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi B31] gi|2688379|gb|AAC66831.1| DNA polymerase III, subunits gamma and tau (dnaX) [Borrelia burgdorferi B31] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|110637639|ref|YP_677846.1| DNA polymerase III subunits tau/gamma [Cytophaga hutchinsonii ATCC 33406] gi|110280320|gb|ABG58506.1| DNA polymerase III, tau and gamma subunits [Cytophaga hutchinsonii ATCC 33406] Length = 381 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 29/279 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L + + A LF G +G+GK T R + + Sbjct: 9 RKYRPATFDSVVGQSHITTTLKNAIKNNHLAQAFLFCGPRGVGKTT-NARILAKTINCTN 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + A + C D C K ++A + L + N +VD+IR + + Sbjct: 68 IT-ADIEAC--DECES-CKSFNNNASFNIQELDAASNN---------SVDDIRNLVEQVR 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 115 YPPQYGKYKIYIIDEVHMLSTAAFNAFLKTLEEPPAYAIFILATTEKHKIIPTILSRCQI 174 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCDKI 235 FN + ++ + L + I + A G++ A+ I+ + D Sbjct: 175 FDFNRIQIKDIAEHLAGIAVKENIKAEKEALHLIAQKADGALRDALSMFDLIVTFSSDNT 234 Query: 236 IS--SYIDLIHIPRQEYALQ-----KMQQIADELLSQDQ 267 I+ ID +HI +Y + Q +A+ LL+ D+ Sbjct: 235 ITYKCAIDNLHILDYDYYFKLTDMLNTQDVANSLLTFDE 273 >gi|312148351|gb|ADQ31010.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi JD1] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFSDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|257458486|ref|ZP_05623623.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii ATCC 35580] gi|257444083|gb|EEV19189.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii ATCC 35580] Length = 416 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 15/179 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + L + +G++ HA LF G +G GK + A + Sbjct: 12 PQRFEDLLGQDFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAKALNCETGTVAT 71 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P +C C ++ + + D + + + N +V+++R+I+ + N Sbjct: 72 PCGVCTS--CC----EITAGSSIDVIEIDGASN---------TSVNDVRQIKDEILFPPN 116 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 T +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SRC F Sbjct: 117 TSRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQHFNF 175 >gi|187776529|ref|ZP_02993002.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC 15579] gi|187775188|gb|EDU38990.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC 15579] Length = 544 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 33/244 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 11 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 61 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 62 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 115 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 170 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 171 SRCQRFDFRRIRNEEIFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 226 Query: 235 IISS 238 +IS+ Sbjct: 227 VIST 230 >gi|217976468|ref|YP_002360615.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris BL2] gi|217501844|gb|ACK49253.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris BL2] Length = 628 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 11/233 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS + GR+H A + G +G+GK T +L Sbjct: 37 VLARKYRPSSFDDLIGQEAMVRTLSNAFDLGRIHQAYILTGVRGVGKTT-----TARILA 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P P P + MA H + S ++ + +D++R I Sbjct: 92 RAFNYELPTGDGRPAVDGPTI-HMAGFGAHCQAIMESRHVDVIEMDAASHTGIDDVREII 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V +ID V ++R A N LLK+LEEPP V F+ + + T+RS Sbjct: 151 EGARYKPVMARFKVYIIDEVHMLSRQAFNGLLKTLEEPPDHVKFLFATTEIEKVPVTVRS 210 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 RC + L L + K+ D + AA GSV A+ +L Sbjct: 211 RCQRFDLRRIDAGELSTFLATICAREKVAIEDEALALIARAAEGSVRDALSLL 263 >gi|33592906|ref|NP_880550.1| DNA polymerase III, delta' subunit [Bordetella pertussis Tohama I] gi|33572554|emb|CAE42134.1| DNA polymerase III, delta' subunit [Bordetella pertussis Tohama I] Length = 350 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 117 IRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKVLEEPPAHTVFLLVADA 176 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L T+ SRC + + S +AL+ L G + D+ Sbjct: 177 PDRLLPTLVSRCRRLPLPTPSAG---QALQWLGEQGVEPAADW 216 >gi|23097494|ref|NP_690960.1| DNA polymerase III subunit delta' [Oceanobacillus iheyensis HTE831] gi|22775717|dbj|BAC11995.1| DNA polymerase III delta subunit [Oceanobacillus iheyensis HTE831] Length = 329 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA L +GE+G GK + A ++ P CN K++ S Sbjct: 25 GRVSHAYLLQGERGTGKRDIALLLAKYLFCLHREGANPCHTCNN------CKRIDSGNHP 78 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D ++ G+ I ++++R ++ + + +V +I D + NAAN L Sbjct: 79 DLHWIE-----PDGQ---SIKIEQVRNLQKEFTYSGMESNQKVYVIQDADTLTVNAANRL 130 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LK LEEP ++ I+++ +ILSTIRSRC I+ L + + + L+ Sbjct: 131 LKFLEEPSKQTTAIMLTENGHSILSTIRSRCQIIELQPLPPDVMNQRLQ 179 >gi|223044428|ref|ZP_03614461.1| DNA polymerase III delta' subunit [Staphylococcus capitis SK14] gi|314932706|ref|ZP_07840076.1| putative DNA polymerase III, delta prime subunit [Staphylococcus caprae C87] gi|222442217|gb|EEE48329.1| DNA polymerase III delta' subunit [Staphylococcus capitis SK14] gi|313654536|gb|EFS18288.1| putative DNA polymerase III, delta prime subunit [Staphylococcus caprae C87] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D Sbjct: 2 DEQQQLAHAYHSNKLSHAYLFEGDDAQTMKHVAINFAKLIL------------CAEDSQC 49 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +H DF+Y+S N I ++I R+ ++++ G ++V +I+ Sbjct: 50 ELKVDTFNHP--DFMYVSSDEN--------TIKKEQIERLVHYMNQLPIEGRYKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 + + N++LK LEEPP+ + IL+S IL TI SRC + F + Sbjct: 100 FEKLTVQGENSILKFLEEPPENTIAILLSTKPEQILDTIHSRCQHVYFKPI 150 >gi|193216548|ref|YP_001999790.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis 158L3-1] gi|193001871|gb|ACF07086.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis 158L3-1] Length = 647 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 18/189 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E+I + L+ ++ HA LF G G GK ++ +A + N Sbjct: 10 RQYRPNKFDEVKGQENIIRTLTNIIKMQKISHAYLFCGPHGTGKTSVAKIFANTL--NCS 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S + +PC ++ + + D + + + N TG +D+IR +R + Sbjct: 68 HSSDLL-----EPCQECIENIDRNL--DIIEIDAASN--TG-------IDDIRELREKIK 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++++A NALLK+LEEPP+ +FIL + I TI SR Sbjct: 112 HLPTHSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTILSRVQR 171 Query: 184 IKFNSLSEN 192 F + EN Sbjct: 172 FNFKRIDEN 180 >gi|51598717|ref|YP_072905.1| DNA polymerase III subunits gamma and tau [Borrelia garinii PBi] gi|51573288|gb|AAU07313.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBi] Length = 560 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 30/265 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L ++ +A +F G +G+GK + +A + + P CN Sbjct: 19 LEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKNGPTVMPCGECN 78 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K + + + D + + + N +V +IR+I+ + +R+ Sbjct: 79 N------CKSIENDSSLDVIEIDGASN---------TSVQDIRQIKEEIMFPPAISKYRI 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ +A NALLK++EEPP ++FI + S + TI+SRC F LS Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEK 183 Query: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII---SSYIDLIHIP 246 +Y L+++ I D ++ + GSV A + D+++ SS I L I Sbjct: 184 IYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLF----DQVVSFTSSDIKLDQI- 238 Query: 247 RQEYALQK---MQQIADELLSQDQK 268 R + L +++++ +LS+D K Sbjct: 239 RSKMGLTNDEFLEKLSASILSEDVK 263 >gi|33596204|ref|NP_883847.1| DNA polymerase III, delta' subunit [Bordetella parapertussis 12822] gi|33573207|emb|CAE36862.1| DNA polymerase III, delta' subunit [Bordetella parapertussis] Length = 350 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 117 IRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKVLEEPPAHTVFLLVADA 176 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L T+ SRC + + S +AL+ L G + D+ Sbjct: 177 PDRLLPTLVSRCRRLPLPTPSAG---QALQWLGEQGVEPAADW 216 >gi|207091826|ref|ZP_03239613.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori HPKX_438_AG0C1] Length = 586 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVPC-----DTCTQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|331005832|ref|ZP_08329187.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC1989] gi|330420352|gb|EGG94663.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC1989] Length = 740 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFREMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P CN CS + ++ D + + + K V++ R + Sbjct: 65 EVGVSSVP---CNE--CSSCI-EINEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE 199 CL +++ + L+ Sbjct: 170 CLQFNLKNMNPEKIVSHLQ 188 >gi|297538539|ref|YP_003674308.1| DNA polymerase III subunit delta' [Methylotenera sp. 301] gi|297257886|gb|ADI29731.1| DNA polymerase III, delta prime subunit [Methylotenera sp. 301] Length = 334 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 24/189 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R HALL G GIGK + +L D A C+ C+ F ++ SH Sbjct: 24 RRAHALLLHGRAGIGKYDFARELSQSLLCAYQDDLGHA-CGTCSS--CNWFKEE--SHPD 78 Query: 90 HDFLYLSYSLNPKTGKWRTV-------ITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDG 141 L +P I+V +IR + FLS++++ + R+++I P + Sbjct: 79 FRLLSPEQESDPDEEGATAKKTKKKTQISVAQIRDLSDFLSMSSHRSDGARIVLIHPAEA 138 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS---------LSEN 192 +N +ANALLK LEEP + V+FIL++H +L TI SRC I LSE Sbjct: 139 LNLASANALLKMLEEPAEGVVFILVAHQLQRLLPTIISRCQKISMPMPTDTQSLAWLSEQ 198 Query: 193 NLYKALEQL 201 + A EQL Sbjct: 199 GVPNAKEQL 207 >gi|227502486|ref|ZP_03932535.1| DNA polymerase III subunit delta [Corynebacterium accolens ATCC 49725] gi|227076779|gb|EEI14742.1| DNA polymerase III subunit delta [Corynebacterium accolens ATCC 49725] Length = 370 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 28/174 (16%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV-KQMASHAL-- 89 M H+ LF G G G++ +A + MC DP P K A A+ Sbjct: 9 MSHSWLFTGPPGSGRSLAAIDFAAAL------------MCT-DPEEPGCGKCEACRAVLG 55 Query: 90 ---HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H L L ++P+ +I VD +R + + WRV++ + D +N N Sbjct: 56 TKQHTDLVL---VDPQ----EVIIPVDTVREVIGRAASLPTVAPWRVVIFNNADRLNNNG 108 Query: 147 ANALLKSLEEPPQKVLFILI--SHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ANALLK++EEPP++ + I+ S A T+RSRC + S S N+ L Sbjct: 109 ANALLKTVEEPPERTVIIMCAPSDAPEDFSQTLRSRCRHLYIPSPSVENIVSQL 162 >gi|293390054|ref|ZP_06634388.1| DNA polymerase III subunit tau [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950588|gb|EFE00707.1| DNA polymerase III subunit tau [Aggregatibacter actinomycetemcomitans D7S-1] Length = 681 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + C+ K D + + + K R ++ ++Y Sbjct: 65 VSGVTAEPCGVC--EHCNAIEK----GNFIDLIEIDAASRTKVEDTRELLD-----NVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 KPVL----GRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPYKLPVTILSR 169 Query: 181 CLSIKFNSLSENNL 194 C+ +L ++ + Sbjct: 170 CMQFHLKALEQSQI 183 >gi|33601615|ref|NP_889175.1| DNA polymerase III, delta' subunit [Bordetella bronchiseptica RB50] gi|33576052|emb|CAE33131.1| DNA polymerase III, delta' subunit [Bordetella bronchiseptica RB50] Length = 350 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 117 IRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKVLEEPPAHTVFLLVADA 176 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L T+ SRC + + S +AL+ L G + D+ Sbjct: 177 PDRLLPTLVSRCRRLPLPTPSAG---QALQWLGEQGVEPAADW 216 >gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gamma/tau [Tsukamurella paurometabola DSM 20162] gi|296029817|gb|ADG80587.1| DNA polymerase III, subunits gamma and tau [Tsukamurella paurometabola DSM 20162] Length = 737 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 90/216 (41%), Gaps = 39/216 (18%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS SGR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNP----DPCSPF---VKQM--ASHALHDFLYLSYSLNPKTGKWRTVIT 111 P + P +CN P P V +M ASH Sbjct: 64 GP--TSTPCGVCNSCVALAPGGPGNLDVTEMDAASHG----------------------G 99 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R +RV ++D + NALLK +EEPP+ ++FI + Sbjct: 100 VDDARELRDRAFYAPAESRYRVFIVDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPE 159 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 +L+TIRSR F L+ N + LE KI G + Sbjct: 160 KVLTTIRSRTHHYPFRLLAPNVMRPLLE--KITGAE 193 >gi|109898433|ref|YP_661688.1| DNA-directed DNA polymerase [Pseudoalteromonas atlantica T6c] gi|109700714|gb|ABG40634.1| DNA-directed DNA polymerase [Pseudoalteromonas atlantica T6c] Length = 300 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 73/161 (45%), Gaps = 16/161 (9%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFV 81 LSQ + +HHALL +GE+GIGK + +L P SK N PC Sbjct: 12 LSQRAATLSLHHALLLKGEKGIGKTEFAQQLGRFLLCANKPALSKD-----NLGPCGHCQ 66 Query: 82 KQMASHAL-HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + S A H LY S I VD IR LS +A +V++I Sbjct: 67 SCLLSAAGNHPDLYEIRS--------DKQIGVDAIRDAIKKLSGSAQLSGAKVLLIHDAH 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 M ++ANALLK+LEEP +L+S +L TI SRC Sbjct: 119 TMTESSANALLKTLEEPTNNTFLLLLSSHPERLLPTILSRC 159 >gi|307243762|ref|ZP_07525899.1| DNA polymerase III, subunit gamma and tau [Peptostreptococcus stomatis DSM 17678] gi|306492861|gb|EFM64877.1| DNA polymerase III, subunit gamma and tau [Peptostreptococcus stomatis DSM 17678] Length = 560 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +VD+IR +R + T ++V +ID V +++ A NALLK+LEEPP V+FIL + Sbjct: 99 SVDDIRELRDTVKYTPANSKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEP 158 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAA---YGSVAR 223 I +TI SRC F +S +L ++++K++ D D ++I A GSV Sbjct: 159 NKIPATILSRCQRFDFKRVSVGDL---IDRMKLICQSESIDIDEDALRIIARNGQGSVRD 215 Query: 224 AIKIL 228 A+ IL Sbjct: 216 ALSIL 220 >gi|261822055|ref|YP_003260161.1| DNA polymerase III subunit delta' [Pectobacterium wasabiae WPP163] gi|261606068|gb|ACX88554.1| DNA polymerase III, delta prime subunit [Pectobacterium wasabiae WPP163] Length = 336 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPFVKQM 84 Y +GR HHA+L G+G +L + + ++ Q PD K+ CN M Sbjct: 18 YQAGRGHHAVLLHALPGMGDESLIYALSRWLICQRPDGMKSCGQCHSCN---------LM 68 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 + D+ + L+P+ GK + VD +R + + + G +VI + + + Sbjct: 69 TAGTHPDW----HVLSPEKGK--HSLGVDPVRDVVEKVYQHSRQGGAKVIWLASAEQLTE 122 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 AANALLK+LEEPP+ F+L +L+T+RSRCL Sbjct: 123 AAANALLKTLEEPPKNTFFLLGCREPVRLLATLRSRCL 160 >gi|261868269|ref|YP_003256191.1| hypothetical protein D11S_1608 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413601|gb|ACX82972.1| hypothetical protein D11S_1608 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 467 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + C+ K D + + + K R ++ ++Y Sbjct: 65 VSGVTAEPCGVC--EHCNAIEK----GNFIDLIEIDAASRTKVEDTRELLD-----NVQY 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 114 KPVL----GRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSR 169 Query: 181 CLSIKFNSLSENNL--YKA--LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 C+ +L ++ + Y A L Q +I D + AA GS+ ++ + Sbjct: 170 CMQFHLKALEQSQIADYLAYILNQEQIPFESLALDKLANAAQGSIRDSLSL 220 >gi|238795502|ref|ZP_04639017.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969] gi|238720621|gb|EEQ12422.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969] Length = 655 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 42/247 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 8 RKWRPQTFADVVGQEHVLTALANSLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--- 120 + P C + L + G++ +I +D R + Sbjct: 68 ITATPCGTC-----------------------ANCLEIEQGRFVDLIEIDAASRTKVEDT 104 Query: 121 -----FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + Sbjct: 105 RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPV 164 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TI SRCL + + LE++ +++ S ARA+++L D Sbjct: 165 TILSRCLQFHLKVIDVEVIRALLEKI-----------LQLEHISSDARALQLLARAADGS 213 Query: 236 ISSYIDL 242 + + L Sbjct: 214 MRDALSL 220 >gi|325578015|ref|ZP_08148209.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae ATCC 33392] gi|325160248|gb|EGC72376.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae ATCC 33392] Length = 714 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 19/193 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFSEVVGQSHVLTALENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 V DPC K + + D + + + K V++ R + Sbjct: 63 ------NCVNGITADPCGECENCKAIEAGNFIDLIEIDAASRTK---------VEDTREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI Sbjct: 108 LDNVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSE 191 SRC+ L E Sbjct: 168 SRCMQFHLKVLDE 180 >gi|317123731|ref|YP_004097843.1| DNA polymerase III delta prime subunit [Intrasporangium calvum DSM 43043] gi|315587819|gb|ADU47116.1| DNA polymerase III, delta prime subunit [Intrasporangium calvum DSM 43043] Length = 383 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 23/190 (12%) Query: 14 LFGHEDIEKFLSQ-YYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + LS+ M HA LF G G G++T LQ P+ R C Sbjct: 7 LVGQEPTVETLSRAVRAEASMTHAWLFTGPPGSGRSTAAR-AFAAALQCPEGGCGECREC 65 Query: 73 NP--DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D VK +A+ L I V + R + +L + G Sbjct: 66 RTALDGSHADVKVVATEGLS-------------------IQVRDTRDLVQESALRPSVGR 106 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 WRVI+I+ D + AA+ALLK+LEEP + +++L + + ++ TIRSR ++ + Sbjct: 107 WRVIIIEDADRLTERAADALLKALEEPTPRTVWMLCAPSLEDVIITIRSRSRHVRLRTPP 166 Query: 191 ENNLYKALEQ 200 + + + LE+ Sbjct: 167 VHAVAELLER 176 >gi|111115291|ref|YP_709909.1| DNA polymerase III subunits gamma and tau [Borrelia afzelii PKo] gi|110890565|gb|ABH01733.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii PKo] Length = 566 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 19/173 (10%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + S + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCKNGPTVM----PCGECSNCKSIESDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVIEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ALLK++EEPP ++FI + S + TI+SRC F LS +Y L+++ Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKV 191 >gi|312149771|gb|ADQ29842.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi N40] Length = 560 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS + +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|282882939|ref|ZP_06291544.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis 315-B] gi|281297350|gb|EFA89841.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis 315-B] Length = 577 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 24/255 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ ++ G E + L + + HA LF G +G GK + +A V Sbjct: 7 RKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAVNCEHP 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C + + D + + + N VD+IR ++ + Sbjct: 67 IDGNPCNKCKS--CLSILNNTSV----DVVEMDAASNN---------GVDDIRDLKDKVI 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V +++ A NALLK LEEPP ++FIL + I +TI SR Sbjct: 112 YPPTFLKYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQK 171 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKILH----YDCDKI 235 +F+ +S N+ K L+ + M + D + + G++ A+ +L +D D I Sbjct: 172 FEFSRVSLENIIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHI 231 Query: 236 -ISSYIDLIHIPRQE 249 I +D++ I E Sbjct: 232 SIEKAMDVLGISSSE 246 >gi|308176311|ref|YP_003915717.1| putative DNA polymerase III subunit delta prime [Arthrobacter arilaitensis Re117] gi|307743774|emb|CBT74746.1| putative DNA polymerase III subunit delta prime [Arthrobacter arilaitensis Re117] Length = 384 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 114 EIRRIRYFLSL---TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +I +R+ ++ +A TG WR+I+I+ D M+ + N LLK++EEPP K+++IL + + Sbjct: 90 QIADVRHLITRAQESAGTGRWRIIIIEDADRMSERSTNVLLKAIEEPPAKMIWILCAPSP 149 Query: 171 PTILSTIRSRCLSIKFN 187 +L TIRSRC ++ + Sbjct: 150 ADVLVTIRSRCRAVNLS 166 >gi|228473203|ref|ZP_04057958.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga gingivalis ATCC 33624] gi|228275353|gb|EEK14145.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga gingivalis ATCC 33624] Length = 362 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 34/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + + ALLF G +G+GK T A + + Sbjct: 9 RKYRPQSFVDVVGQKAITDTLENAIANDHLAQALLFTGPRGVGKTTCARILAKKINE--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K + +DF + + L+ + +V+ IR + + Sbjct: 66 ------------------KTTPTDGDNDFAFNIFELDAASNN-----SVEGIRSLIEQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP +FIL + ++ TI SRC Sbjct: 103 IPPQVGKYKVYIIDEVHMLSNAAFNAFLKTLEEPPAHAIFILATTEKHKVIPTILSRCQI 162 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIIS 237 F ++ N+ + L+ + K G +++ + ++I A G++ A+ I D+++S Sbjct: 163 FDFKRITINDAREYLKYIAKEQGLEAEDEALQIIAQKADGAMRDALSIF----DRVVS 216 >gi|134096992|ref|YP_001102653.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] gi|291006263|ref|ZP_06564236.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909615|emb|CAL99727.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] Length = 403 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 21/174 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA LF G G G++ +A + C Q +HA Sbjct: 43 AGAMTHAWLFTGPPGSGRSVAARSFAAALQCTSGEGCGHCSACR-------TVQAGTHA- 94 Query: 90 HDF-LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + L+ I+V E+R + + TG WRV++I+ D + A+N Sbjct: 95 -DVRVVVPEGLS---------ISVSEMRSLVQASARRPTTGQWRVVLIEDSDRLTEGASN 144 Query: 149 ALLKSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQ 200 ALLK++EEPP + +F+L + + P +S TIRSRC ++ + + + + L + Sbjct: 145 ALLKAVEEPPDRTVFLLCAPSDHPEDVSVTIRSRCRVVQLKTPRPDAIAEVLAE 198 >gi|163752562|ref|ZP_02159746.1| DNA polymerase III, delta prime subunit [Shewanella benthica KT99] gi|161327558|gb|EDP98758.1| DNA polymerase III, delta prime subunit [Shewanella benthica KT99] Length = 304 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 14/166 (8%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 SQ +G + HA L +G G L A L + C V Q+ Sbjct: 15 SQKIKAGLLGHAYLVGVHKGYGGEELTLEIAKAALCKSPGEQGACGCCK-------VCQL 67 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 H LYL + + I VD+IR + L++T+ G RV +I + +N+ Sbjct: 68 LDGNTHPDLYLVSADGNQ-------IKVDQIRELCQKLTMTSLQGGRRVAVIYHSEQLNQ 120 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +ANALLK+LEEP + L +L S +++TI+SRC + F S S Sbjct: 121 ASANALLKTLEEPGKDTLLLLQSDTPSRLMATIKSRCQQVHFESPS 166 >gi|15604695|ref|NP_221213.1| DNA polymerase III subunits gamma and tau [Rickettsia prowazekii str. Madrid E] gi|3861390|emb|CAA15289.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU (dnaX) [Rickettsia prowazekii] gi|292572530|gb|ADE30445.1| DNA polymerase III gamma and tau chains [Rickettsia prowazekii Rp22] Length = 541 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 13/197 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + K LS + R+ L G +GIGK T A V + Sbjct: 48 RKYRPSNFTELQGQEVLVKILSYTILNDRLVGGYLLTGIRGIGKTTSARIIAKAVNCSAL 107 Query: 64 FSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 ++ ++ C + C+ V +H D + + + KT ++D+IRRI Sbjct: 108 ITENTAIKTC--EKCTNCV-SFNNHNHPDIIEIDAA--SKT-------SIDDIRRIIESA 155 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G ++ +ID V +++ A NALLK+LEEPP V+FI + + STI SRC Sbjct: 156 EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTIISRCQ 215 Query: 183 SIKFNSLSENNLYKALE 199 LS ++K L+ Sbjct: 216 RYDLRRLSFEEIFKLLQ 232 >gi|169834932|ref|YP_001715785.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum A3 str. Loch Maree] gi|169409039|gb|ACA57449.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum A3 str. Loch Maree] Length = 471 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 30/231 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-- 63 + P + + + G + K L SG + HA LF G +G GK T +A V Q+ + Sbjct: 6 YRPRFFKDVVGQGENTKILLNQVRSGYIGHAYLFCGNRGSGKTTTARIFAKAVNQHDNGE 65 Query: 64 -FSKAPVRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + R + C V+ ASH +++IR I Sbjct: 66 PLNNELSRKIDAGNCIDIVELDAASHN----------------------GIEDIRNIIEQ 103 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +RV +ID V ++ +A NA LK LEEPP+ V+FIL + + T+ SRC Sbjct: 104 AQYAPSECKYRVFIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRC 163 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + +++ L E KI + + I A G++ AI IL Sbjct: 164 QRFDFKRIDVTDIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISIL 214 >gi|317133105|ref|YP_004092419.1| DNA polymerase III, gamma/tau subunits [Ethanoligenens harbinense YUAN-3] gi|315471084|gb|ADU27688.1| DNA polymerase III, gamma/tau subunits [Ethanoligenens harbinense YUAN-3] Length = 330 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 17/162 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 SG + HALL +G G GK T A + + K PC + + AL Sbjct: 22 SGHVPHALLIDGPAGAGKRTFARILAQAAVCGGEGEK---------PCGVCRQCRNALAL 72 Query: 90 H--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H D + + P++ ++ +R++R ++ N +V ++ V M+ A Sbjct: 73 HHPDIIEVEGGKGPRS------FPIEAVRQVRASAAVGPNDASRKVYILIHVQNMSEQAQ 126 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 NALLK +EEPP LF+L + +L T+RSRC+ + + Sbjct: 127 NALLKLIEEPPPYALFLLTCDSRFRVLPTVRSRCMELSLGPV 168 >gi|269796532|ref|YP_003315987.1| DNA polymerase III subunit gamma/tau [Sanguibacter keddieii DSM 10542] gi|269098717|gb|ACZ23153.1| DNA polymerase III, gamma/tau subunit [Sanguibacter keddieii DSM 10542] Length = 378 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA L G G G++ N + A C C HA Sbjct: 27 MTHAWLLTGPPGSGRS------------NAARAFAAALQCEQGGCG------HCHACTTT 68 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L +++ + I +DE+R + S + + G WRVI+++ D M N LLK Sbjct: 69 LSGTHADLTVVATEKVTIAIDEVRSLISLASRSPSQGRWRVILVEDADRMAERTTNVLLK 128 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++EEPP + +++L + + ++ TIRSRC + Sbjct: 129 AIEEPPPRTVWLLCAPSPQDVMVTIRSRCRGVTL 162 >gi|315497912|ref|YP_004086716.1| DNA polymerase iii, subunits gamma and tau [Asticcacaulis excentricus CB 48] gi|315415924|gb|ADU12565.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis excentricus CB 48] Length = 603 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 17/233 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + LS + +GR+ HA + G +G+GK T A + Sbjct: 43 VLARKYRPRTFEDLIGQEAMVRTLSNAFATGRIAHAFMLTGVRGVGKTTTARLLARALNY 102 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D K P + + Q H D L L + +TG VD +R + Sbjct: 103 ESDTMKGPSVDLS---TFGYHCQAIIEGRHIDVLELDAA--SRTG-------VDSMRELL 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V +ID V ++ A NALLK+LEEPP FI + + TI S Sbjct: 151 ESVRYAPVEARYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILS 210 Query: 180 RCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKIL 228 RC + L LE++ ++ G + D + + AA GSV ++ +L Sbjct: 211 RCQRFDLRRVEPETLTPHLEKICRLEGAQIEPDALALIARAAEGSVRDSLSLL 263 >gi|325962186|ref|YP_004240092.1| DNA polymerase III delta' subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323468273|gb|ADX71958.1| DNA polymerase III, delta' subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 380 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + L Q + HA LF G G G++ +A + N D +R C Sbjct: 7 LQGQPAVVEQLRQASSGEGLTHAWLFTGPPGSGRSNAAKAFAAAL--NCDQDDVSLRGCG 64 Query: 74 PDPCSPFVKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C+ + + +H+ F+ + IT+DE R + ++G WR Sbjct: 65 S--CAACLTILGETHSDVTFVRTE----------KVTITIDEARELVATAGNRPSSGRWR 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +I+++ D M N LLK++EEP + +++L + + +L TIRSRC S+ Sbjct: 113 IIVVEDADRMAERTTNVLLKAIEEPTPRTVWMLCAPSPADVLVTIRSRCRSVAL 166 >gi|302530936|ref|ZP_07283278.1| DNA polymerase III gamma and tau [Streptomyces sp. AA4] gi|302439831|gb|EFL11647.1| DNA polymerase III gamma and tau [Streptomyces sp. AA4] Length = 687 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVVGQEHVTEPLRTALAAGRINHAYLFSGPRGCGK-TSSARIMARSL---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P PDPC + +A G VD+ R +R Sbjct: 63 CAQGP----TPDPCGECNSCRALAPEGPGSVDVTELDAASHGG-------VDDARELRDK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ ++FI + +L+TIRSR Sbjct: 112 AFYAPAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ 200 F + +++ + LE+ Sbjct: 172 HHYPFRLIPPSSMRELLER 190 >gi|171058659|ref|YP_001791008.1| DNA polymerase III subunits gamma and tau [Leptothrix cholodnii SP-6] gi|170776104|gb|ACB34243.1| DNA polymerase III, subunits gamma and tau [Leptothrix cholodnii SP-6] Length = 650 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P L G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRSFAELVGQAHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 60 QNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 D + P +C+ + + + D++ L + N VDEI Sbjct: 65 VGADGLGGITATPCGVCS------ACRDIDAGRHVDYVELDAASN---------RGVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V ++ A NA+LK+LEEPP+ + F+L + + Sbjct: 110 SQLLDQAVYKPVVGRFKVYMIDEVHMLSTTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRCL ++ +++ L+ + Sbjct: 170 TVLSRCLQFNLRPMATETVFEHLQTV 195 >gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3 str. Loch Maree] gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3 str. Loch Maree] Length = 541 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 42/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +IS+ +D++ + E L+ I ++ + + +I D ++ Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|216263439|ref|ZP_03435434.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1] gi|215980283|gb|EEC21104.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1] Length = 566 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + S + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCKNGPTVM----PCGECSNCKSIESDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVIEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCFEDHIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+++S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQVVSFTNSDIKLDQIR------SKMGFTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILSEDVKELIC 267 >gi|94266430|ref|ZP_01290125.1| DNA polymerase III delta subunit-like protein [delta proteobacterium MLMS-1] gi|93452972|gb|EAT03471.1| DNA polymerase III delta subunit-like protein [delta proteobacterium MLMS-1] Length = 294 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 P ++ A+ + D L +S I + ++R ++ L G +RV+++ Sbjct: 27 PACRKFAAGSHPDLLTVSPE--------GAAIKIGQVRELKKALRFPPLEGSYRVVLVKE 78 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 V M R AAN+LLK LEEPP + IL + IL TI SRC I F +LS + L Sbjct: 79 VQTMRREAANSLLKILEEPPPATILILTGDEAGAILPTILSRCQVIPFYALSTATVATML 138 >gi|108804783|ref|YP_644720.1| DNA polymerase III subunit delta' [Rubrobacter xylanophilus DSM 9941] gi|108766026|gb|ABG04908.1| DNA polymerase III, delta prime subunit [Rubrobacter xylanophilus DSM 9941] Length = 359 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 38/202 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+ + L + SG + HA LF G +G+GK T+ R+ ++ D + Sbjct: 10 IVGNRAALRLLERALRSGEVSHAYLFHGPEGVGKRTVARRFGAALVAGGDEA-------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI---RYFLSLTANTGY 130 A LH L + P+ G + T+ V E+ R+ R F G Sbjct: 62 -------ALGRALRGLHPDL---TEVEPE-GAFTTIGQVREVLRLAASRPF------EGS 104 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 RV ++ D +N AANALLK+LEEP + +F+L++ + +L TI SR +++F+ + Sbjct: 105 RRVFVLR-ADTLNLQAANALLKTLEEPEGEAVFLLLAASREAVLPTIASRAQAVRFDPVP 163 Query: 191 ENNLYKALEQLKIMGWDSKRDF 212 ++ G+ ++R F Sbjct: 164 VG---------EVAGFLARRGF 176 >gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum NCTC 2916] gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2 str. Kyoto] gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum NCTC 2916] gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2 str. Kyoto] gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum H04402 065] Length = 541 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 42/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +IS+ +D++ + E L+ I ++ + + +I D ++ Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|126437744|ref|YP_001073435.1| DNA polymerase III subunit delta' [Mycobacterium sp. JLS] gi|126237544|gb|ABO00945.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. JLS] Length = 402 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 18/201 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A LQ + V C C MA Sbjct: 36 TGTMTHAWLITGPPGSGRSIAALCFAA-ALQ---CTSEGVPGCGD--CRACTTTMAGTHA 89 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VDE+R I S TG W++++++ D + AANA Sbjct: 90 DVRRIIPEGLS---------IGVDEMRSIVQIASRRPGTGRWQIVVVEDADRLTEGAANA 140 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + I T+RSRC + + S + + + L + M Sbjct: 141 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVALVTPSVDAITQVLIEGDGMSEQ 200 Query: 208 SKRDFVKIAAYGSVARAIKIL 228 R ++ G V RA +++ Sbjct: 201 EARWAASVSG-GHVGRARRLV 220 >gi|88798791|ref|ZP_01114374.1| DNA polymerase III subunit delta [Reinekea sp. MED297] gi|88778554|gb|EAR09746.1| DNA polymerase III subunit delta [Reinekea sp. MED297] Length = 320 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 LSQ + GR+ H LL G G G A +L D + P C C Sbjct: 15 LSQQFIEGRLPHGLLLVGHPGNGANLFSTNLAQRLL-CLDKANQPCGRCKS--CL----- 66 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 + + H L + + P+ GK +T I V+ IR + + TA G +V+ + + MN Sbjct: 67 LIASGHHPDLKV---VEPE-GKSQT-IKVEAIREVIRRATETAQQGGNKVVWLKSAETMN 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NAANALLK LEEPP+ ++ + +L T+RSRC Sbjct: 122 VNAANALLKVLEEPPENTFLLVQAAQMARLLPTVRSRC 159 >gi|320104515|ref|YP_004180106.1| DNA polymerase III subunits gamma and tau [Isosphaera pallida ATCC 43644] gi|319751797|gb|ADV63557.1| DNA polymerase III, subunits gamma and tau [Isosphaera pallida ATCC 43644] Length = 662 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/274 (22%), Positives = 126/274 (45%), Gaps = 32/274 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS R+ HA LF G +G+GK ++ +A + Sbjct: 23 VVARRYRPQSFADVVGQDHVVRALSNAIIHHRVTHAYLFCGTRGVGKTSMARIFAKCLNC 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P ++C+ + ++ D + + + N VD +R +R Sbjct: 83 ERGPTVEPCQVCD------ICRAISVGQDVDVIEIDGASN---------NGVDAVRELRQ 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L + +++ ID V + A NALLK+LEEPP+ V FI + + I T+ SR Sbjct: 128 NAGLRPSRARYKIYYIDEVHMLTTGAFNALLKTLEEPPEHVKFIFATTEAHKIPITVLSR 187 Query: 181 CLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILHYDCDKII 236 C F S++ + + ++L + + G ++ + +++ A GS+ A +L ++++ Sbjct: 188 CQRYDFASITPDTIQQSLAAICQREGIAAESEALRVVARRASGSMRDAQSLL----EQLL 243 Query: 237 SS-----YIDLIH----IPRQEYALQKMQQIADE 261 SS ++++H P E L+ + +A + Sbjct: 244 SSGQSPLTVEMVHQLLGTPDDELTLEILDALAGQ 277 >gi|303232522|ref|ZP_07319208.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] gi|302481309|gb|EFL44383.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] Length = 679 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 20/198 (10%) Query: 9 VYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 Y R F G + + L+ ++ HA LF G +G GK T+ A + Sbjct: 7 TYRPRTFTEVVGQQHVVATLTHAVTHNKIAHAYLFCGPRGTGKTTMARLLAKALTCTHTT 66 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLS 123 + P C D C Q+A D L L + +TG VD +R I +S Sbjct: 67 NHLPCGAC--DAC----LQIARAQHPDVLELDAA--SRTG-------VDNVREEILNRVS 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V + A NALLK++EEPP V+FI+ + I TI SR Sbjct: 112 YAPVVAPYKIFIIDEVHMLTTAAFNALLKTIEEPPAHVIFIMCTTEPQKIPETILSRVQR 171 Query: 184 IKFNSLSENNLYKALEQL 201 F+S++ N++++ L+ + Sbjct: 172 FDFHSVAANDMFEHLKHV 189 >gi|116049476|ref|YP_791721.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa UCBPP-PA14] gi|115584697|gb|ABJ10712.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa UCBPP-PA14] Length = 701 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGECS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|162420936|ref|YP_001607822.1| DNA polymerase III subunit delta' [Yersinia pestis Angola] gi|162353751|gb|ABX87699.1| DNA polymerase III, delta' subunit [Yersinia pestis Angola] Length = 335 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|257062978|ref|YP_003142650.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens DSM 20476] gi|256790631|gb|ACV21301.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens DSM 20476] Length = 807 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 114/286 (39%), Gaps = 31/286 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +E+ L + HA LF G +G GK T+ A +L Sbjct: 7 RKYRPQTFDDVVGQTHVERTLKNALQQDHVSHAYLFCGPRGTGKTTMARLLAKALLCEHG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 + +P C + C Q+ + H +N RT VD +R I + Sbjct: 67 PTPSPDGTC--EEC-----QLIAEGAHP------DVNELDAASRT--GVDNVREEIIGRV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 G +++ +ID V + A NALLK+LEEPP V+F++ + I TI SRC Sbjct: 112 QFAPTRGRYKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQ 171 Query: 183 SIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 F+ LS + L E + G D + A G + A+ L + Sbjct: 172 RFDFHRLSNEEIVSRLGAVCMAEDVPFEG--EALDLIARRAQGGMRDALTALEQLIAFGA 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + +D+ + + M +IA + +D F ++ E++ Sbjct: 230 GNVT---MDVANAALGSLDVNDMSEIAGHIGRRDAAACFTWMAEYV 272 >gi|108807914|ref|YP_651830.1| DNA polymerase III subunit delta' [Yersinia pestis Antiqua] gi|108812185|ref|YP_647952.1| DNA polymerase III subunit delta' [Yersinia pestis Nepal516] gi|145599123|ref|YP_001163199.1| DNA polymerase III subunit delta' [Yersinia pestis Pestoides F] gi|149366522|ref|ZP_01888556.1| DNA polymerase III, delta' subunit [Yersinia pestis CA88-4125] gi|165925474|ref|ZP_02221306.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165940171|ref|ZP_02228703.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008065|ref|ZP_02228963.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211057|ref|ZP_02237092.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401722|ref|ZP_02307213.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421892|ref|ZP_02313645.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427073|ref|ZP_02318826.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023933|ref|YP_001720438.1| DNA polymerase III subunit delta' [Yersinia pseudotuberculosis YPIII] gi|218928742|ref|YP_002346617.1| DNA polymerase III subunit delta' [Yersinia pestis CO92] gi|229841591|ref|ZP_04461749.1| DNA polymerase III, delta prime subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843707|ref|ZP_04463850.1| DNA polymerase III, delta prime subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229894451|ref|ZP_04509633.1| DNA polymerase III, delta prime subunit [Yersinia pestis Pestoides A] gi|229902509|ref|ZP_04517628.1| DNA polymerase III, delta prime subunit [Yersinia pestis Nepal516] gi|270490313|ref|ZP_06207387.1| DNA polymerase III, delta' subunit [Yersinia pestis KIM D27] gi|294504193|ref|YP_003568255.1| DNA polymerase III subunit delta [Yersinia pestis Z176003] gi|17380376|sp|O69170|HOLB_YERPE RecName: Full=DNA polymerase III subunit delta' gi|108775833|gb|ABG18352.1| DNA polymerase III, delta prime subunit [Yersinia pestis Nepal516] gi|108779827|gb|ABG13885.1| DNA polymerase III, delta prime subunit [Yersinia pestis Antiqua] gi|115347353|emb|CAL20251.1| DNA polymerase III, delta' subunit [Yersinia pestis CO92] gi|145210819|gb|ABP40226.1| DNA polymerase III, delta prime subunit [Yersinia pestis Pestoides F] gi|149290896|gb|EDM40971.1| DNA polymerase III, delta' subunit [Yersinia pestis CA88-4125] gi|165911917|gb|EDR30562.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922583|gb|EDR39734.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992447|gb|EDR44748.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166208237|gb|EDR52717.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960377|gb|EDR56398.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048827|gb|EDR60235.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053917|gb|EDR63749.1| DNA polymerase III, delta' subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750467|gb|ACA67985.1| DNA polymerase III, delta prime subunit [Yersinia pseudotuberculosis YPIII] gi|229680555|gb|EEO76652.1| DNA polymerase III, delta prime subunit [Yersinia pestis Nepal516] gi|229689315|gb|EEO81378.1| DNA polymerase III, delta prime subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694054|gb|EEO84102.1| DNA polymerase III, delta prime subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703470|gb|EEO90487.1| DNA polymerase III, delta prime subunit [Yersinia pestis Pestoides A] gi|262362310|gb|ACY59031.1| DNA polymerase III subunit delta [Yersinia pestis D106004] gi|262366244|gb|ACY62801.1| DNA polymerase III subunit delta [Yersinia pestis D182038] gi|270338817|gb|EFA49594.1| DNA polymerase III, delta' subunit [Yersinia pestis KIM D27] gi|294354652|gb|ADE64993.1| DNA polymerase III subunit delta [Yersinia pestis Z176003] gi|320014747|gb|ADV98318.1| DNA polymerase III, delta prime subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 340 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|189219682|ref|YP_001940323.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum V4] gi|189186540|gb|ACD83725.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum V4] Length = 618 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E + + L GR+ HA LF G +G GK TL R L Sbjct: 18 VFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLA-RILAKSLN 76 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D A DP P + + D + + + N G VD++R +R Sbjct: 77 CADGPNADF-----DPDDPICLDIDAGRSLDCIEIDGASN--NG-------VDQVRELRE 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V + + A NALLK LEEPP V FI + I T+ SR Sbjct: 123 AAKSLPVQSRYKIYIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSR 182 Query: 181 CLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 C F + + L+++ I D++R +++ A S A++ D++IS Y Sbjct: 183 CQRFHFKRIPRRLIADHLQKICIQEKIDAERKALEMIADISEG-ALRDAEVALDQLISFY 241 Query: 240 IDLI 243 + I Sbjct: 242 GEKI 245 >gi|148378038|ref|YP_001252579.1| DNA polymerase III, gamma and tau subunits [Clostridium botulinum A str. ATCC 3502] gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A str. ATCC 19397] gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A str. Hall] gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str. ATCC 3502] gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A str. ATCC 19397] gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A str. Hall] Length = 541 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 42/290 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +IS+ +D++ + E L+ I ++ + + +I D ++ Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|146282183|ref|YP_001172336.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri A1501] gi|145570388|gb|ABP79494.1| DNA polymerase subunits gamma and tau [Pseudomonas stutzeri A1501] Length = 687 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 20 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 79 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 80 ETGVSSTPCGQCS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 125 NVQYAPSRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 184 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 185 CLQFSLKNMPPERVVEHL 202 >gi|51596787|ref|YP_070978.1| DNA polymerase III subunit delta' [Yersinia pseudotuberculosis IP 32953] gi|186895858|ref|YP_001872970.1| DNA polymerase III subunit delta' [Yersinia pseudotuberculosis PB1/+] gi|51590069|emb|CAH21703.1| DNA polymerase III, delta' subunit [Yersinia pseudotuberculosis IP 32953] gi|186698884|gb|ACC89513.1| DNA polymerase III, delta prime subunit [Yersinia pseudotuberculosis PB1/+] Length = 340 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|148378064|ref|YP_001252605.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A str. ATCC 3502] gi|153933729|ref|YP_001382463.1| DNA polymerase III subunit delta' [Clostridium botulinum A str. ATCC 19397] gi|153935866|ref|YP_001386015.1| DNA polymerase III subunit delta' [Clostridium botulinum A str. Hall] gi|170756340|ref|YP_001779684.1| DNA polymerase III subunit delta' [Clostridium botulinum B1 str. Okra] gi|226947282|ref|YP_002802373.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A2 str. Kyoto] gi|148287548|emb|CAL81612.1| DNA polymerase III, delta' subunit [Clostridium botulinum A str. ATCC 3502] gi|152929773|gb|ABS35273.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A str. ATCC 19397] gi|152931780|gb|ABS37279.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A str. Hall] gi|169121552|gb|ACA45388.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum B1 str. Okra] gi|226840749|gb|ACO83415.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A2 str. Kyoto] gi|322804329|emb|CBZ01879.1| DNA polymerase III delta prime subunit [Clostridium botulinum H04402 065] Length = 314 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G +V Sbjct: 55 ---------QQRSYA--DLIEFK-PINKKS------IGIDDIRNLIEEINKKPIEGNKKV 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEVAQNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRL 152 >gi|94497479|ref|ZP_01304049.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58] gi|94423110|gb|EAT08141.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58] Length = 538 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L GR+ HA L G +G+GK + R L Sbjct: 10 VLARKYRPRSFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTA-RLIAKALN 68 Query: 61 --NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P DPC K +A D + + + + TG VD++R Sbjct: 69 CVGPDGQGGPTI----DPCGQCEPCKAIAEGRHIDVVEMDAASH--TG-------VDDVR 115 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + A + +++ +ID V +++NA NALLK+LEEPP V F+ + + T Sbjct: 116 EIIEAVRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVT 175 Query: 177 IRSRC 181 + SRC Sbjct: 176 VLSRC 180 >gi|153939243|ref|YP_001389421.1| DNA polymerase III subunit delta' [Clostridium botulinum F str. Langeland] gi|152935139|gb|ABS40637.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum F str. Langeland] gi|295317531|gb|ADF97908.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum F str. 230613] Length = 314 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G +V Sbjct: 55 ---------QQRSYA--DLIEFK-PINKKS------IGIDDIRNLIEEINKKPIEGNKKV 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEVAQNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRL 152 >gi|153947256|ref|YP_001400561.1| DNA polymerase III subunit delta' [Yersinia pseudotuberculosis IP 31758] gi|152958751|gb|ABS46212.1| DNA polymerase III, delta' subunit [Yersinia pseudotuberculosis IP 31758] Length = 340 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|332043573|gb|EGI79768.1| DNA polymerase III, subunits gamma and tau [Lacinutrix algicola 5H-3-7-4] Length = 362 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 41/241 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I L + + ALLF G +G+GK + Sbjct: 9 RKYRPQTFKDVVGQSAITNTLLNAIDNNHLAQALLFTGPRGVGKTSC------------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ +M N D DF + + L+ + +VD+IR + + Sbjct: 56 -ARILAKMINSDGTES--------NEEDFAFNIFELDAASNN-----SVDDIRSLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPKHCIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAAY---GSVARAIKILHYDCDKII 236 F ++ + A E LK + G +++ D + I A G++ A+ I D+++ Sbjct: 162 FDFKRIT---VKDAKEYLKYIAQEQGINAEDDALHIIAQKADGAMRDALSIF----DRVV 214 Query: 237 S 237 S Sbjct: 215 S 215 >gi|299536745|ref|ZP_07050055.1| DNA polymerase III subunit delta' [Lysinibacillus fusiformis ZC1] gi|298727859|gb|EFI68424.1| DNA polymerase III subunit delta' [Lysinibacillus fusiformis ZC1] Length = 334 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 14/184 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L + R+ HA +F+GE+G GKA + + +L P C Sbjct: 15 VMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEQPNGNVPCETCRN----- 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 K++ S H ++ Y G++ I +D++R + + + ++ ++ Sbjct: 70 -CKRVDS-GNHPNIHQIYP----DGQF---IKIDQMRELIGEMKMVGVEEGRKIYVLHHA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D +N +AN +LK LEEP +V IL++ +IL TIRSRC IKF + + L K L+ Sbjct: 121 DRLNTASANMILKFLEEPEGEVTAILLTEQMQSILPTIRSRCQHIKFQKMPRHVLLKHLQ 180 Query: 200 QLKI 203 + I Sbjct: 181 ENNI 184 >gi|225010717|ref|ZP_03701186.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium MS024-3C] gi|225005088|gb|EEG43041.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium MS024-3C] Length = 610 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + + G I L + + + ALLF G +G+GK + A + + Sbjct: 9 RKYRPLNFEDVVGQSAITNTLEKSIDNNHLAQALLFCGPRGVGKTSCARILAKKINE--- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K++ + D+ + + L+ + +VD+IR + + Sbjct: 66 ------------------KELGTSTEEDYAFNIFELDAASNN-----SVDDIRNLVDQVR 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 103 IPPQKGAYKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRC 160 >gi|299140394|ref|ZP_07033553.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX8] gi|298597621|gb|EFI53800.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX8] Length = 819 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+ H +F G +GIGK T+ R L Sbjct: 99 VLARKYRPQRFSDVVGQDHVTRTLLNALAQSRIAHGYIFSGHRGIGKTTIA-RILASALN 157 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P R P+PC + L + L +++ T +DEIR +R Sbjct: 158 CRTAIGSPER-PTPEPC-----ETCESCLE--IRLGNAVDVIEIDAATNRGIDEIRELRD 209 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ++D + A NALLK+LEEPP ++F++ + I TIRSR Sbjct: 210 AARYRPSRDKYKIYILDEAHQITDAAFNALLKTLEEPPDHIVFMMATTQPEDIPQTIRSR 269 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F+++ +++ L + I+ ++ + A GS+ A+ I+ D+ I Sbjct: 270 CQHFSFHAVKLDDIVGQLTAISKHENIVVDEATLSLLAEAGDGSMRDALSIM----DQAI 325 Query: 237 SS 238 +S Sbjct: 326 AS 327 >gi|219684238|ref|ZP_03539182.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr] gi|219672227|gb|EED29280.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr] Length = 560 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 35/260 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 ++ +A +F G +G+GK + +A + + P CN K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCLNCKNGPTVMPCGECNN------CKSIDNDSSL 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + N +V +IR+I+ + +R+ +ID V ++ +A NAL Sbjct: 90 DVIEIDGASNT---------SVQDIRQIKEEIMFPPAVSKYRIYIIDEVHMLSNSAFNAL 140 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGW 206 LK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 141 LKTIEEPPHYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCFEDHIKYE 200 Query: 207 DSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADELL 263 D ++ + GSV A + D+++S S I L I KM DE L Sbjct: 201 DEALKWIAYKSSGSVRDAYTLF----DQVVSFTNSDIKLDQIR------SKMGLTNDEFL 250 Query: 264 SQDQKIAFDFLIEFILKEIC 283 +K++ L E + + IC Sbjct: 251 ---EKLSVSILSEDVKELIC 267 >gi|149189267|ref|ZP_01867553.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1] gi|148836826|gb|EDL53777.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1] Length = 727 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 8 RKWRPRKFSEVVGQTHVLTALENALDQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C CS ++ ++ D L + + K V++ R + + Sbjct: 68 ITSTP---CGT--CSTCIEIDEGRSV-DLLEIDAASRTK---------VEDTRELLDNVQ 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 113 YKPARNRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPMTILSRCLQ 172 Query: 184 IKFNSLSENNLYKALEQL 201 ++ N+ + L+ + Sbjct: 173 FHLKPITVENIQQQLDHI 190 >gi|300857562|ref|YP_003782545.1| DNA polymerase III subunit gamma and tau [Corynebacterium pseudotuberculosis FRC41] gi|300685016|gb|ADK27938.1| DNA polymerase III gamma and tau subunit [Corynebacterium pseudotuberculosis FRC41] gi|302205302|gb|ADL09644.1| DNA polymerase III subunits gamma and tau [Corynebacterium pseudotuberculosis C231] gi|302329856|gb|ADL20050.1| DNA polymerase III subunits gamma and tau [Corynebacterium pseudotuberculosis 1002] gi|308275542|gb|ADO25441.1| DNA polymerase III subunits gamma and tau [Corynebacterium pseudotuberculosis I19] Length = 849 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 19/199 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS SGR++HA LF G +G GK T R L + Sbjct: 5 RKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGK-TSSARIMARSLNCVE 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P CN C + D L + N +VD++R +R Sbjct: 64 GP--TSTPCGKCNS--CISLAPNGPGNL--DVTELDAASN---------NSVDDMRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ +ID + ANALLK +EEPP+ ++FI + ++ TIRSR Sbjct: 109 RAMYAPAESRYRIFIIDEAHMVTTQGANALLKIVEEPPEHLIFIFATTEPEKVIGTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALE 199 F L+ ++ LE Sbjct: 169 THHYPFRLLTPQSMRGLLE 187 >gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F str. Langeland] gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F str. Langeland] gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F str. 230613] Length = 541 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 46/294 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L R+ HA LF G +G GK + +L Sbjct: 8 REWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ ++ S L D + + + K + VI + Sbjct: 59 -SKA-VNCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVI-----ENV 111 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +Y G +V ++D V + + A NA LK+LEEPP V+FIL + + TI Sbjct: 112 KY----PPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L + I D + + + G++ A+ IL D+ Sbjct: 168 SRCQRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSIL----DQ 223 Query: 235 IISS---------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +IS+ +D++ + E L +I D ++ +D + + + + +L Sbjct: 224 VISTGDGKVEYDQVLDMLGLVTNENLL----RITDSIIEKDVEKSMRIIEDIVL 273 >gi|86148587|ref|ZP_01066871.1| DNA polymerase III subunit delta [Vibrio sp. MED222] gi|85833616|gb|EAQ51790.1| DNA polymerase III subunit delta [Vibrio sp. MED222] Length = 321 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 46/72 (63%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVD++R + ++ G RVI++ P + MN +A+NALLK+LEEP +FIL + Sbjct: 88 ITVDQVRASNRWAQQSSQLGGLRVILLSPAEAMNESASNALLKTLEEPASNCIFILSTRN 147 Query: 170 SPTILSTIRSRC 181 S ++ TI SRC Sbjct: 148 SNRLMPTILSRC 159 >gi|222111178|ref|YP_002553442.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] gi|221730622|gb|ACM33442.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] Length = 332 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP V F+L + A Sbjct: 108 IRVEAMRDAVEFAQRTSGRGRGKAVLVYPAEQMNHVTANALLKTLEEPPGDVRFVLATEA 167 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 168 AHELLPTIRSRCLG 181 >gi|224532078|ref|ZP_03672710.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana VS116] gi|224511543|gb|EEF81949.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana VS116] Length = 560 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 35/260 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 ++ +A +F G +G+GK + +A + + P CN K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCLNCKNGPTVMPCGECNN------CKSIENDSSL 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + N +V +IR+I+ + +R+ +ID V ++ +A NAL Sbjct: 90 DVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFNAL 140 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGW 206 LK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 141 LKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCFEDHIKYE 200 Query: 207 DSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADELL 263 D ++ + GSV A + D+++S S I L I KM DE L Sbjct: 201 DEALKWIAYKSSGSVRDAYTLF----DQVVSFTNSDIKLDQIR------SKMGLTNDEFL 250 Query: 264 SQDQKIAFDFLIEFILKEIC 283 +K++ L E + + IC Sbjct: 251 ---EKLSISILSEDVKELIC 267 >gi|116622271|ref|YP_824427.1| DNA polymerase III subunits gamma and tau [Candidatus Solibacter usitatus Ellin6076] gi|116225433|gb|ABJ84142.1| DNA polymerase III, subunits gamma and tau [Candidatus Solibacter usitatus Ellin6076] Length = 568 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 19/191 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HV 58 +I R + P + E ++ L R+ H +F G++G GK T+ A + Sbjct: 4 VIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNC 63 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +Q P + P +C K+++ D + + + N ++E+R + Sbjct: 64 VQGP--TATPCGVCAS------CKEISEGGTVDVIEIDAASNRG---------INEMREL 106 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + +++ +ID + A NALLK++EEPP+ +F+L + S I +TI Sbjct: 107 RENVRYQPARDRYKIFIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIA 166 Query: 179 SRCLSIKFNSL 189 SRC F S+ Sbjct: 167 SRCQHFSFRSV 177 >gi|210134919|ref|YP_002301358.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori P12] gi|210132887|gb|ACJ07878.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori P12] Length = 576 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 SVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|317014129|gb|ADU81565.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Gambia94/24] Length = 579 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCETGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|291533517|emb|CBL06630.1| hypothetical protein MHY_18960 [Megamonas hypermegale ART12/1] Length = 147 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NPDFSKAPVR 70 Q ++GHE I+ L ++ HALLF G GIGK A +L N Sbjct: 5 QNIYGHEQIKADLQLLLQENKLPHALLFSGIDGIGKLLTAKMLAKSLLCCNLQQGNMACG 64 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 CN C F +Q +H DF YL GK R +I +++IR+I+ ++L+ Sbjct: 65 YCNS--CKMFDEQ--NHP--DFYYLE-----PEGKTRKLIKIEQIRQIQAKIALSPYLSD 113 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 +V++I+ +N A N+LLK+LEEP +V Sbjct: 114 KQVVIINDAQYLNDTAGNSLLKTLEEPIGEVFL 146 >gi|219685248|ref|ZP_03540068.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04] gi|219673344|gb|EED30363.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04] Length = 560 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 35/260 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 ++ +A +F G +G+GK + +A + + P CN K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCLNCKNGPTVMPCGECNN------CKSIDNDSSL 89 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + + N +V +IR+I+ + +R+ +ID V ++ +A NAL Sbjct: 90 DVIEIDGASNT---------SVQDIRQIKEEIMFPPAVSKYRIYIIDEVHMLSNSAFNAL 140 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGW 206 LK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 141 LKTIEEPPHYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCFEDHIKYE 200 Query: 207 DSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADELL 263 D ++ + GSV A + D+++S S I L I KM DE L Sbjct: 201 DEALKWIAYKSSGSVRDAYTLF----DQVVSFTNSDIKLDQIR------SKMGLTNDEFL 250 Query: 264 SQDQKIAFDFLIEFILKEIC 283 +K++ L E + + IC Sbjct: 251 ---EKLSVSILSEDVKELIC 267 >gi|15596729|ref|NP_250223.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PAO1] gi|9947490|gb|AAG04921.1|AE004581_8 DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa PAO1] Length = 681 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGECS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] Length = 581 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + S D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITSGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|187478260|ref|YP_786284.1| DNA polymerase III subunit delta' [Bordetella avium 197N] gi|115422846|emb|CAJ49374.1| DNA polymerase III, delta' subunit [Bordetella avium 197N] Length = 347 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 51/94 (54%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D++R + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 113 IRIDQVRALESWFNTATHRGGWRVALVYPAHALNAVSANALLKVLEEPPAHTVFLLVADA 172 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +L T+ SRC + + LE+ + Sbjct: 173 PDRLLPTLLSRCRRLPLAMPDAQTARRWLEEQGV 206 >gi|298529205|ref|ZP_07016608.1| DNA polymerase III, delta prime subunit, putative [Desulfonatronospira thiodismutans ASO3-1] gi|298510641|gb|EFI34544.1| DNA polymerase III, delta prime subunit, putative [Desulfonatronospira thiodismutans ASO3-1] Length = 277 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 6/105 (5%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + L P G ++VDE+R IR LS + + G WR+++++ MN + ANALLKS+EE Sbjct: 81 FRLTPLEG-----LSVDEVREIRPALSQSPHHG-WRMVVVEEAGEMNASCANALLKSVEE 134 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 P + +F+ +S+ +IL TI SR + L E+L Sbjct: 135 PVSRNIFVFLSNERQSILPTIVSRSFVLTLGRTPGTGLESGQEEL 179 >gi|319941085|ref|ZP_08015421.1| hypothetical protein HMPREF9464_00640 [Sutterella wadsworthensis 3_1_45B] gi|319805442|gb|EFW02244.1| hypothetical protein HMPREF9464_00640 [Sutterella wadsworthensis 3_1_45B] Length = 344 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 17/163 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCS-------PFVKQ 83 RM +A+L G G G L ++ + +P P C C P KQ Sbjct: 22 RMPNAVLLYGAPGAGLYELALAFSKSLFCLSPHSDGTPCGHCTG--CRLAQAGTHPDFKQ 79 Query: 84 MASHA---LHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLTANTGYWRVIMID 137 + S A +D Y + N ++ + + I + +IR + FLSL AN G RV+++ Sbjct: 80 VLSEAQCARYDVAY-EPAENERSDAKKKLSREIRIHQIRVLGDFLSLNANQGGRRVVLVH 138 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 P D + AA +LLKS+EEPP+ ++++L + +L TIRSR Sbjct: 139 PADKLRAEAAASLLKSMEEPPEGLIWVLTAEKLDDVLPTIRSR 181 >gi|300814178|ref|ZP_07094461.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511835|gb|EFK39052.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 577 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 24/255 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ ++ G + + L + + HA LF G +G GK + +A V Sbjct: 7 RKYRPLDFNQMIGQDALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAVNCEHP 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P CN C + + + ++ D + + + N VD+IR ++ + Sbjct: 67 IDGNP---CNK--CKSCLSNLNNTSV-DVVEMDAASNN---------GVDDIRDLKDKVI 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V +++ A NALLK LEEPP ++FIL + I +TI SR Sbjct: 112 YPPTFLKYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQK 171 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKI----AAYGSVARAIKILH----YDCDKI 235 +F+ +S N+ K L+ + M + D V + + G++ A+ +L +D D I Sbjct: 172 FEFSRVSLENIIKRLKYISQMEGKTLDDEVYLLIAKTSDGAMRDALSVLDQLLSFDSDHI 231 Query: 236 -ISSYIDLIHIPRQE 249 I +D++ I E Sbjct: 232 SIEKAMDVLGISSSE 246 >gi|300865074|ref|ZP_07109900.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] gi|300336938|emb|CBN55050.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] Length = 463 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 13/188 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P L G E I++ LS + ++ A LF GE+G GK + R L Sbjct: 5 LPQKYRPHTLSELAGQEYIQRTLSNAVKTNKIAPAYLFAGERGTGKTSTA-RILAKSLNC 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K V+ C +++ S + + S++ VD+ R + Sbjct: 64 TNTDKPTVKPCGNCQSCRSIEKGNSLDVSEIDAASHN------------GVDDARGLIER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D ++ A NALLK LEEPP V+FIL + +L TI SRC Sbjct: 112 SHFAPAISRYRVFILDECHCLSSQAFNALLKCLEEPPHHVVFILCTTEQHKVLPTINSRC 171 Query: 182 LSIKFNSL 189 + F SL Sbjct: 172 QTFLFRSL 179 >gi|121594088|ref|YP_985984.1| DNA-directed DNA polymerase [Acidovorax sp. JS42] gi|120606168|gb|ABM41908.1| DNA-directed DNA polymerase [Acidovorax sp. JS42] Length = 331 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP V F+L + A Sbjct: 107 IRVEAMRDAVEFAQRTSGRGRGKAVLVYPAEQMNHVTANALLKTLEEPPGDVRFVLATEA 166 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 167 AHELLPTIRSRCLG 180 >gi|226941612|ref|YP_002796686.1| DNA polymerase III subunit delta' [Laribacter hongkongensis HLHK9] gi|226716539|gb|ACO75677.1| HolB [Laribacter hongkongensis HLHK9] Length = 329 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ ALL G QGIGK A +L + P A C + C F +H + Sbjct: 20 RLPGALLLAGPQGIGKDRFARFLAQSLLCEQPVADHAACGEC--EACRWFAA--GNHPDY 75 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 +L + K + I ++ IR + F LTA+ G RVI+++P + +N AANAL Sbjct: 76 RYLAPESREDDKGARRLAQIKIEAIRDMIDFAQLTAHRGGRRVIVLEPAEALNLAAANAL 135 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 LK LEEPP+ V FIL++H +L T+ SRC ++ L+ + +AL+ L G Sbjct: 136 LKILEEPPEDVHFILVAHHPRRLLPTLLSRCRTL---VLTPPDAEQALDWLTANG 187 >gi|168184359|ref|ZP_02619023.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Bf] gi|182672504|gb|EDT84465.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Bf] Length = 471 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 24/228 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + + G + K L +G + HA LF G +G GK T FS Sbjct: 6 YRPRFFKDVVGQGENTKILLNQIRTGHIGHAYLFCGNRGSGKTTTARI----------FS 55 Query: 66 KAPVRMCNPDPC-SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 KA + N +P + K++ + D + L + G +++IR I Sbjct: 56 KAVNQHDNGEPLDNELSKKIDAGNCIDIVELDAA--SHNG-------IEDIRNIIEQAQY 106 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +RV +ID V ++ +A NA LK LEEPP+ V+FIL + + T+ SRC Sbjct: 107 APSECKYRVFIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQRF 166 Query: 185 KFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + +++ L E KI + + I A G++ AI IL Sbjct: 167 DFKRIDVTDIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISIL 214 >gi|118469832|ref|YP_890373.1| DNA polymerase III subunit delta' [Mycobacterium smegmatis str. MC2 155] gi|118171119|gb|ABK72015.1| DNA polymerase III subunit delta [Mycobacterium smegmatis str. MC2 155] Length = 402 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 17/163 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A + D V C C MA Sbjct: 36 TGTMTHAWLITGPPGSGRSVAALCFAAALQCTSDG----VPGCGE--CRACTTTMAGTHA 89 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I V E+R I S TG W+V++I+ D + AANA Sbjct: 90 DVRRIVPEGLS---------IAVKEMREIVQIASRRPGTGRWQVVVIEDADRLTEGAANA 140 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLS 190 LLK +EEPP +F+L + + I T+RSRC I + S Sbjct: 141 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHIALTTPS 183 >gi|15645339|ref|NP_207511.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 26695] gi|2313841|gb|AAD07767.1| DNA polymerase III gamma and tau subunits (dnaX) [Helicobacter pylori 26695] Length = 578 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|218892512|ref|YP_002441379.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa LESB58] gi|218772738|emb|CAW28523.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa LESB58] Length = 699 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGECS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|152988097|ref|YP_001349155.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PA7] gi|150963255|gb|ABR85280.1| DNA polymerase III subunit tau [Pseudomonas aeruginosa PA7] Length = 681 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGECS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|59712341|ref|YP_205117.1| DNA polymerase III, delta prime subunit [Vibrio fischeri ES114] gi|59480442|gb|AAW86229.1| DNA polymerase III, delta prime subunit [Vibrio fischeri ES114] Length = 268 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 48/72 (66%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+V++IR+ + ++ RVI+IDP + M +AANALLK+LE PP+ F+L++ + Sbjct: 30 ISVEQIRQCNSWALESSQFNAKRVIIIDPAEKMTESAANALLKTLEAPPKNCQFVLLADS 89 Query: 170 SPTILSTIRSRC 181 +L TIRSRC Sbjct: 90 PHQLLPTIRSRC 101 >gi|168185102|ref|ZP_02619766.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum Bf] gi|237793370|ref|YP_002860922.1| DNA polymerase III subunit delta' [Clostridium botulinum Ba4 str. 657] gi|182671857|gb|EDT83818.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum Bf] gi|229260981|gb|ACQ52014.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum Ba4 str. 657] Length = 314 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIIKGKFSHASIIVGEDGIGKSIIAKEIAMIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G +V Sbjct: 55 ---------QGRSYA--DLIEFK-PINKKS------IGIDDIRNLIEEINKKPIEGNKKV 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEVAQNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRL 152 >gi|330879803|gb|EGH13952.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. race 4] Length = 360 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 15/169 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 MHHA LF G +G+GK T+ A + + P C+ K++ D Sbjct: 1 MHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTCS------VCKEIDEGRFVDL 54 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + + + K V++ R + + + G ++V +ID V ++ ++ NALLK Sbjct: 55 IEIDAASRTK---------VEDTRELLDNVQYVPSRGRFKVYLIDEVHMLSSHSFNALLK 105 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +LEEPP V FIL + + +TI SRCL +++ + + L + Sbjct: 106 TLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTPERVVEHLTHV 154 >gi|322833644|ref|YP_004213671.1| DNA polymerase III, delta prime subunit [Rahnella sp. Y9602] gi|321168845|gb|ADW74544.1| DNA polymerase III, delta prime subunit [Rahnella sp. Y9602] Length = 339 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y +GR HHALL G+G L + + +L + C+ C + +H Sbjct: 18 YLTGRGHHALLMHAAAGMGDEALVYGLSRWLLCRHKDGEKSCGTCHS--CQLMIA--GNH 73 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ + L P+ GK + + +D +R++ L + G +V+ I + + AA Sbjct: 74 P--DW----HILQPEKGK--SSLGIDPVRQLIETLYNYSQQGGAKVVWIPQTEMLTEAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP F+L +L+TIRSRC Sbjct: 126 NALLKTLEEPPAGTYFLLGCREPSALLATIRSRC 159 >gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] Length = 578 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + I L Q + R+ A LF G +G GK T R L + + + C Sbjct: 20 LVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGK-TSSARILARSLNCLNVEEPTINPC- 77 Query: 74 PDPCSPFVKQM--ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + Q A +AL D + + + N TG VD IR + W Sbjct: 78 ---CQCNLCQTISAGNAL-DVIEIDAASN--TG-------VDNIRDLIEKSKFAPVIARW 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID ++ A NALLK+LEEPP +V+FIL + +L TI SRC F+ + Sbjct: 125 KIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFSQIEL 184 Query: 192 NNLYKALEQL 201 N+L L+++ Sbjct: 185 NDLINHLQEI 194 >gi|327480432|gb|AEA83742.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri DSM 4166] Length = 672 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGQCS------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPSRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + + L Sbjct: 170 CLQFSLKNMPPERVVEHL 187 >gi|296271415|ref|YP_003654047.1| DNA polymerase III subunit delta' [Thermobispora bispora DSM 43833] gi|296094202|gb|ADG90154.1| DNA polymerase III, delta prime subunit [Thermobispora bispora DSM 43833] Length = 394 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 11/139 (7%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G WR+++ + D + AANALLK++EEPPQ+ +++L + A ++ TIRSRC +K ++ Sbjct: 112 GRWRIVLFEDADRLTEEAANALLKAIEEPPQRTVWLLCAPAPDDLIITIRSRCRVVKLHA 171 Query: 189 LSENNLYKALEQLKIMGWDS-KRD---FVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 S + + L M D R+ F AA G V RA + L D ++ +++ Sbjct: 172 PSTEAVAEVL-----MSRDGVPREMAFFAARAAQGHVERA-RRLALD-EEARRRRDEVLS 224 Query: 245 IPRQEYALQKMQQIADELL 263 IPR + + A+ L+ Sbjct: 225 IPRSLTGIGECVSAAERLV 243 >gi|282600964|ref|ZP_05980279.2| DNA polymerase III subunit gamma/tau [Subdoligranulum variabile DSM 15176] gi|282570162|gb|EFB75697.1| DNA polymerase III subunit gamma/tau [Subdoligranulum variabile DSM 15176] Length = 616 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 125/284 (44%), Gaps = 31/284 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G I L +GR+ HA LF G +G GK T F A + L + Sbjct: 50 RKWRPQRFADVVGQTPIVTALQNQIAAGRIGHAYLFTGTRGTGKTTCAKIFAKAVNCLDH 109 Query: 62 PDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +PDPC K + S A+ D + + + N VD+IR +R Sbjct: 110 ----------TSPDPCCECEICKGIDSGAIMDIIEMDAASN---------NGVDDIRDLR 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ + ++V +ID V ++ A NALLK++EEPP+ V+FIL + + TI S Sbjct: 151 DEVAYLPSVCRYKVYIIDEVHMLSTQAFNALLKTMEEPPEHVIFILATTEVQKVPVTILS 210 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F ++ ++ L EQ KI + A G++ A+ IL D Sbjct: 211 RCQRYDFARITAKDIAGRLTYVAEQEKIELESGAAQLIGRLADGAMRDALSIL--DTCAG 268 Query: 236 ISSYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDFLIEF 277 + +++D + R + + +I+D + ++D A + E Sbjct: 269 VDNHVDEALVRRMAGVTDRGYLFEISDAIAAKDSVAALGKIAEL 312 >gi|110597040|ref|ZP_01385329.1| DNA polymerase III, delta subunit, putative [Chlorobium ferrooxidans DSM 13031] gi|110341231|gb|EAT59696.1| DNA polymerase III, delta subunit, putative [Chlorobium ferrooxidans DSM 13031] Length = 389 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 33/216 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV------LQN---- 61 + + G + + L + + R HA LF G +G GK ++ F A + LQN Sbjct: 4 KNIIGQKQQIRVLQKALETDRFAHAYLFTGPEGSGKESVAFELASILNCRTASLQNGEGS 63 Query: 62 ----PDFSKA------------PVRMCNPDPCSPFVKQ----MASHALHDFLYLSYSLNP 101 PD + PV DP K+ + ++ L NP Sbjct: 64 CETCPDCMQVRSFMHQNIEYLFPVESALLDPGEGAKKENKKFTEARERYEALLEQKKENP 123 Query: 102 --KTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 R++ I ++I +++ S G ++ +I D ++ +AAN LLK LEEPP Sbjct: 124 YFSPAMERSMGILTEQIIALQHKASFMPGEGSKKIFIISQADRLHPSAANKLLKLLEEPP 183 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 VLFIL++ +L TIRSRC +++F ++ L Sbjct: 184 AHVLFILVTSRPDGLLPTIRSRCQALRFTKVTAREL 219 >gi|62184957|ref|YP_219742.1| DNA polymerase III subunits gamma and tau [Chlamydophila abortus S26/3] gi|62148024|emb|CAH63776.1| DNA polymerase III subunit gamma/tau [Chlamydophila abortus S26/3] Length = 443 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 22/233 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L R+ HA LF G +G GK TL R L + Sbjct: 11 RKYRPQTFAEMLGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLA-RIFAKALNCKE 69 Query: 64 FSK--APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C K+++S D + + + + +++IR+I Sbjct: 70 LTPEHEPCNQC----C--VCKEISSGTSLDVIEIDGASHRG---------IEDIRQINET 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I STI SRC Sbjct: 115 VLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPSTILSRC 174 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW--DSKRDFVKI--AAYGSVARAIKILHY 230 + + E + L + G S+ + I AA GS+ A + Y Sbjct: 175 QKMHLKRIPETMIVDKLASISQAGGIETSREALLPIARAAQGSLRDAESLYDY 227 >gi|326336645|ref|ZP_08202813.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691115|gb|EGD33086.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 363 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 33/238 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A + + Sbjct: 9 RKYRPQTFKDVVGQQAITDTLENAIANDHLAQALLFTGPRGVGKTTCARILAKKINEKTT 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ +DF + + L+ + +V+ IR + + Sbjct: 69 STQ--------------------EEDNDFAFNIFELDAASNN-----SVEGIRSLIEQVR 103 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP +FIL + ++ TI SRC Sbjct: 104 IPPQVGKYKVYIIDEVHMLSNAAFNAFLKTLEEPPAHAIFILATTEKHKVIPTILSRCQI 163 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIIS 237 F ++ N+ + L+ + K G +++ + ++I A G++ A+ I D+++S Sbjct: 164 FDFKRITINDAREYLKYIAKEQGLNAEDEALQIIAQKADGAMRDALSIF----DRVVS 217 >gi|225552254|ref|ZP_03773194.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1] gi|225371252|gb|EEH00682.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1] Length = 560 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 39/262 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 ++ +A +F G +G+GK + +A + + P M PC K + + + Sbjct: 36 NKIANAYIFSGPRGVGKTSSARAFARCL----NCRNGPTVM----PCGECSNCKSIENDS 87 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D + + + N +V +IR+I+ + +R+ +ID V ++ +A N Sbjct: 88 SLDVVEIDGASNT---------SVQDIRQIKEEIMFPPAISKYRIYIIDEVHMLSNSAFN 138 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIM 204 ALLK++EEPP ++FI + S + TI+SRC F LS +Y L+++ I Sbjct: 139 ALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKKVCLEDDIK 198 Query: 205 GWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS---SYIDLIHIPRQEYALQKMQQIADE 261 D ++ + GSV A + D+I+S S I L I KM DE Sbjct: 199 YEDEALKWIAYKSSGSVRDAYTLF----DQIVSFTDSNIKLDQIR------SKMGLTNDE 248 Query: 262 LLSQDQKIAFDFLIEFILKEIC 283 L +K++ L E + + IC Sbjct: 249 FL---EKLSVSILGEDVKELIC 267 >gi|108563127|ref|YP_627443.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori HPAG1] gi|107836900|gb|ABF84769.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori HPAG1] Length = 572 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|309808245|ref|ZP_07702154.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 01V1-a] gi|308168533|gb|EFO70642.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 01V1-a] Length = 173 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + + G I L ++ HA LF G +G GK + F A + + + Sbjct: 8 RRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMDS 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D +PC+ +A+ L+D + + + N VDEIR IR Sbjct: 68 KD----------GEPCNQCSNCLAADKGILNDIIEIDAASNNG---------VDEIRAIR 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + Sbjct: 109 DKVKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILAT 156 >gi|308186415|ref|YP_003930546.1| DNA polymerase III, delta' subunit [Pantoea vagans C9-1] gi|308056925|gb|ADO09097.1| DNA polymerase III, delta' subunit [Pantoea vagans C9-1] Length = 329 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 30/311 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHALL + G+G L + + ++ Q PD K+ C+ + M ++ Sbjct: 22 RAHHALLIQAMAGMGDDALVWGMSRWLMCQQPDGLKS-CGSCH------GCQLMQANTHP 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ Y L + GK + + +D +R++ + G +V+ + ++ AANAL Sbjct: 75 DW----YRLEAEKGK--STLGIDAVRQVTEKMYHFGQQGGAKVVWLPDAAQLSEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK+LEEPP F L S +L+T+RSRC+++ E ++L LK S Sbjct: 129 LKTLEEPPANSWFFLSSRDPSRLLATLRSRCMTLHLTPPDEG---QSLLWLKKQ--SSHD 183 Query: 211 DFVKIAAY----GSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQD 266 + + +AA G+ A+ +L + D + Q Q + Q+ L + D Sbjct: 184 EQMLLAALRLSAGAPGAALSLLENGPWQARQKLCDALPAALQ----QDILQLLPALNADD 239 Query: 267 QKIAFDFLIEFILKEICKSAKAAALSGQLEEAD--QIAQIYFSLVKRVHAFSMYNLDRRQ 324 +L+ +L + A ++ D Q+ YFS +++ ++ + R+ Sbjct: 240 AAARIGWLLSLLLDAMKWQQNAGQWLSNIDRQDVVQLLAGYFS-ASALNSSTLAWMRCRE 298 Query: 325 MIFHLLSKARE 335 + H+ S RE Sbjct: 299 QLLHVASVNRE 309 >gi|148285033|ref|YP_001249123.1| DNA polymerase III subunits gamma and tau [Orientia tsutsugamushi str. Boryong] gi|146740472|emb|CAM81007.1| DNA polymerase III gamma and tau chains [Orientia tsutsugamushi str. Boryong] Length = 559 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 19/232 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P L G E + K L+ +G + A L G +G+GK T A + LQ Sbjct: 13 RKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAARIIATTINCLQ- 71 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + + C C+ + M +++ D + + RT+I E + + Sbjct: 72 PVVTSKTIFACT--KCNSCI-AMENNSHPDINEIDAASRTGVDDVRTIIDDSEYKPL--- 125 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++++A NALLK LEEPP +FI + I T+ SRC Sbjct: 126 ------ISKYKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRC 179 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 L NN+ + L + + +F+ + A GS A+ +L Sbjct: 180 QKFDLRRLDINNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAVSLLE 231 >gi|217033199|ref|ZP_03438649.1| hypothetical protein HPB128_162g4 [Helicobacter pylori B128] gi|298736418|ref|YP_003728944.1| DNA polymerase III subunit gamma/tau [Helicobacter pylori B8] gi|216945073|gb|EEC23784.1| hypothetical protein HPB128_162g4 [Helicobacter pylori B128] gi|298355608|emb|CBI66480.1| DNA polymerase III subunit gamma/tau [Helicobacter pylori B8] Length = 558 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|329849471|ref|ZP_08264317.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis biprosthecum C19] gi|328841382|gb|EGF90952.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis biprosthecum C19] Length = 602 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 35/245 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T Y Sbjct: 44 VLARKYRPRTFEDLIGQEAMVRTLTNAFSAGRIAHAFMLTGVRGVGKTTTARLLARALNY 103 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLY---LSYSLNPKTGKWRTV 109 +Q+ P S + M H A+ D + L +TG Sbjct: 104 ESDTVQSSGGRGGP---------SVDLTTMGIHCQAIIDGRHIDVLELDAASRTG----- 149 Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 VD +R + + ++V +ID V ++ A NALLK+LEEPP FI + Sbjct: 150 --VDAMRDLLESVRYAPVEARYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTE 207 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR---DFVKI---AAYGSVAR 223 + TI SRC + L LE KI G + R D V + AA GSV Sbjct: 208 IRKVPVTILSRCQRFDLRRVEPETLTPHLE--KICGLEGVRIDADAVALIARAAEGSVRD 265 Query: 224 AIKIL 228 ++ +L Sbjct: 266 SLSLL 270 >gi|325287470|ref|YP_004263260.1| DNA polymerase III subunits gamma and tau [Cellulophaga lytica DSM 7489] gi|324322924|gb|ADY30389.1| DNA polymerase III, subunits gamma and tau [Cellulophaga lytica DSM 7489] Length = 599 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 41/241 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + + ALLF G +G+GK T A Sbjct: 9 RKYRPQTFKDVVGQQAITNTLLNAIQNNHLAQALLFTGPRGVGKTTCARILA-------- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +M N D + DF + + L+ + +VD IR + + Sbjct: 61 ------KMINSD--------GEENPEEDFAFNIFELDAASNN-----SVDGIRSLIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 102 IPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQLKIM----GWDSKRDFVKIAAY---GSVARAIKILHYDCDKII 236 F ++ + A E LK + G ++ D + I A G++ A+ I D+++ Sbjct: 162 FDFKRIT---VKDAAEYLKYIAENQGIEADDDALHIIAQKADGAMRDALSIF----DRVV 214 Query: 237 S 237 S Sbjct: 215 S 215 >gi|313113069|ref|ZP_07798703.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624607|gb|EFQ07928.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 333 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 12/184 (6%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ G+ +++ + + R+ H++L GE+G+G A L AP Sbjct: 17 RMEGNAELKSSVQLMLAARRLTHSVLLVGEEGLGAGFAARCIAADYLY--PAGGAPAEAL 74 Query: 73 NPDPCSPFVKQM----ASHALHDFL--YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 C V + + H + +S + GK+ V +++ +R + T+ Sbjct: 75 LRGECCRAVGKPGDRDSGHVETGIVREAISVAGMGAGGKY----LVSQVKAMRSEIFNTS 130 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + R +++ V+ MN +ANALLK +EEPP+ VLF+L + + +L TIRSRC+S Sbjct: 131 LSAEGRAVLLYHVEKMNEESANALLKVMEEPPEGVLFLLTADSLAGVLPTIRSRCVSFAV 190 Query: 187 NSLS 190 +S Sbjct: 191 APVS 194 >gi|168181167|ref|ZP_02615831.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum NCTC 2916] gi|182668000|gb|EDT79979.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum NCTC 2916] Length = 314 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G +V Sbjct: 55 ---------QQRSYA--DLIEFK-PINKKS------IGIDDIRDLIEEINKKPIEGNKKV 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEVAQNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRL 152 >gi|15611722|ref|NP_223373.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori J99] gi|4155207|gb|AAD06231.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99] Length = 582 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCKTGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|109947487|ref|YP_664715.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis str. Sheeba] gi|109714708|emb|CAJ99716.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis str. Sheeba] Length = 576 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 26/241 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM----CE 63 Query: 66 KAPVRMCNPDPCSPFVK-QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P M PC ++ Q A + H D + + + N R +I + RY S Sbjct: 64 AGPKAM----PCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLI-----EQTRYKPS 114 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 115 F----GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPTTILSRTQH 170 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKII 236 +F + EN+ L LE+ ++ +S + + + GS+ + +L CD I Sbjct: 171 FRFKKIPENSVISHLKTILEKEQVYYEESALEKLAHSGQGSLRDTLTLLEQAINYCDNAI 230 Query: 237 S 237 + Sbjct: 231 T 231 >gi|302520928|ref|ZP_07273270.1| DNA polymerase III subunit delta' [Streptomyces sp. SPB78] gi|302429823|gb|EFL01639.1| DNA polymerase III subunit delta' [Streptomyces sp. SPB78] Length = 401 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ- 83 Q RM HA LF G G G+A +A LQ +P R +P F + Sbjct: 35 GQAASGSRMTHAWLFTGPPGSGRAEAARAFA-AALQ----CVSPDRALGGEPGCGFCEGC 89 Query: 84 ----MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +HA +F+ I V E R + L+ TG W+VI+++ Sbjct: 90 HTALIGTHADVEFVRTDL----------LSIGVKETRDLVRRAQLSPATGRWQVIVLEDA 139 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D + A N LLK++EEP + +++L + + +L TIRSRC + + + + L Sbjct: 140 DRLTEGAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLSLRTPPVDAVADLL- 198 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARAIK 226 +RD V A SVARA + Sbjct: 199 --------VRRDGVDPALAASVARATQ 217 >gi|13357643|ref|NP_077917.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762399|ref|YP_001752167.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508454|ref|ZP_02957993.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11356842|pir||F82935 DNA polymerase III gamma-tau subunits UU087 [imported] - Ureaplasma urealyticum gi|6899039|gb|AAF30492.1|AE002108_5 DNA polymerase III gamma-tau subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827976|gb|ACA33238.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675865|gb|EDT87770.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 597 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + I++ L + ++ HA +F G +GIGK ++ +A + NP Sbjct: 8 RKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINCLNP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + C+ C +K+ + D + L + N + R I D I + F Sbjct: 68 NKGDCCGK-CSV--CESILKEQSV----DLIELDAASNNGVDQIR--IITDNINYLPTFF 118 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ +A NALLK++EEPPQ V+FI + I TI SRC Sbjct: 119 K-------YKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F L+ + L + ++ + Sbjct: 172 RYDFKRLNNSELQELIDSI 190 >gi|15835228|ref|NP_296987.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum Nigg] gi|270285399|ref|ZP_06194793.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum Nigg] gi|270289413|ref|ZP_06195715.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum Weiss] gi|301336796|ref|ZP_07224998.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum MopnTet14] gi|7190650|gb|AAF39442.1| DNA polymerase III, gamma subunit [Chlamydia muridarum Nigg] Length = 465 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 20/223 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRM 71 + G + + L R HA +F G +G GK TL +A + Q+P ++ P Sbjct: 18 EILGQDMVVSILKNSLRLNRSAHAYIFSGIRGTGKTTLARVFAKALNCQSPTENQEPCNQ 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C A+ + L S++ + +++IR+I + + + Sbjct: 78 C---------------AICKEISLGTSMDVMEIDGASHRGIEDIRQINETVLFVPSKSRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID V + + A N+LLK+LEEPP V F L + I +TI SRC + + E Sbjct: 123 KIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRIPE 182 Query: 192 NNLYKALEQLKIMG--WDSKRDFVKI--AAYGSVARAIKILHY 230 + L + +G S+ + I AA GS+ A + Y Sbjct: 183 ETIIDKLTTIAKLGKIEASREALLPIAKAAQGSLRDAESLYDY 225 >gi|317009270|gb|ADU79850.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori India7] Length = 573 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|212637875|ref|YP_002314395.1| DNA polymerase III subunit delta' [Anoxybacillus flavithermus WK1] gi|212559355|gb|ACJ32410.1| ATPase involved in DNA replication HolB [Anoxybacillus flavithermus WK1] Length = 332 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K ++ GR+ HA LF+G++G GK +A + P +C Sbjct: 13 VAKTITNSIRKGRVAHAYLFKGQKGTGKKEAALLFAKRLFCLTHVHDEPCEICVN----- 67 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +++ S D + N I +I +++ + TA ++ +I+ Sbjct: 68 -CRRIESGNHPDVHLVIPDGNS--------IKKQQIEQLQEEFTKTAVESSRKLYIIEHA 118 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D M AAN+LLK LEEP K + IL++ IL TI SRC + F+ LS +Y L+ Sbjct: 119 DQMTVQAANSLLKFLEEPSAKTVAILLTEQFHRILPTIVSRCQVVSFHPLSTERIYAYLQ 178 Query: 200 Q 200 Q Sbjct: 179 Q 179 >gi|170077872|ref|YP_001734510.1| DNA polymerase III subunit delta' [Synechococcus sp. PCC 7002] gi|169885541|gb|ACA99254.1| DNA polymerase III delta' subunit [Synechococcus sp. PCC 7002] Length = 317 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 10/193 (5%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL--GFRYAGHVLQNPDFSKAPVR 70 ++ G L Q R+ A LF G +GIG++ GF A + P+ ++ +R Sbjct: 6 QVLGQPQAVSLLRQAIAQDRLAPAYLFAGPEGIGRSLTARGFTTALMTQEVPEAAQRLIR 65 Query: 71 ---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 + N P +V+ H LY K + I +++IR++ FLS Sbjct: 66 YKLLKNNHPDLLWVEPTYQH--QGKLYTPAQAQEAGLKRKAPPQIRIEQIRQLGEFLSRP 123 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A V++I+ M ANALLK+LEEP L IL++ + ++L T+ SRC I Sbjct: 124 ALEAPRCVVVIEAAQTMAEAPANALLKTLEEPGNATL-ILLAPSGDSLLPTLVSRCQKIP 182 Query: 186 FNSLSENNLYKAL 198 F LS++++ + L Sbjct: 183 FYRLSQDDVAQIL 195 >gi|87301610|ref|ZP_01084450.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701] gi|87283827|gb|EAQ75781.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701] Length = 607 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L G E + L+ R+ A LF G +G GK T R L N + P Sbjct: 21 QLVGQEAVASTLTSALRQNRIAPAYLFSGPRGTGK-TSSARILARSL-NCLTAAGP---- 74 Query: 73 NPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 PDPC + + + D + + + N TG VD IR + Sbjct: 75 TPDPCGSCELCRSITAGNALDVIEIDAASN--TG-------VDNIRELIERSRFAPVQAR 125 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 W+V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC F Sbjct: 126 WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDF 181 >gi|318060889|ref|ZP_07979610.1| DNA polymerase III subunit delta' [Streptomyces sp. SA3_actG] gi|318075924|ref|ZP_07983256.1| DNA polymerase III subunit delta' [Streptomyces sp. SA3_actF] Length = 401 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ- 83 Q RM HA LF G G G+A +A LQ +P R +P F + Sbjct: 35 GQAASGSRMTHAWLFTGPPGSGRAEAARAFA-AALQ----CVSPDRALGGEPGCGFCEGC 89 Query: 84 ----MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + +HA +F+ I V E R + L+ TG W+VI+++ Sbjct: 90 HTALIGTHADVEFVRTDL----------LSIGVKETRDLVRRAQLSPATGRWQVIVLEDA 139 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D + A N LLK++EEP + +++L + + +L TIRSRC + + + + L Sbjct: 140 DRLTEGAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLSLRTPPVDAVADLL- 198 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARAIK 226 +RD V A SVARA + Sbjct: 199 --------VRRDGVDPALAASVARATQ 217 >gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum 'So ce 56'] gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum 'So ce 56'] Length = 829 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 27/243 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R + P + L G E + L+ R+ HA LF G +G+GK T A + Sbjct: 41 VLARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAKALNC 100 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P + P + C P C+ + A + + SY+ VDE+R++ Sbjct: 101 VHGP--TATPCQTCAP--CA-EITVGADVDVQEIDGASYN------------GVDEVRKL 143 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + L +++ ++D V ++ A NA LK+LEEPP V FI + + TI Sbjct: 144 QESLPYRPARDRFKIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTIL 203 Query: 179 SRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + L L+Q KI D + A GS+ A+ +L D+ Sbjct: 204 SRCQRYDFKLIGAQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLL----DQ 259 Query: 235 IIS 237 +I+ Sbjct: 260 VIA 262 >gi|308182878|ref|YP_003927005.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori PeCan4] gi|308065063|gb|ADO06955.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori PeCan4] Length = 592 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCIQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKIIS 237 F + EN+ L LE+ ++ S + + + GS+ I +L CD I+ Sbjct: 173 FKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAIT 231 >gi|308049574|ref|YP_003913140.1| DNA polymerase III, delta prime subunit [Ferrimonas balearica DSM 9799] gi|307631764|gb|ADN76066.1| DNA polymerase III, delta prime subunit [Ferrimonas balearica DSM 9799] Length = 301 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 17/151 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HAL+ +G G+GK+ L +L + C Q+ + H Sbjct: 22 GRLGHALILQGPAGVGKSLLADWIVSRLLCLEGRGCGHCKGC----------QLLAAGHH 71 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 Y L P+ + I VD +R + L+ TA+ G RV +I +N +ANAL Sbjct: 72 PD---RYELAPEGQQ----IKVDAVRGLISQLAGTAHQGGARVAIIHQAQRLNAASANAL 124 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEPP V +L+ +L TI SRC Sbjct: 125 LKTLEEPPAGVYLVLVVGPGQPLLPTIVSRC 155 >gi|148241354|ref|YP_001226511.1| DNA polymerase III subunit delta' [Synechococcus sp. RCC307] gi|147849664|emb|CAK27158.1| DNA polymerase III delta prime subunit [Synechococcus sp. RCC307] Length = 310 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 22/193 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY-----AGHVLQNPDFSKAPVR 70 G + + L+ R+ A LF G G+G++ R+ AG +PD + + Sbjct: 11 GQQQALELLTAALNQQRLAPAYLFAGPDGVGRSLTARRFLEGLCAGGAQPDPDLRRRLQQ 70 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV-------ITVDEIRRIRYFLS 123 +PD +V+ +L + K R + I +++IR + FL+ Sbjct: 71 GNHPDLI--WVE-------PTYLEKGERITATEAKERGLSKKTLPQIRLEQIREVSRFLA 121 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++I+ + M +AANALLK+LEEP Q L +LI+ A +L+TI SRC Sbjct: 122 RPPLDASRSMVVIEQAEAMAESAANALLKTLEEPGQG-LLVLITAAPERLLATILSRCQR 180 Query: 184 IKFNSLSENNLYK 196 I F L + + + Sbjct: 181 IPFKPLPAHTMLQ 193 >gi|238795971|ref|ZP_04639483.1| DNA polymerase III subunit delta' [Yersinia mollaretii ATCC 43969] gi|238720176|gb|EEQ11980.1| DNA polymerase III subunit delta' [Yersinia mollaretii ATCC 43969] Length = 335 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 SGR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 SGRGHHALLLHALPGNGEEALIYGLSRWLMCQQRQGEKSCGECHS------CRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P+ GK + I V+ +R+ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLGPEKGK--SSIGVELVRQQIEKLYSHAQQGGAKVVWLPHAEQLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+ F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPENTYFLLDCHQPASLLATLRSRC 159 >gi|238061528|ref|ZP_04606237.1| DNA polymerase III, gamma subunit [Micromonospora sp. ATCC 39149] gi|237883339|gb|EEP72167.1| DNA polymerase III, gamma subunit [Micromonospora sp. ATCC 39149] Length = 428 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ SGR++HA LF G +G GK + A + ++ + Sbjct: 28 RKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTS----SARILARSLN 83 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P+PC + +A + G VD+ R +R Sbjct: 84 CEQGP----TPEPCGQCDSCRSLAIDGSGSIDVIEIDAASHGG-------VDDARELREK 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 133 AFFAPARSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 192 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 193 HHYPFRLIPPKTLRPYLEQL 212 >gi|296533588|ref|ZP_06896155.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis ATCC 49957] gi|296266081|gb|EFH12139.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis ATCC 49957] Length = 444 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 18/198 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ HA + G +G+GK T R L Sbjct: 58 VLARKYRPQTFADLIGQDALVRTLRNAFAQNRVAHAFMLTGVRGVGKTTTA-RIIARALN 116 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIR 116 PD + P DPC + A A D L L + N VD IR Sbjct: 117 CVGPDGNGGP----TADPCGVCAECQAILADRHPDVLELDAASN---------NGVDNIR 163 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +R + ++V ++D V ++ A NALLK+LEEPP +V F+ + + +T Sbjct: 164 ELREAVRYRPARARFKVYILDEVHMLSTAAFNALLKTLEEPPPQVKFLFATTEIRKVPAT 223 Query: 177 IRSRCLSIKFNSLSENNL 194 I SRC + + L Sbjct: 224 ILSRCQRFDLKRVPQEQL 241 >gi|171920146|ref|ZP_02690996.2| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701643|ref|ZP_02971345.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902514|gb|EDT48803.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700883|gb|EDU19165.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 597 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + + G + I++ L + ++ HA +F G +GIGK ++ +A + NP Sbjct: 8 RKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINCLNP 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + C+ C +K+ + D + L + N + R I D I + F Sbjct: 68 NKGDCCGK-CSV--CESILKEQSV----DLIELDAASNNGVDQIR--IITDNINYLPTFF 118 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ +A NALLK++EEPPQ V+FI + I TI SRC Sbjct: 119 K-------YKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL 201 F L+ + L + ++ + Sbjct: 172 RYDFKRLNNSELQELIDSI 190 >gi|238791473|ref|ZP_04635111.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909] gi|238729089|gb|EEQ20605.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909] Length = 658 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITATPCGTC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRCL + + LE++ Sbjct: 162 LPVTILSRCLQFHLKVIDVEVIRGQLEKI 190 >gi|317010938|gb|ADU84685.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SouthAfrica7] Length = 594 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 31/222 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 8 YRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEKGPK 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C+ + +H + D + + + N R +I + RY S Sbjct: 68 AVP---C--DTCAQCQSALNNHHI-DIIEMDGASNRGIDDVRNLI-----EQTRYKPSF- 115 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR + Sbjct: 116 ---GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFR 172 Query: 186 FNSLSENNLY----------------KALEQLKIMGWDSKRD 211 F + EN++ ALE+L G S RD Sbjct: 173 FKKIPENSVISHLKTILEKEQVHYEASALEKLAHSGQGSLRD 214 >gi|169343396|ref|ZP_02864400.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens C str. JGS1495] gi|169298482|gb|EDS80568.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens C str. JGS1495] Length = 547 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S+ + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISKKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|293414392|ref|ZP_06657041.1| DNA polymerase III subunit delta [Escherichia coli B185] gi|331652151|ref|ZP_08353170.1| DNA polymerase III subunit delta' [Escherichia coli M718] gi|291434450|gb|EFF07423.1| DNA polymerase III subunit delta [Escherichia coli B185] gi|331050429|gb|EGI22487.1| DNA polymerase III subunit delta' [Escherichia coli M718] Length = 334 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L +H +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATHEPERLLATLRSRC 159 >gi|261879564|ref|ZP_06005991.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella bergensis DSM 17361] gi|270333795|gb|EFA44581.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella bergensis DSM 17361] Length = 381 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 42/266 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL------QNPDFSKA 67 + G ++ L Q R+ HAL+F G G GK L +A ++L Q S+A Sbjct: 6 VIGQQEACHRLLQMVADQRVPHALMFTGPSGSGKMALALAFASYLLGERADGQTLLQSEA 65 Query: 68 PVRMC--------NPDP--CSPFVKQMASHALH-----DFLYLSYSL---NP--KTGKW- 106 +R +PD P ++ + H DFL L P +W Sbjct: 66 ALRNAEAMLSKWQHPDLHFTFPVIRPKGISSDHKVTSDDFLKEWRELLHRGPYFTINQWM 125 Query: 107 --------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + VI E + + L++ + G ++V +I + MN +AN LLK LEEPP Sbjct: 126 NCMDAENQQAVIYEAESDALNHKLNIKSRQGGYKVSLIWLPERMNLTSANKLLKLLEEPP 185 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-- 216 K +F+L+S +L TIRSR + + ++ +AL + + +G D D ++IA Sbjct: 186 AKTVFLLVSEEPERLLETIRSRVQRFDIHRIDTADMSRALVERRGIGSD---DAMRIART 242 Query: 217 AYGSVARAIKILHYDCDKIISSYIDL 242 + G+ +A++ L D + + DL Sbjct: 243 SNGNWLKALEQL--DAENENKQFFDL 266 >gi|237748460|ref|ZP_04578940.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] gi|229379822|gb|EEO29913.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] Length = 355 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 120/263 (45%), Gaps = 24/263 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSK-APVRMCN-------PD----- 75 ++ HALLF G G G + +A L + PD + + C+ PD Sbjct: 26 KLPHALLFYGPAGTGVESFAESFAKARLCENRQPDGNACGGCQSCHWFDQNSHPDFRQIL 85 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 P + + + S + + KT + I ++ IR + F++++ + G RV+ Sbjct: 86 PETLEIAKGLDDPDKKTDDDSGASDKKTREPSKKIGIERIRSLADFINISTHRGGLRVVS 145 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 + P + M ++N+LLK LEEPP LFIL ++ +L TI SRC + F + E ++ Sbjct: 146 VYPAEAMTTESSNSLLKMLEEPPANTLFILTTNHLDALLPTILSRCSKLAF-PMPETSM- 203 Query: 196 KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYAL--- 252 A+ LK G D ++ G+ A++ + ++ ++ + P L Sbjct: 204 -AIGWLKEQGVDEAESWLAEQG-GAPVTALEESRSGSREEMTLFLAELAAPDDSGLLRTA 261 Query: 253 QKMQQIA-DELLSQDQKIAFDFL 274 +K+Q++ +L++ Q+ +D L Sbjct: 262 EKLQKVPLSDLITWHQRWLYDLL 284 >gi|149909474|ref|ZP_01898128.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella sp. PE36] gi|149807379|gb|EDM67330.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella sp. PE36] Length = 814 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q++ G + + L R+HHA L G +G+GK T+ +A + Sbjct: 5 VLARKWRPHNFQQVVGQQHVLTALVNALEQDRLHHAYLLSGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ D L + + K V++ R + Sbjct: 65 EKGITSTPCGECS------TCVEIDQGCYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL L+ + + L Sbjct: 170 CLQFHLKCLTTEQISQQL 187 >gi|254489982|ref|ZP_05103177.1| hypothetical protein MDMS009_313 [Methylophaga thiooxidans DMS010] gi|224465067|gb|EEF81321.1| hypothetical protein MDMS009_313 [Methylophaga thiooxydans DMS010] Length = 308 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 17/172 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 RM HA+L G QG+GK +L Q D +A C+ C SH+ Sbjct: 6 RMPHAILLSGIQGLGKRAFADTLIASLLCQQQTDQFEA-CGHCHS--CQLLAA--GSHSD 60 Query: 90 HDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H + P+ GK I VD+IR ++ +L + + ++I D MN +A N Sbjct: 61 HTLI------TPEDIGKQ---IKVDQIRELKASQTLMPKVSHGKTVLITHADQMNLSAYN 111 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +LLK LEEP + ILIS S + TI+SRC I + +E LEQ Sbjct: 112 SLLKLLEEPQPNSVLILISENSQQLPITIKSRCQKIVIATPNEEESLDWLEQ 163 >gi|171920556|ref|ZP_02931825.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903253|gb|EDT49542.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 603 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I++ L + + HA +F G +GIGK ++ +A + Sbjct: 8 RKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASI----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ N D C + + + D + L + N VD++R I Sbjct: 63 ---NCLKPNNGDCCGECSVCQSIINEQSVDLIELDAASNN---------GVDQMRNITDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID ++ +A NALLK++EEPPQ V+FI + I TI SRC Sbjct: 111 INYLPTLFKYKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE 199 FN L+ + L + ++ Sbjct: 171 QRYDFNRLNNSELQELID 188 >gi|15610780|ref|NP_218161.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis H37Rv] gi|31794814|ref|NP_857307.1| DNA polymerase III subunit delta' [Mycobacterium bovis AF2122/97] gi|121639557|ref|YP_979781.1| DNA polymerase III subunit delta' [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663507|ref|YP_001285030.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis H37Ra] gi|148824846|ref|YP_001289600.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis F11] gi|167968566|ref|ZP_02550843.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis H37Ra] gi|215405691|ref|ZP_03417872.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis 02_1987] gi|215413564|ref|ZP_03422236.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis 94_M4241A] gi|215424887|ref|ZP_03422806.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis T92] gi|215432617|ref|ZP_03430536.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis EAS054] gi|219559715|ref|ZP_03538791.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis T17] gi|224992054|ref|YP_002646743.1| DNA polymerase III subunit delta [Mycobacterium bovis BCG str. Tokyo 172] gi|254552756|ref|ZP_05143203.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184561|ref|ZP_05762035.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis CPHL_A] gi|260198684|ref|ZP_05766175.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis T46] gi|260202827|ref|ZP_05770318.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis K85] gi|289441074|ref|ZP_06430818.1| DNA polymerase [Mycobacterium tuberculosis T46] gi|289445238|ref|ZP_06434982.1| DNA polymerase [Mycobacterium tuberculosis CPHL_A] gi|289555905|ref|ZP_06445115.1| DNA polymerase [Mycobacterium tuberculosis KZN 605] gi|289571881|ref|ZP_06452108.1| DNA polymerase [Mycobacterium tuberculosis T17] gi|289572291|ref|ZP_06452518.1| DNA polymerase [Mycobacterium tuberculosis K85] gi|289748157|ref|ZP_06507535.1| DNA polymerase [Mycobacterium tuberculosis T92] gi|289755770|ref|ZP_06515148.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis EAS054] gi|294995444|ref|ZP_06801135.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis 210] gi|297636319|ref|ZP_06954099.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis KZN 4207] gi|297733312|ref|ZP_06962430.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis KZN R506] gi|298527118|ref|ZP_07014527.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis 94_M4241A] gi|313660644|ref|ZP_07817524.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis KZN V2475] gi|2105050|emb|CAB08836.1| POSSIBLE DNA POLYMERASE [Mycobacterium tuberculosis H37Rv] gi|31620411|emb|CAD95854.1| DNA POLYMERASE [Mycobacterium bovis AF2122/97] gi|121495205|emb|CAL73691.1| DNA polymerase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507659|gb|ABQ75468.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis H37Ra] gi|148723373|gb|ABR07998.1| hypothetical DNA polymerase [Mycobacterium tuberculosis F11] gi|224775169|dbj|BAH27975.1| DNA polymerase III subunit delta [Mycobacterium bovis BCG str. Tokyo 172] gi|289413993|gb|EFD11233.1| DNA polymerase [Mycobacterium tuberculosis T46] gi|289418196|gb|EFD15397.1| DNA polymerase [Mycobacterium tuberculosis CPHL_A] gi|289440537|gb|EFD23030.1| DNA polymerase [Mycobacterium tuberculosis KZN 605] gi|289536722|gb|EFD41300.1| DNA polymerase [Mycobacterium tuberculosis K85] gi|289545635|gb|EFD49283.1| DNA polymerase [Mycobacterium tuberculosis T17] gi|289688744|gb|EFD56173.1| DNA polymerase [Mycobacterium tuberculosis T92] gi|289696357|gb|EFD63786.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis EAS054] gi|298496912|gb|EFI32206.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis 94_M4241A] gi|326905479|gb|EGE52412.1| DNA polymerase [Mycobacterium tuberculosis W-148] gi|328460414|gb|AEB05837.1| DNA polymerase [Mycobacterium tuberculosis KZN 4207] Length = 401 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 20/201 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA- 88 G M HA L G G G++ +A LQ + C C+ + +HA Sbjct: 36 GGTMTHAWLLTGPPGSGRSVAALCFAA-ALQCTSGGEPGCGRCRA--CTTTLA--GTHAD 90 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + + S I VDE+R I + TG+W++++I+ D + AAN Sbjct: 91 VRRVIPEGLS-----------IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAAN 139 Query: 149 ALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ALLK +EEPP +F+L + + I T+RSRC + + S + + + L + Sbjct: 140 ALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDP 199 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 D+ ++ + G V RA ++ Sbjct: 200 DTA-NWAASVSGGHVGRARRL 219 >gi|83814225|ref|YP_446655.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter ruber DSM 13855] gi|83755619|gb|ABC43732.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter ruber DSM 13855] Length = 728 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 16/186 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + E + + L R+ HA LF G +G+GK T A + + P Sbjct: 11 RKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCETP 70 Query: 63 --DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + C D C F A +L+ F + S N VD+IR +R Sbjct: 71 REEREDGAEPCCECDSCESF---EAGRSLNVFEMDAASNN----------KVDDIRELRE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +V ++D V +++ A NALLK+LEEPP LFI + +L TI SR Sbjct: 118 KVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSR 177 Query: 181 CLSIKF 186 C F Sbjct: 178 CQRFDF 183 >gi|320095387|ref|ZP_08027066.1| DNA-directed DNA polymerase III subunit delta' [Actinomyces sp. oral taxon 178 str. F0338] gi|319977658|gb|EFW09322.1| DNA-directed DNA polymerase III subunit delta' [Actinomyces sp. oral taxon 178 str. F0338] Length = 393 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 38/193 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGR-------------MHHALLFEGEQGIGKATLGF 52 D V++ L G E L + S R M HA L G G G+ ++ Sbjct: 1 MDGVFSG-LIGQEAAVAVLREAAGSARATTAAGDGEGARAMSHAWLITGPPGSGR-SVAA 58 Query: 53 RYAGHVLQNPDFSKAPVRMCNPDPCS----PFVKQMASHALHDFLYLSYSLNPKTGKWRT 108 LQ C +P P + + D ++++ + Sbjct: 59 TAFAAALQ-----------CTGEPVGCGQCPGCRTTLAKTNADVVFVATET--------S 99 Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +ITVD R + + + G WRV++++ D + + ANALLK++EEPP +++L + Sbjct: 100 IITVDTARSLVQQAQSSPSQGKWRVLVVEDADRLGESGANALLKAIEEPPAHTVWLLCAP 159 Query: 169 ASPTILSTIRSRC 181 + +++TIRSRC Sbjct: 160 SPEDMIATIRSRC 172 >gi|18309027|ref|NP_560961.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens str. 13] gi|168213992|ref|ZP_02639617.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens CPE str. F4969] gi|18143702|dbj|BAB79751.1| DNA polymerase III gamma and tau subunits [Clostridium perfringens str. 13] gi|170714512|gb|EDT26694.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens CPE str. F4969] Length = 547 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD+IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDKIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|294508590|ref|YP_003572649.1| DNA polymerase III subunit tau [Salinibacter ruber M8] gi|294344919|emb|CBH25697.1| DNA polymerase III subunit tau [Salinibacter ruber M8] Length = 759 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 16/201 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + E + + L R+ HA LF G +G+GK T A + + P Sbjct: 42 RKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCETP 101 Query: 63 --DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + C D C F A +L+ F + S N VD+IR +R Sbjct: 102 REEREDGAEPCCECDSCESF---EAGRSLNVFEMDAASNN----------KVDDIRELRE 148 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +V ++D V +++ A NALLK+LEEPP LFI + +L TI SR Sbjct: 149 KVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSR 208 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F + + + L ++ Sbjct: 209 CQRFDFRRIPVPEIVQRLREI 229 >gi|148240579|ref|YP_001225966.1| DNA polymerase III subunit delta' [Synechococcus sp. WH 7803] gi|147849118|emb|CAK24669.1| DNA polymerase III delta prime subunit [Synechococcus sp. WH 7803] Length = 324 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 27/202 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L R+ A LF G G+G+ R+ VL Sbjct: 9 LQGQPLATQVLQSALTHQRLAPAYLFSGPDGVGRRLGALRFMEGVLTG----------GG 58 Query: 74 PDPCSPFVKQMASHALHDFLY-----------LSYSLNPKTGKWRTV---ITVDEIRRIR 119 PDP + +H D L+ +S S G R + +++IR + Sbjct: 59 PDPRERRRLEERNHP--DLLWVEPTYSHQGRLISRSEAEAAGVNRRTPPQVRLEQIRDLG 116 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 FL+ +++++ + M AANALLK+LEEP L IL+S A +L+TIRS Sbjct: 117 RFLARQPLESPRGLVVLEQPEAMAEGAANALLKTLEEPGHG-LLILLSAAPDRLLTTIRS 175 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC I+F L + + L QL Sbjct: 176 RCQQIRFTRLPDAAMQTVLAQL 197 >gi|220911617|ref|YP_002486926.1| DNA polymerase III subunit delta' [Arthrobacter chlorophenolicus A6] gi|219858495|gb|ACL38837.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] Length = 387 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 13/173 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L Q + HA LF G G G++ +A + N D +R C Sbjct: 7 LQGQPAVVDQLRQASSGEGLTHAWLFTGPPGSGRSNAAKAFAAAL--NCDQEDVNLRGCG 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 HA L ++S + IT+DE R + + G WR+ Sbjct: 65 -----------QCHACLTILGETHSDVTFVRTEKVTITIDEARDLVATAGNRPSAGRWRI 113 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 I+++ D M N LLK++EEP + +++L + + +L TIRSRC S+ Sbjct: 114 IVVEDADRMAERTTNVLLKAIEEPTPRTVWMLCAPSPADVLVTIRSRCRSVAL 166 >gi|15843256|ref|NP_338293.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis CDC1551] gi|13883613|gb|AAK48107.1| DNA polymerase III, delta' subunit [Mycobacterium tuberculosis CDC1551] Length = 404 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 20/201 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA- 88 G M HA L G G G++ +A LQ + C C+ + +HA Sbjct: 39 GGTMTHAWLLTGPPGSGRSVAALCFAA-ALQCTSGGEPGCGRCRA--CTTTLA--GTHAD 93 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + + S I VDE+R I + TG+W++++I+ D + AAN Sbjct: 94 VRRVIPEGLS-----------IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAAN 142 Query: 149 ALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ALLK +EEPP +F+L + + I T+RSRC + + S + + + L + Sbjct: 143 ALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDP 202 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 D+ ++ + G V RA ++ Sbjct: 203 DTA-NWAASVSGGHVGRARRL 222 >gi|300770713|ref|ZP_07080592.1| DNA polymerase III gamma/tau subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300763189|gb|EFK60006.1| DNA polymerase III gamma/tau subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 379 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 42/248 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++I+ L + R+ HA LF G +G G L YA + + CN Sbjct: 6 IIGHQEIKDHLVRTVLENRVSHAQLFLGPEGSGSLALAHAYAQFINCEAKLADDSCGQCN 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + K +H L+ S+ K GK T +T E R + + + YWR Sbjct: 66 S--CRKYAK-----IIHPDLHFSFPFFAK-GKEETSVTYMEEWRAAFLKNPYLSLEYWRG 117 Query: 134 IMIDPVDGMNRNAA---------------------------------NALLKSLEEPPQK 160 + N N A NALLK +EEPP+K Sbjct: 118 QLEADNKQANINIAEAHDIIKKLSLKAFEAEYKILIMWLPEYLDTQGNALLKLIEEPPEK 177 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LF+L+S IL+TI SR +K L ++ L + + + + + IA G+ Sbjct: 178 TLFLLVSENQDRILNTIISRTQLVKIQKLPHQDITNYLVEERGIQKEQAGEIAFIAD-GN 236 Query: 221 VARAIKIL 228 + +A+ +L Sbjct: 237 LQQALNLL 244 >gi|123443301|ref|YP_001007275.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090262|emb|CAL13128.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 656 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITATPCGTC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRCL + + LE++ Sbjct: 162 LPVTILSRCLQFHLKVIDVEVIRAQLEKI 190 >gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO] gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO] Length = 400 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|255038674|ref|YP_003089295.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans DSM 18053] gi|254951430|gb|ACT96130.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans DSM 18053] Length = 621 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 16/192 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + PV + G I L + + A LF G +G+GK T A + N Sbjct: 9 RKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQAFLFCGPRGVGKTTCARILAKTI--NCQ 66 Query: 64 FSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 V C + C F + AS +H+ S + +V++IR + + Sbjct: 67 NLGDDVEACGECESCVSF-QNNASFNIHELDAASNN------------SVEDIRNLIDQV 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 TG +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI SRC Sbjct: 114 RYPPQTGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173 Query: 183 SIKFNSLSENNL 194 FN + ++ Sbjct: 174 IFDFNRIQSKDI 185 >gi|209554162|ref|YP_002284512.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550499|ref|ZP_03771448.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|209541663|gb|ACI59892.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379653|gb|EEH02015.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 603 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I++ L + + HA +F G +GIGK ++ +A + Sbjct: 8 RKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASI----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ N D C + + + D + L + N VD++R I Sbjct: 63 ---NCLKPNNGDCCEECSVCQSIINEQSVDLIELDAASNN---------GVDQMRNITDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID ++ +A NALLK++EEPPQ V+FI + I TI SRC Sbjct: 111 INYLPTLFKYKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE 199 FN L+ + L + ++ Sbjct: 171 QRYDFNRLNNSELQELID 188 >gi|253800684|ref|YP_003033685.1| DNA polymerase [Mycobacterium tuberculosis KZN 1435] gi|289747480|ref|ZP_06506858.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis 02_1987] gi|308232519|ref|ZP_07416334.2| DNA polymerase [Mycobacterium tuberculosis SUMu001] gi|308369179|ref|ZP_07416866.2| DNA polymerase [Mycobacterium tuberculosis SUMu002] gi|308371403|ref|ZP_07424873.2| DNA polymerase [Mycobacterium tuberculosis SUMu003] gi|308372604|ref|ZP_07429239.2| DNA polymerase [Mycobacterium tuberculosis SUMu004] gi|308372694|ref|ZP_07429539.2| DNA polymerase [Mycobacterium tuberculosis SUMu005] gi|308373965|ref|ZP_07434326.2| DNA polymerase [Mycobacterium tuberculosis SUMu006] gi|308374935|ref|ZP_07442153.2| DNA polymerase [Mycobacterium tuberculosis SUMu007] gi|308376178|ref|ZP_07437939.2| DNA polymerase [Mycobacterium tuberculosis SUMu008] gi|308378394|ref|ZP_07482437.2| DNA polymerase [Mycobacterium tuberculosis SUMu009] gi|308379566|ref|ZP_07486776.2| DNA polymerase [Mycobacterium tuberculosis SUMu010] gi|308380754|ref|ZP_07490993.2| DNA polymerase [Mycobacterium tuberculosis SUMu011] gi|308406203|ref|ZP_07495550.2| DNA polymerase [Mycobacterium tuberculosis SUMu012] gi|253322187|gb|ACT26790.1| DNA polymerase [Mycobacterium tuberculosis KZN 1435] gi|289688008|gb|EFD55496.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis 02_1987] gi|308213708|gb|EFO73107.1| DNA polymerase [Mycobacterium tuberculosis SUMu001] gi|308328462|gb|EFP17313.1| DNA polymerase [Mycobacterium tuberculosis SUMu002] gi|308328873|gb|EFP17724.1| DNA polymerase [Mycobacterium tuberculosis SUMu003] gi|308332713|gb|EFP21564.1| DNA polymerase [Mycobacterium tuberculosis SUMu004] gi|308340206|gb|EFP29057.1| DNA polymerase [Mycobacterium tuberculosis SUMu005] gi|308343492|gb|EFP32343.1| DNA polymerase [Mycobacterium tuberculosis SUMu006] gi|308347992|gb|EFP36843.1| DNA polymerase [Mycobacterium tuberculosis SUMu007] gi|308351934|gb|EFP40785.1| DNA polymerase [Mycobacterium tuberculosis SUMu008] gi|308352694|gb|EFP41545.1| DNA polymerase [Mycobacterium tuberculosis SUMu009] gi|308356568|gb|EFP45419.1| DNA polymerase [Mycobacterium tuberculosis SUMu010] gi|308360526|gb|EFP49377.1| DNA polymerase [Mycobacterium tuberculosis SUMu011] gi|308364138|gb|EFP52989.1| DNA polymerase [Mycobacterium tuberculosis SUMu012] gi|323717693|gb|EGB26894.1| DNA polymerase [Mycobacterium tuberculosis CDC1551A] Length = 402 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 20/201 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA- 88 G M HA L G G G++ +A LQ + C C+ + +HA Sbjct: 37 GGTMTHAWLLTGPPGSGRSVAALCFAA-ALQCTSGGEPGCGRCRA--CTTTLA--GTHAD 91 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + + S I VDE+R I + TG+W++++I+ D + AAN Sbjct: 92 VRRVIPEGLS-----------IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAAN 140 Query: 149 ALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ALLK +EEPP +F+L + + I T+RSRC + + S + + + L + Sbjct: 141 ALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDP 200 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 D+ ++ + G V RA ++ Sbjct: 201 DTA-NWAASVSGGHVGRARRL 220 >gi|241764587|ref|ZP_04762603.1| DNA-directed DNA polymerase [Acidovorax delafieldii 2AN] gi|241365950|gb|EER60576.1| DNA-directed DNA polymerase [Acidovorax delafieldii 2AN] Length = 209 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 19/164 (11%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA------ 88 HA L +G G+G+ LG L + ++ C S + +HA Sbjct: 26 HAWLLQGPSGLGQYALGLELVRAWLCDAPGAQGACGQCG----SCHAIDVRTHADLCVLM 81 Query: 89 -LHDFLYLSYSLNPKTG--------KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 L L + L+ K K I V+ +R F T+ G + +++ P Sbjct: 82 PEVQMLALGWPLSEKAQADIDDKKRKPSREIRVEAMRDAVEFAQRTSARGRGKAVLVYPA 141 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + MN ANALLK+LEEP V F+L S A+ +L TIRSRCL Sbjct: 142 EQMNHVTANALLKTLEEPAGDVRFVLASEAAHQLLPTIRSRCLG 185 >gi|296284716|ref|ZP_06862714.1| DNA polymerase III subunits gamma and tau [Citromicrobium bathyomarinum JL354] Length = 606 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 27/246 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ R+ HA L G +G+GK T R L Sbjct: 64 VLARKYRPQTFSQLIGQEPMVQTLANAIRRDRLAHAFLMTGVRGVGK-TSTARLIAKALN 122 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P DPC + +A D + + + + TG VD++R Sbjct: 123 CIGPDGQGGPTI----DPCGVCEPCRAIAEGRHIDVIEMDAASH--TG-------VDDVR 169 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T Sbjct: 170 EIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVT 229 Query: 177 IRSRCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---- 228 + SR + L + Q + + V AA GSV + IL Sbjct: 230 VLSRTQRFDLRRIPTERLGEHFAWVCGQEGVEAEPEALNLVAAAAEGSVRDGLSILDQAI 289 Query: 229 -HYDCD 233 H D D Sbjct: 290 AHADLD 295 >gi|118586636|ref|ZP_01544076.1| DNA-dependent DNA polymerase III, gamma/tau subunits [Oenococcus oeni ATCC BAA-1163] gi|118432951|gb|EAV39677.1| DNA-dependent DNA polymerase III, gamma/tau subunits [Oenococcus oeni ATCC BAA-1163] Length = 608 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 28/196 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I + L S ++ HA LF G +G GK ++ +A + PD Sbjct: 21 RQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREIEGIPD 80 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + D + + + N G VDEIR +R + Sbjct: 81 DTD-------------------RESFSDIIEIDAASN--NG-------VDEIRNLRDAAN 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK++EEPP +V FIL + I +TI SR Sbjct: 113 YAPIEYQFKIYIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQR 172 Query: 184 IKFNSLSENNLYKALE 199 F+ + + + K LE Sbjct: 173 FDFHRIDVDQIVKRLE 188 >gi|221195173|ref|ZP_03568229.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626] gi|221185076|gb|EEE17467.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626] Length = 723 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 14/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +++ G + + L + G++ HA LF G +G GK T+ A +L Sbjct: 8 YRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAYLFCGPRGTGKTTMARLLAKALL----CR 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 KAP ++ PD + +A+ D + + + N R I I R Y Sbjct: 64 KAPGQL--PDGTCEECQLIAAGNHPDVVEIDAASNTGVDNVREEI----ISRANY----A 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +V +ID V + A NALLK+LEEPP V FIL + +L T+ SR Sbjct: 114 PVRGKGKVYIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSRVQRFD 173 Query: 186 FNSLSENNLYKALEQL 201 F+++ + L+Q+ Sbjct: 174 FHAIGNEEMLSHLQQV 189 >gi|254283726|ref|ZP_04958694.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium NOR51-B] gi|219679929|gb|EED36278.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium NOR51-B] Length = 672 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + + L + R+HHA LF G +G+GK T+ A + Sbjct: 88 VLARKWRPGNFQEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAKCLNC 147 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C D C ++A D L + + K V++ R + Sbjct: 148 DQGVSSTPCGTC--DSC----LEIAEGRSVDLLEVDAASRTK---------VEDTRELLE 192 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP F+L + + +T+ SR Sbjct: 193 NVLYAPTRSRFKIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSR 252 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 CL ++ +L K LE+ + + + AA GS+ A+ + Sbjct: 253 CLQFNLKNMVPEEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSL 303 >gi|254366194|ref|ZP_04982238.1| hypothetical DNA polymerase [Mycobacterium tuberculosis str. Haarlem] gi|134151706|gb|EBA43751.1| hypothetical DNA polymerase [Mycobacterium tuberculosis str. Haarlem] Length = 401 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 20/201 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA- 88 G M HA L G G G++ +A LQ + C C+ + +HA Sbjct: 36 GGTMTHAWLLTGPPGSGRSVAALCFAA-ALQCTSGGEPGCGRCRA--CTTTLA--GTHAD 90 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + + S I VDE+R I + TG+W++++I+ D + AAN Sbjct: 91 VRRVIPEGLS-----------IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAAN 139 Query: 149 ALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ALLK +EEPP +F+L + + I T+RSRC + + S + + + L + Sbjct: 140 ALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDP 199 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 D+ ++ + G V RA ++ Sbjct: 200 DTG-NWAASVSGGHVGRARRL 219 >gi|84495160|ref|ZP_00994279.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649] gi|84384653|gb|EAQ00533.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649] Length = 799 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 27/232 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G E + + L Q +GR++HA LF G +G GK T R L Q P + P Sbjct: 20 VIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGK-TTSARILARCLNCEQGP--TPTPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C + A D + + + + VD+ R +R S Sbjct: 77 EC--DSCVALARGGAGTV--DVIEIDAASH---------GGVDDARDLRERASYGPAQSR 123 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID + NALLK +EEPP+ V FI + ++ TIRSR F + Sbjct: 124 YKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPEKVIGTIRSRTHHYPFRLVP 183 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 L + +E+L K+ FV A GSV ++ +L D++I+ Sbjct: 184 PGQLTEYMEKLCVSEKVAVAPGVLSFVVRAGGGSVRDSLSVL----DQLIAG 231 >gi|332160791|ref|YP_004297368.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604677|emb|CBY26175.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica Y11] gi|325665021|gb|ADZ41665.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863114|emb|CBX73244.1| DNA polymerase III subunit tau [Yersinia enterocolitica W22703] Length = 656 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + L + G++ +I +D R + Sbjct: 65 ETGITATPCGTC-----------------------ANCLEIEQGRFVDLIEIDAASRTKV 101 Query: 121 --------FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQK 161 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRCL + + LE++ Sbjct: 162 LPVTILSRCLQFHLKVIDVEVIRAQLEKI 190 >gi|284028577|ref|YP_003378508.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283807870|gb|ADB29709.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length = 389 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 27/217 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMASHALH- 90 M HA L G G G++ G +A + C + C + + A H Sbjct: 39 MTHAWLITGPPGSGRSNAGRAFAAAL------------QCANEGCGECTECRTALTGAHP 86 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + L I V EIR + +++ G W+V++++ D + AA+AL Sbjct: 87 DISLIRTEL--------LSIRVSEIRELIRRAAMSPTQGRWQVMVVEDADRLTEQAADAL 138 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK- 209 LKS+EEP + +++L + ++ TIRSRC + + + + L ++ +G D++ Sbjct: 139 LKSIEEPSPRTVWVLCAPTVEDVVPTIRSRCRLLVLRTPPVGAVAEML--VRKLGVDAEL 196 Query: 210 RDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 F AA G + RA + L D +++ + ++ +P Sbjct: 197 ASFAARAAQGHIGRA-RALARD-EEVRARRTKVLELP 231 >gi|21674424|ref|NP_662489.1| DNA polymerase III, delta subunit, putative [Chlorobium tepidum TLS] gi|21647607|gb|AAM72831.1| DNA polymerase III, delta subunit, putative [Chlorobium tepidum TLS] Length = 390 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 35/207 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF--------RYAGHV------- 58 + GHE + L + R+ HA LF G +G GK ++ F R +G++ Sbjct: 6 IVGHEPQLRVLKTALGANRLAHAYLFTGPEGSGKESVAFELAKILNCRSSGNLSGEGSCG 65 Query: 59 ----------LQNPD----FSKAPVRMCNPDPCSPFVKQMAS-----HALHDFLYLSYSL 99 L +P+ F + DP K++ AL D + Sbjct: 66 ECESCRQTDLLMHPNIEYLFPVEAALLETIDPSKKENKKLTEARERYEALLDEKRKNPFF 125 Query: 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 P + ++T +++ ++ SL G +V +I + ++ AAN LLK LEEPP Sbjct: 126 TPAMERSMGILT-EQVVMLQQKASLAPRDGGKKVFIISQAERLHPTAANKLLKLLEEPPA 184 Query: 160 KVLFILISHASPTILSTIRSRCLSIKF 186 V+FIL+S ++L TIRSRC + F Sbjct: 185 HVVFILVSSRPESVLPTIRSRCQLLNF 211 >gi|269792441|ref|YP_003317345.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100076|gb|ACZ19063.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio acidaminovorans DSM 6589] Length = 580 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 22/195 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L SGR+ HA LF G +G GK + A +L Sbjct: 7 RKYRPSRFSEISGQRGVVEALVGSLRSGRIPHAFLFSGPRGCGKTS-----AARLLAKRL 61 Query: 64 FSKAPVRMCNPDPCSPFVK----QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P + + C V Q H D + + + N ++EIR ++ Sbjct: 62 NCASPAE--DGESCGTCVNCEAIQRGGHL--DVVEIDGASN---------RGIEEIRSLK 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++L +V +ID V + A NALLK+LEEPP +V F+L + + TIRS Sbjct: 109 DQVALAPFQAPNKVYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRS 168 Query: 180 RCLSIKFNSLSENNL 194 RC+ F +S ++ Sbjct: 169 RCVHFPFQRISTEDI 183 >gi|260582279|ref|ZP_05850072.1| DNA polymerase III subunit delta' [Haemophilus influenzae NT127] gi|260094647|gb|EEW78542.1| DNA polymerase III subunit delta' [Haemophilus influenzae NT127] Length = 333 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G +L ++ K Sbjct: 16 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVESLFNALVQKIMCLAQGDK- 63 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 64 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEMVAQHAQ 110 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 111 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRC---QVW 167 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 168 NLSVPNEQTAVDWLK 182 >gi|87301809|ref|ZP_01084643.1| DNA polymerase III subunit delta [Synechococcus sp. WH 5701] gi|87283377|gb|EAQ75332.1| DNA polymerase III subunit delta [Synechococcus sp. WH 5701] Length = 319 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 29/173 (16%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH- 90 R+ A L G +G+G+ G R+ VL P +P V++ S H Sbjct: 26 RLAAAYLLTGPEGVGRRLGGLRFLEGVLAGPA-------------GAPAVRRRLSQGNHP 72 Query: 91 DFLYL--SYSLNPK------------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 D L+L +YS + + + I +++IR + FL+ A G V++I Sbjct: 73 DLLWLEPTYSHQGRLVPVSQAMAEGVSKRGLPQIRLEQIRSVGPFLARRAVAGPRPVVVI 132 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 + V+ M AAN LLK+LEE P L +L+S A +LSTIRSRC I F L Sbjct: 133 EAVELMAEGAANGLLKTLEE-PGAGLLLLLSAAPERLLSTIRSRCQQIPFRPL 184 >gi|229587366|ref|YP_002860404.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Ba4 str. 657] gi|229260150|gb|ACQ51187.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Ba4 str. 657] Length = 472 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 23/228 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + + G + K L +G + HA LF G +G GK T +A V Q+ Sbjct: 6 YRPRFFKDVVGQGENTKILLNQIRTGHIGHAYLFCGNRGSGKTTTARIFAKAVNQHNK-- 63 Query: 66 KAPVRMCNPDPC-SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 N +P + K++ + D + L + G +++IR I Sbjct: 64 -------NGEPLDNELSKKIDAGNCIDIVELDAA--SHNG-------IEDIRNIIEQAQY 107 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +RV +ID V ++ +A NA LK LEEPP+ V+FIL + + T+ SRC Sbjct: 108 APSECKYRVFIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQRF 167 Query: 185 KFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + +++ L E KI + + I A G++ AI IL Sbjct: 168 DFKRIDVTDIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISIL 215 >gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916] gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916] Length = 679 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 30/223 (13%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P++++ +L G I L S R+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRFDQLVGQNAIAATLGHALRSNRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L N S P P+PC +A+ D + + + N TG V Sbjct: 60 LARSL-NCLSSDGP----TPEPCGSCELCTTIAAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI 215 +L TI SRC F + + L L W ++++ + I Sbjct: 166 VLPTILSRCQRFDFRRIPLDALEAHLT------WIAEQEAIPI 202 >gi|30260221|ref|NP_842598.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Ames] gi|47777765|ref|YP_016633.2| DNA polymerase III subunit delta' [Bacillus anthracis str. 'Ames Ancestor'] gi|49183065|ref|YP_026317.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Sterne] gi|65317491|ref|ZP_00390450.1| COG0470: ATPase involved in DNA replication [Bacillus anthracis str. A2012] gi|165872564|ref|ZP_02217196.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0488] gi|167635050|ref|ZP_02393367.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0442] gi|167641542|ref|ZP_02399790.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0193] gi|170688935|ref|ZP_02880137.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0465] gi|170707526|ref|ZP_02897979.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0389] gi|177655331|ref|ZP_02936860.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0174] gi|190568971|ref|ZP_03021872.1| DNA polymerase III, delta prime subunit [Bacillus anthracis Tsiankovskii-I] gi|227812704|ref|YP_002812713.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. CDC 684] gi|229603483|ref|YP_002864682.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0248] gi|254682342|ref|ZP_05146203.1| DNA polymerase III subunit delta' [Bacillus anthracis str. CNEVA-9066] gi|254733567|ref|ZP_05191288.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Western North America USA6153] gi|254744665|ref|ZP_05202344.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Kruger B] gi|254756370|ref|ZP_05208399.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Vollum] gi|254762426|ref|ZP_05214268.1| DNA polymerase III subunit delta' [Bacillus anthracis str. Australia 94] gi|30253542|gb|AAP24084.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. Ames] gi|47551470|gb|AAT29108.2| DNA polymerase III, delta prime subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176992|gb|AAT52368.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. Sterne] gi|164711692|gb|EDR17237.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0488] gi|167510527|gb|EDR85925.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0193] gi|167529524|gb|EDR92274.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0442] gi|170127522|gb|EDS96396.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0389] gi|170667159|gb|EDT17920.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0465] gi|172080172|gb|EDT65265.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0174] gi|190559895|gb|EDV13879.1| DNA polymerase III, delta prime subunit [Bacillus anthracis Tsiankovskii-I] gi|227003900|gb|ACP13643.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. CDC 684] gi|229267891|gb|ACQ49528.1| DNA polymerase III, delta prime subunit [Bacillus anthracis str. A0248] Length = 327 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EGE+G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAANALLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANALLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|295101850|emb|CBK99395.1| hypothetical protein FP2_19940 [Faecalibacterium prausnitzii L2-6] Length = 319 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 22/189 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G+ ++ + S R+ H++L GE G+G A L AP Sbjct: 5 RLAGNAALKDSVRLMLNSRRLTHSVLLVGETGLGAGNAARCVAADYLYPA--GGAPAEAL 62 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV-----------DEIRRIRYF 121 C V + S +TG R I+V +++ +R Sbjct: 63 LRGECCRAVGKAGDR---------DSGRIETGVVREAISVTGMGSGGRYLVSQVKAMRTE 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T+ + R +++ V+ MN +ANALLK +EEPP+ VLF+L + + +L TIRSRC Sbjct: 114 IFNTSLSAEGRAVLLYHVERMNEESANALLKVMEEPPEGVLFLLTADSLAGVLPTIRSRC 173 Query: 182 LSIKFNSLS 190 +S +S Sbjct: 174 ISFAVAPVS 182 >gi|33866767|ref|NP_898326.1| DNA polymerase III subunit delta' [Synechococcus sp. WH 8102] gi|33639368|emb|CAE08752.1| DNA polymerase III, delta prime subunit [Synechococcus sp. WH 8102] Length = 314 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + ++++R I FL+ +++I+ V+ M AANALLK+LEEP L IL+S A Sbjct: 106 LRLEQVRSISRFLARQPVEAERGMVVIEAVEAMPEAAANALLKTLEEPGHG-LLILLSAA 164 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +LSTIRSRC I+F L++ +L + LE Sbjct: 165 PERLLSTIRSRCQLIRFLRLAQADLNRVLE 194 >gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gamma and tau [Nakamurella multipartita DSM 44233] gi|258554122|gb|ACV77064.1| DNA polymerase III, subunits gamma and tau [Nakamurella multipartita DSM 44233] Length = 743 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK T R L Sbjct: 7 RKYRPATFAEVVGQEHVTQPLRTALAAGRVNHAYLFSGPRGCGK-TSSARILARSLNC-- 63 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V PDPC P +A + G VD+ R +R Sbjct: 64 -----VHGPTPDPCGECPSCIALAPEGPGSLDVVELDAASHGG-------VDDTRDLRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ ++FI + +L+TIRSR Sbjct: 112 AFYMPAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLVFIFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F ++ + L LE+L Sbjct: 172 HHYPFRLIAPSVLRTMLERL 191 >gi|88608630|ref|YP_506266.1| hypothetical protein NSE_0377 [Neorickettsia sennetsu str. Miyayama] gi|88600799|gb|ABD46267.1| hypothetical protein NSE_0377 [Neorickettsia sennetsu str. Miyayama] Length = 266 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 48/84 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V I+RI FL+LT+N ++I+I + M AANALLK LEE Q ILI+ Sbjct: 58 IKVAHIQRIHDFLNLTSNFSNQKIIIISHFEIMTAGAANALLKVLEEGKQTATLILIARY 117 Query: 170 SPTILSTIRSRCLSIKFNSLSENN 193 I +T+RSRC + F L EN Sbjct: 118 LQQITNTVRSRCFHLYFPPLKENT 141 >gi|296127014|ref|YP_003634266.1| DNA polymerase III delta prime subunit [Brachyspira murdochii DSM 12563] gi|296018830|gb|ADG72067.1| DNA polymerase III delta prime subunit [Brachyspira murdochii DSM 12563] Length = 464 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 7/124 (5%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TVI +D +R I R+++I+ ++ M++ A N L++LEEP +FILI+ Sbjct: 216 TVIPLDTVRNIIEITYRKPRISSKRIVIIEGIELMDKRAPNIFLRTLEEPSDNNIFILIT 275 Query: 168 HASPTI----LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-AYGSVA 222 + + + +RSR + +KF+SLSEN L L +K + + ++ + + +YGSVA Sbjct: 276 SDANKLVQDGMKPLRSRMMELKFSSLSENTLRSIL--MKRLRLNEEKTVLALENSYGSVA 333 Query: 223 RAIK 226 +AIK Sbjct: 334 KAIK 337 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ G K ++ Y SGR+HHA LF G++G+GK YA +L Sbjct: 3 KVLGQTTPLKIMAGIYKSGRLHHAYLFYGDEGVGKFESALNYAKAIL 49 >gi|330428265|gb|AEC19599.1| DNA polymerase III, delta' subunit [Pusillimonas sp. T7-7] Length = 351 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+++R + + + + G WRV ++ P MN ANALLK LEEPP +F+L++ A Sbjct: 115 IKVEQLRSLHTWFNTATHRGGWRVAILYPARAMNAITANALLKVLEEPPAHTIFLLVADA 174 Query: 170 SPTILSTIRSRCLSIKFNSLSENN 193 +L T+ SRC + + S+ Sbjct: 175 PDRLLPTLVSRCRRLPLAAPSKEE 198 >gi|88812993|ref|ZP_01128236.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis Nb-231] gi|88789771|gb|EAR20895.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis Nb-231] Length = 553 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 16/202 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G E + + L +GR HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFSEMAGQEHVLRALCNGLANGRCHHAYLFAGTRGVGKTTIARVLAKCLNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + P C +++ D + + + + V++ R + Sbjct: 65 ERSGITAEPCGECT------ACREIDQGRFVDLIEVDAA---------SRTRVEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G +++ ++D V +++++ NALLK+LEEPP V F+L + + +T+ S Sbjct: 110 DNVQYAPARGRFKIYLVDEVHMLSQHSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RCL L + L ++ Sbjct: 170 RCLQFNLKRLPAGRIADYLTEI 191 >gi|330837779|ref|YP_004412420.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides DSM 17374] gi|329749682|gb|AEC03038.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides DSM 17374] Length = 623 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 19/171 (11%) Query: 32 RMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ HA LF G +G+GK + A + Q P + P +C+ K++ + Sbjct: 36 RIAHAYLFSGPRGVGKTSSARILAKALNCEQGP--TAHPCGVCS------NCKEITAGNS 87 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + + N +V++IR I+ + +++ +ID V ++ +A NA Sbjct: 88 TDVIEIDGASN---------TSVNDIRAIKDEVMFPPQKCRYKIYIIDEVHMLSTSAFNA 138 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LLK++EEPP+ ++FI + + + +TIRSRC F + + K L + Sbjct: 139 LLKTIEEPPEYIIFIFATTETQKVPATIRSRCQQFHFRLFTMETIVKLLTE 189 >gi|256827341|ref|YP_003151300.1| hypothetical protein Ccur_09200 [Cryptobacterium curtum DSM 15641] gi|256583484|gb|ACU94618.1| hypothetical protein Ccur_09200 [Cryptobacterium curtum DSM 15641] Length = 382 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V +IR I + + +ID VD MN +AANA LK+LEEPPQ V+ IL+ Sbjct: 91 VGQIRDITSDVDRAPIQAQRKAYIIDRVDLMNASAANAFLKTLEEPPQHVVLILLGRTRE 150 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY-GSVARAIK 226 +L TI SRC + F + + + Q G R V +AA GS++RAI+ Sbjct: 151 AVLPTIVSRCQVVPFRHIPAHEACGIISQN--TGVPPMRAAVALAACDGSISRAIE 204 >gi|172060850|ref|YP_001808502.1| DNA polymerase III subunit delta' [Burkholderia ambifaria MC40-6] gi|171993367|gb|ACB64286.1| DNA polymerase III, delta prime subunit [Burkholderia ambifaria MC40-6] Length = 342 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 19/164 (11%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQ---------- 83 HALL G+ GIGK A G + + P + P C C+ F + Sbjct: 22 HALLLHGQAGIGKLQFAQHLAQGFLCEAPQPNGEPCGSCAA--CTWFAQGNHPDYRIVLP 79 Query: 84 -----MASHALHDFLYL-SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 A A+ D + KT I ++++R + F + ++ G RV+++ Sbjct: 80 EVLAGEAPGAVDDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLY 139 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 P + +N A+NALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 140 PAEALNVAASNALLKTLEEPPSGVVFLLVSARIDRLLPTIISRC 183 >gi|289759799|ref|ZP_06519177.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis T85] gi|289715363|gb|EFD79375.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis T85] Length = 285 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%) Query: 30 SGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 G M HA L G G G+ A L F A + R C +H Sbjct: 36 GGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACT-------TTLAGTH 88 Query: 88 A-LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 A + + S I VDE+R I + TG+W++++I+ D + A Sbjct: 89 ADVRRVIPEGLS-----------IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGA 137 Query: 147 ANALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 ANALLK +EEPP +F+L + + I T+RSRC + + S + + + L + Sbjct: 138 ANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGL 197 Query: 205 GWDSKRDFVKIAAYGSVARAIKI 227 D+ ++ + G V RA ++ Sbjct: 198 DPDTA-NWAASVSGGHVGRARRL 219 >gi|326385522|ref|ZP_08207161.1| DNA polymerase III subunits gamma and tau [Novosphingobium nitrogenifigens DSM 19370] gi|326210061|gb|EGD60839.1| DNA polymerase III subunits gamma and tau [Novosphingobium nitrogenifigens DSM 19370] Length = 622 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRM 71 L G E + + L+ GR+ HA L G +G+GK + R L PD P Sbjct: 88 LIGQEAMVQTLANAIRRGRLAHAFLMTGIRGVGKTSTA-RLIAKALNCIGPDGQGGPTI- 145 Query: 72 CNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 DPC + +A D + + + + TG VD++R I + A + Sbjct: 146 ---DPCGVCEPCRAIAEGRHIDVIEMDAASH--TG-------VDDVREIIEAVRYAAVSA 193 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++RNA NALLK+LEEPP V F+ + + T+ SRC Sbjct: 194 RYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSRC 245 >gi|300780025|ref|ZP_07089881.1| DNA-directed DNA polymerase III gamma and tau subunits [Corynebacterium genitalium ATCC 33030] gi|300534135|gb|EFK55194.1| DNA-directed DNA polymerase III gamma and tau subunits [Corynebacterium genitalium ATCC 33030] Length = 819 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 31/206 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + LS +GR++HA LF G +G GK T R L Sbjct: 5 RKYRPGSFAEMIGQDQVTRPLSTALDNGRINHAYLFSGPRGTGK-TSSARILARSLN--- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT---------VDE 114 C P S AS SL P G +T V++ Sbjct: 61 --------CVEGPTSTPCGVCAS---------CVSLAPG-GPGNLDVTELDAASHRGVED 102 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R +R +RV ++D + R ANALLK +EEPP+ ++FI + I+ Sbjct: 103 MRALRESAMFAPAESRYRVFIVDEAHMITREGANALLKVVEEPPEHLVFIFATTEPENII 162 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQ 200 TIRSR F L+ N + LE+ Sbjct: 163 GTIRSRTHHYPFRLLTPNAMRSLLER 188 >gi|319762330|ref|YP_004126267.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] gi|330825749|ref|YP_004389052.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] gi|317116891|gb|ADU99379.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] gi|329311121|gb|AEB85536.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] Length = 331 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP V F+L + A Sbjct: 107 IRVEAMRDAVEFAQRTSARGRGKAVLVFPAEQMNHVTANALLKTLEEPPGDVRFVLATEA 166 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 167 AHELLPTIRSRCLG 180 >gi|41406525|ref|NP_959361.1| DNA polymerase III subunit delta' [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394874|gb|AAS02744.1| hypothetical protein MAP_0427 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 401 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 18/200 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A + D R HA Sbjct: 36 AGTMTHAWLITGPPGSGRSVAALCFAAALQCTADGEPGCGRC---------------HAC 80 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 L +++ + I VDE+R I + TG W++++I+ D + AANA Sbjct: 81 TTTLAGTHADVRRVVPEGLSIGVDEMRAIVQIAARRPATGNWQIVVIEDADRLTEGAANA 140 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + + T+RSRC + + S + + L + + Sbjct: 141 LLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALVTPSTEAIARVLVDSDGLTPE 200 Query: 208 SKRDFVKIAAYGSVARAIKI 227 + D+ + G V RA ++ Sbjct: 201 TA-DWAASVSGGHVGRARRL 219 >gi|227495670|ref|ZP_03925986.1| DNA polymerase III, delta prime subunit [Actinomyces coleocanis DSM 15436] gi|226830902|gb|EEH63285.1| DNA polymerase III, delta prime subunit [Actinomyces coleocanis DSM 15436] Length = 390 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 50/80 (62%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +++I+++E+R + + G WRVI+++ D M +N LLK++EEPP + +++L Sbjct: 97 KSIISIEEVRAFMHNAQSAPSQGKWRVILLEDADRMQERTSNLLLKAIEEPPARTVWVLC 156 Query: 167 SHASPTILSTIRSRCLSIKF 186 + + +++TIRSRC + Sbjct: 157 APSPEDLITTIRSRCRQVNL 176 >gi|185178753|ref|ZP_02964562.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024380|ref|ZP_02997046.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518706|ref|ZP_03004131.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524139|ref|ZP_03004211.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867490|ref|ZP_03079494.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273501|ref|ZP_03206037.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551370|ref|ZP_03772316.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209363|gb|EDU06406.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018648|gb|EDU56688.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997708|gb|EDU66805.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660025|gb|EDX53405.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660966|gb|EDX54219.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250021|gb|EDY74801.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379185|gb|EEH01550.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 603 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 19/198 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G I++ L + + HA +F G +GIGK ++ +A + Sbjct: 8 RKYRPHKFKDVIGQNLIKQALINANLNDKTTHAYIFSGPRGIGKTSIARIFAASI----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ N D C + + + D + L + N VD++R I Sbjct: 63 ---NCLKPNNGDCCGECSVCQSIINEQSVDLIELDAASNN---------GVDQMRNITDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID ++ +A NALLK++EEPPQ V+FI + I TI SRC Sbjct: 111 INYLPTLFKYKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE 199 FN L+ + L + ++ Sbjct: 171 QRYDFNRLNNSELQELID 188 >gi|120406477|ref|YP_956306.1| DNA polymerase III subunits gamma and tau [Mycobacterium vanbaalenii PYR-1] gi|119959295|gb|ABM16300.1| DNA polymerase III, tau subunit [Mycobacterium vanbaalenii PYR-1] Length = 643 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 19/222 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LS SGR++HA LF G +G GK T R L + Sbjct: 5 RKYRPATFADVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGK-TSSARILARSLNCAE 63 Query: 64 FSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A P +C D C + D + L + + VD+ R +R Sbjct: 64 GPTATPCGVC--DSCVALAPNGPGNV--DVVELDAASH---------GGVDDTRELRDRA 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +R+ ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 111 FYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTH 170 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 F L+ + +E KI+ +S R V A Y V RA Sbjct: 171 HYPFRLLAPKTMRTLIE--KIVASESVR--VDDAVYPLVIRA 208 >gi|168206163|ref|ZP_02632168.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens E str. JGS1987] gi|170662345|gb|EDT15028.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens E str. JGS1987] Length = 547 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CC9311] gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. CC9311] Length = 643 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 32/224 (14%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--F 52 + +A+ P++++ +L G E I L SGR+ A LF G +G GK + Sbjct: 1 MSQAYQPLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARIL 60 Query: 53 RYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 + + L + + P C +A D + + + N TG V Sbjct: 61 ARSLNCLSHDGPTPQPCGTCE------LCNTIARGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKI-MGWDSKRDFVKI 215 +L TI SRC F + LE L + W ++++ + I Sbjct: 166 VLPTILSRCQRFDFRRIP-------LEALNSHLAWIAEQESIPI 202 >gi|110803673|ref|YP_697397.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens SM101] gi|110684174|gb|ABG87544.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens SM101] Length = 547 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|310639491|ref|YP_003944249.1| DNA polymerase iii, delta prime subunit [Paenibacillus polymyxa SC2] gi|309244440|gb|ADO54007.1| DNA polymerase III, delta prime subunit [Paenibacillus polymyxa SC2] Length = 331 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G + +K L + + HA +F G QG G+ + +A + Sbjct: 4 QHILGQDVAKKMLQSALRNHTVSHAYVFSGPQGSGQMNMAQTFAKALFCEKQ-------- 55 Query: 72 CNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C + + H H L++ + P I +D+IR ++ S + + Sbjct: 56 -TDDACGECLSCRKVEHGNHPDLHI---VEPDGA----TIKIDQIRGLQRIFSYKSESSN 107 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +I D M AAN+LLK LEEP V+ ILIS +L TI+SR + F++L Sbjct: 108 PKVYIIRQADTMTVQAANSLLKFLEEPQIPVVGILISENGQALLPTIQSRTQQVPFHALQ 167 Query: 191 ENNLYKAL 198 + +AL Sbjct: 168 PEMMMQAL 175 >gi|83588916|ref|YP_428925.1| DNA-directed DNA polymerase [Moorella thermoacetica ATCC 39073] gi|83571830|gb|ABC18382.1| DNA-directed DNA polymerase [Moorella thermoacetica ATCC 39073] Length = 284 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 30/173 (17%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGK--------ATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 L Q +G++ HA L G G+ L RY LQ + P C+ Sbjct: 7 LKQALLAGKLAHAYLLVGGSEEGRRAEAIYLATALNCRY----LQGGE----PCGSCH-- 56 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 +QMA DF Y L P+ T + + +IR + L+L A G +V + Sbjct: 57 ----SCRQMAGGNHPDF----YLLEPRG----TNLKIAQIRELEARLALQAFQGGVKVAV 104 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 + D M AAN LLK+LEEPP+ IL++ +L TIRSRC I Sbjct: 105 LAGADTMTEAAANCLLKTLEEPPEGTYLILLAAQPDPLLPTIRSRCQEIHLEG 157 >gi|264677747|ref|YP_003277653.1| DNA-directed DNA polymerase [Comamonas testosteroni CNB-2] gi|262208259|gb|ACY32357.1| DNA-directed DNA polymerase [Comamonas testosteroni CNB-2] Length = 341 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP F+L S A Sbjct: 110 IRVEAMRDAVEFCQRTSARGRGKAVLVYPAEQMNAITANALLKTLEEPPGDTRFVLASEA 169 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL+ Sbjct: 170 AHQLLPTIRSRCLT 183 >gi|152993623|ref|YP_001359344.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1] gi|151425484|dbj|BAF72987.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1] Length = 666 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + + + LS R+ HA LF G +G GK + +A +L Sbjct: 7 RKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAKALLCEQG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C C MA+ H D + + + N +D+I+ + Sbjct: 67 TTSHPCGTCTH--CV-----MAAENRHMDIIEMDAASNRG---------IDDIKDLIEHT 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++ +++ +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 111 KYKPSSARYKIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQ 170 Query: 183 SIKFNSLSENNLYKALEQL 201 +F + +N + LE + Sbjct: 171 HFRFKKIPQNLVLSHLEHI 189 >gi|319944209|ref|ZP_08018485.1| DNA polymerase III [Lautropia mirabilis ATCC 51599] gi|319742504|gb|EFV94915.1| DNA polymerase III [Lautropia mirabilis ATCC 51599] Length = 773 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 19/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L + R+HHA L G +G+GK T+ A + S P C+ Sbjct: 25 LVGQDTVVRALRHALDNQRLHHAYLLTGTRGVGKTTIARILAKALNCEKGVSSHPCGECS 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + D+L + + N K V+E+ + + G ++V Sbjct: 85 ------ACRGVDEGRFPDYLEMDAASNRK---------VEEMAVVLENAAYLPTVGRYKV 129 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE-- 191 +ID V ++ +A NA+LK+LEEPP V+F+L + + T+ SRC+ ++S Sbjct: 130 FVIDEVHMLSTHAFNAMLKTLEEPPPHVIFVLATTDPQKVPVTVLSRCMQFGLRNVSPAT 189 Query: 192 --NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L L+ I + + + AA GS+ + +L Sbjct: 190 VAGHLANVLQAEDIPYEERSLELIGKAAGGSMRDGLSLL 228 >gi|168210522|ref|ZP_02636147.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens B str. ATCC 3626] gi|168217757|ref|ZP_02643382.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens NCTC 8239] gi|170711454|gb|EDT23636.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens B str. ATCC 3626] gi|182380192|gb|EDT77671.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens NCTC 8239] Length = 547 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|182625401|ref|ZP_02953174.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D str. JGS1721] gi|177909398|gb|EDT71850.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D str. JGS1721] Length = 547 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|110799164|ref|YP_694518.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens ATCC 13124] gi|110673811|gb|ABG82798.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens ATCC 13124] Length = 547 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R HA LF G +G GK + + L D Sbjct: 8 REWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D L + N VD IR I Sbjct: 67 LK-------DGEPCNQCEMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +S + L K + + I D D V + G++ ++ IL Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL 221 >gi|311744560|ref|ZP_07718360.1| DNA-directed DNA polymerase III subunit delta' [Aeromicrobium marinum DSM 15272] gi|311312179|gb|EFQ82096.1| DNA-directed DNA polymerase III subunit delta' [Aeromicrobium marinum DSM 15272] Length = 379 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Query: 14 LFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + LS+ G M HA LF G G G++ L + + C Sbjct: 7 LVGQEPVVDLLSRVVAEPGAMTHAWLFTGPPGSGRSN-------AALAFAAALQCELGGC 59 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 CS V A + + L+ I VD R + +L + G W+ Sbjct: 60 GA--CSSCVSAAAGSHPDIAVVSTDGLS---------IGVDIARDVVRRSALHSALGRWQ 108 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V++++ D + AANALLK++EEP + +++L + A ++ TIRSRC ++ + S + Sbjct: 109 VLVVEDADRLTDQAANALLKAIEEPAPRTVWMLCAPAVEDVIVTIRSRCRAVLLRTPSTS 168 Query: 193 NLYKAL 198 + + L Sbjct: 169 AISRLL 174 >gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] Length = 581 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|156744191|ref|YP_001434320.1| DNA polymerase III subunit delta' [Roseiflexus castenholzii DSM 13941] gi|156235519|gb|ABU60302.1| DNA polymerase III, delta prime subunit [Roseiflexus castenholzii DSM 13941] Length = 354 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 N + GHE +FL + R+ HA L G +G+GKA L R A N + S Sbjct: 7 NWGMIGHEWAVEFLRRSIAGKRLAHAYLIGGPEGVGKALLALRLA--QALNCERSAL--- 61 Query: 71 MCNPDPC-SPFVKQMASHALHDFLYLSYSLNPKTGK------WRTVITVDEIRRIRYFLS 123 DPC Q H + ++ G + + +D +R + + Sbjct: 62 ----DPCLRCRACQRIERGNHPDVRIAGMATQAAGAKSDDAARQKELKIDTVREWQRDMM 117 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L G RV ++ + +N +A+NA+LK+LEEPP +L++H ++L TI SRC Sbjct: 118 LKPYEGRRRVFILHDAEKLNESASNAMLKTLEEPPPYATIVLVAHTVGSLLPTIVSRCQL 177 Query: 184 IKFNSLSENNLYKALEQ 200 ++ L + AL + Sbjct: 178 LRLRPLPRAQVAAALRE 194 >gi|221068067|ref|ZP_03544172.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] gi|220713090|gb|EED68458.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] Length = 341 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEPP F+L S A Sbjct: 110 IRVEAMRDAVEFCQRTSARGRGKAVLVYPAEQMNAITANALLKTLEEPPGDTRFVLASEA 169 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL+ Sbjct: 170 AHQLLPTIRSRCLT 183 >gi|222825111|dbj|BAH22268.1| putative DNA polymerase III, gamma/tau subunits [Wolbachia endosymbiont of Cadra cautella] Length = 283 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I V+++R ++ FL L+ +++ +ID ++ M NA NA+LK LEEPPQ ++ISH Sbjct: 63 TIGVEKVREMKNFLYLSPIQSEYKIAIIDSLEAMTSNAKNAILKILEEPPQNSKILIISH 122 Query: 169 ASPTILSTIRSRCLSIKF 186 I +TIR RC + Sbjct: 123 KPYDIQTTIRCRCFQLNL 140 >gi|58584896|ref|YP_198469.1| ATPase involved in DNA replication, HolB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419212|gb|AAW71227.1| ATPase involved in DNA replication, HolB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 278 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 36/179 (20%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 ++L GH+ ++ L + L G++GIGKATL ++ +L V+ Sbjct: 2 KKLIGHDQAKRKLMDNLSV----QSWLICGKKGIGKATLTKFFSNWLL---------VKN 48 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C+ ++ L+ G I V+ +R ++ FL L+ + Sbjct: 49 CDE--------------------VALDLHIVEGD---TIGVERVREMKNFLHLSPIQSEY 85 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ +ID ++ M NA NA+LK LEEPP+ +ISH I +TI+ RC + SL+ Sbjct: 86 KIAIIDSLEAMTNNARNAILKVLEEPPKNSKIFIISHRPYNIQTTIQCRCFQLNLLSLT 144 >gi|313888954|ref|ZP_07822614.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845127|gb|EFR32528.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei ACS-146-V-Sch2b] Length = 577 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 31/241 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L+G E + L + + HA +F+G +G GK + A +L PV Sbjct: 16 ELYGQEAVVASLKNQVKNNEISHAYIFQGTRGTGKTS-----AAKILSRAVNCLHPV--- 67 Query: 73 NPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ K++ + ++ D + + + N VD+IR ++ + Sbjct: 68 DGNPCNECENCKRILNESVLDVVEMDAASNN---------GVDDIRDLKDKVIYPPQALK 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V +++ A NALLK LEEPP+ ++FIL + I +TI SR F +S Sbjct: 119 YKVYIIDEVHMLSKGAFNALLKILEEPPRHLIFILATTEIEKIPATILSRSQKFNFKRIS 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLIH 244 E+NL K + +L+ D + F IA A G++ A+ +L D++I+ D I Sbjct: 179 VEDIESNL-KRITELEGKSCDEEV-FTLIAKTADGAMRDALSVL----DQLITKNKDHIR 232 Query: 245 I 245 + Sbjct: 233 L 233 >gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|258615716|ref|ZP_05713486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecium DO] gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] Length = 581 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|218755422|ref|ZP_03534218.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis GM 1503] gi|289763821|ref|ZP_06523199.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis GM 1503] gi|289711327|gb|EFD75343.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis GM 1503] Length = 354 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R I + TG+W++++I+ D + AANALLK +EEPP +F+L + + Sbjct: 54 IGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPS 113 Query: 170 --SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 I T+RSRC + + S + + + L + D+ ++ + G V RA ++ Sbjct: 114 VDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTA-NWAASVSGGHVGRARRL 172 >gi|94969002|ref|YP_591050.1| DNA polymerase III, subunits gamma and tau [Candidatus Koribacter versatilis Ellin345] gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis Ellin345] Length = 632 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 23/235 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + G + + + L R+ H +F G +GIGK T+ R L Sbjct: 5 VLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIA-RILAMALN 63 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 Q+ D P +C D C K++ + D + + + N +DEIR Sbjct: 64 CQSADHPVSEPCGVC--DSC----KEVKAGQSVDVIEIDAATN---------RGIDEIRE 108 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R +++ ++D + A NALLK+LEEPP ++F++ + I TI Sbjct: 109 LREAARYRPARDRFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTI 168 Query: 178 RSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 RSRC F+++ +++ L + I D + A GS+ A+ I+ Sbjct: 169 RSRCQHFSFHAVKFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIM 223 >gi|67459499|ref|YP_247123.1| DNA polymerase III subunit delta' [Rickettsia felis URRWXCal2] gi|67005032|gb|AAY61958.1| DNA polymerase III delta subunit [Rickettsia felis URRWXCal2] Length = 264 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 52/79 (65%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I D MN NAAN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQDFLSKTSAISGYKVAVIYAADLMNLNAANSCLKILEDAPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNS 188 + +I+STIRSRC I +S Sbjct: 130 AASIISTIRSRCFKINVSS 148 >gi|330889897|gb|EGH22558.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. mori str. 301020] Length = 711 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 S R+HHA LF G +G+GK T+ A + + P C+ K++ Sbjct: 8 SQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTCS------VCKEIDEGRF 61 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + K V++ R + + + G ++V +ID V ++ ++ NA Sbjct: 62 VDLIEIDAPSRTK---------VEDTRELLDNVQYAPSRGRFKVYLIDEVHMLSSHSFNA 112 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LLK+LEEPP V FIL + + +TI SRCL +++ + + L Sbjct: 113 LLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTPERVVEHL 161 >gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15] gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15] Length = 581 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECKMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] Length = 763 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DEIR +R + Sbjct: 68 PTDHPCNECS------VCKSILSGQSMDVLEIDAASNRG---------IDEIRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALE 199 F ++ +++ + L+ Sbjct: 173 YTFRRITSDDIAQRLQ 188 >gi|290890959|ref|ZP_06554023.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429] gi|290479358|gb|EFD88018.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429] Length = 594 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 28/196 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I + L S ++ HA LF G +G GK ++ +A + PD Sbjct: 7 RQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREIEGIPD 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + D + + + N G VDEIR +R + Sbjct: 67 DNN-------------------RESFSDIIEIDAASN--NG-------VDEIRNLRDAAN 98 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK++EEPP +V FIL + I +TI SR Sbjct: 99 YAPIEYQFKIYIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQR 158 Query: 184 IKFNSLSENNLYKALE 199 F+ + + + K LE Sbjct: 159 FDFHRIDVDQIVKRLE 174 >gi|212712811|ref|ZP_03320939.1| hypothetical protein PROVALCAL_03908 [Providencia alcalifaciens DSM 30120] gi|212684503|gb|EEB44031.1| hypothetical protein PROVALCAL_03908 [Providencia alcalifaciens DSM 30120] Length = 330 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 14/157 (8%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL +G G L + + ++ QN D K+ C+ + M + Sbjct: 18 YQAGRGHHALLIHSMKGNGADALSYGISRWLICQNRDGLKS-CGECHS------CRLMLA 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D+ L + K + I+VD +R++ LS A +V+ I + A Sbjct: 71 GTHPDYHVL------EVEKGKATISVDAVRKLTETLSGHAQQSGAKVVSIPNAQALTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ANALLK+LEEP + F+L ++L+T+RSRCL+ Sbjct: 125 ANALLKTLEEPSSQTYFLLGCEKIESMLATLRSRCLT 161 >gi|23308782|ref|NP_599495.2| DNA polymerase III subunits gamma and tau [Corynebacterium glutamicum ATCC 13032] gi|62389140|ref|YP_224542.1| DNA polymerase III subunits gamma and tau [Corynebacterium glutamicum ATCC 13032] gi|21323006|dbj|BAB97635.1| DNA polymerase III, gamma/tau subunits [Corynebacterium glutamicum ATCC 13032] gi|41324473|emb|CAF18813.1| DNA POLYMERASE III GAMMA AND TAU SUBUNITS [Corynebacterium glutamicum ATCC 13032] Length = 775 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 17/196 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P L G + LS SGR++HA LF G +G GK + + + ++ P Sbjct: 7 YRPASFGELVGQSQVTDPLSAALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGP- 65 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +CN S D L + N VD++R +R + Sbjct: 66 -TSTPCGVCN----SCVALAPGGPGTLDVTELDAASN---------NGVDDMRELRERAN 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +RV +ID ++ NALLK +EEPP ++FI + ++ TIRSR + Sbjct: 112 YAPAESRYRVFIIDEAHMISTQGFNALLKIVEEPPAHLIFIFATTEPDKMIGTIRSRTHN 171 Query: 184 IKFNSLSENNLYKALE 199 F L+ ++ K L+ Sbjct: 172 YPFRLLTPGDMRKVLK 187 >gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] Length = 581 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|261346038|ref|ZP_05973682.1| DNA polymerase III, delta' subunit [Providencia rustigianii DSM 4541] gi|282565925|gb|EFB71460.1| DNA polymerase III, delta' subunit [Providencia rustigianii DSM 4541] Length = 330 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL G G L + + ++ QN D K+ C+ + M + Sbjct: 18 YQAGRGHHALLIHSIAGNGADALSYGMSRWLICQNKDGLKS-CGECHS------CRLMLA 70 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D+ + L+ + GK + I++D +R++ LS A +V+ I + A Sbjct: 71 GTHPDY----HVLDVEKGK--STISIDAVRKLTETLSGHAQQNGAKVVAIPNGQALTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ANALLK+LEEP ++ F+L +L+T+RSRCL+ Sbjct: 125 ANALLKTLEEPSKQTYFLLGCEKPENLLATLRSRCLT 161 >gi|224369773|ref|YP_002603937.1| HolB [Desulfobacterium autotrophicum HRM2] gi|223692490|gb|ACN15773.1| HolB [Desulfobacterium autotrophicum HRM2] Length = 345 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G ++ + L + ++ +ALLF G +GK +A L + C D Sbjct: 15 GGVNLPQDLVALLATLKIPNALLFVGNPDLGKVETALAFA-RALNCQGEKRNDGLAC--D 71 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C K ++S +H + + + I + +IR I + + +R+++ Sbjct: 72 QCRSCKKILSS--MHPDIICVAPVKER-------IKISQIREIYGQIKAKPHEAKFRMVL 122 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I + MN A+NALLK LEEPP++ FIL + + +L TI SRC + F+ + + + Sbjct: 123 IQGAEAMNPEASNALLKILEEPPERTFFILTTERTDGLLPTILSRCRQVTFSPMDQGKIE 182 Query: 196 KALEQLKIMGWDSKRDFVKIA-AYGSVARAIK 226 + L ++ G D+ + + + GS+ +A+K Sbjct: 183 QIL--VRDHGIDTTTAGIAASWSQGSLQKALK 212 >gi|291005087|ref|ZP_06563060.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] Length = 529 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 33/229 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 ++ P DPC +A L P+ G V+ VD+ Sbjct: 63 CAQGPTA----DPCGECDSCVA-------------LAPEGGGSVDVVELDAASHGGVDDT 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +R+ +ID + NALLK +EEPP+ ++F+ + +L+ Sbjct: 106 RELRDRAFFAPAQSRYRIFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLT 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 TIRSR F + + + LE++ D + V+ A Y V RA Sbjct: 166 TIRSRTHHYPFRLMPPGVMRELLERI----CDQESVRVEPAVYPLVLRA 210 >gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] Length = 581 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + + L S + HA LF G +G GK + +A + N SK + Sbjct: 18 IVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI--NCPNSK------D 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTKAAY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALE 199 ++ + LE Sbjct: 181 ADIVEHLE 188 >gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica HM-1:IMSS] gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica HM-1:IMSS] Length = 325 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 49/269 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +FGHE I + L Q+ + ++ H +LF G G GK T Sbjct: 9 YRPSTTDGIFGHEYILESLKQFINANQIPH-MLFYGPPGTGKTTTAL------------- 54 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 VKQ+ F L LN + +D +R +I+ F S Sbjct: 55 -------------AIVKQLCGT---KFSALVLELNASDERG-----IDVVRDQIKSFAST 93 Query: 125 -TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T T + I++D D + ++A NAL ++LE+ FI I + I I+SRC Sbjct: 94 RTLYTNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAK 153 Query: 184 IKFNSLSENNLYKALEQLKI-----MGWDSKRDFVKIAAYG--SVARAIKILHYDCDKII 236 ++F LS + L K +E + + + D+K+ ++I+ S+ ++ L C +I Sbjct: 154 MRFGPLSPDALTKIVENITMKEGMEIDEDAKKSIIEISKGDARSIINTLQALSMTCKQIT 213 Query: 237 SSYI-DLIHIPRQEYALQKMQQIADELLS 264 +S + ++ +P ++ I ELLS Sbjct: 214 NSTLYTMVGLPTPA----QIDDIISELLS 238 >gi|288921144|ref|ZP_06415432.1| DNA polymerase III, delta prime subunit [Frankia sp. EUN1f] gi|288347453|gb|EFC81742.1| DNA polymerase III, delta prime subunit [Frankia sp. EUN1f] Length = 423 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 48/77 (62%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V ++R + + + G WR+++ID D +AANALLK+LEEP ++ +F+L + + Sbjct: 107 IGVRDVRALIRDAASAPSAGSWRILLIDDADRFTDSAANALLKALEEPAERAVFLLCAPS 166 Query: 170 SPTILSTIRSRCLSIKF 186 +L TIRSRC S+ Sbjct: 167 VDDVLPTIRSRCRSVAL 183 >gi|157146203|ref|YP_001453522.1| DNA polymerase III subunit delta' [Citrobacter koseri ATCC BAA-895] gi|157083408|gb|ABV13086.1| hypothetical protein CKO_01959 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPEGHKSCGRCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ YSL P+ GK + + VD +R + L + G +V+ Sbjct: 67 -----LMQAGTHP--DY----YSLLPEKGK--STLGVDAVRDVGEKLYEHSRLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 114 IPDAALLTDAAANALLKTLEEPPEQTWFFLASREPARLLATLRSRC 159 >gi|209965591|ref|YP_002298506.1| DNA polymerase III subunits gamma and tau [Rhodospirillum centenum SW] gi|209959057|gb|ACI99693.1| DNA polymerase III, subunits gamma and tau, putative [Rhodospirillum centenum SW] Length = 640 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 110/282 (39%), Gaps = 38/282 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L SGR+H A + G +G+GK T R L Sbjct: 25 VLARKYRPQSFDELVGQDALVRTLRNAIQSGRIHQAYMLTGVRGVGKTTTA-RIIARALN 83 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P P + +A+ D L + + N TG VD IR I Sbjct: 84 CVGPDGKGGPT--ITPCGVCEQCRSIAADRNVDVLEMDAASN--TG-------VDNIREI 132 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + +++ +ID V +++ A NALLK+LEEPP V F+ + + T+ Sbjct: 133 IDGVRYAPAAARYKLYIIDEVHMLSKGAFNALLKTLEEPPPHVKFVFATTEIRKVPITVL 192 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV---ARAIKILHYDCDKI 235 SRC + + L F +IA V A AI ++ D Sbjct: 193 SRCQRFDLRRVDQGTLVG--------------HFTRIAGKEGVEADAEAISLIARAADGS 238 Query: 236 ISSYIDLIHIPRQEYALQK----MQQIADELLSQDQKIAFDF 273 + + L+ Q AL +Q+ D L D+ + D Sbjct: 239 VRDGLSLLD---QAIALGSGRVTAEQVRDMLGLADRGLIVDL 277 >gi|296390101|ref|ZP_06879576.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PAb1] Length = 453 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + S P C+ Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTPCGECS 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 61 ------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLDNVQYSPTRGRYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V F+L + + TI SRCL ++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPPER 165 Query: 194 LYKAL 198 + + L Sbjct: 166 VVEHL 170 >gi|157964239|ref|YP_001499063.1| DNA polymerase III subunit delta' [Rickettsia massiliae MTU5] gi|157844015|gb|ABV84516.1| DNA polymerase III delta subunit [Rickettsia massiliae MTU5] Length = 270 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I D MN NAAN+ LK LE+ P+ LI+ Sbjct: 76 ISIEQIRKLQDFLSKTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSR 135 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ 200 + +I+STIRSRC I S ++N LY Q Sbjct: 136 AASIISTIRSRCFKINVRSSINHTKNELYSEFIQ 169 >gi|282901979|ref|ZP_06309877.1| DNA polymerase III delta prime subunit [Cylindrospermopsis raciborskii CS-505] gi|281193066|gb|EFA68065.1| DNA polymerase III delta prime subunit [Cylindrospermopsis raciborskii CS-505] Length = 313 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 12/274 (4%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT-----LGFRYAGHVLQNPDFSK 66 + L G + + L+ R+ A LF G+ G+G++ + +AG + S Sbjct: 3 EELIGQQQAIELLTASVKQNRIAPAYLFAGKDGVGRSLAATCFIQLLFAGS-RDGEELSV 61 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLSLT 125 R+ + F + + L + + K K VI +++IR I FLS Sbjct: 62 LKNRVSQRNHPDLFWVEPTYQYQGERLTAAQAAEKKVKRKAPPVIRLEQIREISQFLSRP 121 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 V++I+ + M +AANALLK+LEEP + L ILI + +IL T+ SRC I Sbjct: 122 PLESVRSVVVIEQAEAMAESAANALLKTLEEPGRATL-ILIVPSPESILPTLVSRCQKIP 180 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 F L ++L + L + + + + +AA GS AI + H I S + + Sbjct: 181 FYRLDSSSLTQVLTRTGNLEILEHPEILNLAA-GSPGSAI-LAHQQLQSINSELLQEVKK 238 Query: 246 PRQEY--ALQKMQQIADELLSQDQKIAFDFLIEF 277 Y AL+ ++I EL ++ Q ++L ++ Sbjct: 239 LPTSYLHALELGKRIDRELDTEGQLWLIEYLQQY 272 >gi|114568986|ref|YP_755666.1| DNA polymerase III subunits gamma and tau [Maricaulis maris MCS10] gi|114339448|gb|ABI64728.1| DNA polymerase III, tau subunit [Maricaulis maris MCS10] Length = 606 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 29/239 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 34 VLARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARALNF 93 Query: 61 NPDFSKAPV-------RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 D AP R C+ S V M A +TG V Sbjct: 94 QTDGIDAPSMALGEKGRHCDAIGRSAHVDVMEMDAAS-----------RTG-------VG 135 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR I + + ++V +ID V ++ +A NALLK+LEEPP+ FI + + Sbjct: 136 DIREILEGVRYAPVSARYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKV 195 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKIL 228 T+ SRC + L L+++ + G +RD + + AA GSV A+ +L Sbjct: 196 PVTVLSRCQRFDLKRIDREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLL 254 >gi|256826358|ref|YP_003150318.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] gi|256689751|gb|ACV07553.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] Length = 796 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 103/245 (42%), Gaps = 27/245 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + L Q +GR++HA LF G +G GK T R L Q Sbjct: 7 RRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAYLFSGPRGCGK-TTSARILARCLNCEQ 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + +P C D C + A D + + + + VD+ R +R Sbjct: 66 GP--TDSPCGEC--DSCQDLARGGAGSV--DVIEIDAASH---------GGVDDARDLRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S ++V +ID + NALLK +EEPP+ VLFI + ++ TIRSR Sbjct: 111 KASFGPAQSRYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSR 170 Query: 181 CLSIKFN----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 F ++ + L + E+ I +V A GSV ++ +L D++I Sbjct: 171 THHYPFRLVPPAVLQEYLAQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVL----DQLI 226 Query: 237 SSYID 241 + D Sbjct: 227 AGSDD 231 >gi|157826673|ref|YP_001495737.1| DNA polymerase III subunit delta' [Rickettsia bellii OSU 85-389] gi|157801977|gb|ABV78700.1| DNA polymerase III subunit delta' [Rickettsia bellii OSU 85-389] Length = 266 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ +V +I D MN NAAN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQEFLSKTSAISGCKVAVIYSADLMNLNAANSCLKILEDTPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ--LKIMGWDSKRDFVK 214 + +I+STIRSRC I S SE LY Q +SK +F+K Sbjct: 130 ASSIISTIRSRCFKISTKSSERHSEEELYSKFIQPIADNENLNSKLEFIK 179 >gi|295837411|ref|ZP_06824344.1| DNA polymerase III, delta' subunit [Streptomyces sp. SPB74] gi|197696073|gb|EDY43006.1| DNA polymerase III, delta' subunit [Streptomyces sp. SPB74] Length = 401 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 29/200 (14%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ-----MAS 86 RM HA LF G G G+A +A LQ +P R +P F + + + Sbjct: 42 RMTHAWLFTGPPGSGRAEAARAFA-AALQ----CVSPDRALGGEPGCGFCEGCHTALIGT 96 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA +F+ I V E R + L+ TG W+VI+++ D + A Sbjct: 97 HADVEFVRTDL----------LSIGVKETRDLVRRAQLSPATGRWQVIVLEDADRLTEGA 146 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 N LLK++EEP + +++L + + +L TIRSRC + + +A+ L + Sbjct: 147 GNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLSLRTPP----VEAVADLLV--- 199 Query: 207 DSKRDFVKIAAYGSVARAIK 226 +RD V A SVARA + Sbjct: 200 --RRDGVDPALAASVARATQ 217 >gi|148827650|ref|YP_001292403.1| DNA polymerase III subunit delta' [Haemophilus influenzae PittGG] gi|148718892|gb|ABR00020.1| DNA polymerase III subunit delta [Haemophilus influenzae PittGG] Length = 326 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G L ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADSGLGVERLFDALTQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRNINEMVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 162 NLSVPNEQMAVDWLK 176 >gi|317407093|gb|EFV87101.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 205 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N +ANALLK LEEPP +F+L++ A Sbjct: 115 IRIDQIRSLESWFNTATHRGGWRVALLYPAHALNVVSANALLKVLEEPPPHTVFLLVADA 174 Query: 170 SPTILSTIRSRC 181 +L T+ SRC Sbjct: 175 PDRLLPTLVSRC 186 >gi|300933818|ref|ZP_07149074.1| DNA polymerase III subunits gamma and tau [Corynebacterium resistens DSM 45100] Length = 895 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G + + LS SGR++HA LF G +G GK T R L + Sbjct: 5 RKYRPSTFAEVVGQAHVTEPLSTALDSGRINHAYLFSGPRGCGK-TSSARIMARSLNCVE 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C D C A H D + + T V+++R +R Sbjct: 64 GP--TSTPCGKC--DSCLALGPGGAGHL--DVTEIDAA---------THNGVEDMRELRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RVI+ID ++++ NALLK +EEPP+ ++FI + +L+TIRSR Sbjct: 109 RAFFAPAESRYRVIIIDEAHMISQSGFNALLKIVEEPPEHLIFIFATTEPEKMLATIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 + F L+ ++ LE + Sbjct: 169 THNYPFRLLTPPDMRGLLESV 189 >gi|260219489|emb|CBA26334.1| hypothetical protein Csp_E34220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 273 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 9/116 (7%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD +R F T+ G +V+++ P + MN ANALLK+LEEP V F+L S + Sbjct: 44 IRVDAMREAVEFAQRTSARGRGKVVLVFPAEDMNHITANALLKTLEEPVGDVRFVLASES 103 Query: 170 SPTILSTIRSRCL--SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 + +L TIRSRC+ ++++ S E + + + L RD + +A S R Sbjct: 104 AHQLLPTIRSRCIAHTMEWPSPDEASDWLVAQGL-------SRDVIPLALQASGGR 152 >gi|83859372|ref|ZP_00952893.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii HTCC2633] gi|83852819|gb|EAP90672.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii HTCC2633] Length = 586 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 25/185 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L+ + SGR+ HA + G +G+GK T Y Sbjct: 40 RKYRPQTFDDLIGQEPMVRTLTNAFASGRIAHAYMMTGVRGVGKTTTARLIARALNYETD 99 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P P R C+ +A A D + + + +TG + +IR Sbjct: 100 EVHQPSIRLTPPGRHCD---------AIARSAHVDVMEMDAAS--RTG-------ISDIR 141 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ +A NALLK+LEEPP+ V FI + + T Sbjct: 142 EILDGVRYAPVSARYKVYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVT 201 Query: 177 IRSRC 181 + SRC Sbjct: 202 VLSRC 206 >gi|88607446|ref|YP_505851.1| DNA polymerase III, subunits gamma and tau [Anaplasma phagocytophilum HZ] gi|88598509|gb|ABD43979.1| DNA polymerase III, subunits gamma and tau [Anaplasma phagocytophilum HZ] Length = 456 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 79/317 (24%), Positives = 131/317 (41%), Gaps = 44/317 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L + G ++ LL G G+GK T R L C Sbjct: 15 LVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCA-RIVSLCLN-----------CE 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYW 131 P S A+ + S NP + +VD+IR I + + + Sbjct: 63 NGPTSSPCGTCATCT-----SIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRF 117 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ +A NALLK+LE P Q FI+ + + T+ SRCL + L Sbjct: 118 KVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPI 177 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE-- 249 LY L VKI+A ++A L + S + + + Q Sbjct: 178 KQLYDHL--------------VKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALI 223 Query: 250 YALQK--MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG--QLEEADQIAQIY 305 Y+ K +Q++ + L D+KI +E I+++I S +A+ G +L A I+ Sbjct: 224 YSNNKISLQEVRELLGCVDKKI-----LEGIVRDIISSDVKSAIDGFRELCNASTPVIIF 278 Query: 306 FSLVKRVHAFSMYNLDR 322 + K V+ MY++D+ Sbjct: 279 EGMQKVVYGLCMYSIDK 295 >gi|305667604|ref|YP_003863891.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170] gi|88709654|gb|EAR01887.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170] Length = 614 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 41/241 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I L + ALLF G +G+GK T A + Q+ Sbjct: 16 RKYRPQTFKDVVGQQAITNTLLNAIEHNHLAQALLFCGPRGVGKTTCARILAKQINQDG- 74 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 DF + + L+ + +VD+IR + + Sbjct: 75 ---------------------TEREDEDFAFNIFELDAASNN-----SVDDIRNLIDQVR 108 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++++A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 109 IPPQVGKYKVYIIDEVHMLSQSAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQI 168 Query: 184 IKFNSLSENNLYKALEQLK-------IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 F ++ + A E LK I+ D + A G++ A+ I D+++ Sbjct: 169 FDFKRIT---VKDAAEYLKYIAKNQGIVADDDALHIIAQKADGAMRDALSIF----DRVV 221 Query: 237 S 237 S Sbjct: 222 S 222 >gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] Length = 892 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + L + ++ HA LF G +G GK ++ F A + Q Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEQG 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C+ K + S D L + + N +DE+R +R Sbjct: 68 P--TDHPCNECS------ACKSILSGQSMDVLEIDAASN---------RGIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALE---QLKIMGWDS-KRDFVKIAAYGSVARAIKIL 228 F ++ +++ + L + + G DS + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSIL 221 >gi|152964436|ref|YP_001360220.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] gi|151358953|gb|ABS01956.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] Length = 712 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 37/250 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P +++ G E + L Q GR+ HA LF G +G GK T A + Q Sbjct: 7 RRYRPETFEQVIGQEHVTAPLMQALSKGRVTHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C +A+ + G VD+ R +R Sbjct: 67 P--TPTPCGEC--DSCV----DLANGGPGSIDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V ++D ++ NALLK++EEPP V F+ + +L+TIRSR Sbjct: 112 VSFAPARDRFKVYILDEAHMVSPQGFNALLKTVEEPPPHVKFVFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI----------AAYGSVARAIKILHYD 231 F + L L +L ++R+ V+I A GSV + +L Sbjct: 172 HHYPFRLVPPGQLTAYLAEL------AEREGVRIGKGVLPLVVRAGGGSVRDTLSVL--- 222 Query: 232 CDKIISSYID 241 D++I+ D Sbjct: 223 -DQLIAGAGD 231 >gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium carboxidivorans P7] gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium carboxidivorans P7] gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium carboxidivorans P7] gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium carboxidivorans P7] Length = 541 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 116/285 (40%), Gaps = 37/285 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G + I L + R+ HA LF G +G GK + A V Sbjct: 13 RIFDDV-----VGQKHITVTLKNQIRNNRIAHAYLFSGTRGTGKTSTAKILAKAVNCTDL 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C D C K++ S D + + + K R D I ++Y Sbjct: 68 RDGEPCNEC--DMC----KKINSGISIDVIEMDAA-----SKRRLEDIKDVIENVKY--- 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V ++D V + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 -PPQEGKYKVYIMDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRCQK 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS-- 237 F + ++++ + + I D + + + G++ A+ IL D+ IS Sbjct: 173 FDFRRIKSSDIFGRMRDIVKEQGIFADDRSLNLIARMSDGAMRDALSIL----DQAISMG 228 Query: 238 -------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 S + ++ + E ++ I D+ + + K+ D ++ Sbjct: 229 GGKVEYESVVSMLGLVTNENMIKLADSIIDKNVEESMKVIDDIVL 273 >gi|295694730|ref|YP_003587968.1| DNA-directed DNA polymerase [Bacillus tusciae DSM 2912] gi|295410332|gb|ADG04824.1| DNA-directed DNA polymerase [Bacillus tusciae DSM 2912] Length = 338 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 15/173 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L ++ G HA LF G + + +A VL D + P C P ++ Sbjct: 17 LRRWLRRGEWAHAYLFVGPETGDQDQAAEYFASGVLCE-DRANPPCGSC------PSCRR 69 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +A H H L Y I +D++R ++ F SL A RV +I D M Sbjct: 70 LA-HGNHFGLVQVYPDGQS-------IKIDQLRELQRFFSLRAIERENRVYIIHGADRMT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 AAN+LLK LEEP + IL + +L+T+RSRC ++F++ LY+ Sbjct: 122 PEAANSLLKFLEEPASGTVGILTAKRPEGVLATVRSRCQVLRFSAPRPEVLYR 174 >gi|326383462|ref|ZP_08205149.1| DNA polymerase III subunit delta' [Gordonia neofelifaecis NRRL B-59395] gi|326197868|gb|EGD55055.1| DNA polymerase III subunit delta' [Gordonia neofelifaecis NRRL B-59395] Length = 416 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI-- 166 I+V +IR I + TG W++++++ D + ANALLK++EEPP + +F+L Sbjct: 113 TISVAQIRGIVQLAARRPTTGRWQIVVVEDADRLTEQGANALLKAVEEPPDRTIFLLCAP 172 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAI 225 S A I T+RSRC + + + + + L + G ++ R ++ A G V RA Sbjct: 173 SVAPEDIAITLRSRCRHVGLTAPAAAGIARVL--IDRDGIEADRAEWAASVAGGHVGRAK 230 Query: 226 KI 227 ++ Sbjct: 231 RL 232 >gi|291333850|gb|ADD93532.1| DNA polymerase III subunits gamma and tau [uncultured marine bacterium MedDCM-OCT-S04-C191] Length = 625 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 19/205 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R P + L G + I + L SGR+ HA LF G +G+GK + A +L Sbjct: 5 VLARKLRPNRFEDLIGQKTISRTLRNAVTSGRVAHAFLFSGSRGVGKTS-----AARILT 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 AP + +PC ++ +A D Y ++ + + ++ IR + Sbjct: 60 KALNCLAPE---DGNPCGKCRNCIEITENASPDV----YEIDAASNRG-----IENIREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + ++V +ID + + NALLK+LEEPP V FIL + + TI Sbjct: 108 RDNVQYAPAQCRYKVYIIDEAHMLTLESFNALLKTLEEPPSHVKFILATTDPHKLPQTII 167 Query: 179 SRCLSIKFNSLSENNLYKALEQLKI 203 SRC F + + LE++ + Sbjct: 168 SRCQRYDFVRVPLQQMAGFLEKVTV 192 >gi|309810918|ref|ZP_07704719.1| putative DNA polymerase III, delta' subunit [Dermacoccus sp. Ellin185] gi|308435224|gb|EFP59055.1| putative DNA polymerase III, delta' subunit [Dermacoccus sp. Ellin185] Length = 393 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 19/174 (10%) Query: 14 LFGHEDIEKFLSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G ++ + LS+ R M HA L G G G++ +A L+ P R C Sbjct: 21 LVGQQEAVRTLSEAVGDARRMTHAWLITGPPGSGRSNAARSFAA-ALECPQGGCGKCREC 79 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 SHA D +S S I V E R + + G WR Sbjct: 80 R-------TTIDGSHA--DVQIVSTS--------GLTIQVREARDLALQAQSSPTVGRWR 122 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 VI+I+ D + AA+ALLK+LEEP + +++L + + ++ TIRSR ++ Sbjct: 123 VIVIEDADRLTERAADALLKALEEPVPRTVWLLCAPSVEDVIVTIRSRSRHVRL 176 >gi|107100963|ref|ZP_01364881.1| hypothetical protein PaerPA_01001993 [Pseudomonas aeruginosa PACS2] Length = 677 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 15/185 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + S P C+ Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTPCGECS 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 61 ------VCREIDEGRFVDLIEVDAASRTK---------VEDTRELLDNVQYSPTRGRYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V F+L + + TI SRCL ++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPPER 165 Query: 194 LYKAL 198 + + L Sbjct: 166 VVEHL 170 >gi|292487961|ref|YP_003530838.1| DNA polymerase III subunit delta' [Erwinia amylovora CFBP1430] gi|292899180|ref|YP_003538549.1| DNA polymerase III subunit delta' [Erwinia amylovora ATCC 49946] gi|291199028|emb|CBJ46139.1| DNA polymerase III, delta' subunit [Erwinia amylovora ATCC 49946] gi|291553385|emb|CBA20430.1| DNA polymerase III, delta' subunit [Erwinia amylovora CFBP1430] gi|312172086|emb|CBX80343.1| DNA polymerase III, delta' subunit [Erwinia amylovora ATCC BAA-2158] Length = 334 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 12/185 (6%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HHALL + G+G L + ++ + P + + C +A + D Sbjct: 22 RGHHALLIQALPGMGDDALIWGIGRWLM-----CRQPQGLKSCGKCHACQLMLAGNH-PD 75 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + Y L GK + +D +R + L A G +V+ + + AANALL Sbjct: 76 W----YRLEADKGK--NALGIDAVRGVTDKLYHHAQQGGAKVVWLPDAQQLTEAAANALL 129 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K+LEEPP+ F+L S +L T+RSRCL E + L++ + G D +R Sbjct: 130 KTLEEPPKNTWFLLSSRQPSRLLPTLRSRCLLWHLAPPEERQGLQWLQKHCVAGIDERRA 189 Query: 212 FVKIA 216 ++++ Sbjct: 190 ALRLS 194 >gi|227539240|ref|ZP_03969289.1| DNA polymerase III gamma/tau subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227240922|gb|EEI90937.1| DNA polymerase III gamma/tau subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 379 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 42/248 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH++I+ L + R+ HA LF G +G G L YA + + CN Sbjct: 6 IIGHQEIKDHLVRTVLENRVSHAQLFLGPEGSGSLALAHAYAQFINCEAKLADDSCGQCN 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + K +H L+ S+ K GK T +T E R + + + YWR Sbjct: 66 S--CRKYAK-----IIHPDLHFSFPFFAK-GKEETSVTYMEEWRAAFLKNPYLSLEYWRG 117 Query: 134 IMIDPVDGMNRNAA---------------------------------NALLKSLEEPPQK 160 + N N A NALLK +EEPP+K Sbjct: 118 QLEADNKQANINIAEAHDIIKKLSLKAFEAEYKILIMWLPEYLDTQGNALLKLIEEPPEK 177 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LF+L+S IL+TI SR +K L + L + + + + + IA G+ Sbjct: 178 TLFLLVSENQDRILNTIISRTQLVKIQKLPHQEITNYLIEERGIQKEQAGEIAFIAD-GN 236 Query: 221 VARAIKIL 228 + +A+ +L Sbjct: 237 LQQALNLL 244 >gi|208742218|ref|YP_002267670.1| DNA polymerase III subunits gamma and tau [Bacillus cereus] Length = 151 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 ++E R+IR + L TG ++V +ID V ++ +A N+LLK+LEEPP V+FIL + S Sbjct: 1 MEETRQIRDQVHLAPVTGKYKVYIIDEVHMLSNSAFNSLLKTLEEPPAHVIFILATTDSQ 60 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 + TI SRC KF ++ L +++LK + D Sbjct: 61 KVPKTIISRCQQFKFRNIP---LQAMIDRLKFISND 93 >gi|297569219|ref|YP_003690563.1| DNA polymerase III, subunits gamma and tau [Desulfurivibrio alkaliphilus AHT2] gi|296925134|gb|ADH85944.1| DNA polymerase III, subunits gamma and tau [Desulfurivibrio alkaliphilus AHT2] Length = 678 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 26/236 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+ HA+LF G +G+GK TL R L Sbjct: 5 VLARKWRPRTFAEVVGQRPVVRTLQNALRRERVAHAMLFSGVRGVGKTTLA-RIMAKAL- 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 N ++A R CN C+ + A A LH+ S + EIR + Sbjct: 63 NCLAAEAEQRPCNQ--CASCLAFNAGQAVDLHEIDGASNR------------GIQEIREL 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + G +++++ID V + A NALLK+LEEPP V F+ + I TI Sbjct: 109 KENIRFMPVAGKYKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPVTIL 168 Query: 179 SRC-----LSIKFNSLSE-NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC + F L + A E+++I DS + + A GSV + +L Sbjct: 169 SRCQRHELTRVPFAELQDFFRRVAAAEEVEIP--DSALEMIVREADGSVRDGLSLL 222 >gi|322435537|ref|YP_004217749.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX9] gi|321163264|gb|ADW68969.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX9] Length = 680 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 29/248 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+ H +F G +GIGK T+ R L Sbjct: 5 VLARKYRPQRFADVAGQDHVTVTLMNALTQNRIAHGYIFSGHRGIGKTTIA-RILACALN 63 Query: 61 NPDFSKAPVRMCNPDPCS---PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + + VR P+PC V+ A +++ D + + + N +DEIR Sbjct: 64 CRNAIGSAVR-PTPEPCEVCESCVEIRAGNSV-DVIEIDAATN---------RGIDEIRE 112 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + +++ ++D + A NALLK+LEEPP ++F++ + I T+ Sbjct: 113 LRDAARYRPSRDRFKIYILDEAHQITDAAFNALLKTLEEPPDHIVFMMATTQPEDIPQTV 172 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIM----GWDSKRDFVKI---AAYGSVARAIKILHY 230 RSRC F+++ L L +L+ + G D+ + + A GS+ A+ I+ Sbjct: 173 RSRCQHFSFHAV---KLVDILSELRGIAEHEGVDADEGALSLLAEAGDGSMRDALSIM-- 227 Query: 231 DCDKIISS 238 D+ I+S Sbjct: 228 --DQAIAS 233 >gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides KD131] gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides KD131] Length = 582 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 16/233 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ HA + G +G+GK T A G Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC A + +TG V +IR I Sbjct: 71 VGPDGTGGP----TTEPCGQCEPCRAISEGRHVDVMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 120 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 RC + + L ++ G + RD + + AA GSV A+ ++ Sbjct: 180 RCQRFDLKRIEPEVMMAHLARVAGKEGAELTRDALALITRAAEGSVRDAMSLM 232 >gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] Length = 804 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DEIR +R + Sbjct: 68 PTDHPCNECS------VCKSILSGQSMDVLEIDAASN---------RGIDEIRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALE 199 F ++ +++ + L+ Sbjct: 173 YTFRRITSDDIAQRLQ 188 >gi|94264278|ref|ZP_01288072.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93455323|gb|EAT05530.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 706 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 16/195 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-L 59 ++ R + P + G + + L R+ HA+LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFAEVVGQRPVVRTLQNALRLQRVAHAMLFAGVRGVGKTTLARLMAKALNC 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 Q P+ + P C +++ + A D + + N R + + E++ Sbjct: 65 QEPEPASRPCNQCK------SCQEINAGAAVDLHEIDGASN------RGIQEIRELKENI 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 FL ++A+ +++++ID V + A NALLK+LEEPP V F+ + I TI S Sbjct: 113 RFLPVSAS---YKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILS 169 Query: 180 RCLSIKFNSLSENNL 194 RC + ++ + L Sbjct: 170 RCQRYELTRVAYDEL 184 >gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis SKA53] gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis SKA53] Length = 572 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFMMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P DPC +A + +TG V +IR I Sbjct: 69 IGPDGTGGP----TTDPCGTCEHCVAIMEGRHVDVMEMDAASRTG-------VGDIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V +++NA NALLK+LEEPP+ V FI + + T+ S Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLS 177 Query: 180 RC 181 RC Sbjct: 178 RC 179 >gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides 2.4.1] gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides 2.4.1] Length = 582 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ HA + G +G+GK T A G Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC A + +TG V +IR I Sbjct: 71 VGPDGTGGP----TTEPCGQCEPCRAISEGRHVDVMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 120 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALEQLKIM-GWDSKRD---FVKIAAYGSVARAIKIL 228 RC + + L ++ G + RD + AA GSV A+ ++ Sbjct: 180 RCQRFDLKRIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM 232 >gi|194476774|ref|YP_002048953.1| DNA polymerase III subunit delta [Paulinella chromatophora] gi|171191781|gb|ACB42743.1| DNA polymerase III subunit delta [Paulinella chromatophora] Length = 330 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 27/200 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L S R+ A LF G G+G+ R+ +L + + R Sbjct: 25 LQGQTQAKILLQLALKSQRIAPAYLFSGPSGVGRTLAVLRFLEGILSGMQGNMSTRR--- 81 Query: 74 PDPCSPFVKQMASHALHDFLYLSYS--------LNPKTGKW----RTV--ITVDEIRRIR 119 ++A D L++ + L + GK+ RT+ I + ++R Sbjct: 82 ---------RLAERNFPDLLWIEPTYQIQGQLILASQAGKFNIPRRTLPQIRLTQVRNAI 132 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 FLS + +++I+ + M AANALLK+LEEP +L ILIS +L+TIRS Sbjct: 133 SFLSRRPLESAYSIVVIENSEMMLEGAANALLKTLEEPGSGLL-ILISSNPERLLATIRS 191 Query: 180 RCLSIKFNSLSENNLYKALE 199 RC I F L N L + L+ Sbjct: 192 RCQQIPFKRLDTNTLMEILK 211 >gi|281356099|ref|ZP_06242592.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis ATCC BAA-548] gi|281317468|gb|EFB01489.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis ATCC BAA-548] Length = 615 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 +I R + P + G + + + L R HA LF G +G+GK TL F A + Sbjct: 6 VIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAYLFVGPRGVGKTTLARIFAKAMNC 65 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 L D C + C + +A D + + + TG ++R + Sbjct: 66 LDPQDGEPC----CRCESC----RAIAEERSLDVMEVDAASRNTTG---------DMREL 108 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + G +++ +ID V +++ A N LLK++EEPP V FI + +L TI Sbjct: 109 AEDVLTQPVGGRYKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTII 168 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC + + E+L+++ DS++ + +A G++ARA + D ++ Sbjct: 169 SRCQRFDLLPIPTRLIT---ERLRLI-CDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQ 224 Query: 239 YI 240 I Sbjct: 225 MI 226 >gi|190570594|ref|YP_001974952.1| Putative DNA polymerase III, gamma/tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019154|ref|ZP_03334961.1| putative DNA polymerase III, gamma/tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356866|emb|CAQ54240.1| Putative DNA polymerase III, gamma/tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995263|gb|EEB55904.1| putative DNA polymerase III, gamma/tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 283 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I V+++R ++ FL L+ +++ +ID ++ M NA NA+LK LEEPPQ ++ISH Sbjct: 63 TIGVEKVREMKNFLYLSPIQSEYKIAIIDSLEAMTSNAKNAILKILEEPPQNSKILIISH 122 Query: 169 ASPTILSTIRSRCLSIKF 186 I +TIR RC + Sbjct: 123 KLYDIQTTIRCRCFQLNL 140 >gi|258406410|ref|YP_003199152.1| DNA polymerase III, delta prime subunit [Desulfohalobium retbaense DSM 5692] gi|257798637|gb|ACV69574.1| DNA polymerase III, delta prime subunit, putative [Desulfohalobium retbaense DSM 5692] Length = 286 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 +LL EG + + L +A + N ++AP R C P +Q+A D + L Sbjct: 29 SLLLEGGREPERRALALYWAARL--NCLQAEAPCRHC------PTCQQIAEEIFRDLIVL 80 Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 G+ + I +D +R +R L+ G RVI+I + + AANALLKSLE Sbjct: 81 D-------GR-QESIRIDPVRTMRRELASRPEYGGTRVILIHEAQSLTQEAANALLKSLE 132 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 EPP F+L + IL T+ SR + N Sbjct: 133 EPPPGNAFVLTAPQRQWILPTLVSRSWVLTLN 164 >gi|269926492|ref|YP_003323115.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] Length = 550 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 28/223 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E ++K L SG++ HA LF G +G GK + A V + + CN Sbjct: 17 LVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAKAV----NCLSEGTKPCN 72 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 CS + A+ D + + + K V+++ I ++ ++V Sbjct: 73 --SCSACLSINEGRAV-DLIEIDAASRRK---------VEDVADIIERVNFAPAELRYKV 120 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V + +A NALLK+LEEPP +F+L + +L TI SRC F ++ Sbjct: 121 YIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITPRE 180 Query: 194 LYKAL------EQLKIMGWDSKRDFVKI--AAYGSVARAIKIL 228 + + L E +KI K + I A+ GS+ AI IL Sbjct: 181 IVERLAFIAENENIKIQ----KDALIAIAKASTGSLRDAISIL 219 >gi|194335833|ref|YP_002017627.1| DNA-directed DNA polymerase [Pelodictyon phaeoclathratiforme BU-1] gi|194308310|gb|ACF43010.1| DNA-directed DNA polymerase [Pelodictyon phaeoclathratiforme BU-1] Length = 389 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 35/252 (13%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQN--PDFSKAP 68 + + G + + L +GR HA LF G G GK ++ F A + QN D K Sbjct: 4 KNIIGQKQQIRVLQNALETGRFAHAYLFTGPDGSGKESVAFEIASLLNCQNAATDVHKGS 63 Query: 69 VRMCNPD---------PCSPFVKQMASHAL-------------------HDFLYLSYSLN 100 C PD P ++ + S L +D L N Sbjct: 64 CGTC-PDCLQIQSFMHPNVEYIFPVESALLDPGDSAKKENKRFTDAKERYDALLEQKKEN 122 Query: 101 P--KTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 P R++ I ++I +++ + G ++ +I + ++ +AAN LLK LEEP Sbjct: 123 PYLSPAMERSMGILTEQIISLQHKALFMPSEGSKKIFIISQAERLHPSAANKLLKLLEEP 182 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 P V+FIL+S +L TIRSRC +++F+ ++ L L++ + + + F+ + Sbjct: 183 PAHVVFILVSSRPEALLPTIRSRCQAVRFSRITPQELRLWLQENRPEIKEPELSFIVSFS 242 Query: 218 YGSVARAIKILH 229 G++ A ++++ Sbjct: 243 RGNLRLAWELIN 254 >gi|212704319|ref|ZP_03312447.1| hypothetical protein DESPIG_02374 [Desulfovibrio piger ATCC 29098] gi|212672281|gb|EEB32764.1| hypothetical protein DESPIG_02374 [Desulfovibrio piger ATCC 29098] Length = 670 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G + ++ LS+ R+ A L G +G+GK T+ +A + + Sbjct: 10 YRPQTFAQVAGQDMVKAVLSRAAAEDRVAAAYLLSGTRGVGKTTIARIFAKAL----NCR 65 Query: 66 KAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 AP P+PC+ +++ + D + + N +V++ R +R + Sbjct: 66 HAP----GPEPCNQCDQCRKITQGSHVDVTEIDGASN---------NSVEDARALRENIG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID ++R+A NALLK+LEEPP +V+FI + + TI SRC Sbjct: 113 YAPMEGRYKVFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQH 172 Query: 184 IKFNSLSENNLYKALEQL 201 F L E+ L + L Q+ Sbjct: 173 FVFRHLGEDALVQHLSQV 190 >gi|168205403|ref|ZP_02631408.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens E str. JGS1987] gi|170663165|gb|EDT15848.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens E str. JGS1987] Length = 531 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 21/251 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ + P + + G + + L + S ++ H+ L GE+G GK T +L Sbjct: 1 MLYEKYRPNTFESVIGQGENAEILKKQVASKKIAHSYLLYGERGSGKTT-----TARILA 55 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ N +PC +A + G VD IR I Sbjct: 56 KAINCLSPI---NGEPCGKCANCIAIEEKKAIDVVEIDAASNNG-------VDNIRNIID 105 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID +++ A+NA LK+LEEPP+ +FIL + + TI SR Sbjct: 106 DMKYAPTSMKYKVYIIDEAHMLSKAASNAFLKTLEEPPEYGVFILCTTEQTALPITILSR 165 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI------AAYGSVARAIKILHYDCDK 234 C F + +++ + + + D KI A G+V AI IL + Sbjct: 166 CQRYTFKHIDVKDIFNRINFIATQEGYNPSDKEKILYLISKMADGAVRDAICILEQVING 225 Query: 235 IISSYIDLIHI 245 I+ Y +++ + Sbjct: 226 NITDYNEVVKL 236 >gi|293605097|ref|ZP_06687489.1| DNA-directed DNA polymerase III subunit delta' [Achromobacter piechaudii ATCC 43553] gi|292816500|gb|EFF75589.1| DNA-directed DNA polymerase III subunit delta' [Achromobacter piechaudii ATCC 43553] Length = 349 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR + + + + G WRV ++ P +N ++NALLK LEEPP +F+L++ A Sbjct: 115 IRIDQIRALESWFNTATHRGGWRVALLYPAHALNVVSSNALLKVLEEPPPHTVFLLVADA 174 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L T+ SRC + + + AL+ L+ + R++ Sbjct: 175 PDRLLPTLVSRCRRLPLPAPDPDT---ALQWLRAQNVEPAREW 214 >gi|294085056|ref|YP_003551816.1| replication factor C domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664631|gb|ADE39732.1| replication factor C conserved domain:ATP/GTP-binding site motif A [Candidatus Puniceispirillum marinum IMCC1322] Length = 620 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 20/186 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L GR+ HA + G +G+GK + A G Sbjct: 11 VLARKYRPETFSALIGQDALVRTLGNALSLGRLAHAFVLTGVRGVGKTSAARLLAKGLNC 70 Query: 60 QNPDFSKA----PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + A P C +PC+ +A+ D L + + + TG VD+ Sbjct: 71 IGPDGNGAATLEPCGTC--EPCT----AIAAGRHVDVLEIDAASH--TG-------VDDA 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I ++ + +++ +ID V M+++A NALLK+LEEPP V FI + + Sbjct: 116 REIIEAVNYRPVSARFKIYIIDEVHMMSKSAFNALLKTLEEPPDAVKFIFATTEIRKVPV 175 Query: 176 TIRSRC 181 TI SRC Sbjct: 176 TILSRC 181 >gi|108801872|ref|YP_642069.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. MCS] gi|119871025|ref|YP_940977.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. KMS] gi|108772291|gb|ABG11013.1| DNA polymerase III, tau subunit [Mycobacterium sp. MCS] gi|119697114|gb|ABL94187.1| DNA polymerase III, tau subunit [Mycobacterium sp. KMS] Length = 616 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSTALSAGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C D C + D L + + VD+ R +R Sbjct: 64 GP--TPTPCGTC--DSCVALAPNGPGN--MDVTELDAASHGG---------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 109 RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F L+ + LE++ Sbjct: 169 THHYPFRLLAPKTMRTLLERI 189 >gi|163847490|ref|YP_001635534.1| DNA polymerase III subunit delta' [Chloroflexus aurantiacus J-10-fl] gi|163668779|gb|ABY35145.1| DNA polymerase III, delta prime subunit [Chloroflexus aurantiacus J-10-fl] Length = 340 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++GHE + L S ++ HA LF G QG+GK+ L R A +L Sbjct: 4 VYGHEWAIEQLRSNIRSQQVAHAYLFAGPQGLGKSLLALRMAQALLCERQTG-------- 55 Query: 74 PDPCSPFVK-QMASHALHDFLYLS------YSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 DPC + H H + ++ + + + + + IR + L+L Sbjct: 56 -DPCLQCRSCRRIDHGSHPDVRIAGMETQAAAAKAEDAARQKELKIATIREWQRDLALRP 114 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 RV+++ D ++ AANA+LK+LEEPP +L++H S +L TI SRC ++ Sbjct: 115 YEAPRRVLILHDADRLSEEAANAMLKTLEEPPDYATLLLVAH-SNELLPTIVSRCRVLRL 173 Query: 187 NSLSENNLYKAL 198 L + AL Sbjct: 174 RPLPREQVASAL 185 >gi|307128581|ref|YP_003880611.1| DNA polymerase III subunit gamma [Candidatus Sulcia muelleri CARI] gi|306483043|gb|ADM89913.1| DNA polymerase III subunit gamma [Candidatus Sulcia muelleri CARI] Length = 347 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 29/191 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + I K L + + + LF G +G+GK T Sbjct: 8 RKYIPIDFDDVIGQKHITKTLKKAIEKKMLSQSFLFCGPRGVGKTTCA------------ 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K R N +++ + + L + N +VD+IR I L+ Sbjct: 56 --KILARKVNK------FSYEEKNSMFNIIELDAASNN---------SVDDIRNIINQLN 98 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ +A NA LK LE PP V+FIL + ILSTI SRC Sbjct: 99 FRPQYGKYKVYIIDEVHMLSNSAFNAFLKILEYPPSHVIFILATTEKNKILSTIISRCQV 158 Query: 184 IKFNSLSENNL 194 F +S N++ Sbjct: 159 YDFKRISVNDI 169 >gi|258645192|ref|ZP_05732661.1| putative DNA polymerase III [Dialister invisus DSM 15470] gi|260402541|gb|EEW96088.1| putative DNA polymerase III [Dialister invisus DSM 15470] Length = 342 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++G E +++ L + R+ H ++F G+ G+GK T F +A + + ++ Sbjct: 8 VYGQEKLKRELKLLMENHRLPHTMIFYGDDGLGKTTAAFDFADFLTGASEKIWVEIKKIK 67 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 ++ + + + + P + + +D+ R + + + RV Sbjct: 68 SSKNEKLLENLKGDRV-------WYIRPMGME----LKIDQFRA--FMEEMASFDEKLRV 114 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID MN+ AAN+ LK+LEEP + + FIL++ +L TI SR F L EN Sbjct: 115 CIIDDAQKMNQYAANSFLKTLEEPVENLYFILVTSDINALLPTIVSRGERFPFFPLMENE 174 Query: 194 LYKALEQL 201 Y +E + Sbjct: 175 FYYLVETV 182 >gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum magnetotacticum MS-1] Length = 597 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 18/185 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+ HA + G +G+GK T R L Sbjct: 12 VLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTA-RIIARALN 70 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 D P DPC + +A D L + + +TG V++IR Sbjct: 71 CVGTDGKGGPTI----DPCGVCEHCRAIAEDRHVDILEMDAA--SRTG-------VNDIR 117 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ A NALLK+LEEPP+ V FI + I T Sbjct: 118 EIIEGVRYRPTSARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVT 177 Query: 177 IRSRC 181 + SRC Sbjct: 178 VLSRC 182 >gi|149186799|ref|ZP_01865109.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21] gi|148829466|gb|EDL47907.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21] Length = 612 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 27/246 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+ HA L G +G+GK + R L Sbjct: 80 VLARKYRPQTFAELIGQDAMVRTLANAIARDRLAHAFLMTGVRGVGKTSTA-RLIAKALN 138 Query: 61 --NPDFSKAP-VRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD P + C +PC+ + H D + + + + TG VD++R Sbjct: 139 CIGPDGEGGPTISPCGVCEPCTAIAE--GRHI--DVIEMDAASH--TG-------VDDVR 185 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T Sbjct: 186 EIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVT 245 Query: 177 IRSRCLSIKFN----SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---- 228 + SR L E + + + + D AA GSV + IL Sbjct: 246 VLSRTQRFDLRRIPVELLEAHFAEICRKEGVEAEDEALHIAANAAEGSVRDGLSILDQAI 305 Query: 229 -HYDCD 233 H D D Sbjct: 306 AHADMD 311 >gi|126437840|ref|YP_001073531.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. JLS] gi|126237640|gb|ABO01041.1| DNA polymerase III, tau subunit [Mycobacterium sp. JLS] Length = 618 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSTALSAGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C D C + D L + + VD+ R +R Sbjct: 64 GP--TPTPCGTC--DSCVALAPNGPGN--MDVTELDAASHGG---------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 109 RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F L+ + LE++ Sbjct: 169 THHYPFRLLAPKTMRTLLERI 189 >gi|169825661|ref|YP_001695819.1| DNA polymerase III subunit delta' [Lysinibacillus sphaericus C3-41] gi|168990149|gb|ACA37689.1| DNA polymerase III subunit delta' [Lysinibacillus sphaericus C3-41] Length = 334 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 14/180 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L + R+ HA +F+GE+G GKA + + +L P C C Sbjct: 15 VMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEHPNENVPCETCRN--C-- 70 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + H ++ Y G++ I +D++R + + + ++ ++ Sbjct: 71 ---RRVDSGNHPNIHQIYP----EGQF---IKIDQMRELIGEMKMMGVEEGRKIYVLHHA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D +N +AN +LK LEEP +V ILI+ +IL TIRSRC IKF + + L + L+ Sbjct: 121 DRLNTASANMILKFLEEPDGEVTAILITEQMQSILPTIRSRCQHIKFQKMPRHVLLQHLQ 180 >gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 539 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 49/269 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +FGHE I + L Q+ + ++ H +LF G G GK T Sbjct: 9 YRPSTTDGIFGHEYILESLKQFINANQIPH-MLFYGPPGTGKTTTALA------------ 55 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 VKQ+ F L LN + +D +R +I+ F S Sbjct: 56 --------------IVKQLCGT---KFSALVLELNASDERG-----IDVVRDQIKSFAST 93 Query: 125 -TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T T + I++D D + ++A NAL ++LE+ FI I + I I+SRC Sbjct: 94 RTLYTNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAK 153 Query: 184 IKFNSLSENNLYKALEQLKI-----MGWDSKRDFVKIAAYG--SVARAIKILHYDCDKII 236 ++F LS N L K +E + + D+K+ ++I+ S+ ++ L C +I Sbjct: 154 MRFGPLSPNALTKIVENITTKEGMEIDDDAKKSIIEISKGDARSIINTLQALSMTCKQIT 213 Query: 237 SSYI-DLIHIPRQEYALQKMQQIADELLS 264 +S + ++ +P ++ I ELLS Sbjct: 214 NSTLYTMVGLPTP----AQIDDIISELLS 238 >gi|268679083|ref|YP_003303514.1| DNA polymerase III subunits gamma and tau [Sulfurospirillum deleyianum DSM 6946] gi|268617114|gb|ACZ11479.1| DNA polymerase III, subunits gamma and tau [Sulfurospirillum deleyianum DSM 6946] Length = 546 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 33/227 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L G E I + LS R+ HA LF G +G GK + +A ++ + Sbjct: 10 YRPSSFDKLIGQEAITQTLSSALNQNRLSHAYLFSGLRGSGKTSTARIFAKALVCEQGPN 69 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 P +C + C A+ H D + + + N +D+IR + Sbjct: 70 ATPCDVC--EHCLS-----ANENRHIDIIEMDAASNRG---------IDDIRELIESTKY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ +++ +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 114 KPSSARFKIFIIDEVHMLTTQAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRVQHF 173 Query: 185 KFNSLSEN----------NLYK------ALEQLKIMGWDSKRDFVKI 215 +F + ++ NL K ALE L G S RD + + Sbjct: 174 RFKQIKQSDVINHLCHILNLEKIEYEKEALEMLSRAGNGSLRDTLTL 220 >gi|148272109|ref|YP_001221670.1| DNA polymerase III subunit delta' [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830039|emb|CAN00968.1| DNA polymerase III, delta' subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 414 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + H+ L G G G++ L + +A +L + P+ + +Q+A+ + D Sbjct: 58 LAHSWLITGPPGSGRSNLAYAFATALLSD----------GTPEGDAATARQVAARSHPDL 107 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ R +I +DE+R + + + G +RV++++ D M +N LLK Sbjct: 108 GVLATE--------RVIIAIDEVRALVTSSQYSPSVGRYRVMVVEDADRMTERTSNLLLK 159 Query: 153 SLEEPPQKVLFILISHASPTILSTI 177 +LEEPP++ ++IL + + ++ TI Sbjct: 160 ALEEPPERTIWILCAPSEADLIPTI 184 >gi|170780643|ref|YP_001708975.1| DNA polymerase III subunit delta' [Clavibacter michiganensis subsp. sepedonicus] gi|169155211|emb|CAQ00312.1| putative DNA polymerase [Clavibacter michiganensis subsp. sepedonicus] Length = 419 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + H+ L G G G++ L + +A +L + P+ + +Q+A+ + D Sbjct: 63 LAHSWLITGPPGSGRSNLAYAFATALLSD----------GTPEGDAATSRQVAARSHPDL 112 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ R +I +DE+R + + + G +RV++I+ D M +N LLK Sbjct: 113 GVLATE--------RVIIAIDEVRALVTSSQYSPSVGRYRVMVIEDADRMTERTSNLLLK 164 Query: 153 SLEEPPQKVLFILISHASPTILSTI 177 +LEEPP++ ++IL + + ++ TI Sbjct: 165 ALEEPPERTIWILCAPSEADLIPTI 189 >gi|238791854|ref|ZP_04635491.1| DNA polymerase III subunit delta' [Yersinia intermedia ATCC 29909] gi|238728958|gb|EEQ20475.1| DNA polymerase III subunit delta' [Yersinia intermedia ATCC 29909] Length = 333 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HTAGRGHHALLLHALPGNGEEALIYGLSRWLMCQQRQGEKSCGECHS------CRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R+ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLAPEKGK--SSIGVELVRQQIDKLYSHAQQGGAKVVWLPHAELLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|218440105|ref|YP_002378434.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7424] gi|218172833|gb|ACK71566.1| DNA polymerase III, delta prime subunit [Cyanothece sp. PCC 7424] Length = 318 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 18/239 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--PDFSKAPVR 70 +L G + L S R+ A LF G G+G+ ++ +L + P ++ +R Sbjct: 6 QLIGQGQAIELLQCAIASNRIAPAYLFVGAAGVGRGLAAKCFSCSLLSHHFPPQQQSLIR 65 Query: 71 ---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + P +V+ H L K I +++IR I FLS Sbjct: 66 PKILAGNHPDLLWVQPTYQHQGKFLTALEAEEAGLKRKSPPQIRIEQIRDITRFLSRPPL 125 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 V++I+ M +AANALLK+LEE P + ILI+ ++ ++L T+ SRC I F+ Sbjct: 126 EALRTVVVIEDAQTMTESAANALLKTLEE-PGRCTLILIAPSTDSLLPTLVSRCQRIPFS 184 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 LS+ ++ L+ D+ I Y + + I + IS+Y L ++P Sbjct: 185 RLSDPDMEIILQ---------NNDYENILKYPEL---LGIAQGSPGEAISAYTQLQNLP 231 >gi|254388749|ref|ZP_05003982.1| DNA polymerase III subunit delta [Streptomyces clavuligerus ATCC 27064] gi|294813362|ref|ZP_06772005.1| DNA polymerase III subunit delta [Streptomyces clavuligerus ATCC 27064] gi|326441703|ref|ZP_08216437.1| DNA polymerase III subunit delta' [Streptomyces clavuligerus ATCC 27064] gi|197702469|gb|EDY48281.1| DNA polymerase III subunit delta [Streptomyces clavuligerus ATCC 27064] gi|294325961|gb|EFG07604.1| DNA polymerase III subunit delta [Streptomyces clavuligerus ATCC 27064] Length = 401 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 24/180 (13%) Query: 19 DIEKFLSQYYCSG------RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVR 70 D + F++ G RM HA LF G G G+ T +A LQ +PD + V Sbjct: 23 DADAFVTAVERGGDLPEASRMTHAWLFTGPPGAGRVTAARAFA-AALQCVSPDRALGGVP 81 Query: 71 MCN-PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANT 128 C D C H L +++ + I D++R +R + AN Sbjct: 82 GCGFCDGC------------HTALAGTHADITAVAAVGSQILADDMRDTVRKSFTSPAN- 128 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G W+VI+++ + +N +ANA+LK++EEP + +++L + + +L TIRSRC + + Sbjct: 129 GRWQVILVEDAERLNEKSANAVLKAVEEPAPRTVWLLCAPSIEDVLPTIRSRCRHLTLRT 188 >gi|90416006|ref|ZP_01223939.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2207] gi|90332380|gb|EAS47577.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2207] Length = 647 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 19/224 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKWRPRIFAEMAGQQHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILSKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ C+ ++ D + + + +TG VD++R + Sbjct: 65 EVGVSSVPCGECSS--CT----EIGEGRFIDLIEVDAA--SRTG-------VDDMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G +++ +ID V +++++ ALLK+LEEPP V F+ + + T+ SR Sbjct: 110 NVQYAPSRGRYKIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 CL +LS + E L+ + + + F + AA S+ARA Sbjct: 170 CLQFNLKNLSAERIT---EHLQFVLGEEQVPFEE-AALWSLARA 209 >gi|319898026|ref|YP_004136223.1| DNA polymerase iii, delta prime subunit [Haemophilus influenzae F3031] gi|317433532|emb|CBY81916.1| DNA polymerase III, delta prime subunit [Haemophilus influenzae F3031] Length = 327 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 28/195 (14%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+Y+Q ++Q + G HHA+L + + G+G L ++ K Sbjct: 10 PIYHQ-----------IAQTFDEGLGHHAVLIKADAGLGVERLFDALTQKIMCVAQGDK- 57 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P C+ M +H+ D+ + L+P GK I VD++R I ++ A Sbjct: 58 PCGQCHS------CHLMQAHSHPDY----HELSPIDGK---DIGVDQVRDINEIVAQHAQ 104 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +V+ + + + AANALLK+LEEP F+L + +S ++L+TI SRC + Sbjct: 105 QNGNKVVYVQGAERLTEAAANALLKTLEEPRPNTYFLLQTDSSASLLATIYSRC---QVW 161 Query: 188 SLSENNLYKALEQLK 202 +LS N A++ LK Sbjct: 162 NLSVPNEQMAVDWLK 176 >gi|254415353|ref|ZP_05029114.1| DNA polymerase III, delta' subunit domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177828|gb|EDX72831.1| DNA polymerase III, delta' subunit domain protein [Microcoleus chthonoplastes PCC 7420] Length = 310 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 30/204 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + L + R+ A LF G G+G+ + + + C Sbjct: 3 IIGQKQAIALLEGAMTANRIAPAYLFVGSPGVGRGLVARWFIERLF------------CQ 50 Query: 74 --PDPCSPFVK---QMASHA---------LHDFLYLSYSLNPKTGKWRTV---ITVDEIR 116 P P V+ Q +H LH+ + LS + G R I +++IR Sbjct: 51 DIPPQKQPLVQKRLQQGNHPDLLWVEPTYLHNGIRLSAKEAAEKGLKRKAPPQIRLEQIR 110 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I FL + ++++++ + M +AAN LLK+LEEP L ILI+ + +L T Sbjct: 111 EISQFLGRSPLEASRQIVVLEQTETMAESAANGLLKTLEEPGNATL-ILIAPSPDALLPT 169 Query: 177 IRSRCLSIKFNSLSENNLYKALEQ 200 + SRC I F+ L+++++ + L+Q Sbjct: 170 LVSRCQRIPFSRLAQDDMAQVLQQ 193 >gi|229083344|ref|ZP_04215703.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-44] gi|228699969|gb|EEL52595.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-44] Length = 327 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L GR+ HA L EG +G GK + A L P +MC C Sbjct: 17 KMLMNSIAKGRISHAYLLEGAKGTGKYETAIQMAKSFLCLQRKGVEPCQMCTN--CRRI- 73 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 H L++ + P I +I ++ S T +V +I+ D Sbjct: 74 ----DSGNHPNLHV---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L+ L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLAAEALIERLQ 180 >gi|261368397|ref|ZP_05981280.1| DNA polymerase III delta subunit [Subdoligranulum variabile DSM 15176] gi|282569564|gb|EFB75099.1| DNA polymerase III delta subunit [Subdoligranulum variabile DSM 15176] Length = 170 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 32/176 (18%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G+ ++ L +GR+ HA+L GE G G +A L D+ Sbjct: 4 RLAGNTALKAELGAALRTGRLPHAVLLIGEAGCGAG-----FAARCLAA-DY-------- 49 Query: 73 NPDPCSPFVKQMASHA-----LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL--SLT 125 Q HA D L +G+ I V +R +R + S Sbjct: 50 -------LYPQGGPHAEAVLKQEDTECLVLQGEGASGQ----IPVKRVREMREAIQHSAL 98 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + RV+ I +N ++ANA+LK +EEPP+ VLF+L + ++ T+L TIRSRC Sbjct: 99 STDAAGRVLFIYGAQNLNGSSANAMLKIIEEPPEGVLFLLTATSAATVLPTIRSRC 154 >gi|90406895|ref|ZP_01215086.1| HolB protein [Psychromonas sp. CNPT3] gi|90311937|gb|EAS40031.1| HolB protein [Psychromonas sp. CNPT3] Length = 338 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 24/202 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 PV+N+ L + Y GR+ H LLF G G+GK L + + ++L + + Sbjct: 11 LSPVFNELL-----------KTYQQGRLAHGLLFTGSVGLGKYKLASQLSVYLLCSDKQA 59 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C+ C F S H Y+ S N K I +DE+R + L+ Sbjct: 60 NGACGHCHS--CRLF-----SAGNHLDFYILKSENNKA------IGIDEVRALINMLNER 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +V++I +++ AANALLK+LEEP IL++ ++ T+ SR L Sbjct: 107 PHLGDNKVVLIKDSALLSKAAANALLKTLEEPQGNSYLILLADTHHQLMPTLLSRVLHQH 166 Query: 186 FNSLSENNLYKALEQLKIMGWD 207 ++ ++ L L++ + D Sbjct: 167 IHTPNDAQLLSWLDEQNVQVTD 188 >gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] Length = 597 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 24/194 (12%) Query: 2 IDRAFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY 54 + +A+ P++++ +L G + I LS S R+ A LF G +G GK T R Sbjct: 1 MSQAYQPLHHKYRPQRFDQLVGQDVIAATLSHALRSDRIAPAYLFSGPRGTGK-TSSARI 59 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 L N S P P+PC +++ D + + + N TG V Sbjct: 60 LARSL-NCLSSDTP----TPEPCGTCELCTTISAGTALDVIEIDAASN--TG-------V 105 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D IR + W+V ++D ++ A NALLK+LEEPP +V+F+L + Sbjct: 106 DNIRDLIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 165 Query: 173 ILSTIRSRCLSIKF 186 +L TI SRC F Sbjct: 166 VLPTILSRCQRFDF 179 >gi|126652961|ref|ZP_01725103.1| DNA polymerase III subunit delta' [Bacillus sp. B14905] gi|126590291|gb|EAZ84413.1| DNA polymerase III subunit delta' [Bacillus sp. B14905] Length = 334 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 14/184 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L + R+ HA +F+GE+G GKA + + +L P C C Sbjct: 15 VMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEHPNENVPCETCRN--C-- 70 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 + H ++ Y G++ I +D++R + + + ++ ++ Sbjct: 71 ---RRVDSGNHPNIHQIYP----EGQF---IKIDQMRELIGEMKMMGVEEGRKIYVLHHA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D +N +AN +LK LEEP +V IL++ +IL TIRSRC IKF + + L + L+ Sbjct: 121 DRLNTASANMILKFLEEPDGEVTAILLTEQMQSILPTIRSRCQHIKFQKMPRHVLLQHLQ 180 Query: 200 QLKI 203 + I Sbjct: 181 ENNI 184 >gi|212212864|ref|YP_002303800.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii CbuG_Q212] gi|212011274|gb|ACJ18655.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii CbuG_Q212] Length = 509 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + LS +HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + C +++ D + + K V++ R + Sbjct: 65 EKGVSANPCNDC--ENC----REIDEGRFPDLFEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + T+ SR Sbjct: 110 NIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 Query: 181 CLSIKFNSL 189 CL L Sbjct: 170 CLQFHLAQL 178 >gi|123965392|ref|YP_001010473.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9515] gi|123199758|gb|ABM71366.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9515] Length = 319 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 28/301 (9%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----QNPDFSK 66 N L ++++ + L + + +F G +GIGK + + N + + Sbjct: 6 NDNLLINKEVNQILENILQTKVFSNGYIFYGPEGIGKKQTAIEFIKEIFIQDSSNSNIQE 65 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 + +PD F+ ++ L S + K + I +++IR I+ FL+ + Sbjct: 66 KIIDNNHPD----FLLIEPTYVFKGNLINSSEADSSKNK-KATIRIEQIRNIKNFLAQKS 120 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++++I D +N A+N LLK+LEEP LFIL++ ++L TI SRC I+F Sbjct: 121 IESGKKIVLIIDADLLNEAASNCLLKTLEEPTNG-LFILLTSRLSSLLGTIISRCQLIRF 179 Query: 187 NSLSENNLYKALEQL-------KIMGWDSKRDFVKI--AAYGSVARAIKILHYDCDKIIS 237 S S YK LE I+ + K + + +A GS + +K + +++ + Sbjct: 180 KSFS----YKQLEIFIKNNTDDSILNNEEKVNLEDLIYSANGSPGKILKNIKM-WNELPN 234 Query: 238 SYIDLIHIP-RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 D + P + K+ +I E L DQ+I FL+ + K+ ++AK + LE Sbjct: 235 EIKDNLSFPLMNNLEILKVSKIIAEELVLDQQI---FLVNLMQKKCWETAKNKKIIKTLE 291 Query: 297 E 297 + Sbjct: 292 K 292 >gi|288554637|ref|YP_003426572.1| DNA polymerase III subunit delta' [Bacillus pseudofirmus OF4] gi|288545797|gb|ADC49680.1| DNA polymerase III subunit delta' [Bacillus pseudofirmus OF4] Length = 329 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 48/209 (22%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +N+ + + L + R+ HA LFEG +G GK + F+ A L + P Sbjct: 3 TWNELKDSQPKVVQLLQRSLEKDRLAHAYLFEGSKGTGKKQIAFQLAKSFLCKKNEGAEP 62 Query: 69 VRMC-----------------NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 +C P+ S KQ H +F Y ++GK Sbjct: 63 CLVCADCKRIDHRNHPDVHIIEPEGLS-IKKQQVEHLQKEFTYRGV----ESGK------ 111 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +V ++D D M +AAN+LLK LEEP L +L++ + Sbjct: 112 --------------------KVYIVDQADKMTASAANSLLKFLEEPTAPTLAVLMTERAS 151 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++L TI+SR + F+ L + LE+ Sbjct: 152 SVLPTIQSRSQQLSFSPLPREKFIERLEK 180 >gi|288940170|ref|YP_003442410.1| DNA polymerase III subunits gamma and tau [Allochromatium vinosum DSM 180] gi|288895542|gb|ADC61378.1| DNA polymerase III, subunits gamma and tau [Allochromatium vinosum DSM 180] Length = 549 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS ++HHA LF G +G+GK TL + + Sbjct: 5 VLARKWRPRSFDDMVGQQHVVRALSNALDRDQLHHAYLFTGTRGVGKTTLARILSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C+ +++ S D L + + K VD+ R + Sbjct: 65 EQGVGSHPCGVCS------ACREIDSGRFVDLLEVDAASRTK---------VDQTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V + ++ NALLK+LEEPP V F+L + I T+ SR Sbjct: 110 NVPYAPARARFKVYLIDEVHMFSSHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSL 189 CL + L Sbjct: 170 CLQLNLRRL 178 >gi|295702269|ref|YP_003595344.1| DNA polymerase III subunit delta' [Bacillus megaterium DSM 319] gi|294799928|gb|ADF36994.1| DNA polymerase III, delta' subunit [Bacillus megaterium DSM 319] Length = 330 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 20/193 (10%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 ++ K L R+ HA LFEG +G GK + F +A + F + PV N PC Sbjct: 14 NVLKILQNSLLKERVAHAYLFEGSKGTGKKQISFLFAKAL-----FCQNPV---NHRPC- 64 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW---RVIM 135 H + + +P + +I++ S TG ++ + Sbjct: 65 --------HECSNCRRIDSGNHPDIHLIEPAGLSIKKEQIQFLQSEFTKTGVESNKKLYI 116 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ++ VD M +AAN+LLK LEEP IL++ +L TI SRC I F SL+ L Sbjct: 117 VNHVDKMTVSAANSLLKFLEEPGNGTYAILLTENIQRLLDTIISRCQVISFRSLTPEQLA 176 Query: 196 KALEQLKIMGWDS 208 + + + + G D+ Sbjct: 177 EKIVENGLSGVDA 189 >gi|188994758|ref|YP_001929010.1| DNA polymerase III, gamma and tau subunits [Porphyromonas gingivalis ATCC 33277] gi|188594438|dbj|BAG33413.1| DNA polymerase III, gamma and tau subunits [Porphyromonas gingivalis ATCC 33277] Length = 602 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 18/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 + G E + L + HA LF G +G+GK + F A + L+ +A R Sbjct: 20 MVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAINCLERLPDGEACGRC 79 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 + C F +Q + + Y L+ + +VD+IR + ++ G + Sbjct: 80 ---ESCKAFDEQRSMNI--------YELDAASNN-----SVDDIRLLIEQANVPPQIGKY 123 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +ID V +++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 124 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRC 173 >gi|326798191|ref|YP_004316010.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21] gi|326548955|gb|ADZ77340.1| DNA polymerase III gamma/tau subunit [Sphingobacterium sp. 21] Length = 371 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 28/244 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E ++ L R+ HA LF G +G G L YA ++ Sbjct: 6 IIGQEKVKAHLINTVKENRVSHAQLFLGPEGSGSLPLAVAYAQYINCENKQENDSCGSCS 65 Query: 59 -------LQNPD--FSKAPVRMCNPDPCSPFVKQMASHALHD-FLYL-SYSLNPKTGKWR 107 + +PD FS D S F+ Q + L + +L L ++ + G + Sbjct: 66 SCRKYAKIIHPDLHFSYPFFASHKEDTASTFIDQWRNSFLRNPYLNLETWRSSLDAGNKQ 125 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I + E I LSL A ++V+++ + +++ N LLK +EEPP+K LF+L++ Sbjct: 126 ANINIAECHHIIQKLSLKAFEAPYKVLIMWLPEFLDKEG-NTLLKLIEEPPEKTLFLLVT 184 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 +L+TI SR +K N+L + +L + L + K + + I+ G+V +A+ + Sbjct: 185 QNQDQLLNTIISRTQLVKVNALDKASLAEFLVREKGVSHEKALQLAYISE-GNVQQALSL 243 Query: 228 LHYD 231 L D Sbjct: 244 LSDD 247 >gi|295395541|ref|ZP_06805735.1| DNA-directed DNA polymerase III subunit delta' [Brevibacterium mcbrellneri ATCC 49030] gi|294971560|gb|EFG47441.1| DNA-directed DNA polymerase III subunit delta' [Brevibacterium mcbrellneri ATCC 49030] Length = 397 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 18/154 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA L G G G++ +A +L PD S K+ + Sbjct: 37 MTHAWLLTGPPGSGRSNAAKAFAAALL-TPDHGAT---------LSAQAKRALAGTHESM 86 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 +S ++VI++DE+R I WRV++I+ D M +N LLK Sbjct: 87 TVISTQ--------KSVISIDEVRDIVGKAQAAPVNADWRVVIIEDADRMTERTSNVLLK 138 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++EEPP ++IL + + +L TIRSRC ++ Sbjct: 139 AIEEPPPATVWILCAPSPQDVLMTIRSRCRNVNL 172 >gi|256397500|ref|YP_003119064.1| DNA polymerase III subunit delta' [Catenulispora acidiphila DSM 44928] gi|256363726|gb|ACU77223.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] Length = 395 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 28/184 (15%) Query: 5 AFDP--VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 AF P V+ L G + I L Q M HA L G G G++T +A LQ Sbjct: 7 AFQPYGVWTD-LVGQDHISTDLVQAALGNGMTHAWLLTGPPGSGRSTAARAFA-AALQCT 64 Query: 63 DFSKAPVRMCNP-----DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + C D P V Q+A+ L I V + R Sbjct: 65 TAGEPGCGYCLGCRTVLDGTHPDVLQLATDQLS-------------------IGVADTRG 105 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + S+T ++G W+V++I+ D + A N LLK++EEP + ++IL + +L TI Sbjct: 106 LVRRSSMTPSSGRWQVLLIEDADRLTEAAGNVLLKAVEEPSPRTIWILCAPGRDDMLPTI 165 Query: 178 RSRC 181 RSRC Sbjct: 166 RSRC 169 >gi|34541094|ref|NP_905573.1| DNA polymerase III subunits gamma and tau [Porphyromonas gingivalis W83] gi|34397409|gb|AAQ66472.1| DNA polymerase III, gamma and tau subunits [Porphyromonas gingivalis W83] Length = 602 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 + G E + L + HA LF G +G+GK + F A + L+ +A R Sbjct: 20 MVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAINCLERLPDGEACGR- 78 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + C F +Q + + Y L+ + +VD+IR + ++ G + Sbjct: 79 C--ESCKAFDEQRSMNI--------YELDAASNN-----SVDDIRLLIEQANVPPQIGKY 123 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +ID V +++ A NA LK+LEEPP V+FIL + IL TI SRC Sbjct: 124 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRC 173 >gi|72160455|ref|YP_288112.1| DNA polymerase III subunits gamma and tau [Thermobifida fusca YX] gi|71914187|gb|AAZ54089.1| ATPase [Thermobifida fusca YX] Length = 692 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 81/199 (40%), Gaps = 29/199 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L Q +GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 +K P PDPC +A L P G VI VD+ Sbjct: 63 CAKGPT----PDPCGECDSCVA-------------LAPDGGGSIDVIEIDAASHGGVDDA 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R ++V +ID + R NALLK +EEPP + F+ + ++ Sbjct: 106 RDLRERAFFAPVNSRYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIG 165 Query: 176 TIRSRCLSIKFNSLSENNL 194 TIRSR F + N L Sbjct: 166 TIRSRTHHYPFRLIPPNTL 184 >gi|85708099|ref|ZP_01039165.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1] gi|85689633|gb|EAQ29636.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1] Length = 601 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+ HA L G +G+GK + R L Sbjct: 65 VLARKYRPQTFSELVGQEPMVRTLANAIERDRLAHAFLMTGVRGVGKTSTA-RLIAKALN 123 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD + P DPC F +A D + + + + TG VD++R Sbjct: 124 CVGPDGNGGPTI----DPCGVCEFCTAIAEGRHIDVIEMDAASH--TG-------VDDVR 170 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T Sbjct: 171 EIIEQVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVEKLPVT 230 Query: 177 IRSRC 181 + SR Sbjct: 231 VLSRT 235 >gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces brasiliensis DSM 5305] gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces brasiliensis DSM 5305] Length = 593 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L + R+ HA LF G +G+GK ++ A + Sbjct: 10 VLARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAYLFTGARGVGKTSMARILAKALNC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +++ + D + + + N +D+IR +R Sbjct: 70 TNSQDGNPCNQCE------LCQAISTGSDVDVMEIDGASNRG---------IDDIRSLRA 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + ++ +ID V + + A NALLK+LEEPP V F+ + + TI SR Sbjct: 115 NVGIRSMRTRVKMYIIDEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSR 174 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F+S+ + + L ++ Sbjct: 175 CQRFDFSSIETQKISERLAEI 195 >gi|257867899|ref|ZP_05647552.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874228|ref|ZP_05653881.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257876792|ref|ZP_05656445.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257801982|gb|EEV30885.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808392|gb|EEV37214.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257810958|gb|EEV39778.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 577 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L ++ HA LF G +G GK + +A + P+ N Sbjct: 22 VVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFA-KAINCPN-------QVN 73 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 74 GEPCNECDMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTQAEY 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 125 KVYIIDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINT 184 Query: 192 NNLYKALEQL 201 ++ LE + Sbjct: 185 QDIVGHLETV 194 >gi|254293230|ref|YP_003059253.1| DNA polymerase III subunits gamma and tau [Hirschia baltica ATCC 49814] gi|254041761|gb|ACT58556.1| DNA polymerase III, subunits gamma and tau [Hirschia baltica ATCC 49814] Length = 619 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 118/293 (40%), Gaps = 44/293 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P + G E + + L+ + +GR+ HA + G +G+GK T Y Sbjct: 39 VLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRIAHAFMLTGVRGVGKTTTARLLARALNY 98 Query: 55 AGHVLQNPDFSKAPV-RMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITV 112 + ++ P +PV R C Q + H D L L + +TG V Sbjct: 99 SRDGVEEPSVQLSPVGRHC----------QAIMESRHPDVLELDAA--SRTG-------V 139 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 ++R + + + ++V +ID V ++ A NALLK+LEEPP V FI + Sbjct: 140 ADMRELLDGVRYSPVNARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 199 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + T+ SRC L+ + L L E+ + + AA GS A+ +L Sbjct: 200 VPVTVLSRCQRFNLARLTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVL 259 Query: 229 HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE 281 I+ S D + + + D L D+ FD L I E Sbjct: 260 DQ---AIVQSTGDEVSV----------DAVRDMLGLADRARVFDLLDAAIAGE 299 >gi|297563735|ref|YP_003682709.1| DNA polymerase III subunits gamma and tau [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848183|gb|ADH70203.1| DNA polymerase III, subunits gamma and tau [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 732 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q SGR++HA LF G +G GK T A + ++ + Sbjct: 7 RKYRPATFGEVRGQEHVTDPLRQALRSGRINHAYLFSGPRGCGKTT----SARILARSLN 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 ++ P PDPC +A L P G VI VD+ Sbjct: 63 CAEGP----TPDPCGTCDSCVA-------------LAPDGGGSIDVIEIDAASHGGVDDA 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R + +++ +ID + R NALLK +EEPP + F+ + ++ Sbjct: 106 RDLRERAFFSPVNSRYKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIG 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TIRSR F + + L + +E L Sbjct: 166 TIRSRTHHYPFRLIPPSTLKELMEDL 191 >gi|25026765|ref|NP_736819.1| DNA polymerase III subunits gamma and tau [Corynebacterium efficiens YS-314] gi|23492044|dbj|BAC17019.1| putative DNA polymerase III gamma subunit [Corynebacterium efficiens YS-314] Length = 780 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + LS SGR++HA LF G +G GK + + + +Q Sbjct: 5 RKYRPASFDEVVGQEHVTAPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +CN +A + G VD++R +R Sbjct: 65 P--TSTPCGVCN------SCVSLAPGGPGNLDVTELDAASHNG-------VDDMRELREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NA+LK +EEPP+ ++FI + ++ TIRSR Sbjct: 110 AHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEPPEHLIFIFATTEPDKVIGTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQ 200 F L+ + LE+ Sbjct: 170 HHYPFRLLTPGAMRGLLER 188 >gi|238758396|ref|ZP_04619573.1| DNA polymerase III subunit delta' [Yersinia aldovae ATCC 35236] gi|238703300|gb|EEP95840.1| DNA polymerase III subunit delta' [Yersinia aldovae ATCC 35236] Length = 333 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HTAGRGHHALLLHSLPGNGEEALIYGLSRWLMCRQRQGEKSCGECHS------CRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L+P+ GK I V+ +R+ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLSPEKGK--NSIGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NALLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NALLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|282898410|ref|ZP_06306401.1| DNA polymerase III delta prime subunit [Raphidiopsis brookii D9] gi|281196941|gb|EFA71846.1| DNA polymerase III delta prime subunit [Raphidiopsis brookii D9] Length = 316 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 26/166 (15%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI +++IR I FLS V++I+ + M +AANALLK+LEEP + L ILI Sbjct: 105 VIRLEQIREISQFLSRPPLESVRSVVVIEQAEAMAESAANALLKTLEEPGRATL-ILIVP 163 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + +IL T+ SRC I F L ++L + L + + + + +AA GS AI Sbjct: 164 SPESILPTLVSRCQKIPFYRLDSSSLTQVLTRTGNLDILQHPEILNLAA-GSPGSAI--- 219 Query: 229 HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 L H Q++Q I ELL + +K+ +L Sbjct: 220 -------------LAH--------QQLQSINSELLEEVKKMPISYL 244 >gi|29653997|ref|NP_819689.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii RSA 493] gi|154707120|ref|YP_001424075.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii Dugway 5J108-111] gi|161829954|ref|YP_001596585.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii RSA 331] gi|29541263|gb|AAO90203.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii RSA 493] gi|154356406|gb|ABS77868.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii Dugway 5J108-111] gi|161761821|gb|ABX77463.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii RSA 331] Length = 509 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + LS +HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + C +++ D + + K V++ R + Sbjct: 65 EKGVSANPCNDC--ENC----REIDEGRFPDLFEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + T+ SR Sbjct: 110 NIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 Query: 181 CLSIKFNSL 189 CL L Sbjct: 170 CLQFHLAQL 178 >gi|227832004|ref|YP_002833711.1| DNA polymerase III, gamma and tau subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453020|gb|ACP31773.1| DNA polymerase III, gamma and tau subunit [Corynebacterium aurimucosum ATCC 700975] Length = 868 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 19/200 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGK-TSSARIMARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C +A + G V+++R +R Sbjct: 64 GP--TSTPCGVC--DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR Sbjct: 109 RAYYAPAESRYRIFIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQ 200 F L+ + LE+ Sbjct: 169 THHYPFRLLTPPAMKGLLER 188 >gi|153209003|ref|ZP_01947197.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii 'MSU Goat Q177'] gi|165920270|ref|ZP_02219542.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii RSA 334] gi|212219109|ref|YP_002305896.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii CbuK_Q154] gi|120575540|gb|EAX32164.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii 'MSU Goat Q177'] gi|165916826|gb|EDR35430.1| DNA polymerase III, subunits gamma and tau [Coxiella burnetii RSA 334] gi|212013371|gb|ACJ20751.1| DNA polymerase III subunit gamma/tau [Coxiella burnetii CbuK_Q154] Length = 509 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + LS +HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + C +++ D + + K V++ R + Sbjct: 65 EKGVSANPCNDC--ENC----REIDEGRFPDLFEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + T+ SR Sbjct: 110 NIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 Query: 181 CLSIKFNSL 189 CL L Sbjct: 170 CLQFHLAQL 178 >gi|254372517|ref|ZP_04988006.1| hypothetical protein FTCG_00079 [Francisella tularensis subsp. novicida GA99-3549] gi|151570244|gb|EDN35898.1| hypothetical protein FTCG_00079 [Francisella novicida GA99-3549] Length = 303 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|158312171|ref|YP_001504679.1| DNA polymerase III subunit delta' [Frankia sp. EAN1pec] gi|158107576|gb|ABW09773.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec] Length = 418 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V ++R + + + G WR+++I+ D +AANALLK+LEEP ++ +F+L + + Sbjct: 107 IGVRDVRALIRDAASAPSAGRWRILLIEDADRFTDSAANALLKALEEPAERAVFLLCAPS 166 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TIRSRC S+ + N+ L Sbjct: 167 VDDVLPTIRSRCRSVALRLPNPKNVADVL 195 >gi|325570730|ref|ZP_08146456.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus casseliflavus ATCC 12755] gi|325156576|gb|EGC68756.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus casseliflavus ATCC 12755] Length = 573 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L ++ HA LF G +G GK + +A + P+ N Sbjct: 18 VVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFA-KAINCPN-------QVN 69 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 70 GEPCNECDMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTQAEY 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 192 NNLYKALEQL 201 ++ LE + Sbjct: 181 QDIVGHLETV 190 >gi|330465260|ref|YP_004403003.1| DNA polymerase III subunit delta' [Verrucosispora maris AB-18-032] gi|328808231|gb|AEB42403.1| DNA polymerase III, delta prime subunit [Verrucosispora maris AB-18-032] Length = 402 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+E+R + + T + G W+V++I+ D + A NALLK++EEPP + +F+L + + Sbjct: 105 IGVNEMRALVLRAASTPSGGRWQVVIIEDADRLTEAAGNALLKAVEEPPPRTVFLLCTPS 164 Query: 170 S-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + P +S TIRSRC + + + + + L + + D R + A G V RA ++ Sbjct: 165 THPDDISVTIRSRCRVVPLVQPAADAVAEVLVRRDGIAPDVAR-WAAAATQGHVGRARRL 223 >gi|262200591|ref|YP_003271799.1| DNA polymerase III subunit delta' [Gordonia bronchialis DSM 43247] gi|262083938|gb|ACY19906.1| DNA polymerase III, delta prime subunit [Gordonia bronchialis DSM 43247] Length = 431 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 31/176 (17%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-------CSPFVKQMA 85 M H+ LF G G G++ +A + D DP C V MA Sbjct: 62 MTHSWLFTGPPGSGRSVAATCFAAALQCQAD-----------DPADIGCGQCRACVTVMA 110 Query: 86 -SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +HA D S+ P ++V +R I S TG W++++++ D + Sbjct: 111 GTHA--DV----RSIAPDG----LTLSVKSMREIVQTASRRPGTGRWQIVIVEDADRLTE 160 Query: 145 NAANALLKSLEEPPQKVLFILISHA-SPTILS-TIRSRCLSIKFNSLSENNLYKAL 198 AANALLK +EEPP + +F+L + + P +S T+RSRC + S S ++ + L Sbjct: 161 QAANALLKVVEEPPSRTVFLLCAPSVDPDDISVTLRSRCRHVALTSPSVADIERVL 216 >gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC 51142] gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC 51142] Length = 683 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 17/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I LS S R+ A LF G +G GK + A + V++ Sbjct: 19 LVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKS------LNCLAVKVPT 72 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC + +A + D + + + N TG VD IR I + Sbjct: 73 ASPCGQCEVCRAIARGSALDVIEIDAASN--TG-------VDNIREIIERSQFAPVQCRY 123 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRC 173 >gi|116073927|ref|ZP_01471189.1| DNA polymerase III subunit delta [Synechococcus sp. RS9916] gi|116069232|gb|EAU74984.1| DNA polymerase III subunit delta [Synechococcus sp. RS9916] Length = 322 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 L G L R+ A LF G G+G+ R+ VLQ + R Sbjct: 8 LVGQPQAVSLLEAALSHQRVAPAYLFAGPDGVGRRLAALRFLEGVLQGGQEDRRERRRLE 67 Query: 73 ---NPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PD P ++ + + +S P+ + +D+IR + FL+ Sbjct: 68 ARNHPDLLWVEPSYSHQGRLIPRSEAEEAGVSKRTPPQ-------LRLDQIREVSRFLAR 120 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I+ + M +AANALLK+LEEP L IL+S A +L+TIRSRC I Sbjct: 121 QPLESPRGLVVIEDPEAMAESAANALLKTLEEPGHG-LLILLSAAPERLLTTIRSRCQQI 179 Query: 185 KFNSLSENNLYKALEQL 201 F L + L +L Sbjct: 180 SFKRLDPGQMQTVLARL 196 >gi|283784888|ref|YP_003364753.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168] gi|282948342|emb|CBG87927.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168] Length = 334 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 10 DFEKLVASYQ-GGRGHHALLIQALPGMGDDALIYALSRYLLCQQPEGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + + +D +R + L A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YALLPEKGK--SALGIDAVREVGEKLYERARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I + AANALLK+LEEPP+ F L S +L+T+RSRC Sbjct: 114 IPDAALLTDAAANALLKTLEEPPEHTWFFLASREPARLLATLRSRC 159 >gi|298244237|ref|ZP_06968043.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer DSM 44963] gi|297551718|gb|EFH85583.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer DSM 44963] Length = 762 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 23/199 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + G E + + L SG + HA LF G +G GK T A + NP Sbjct: 18 VVGQEAVIQTLRNALKSGTLAHAYLFTGPRGTGKTTTARLLAKTINCLNPH--------- 68 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N +PC+ + A + F + G +D IR +R + + G ++ Sbjct: 69 NGEPCNECQQCREITAGNSFNVIEIDAASNRG-------IDSIRELREKVMVPPTGGKYK 121 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D + A NALLK+LEEPP +F++ + +L T+ SRC F + Sbjct: 122 VYILDEAHMLTVEAFNALLKTLEEPPPHAIFVMATTDVHKMLPTVLSRCQRYDFKRFTMR 181 Query: 193 NLYKAL------EQLKIMG 205 L L EQ+++ G Sbjct: 182 QLITHLSRVAQQEQVQLEG 200 >gi|87199378|ref|YP_496635.1| DNA polymerase III subunits gamma and tau [Novosphingobium aromaticivorans DSM 12444] gi|87135059|gb|ABD25801.1| DNA polymerase III, subunits gamma and tau [Novosphingobium aromaticivorans DSM 12444] Length = 573 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRM 71 L G + + + L+ R+ HA L G +G+GK + R L PD P Sbjct: 41 LIGQDAMVQTLANAIKRDRLAHAFLMTGVRGVGKTSTA-RLIAKALNCIGPDGQGGP--- 96 Query: 72 CNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 DPC + +A D + + + N TG VD++R I + A + Sbjct: 97 -TIDPCGVCEPCRAIAEGRHIDVIEMDAASN--TG-------VDDVREIIEAVRYAAVSA 146 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D V ++RNA NALLK+LEEPP V F+ + + T+ SRC Sbjct: 147 RYKIYIVDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSRC 198 >gi|187777351|ref|ZP_02993824.1| hypothetical protein CLOSPO_00903 [Clostridium sporogenes ATCC 15579] gi|187774279|gb|EDU38081.1| hypothetical protein CLOSPO_00903 [Clostridium sporogenes ATCC 15579] Length = 314 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIVKGKFSHASIIVGEDGIGKSIIAKEIAMIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G + Sbjct: 55 ---------QRRSYA--DLIEFK-PINKKS------IGIDDIRNLIEEINKKPIEGNKKA 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEIAQNAFLKTIEEPPKGVYIILLCENMEHMLDTIKSRCEIFKLNRL 152 >gi|89256881|ref|YP_514243.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica LVS] gi|115315260|ref|YP_763983.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica OSU18] gi|156503056|ref|YP_001429121.1| DNA polymerase III, subunit delta' [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009224|ref|ZP_02274155.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica FSC200] gi|187932067|ref|YP_001892052.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254368156|ref|ZP_04984176.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica 257] gi|254369755|ref|ZP_04985765.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|89144712|emb|CAJ80043.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica LVS] gi|115130159|gb|ABI83346.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134253966|gb|EBA53060.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. holarctica 257] gi|156253659|gb|ABU62165.1| hypothetical protein FTA_1690 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122714|gb|EDO66843.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|187712976|gb|ACD31273.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 303 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|158318299|ref|YP_001510807.1| DNA polymerase III subunits gamma and tau [Frankia sp. EAN1pec] gi|158113704|gb|ABW15901.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EAN1pec] Length = 855 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 33/245 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G E + + L SGR+HHA LF G +G GK + A + + Sbjct: 9 YRPATFAQVVGQEHVTEALGHALRSGRLHHAYLFSGPRGCGKTSSARILAASL----NCE 64 Query: 66 KAPVRMCNPDPCSP-----FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K P P+PC ++ +S + + S+ L VD+ R +R Sbjct: 65 KGP----TPEPCGVCDQCVSIRTGSSMDVTEIDAASHGL------------VDDARDLRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 109 RAFFAPASARFKVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSR 168 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 F + L K LE Q ++ S V A GSV ++ +L D+++ Sbjct: 169 THHYAFRLVPPGVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVL----DQLL 224 Query: 237 SSYID 241 + D Sbjct: 225 AGAGD 229 >gi|213649285|ref|ZP_03379338.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 172 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 15/167 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLAT 156 >gi|167470269|ref|ZP_02334973.1| DNA polymerase III subunit delta' [Yersinia pestis FV-1] Length = 340 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 18 HSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECH------SCRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ Y L P+ GK + I V+ +R++ L A G +V+ + + + AA Sbjct: 72 NHPDW----YVLTPEKGK--SSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 NA LK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 126 NAGLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|160934885|ref|ZP_02082271.1| hypothetical protein CLOLEP_03760 [Clostridium leptum DSM 753] gi|156866338|gb|EDO59710.1| hypothetical protein CLOLEP_03760 [Clostridium leptum DSM 753] Length = 266 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V+E+R+IR ++ N +V ++D D M A NALLK LEEPP V+F+L A+ Sbjct: 71 VEEVRQIRDSAAVMPNEAQAKVYILDGADHMTEQAQNALLKVLEEPPSYVIFLLTCGAAS 130 Query: 172 TILSTIRSR 180 ++L T+RSR Sbjct: 131 SLLPTVRSR 139 >gi|303245250|ref|ZP_07331534.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio fructosovorans JJ] gi|302493099|gb|EFL52961.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio fructosovorans JJ] Length = 598 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + I++ LS+ ++ A LF G +G+GK TL A + + P +C+ Sbjct: 20 GQDAIKRILSRAAAEDKIAPAYLFSGTRGVGKTTLARVLAKALNCESAPTAEPCNVCS-- 77 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 +Q+ + D + + + + K V++ R+++ + ++V + Sbjct: 78 ----QCRQITAGVSPDVIEIDAATHGK---------VEDARKLKEDVGYAPLQSRYKVFI 124 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 ID ++ A NALLK+LEEPP +V FIL + + +TI SRC F L++ L Sbjct: 125 IDEAHMLSTAAFNALLKTLEEPPARVTFILATTEAHKFPATIISRCQHFLFKRLAQPEL 183 >gi|319654966|ref|ZP_08009040.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2] gi|317393391|gb|EFV74155.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2] Length = 335 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 16/176 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEG +G GK R A +L F P+ P K++ S D Sbjct: 27 RLAHAYLFEGMKGTGK-----REASMLLAKSRFCLEPLDGYVPCETCSNCKRINSGNHPD 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L P I +I+ ++ S T ++ +I D M NAAN+LL Sbjct: 82 V----HILEPDG----LSIKKSQIQSLQEEFSKTGVESKRKLYVIVHADRMTVNAANSLL 133 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 K LEEP + +LI+ S +L TI SRC +I F LS + ++QLK G D Sbjct: 134 KFLEEPHAETTAVLITEQSQQMLPTILSRCQTISFKPLSPAEM---IQQLKNNGVD 186 >gi|56707602|ref|YP_169498.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670073|ref|YP_666630.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis FSC198] gi|134302462|ref|YP_001122432.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456673|ref|ZP_03665146.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370120|ref|ZP_04986126.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874423|ref|ZP_05247133.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|54113891|gb|AAV29579.1| NT02FT1075 [synthetic construct] gi|56604094|emb|CAG45093.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320406|emb|CAL08476.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis FSC198] gi|134050239|gb|ABO47310.1| putative DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568364|gb|EDN34018.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840422|gb|EET18858.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|282158760|gb|ADA78151.1| putative DNA polymerase III, delta prime subunit [Francisella tularensis subsp. tularensis NE061598] Length = 303 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB 1003] gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB 1003] Length = 589 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G E + + L + + R+ A + G +G GK T A G Sbjct: 16 VLARKYRPATFADLIGQEAMVRTLKNAFAASRIAQAFIMTGIRGTGKTTTARIIAKGLNC 75 Query: 60 QNPDFSKAPVRMCNPDPC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + +A D L + + +TG V +IR Sbjct: 76 IGPDGTGQP----TTEPCLVCEHCRAIAEGRHVDVLEMDAA--SRTG-------VGDIRE 122 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I ++ A + ++V +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 123 IIESVNYRAASARYKVYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 182 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC + N+L K + + + AA GSV A+ +L Sbjct: 183 LSRCQRFDLRRIEPEVMINHLSKVATKENAQIAEDALALITRAAEGSVRDAMSLL 237 >gi|328956232|ref|YP_004373565.1| DNA polymerase III, subunits gamma and tau [Coriobacterium glomerans PW2] gi|328456556|gb|AEB07750.1| DNA polymerase III, subunits gamma and tau [Coriobacterium glomerans PW2] Length = 731 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 15/189 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNP 62 R + P+ + G + + L GR HA LF G +G GK T+ A +L + Sbjct: 6 RTYRPLTFDSVVGQDHVVSTLEHAIAEGRCSHAYLFCGPRGTGKTTMARILAKALLCERS 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYF 121 + S C PD +A D L + +TG VD +R I Sbjct: 66 EGSGG----CMPDGTCAECSLIADGTHPDVYELDAA--SRTG-------VDNVREEIIGS 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++ +ID V + A NALLK+LEEPP V+F+L + I TI SRC Sbjct: 113 VNFAPVRGSHKIYIIDEVHMLTTAAFNALLKTLEEPPAHVVFVLCTTDPHKIPETILSRC 172 Query: 182 LSIKFNSLS 190 F +S Sbjct: 173 QRFDFRRIS 181 >gi|62262230|gb|AAX78053.1| unknown protein [synthetic construct] Length = 338 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 98 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 157 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 158 YSDVLATVKSRSLVYDIKF 176 >gi|118497150|ref|YP_898200.1| DNA polymerase III, delta prime subunit [Francisella tularensis subsp. novicida U112] gi|194323448|ref|ZP_03057225.1| hypothetical protein FTE_1609 [Francisella tularensis subsp. novicida FTE] gi|208778943|ref|ZP_03246289.1| hypothetical protein FTG_1235 [Francisella novicida FTG] gi|118423056|gb|ABK89446.1| DNA polymerase III, delta prime subunit [Francisella novicida U112] gi|194322303|gb|EDX19784.1| hypothetical protein FTE_1609 [Francisella tularensis subsp. novicida FTE] gi|208744743|gb|EDZ91041.1| hypothetical protein FTG_1235 [Francisella novicida FTG] Length = 303 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|328676619|gb|AEB27489.1| DNA polymerase III delta prime subunit [Francisella cf. novicida Fx1] Length = 303 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I +D +N +AANALLK+LEEP Q F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides ATCC 17029] gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides ATCC 17029] Length = 580 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ HA + G +G+GK T A G Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPV-RMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P C +PC + +A D + + + +TG V +IR Sbjct: 71 VGPDGTGGPTTEPCGQCEPC----RAIAEGRHVDVMEMDAA--SRTG-------VGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SRC + + L ++ G + RD + + AA GSV A+ ++ Sbjct: 178 LSRCQRFDLKRIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM 232 >gi|326772516|ref|ZP_08231800.1| DNA polymerase III, delta' subunit [Actinomyces viscosus C505] gi|326637148|gb|EGE38050.1| DNA polymerase III, delta' subunit [Actinomyces viscosus C505] Length = 332 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 13/116 (11%) Query: 67 APVRMCNPDPCSPFVKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 PV C C P MA SH D + L+ + +IT++E++ + Sbjct: 5 GPVPGCGQ--CKPCRDVMAGSHP--DVVRLATE--------KLIITMEEVKTLIGEAQRR 52 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TG WRVI+++ D M N LLKS+EEPP + +++L + ++ +L TIRSRC Sbjct: 53 PWTGRWRVILVEDADRMAERTTNVLLKSIEEPPPQTVWLLCTPSADDVLPTIRSRC 108 >gi|238789107|ref|ZP_04632896.1| DNA polymerase III subunit delta' [Yersinia frederiksenii ATCC 33641] gi|238722871|gb|EEQ14522.1| DNA polymerase III subunit delta' [Yersinia frederiksenii ATCC 33641] Length = 337 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 AGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCGECH------SCRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P GK + I V+ +R+ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLTPDKGK--SSIGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|332184304|gb|AEE26558.1| DNA polymerase III delta prime subunit [Francisella cf. novicida 3523] Length = 303 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I+ +D +N +AANALLK+LEEP + F++ + Sbjct: 72 IKVAEIKKIIKNCELTAHNNLAKIIIIEELDLLNESAANALLKTLEEPTKNTFFLMFTRN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 +L+T++SR L IKF Sbjct: 132 YSDVLATVKSRSLVYDIKF 150 >gi|184199929|ref|YP_001854136.1| DNA polymerase III tau subunit [Kocuria rhizophila DC2201] gi|183580159|dbj|BAG28630.1| DNA polymerase III gamma/tau subunit [Kocuria rhizophila DC2201] Length = 1264 Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 15/199 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + + L R++HA LF G +G GK T R L + Sbjct: 7 RRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSA-RILARCLNCAE 65 Query: 64 FSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 A P C + C + A SL+ + VD R +R Sbjct: 66 GPTATPCGRC--ESCRDLARDGAG-----------SLDVIEMDAASHGGVDHARDLRERA 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +++ +ID + R NALLK +EEPP+ V FI + +L+TIRSR Sbjct: 113 TFAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTH 172 Query: 183 SIKFNSLSENNLYKALEQL 201 F + L + LEQL Sbjct: 173 HYPFRLVPPEPLMRYLEQL 191 >gi|187735118|ref|YP_001877230.1| DNA polymerase III delta' subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425170|gb|ACD04449.1| DNA polymerase III delta' subunit [Akkermansia muciniphila ATCC BAA-835] Length = 322 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 PK+ R I D+IR + FL A G W++ + + MN AANA LK+LEEPP + Sbjct: 67 PKSKSRR--ILRDDIRAVEPFLQQRAAEGKWKIAVFMDAERMNDEAANAFLKTLEEPPGQ 124 Query: 161 VLFILISHASPTILSTIRSRCLSIKF 186 L IL + +L TI SRC+ + Sbjct: 125 CLLILSTSQPDQLLQTIISRCVRVNL 150 >gi|168244270|ref|ZP_02669202.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449840|ref|YP_002045200.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408144|gb|ACF68363.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336734|gb|EDZ23498.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 334 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F+L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFLLASPEPARLLATLRSRC 159 >gi|116515222|ref|YP_802851.1| DNA polymerase III, g and t subunits [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257076|gb|ABJ90758.1| DNA polymerase III, g and t subunits [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 368 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P ++ GH+ K + ++H + L G G+GK T+ A + Sbjct: 5 ILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C C K DF+ L + K VD+I+ + Sbjct: 65 KIGITSIPCRKC--KNCLSLEKG----KFLDFIELDAASKTK---------VDDIKIMLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V +++++ NALLK LEEPP+ + + + I TI SR Sbjct: 110 TTKYAPMCGRFKIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL IK + ++ +N+Y L Sbjct: 170 CLHIKLSYITLHNIYNFL 187 >gi|300790591|ref|YP_003770882.1| DNA polymerase III subunit delta' [Amycolatopsis mediterranei U32] gi|299800105|gb|ADJ50480.1| DNA polymerase III subunit delta' [Amycolatopsis mediterranei U32] Length = 401 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 19/160 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G M HA L G G G++ +A LQ + D C MA Sbjct: 42 GAMTHAWLLTGPPGSGRSVAARTFAA-ALQCSTGTGC-------DACPGCHTTMAGTHAD 93 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L + L+ I+V E+R + + TG W+V++I+ D + A+NAL Sbjct: 94 VRLVVPEGLS---------ISVAEMRALVQAAARRPTTGKWQVVIIEDADRLTEGASNAL 144 Query: 151 LKSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNS 188 LK++EEPP + +F+L + + P +S TIRSRC + + Sbjct: 145 LKAVEEPPDRTVFLLCAPSDHPDDVSVTIRSRCRLVTLRT 184 >gi|71278908|ref|YP_269023.1| DNA polymerase III, delta prime subunit [Colwellia psychrerythraea 34H] gi|71144648|gb|AAZ25121.1| DNA polymerase III, delta prime subunit [Colwellia psychrerythraea 34H] Length = 331 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 42/262 (16%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLG-FRYAGHVLQNP-DFSKAPVRMCNPDPCSP-- 79 LS+ Y + HA++ +G +G G+ L + + QNP + A + C Sbjct: 12 LSRQYQQDTLAHAIIIQGIEGAGQGALAKWLIELLICQNPLSTTNAAGTETISEACGQCK 71 Query: 80 --FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 +K+ ++ H L S N G VD+IRR FL TA+ G + I+I Sbjct: 72 ACLLKKSDNYPDHLLLK---SENKTLG-------VDDIRRGNAFLEKTAHLGKVKTILIP 121 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 M AANALLK+LEEP +LI+ ++L TI SRC + L Sbjct: 122 QAQVMTIAAANALLKTLEEPSANSYIVLITDDLDSLLPTIISRCAVYAIRPMIGEAL--- 178 Query: 198 LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQ 257 L QLK+ S V++++ + ++YI+L H+P + Sbjct: 179 LAQLKV----SNLGDVQLSSSAPLTNKAN---------DTAYINLSHLP----------E 215 Query: 258 IADELLSQDQKIAFDFLIEFIL 279 + D+++ Q+ ++ +L++++L Sbjct: 216 LTDKIVHQEFQVFNQYLLDYLL 237 >gi|332109433|gb|EGJ10356.1| DNA polymerase III, delta prime subunit [Rubrivivax benzoatilyticus JA2] Length = 339 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DEIR +++ T + G +V+++ P + +N AANALLK+LEEPP +L + Sbjct: 117 IRIDEIRHAIDWVARTTSRGRGKVVVLHPAEAINLQAANALLKTLEEPPPGTRLLLGAGD 176 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 +L T+RSRC + +L+ +AL+ L G Sbjct: 177 PQHLLPTVRSRCHRV---ALAAPPTAQALDWLAGQG 209 >gi|167465290|ref|ZP_02330379.1| DNA polymerase III subunit delta' [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381214|ref|ZP_08055217.1| DNA polymerase III subunit delta'-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154790|gb|EFX47061.1| DNA polymerase III subunit delta'-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 321 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 19/189 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPV 69 Q + G ++ L ++ HA +F G G G+ + +A + L S Sbjct: 4 QSIRGQATAKRMLQNSLREDKISHAYIFSGPVGTGRKQMAIEFAKAIYCLNGDGDSCGEC 63 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R C + H H LY+ + P I +D+IR ++ S + + Sbjct: 64 REC----------RKVEHGNHPDLYM---IEPDGAS----IKIDQIRELQKEFSYKSASS 106 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++ ++ + M AAN+LLK LEEP +V+ ILI+ +L TI+SR I F + Sbjct: 107 STKIYIVSEAETMTTQAANSLLKFLEEPVSQVVAILITENGHALLPTIQSRAQWISFTPM 166 Query: 190 SENNLYKAL 198 + + L Sbjct: 167 PRAEMTRIL 175 >gi|319760438|ref|YP_004124376.1| DNA polymerase III subunit gamma and tau [Candidatus Blochmannia vafer str. BVAF] gi|318039152|gb|ADV33702.1| DNA polymerase III subunit gamma and tau [Candidatus Blochmannia vafer str. BVAF] Length = 722 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G I K + + + R+HHA + G +G GK T+ +A + F+ Sbjct: 17 EIVGQAHIIKAMIRSFILNRIHHAYILSGTRGSGKTTIARLFAKGLNCEIQFA------S 70 Query: 73 NPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 N D C + S D + + + K V+E R + + Sbjct: 71 NNDVCGQCKNCLDIESGCFIDLIEIDAASRSK---------VEETREFLDNMQYAPSQSQ 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID ++R++ NALLK+LEEPP V FILI+ + TI SRCL LS Sbjct: 122 FKIYLIDEAHMLSRHSFNALLKTLEEPPHHVKFILITTDHQKLPETILSRCLQFYLKPLS 181 Query: 191 ENNLYKALE 199 + + L+ Sbjct: 182 TSQITTQLQ 190 >gi|119962705|ref|YP_946681.1| DNA polymerase III subunit delta' [Arthrobacter aurescens TC1] gi|119949564|gb|ABM08475.1| putative DNA polymerase III, delta' subunit [Arthrobacter aurescens TC1] Length = 383 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HA LF G G G++ +A + N + +R C C+ A H Sbjct: 27 LTHAWLFTGPPGSGRSNAAKAFAAAL--NCEQDDVTMRGCGE--CA---------ACHTI 73 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L ++S + IT+DE R + TG WR+I+++ D M N LLK Sbjct: 74 LGETHSDVTFVRTEKVTITIDEARELVSKAGDRPATGRWRIIVVEDADRMAERTTNVLLK 133 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++EEP + +++L + + +L TIRSRC + Sbjct: 134 AIEEPTPRTIWMLCAPSPADVLVTIRSRCRPVSL 167 >gi|83313202|ref|YP_423466.1| DNA polymerase III subunits gamma and tau [Magnetospirillum magneticum AMB-1] gi|82948043|dbj|BAE52907.1| DNA polymerase III, gamma/tau subunits [Magnetospirillum magneticum AMB-1] Length = 599 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 18/205 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+ HA + G +G+GK T R L Sbjct: 15 VLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTA-RIIARALN 73 Query: 61 --NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 D P DPC + +A D L + + +TG V++IR Sbjct: 74 CVGLDGKGGPTI----DPCGQCEHCRAIAEDRHVDILEMDAA--SRTG-------VNDIR 120 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + +++ +ID V ++ A NALLK+LEEPP+ V F+ + I T Sbjct: 121 EIIEGVRYRPTSARFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPVT 180 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRC + L K E + Sbjct: 181 VLSRCQRFDLRRVEMEVLAKHFESI 205 >gi|332185894|ref|ZP_08387641.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17] gi|332014252|gb|EGI56310.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17] Length = 559 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + R L Sbjct: 21 VLARKYRPQTFAALIGQDAMVQTLGNAIKRDRLAHAFLMTGVRGVGKTSTA-RLIAKALN 79 Query: 61 --NPDFSKAP-VRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD + P ++ C +PC + +A D + + + + TG VD++R Sbjct: 80 CVGPDGTGGPTIQPCGQCEPC----RAIAEGRHIDVIEMDAASH--TG-------VDDVR 126 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I A + +++ ++D V +++NA NALLK+LEEPP V F+ + + T Sbjct: 127 EIIEASRYAAVSARFKIYIVDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPIT 186 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 + SRC ++ + L + + D V AA GS + IL Sbjct: 187 VLSRCQRFDLRRITADKLAAHFADICVKEGVTAEDEALMLVARAAEGSARDGLSIL---- 242 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 D+ I ++ DL A+++M ++D +D L+ +L A A+L Sbjct: 243 DQAI-AHADLEGGGVTASAVREMLGLSDRGAVRD-------LLGLVLNGDGAGA-LASLR 293 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNL 320 Q + + SL++ VH ++ + Sbjct: 294 RQYDYGVDPQSVLRSLLETVHGITLTKV 321 >gi|161503707|ref|YP_001570819.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865054|gb|ABX21677.1| hypothetical protein SARI_01791 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 334 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQSLPGMGDEALSYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDSVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|228989240|ref|ZP_04149233.1| DNA polymerase III, delta prime subunit [Bacillus pseudomycoides DSM 12442] gi|228770450|gb|EEM19021.1| DNA polymerase III, delta prime subunit [Bacillus pseudomycoides DSM 12442] Length = 310 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA L EG +G GK + A L P C C H Sbjct: 9 GRISHAYLLEGAKGTGKYETAIQMAKSFLCKQRNGVEPCHTCTN--CRRI-----DSGNH 61 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L++ + P I +I ++ S T +V +I+ D M NAAN L Sbjct: 62 PNLHI---VRPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANTL 114 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LK LEEP IL++ S IL+TI SRC + F LS +L + L+ Sbjct: 115 LKFLEEPSSNTTAILLTEQSHQILNTILSRCQVVTFRPLSTESLIERLQ 163 >gi|227496777|ref|ZP_03927048.1| DNA polymerase III subunit delta' [Actinomyces urogenitalis DSM 15434] gi|226833716|gb|EEH66099.1| DNA polymerase III subunit delta' [Actinomyces urogenitalis DSM 15434] Length = 359 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 46/73 (63%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +IT++E++ + TG WRVI+++ D M N LLKS+EEPP + ++IL + Sbjct: 66 LITMEEVKELIGEAQRRPWTGRWRVILVEDADRMVERTTNVLLKSIEEPPPQTVWILCTP 125 Query: 169 ASPTILSTIRSRC 181 ++ +L TIRSRC Sbjct: 126 SADDVLPTIRSRC 138 >gi|330860687|emb|CBX70981.1| DNA polymerase III subunit delta' [Yersinia enterocolitica W22703] Length = 347 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 32 AGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCGECHS------CRLMLAGNH 85 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P+ GK + + V+ +R+ L A G +V+ + + + AANA Sbjct: 86 PDW----YVLTPEKGK--SSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAANA 139 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 140 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 171 >gi|82777288|ref|YP_403637.1| DNA polymerase III subunit delta' [Shigella dysenteriae Sd197] gi|309788171|ref|ZP_07682777.1| DNA polymerase III subunit delta' [Shigella dysenteriae 1617] gi|81241436|gb|ABB62146.1| DNA polymerase III, delta prime subunit [Shigella dysenteriae Sd197] gi|308924023|gb|EFP69524.1| DNA polymerase III subunit delta' [Shigella dysenteriae 1617] Length = 334 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--STLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|22298675|ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] Length = 603 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G I L+Q R+ A LF G +G GK T R L SK Sbjct: 18 LVGQGAIATTLTQALLKERIAPAYLFCGPRGTGK-TSSARILAKSLNCLRSSKP-----T 71 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PDPC +Q+A+ D + + + + TG VD IR + + Sbjct: 72 PDPCGQCEVCRQVANGTSLDVIEIDAASH--TG-------VDNIRELIEKAQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ +A NALLK+LEEPP +V+FIL + +L TI SRC F + Sbjct: 123 KVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPL 182 Query: 192 NNLYKALEQL 201 + L+ + Sbjct: 183 GEMVAHLQNI 192 >gi|116491393|ref|YP_810937.1| DNA polymerase III, gamma/tau subunit [Oenococcus oeni PSU-1] gi|116092118|gb|ABJ57272.1| DNA polymerase III, gamma/tau subunit [Oenococcus oeni PSU-1] Length = 594 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 28/196 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G I + L S ++ HA LF G +G GK ++ +A + P+ Sbjct: 7 RQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREIEGIPE 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + D + + + N G VDEIR +R + Sbjct: 67 DTD-------------------RESFSDIIEIDAASN--NG-------VDEIRNLRDAAN 98 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK++EEPP +V FIL + I +TI SR Sbjct: 99 YAPIEYQFKIYIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQR 158 Query: 184 IKFNSLSENNLYKALE 199 F+ + + + K LE Sbjct: 159 FDFHRIDVDQIVKRLE 174 >gi|256826612|ref|YP_003150571.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM 15641] gi|256582755|gb|ACU93889.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM 15641] Length = 900 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 16/196 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E IE+ L ++ HA LF G +G GK T+ A +L Sbjct: 7 RKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAKALL---- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFL 122 K P PD +++A D L + +TG V+ +R I + Sbjct: 63 CEKGPT--SEPDGSCRECQEIAEGVHPDVYELDAAS--RTG-------VENVREEIIGRV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 112 NFAPTRGKAKIYIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQ 171 Query: 183 SIKFNSLSENNLYKAL 198 F+ LS + L Sbjct: 172 RFDFHRLSNEEIVSRL 187 >gi|239946854|ref|ZP_04698607.1| DNA polymerase III subunit delta' [Rickettsia endosymbiont of Ixodes scapularis] gi|239921130|gb|EER21154.1| DNA polymerase III subunit delta' [Rickettsia endosymbiont of Ixodes scapularis] Length = 264 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I D MN NAAN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQDFLSKTSAISGYKVAVIYSADLMNLNAANSCLKILEDAPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNS 188 + +I+STIRSRC + S Sbjct: 130 AASIISTIRSRCFKVNVRS 148 >gi|257059952|ref|YP_003137840.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8802] gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8802] Length = 650 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 13/168 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I L+ + R+ A LF G +G GK T R L FS C Sbjct: 19 LVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGK-TSSARILAKSLNCLAFSDPTATPCG 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + +A + D + + + N TG VD IR I ++V Sbjct: 78 K--CE-VCRAIARGSALDVIEIDAASN--TG-------VDNIREIIERAQFAPVQCRYKV 125 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 126 YVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRC 173 >gi|145799|gb|AAA23708.1| DNA polymerase III delta prime subunit [Escherichia coli] Length = 334 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + VD +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGVDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|218700398|ref|YP_002408027.1| DNA polymerase III subunit delta' [Escherichia coli IAI39] gi|293409464|ref|ZP_06653040.1| DNA polymerase III subunit delta [Escherichia coli B354] gi|300938666|ref|ZP_07153393.1| DNA polymerase III, delta' subunit [Escherichia coli MS 21-1] gi|218370384|emb|CAR18189.1| DNA polymerase III, delta prime subunit [Escherichia coli IAI39] gi|284920924|emb|CBG33987.1| DNA polymerase III, delta' subunit [Escherichia coli 042] gi|291469932|gb|EFF12416.1| DNA polymerase III subunit delta [Escherichia coli B354] gi|300456382|gb|EFK19875.1| DNA polymerase III, delta' subunit [Escherichia coli MS 21-1] Length = 334 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G+ L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGEDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|289706871|ref|ZP_06503212.1| DNA polymerase III, delta' subunit [Micrococcus luteus SK58] gi|289556421|gb|EFD49771.1| DNA polymerase III, delta' subunit [Micrococcus luteus SK58] Length = 398 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 14/180 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 PV+ L G E L + R HA +F G G G++T +A LQ + + Sbjct: 9 PVFAD-LAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFA-AALQC-EVADP 65 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 R C HA L ++ ++++R + T Sbjct: 66 AARGCG-----------ECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPA 114 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 TG WR+ +++ D M A N LLK++EEPP + +++L + + +L T+RSRC I + Sbjct: 115 TGRWRIFLMEDADRMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLS 174 >gi|221233207|ref|YP_002515643.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus NA1000] gi|220962379|gb|ACL93735.1| DNA polymerase III subunit gamma/tau [Caulobacter crescentus NA1000] Length = 623 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 73 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 132 Query: 61 NPDFSKAPVRMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 D K P + C ++ H D L L + K VDE+R + Sbjct: 133 ETDTVKGPSVDLTTEGYHCRSIIE--GRH--MDVLELDAASRTK---------VDEMREL 179 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V ++ A NALLK+LEEPP FI + + TI Sbjct: 180 LDGVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTIL 239 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SRC + + L K +++ G + D + + AA GSV + +L Sbjct: 240 SRCQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLL 293 >gi|325520826|gb|EGC99826.1| DNA polymerase III subunit delta' [Burkholderia sp. TJI49] Length = 176 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 23/152 (15%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQN-----PDFSKAPVRMC----------NPDPCSP 79 HALL G+ GIGK ++A H+ Q P + AP C +PD Sbjct: 22 HALLLHGQAGIGK----LQFAQHLAQGFLCEAPQPNGAPCGTCAACTWFAQGNHPDYRIV 77 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIM 135 + +A A + + GK I ++++R + F + ++ G RV++ Sbjct: 78 LPEALAGEAPGAADDAKPADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 + P + +N A+NALLK+LEEPP V+F+L+S Sbjct: 138 LYPAEALNVAASNALLKTLEEPPPGVVFVLVS 169 >gi|118469964|ref|YP_890504.1| DNA polymerase III subunits gamma and tau [Mycobacterium smegmatis str. MC2 155] gi|118171251|gb|ABK72147.1| DNA polymerase III gamma/tau subunit [Mycobacterium smegmatis str. MC2 155] Length = 665 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK + A + + Sbjct: 5 RKYRPATFSEVVGQEHVTEPLCTALTAGRINHAYLFSGPRGCGKTSSARILARSLNCDQG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C + D + L + + VD+ R +R Sbjct: 65 PTPTPCGVC--DSCVALAPNGPGNV--DVVELDAASHGG---------VDDTRELRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +R+ ++D + NALLK +EEPP ++F+ + +L TIRSR Sbjct: 112 YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPDHLIFVFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNLYKALEQL 201 F L+ + LE++ Sbjct: 172 YPFRLLAPRTMRPLLERI 189 >gi|326573102|gb|EGE23071.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis CO72] Length = 323 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + RM H LL G++GIGK +R+ ++L K C +++ Sbjct: 24 LTGQFIEQRMPHGLLAAGQKGIGKREFVWRFVAYLLC---LEKNQYGACGHCQSCQWLR- 79 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H D L L P+ I +D+IR ++ + S T G +VI++D D + Sbjct: 80 AGTHP--DLLVL-----PQGDS----IKIDDIRLLQEY-SQTKGHGV-KVIVLDGADTLT 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 AANA LK+LEEP V ILI++ +L TI+SR ++ + Sbjct: 127 LGAANAFLKTLEEPRDGVFLILITNHPSRLLPTIKSRVQTMPLS 170 >gi|88856428|ref|ZP_01131086.1| DNA polymerase III, delta prime subunit [marine actinobacterium PHSC20C1] gi|88814295|gb|EAR24159.1| DNA polymerase III, delta prime subunit [marine actinobacterium PHSC20C1] Length = 388 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 20/146 (13%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQN-PDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ L G G G++ + + +A +L D ++ V +KQ+ + D Sbjct: 34 MTHSWLITGPPGSGRSNMAYAFAATLLGTRGDETEQSV-----------LKQVMARTHPD 82 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 LS R +I++DE+R++ + + G++RV++I+ D M +N LL Sbjct: 83 LGVLSTE--------RVIISIDEVRKLVATSQFSPSVGHYRVMIIEDADRMTERTSNVLL 134 Query: 152 KSLEEPPQKVLFILISHASPTILSTI 177 K+LEEPP + ++IL + + ++ TI Sbjct: 135 KALEEPPPRTVWILCAPSEADLIPTI 160 >gi|323967040|gb|EGB62466.1| DNA polymerase III [Escherichia coli M863] gi|323976528|gb|EGB71616.1| DNA polymerase III [Escherichia coli TW10509] gi|327253497|gb|EGE65135.1| DNA polymerase III subunit delta' [Escherichia coli STEC_7v] Length = 334 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G+ L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGEDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|317047713|ref|YP_004115361.1| DNA polymerase III subunit delta' [Pantoea sp. At-9b] gi|316949330|gb|ADU68805.1| DNA polymerase III, delta prime subunit [Pantoea sp. At-9b] Length = 329 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 SG+ HHALL + +G+G L + + ++ Q P+ K+ C+ + M + Sbjct: 20 SGQAHHALLIQAIEGMGDDALVWGVSRWLMCQQPEGLKS-CGHCH------GCQLMQAQT 72 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ Y L + GK + + +D +R + L A G +V+ + + A N Sbjct: 73 HPDW----YRLEAEKGK--SSLGIDAVRDVTEKLYHFAQQGGAKVVWLPDAAQLTEAAGN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ALLK+LEEPP F L + +L+T+RSRC++ + E Sbjct: 127 ALLKTLEEPPANTWFFLSTREPSRLLATLRSRCMTWHLSPPDE 169 >gi|16129062|ref|NP_415617.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107945|ref|AP_001725.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K-12 substr. W3110] gi|170080750|ref|YP_001730070.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K-12 substr. DH10B] gi|238900353|ref|YP_002926149.1| DNA polymerase III, delta prime subunit [Escherichia coli BW2952] gi|256023204|ref|ZP_05437069.1| DNA polymerase III subunit delta' [Escherichia sp. 4_1_40B] gi|300948685|ref|ZP_07162765.1| DNA polymerase III, delta' subunit [Escherichia coli MS 116-1] gi|300956238|ref|ZP_07168548.1| DNA polymerase III, delta' subunit [Escherichia coli MS 175-1] gi|301029598|ref|ZP_07192673.1| DNA polymerase III, delta' subunit [Escherichia coli MS 196-1] gi|301644513|ref|ZP_07244507.1| DNA polymerase III, delta' subunit [Escherichia coli MS 146-1] gi|307137734|ref|ZP_07497090.1| DNA polymerase III subunit delta' [Escherichia coli H736] gi|331641642|ref|ZP_08342777.1| DNA polymerase III subunit delta' [Escherichia coli H736] gi|2506368|sp|P28631|HOLB_ECOLI RecName: Full=DNA polymerase III subunit delta' gi|15988196|pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|61679674|pdb|1XXI|E Chain E, Adp Bound E. Coli Clamp Loader Complex gi|61679679|pdb|1XXI|J Chain J, Adp Bound E. Coli Clamp Loader Complex gi|157829695|pdb|1A5T|A Chain A, Crystal Structure Of The Delta Prime Subunit Of The Clamp- Loader Complex Of Escherichia Coli Dna Polymerase Iii gi|238537890|pdb|3GLF|E Chain E, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537895|pdb|3GLF|J Chain J, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537904|pdb|3GLG|E Chain E, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537909|pdb|3GLG|J Chain J, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537918|pdb|3GLH|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537923|pdb|3GLH|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537928|pdb|3GLH|O Chain O, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537933|pdb|3GLI|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537938|pdb|3GLI|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|145783|gb|AAA23696.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|1651540|dbj|BAA35906.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K12 substr. W3110] gi|1787341|gb|AAC74183.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K-12 substr. MG1655] gi|169888585|gb|ACB02292.1| DNA polymerase III, delta prime subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860833|gb|ACR62831.1| DNA polymerase III, delta prime subunit [Escherichia coli BW2952] gi|260449762|gb|ACX40184.1| DNA polymerase III, delta prime subunit [Escherichia coli DH1] gi|299877520|gb|EFI85731.1| DNA polymerase III, delta' subunit [Escherichia coli MS 196-1] gi|300316931|gb|EFJ66715.1| DNA polymerase III, delta' subunit [Escherichia coli MS 175-1] gi|300451824|gb|EFK15444.1| DNA polymerase III, delta' subunit [Escherichia coli MS 116-1] gi|301077145|gb|EFK91951.1| DNA polymerase III, delta' subunit [Escherichia coli MS 146-1] gi|309701371|emb|CBJ00672.1| DNA polymerase III, delta' subunit [Escherichia coli ETEC H10407] gi|315135731|dbj|BAJ42890.1| DNA polymerase III subunit delta' [Escherichia coli DH1] gi|315618270|gb|EFU98860.1| DNA polymerase III subunit delta' [Escherichia coli 3431] gi|331038440|gb|EGI10660.1| DNA polymerase III subunit delta' [Escherichia coli H736] Length = 334 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + VD +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGVDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|239916912|ref|YP_002956470.1| DNA polymerase III, delta' subunit [Micrococcus luteus NCTC 2665] gi|281414633|ref|ZP_06246375.1| DNA polymerase III, delta' subunit [Micrococcus luteus NCTC 2665] gi|239838119|gb|ACS29916.1| DNA polymerase III, delta' subunit [Micrococcus luteus NCTC 2665] Length = 396 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 13/174 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E L + + R HA +F G G G++T +A LQ + + R C Sbjct: 12 LAGQEAAVAQLRRAAAADRPTHAWMFTGPPGSGRSTAARAFA-AALQC-EVADPAARGCG 69 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 HA L ++ ++++R + T TG WR+ Sbjct: 70 -----------ECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRI 118 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++ D M A N LLK++EEPP + +++L + + +L T+RSRC I + Sbjct: 119 FLMEDADRMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLS 172 >gi|322380101|ref|ZP_08054355.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5] gi|321147471|gb|EFX42117.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5] Length = 470 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + L G E + LS R+ HA LF G +G GK + +A + S Sbjct: 14 YRPKHFKDLIGQESVSNTLSLALDHARLAHAYLFSGLRGSGKTSTARIFARALQCEKGPS 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P D C + + L D + + + N + R +I + +Y SL Sbjct: 74 SIPC-----DSCLNCLDALKDRHL-DIIEIDGASNRRIEDVRNII-----EQTKYKPSL- 121 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ MID + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 122 ---GRFKIFMIDEAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRTQHFH 178 Query: 186 FNSLSENNLYKALEQL 201 F ++ + + L+ + Sbjct: 179 FKKIAPKAIVQRLQSI 194 >gi|242371686|ref|ZP_04817260.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis M23864:W1] gi|242350635|gb|EES42236.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis M23864:W1] Length = 308 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C+ + Sbjct: 2 DEQQQLAHAYHSNKLSHAYLFEGDDAQSMKHVAVNFAKLIL------------CDENHQC 49 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +H DFLY+S N I ++I ++ + ++ G ++V +I+ Sbjct: 50 ELKVDTFNHP--DFLYVSSDEN--------TIKKEQIEQLVHHMNQLPIEGNYKVYIIEE 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP+ + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPKNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|229586414|ref|YP_002844915.1| DNA polymerase III subunit delta' [Rickettsia africae ESF-5] gi|228021464|gb|ACP53172.1| DNA polymerase III delta subunit [Rickettsia africae ESF-5] Length = 264 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I + MN NAAN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ 200 + +I+STIRSRC I S ++N LY Q Sbjct: 130 AASIISTIRSRCFKINVRSSIHHTKNELYSEFIQ 163 >gi|187918326|ref|YP_001883889.1| DNA polymerase III subunits gamma and tau [Borrelia hermsii DAH] gi|119861174|gb|AAX16969.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH] Length = 550 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 30/284 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L + R+ +A +F G +G+GK + +A + + P +C Sbjct: 19 LEGQDFVVETLKHSIENNRIANAYIFSGPRGVGKTSSARAFARCLNCQAGPTIMPCGVCF 78 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K + + D + + + N +V ++R+I+ + + +RV Sbjct: 79 S------CKSIDNDNSLDIIEIDGASNT---------SVQDVRQIKEEIMFPPASSKYRV 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ +A NALLK++EEPP ++FI + + TI+SRC F L Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQHFNFRLLPLEK 183 Query: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 +Y+ L+ + I D ++ + GSV A + D+I+S I+ E Sbjct: 184 IYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLF----DQIVSLSNSDINF---E 236 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 KM +DE L +K+A L + LKE+ A L+G Sbjct: 237 QIKSKMGLTSDEFL---EKLALSILND-DLKELLCVLDAVFLTG 276 >gi|332035196|gb|EGI71705.1| DNA polymerase III delta prime subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 304 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D + L++ Y + R HHA LF G G+GK L +L + + PC Sbjct: 8 DTQARLAKSYRAERFHHAQLFCGPVGVGKFELSDELGNALLCQNIAKQVAAQNSVLKPCG 67 Query: 79 PFVKQMASHALHDFLYLSYSLNPK--TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 H L L+ + K T I VD+IR I F++ +A +V +I Sbjct: 68 --------HCKSCLLTLAGTHPDKRLTQVDGQSIGVDDIRGISDFMNHSAAQNGNKVAII 119 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + M AANALLK+LEEP IL + + +TI SRC Sbjct: 120 ENCEKMTTAAANALLKTLEEPTNSRFLILTTSQPEQLPATILSRC 164 >gi|229819160|ref|YP_002880686.1| AAA ATPase [Beutenbergia cavernae DSM 12333] gi|229565073|gb|ACQ78924.1| AAA ATPase [Beutenbergia cavernae DSM 12333] Length = 385 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 47/80 (58%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +++IT+ E R + G WRVI+++ D M +N LLK++EEPP + +++L Sbjct: 86 KSIITITEARELVTLAQRAPAEGRWRVIVVEDADRMVERTSNVLLKAIEEPPPRTVWLLC 145 Query: 167 SHASPTILSTIRSRCLSIKF 186 + + +++TIRSRC + Sbjct: 146 APSPQDVVATIRSRCRQVSL 165 >gi|322378607|ref|ZP_08053045.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1] gi|321148967|gb|EFX43429.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1] Length = 470 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + L G E + LS R+ HA LF G +G GK + +A + S Sbjct: 14 YRPKHFKDLIGQESVSNTLSLALDHARLAHAYLFSGLRGSGKTSTARIFARALQCEKGPS 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P D C + + L D + + + N + R +I + +Y SL Sbjct: 74 SIPC-----DSCLNCLDALKDRHL-DIIEIDGASNRRIEDVRNII-----EQTKYKPSL- 121 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++ MID + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 122 ---GRFKIFMIDEAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRTQHFH 178 Query: 186 FNSLSENNLYKALEQL 201 F ++ + + L+ + Sbjct: 179 FKKIAPKAIVQRLQSI 194 >gi|320354016|ref|YP_004195355.1| DNA polymerase III subunits gamma and tau [Desulfobulbus propionicus DSM 2032] gi|320122518|gb|ADW18064.1| DNA polymerase III, subunits gamma and tau [Desulfobulbus propionicus DSM 2032] Length = 648 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 27/243 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R P + G + + + L R+ AL+F G +G GK TL A + Sbjct: 5 VLARKSRPQTFAEVVGQKAVVRTLQNALAQQRVAQALIFSGVRGTGKTTLARIMAKALNC 64 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 Q P + P +C + +A A D + + N + EIR + Sbjct: 65 EQGP--ATEPCNLCR------SCRDIADGASIDLQEVDGASN---------RGIQEIREL 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + +++I+ID V + A NALLK+LEEPP V F+ + + TI Sbjct: 108 KEKIRFMPTSSRYKIIIIDEVHMLTTEAFNALLKTLEEPPDHVYFMFATTELHKVPVTIL 167 Query: 179 SRCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC + L L + EQ + + D + A GSV + +L D+ Sbjct: 168 SRCQRYELKRLGHRELAAHFTRLAEQEGVRMEPAAVDMIVREAGGSVRDGLSLL----DQ 223 Query: 235 IIS 237 I S Sbjct: 224 IFS 226 >gi|254773489|ref|ZP_05215005.1| DNA polymerase III subunit delta' [Mycobacterium avium subsp. avium ATCC 25291] Length = 335 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 18/200 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A + D R HA Sbjct: 36 AGTMTHAWLITGPPGSGRSVAALCFAAALQCTADGEPGCGRC---------------HAC 80 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 L +++ + I VD++R I + TG W++++I+ D + AANA Sbjct: 81 TTTLAGTHADVRRVVPEGLSIGVDDMRAIVQIAARRPATGNWQIVVIEDADRLTEGAANA 140 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + + T+RSRC + + S + + L + + Sbjct: 141 LLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALVTPSSEAIARVLVDSDGLTPE 200 Query: 208 SKRDFVKIAAYGSVARAIKI 227 + D+ + G V RA ++ Sbjct: 201 TA-DWAASVSGGHVGRARRL 219 >gi|145221873|ref|YP_001132551.1| DNA polymerase III subunits gamma and tau [Mycobacterium gilvum PYR-GCK] gi|145214359|gb|ABP43763.1| DNA polymerase III, tau subunit [Mycobacterium gilvum PYR-GCK] Length = 652 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS SGR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C + D L + + VD+ R +R Sbjct: 64 GP--TATPCGVC--DSCVALAPNGPGN--MDVTELDAASH---------GGVDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 109 RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F L+ + +E++ Sbjct: 169 THHYPFRLLAPKTMRTLIEKI 189 >gi|315446392|ref|YP_004079271.1| DNA polymerase III subunit gamma/tau [Mycobacterium sp. Spyr1] gi|315264695|gb|ADU01437.1| DNA polymerase III, subunit gamma/tau [Mycobacterium sp. Spyr1] Length = 658 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS SGR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C + D L + + VD+ R +R Sbjct: 64 GP--TATPCGVC--DSCVALAPNGPGN--MDVTELDAASH---------GGVDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 109 RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F L+ + +E++ Sbjct: 169 THHYPFRLLAPKTMRTLIEKI 189 >gi|300853305|ref|YP_003778289.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM 13528] gi|300433420|gb|ADK13187.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM 13528] Length = 553 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + R+ HA LF G +G GK + A V Sbjct: 8 REWRPKTFSDVVGQDHITVTLKNQILNHRIAHAYLFSGTRGTGKTSTAKILAKAV----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ K++ + D + + + K R D I ++Y Sbjct: 63 ---NCLNLQDGEPCNECEMCKKINAGISIDVIEMDAA-----SKRRLEDIKDVIENVKY- 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 ---PPQEGKYKVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F + + ++ L Sbjct: 171 QKFDFRRIKSSEIFNRL 187 >gi|291556849|emb|CBL33966.1| hypothetical protein ES1_08940 [Eubacterium siraeum V10Sc8a] Length = 318 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 19/208 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +LFG + L++ S R+ H ++ GE+GIGK T A L + P C Sbjct: 12 KLFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C + HA D +Y K K+ + D +R F S N R Sbjct: 72 RS--CRNIIS--GEHA--DVIY------AKGEKY----SKDSVRENVRFASTLPNDSDTR 115 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V + + + M N LLK++EEP + +I + IL TI+SR + I + ++ Sbjct: 116 VFIYEDCEEMTEEQQNVLLKAIEEPSKYNRYIFTCSNASAILETIKSRLVCIPISDMTAE 175 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LE G+DS + YG+ Sbjct: 176 ECVSCLE---YNGYDSDTAKRSVELYGT 200 >gi|332162100|ref|YP_004298677.1| DNA polymerase III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666330|gb|ADZ42974.1| DNA polymerase III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 335 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 AGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCGECHS------CRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P+ GK + + V+ +R+ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLTPEKGK--SSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|307693621|ref|ZP_07635858.1| DNA polymerase III subunits gamma and tau [Ruminococcaceae bacterium D16] Length = 604 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 24/185 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G E I + L Q GR+ HA LF G G +L Sbjct: 12 RTFDDV-----VGQEHITQTLKQQVSGGRLSHAYLF-----TGTRGTGKTTCAKILSRAV 61 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++PV N +PC+ P + + ++ D L L + N VD++R +R Sbjct: 62 NCQSPV---NGNPCNQCPACLGIENGSILDVLELDAASNNG---------VDQVRALRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T RV ++D V ++ A NALLK LEEPP ++FIL + + +TI+SRC Sbjct: 110 AVYTPAAVKKRVYIVDEVHMLSTPAFNALLKILEEPPAHLMFILATTELHKVPATIKSRC 169 Query: 182 LSIKF 186 F Sbjct: 170 QQFSF 174 >gi|295691235|ref|YP_003594928.1| DNA polymerase III subunits gamma and tau [Caulobacter segnis ATCC 21756] gi|295433138|gb|ADG12310.1| DNA polymerase III, subunits gamma and tau [Caulobacter segnis ATCC 21756] Length = 616 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 66 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 125 Query: 61 NPDFSKAPVRMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 D K P + C ++ H D L L + K VDE+R + Sbjct: 126 ETDTVKGPSVDLTTEGYHCRAIIE--GRH--MDVLELDAASRTK---------VDEMREL 172 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V ++ A NALLK+LEEPP FI + + TI Sbjct: 173 LDGVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTIL 232 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SRC + + L K +++ G + D + + AA GSV + +L Sbjct: 233 SRCQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLL 286 >gi|313891870|ref|ZP_07825475.1| DNA polymerase III subunit gamma and tau family protein [Dialister microaerophilus UPII 345-E] gi|313119864|gb|EFR43051.1| DNA polymerase III subunit gamma and tau family protein [Dialister microaerophilus UPII 345-E] Length = 341 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++G I+K L + + H ++F G++G+GK T A + + D + M Sbjct: 6 RIYGQSKIQKSLKRMVSDDTLSHTIIFYGDEGLGKTTAAIDLAAVLTRKNDKYQKETEMW 65 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + S + S L ++ L K ++R +F + + Sbjct: 66 FSEDVSRYQILTTSDKLLWYIR-PLGLELKFEQFRI-----------FFEEMNSFDNQVH 113 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V +ID M ANALLK+LEEP V FILI+H ++L TI SR Sbjct: 114 VCIIDEAQSMMPPVANALLKTLEEPLNNVYFILITHELNSLLPTIISRA 162 >gi|256822418|ref|YP_003146381.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069] gi|256795957|gb|ACV26613.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069] Length = 332 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 34/204 (16%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSK 66 V+NQ F K + + G + HA+L G +GIG+ A +L D + Sbjct: 6 VWNQGRF------KRVQDQFQQGSLPHAILLMGPEGIGRENFAQSLAEWLLCLNRQDEAC 59 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 + C F+ + H + L + +T I+V ++R + + ++ Sbjct: 60 GECKSC-------FLFEAGHHPDYHLLDIEQD--------KTQISVGQVRELITAMQESS 104 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC--LSI 184 + G W+V I V MN ++ NALLK+LEEP L IL + + TIRSR LS+ Sbjct: 105 HQGGWKVANITNVQAMNASSFNALLKTLEEPQDNTLLILQTSQLQGVPLTIRSRAQLLSL 164 Query: 185 KFNSLSE---------NNLYKALE 199 + E N+ +ALE Sbjct: 165 SVDGSEEVKAWLIERQGNMTQALE 188 >gi|189347356|ref|YP_001943885.1| DNA-directed DNA polymerase [Chlorobium limicola DSM 245] gi|189341503|gb|ACD90906.1| DNA-directed DNA polymerase [Chlorobium limicola DSM 245] Length = 390 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 33/249 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA--------------GHVL 59 + G + + L + +GR+ HA LF G + GK ++ F A G Sbjct: 6 IIGQKQQIRVLQKALETGRLAHAYLFTGPEASGKESVAFELARTLNCRNKNRAPETGSCG 65 Query: 60 QNPD------FSKA------PVRMCNPDPCSPFVKQ----MASHALHDFLYLSYSLNP-- 101 PD F A PV D K+ + ++ L LNP Sbjct: 66 TCPDCMQIDSFMHANIEYIFPVEAALLDSGESAKKENKKFSETKERYEALLEEKKLNPYL 125 Query: 102 KTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 R++ I ++I ++ + G ++ +I D MN AAN +LK LEEPP Sbjct: 126 TPAMERSMGILSEQIVTLQQKALYRPSEGQRKIFIISQADRMNPAAANKILKLLEEPPAH 185 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 +LFILIS +L TIRSRC ++F L K +++ + + + F+ + G+ Sbjct: 186 ILFILISSRPEAVLPTIRSRCQIVRFQRPGPMELRKWIQENRPDIHEPELGFIVSFSRGN 245 Query: 221 VARAIKILH 229 +A A +++ Sbjct: 246 LALAWDLIN 254 >gi|123441947|ref|YP_001005930.1| DNA polymerase III subunit delta' [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088908|emb|CAL11715.1| DNA polymerase III, delta' subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 335 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 AGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCGECH------SCRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L P+ GK + + V+ +R+ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLTPEKGK--SSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|157804256|ref|YP_001492805.1| DNA polymerase III subunits gamma and tau [Rickettsia canadensis str. McKiel] gi|157785519|gb|ABV74020.1| DNA polymerase III subunits gamma and tau [Rickettsia canadensis str. McKiel] Length = 544 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 34/271 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----L 59 R + P L G E + K LS + R+ L G +G+GK T A V L Sbjct: 15 RKYRPGNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKTVNCSAL 74 Query: 60 QNPDFSKAPVRM-CNPDPCSPF-VKQMASHALHDFLYLSYSL----------------NP 101 D V++ N P +++ S+ + F + Y++ +P Sbjct: 75 ITEDTVGNSVKLKYNEQGAKPIGNRRVTSNNVGKFKSIDYTIRTCEECTNCISFNNHNHP 134 Query: 102 KTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 + +VD+IRRI G ++ +ID V +++ A NALLK+LEEPP Sbjct: 135 DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 194 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY 218 ++FI + I +TI SRC LS ++K LE + K + + ++I ++ Sbjct: 195 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKADIEALRIISF 254 Query: 219 ---GSVARAIKIL------HYDCDKIISSYI 240 GS A+ IL D IISS + Sbjct: 255 KSEGSARDAVSILDQAASMSAKSDNIISSQV 285 >gi|255535448|ref|YP_003095819.1| DNA polymerase III subunits gamma and tau [Flavobacteriaceae bacterium 3519-10] gi|255341644|gb|ACU07757.1| DNA polymerase III subunits gamma and tau [Flavobacteriaceae bacterium 3519-10] Length = 372 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 26/191 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--------- 63 ++ G + I+ L++ R+ HA LF G G G L +A +L+ + Sbjct: 5 QIVGQKKIKHLLTESISDNRVGHAQLFLGADGYGTLALAMAFAKEILKKENEHSCSKVAH 64 Query: 64 -------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP------KTGKWRTVI 110 FS + + S F ++ L++ YS N ++ + I Sbjct: 65 LNHLDLHFSFPVFKEKSSGLSSNFAEEFREMVLNN----PYSDNEDWSRILESENKQLTI 120 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 DEI ++ +L + G +++++ D MN +AAN LK LEEPP+ IL + Sbjct: 121 YADEIDQVNQKFALKSFEGGSKILIVWQADKMNISAANKFLKFLEEPPKDTFIILTAENG 180 Query: 171 PTILSTIRSRC 181 +IL TI SR Sbjct: 181 DSILPTILSRT 191 >gi|323937839|gb|EGB34103.1| DNA polymerase III [Escherichia coli E1520] Length = 334 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + VD +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGVDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|298294413|ref|YP_003696352.1| DNA polymerase III subunits gamma and tau [Starkeya novella DSM 506] gi|296930924|gb|ADH91733.1| DNA polymerase III, subunits gamma and tau [Starkeya novella DSM 506] Length = 658 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 27/242 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS + SGR+ A + G +G+GK T A + Sbjct: 42 VLARKYRPQTFADLIGQEAMVRTLSNAFTSGRIAQAYILTGVRGVGKTTTARILARALNY 101 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWRTVI 110 P A N P +P + M + H D + + N G R +I Sbjct: 102 EPADGPA---GANTVPSAPTL-DMPALGRHCRDIIESRHVDVQEMDAASNTGIGDIREII 157 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 E R + L+ ++V +ID V ++ A N LLK+LEEPP+ V FI + Sbjct: 158 ---EAARYKPVLA------RYKVFIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEI 208 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIK 226 + T+ SR + L + L + + +G D++ V AA GSV A+ Sbjct: 209 RKVPVTVLSRTQRFDLRRVEAGTLARHLRAICDAEGVGIDTEALSLVARAAEGSVRDALS 268 Query: 227 IL 228 +L Sbjct: 269 LL 270 >gi|91210253|ref|YP_540239.1| DNA polymerase III subunit delta' [Escherichia coli UTI89] gi|117623284|ref|YP_852197.1| DNA polymerase III subunit delta' [Escherichia coli APEC O1] gi|218557980|ref|YP_002390893.1| DNA polymerase III subunit delta' [Escherichia coli S88] gi|237706916|ref|ZP_04537397.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA] gi|331657161|ref|ZP_08358123.1| DNA polymerase III subunit delta' [Escherichia coli TA206] gi|91071827|gb|ABE06708.1| DNA polymerase III, delta prime subunit [Escherichia coli UTI89] gi|115512408|gb|ABJ00483.1| DNA polymerase III, delta prime subunit [Escherichia coli APEC O1] gi|218364749|emb|CAR02439.1| DNA polymerase III, delta prime subunit [Escherichia coli S88] gi|226898126|gb|EEH84385.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA] gi|294492067|gb|ADE90823.1| DNA polymerase III, delta' subunit [Escherichia coli IHE3034] gi|307627431|gb|ADN71735.1| DNA polymerase III subunit delta' [Escherichia coli UM146] gi|315287440|gb|EFU46851.1| DNA polymerase III, delta' subunit [Escherichia coli MS 110-3] gi|315296641|gb|EFU55936.1| DNA polymerase III, delta' subunit [Escherichia coli MS 16-3] gi|323953215|gb|EGB49081.1| DNA polymerase III [Escherichia coli H252] gi|323957923|gb|EGB53635.1| DNA polymerase III [Escherichia coli H263] gi|331055409|gb|EGI27418.1| DNA polymerase III subunit delta' [Escherichia coli TA206] Length = 334 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLTPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|34580833|ref|ZP_00142313.1| DNA polymerase III delta subunit [Rickettsia sibirica 246] gi|28262218|gb|EAA25722.1| DNA polymerase III delta subunit [Rickettsia sibirica 246] Length = 269 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 5/107 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I + MN NAAN+ LK LE+ P+ LI+ Sbjct: 75 ISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 134 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQLKIMGWDSKRDFV 213 + +I+STIRSRC I S ++N LY E ++ + ++ DF+ Sbjct: 135 AASIISTIRSRCFKINVRSSIHHTKNELYS--EFIQSIADNNTLDFI 179 >gi|329121041|ref|ZP_08249672.1| DNA polymerase III subunit gamma/tau [Dialister micraerophilus DSM 19965] gi|327471203|gb|EGF16657.1| DNA polymerase III subunit gamma/tau [Dialister micraerophilus DSM 19965] Length = 341 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R++G I+K L + + H ++F G++G+GK T A + D + M Sbjct: 6 RIYGQSKIQKSLKRMVSDDTLSHTIIFYGDEGLGKTTAAIDLAAVLTHKNDKYQKETEMW 65 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + S + S L ++ L K ++R +F + + Sbjct: 66 FSEDVSRYQILTTSDKLLWYIR-PLGLELKFEQFRI-----------FFEEMNSFDNQVH 113 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V +ID M ANALLK+LEEP V FILI+H ++L TI SR Sbjct: 114 VCIIDEAQSMMPPVANALLKTLEEPLNNVYFILITHELNSLLPTIISRA 162 >gi|91205963|ref|YP_538318.1| DNA polymerase III subunit delta' [Rickettsia bellii RML369-C] gi|91069507|gb|ABE05229.1| DNA polymerase III delta subunit [Rickettsia bellii RML369-C] Length = 266 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ +V +I D MN N AN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQEFLSKTSAISGCKVAVIYSADLMNLNVANSCLKILEDTPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ--LKIMGWDSKRDFVK 214 + +I+STIRSRC I S SE LY Q +SK +F+K Sbjct: 130 ASSIISTIRSRCFKISTKSSERHSEEELYSKFIQPIADNENLNSKLEFIK 179 >gi|170681498|ref|YP_001744080.1| DNA polymerase III subunit delta' [Escherichia coli SMS-3-5] gi|170519216|gb|ACB17394.1| DNA polymerase III, delta' subunit [Escherichia coli SMS-3-5] Length = 334 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G+ L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGEDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|227529521|ref|ZP_03959570.1| possible DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227350606|gb|EEJ40897.1| possible DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 334 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 22/188 (11%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----LQNPDFSKAPVRMCNPD 75 I K L + + HA LF G G GK+ L A + LQN + PD Sbjct: 14 IVKQLQTVIKNHELAHAYLFVGPTGSGKSQLATWLALRLFCLHLQNGE----------PD 63 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 P +++ S D + P+ + R VDEIR ++ + +A G ++ + Sbjct: 64 LTCPECQRILSGNHPDVVVA----KPEGRQIR----VDEIRHLKDEFTKSAVEGNKKLFV 115 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I + M NAAN+LLK +EEP + ++++ +L TIRSR I+ L+ L Sbjct: 116 IHDAEKMTNNAANSLLKFIEEPGPGIYILMLTTNKSAVLPTIRSRTQVIELRPLARAELE 175 Query: 196 KALEQLKI 203 KAL + +I Sbjct: 176 KALAKQEI 183 >gi|297193020|ref|ZP_06910418.1| DNA polymerase III subunit delta' [Streptomyces pristinaespiralis ATCC 25486] gi|197719850|gb|EDY63758.1| DNA polymerase III subunit delta' [Streptomyces pristinaespiralis ATCC 25486] Length = 401 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 16/162 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASH 87 + +M HA LF G G G+ T +A + PD + C D C + +H Sbjct: 40 ASKMTHAWLFTGPPGSGRVTAARAFAAALQCTGPDRALGGTPGCGFCDGC--HTALIGTH 97 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 A D +++ TG T I V ++R +R + AN G W+VI+++ + +N + Sbjct: 98 A--DVSWIAA-----TG---TQILVSDMRDTVRKSFTAPAN-GRWQVILVEDAERLNERS 146 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 ANA+LK++EEP + +++L + + +L TIRSRC + + Sbjct: 147 ANAVLKAVEEPAPRTVWLLCAPSVEDVLPTIRSRCRHLTLRT 188 >gi|15892136|ref|NP_359850.1| DNA polymerase III subunit delta' [Rickettsia conorii str. Malish 7] gi|15619265|gb|AAL02751.1| DNA polymerase III delta subunit [Rickettsia conorii str. Malish 7] Length = 269 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I + MN NAAN+ LK LE+ P+ LI+ Sbjct: 75 ISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 134 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ 200 + +I+STIRSRC I S ++N LY Q Sbjct: 135 AASIISTIRSRCFKINVRSSIHHTKNELYSEFIQ 168 >gi|262184083|ref|ZP_06043504.1| DNA polymerase III subunit delta' [Corynebacterium aurimucosum ATCC 700975] Length = 402 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 15/169 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ LF G G G++ +A ++ + D + P C P V +A A D Sbjct: 36 MSHSWLFTGPPGAGRSLAAQCFAAALMCTSADENGNP--GCGRCPSCQSV--LAKQAHTD 91 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +Y+ +P+ ITV E R + + + WRV++ + D + AANALL Sbjct: 92 LVYV----DPQ----EQFITVGEAREVIGRAASLPSVAPWRVVIFNKADRLRNEAANALL 143 Query: 152 KSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKAL 198 K++EEPP++ + I+++ + P S T+RSRC + + S + K L Sbjct: 144 KTVEEPPERTVIIMVAPSEDPEDFSVTLRSRCRYLYIPAPSVEGVVKQL 192 >gi|329297192|ref|ZP_08254528.1| DNA polymerase III subunit delta' [Plautia stali symbiont] Length = 329 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 14/165 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 SG+ HHALL + G+G L + + ++ Q P K+ C+ + M +H Sbjct: 20 SGQAHHALLIQAIDGMGDDALVWGISRWLMCQQPQGLKS-CGQCH------GCQLMQAHT 72 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D+ Y L + GK + +D +R + L A G +++ + + AAN Sbjct: 73 HPDW----YRLEAEKGK--ASLGIDAVRDVSEKLYHFAQQGGAKIVWLPDATQLTEAAAN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ALLK+LEEPP F L +L+T+RSRC+ + E + Sbjct: 127 ALLKTLEEPPANCWFFLSVREPSRLLATLRSRCMKWHLSPPEETH 171 >gi|227832063|ref|YP_002833770.1| DNA polymerase III, delta' subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453079|gb|ACP31832.1| DNA polymerase III, delta' subunit [Corynebacterium aurimucosum ATCC 700975] Length = 415 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 15/169 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ LF G G G++ +A ++ + D + P C P V +A A D Sbjct: 49 MSHSWLFTGPPGAGRSLAAQCFAAALMCTSADENGNP--GCGRCPSCQSV--LAKQAHTD 104 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +Y+ +P+ ITV E R + + + WRV++ + D + AANALL Sbjct: 105 LVYV----DPQ----EQFITVGEAREVIGRAASLPSVAPWRVVIFNKADRLRNEAANALL 156 Query: 152 KSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKAL 198 K++EEPP++ + I+++ + P S T+RSRC + + S + K L Sbjct: 157 KTVEEPPERTVIIMVAPSEDPEDFSVTLRSRCRYLYIPAPSVEGVVKQL 205 >gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5] Length = 749 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R + P + G + I L ++ HA LF G +G+GK T +A + +P Sbjct: 9 RKYRPATFASVVGQKHITSTLKNAIERAQLAHAYLFCGPRGVGKTTCARIFAKAINCLSP 68 Query: 63 DFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + ++A CN + C F + S +H+ S + +V++IR + Sbjct: 69 NGAEA----CNECESCRSF-NEGRSLNIHELDAASNN------------SVEDIRTLIEQ 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G + V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 112 VRIIPQVGRYSVFIIDEVHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 171 Query: 182 LSIKFNSL 189 FN + Sbjct: 172 QIYDFNRI 179 >gi|306835060|ref|ZP_07468103.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium accolens ATCC 49726] gi|304569041|gb|EFM44563.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium accolens ATCC 49726] Length = 399 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 28/174 (16%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV-KQMASHAL-- 89 M H+ LF G G G++ +A + MC DP P K A A+ Sbjct: 38 MSHSWLFTGPPGSGRSLAAIDFAAAL------------MCT-DPEEPGCGKCEACRAVLG 84 Query: 90 ---HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H L L ++P+ +I VD +R + + WRV++ + D +N N Sbjct: 85 TKQHTDLVL---VDPQ----EVIIPVDTVREVIGRAASLPTVAPWRVVIFNNADRLNNNG 137 Query: 147 ANALLKSLEEPPQKVLFILI--SHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ANALLK++EE P++ + I+ S A T+RSRC + S S +N+ L Sbjct: 138 ANALLKTVEESPERTVIIMCAPSDAPEDFSQTLRSRCRHLYIPSPSVDNIVAQL 191 >gi|16124522|ref|NP_419086.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus CB15] gi|13421402|gb|AAK22254.1| DNA polymerase III, gamma and tau subunits [Caulobacter crescentus CB15] Length = 608 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 58 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 117 Query: 61 NPDFSKAPVRMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 D K P + C ++ H D L L + K VDE+R + Sbjct: 118 ETDTVKGPSVDLTTEGYHCRSIIE--GRH--MDVLELDAASRTK---------VDEMREL 164 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V ++ A NALLK+LEEPP FI + + TI Sbjct: 165 LDGVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTIL 224 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SRC + + L K +++ G + D + + AA GSV + +L Sbjct: 225 SRCQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLL 278 >gi|120406342|ref|YP_956171.1| DNA polymerase III subunit delta' [Mycobacterium vanbaalenii PYR-1] gi|119959160|gb|ABM16165.1| DNA polymerase III, delta prime subunit [Mycobacterium vanbaalenii PYR-1] Length = 407 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A + D + C C MA Sbjct: 41 TGTMTHAWLITGPPGSGRSIAALCFAAALQCTSDGTPG----CGE--CRACATTMAGTHA 94 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VD +R I S TG W++++I+ D + AANA Sbjct: 95 DVRRIIPEGLS---------IGVDAMRAIVQIASRRPGTGRWQIVVIEDADRLTEGAANA 145 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRC 181 LLK +EEPP +F+L + + I T+RSRC Sbjct: 146 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRC 179 >gi|89074516|ref|ZP_01160988.1| hypothetical DNA polymerase III, delta prime subunit [Photobacterium sp. SKA34] gi|89049620|gb|EAR55179.1| hypothetical DNA polymerase III, delta prime subunit [Photobacterium sp. SKA34] Length = 320 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD +R+ + + T++ RVI+I+ D M +NA+LK+LEEPP+ FIL + + Sbjct: 86 IGVDAVRQCNRWATETSHLNGQRVILIEHADAMGEAGSNAILKTLEEPPKGCQFILTAQS 145 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALE 199 ++L TI SRC + +E N+ + +E Sbjct: 146 LDSLLPTIVSRCNKWRLPIPAEANVKQWVE 175 >gi|167041262|gb|ABZ06018.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_005D21] gi|167045767|gb|ABZ10413.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine bacterium HF4000_APKG3108] Length = 555 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 30/286 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G + + + L S R+ A + GE+G GK + + + +F Sbjct: 13 YRPKNFKELIGQDIMVETLVNSIKSNRIAQAFMLTGERGTGKTSTARIISKSLTCTGNFL 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + V+ + C +++ + D + +TG VD++R+I Sbjct: 73 EG-VKCKTGEIC--HCEEITNDKHLDVTECDAA--SRTG-------VDDVRQIIDAARYK 120 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 T +++ +ID ++R+A NALLK+LEEPP ++ FI + I TI SRC + Sbjct: 121 PTTAKYKIYIIDECHMLSRSAWNALLKTLEEPPNQLKFIFCTTEPKKIPLTIASRCQTFH 180 Query: 186 FNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 + S L+ L+++ + DS + A+ GSV AI +L +I+ ++ Sbjct: 181 LHRASIKVLFDHLKKISKIEEGKISDSAIKLIAKASTGSVRDAISLLDR---ALINQHVS 237 Query: 242 LIHIPRQEYALQKMQQIAD-----ELL----SQDQKIAFDFLIEFI 278 + E ++KM +AD ELL DQK + + L + I Sbjct: 238 EKEV--DEATMRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMI 281 >gi|238651026|ref|YP_002916883.1| DNA polymerase III subunit delta' [Rickettsia peacockii str. Rustic] gi|238625124|gb|ACR47830.1| DNA polymerase III subunit delta' [Rickettsia peacockii str. Rustic] Length = 269 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I + MN NAAN+ LK LE+ P+ LI+ Sbjct: 75 ISIEQIRKLQDFLSKTSAISGYKVAIIYAAELMNLNAANSCLKILEDAPKNSYIFLITSR 134 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQ 200 + +I+STIRSRC I S ++N LY Q Sbjct: 135 AASIISTIRSRCFKINVRSSIHHTKNELYSEFIQ 168 >gi|157828090|ref|YP_001494332.1| DNA polymerase III subunit delta' [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932790|ref|YP_001649579.1| DNA polymerase III subunit delta' [Rickettsia rickettsii str. Iowa] gi|157800571|gb|ABV75824.1| DNA polymerase III subunit delta' [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907877|gb|ABY72173.1| DNA polymerase III, delta' subunit [Rickettsia rickettsii str. Iowa] Length = 269 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FLS T+ ++V +I + MN NAAN+ LK LE+ P+ LI+ Sbjct: 75 ISIEQIRKLQDFLSKTSAISGYKVAIIYAAELMNLNAANSCLKILEDAPKNSYIFLITSR 134 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQLKIMGWDSKRDFV 213 + +I+STIRSRC I S ++N LY E ++ + + DF+ Sbjct: 135 AASIISTIRSRCFKINVRSSIHHTKNELYS--EFIQAIADNKTLDFI 179 >gi|313677219|ref|YP_004055215.1| DNA polymerase iii gamma/tau subunit [Marivirga tractuosa DSM 4126] gi|312943917|gb|ADR23107.1| DNA polymerase III gamma/tau subunit [Marivirga tractuosa DSM 4126] Length = 376 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 33/211 (15%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN- 73 G D+++ L++ SG++ HA LF G+ G + YA ++ +NP + A CN Sbjct: 8 GLTDLKEQLTKGVKSGKIAHAQLFWGKSGAANLPMALAYATYLNCENPTENDA-CGQCNS 66 Query: 74 ----------------PDPCSPFVKQMASHALHDFL--YLSYSLNPK------------T 103 P + +K S ++F+ + S+ L T Sbjct: 67 CHKNAKFIHPDFQFSFPTAANDSIKGDDSKLSNNFMKYWRSFLLKDSFASAANWIDHIGT 126 Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 G + I DE + I LSL A G +++++I + ++ +AANALLK +EEP K +F Sbjct: 127 GNKQLNIAKDESKNIIRNLSLKAFEGKYKIMLIWLPEYLHPSAANALLKIIEEPSDKTVF 186 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +L+S+ ++ TI SR ++ + S++ + Sbjct: 187 LLVSNNREKLIGTIISRTQAVHVPNYSDDEV 217 >gi|1293572|gb|AAB61695.1| DNA polymerase III tau homolog DnaX [Caulobacter crescentus CB15] Length = 608 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 58 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 117 Query: 61 NPDFSKAPVRMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 D K P + C ++ H D L L + K VDE+R + Sbjct: 118 ETDTVKGPSVDLTTEGYHCRSIIE--GRH--MDVLELDAASRTK---------VDEMREL 164 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V ++ A NALLK+LEEPP FI + + TI Sbjct: 165 LDGVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTIL 224 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SRC + + L K +++ G + D + + AA GSV + +L Sbjct: 225 SRCQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLL 278 >gi|127512509|ref|YP_001093706.1| DNA polymerase III, delta prime subunit [Shewanella loihica PV-4] gi|126637804|gb|ABO23447.1| DNA polymerase III, delta prime subunit [Shewanella loihica PV-4] Length = 304 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 72/161 (44%), Gaps = 15/161 (9%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E F SQ SG+ HA L QG G L A L + +C C F Sbjct: 11 EAFCSQLI-SGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAPRAIGACGVCKS--CQLF 67 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + +H D L N I VD++R + L+ TA G RV +I + Sbjct: 68 IA--GNHP--DCYQLEADGNQ--------IKVDQVRELCQKLTATAQQGGRRVAVIKNCE 115 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +N AANALLK+LEEP ++ L +L S +++TI SRC Sbjct: 116 RLNTAAANALLKTLEEPGRETLLLLQSDTPSRLMATISSRC 156 >gi|291617042|ref|YP_003519784.1| HolB [Pantoea ananatis LMG 20103] gi|291152072|gb|ADD76656.1| HolB [Pantoea ananatis LMG 20103] gi|327393493|dbj|BAK10915.1| DNA polymerase III delta' subunit HolB [Pantoea ananatis AJ13355] Length = 329 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR HHALL G+G L + + ++ + ++ C C + M ++ Sbjct: 21 GRAHHALLITSLDGMGDDALVWGISRWLMC---LQRDGLKSCGH--CH-GCQLMQANTHP 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ Y L + GK T + +D +R++ + A G +V+ + ++ AANAL Sbjct: 75 DW----YRLEAEKGK--TTLGIDAVRQVTEKMYHYAQQGGAKVVWLPDAAQLSEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 LK+LEEPP F L +L+T+RSRC+ + EN+ Sbjct: 129 LKTLEEPPANSWFFLSCREPSRLLATLRSRCMVLTLPPPDENH 171 >gi|242278933|ref|YP_002991062.1| DNA polymerase III, delta prime subunit [Desulfovibrio salexigens DSM 2638] gi|242121827|gb|ACS79523.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio salexigens DSM 2638] Length = 288 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 75 DPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 DPC +Q+A +A +DFL + N + I+VD IR + N G R Sbjct: 58 DPCGSCQSCQQIADNAFNDFLLIDREENESGTGLKQDISVDSIRELLPVWGQPPNGGGTR 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 V ++ +N N+ANALLK+LEEP +F+L + +L T+ SR I Sbjct: 118 VTVVREAQHLNGNSANALLKTLEEPRPGNVFVLTAPQRERLLETLVSRSWVITL 171 >gi|260062481|ref|YP_003195561.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata HTCC2501] gi|88784046|gb|EAR15216.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata HTCC2501] Length = 631 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 35/238 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + I + L + + ALLF G +G+GK T A + ++ + Sbjct: 20 RKYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKINEDGN 79 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 DF + + L+ + +VD+IR + + Sbjct: 80 QRDG----------------------EDFAFNIFELDAASNN-----SVDDIRNLIDQVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + I+ TI SRC Sbjct: 113 IPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQI 172 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + L EQ I + + A G++ A+ I D+++S Sbjct: 173 FDFRRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIF----DRVVS 226 >gi|324998990|ref|ZP_08120102.1| DNA polymerase III subunits gamma and tau [Pseudonocardia sp. P1] Length = 385 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 33/208 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + L+ +GR++HA LF G +G GK + + + +Q Sbjct: 7 RKYRPAKLADVVGQEHVTEPLATALSAGRVNHAYLFSGPRGCGKTSSARILARSLNCVQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-------- 113 P PDPC + S SL P+ VI +D Sbjct: 67 P----------TPDPCG----ECGS---------CVSLAPEGPGNIDVIELDAASHGGVE 103 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 + R +R +RV ++D + NALLK +EEPP+ ++F+ + + Sbjct: 104 DARELRDRAFYAPAESRYRVFVVDEAHMVTTQGFNALLKIVEEPPEHLVFVFATTEPDKV 163 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 L TIRSR F + + LE++ Sbjct: 164 LPTIRSRTHHYPFRLIPPGTMRSLLERI 191 >gi|294496902|ref|YP_003560602.1| DNA polymerase III subunit delta' [Bacillus megaterium QM B1551] gi|294346839|gb|ADE67168.1| DNA polymerase III, delta' subunit [Bacillus megaterium QM B1551] Length = 330 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 20/183 (10%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 ++ K L R+ HA LFEG +G GK + F +A + F + PV N PC Sbjct: 14 NVLKILQNSLLKERVAHAYLFEGSKGTGKKQISFLFAKAL-----FCQNPV---NHRPC- 64 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW---RVIM 135 H + + +P + +I++ S TG ++ + Sbjct: 65 --------HECSNCRRIDSGNHPDIHLIEPAGLSIKKEQIQFLQSEFTKTGVESNKKLYI 116 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ++ VD M +AAN+LLK LEEP IL++ +L TI SRC I F SL+ L Sbjct: 117 VNHVDKMTVSAANSLLKFLEEPGNGTYAILLTENIQRLLDTIISRCQVISFRSLTPEQLA 176 Query: 196 KAL 198 + L Sbjct: 177 EKL 179 >gi|229492523|ref|ZP_04386326.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis SK121] gi|229320509|gb|EEN86327.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis SK121] Length = 738 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 37/210 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPASFAEVVGQEHVTAPLSTALDTGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT--------- 111 P + P +C D C SL P G +T Sbjct: 64 GP--TSTPCNVC--DSC-------------------VSLGPG-GTGNLDVTELDAASHGG 99 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R +RV +ID + NALLK +EEPP+ ++FI + Sbjct: 100 VDDTRELRDKAFHAPAASRYRVFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPE 159 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSR F L+ + + LE++ Sbjct: 160 KVLPTIRSRTHHYPFRLLAPSTMRGLLEKI 189 >gi|188534148|ref|YP_001907945.1| DNA polymerase III, delta' subunit [Erwinia tasmaniensis Et1/99] gi|188029190|emb|CAO97062.1| DNA polymerase III, delta' subunit [Erwinia tasmaniensis Et1/99] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 14/152 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHALL + G+G L + ++ + P+ K+ + C+ C + Q +H Sbjct: 22 RGHHALLIQALPGMGDDALIWGIGRWLMCRQPEGLKSCGK-CHA--CE--LMQAGTHP-- 74 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ Y L + GK + +D +R + L A G +V+ + + AANAL Sbjct: 75 DW----YRLEAEKGK--NALGIDAVRSVTEKLYHHAQQGGAKVVWLPDAQQLTEAAANAL 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LK+LEEPP+ F+L S +L T+RSRCL Sbjct: 129 LKTLEEPPKNTWFLLSSREPSRLLPTLRSRCL 160 >gi|149924601|ref|ZP_01912956.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] gi|149814526|gb|EDM74111.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] Length = 747 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 35/244 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L S R+HHA LF G +G+GK T A +L Sbjct: 8 RKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTT-----AARIL---- 58 Query: 64 FSKAPVRMC----NPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRR 117 A +C P+PC+ V + + D + + + N +VD+IR Sbjct: 59 ---AKCLVCEHGPTPEPCNQCVHCVGINEGRSVDVIEIDGASN---------NSVDDIRS 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + ++ +ID V + + A NALLK+LEEPP V F+ + +L TI Sbjct: 107 LRDQVHYLPQIARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTI 166 Query: 178 RSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAAY---GSVARAIKILHYDCD 233 SR + + + L L+ L+ G+ + + + + A GSV ++ +L D Sbjct: 167 LSRVSRLDYRRVRAATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLL----D 222 Query: 234 KIIS 237 K+I+ Sbjct: 223 KVIA 226 >gi|148653256|ref|YP_001280349.1| DNA polymerase III subunits gamma and tau [Psychrobacter sp. PRwf-1] gi|148572340|gb|ABQ94399.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter sp. PRwf-1] Length = 751 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 15/194 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + K L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELVGQSHVSKALINAIDHNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ C + D + + + K V++ R + Sbjct: 67 ETGVTSTPCGVCSS--CVAIDQGR----FIDLIEIDAASRTK---------VEDTRELID 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 112 NVPYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSENNL 194 CL L + L Sbjct: 172 CLQFVLRPLPQQAL 185 >gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM] Length = 559 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 27/178 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ ALLF G +G+GK T R + D Sbjct: 9 RKYRPQEFDTVVGQSHITDTLEHAIAENQLAQALLFCGPRGVGKTTCA-RILARKINEKD 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + F Y + L+ + +VD+IR + + Sbjct: 68 ---------------------GATSEDGFSYNIFELDAASNN-----SVDDIRELTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 YAPQVGKYKVYIIDEVHMLSSQAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 >gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] Length = 901 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEYG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DEIR +R + Sbjct: 68 PTDHPCNECS------ACKSILSGQSMDVLEIDAASN---------RGIDEIRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWDS-KRDFVKIAAYGSVARAIKIL 228 F ++ +++ + L + + G DS + + A G + A+ IL Sbjct: 173 YTFRRITSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSIL 221 >gi|225621117|ref|YP_002722375.1| DNA polymerase III subunit delta' [Brachyspira hyodysenteriae WA1] gi|225215937|gb|ACN84671.1| DNA polymerase III delta prime subunit [Brachyspira hyodysenteriae WA1] Length = 464 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 7/124 (5%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TVI +D +R I R+I+I+ ++ M++ A N L++LEEP +FILI+ Sbjct: 216 TVIPLDTVRNIIELTYRKPRISNKRIIIIEGIELMDKRAPNIFLRTLEEPSDNNIFILIT 275 Query: 168 HASPTI----LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-AYGSVA 222 + + + +RSR + +KF+ LSEN L L +K + + ++ + + +YGSVA Sbjct: 276 SDTNKLVQDGMKPLRSRMMELKFSPLSENTLRSIL--MKRLRLNEEKAALALENSYGSVA 333 Query: 223 RAIK 226 +A+K Sbjct: 334 KAVK 337 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 ++ G K +S Y SGR+HHA LF G++GIGK YA + Sbjct: 3 KVLGQTTPLKIMSGIYKSGRLHHAYLFYGDEGIGKFESALNYAKAI 48 >gi|289643673|ref|ZP_06475785.1| DNA polymerase III, delta prime subunit [Frankia symbiont of Datisca glomerata] gi|289506506|gb|EFD27493.1| DNA polymerase III, delta prime subunit [Frankia symbiont of Datisca glomerata] Length = 419 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 54/94 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + V ++R + + +G WR+++++ D + AANALLK+LEEP Q+ +F+L + + Sbjct: 108 LGVKDVRELVRDAASAPTSGRWRILLLEDADRLTDQAANALLKALEEPAQRSVFLLCAPS 167 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +L TIRSRC + +++ AL + + Sbjct: 168 VDDVLPTIRSRCRVVALRLPRPSDVADALARAGV 201 >gi|37526717|ref|NP_930061.1| DNA polymerase III subunit delta' [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786149|emb|CAE15201.1| DNA-directed DNA polymerase III delta' chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 329 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 20/155 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR HHALL G G L + + ++ ++ ++ C H+ H Sbjct: 21 GRGHHALLVHANAGTGADVLIYGLSRWLMCR---NRQGMKSCG-----------KCHSCH 66 Query: 91 DFLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 + ++ ++P+ GK T + V+ +R+I L + G +++ + + + A Sbjct: 67 LMMAGTHPDWHIMSPEKGK--TSVGVEAVRQITEKLYSRSQQGGVKIVWLPLTECLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F+L ++L+T+RSRC Sbjct: 125 ANALLKTLEEPPKHTYFLLECRQPSSLLATLRSRC 159 >gi|323185778|gb|EFZ71139.1| DNA polymerase III subunit delta' [Escherichia coli 1357] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK ++ +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NMLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|302669459|ref|YP_003829419.1| DNA polymerase III delta' subunit HolB [Butyrivibrio proteoclasticus B316] gi|302393932|gb|ADL32837.1| DNA polymerase III delta' subunit HolB [Butyrivibrio proteoclasticus B316] Length = 348 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 103/201 (51%), Gaps = 15/201 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 +G++ HA + GE G GK + +A + ++ + + CN C V+ ++ + Sbjct: 23 TGKVSHAYIISGENGSGKEYIARIFAKALQCEHRENKNEYIEACNE--CHSCVQALSDNH 80 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D + +++ P + I VD+IR ++R + + +++ +I + M + A Sbjct: 81 -PDIITITHE-KPNS------IGVDDIREKLRDDVVIKPYESEYKIYIIPEGEKMTQAAQ 132 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGW 206 NALLK+LEEPP ++ I++++ L TI SRC+ + + ++++ K L E+ ++ + Sbjct: 133 NALLKTLEEPPSYIVIIILTNNINAFLQTIISRCIVLPMKPVKDDSIRKYLMEECHVVDY 192 Query: 207 DSKRDFVKIAAYGSVARAIKI 227 K A G+V +A+++ Sbjct: 193 --KAVLCASFARGNVGKALEL 211 >gi|157157017|ref|YP_001462331.1| DNA polymerase III subunit delta' [Escherichia coli E24377A] gi|209918354|ref|YP_002292438.1| DNA polymerase III subunit delta' [Escherichia coli SE11] gi|218553676|ref|YP_002386589.1| DNA polymerase III subunit delta' [Escherichia coli IAI1] gi|218694632|ref|YP_002402299.1| DNA polymerase III subunit delta' [Escherichia coli 55989] gi|260854582|ref|YP_003228473.1| DNA polymerase III, delta prime subunit [Escherichia coli O26:H11 str. 11368] gi|260867462|ref|YP_003233864.1| DNA polymerase III, delta prime subunit [Escherichia coli O111:H- str. 11128] gi|293433388|ref|ZP_06661816.1| DNA polymerase III subunit delta [Escherichia coli B088] gi|300821122|ref|ZP_07101271.1| DNA polymerase III, delta' subunit [Escherichia coli MS 119-7] gi|309796558|ref|ZP_07690965.1| DNA polymerase III, delta' subunit [Escherichia coli MS 145-7] gi|331676889|ref|ZP_08377585.1| DNA polymerase III subunit delta' [Escherichia coli H591] gi|157079047|gb|ABV18755.1| DNA polymerase III, delta' subunit [Escherichia coli E24377A] gi|209911613|dbj|BAG76687.1| DNA polymerase III delta' subunit [Escherichia coli SE11] gi|218351364|emb|CAU97070.1| DNA polymerase III, delta prime subunit [Escherichia coli 55989] gi|218360444|emb|CAQ97998.1| DNA polymerase III, delta prime subunit [Escherichia coli IAI1] gi|257753231|dbj|BAI24733.1| DNA polymerase III, delta prime subunit [Escherichia coli O26:H11 str. 11368] gi|257763818|dbj|BAI35313.1| DNA polymerase III, delta prime subunit [Escherichia coli O111:H- str. 11128] gi|291324207|gb|EFE63629.1| DNA polymerase III subunit delta [Escherichia coli B088] gi|300526421|gb|EFK47490.1| DNA polymerase III, delta' subunit [Escherichia coli MS 119-7] gi|308119870|gb|EFO57132.1| DNA polymerase III, delta' subunit [Escherichia coli MS 145-7] gi|320200994|gb|EFW75578.1| DNA polymerase III delta prime subunit [Escherichia coli EC4100B] gi|324017490|gb|EGB86709.1| DNA polymerase III, delta' subunit [Escherichia coli MS 117-3] gi|324117330|gb|EGC11237.1| DNA polymerase III [Escherichia coli E1167] gi|331075578|gb|EGI46876.1| DNA polymerase III subunit delta' [Escherichia coli H591] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK ++ +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NMLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 548 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 23/178 (12%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G I L + + HA LF G +G GK + A + F++A +C Sbjct: 16 ELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTS-----AAKI-----FARAVNCLC 65 Query: 73 --NPDPCSPFVKQMA--SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 N +PC+ ++ + D + + + N +VD+IR ++ + Sbjct: 66 SENGNPCNHCENCLSILDDRVMDVIEMDAASNN---------SVDDIRELKEKVVYPPQN 116 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V +ID V ++++A NALLK LEEPP+ ++FIL + I TI SR F Sbjct: 117 LKYKVYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQRFNF 174 >gi|326561356|gb|EGE11712.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis 46P47B1] Length = 323 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 17/164 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + RM H LL G++GIGK +R+ ++L K C +++ Sbjct: 24 LTGQFIEQRMPHGLLATGQKGIGKREFVWRFVAYLLC---LEKNQYGACGHCQSCQWLR- 79 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H D L L P+ I +D+IR ++ + S T G +VI++D D + Sbjct: 80 AGTHP--DLLVL-----PQGDS----IKIDDIRLLQEY-SQTKGHGV-KVIVLDGADTLT 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 AANA LK+LEEP V ILI+ +L TI+SR ++ + Sbjct: 127 LGAANAFLKTLEEPRDGVFLILITDHPSRLLPTIKSRVQTMPLS 170 >gi|157370154|ref|YP_001478143.1| DNA polymerase III subunit delta' [Serratia proteamaculans 568] gi|157321918|gb|ABV41015.1| DNA polymerase III, delta prime subunit [Serratia proteamaculans 568] Length = 335 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + L P+ GK + + V+ IR++ L A G +VI + + + AANALLK+LEE Sbjct: 77 HVLTPEKGK--SSLGVEPIRQLIEILYSHAQQGGAKVIWLPQAELLTEAAANALLKTLEE 134 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 PP+K F+L +L+T+RSRCL S E Sbjct: 135 PPEKTYFLLSCREPSRLLATLRSRCLYWHLASPDEQ 170 >gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110] gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110] Length = 692 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 21/172 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV----LQNPDFSKAPV 69 L G E I LS S R+ A LF G +G GK + A + ++ P + AP Sbjct: 25 LVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVEVP--TAAPC 82 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C + C + A D + + + N TG VD IR I Sbjct: 83 GQC--EVCRAITRGSA----LDVIEIDAASN--TG-------VDNIREIIERSQFAPVQC 127 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 128 RYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRC 179 >gi|313678825|ref|YP_004056565.1| DNA polymerase III subunits gamma and tau [Mycoplasma bovis PG45] gi|312950809|gb|ADR25404.1| DNA polymerase III, gamma and tau subunit [Mycoplasma bovis PG45] Length = 616 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 27/232 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G + I + L + ++ HA LF G +G+GK ++ +A + Sbjct: 8 RKYRPKCFDDVKGQDYIIQTLKNIIRNRKVSHAYLFCGPRGVGKTSVARIFANLINCYHN 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N D++K +C P + + + D + + + N VD IR +R Sbjct: 68 NDDYTK----LC------PLCAENENKTI-DIIEMDAASNN---------GVDSIRELRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G +++ +ID V +++ A NALLK+LEEPP +FI + I TI SR Sbjct: 108 KIQHLPSAGNYKIYIIDEVHMLSKGAFNALLKTLEEPPAHAIFIFATTDPQKIPLTILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ + L LEQ I + ++ A GS+ A+ I+ Sbjct: 168 VQRFNFRRMNNDTLVSQIKNILEQEGIRYDEESLPYIARLAAGSMRDALSII 219 >gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella anatipestifer DSM 15868] Length = 559 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 27/178 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ ALLF G +G+GK T R + D Sbjct: 9 RKYRPQEFDTVVGQSHITDTLEHAIAENQLAQALLFCGPRGVGKTTCA-RILARKINEKD 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + F Y + L+ + +VD+IR + + Sbjct: 68 ---------------------GATSEDGFSYNIFELDAASNN-----SVDDIRELTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 YAPQVGKYKVYIIDEVHMLSSQAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 >gi|119505876|ref|ZP_01627941.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2080] gi|119458304|gb|EAW39414.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2080] Length = 568 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFHEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++A D + + + K V++ R + Sbjct: 65 EVGVGSEPCGECG------SCREIAEGRSVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ ++ NALLK+LEEPP F+L + + +TI SR Sbjct: 110 NVQYAPSRARFKIYLIDEVHMLSNHSFNALLKTLEEPPPHAKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL 201 CL ++ + + LE++ Sbjct: 170 CLQFNLKNMLPEQVVEHLEKI 190 >gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] Length = 582 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ HA + G +G+GK T A G Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC + +A D L + + +TG V +IR Sbjct: 71 VGPDGDGGP----TTEPCGACEACRSIAEGRHVDVLEMDAA--SRTG-------VGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRC 181 SRC Sbjct: 178 LSRC 181 >gi|82544435|ref|YP_408382.1| DNA polymerase III subunit delta' [Shigella boydii Sb227] gi|81245846|gb|ABB66554.1| DNA polymerase III delta prime subunit [Shigella boydii Sb227] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|238897675|ref|YP_002923354.1| DNA polymerase III, delta prime subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465432|gb|ACQ67206.1| DNA polymerase III, delta prime subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 327 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 12/163 (7%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L + + GR HHALL +G GK L + + +L K C+ C Sbjct: 14 LVEQHILGRGHHALLIHALRGNGKNALIYGLSRWLLCQKRQGKKSCGQCHS--CHLM--- 68 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +A H L+ K + + + +D IR++ LS G RVI I V + Sbjct: 69 LAGHHPDCHLF-------KIKENQRNLGIDSIRQVIEKLSHHPQQGGARVISIPNVHDLT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 A NALLK+LEEPP+ F+L H ++ T++SRC + Sbjct: 122 VAAVNALLKTLEEPPKNTYFLLGCHTPSVLMPTLKSRCFCWRL 164 >gi|226303865|ref|YP_002763823.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4] gi|226182980|dbj|BAH31084.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4] Length = 748 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 37/210 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPASFAEVVGQEHVTAPLSTALDTGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT--------- 111 P + P +C D C SL P G +T Sbjct: 64 GP--TSTPCDVC--DSC-------------------VSLGPG-GTGNLDVTELDAASHGG 99 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R +RV +ID + NALLK +EEPP+ ++FI + Sbjct: 100 VDDTRELRDKAFHAPAASRYRVFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPE 159 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSR F L+ + + LE++ Sbjct: 160 KVLPTIRSRTHHYPFRLLAPSTMRGLLEKI 189 >gi|207857292|ref|YP_002243943.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709095|emb|CAR33428.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|282860160|ref|ZP_06269235.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282587049|gb|EFB92279.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 384 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 47/243 (19%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ------------NPDFSKAPV---RMCNPDP 76 R+ HA+LF G +G GK L +A ++L + D S+ + +PD Sbjct: 25 RVPHAILFSGPEGAGKMALAMDFACYLLTEGKPKDETSMFGDNDTSRDEAMLRKWEHPDL 84 Query: 77 --CSPFVKQMASHALHDFLYLSYSLNPKTGKWR------------------------TVI 110 P +K A + H + Y +WR +I Sbjct: 85 HFSYPTIKSAAMSSEHQPISTDY-----IKEWRELILQGSYFTMEQWMKLMKATTQQAII 139 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 T E + L+L ++ G ++V +I + MN +AN LK LEEPP +F+L+S A Sbjct: 140 TGAEADELSRKLALKSSQGGFKVAIIWRPERMNLTSANKFLKLLEEPPSGTIFLLVSEAP 199 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +L TIRSR I + + +AL + + + + ++A G+ +A++ + Sbjct: 200 EALLETIRSRTQRIDVKRIDNAAIEQALVEQRGIDEEMAHRIARLAN-GNWLKALETMDV 258 Query: 231 DCD 233 D + Sbjct: 259 DNE 261 >gi|308234127|ref|ZP_07664864.1| DNA polymerase III, delta' subunit [Atopobium vaginae DSM 15829] gi|328943648|ref|ZP_08241113.1| hypothetical protein HMPREF0091_10338 [Atopobium vaginae DSM 15829] gi|327491617|gb|EGF23391.1| hypothetical protein HMPREF0091_10338 [Atopobium vaginae DSM 15829] Length = 378 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 23/200 (11%) Query: 5 AFDPVYNQRLFG----HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 AFD + ++ L G + F Q Y ++ HA LF G G+G + +L Sbjct: 3 AFD-ITSENLLGVLALQAHVCSFFKQAYAQRQLSHAYLFIGNYGLGISE-ALDELAKMLL 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P D C+ + M H H ++ Y P+ + V + ++ + + Sbjct: 61 CPH---------GGDECACCKRIM--HKSHPDVHQFY---PQGAQGYVVEQIHDLLDVVH 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + A ++I+I + + ANALLK+LEEPP V F+L+S ++ +L T+ SR Sbjct: 107 RAPIQAKR---KLIVIHEAQSLGASCANALLKTLEEPPASVYFVLVSTSAAQVLQTVSSR 163 Query: 181 CLSIKFNSLSENNLYKALEQ 200 C I F +++ K +E+ Sbjct: 164 CQHIPFTFINQAQAAKLVER 183 >gi|157803380|ref|YP_001491929.1| DNA polymerase III subunit delta' [Rickettsia canadensis str. McKiel] gi|157784643|gb|ABV73144.1| DNA polymerase III subunit delta [Rickettsia canadensis str. McKiel] Length = 264 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++++IR+++ FL+ T+ ++V +I D MN NAAN+ LK LE+ P+ LI+ Sbjct: 70 ISIEQIRKLQDFLNKTSAVSGYKVAVIYSADLMNLNAANSCLKILEDVPKNSYIFLITSR 129 Query: 170 SPTILSTIRSRCLSIKFNSL---SENNLYKALEQLKIMGWDSKRDFV 213 + +I++TIRSRC I S ++N LY E ++ + D DF+ Sbjct: 130 AASIIATIRSRCFKINMRSSIHNTQNPLYS--EFIQPIADDKTLDFI 174 >gi|326577091|gb|EGE26985.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis O35E] Length = 323 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 17/164 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + RM H LL G++GIGK +R+ ++L K C +++ Sbjct: 24 LTGQFIEQRMPHGLLAAGQKGIGKREFVWRFVAYLLC---LEKNQYGACGHCQSCQWLR- 79 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H D L L P+ I +D+IR ++ + S T G +VI++D D + Sbjct: 80 AGTHP--DLLVL-----PQGDS----IKIDDIRLLQEY-SQTKGHGV-KVIVLDGADTLT 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 AANA LK+LEEP V ILI+ +L TI+SR ++ + Sbjct: 127 LGAANAFLKTLEEPRDGVFLILITDHPSRLLPTIKSRVQTMPLS 170 >gi|320186953|gb|EFW61666.1| DNA polymerase III delta prime subunit [Shigella flexneri CDC 796-83] Length = 334 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|239929815|ref|ZP_04686768.1| DNA polymerase III subunit delta' [Streptomyces ghanaensis ATCC 14672] gi|291438147|ref|ZP_06577537.1| DNA polymerase III subunit delta [Streptomyces ghanaensis ATCC 14672] gi|291341042|gb|EFE67998.1| DNA polymerase III subunit delta [Streptomyces ghanaensis ATCC 14672] Length = 401 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 37/277 (13%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMASHA 88 RM HA LF G G G+ R LQ +PD + V C D C Sbjct: 42 RMTHAWLFTGPPGAGR-NQAARAFAAALQCVSPDRALGGVPGCGFCDGC----------- 89 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L +++ + I V ++R +R + AN G W+VI+++ + +N +A Sbjct: 90 -HTALIGTHADVTTVAAVGSEILVKDMRDTVRKSFTAPAN-GRWQVILVEDAERLNEKSA 147 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 NA+LK++EEP + +++L + + +L TIRSRC + ++ S + + L Sbjct: 148 NAVLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLNLSTPSVDAVADML--------- 198 Query: 208 SKRDFVKIAAYGSVARAIKILHYDCDKIISS-------YIDLIHIPRQEYALQKMQQIAD 260 +R+ ++ +VARA + H D + +++ ++ +P + + + A Sbjct: 199 VRREGIEPDVAAAVARATQG-HVDRARRLATDPAARERRAAVLKLPLRVEDIGGALKAAQ 257 Query: 261 ELLSQDQKIAFDFLIEFILKEI--CKSAKAAALSGQL 295 EL+ + A E KE K+A AA G+L Sbjct: 258 ELVDAAAEDAKQLAEEMDTKETEELKAALGAAQGGRL 294 >gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamma and tau [Mycobacterium intracellulare ATCC 13950] Length = 615 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGK-TSSARILARSLNCAQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C + +A +A + G VD+ R +R Sbjct: 64 GP--TATPCGVC--DSC----QALAPNAPGSIDVVELDAASHGG-------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 109 RAFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 169 THHYPFRLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 >gi|331701728|ref|YP_004398687.1| DNA polymerase III subunit delta' [Lactobacillus buchneri NRRL B-30929] gi|329129071|gb|AEB73624.1| DNA polymerase III, delta prime subunit [Lactobacillus buchneri NRRL B-30929] Length = 336 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + + HA LF GE G G+ ++ A + + P C C+ V+ M Sbjct: 26 NNELSHAYLFTGEDGAGQFSVAIGVAMRLFCTNVQNGMP---CGK--CAECVRIMN---- 76 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 HD + + G+ I VD+IR ++ + +A G +V +I + M AAN+ Sbjct: 77 HD--HPDVVITEPDGQ---SIKVDQIRHVKSEFTKSAMEGSKKVFIISEAEKMTTGAANS 131 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LLK +EEP V+ LIS +L TI SR ++F SLS+ + + L+ Sbjct: 132 LLKFIEEPTGNVVSFLISQNRNLVLPTIISRTQVVEFPSLSKKQMVQELQ 181 >gi|229829736|ref|ZP_04455805.1| hypothetical protein GCWU000342_01833 [Shuttleworthia satelles DSM 14600] gi|229791725|gb|EEP27839.1| hypothetical protein GCWU000342_01833 [Shuttleworthia satelles DSM 14600] Length = 550 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V+ IR I ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + Sbjct: 113 VNNIREIIEEVAYPPTEGRYKVYIIDEVHMLSPGAYNALLKTLEEPPEYVIFILATTEVN 172 Query: 172 TILSTIRSRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 I TI SRC F+ +S L + +E+ + D D++ AA GS+ A+ + Sbjct: 173 KIPITILSRCQRYDFHRISVVTIAGRLRQLMEEEGLAVEDKAVDYIARAADGSMRDALSL 232 Query: 228 LHYDCDKIISSYI 240 + D+ I+ Y+ Sbjct: 233 M----DQCIAFYL 241 >gi|134096866|ref|YP_001102527.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909489|emb|CAL99601.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] Length = 816 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 ++ P DPC +A L P+ G V+ VD+ Sbjct: 63 CAQGPTA----DPCGECDSCVA-------------LAPEGGGSVDVVELDAASHGGVDDT 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +R+ +ID + NALLK +EEPP+ ++F+ + +L+ Sbjct: 106 RELRDRAFFAPAQSRYRIFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLT 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TIRSR F + + + LE++ Sbjct: 166 TIRSRTHHYPFRLMPPGVMRELLERI 191 >gi|16764556|ref|NP_460171.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992016|ref|ZP_02573115.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262034|ref|ZP_03162108.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16419718|gb|AAL20130.1| DNA polymerase III, delta prime subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240289|gb|EDY22909.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329743|gb|EDZ16507.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246413|emb|CBG24222.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992976|gb|ACY87861.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157742|emb|CBW17234.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912189|dbj|BAJ36163.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223816|gb|EFX48879.1| DNA polymerase III delta prime subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129470|gb|ADX16900.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|15801216|ref|NP_287233.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 EDL933] gi|15830731|ref|NP_309504.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 str. Sakai] gi|24112505|ref|NP_707015.1| DNA polymerase III subunit delta' [Shigella flexneri 2a str. 301] gi|30062633|ref|NP_836804.1| DNA polymerase III subunit delta' [Shigella flexneri 2a str. 2457T] gi|110805113|ref|YP_688633.1| DNA polymerase III subunit delta' [Shigella flexneri 5 str. 8401] gi|168783468|ref|ZP_02808475.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4076] gi|187733488|ref|YP_001880731.1| DNA polymerase III subunit delta' [Shigella boydii CDC 3083-94] gi|194433685|ref|ZP_03065961.1| DNA polymerase III, delta' subunit [Shigella dysenteriae 1012] gi|195938858|ref|ZP_03084240.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 str. EC4024] gi|208806400|ref|ZP_03248737.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4206] gi|208815616|ref|ZP_03256795.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4045] gi|208822365|ref|ZP_03262684.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4042] gi|209398319|ref|YP_002269943.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4115] gi|217328453|ref|ZP_03444535.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. TW14588] gi|254792481|ref|YP_003077318.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 str. TW14359] gi|261226997|ref|ZP_05941278.1| DNA polymerase III, delta prime subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256231|ref|ZP_05948764.1| DNA polymerase III, delta prime subunit [Escherichia coli O157:H7 str. FRIK966] gi|291282119|ref|YP_003498937.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str. CB9615] gi|12514643|gb|AAG55845.1|AE005319_14 DNA polymerase III, delta prime subunit [Escherichia coli O157:H7 str. EDL933] gi|13360941|dbj|BAB34900.1| DNA polymerase III delta prime subunit [Escherichia coli O157:H7 str. Sakai] gi|24051394|gb|AAN42722.1| DNA polymerase III, delta prime subunit [Shigella flexneri 2a str. 301] gi|30040879|gb|AAP16610.1| DNA polymerase III, delta prime subunit [Shigella flexneri 2a str. 2457T] gi|110614661|gb|ABF03328.1| DNA polymerase III, delta prime subunit [Shigella flexneri 5 str. 8401] gi|187430480|gb|ACD09754.1| DNA polymerase III, delta' subunit [Shigella boydii CDC 3083-94] gi|188999126|gb|EDU68112.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4076] gi|194418114|gb|EDX34207.1| DNA polymerase III, delta' subunit [Shigella dysenteriae 1012] gi|208726201|gb|EDZ75802.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4206] gi|208732264|gb|EDZ80952.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4045] gi|208737850|gb|EDZ85533.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4042] gi|209159719|gb|ACI37152.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. EC4115] gi|209773148|gb|ACI84886.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|209773150|gb|ACI84887.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|209773152|gb|ACI84888.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|209773154|gb|ACI84889.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|209773156|gb|ACI84890.1| DNA polymerase III delta prime subunit [Escherichia coli] gi|217318880|gb|EEC27306.1| DNA polymerase III, delta' subunit [Escherichia coli O157:H7 str. TW14588] gi|254591881|gb|ACT71242.1| DNA polymerase III, delta prime subunit [Escherichia coli O157:H7 str. TW14359] gi|290761992|gb|ADD55953.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str. CB9615] gi|313650448|gb|EFS14855.1| DNA polymerase III subunit delta' [Shigella flexneri 2a str. 2457T] gi|320174250|gb|EFW49411.1| DNA polymerase III delta prime subunit [Shigella dysenteriae CDC 74-1112] gi|320179202|gb|EFW54160.1| DNA polymerase III delta prime subunit [Shigella boydii ATCC 9905] gi|320188106|gb|EFW62771.1| DNA polymerase III delta prime subunit [Escherichia coli O157:H7 str. EC1212] gi|320643111|gb|EFX12312.1| DNA polymerase III subunit delta' [Escherichia coli O157:H- str. 493-89] gi|320648569|gb|EFX17224.1| DNA polymerase III subunit delta' [Escherichia coli O157:H- str. H 2687] gi|320653883|gb|EFX21957.1| DNA polymerase III subunit delta' [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659363|gb|EFX26932.1| DNA polymerase III subunit delta' [Escherichia coli O55:H7 str. USDA 5905] gi|326339321|gb|EGD63135.1| DNA polymerase III delta prime subunit [Escherichia coli O157:H7 str. 1125] gi|326340402|gb|EGD64205.1| DNA polymerase III delta prime subunit [Escherichia coli O157:H7 str. 1044] gi|332092848|gb|EGI97916.1| DNA polymerase III subunit delta' [Shigella dysenteriae 155-74] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|324007853|gb|EGB77072.1| DNA polymerase III, delta' subunit [Escherichia coli MS 57-2] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|296113041|ref|YP_003626979.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis RH4] gi|295920735|gb|ADG61086.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis RH4] gi|326560419|gb|EGE10801.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis 7169] gi|326564023|gb|EGE14268.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis 103P14B1] gi|326564036|gb|EGE14280.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis 12P80B1] gi|326565846|gb|EGE16008.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis BC1] gi|326570501|gb|EGE20541.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis BC8] gi|326571184|gb|EGE21208.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis BC7] gi|326576138|gb|EGE26054.1| DNA polymerase III delta prime subunit [Moraxella catarrhalis 101P30B1] Length = 323 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 17/164 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L+ + RM H LL G++GIGK +R+ ++L K C +++ Sbjct: 24 LTGQFIEQRMPHGLLAAGQKGIGKREFVWRFVAYLLC---LEKNQYGACGHCQSCQWLR- 79 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +H D L L P+ I +D+IR ++ + S T G +VI++D D + Sbjct: 80 AGTHP--DLLVL-----PQGDS----IKIDDIRLLQEY-SQTKGHGV-KVIVLDGADTLT 126 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 AANA LK+LEEP V ILI+ +L TI+SR ++ + Sbjct: 127 LGAANAFLKTLEEPRDGVFLILITDHPSRLLPTIKSRVQTMPLS 170 >gi|218704510|ref|YP_002412029.1| DNA polymerase III subunit delta' [Escherichia coli UMN026] gi|293404387|ref|ZP_06648381.1| DNA polymerase III subunit delta [Escherichia coli FVEC1412] gi|298380164|ref|ZP_06989769.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302] gi|300896859|ref|ZP_07115351.1| DNA polymerase III, delta' subunit [Escherichia coli MS 198-1] gi|306814052|ref|ZP_07448225.1| DNA polymerase III subunit delta' [Escherichia coli NC101] gi|331672614|ref|ZP_08373403.1| DNA polymerase III subunit delta' [Escherichia coli TA280] gi|218431607|emb|CAR12486.1| DNA polymerase III, delta prime subunit [Escherichia coli UMN026] gi|291428973|gb|EFF01998.1| DNA polymerase III subunit delta [Escherichia coli FVEC1412] gi|298279862|gb|EFI21370.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302] gi|300359304|gb|EFJ75174.1| DNA polymerase III, delta' subunit [Escherichia coli MS 198-1] gi|305852689|gb|EFM53137.1| DNA polymerase III subunit delta' [Escherichia coli NC101] gi|331070257|gb|EGI41623.1| DNA polymerase III subunit delta' [Escherichia coli TA280] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|170758221|ref|YP_001785387.1| DNA polymerase III subunit delta' [Clostridium botulinum A3 str. Loch Maree] gi|169405210|gb|ACA53621.1| putative DNA polymerase III, delta prime subunit [Clostridium botulinum A3 str. Loch Maree] Length = 314 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I+ + G+ HA + GE GIGK+ + A +L+ Sbjct: 6 IIGHENIKNRIKNSIIKGKFSHASIIVGEDGIGKSIIAKEIAIIILEKS----------- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Q S+A D + +N K+ I +D+IR + ++ G +V Sbjct: 55 ---------QRRSYA--DLIEFK-PINKKS------IGIDDIRNLIEEINKKPIEGNKKV 96 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 I+I + + A NA LK++EEPP+ V IL+ +L TI+SRC K N L Sbjct: 97 IIIYKSELITEVAQNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRL 152 >gi|110641275|ref|YP_669005.1| DNA polymerase III subunit delta' [Escherichia coli 536] gi|300982520|ref|ZP_07176170.1| DNA polymerase III, delta' subunit [Escherichia coli MS 200-1] gi|110342867|gb|ABG69104.1| DNA polymerase III, delta' subunit [Escherichia coli 536] gi|300307166|gb|EFJ61686.1| DNA polymerase III, delta' subunit [Escherichia coli MS 200-1] gi|324013269|gb|EGB82488.1| DNA polymerase III, delta' subunit [Escherichia coli MS 60-1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|16760077|ref|NP_455694.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142152|ref|NP_805494.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168233078|ref|ZP_02658136.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239103|ref|ZP_02664161.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168264292|ref|ZP_02686265.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194471161|ref|ZP_03077145.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737080|ref|YP_002114206.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198245939|ref|YP_002215937.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390011|ref|ZP_03216622.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930699|ref|ZP_03221572.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425025|ref|ZP_03357775.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646377|ref|ZP_03376430.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829611|ref|ZP_06547166.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25326352|pir||AB0643 DNA polymerase III, delta' chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502371|emb|CAD08325.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29137781|gb|AAO69343.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194457525|gb|EDX46364.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712582|gb|ACF91803.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288157|gb|EDY27544.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940455|gb|ACH77788.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602456|gb|EDZ01002.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320158|gb|EDZ05362.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332717|gb|EDZ19481.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205347285|gb|EDZ33916.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616576|gb|EFY13485.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619909|gb|EFY16783.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622477|gb|EFY19322.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629406|gb|EFY26183.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633923|gb|EFY30661.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636853|gb|EFY33556.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641347|gb|EFY37986.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645111|gb|EFY41640.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652276|gb|EFY48632.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655627|gb|EFY51929.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660932|gb|EFY57162.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665483|gb|EFY61671.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667540|gb|EFY63701.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673665|gb|EFY69767.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677591|gb|EFY73655.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679744|gb|EFY75783.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687216|gb|EFY83188.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194003|gb|EFZ79204.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199412|gb|EFZ84505.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202427|gb|EFZ87469.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208860|gb|EFZ93798.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213787|gb|EFZ98567.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217834|gb|EGA02549.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221678|gb|EGA06090.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224738|gb|EGA09006.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229636|gb|EGA13759.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232861|gb|EGA16957.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240103|gb|EGA24147.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242910|gb|EGA26931.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246825|gb|EGA30795.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323255541|gb|EGA39300.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261607|gb|EGA45184.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266969|gb|EGA50454.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272073|gb|EGA55487.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623685|gb|EGE30030.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|320664498|gb|EFX31649.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 str. LSU-61] Length = 332 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|320637550|gb|EFX07350.1| DNA polymerase III subunit delta' [Escherichia coli O157:H7 str. G5101] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|331682604|ref|ZP_08383223.1| DNA polymerase III subunit delta' [Escherichia coli H299] gi|331080235|gb|EGI51414.1| DNA polymerase III subunit delta' [Escherichia coli H299] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|193214050|ref|YP_001995249.1| DNA-directed DNA polymerase [Chloroherpeton thalassium ATCC 35110] gi|193087527|gb|ACF12802.1| DNA-directed DNA polymerase [Chloroherpeton thalassium ATCC 35110] Length = 389 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 94/224 (41%), Gaps = 37/224 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +R+ G E L + + R+ +A LF G +G+GK + A VL N D A + Sbjct: 4 ERINGQERQISVLRRAIKTNRLPNAFLFTGPEGVGKEAVAIELA-KVL-NCDSPNALLTA 61 Query: 72 CNPDPCSPFVKQMA-SHALHDFLY-LSYSLNPKTGKW------------RTVITVDEIRR 117 + C K A H +F++ + L KT + R ++E RR Sbjct: 62 EACEKCESCKKISALKHPNLEFIFPVEKILLEKTSETGADRAKQEDALERMKALLEEKRR 121 Query: 118 IRY---------------FLSLTANTGYW------RVIMIDPVDGMNRNAANALLKSLEE 156 Y L L Y RV ++ + MN +AN LLK LEE Sbjct: 122 NPYHSLRMDKAMGILKDQILLLQEKAAYKPLAGKKRVFILSQAESMNEASANKLLKLLEE 181 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 PP VLFIL+S +L TI SRC ++F+ L + + LE+ Sbjct: 182 PPPYVLFILVSSQPEMLLPTIVSRCQPLRFSKLRPEEIREFLER 225 >gi|194444229|ref|YP_002040455.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402892|gb|ACF63114.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|62179721|ref|YP_216138.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584292|ref|YP_002638090.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127354|gb|AAX65057.1| DNA polymerase III, delta prime subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468819|gb|ACN46649.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714191|gb|EFZ05762.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|331646356|ref|ZP_08347459.1| DNA polymerase III subunit delta' [Escherichia coli M605] gi|330910914|gb|EGH39424.1| DNA polymerase 3 delta prime subunit [Escherichia coli AA86] gi|331045108|gb|EGI17235.1| DNA polymerase III subunit delta' [Escherichia coli M605] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|331662507|ref|ZP_08363430.1| DNA polymerase III subunit delta' [Escherichia coli TA143] gi|331060929|gb|EGI32893.1| DNA polymerase III subunit delta' [Escherichia coli TA143] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|238754389|ref|ZP_04615745.1| DNA polymerase III subunit delta' [Yersinia ruckeri ATCC 29473] gi|238707422|gb|EEP99783.1| DNA polymerase III subunit delta' [Yersinia ruckeri ATCC 29473] Length = 335 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 12/161 (7%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + +GR HHALL G G L + + ++ + C+ + M + Sbjct: 18 HIAGRGHHALLVHALPGNGADALIYGLSRWLMCQQRQGEKSCGECHS------CRLMLAG 71 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D+ + L P+ GK + I V+ +R + L A G +VI + + + AA Sbjct: 72 NHPDW----HVLTPEKGK--SSIGVERVRTLIETLYSHAQQGGAKVIWLPQAESLTDAAA 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 NALLK+LEEPP+K F+L +L T+RSRC F+S Sbjct: 126 NALLKTLEEPPEKTYFLLRCVEPSRLLPTLRSRCFYWHFSS 166 >gi|218689051|ref|YP_002397263.1| DNA polymerase III subunit delta' [Escherichia coli ED1a] gi|218426615|emb|CAR07443.1| DNA polymerase III, delta prime subunit [Escherichia coli ED1a] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|168822303|ref|ZP_02834303.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341250|gb|EDZ28014.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086359|emb|CBY96132.1| DNA polymerase III, delta prime subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|26247241|ref|NP_753281.1| DNA polymerase III subunit delta' [Escherichia coli CFT073] gi|227886545|ref|ZP_04004350.1| DNA polymerase III subunit delta' [Escherichia coli 83972] gi|300974437|ref|ZP_07172614.1| DNA polymerase III, delta' subunit [Escherichia coli MS 45-1] gi|301051115|ref|ZP_07197948.1| DNA polymerase III, delta' subunit [Escherichia coli MS 185-1] gi|26107642|gb|AAN79841.1|AE016759_115 DNA polymerase III, delta' subunit [Escherichia coli CFT073] gi|227836749|gb|EEJ47215.1| DNA polymerase III subunit delta' [Escherichia coli 83972] gi|300297241|gb|EFJ53626.1| DNA polymerase III, delta' subunit [Escherichia coli MS 185-1] gi|300410571|gb|EFJ94109.1| DNA polymerase III, delta' subunit [Escherichia coli MS 45-1] gi|307553100|gb|ADN45875.1| DNA polymerase III, delta prime subunit [Escherichia coli ABU 83972] gi|315291042|gb|EFU50405.1| DNA polymerase III, delta' subunit [Escherichia coli MS 153-1] gi|320197574|gb|EFW72187.1| DNA polymerase III delta prime subunit [Escherichia coli WV_060327] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|213163609|ref|ZP_03349319.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 322 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 2 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 54 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 55 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 106 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 107 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 147 >gi|229009542|ref|ZP_04166769.1| DNA polymerase III, delta prime subunit [Bacillus mycoides DSM 2048] gi|228751686|gb|EEM01485.1| DNA polymerase III, delta prime subunit [Bacillus mycoides DSM 2048] Length = 327 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 75/191 (39%), Gaps = 38/191 (19%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC--------- 72 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTNCRRIDSG 76 Query: 73 ---NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 N P + +HD L +S KTG L AN Sbjct: 77 NYPNLHIVKPDGLSIKKQQIHD-LQEEFS---KTG-------------------LEANK- 112 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V +I+ D M NAAN LLK LEEP IL++ S IL+TI SRC + F L Sbjct: 113 --KVYIIEHADRMTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPL 170 Query: 190 SENNLYKALEQ 200 +L K LE+ Sbjct: 171 PTESLIKRLEE 181 >gi|332089299|gb|EGI94405.1| DNA polymerase III, subunit delta' [Shigella boydii 5216-82] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|74311660|ref|YP_310079.1| DNA polymerase III subunit delta' [Shigella sonnei Ss046] gi|301023304|ref|ZP_07187099.1| DNA polymerase III, delta' subunit [Escherichia coli MS 69-1] gi|73855137|gb|AAZ87844.1| DNA polymerase III delta prime subunit [Shigella sonnei Ss046] gi|300397073|gb|EFJ80611.1| DNA polymerase III, delta' subunit [Escherichia coli MS 69-1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|61679664|pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex gi|61679669|pdb|1XXH|J Chain J, Atpgs Bound E. Coli Clamp Loader Complex Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGXGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + VD +R + L+ A G +V+ Sbjct: 67 -----LXQAGTHP--DY----YTLAPEKGK--NTLGVDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|215486310|ref|YP_002328741.1| DNA polymerase III subunit delta' [Escherichia coli O127:H6 str. E2348/69] gi|312968824|ref|ZP_07783031.1| DNA polymerase III subunit delta' [Escherichia coli 2362-75] gi|215264382|emb|CAS08739.1| DNA polymerase III, delta prime subunit [Escherichia coli O127:H6 str. E2348/69] gi|222032852|emb|CAP75591.1| DNA polymerase III subunit delta' [Escherichia coli LF82] gi|312286226|gb|EFR14139.1| DNA polymerase III subunit delta' [Escherichia coli 2362-75] gi|312945661|gb|ADR26488.1| DNA polymerase III subunit delta' [Escherichia coli O83:H1 str. NRG 857C] gi|323190519|gb|EFZ75792.1| DNA polymerase III subunit delta' [Escherichia coli RN587/1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|1732451|dbj|BAA11313.1| hypothetical protein ORF306 [Leptolyngbya boryana IAM M-101] Length = 306 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 11/188 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L R+ A LF G GIGK+ A + + R+ N Sbjct: 7 LIGQSQAVELLESAIAQDRLAPAYLFVGSPGIGKS-----LAAECFLETLLASSRSRILN 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTG---KWRTVITVDEIRRIRYFLSLTANTGY 130 + P +A LH LS + G K +I +++IR + FLS Sbjct: 62 RN--HPDWFGVAPTYLHQGKRLSAAEAEAAGVKRKTPPMIRLEQIREVSQFLSRPPLEAV 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I+ + M AANALLK+LEE P + IL++ + ++L TI SRC I F+ L Sbjct: 120 RSTVVIEQAETMPEAAANALLKTLEE-PGRATIILLAPSLESVLPTIVSRCQRIPFSRLD 178 Query: 191 ENNLYKAL 198 ++ + L Sbjct: 179 ATSMAEVL 186 >gi|159902684|ref|YP_001550028.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9211] gi|159887860|gb|ABX08074.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9211] Length = 325 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 18/195 (9%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN----PDFSKAPVRMCNPDPC- 77 L++ ++ LF G QG+G+ + R+ ++ P K + +PD Sbjct: 18 ILTEVIHKNKIAPGYLFSGPQGVGQRIVTLRFLEGLITGGDVEPTIRKRLESLNHPDLLW 77 Query: 78 --SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 ++ Q + L ++N + I +D+I+ ++ FL +++ Sbjct: 78 VEPSYISQ--GRVIKQSLAQKDNININA---ISKIRLDQIKELKTFLGKRTIEAKLAMVV 132 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+ + MN A+NALLK+LEE L ILIS S +LSTI+SRC I F L Y Sbjct: 133 IEDAEKMNEAASNALLKTLEE-VNNGLIILISSRSENLLSTIKSRCHEIPFKPLK----Y 187 Query: 196 KALEQLKI-MGWDSK 209 +LE+L I G D+K Sbjct: 188 HSLEELFINYGEDNK 202 >gi|157160625|ref|YP_001457943.1| DNA polymerase III subunit delta' [Escherichia coli HS] gi|170020506|ref|YP_001725460.1| DNA polymerase III subunit delta' [Escherichia coli ATCC 8739] gi|188495816|ref|ZP_03003086.1| DNA polymerase III, delta' subunit [Escherichia coli 53638] gi|253773878|ref|YP_003036709.1| DNA polymerase III subunit delta' [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161205|ref|YP_003044313.1| DNA polymerase III subunit delta' [Escherichia coli B str. REL606] gi|256018645|ref|ZP_05432510.1| DNA polymerase III subunit delta' [Shigella sp. D9] gi|260843339|ref|YP_003221117.1| DNA polymerase III, delta prime subunit [Escherichia coli O103:H2 str. 12009] gi|297516809|ref|ZP_06935195.1| DNA polymerase III subunit delta' [Escherichia coli OP50] gi|300816799|ref|ZP_07097019.1| DNA polymerase III, delta' subunit [Escherichia coli MS 107-1] gi|307310124|ref|ZP_07589774.1| DNA polymerase III, delta prime subunit [Escherichia coli W] gi|312971235|ref|ZP_07785413.1| DNA polymerase III subunit delta' [Escherichia coli 1827-70] gi|157066305|gb|ABV05560.1| DNA polymerase III, delta' subunit [Escherichia coli HS] gi|169755434|gb|ACA78133.1| DNA polymerase III, delta prime subunit [Escherichia coli ATCC 8739] gi|188491015|gb|EDU66118.1| DNA polymerase III, delta' subunit [Escherichia coli 53638] gi|242376902|emb|CAQ31620.1| DNA polymerase III, delta prime subunit, subunit of DNA polymerase III, preinitiation complex and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253324922|gb|ACT29524.1| DNA polymerase III, delta prime subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973106|gb|ACT38777.1| DNA polymerase III subunit delta' [Escherichia coli B str. REL606] gi|253977320|gb|ACT42990.1| DNA polymerase III subunit delta' [Escherichia coli BL21(DE3)] gi|257758486|dbj|BAI29983.1| DNA polymerase III, delta prime subunit [Escherichia coli O103:H2 str. 12009] gi|300530573|gb|EFK51635.1| DNA polymerase III, delta' subunit [Escherichia coli MS 107-1] gi|306909842|gb|EFN40336.1| DNA polymerase III, delta prime subunit [Escherichia coli W] gi|310336437|gb|EFQ01623.1| DNA polymerase III subunit delta' [Escherichia coli 1827-70] gi|315060376|gb|ADT74703.1| DNA polymerase III, delta prime subunit [Escherichia coli W] gi|323163641|gb|EFZ49463.1| DNA polymerase III subunit delta' [Escherichia coli E128010] gi|323379064|gb|ADX51332.1| DNA polymerase III, delta prime subunit [Escherichia coli KO11] gi|323947598|gb|EGB43602.1| DNA polymerase III [Escherichia coli H120] gi|323962698|gb|EGB58276.1| DNA polymerase III [Escherichia coli H489] gi|323973312|gb|EGB68501.1| DNA polymerase III [Escherichia coli TA007] gi|332102066|gb|EGJ05412.1| DNA polymerase III subunit delta [Shigella sp. D9] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|281600515|gb|ADA73499.1| DNA polymerase III delta prime subunit [Shigella flexneri 2002017] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NTLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|281178208|dbj|BAI54538.1| DNA polymerase III delta' subunit [Escherichia coli SE15] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|242279902|ref|YP_002992031.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio salexigens DSM 2638] gi|242122796|gb|ACS80492.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio salexigens DSM 2638] Length = 638 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G E ++ LS+ ++ A LF G +G+GK T+ +A + + P C D Sbjct: 20 GQEAVKTILSRAAAQDKVAPAYLFSGTRGVGKTTIARIFAKALNCKNAPTAEPCNEC--D 77 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C +Q+ + D + + + + K VD+ RR++ + ++V + Sbjct: 78 NC----RQITAGVGVDVVEIDAASHGK---------VDDARRLKEDIGYAPIEFRYKVFI 124 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ID + A NALLK+LEEPP FI+ + + +TI SRC F L+ + L Sbjct: 125 IDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHYAFKMLTNDELI 184 Query: 196 KALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 L + +I D + GSV ++ +L Sbjct: 185 AHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLL 221 >gi|238910979|ref|ZP_04654816.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|229015434|ref|ZP_04172436.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1273] gi|229021639|ref|ZP_04178226.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1272] gi|228739642|gb|EEL90051.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1272] gi|228745853|gb|EEL95853.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1273] Length = 327 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 74/179 (41%), Gaps = 14/179 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L P +C C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCLQRNGVEPCHVCTN--CRRI- 73 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 H L++ + P I +I+ ++ S T +V +I+ D Sbjct: 74 ----DSGNHPNLHI---VKPDG----LSIKKQQIQDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L K LE+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIKRLEE 181 >gi|56961834|ref|YP_173556.1| DNA polymerase III subunit delta' [Bacillus clausii KSM-K16] gi|56908068|dbj|BAD62595.1| DNA polymerase III delta' subunit HolB [Bacillus clausii KSM-K16] Length = 332 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 20/170 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEGE G GK + A F K +PC HA D Sbjct: 29 RLAHAYLFEGEAGSGKHEVALLMAKRF-----FCK---EHNGAEPC---------HACSD 71 Query: 92 FLYLSYSLNP---KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 L + + +P + I ++I ++ + +V ++ VD M +AAN Sbjct: 72 CLRIEHGNHPDVHQVAPDGQSIKKEQIEYLQKEFTYRGMESAAKVYIVSHVDKMTASAAN 131 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +LLK LEEP + L IL++ +IL TIRSR ++F S+ + L Sbjct: 132 SLLKFLEEPQGQTLAILLTENGASILPTIRSRAQQMRFLPPSQTQIASKL 181 >gi|300902490|ref|ZP_07120471.1| DNA polymerase III, delta' subunit [Escherichia coli MS 84-1] gi|300918705|ref|ZP_07135283.1| DNA polymerase III, delta' subunit [Escherichia coli MS 115-1] gi|301305667|ref|ZP_07211756.1| DNA polymerase III, delta' subunit [Escherichia coli MS 124-1] gi|300405426|gb|EFJ88964.1| DNA polymerase III, delta' subunit [Escherichia coli MS 84-1] gi|300414140|gb|EFJ97450.1| DNA polymerase III, delta' subunit [Escherichia coli MS 115-1] gi|300839095|gb|EFK66855.1| DNA polymerase III, delta' subunit [Escherichia coli MS 124-1] gi|315253899|gb|EFU33867.1| DNA polymerase III, delta' subunit [Escherichia coli MS 85-1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|229159206|ref|ZP_04287231.1| DNA polymerase III, delta prime subunit [Bacillus cereus R309803] gi|228624221|gb|EEK81022.1| DNA polymerase III, delta prime subunit [Bacillus cereus R309803] Length = 327 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L K L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIKRLQ 180 >gi|315657727|ref|ZP_07910607.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491524|gb|EFU81135.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 798 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G E + K L +GR++HA LF G +G GK T A + Q Sbjct: 7 RRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + G VD+ R +R Sbjct: 67 P--TATPCGTC--DSC----RDLATGGSGSLDVIEIDAASHGG-------VDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ L + L + D V A GSV ++ IL Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL 222 >gi|313677647|ref|YP_004055643.1| DNA polymerase iii, subunits gamma and tau [Marivirga tractuosa DSM 4126] gi|312944345|gb|ADR23535.1| DNA polymerase III, subunits gamma and tau [Marivirga tractuosa DSM 4126] Length = 369 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 27/198 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L + + +LLF G +G+GK T Sbjct: 9 RKYRPKGFDEVVGQKHITTTLKNAIDNDHLAQSLLFCGPRGVGKTT-------------- 54 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C+ + ++ + D + S SLN + +VD++R + + Sbjct: 55 -------------CARILARLINDFDVDNMEGSSSLNIYELDAASNNSVDDVRNLIDKVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++V +ID V ++ A NA LK+LEEPP +FIL + ++ TI SRC Sbjct: 102 VPPQHGKYKVYIIDEVHMLSNAAFNAFLKTLEEPPSYAIFILATTEKHKVIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQL 201 FN + +++ L+++ Sbjct: 162 YDFNRIKVSDISDHLKEI 179 >gi|258404639|ref|YP_003197381.1| DNA polymerase III, subunits gamma and tau [Desulfohalobium retbaense DSM 5692] gi|257796866|gb|ACV67803.1| DNA polymerase III, subunits gamma and tau [Desulfohalobium retbaense DSM 5692] Length = 538 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 21/228 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G + + LS+ ++ A LF G +G+GK T+ A + + Sbjct: 10 YRPQTFSTVVGQKQVRTILSRAAAENQVAPAYLFSGTRGVGKTTVARILAKAINCEQGPA 69 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C +++ D + + + + TG VD +R+++ + Sbjct: 70 SEPCNQCR------HCREITQGTGVDVVEIDGASH--TG-------VDHVRKLKEDVGYA 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++VI+ID +++ A NALLK+LEEPP + +FI+ + +TI SRC Sbjct: 115 PLSCRYKVIIIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHI 174 Query: 186 FNSLSE----NNLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKIL 228 F L + ++L + LE I M ++ R + A GSV A+ +L Sbjct: 175 FQRLRQEELTDHLRRVLENEAIEMDAEAVRLIARKGA-GSVRDAMSLL 221 >gi|225018615|ref|ZP_03707807.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum DSM 5476] gi|224948609|gb|EEG29818.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum DSM 5476] Length = 536 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + I L +G + HA LF G +G GK T A V Sbjct: 7 RKWRPKSFEDVLSQPHITTTLINEIKTGHIAHAYLFTGSRGTGKTTCSKILAKAVNCLHP 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + + ++ D + + + N VD IR +R + Sbjct: 67 VDGEPCHECE------CCRGIEDGSILDVVEIDAASNNG---------VDNIRELRDEAN 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T + +RV +ID ++ A NALLK +EEPP V+FIL + + +TI SRC Sbjct: 112 FTPVSCKYRVYIIDEAHMLSTGAFNALLKIMEEPPPHVIFILATTEVHKVPATILSRCQR 171 Query: 184 IKFNSLSENNLYKAL 198 F + ++ L Sbjct: 172 FDFRRIKAEDIVAQL 186 >gi|212224565|ref|YP_002307801.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1] gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1] Length = 326 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 39/229 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E I K L Y +G M H LLF G G+GK T A + Sbjct: 19 YRPQRLEDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF------ 71 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 H H+FL L+ S R + + E +++ F Sbjct: 72 -------------------GEHWRHNFLELNAS------DERGINVIRE--KVKEFARTK 104 Query: 126 ANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G +++I +D D + ++A AL +++E V FIL + S I+ I+SRC Sbjct: 105 PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIF 164 Query: 185 KFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 +F L++N++ K ++ + + G + D ++ Y G + RAI +L Sbjct: 165 RFRPLNDNDIAKRIKYIAENEGLELTEDGLQALLYVAEGDLRRAINVLQ 213 >gi|145219538|ref|YP_001130247.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris vibrioformis DSM 265] gi|145205702|gb|ABP36745.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeovibrioides DSM 265] Length = 612 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 25/246 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG---- 56 +I R + P + E I + + R+ H +F G +G+GK T +A Sbjct: 5 VIARKYRPAKFADITAQEHITRTIQNSLRMERVGHGYIFSGLRGVGKTTAARVFAKALNC 64 Query: 57 -HVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 ++++ D+ + C + DF S+N + +VD+I Sbjct: 65 QRMIEDADWLRDVTEPCG-----------ECESCRDF-DAGTSMNIAEFDAASNNSVDDI 112 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R + G +RV +ID V ++ A NA LK+LEEPP +FI + I + Sbjct: 113 RTLRDNVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILHYD 231 TI SRC F + + + L+ + + G D +++ A GS+ A IL Sbjct: 173 TIASRCQRFNFKRIPLDAIQTQLQGICEAEGIKVDADALQLVSRKAQGSMRDAQSIL--- 229 Query: 232 CDKIIS 237 D++I+ Sbjct: 230 -DQVIA 234 >gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer RA-GD] Length = 347 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 27/198 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ ALLF G +G+GK T Sbjct: 9 RKYRPQEFDTVVGQSHITDTLEHAIAENQLAQALLFCGPRGVGKTTC------------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ R N ++ + + F Y + L+ + +VD+IR + + Sbjct: 56 -ARILARKIN--------EKDGATSEDGFSYNIFELDAASNN-----SVDDIRELTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 YAPQVGKYKVYIIDEVHMLSSQAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLSENNLYKALEQL 201 F ++ ++ L ++ Sbjct: 162 YDFKRITIEDIQAHLRKI 179 >gi|300928350|ref|ZP_07143884.1| DNA polymerase III, delta' subunit [Escherichia coli MS 187-1] gi|300463608|gb|EFK27101.1| DNA polymerase III, delta' subunit [Escherichia coli MS 187-1] Length = 334 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NALGIDAVREVAEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|302336481|ref|YP_003801688.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084] gi|301320321|gb|ADK68808.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084] Length = 732 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 34/198 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF---------RYAGHVLQNPDF 64 + G + + L GR HA LF G +G GK T+ R AGH+ PD Sbjct: 16 VVGQQHVVSTLEHAVLEGRTSHAYLFCGPRGTGKTTMARLLAKALMCERGAGHL---PDG 72 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLS 123 S R+ +AS D L + +TG VD +R I +S Sbjct: 73 SCEQCRL------------IASGDHPDVYELDAAS--RTG-------VDNVREEIISRVS 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V + A NALLK+LEEPP+ LF+L + I TI SR Sbjct: 112 YAPVRGGYKVYIIDEVHMLTTAAFNALLKTLEEPPEHTLFVLCTTDPQKIPETILSRVQR 171 Query: 184 IKFNSLSENNLYKALEQL 201 F+++ +++ L ++ Sbjct: 172 FDFHAIGNDDIKAHLTRV 189 >gi|229027879|ref|ZP_04184034.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1271] gi|228733393|gb|EEL84220.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1271] Length = 327 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F +L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRALPTESLIRRLQ 180 >gi|124024336|ref|YP_001018643.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9303] gi|123964622|gb|ABM79378.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9303] Length = 326 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 27/182 (14%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ A LF G G+G++ R+ V+ + P +++ + Sbjct: 31 GRLAPAYLFSGPDGVGRSLAALRFLEGVI------------SSGKPALRERRRLEAFNHP 78 Query: 91 DFLYLSYS------LNPKT-----GKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMI 136 D L++ + L PK+ G R + +++IR + FL +++I Sbjct: 79 DLLWVEPTYQHQGRLVPKSQAEEEGVSRRSPPQVRLEQIRGVTRFLGRRPVEAPRGMVVI 138 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 + D M AANALLK+LEEP +L IL+S AS +L+TIRSRC I F L ++ Sbjct: 139 EAADSMPEAAANALLKTLEEPGHGLL-ILLSAASERLLTTIRSRCQQILFARLEGADMQT 197 Query: 197 AL 198 L Sbjct: 198 VL 199 >gi|159900437|ref|YP_001546684.1| DNA polymerase III subunits gamma and tau [Herpetosiphon aurantiacus ATCC 23779] gi|159893476|gb|ABX06556.1| DNA polymerase III, subunits gamma and tau [Herpetosiphon aurantiacus ATCC 23779] Length = 575 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 18/219 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G I + L + R+ HA LF G +G+GK + + V N + S +R C Sbjct: 18 LVGQSHIVQALRNAIAANRIGHAYLFTGPRGVGKTSAARILSKAV--NCEQSDPRLRPCG 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 CS + +A D + + + + +VD+ R I + +V Sbjct: 76 E--CS-TCRAIAEGRAVDVIEMDAASH---------TSVDDAREIIEKVQFRPTQFRKKV 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPP +FIL + + +TI SRC FN + N Sbjct: 124 YVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSRCQRFVFNRHTIAN 183 Query: 194 LYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 LE + + + V AA GS+ A+ IL Sbjct: 184 TIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSIL 222 >gi|78043743|ref|YP_358923.1| putative DNA polymerase III, delta prime subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77995858|gb|ABB14757.1| putative DNA polymerase III, delta prime subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 267 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%) Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DFL+L+ G + V+E+ + +L T G +VI+++ VD M +AANA Sbjct: 61 DFLWLA-----PDGSSFKIWQVNEVLIPKVYL--TPQKGSRKVIVLEEVDKMTLDAANAF 113 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 LK+LEEPP V ++LI+ +L TI SRC +K ++ YK Sbjct: 114 LKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSAEDFTGQYKG 160 >gi|293194283|ref|ZP_06609969.1| DNA polymerase III, delta' subunit [Actinomyces odontolyticus F0309] gi|292819730|gb|EFF78744.1| DNA polymerase III, delta' subunit [Actinomyces odontolyticus F0309] Length = 397 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 48/74 (64%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 ++I V+ R + + + G WRVI+++ D + + ANALLK++EEPP+ +++L + Sbjct: 103 SIINVETARSLVLQAQSSPSQGLWRVIVVEDADRLGESGANALLKAIEEPPEHTVWLLCA 162 Query: 168 HASPTILSTIRSRC 181 + +++TIRSRC Sbjct: 163 PSPEDMIATIRSRC 176 >gi|298491751|ref|YP_003721928.1| DNA polymerase III subunit delta' ['Nostoc azollae' 0708] gi|298233669|gb|ADI64805.1| DNA polymerase III, delta prime subunit ['Nostoc azollae' 0708] Length = 317 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 28/289 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKA-------TLGFRYAGHVLQNPDF 64 ++L G + L+Q R+ A LF G G+G++ L F + Q Sbjct: 3 EKLIGQKQAIGLLTQAVKQNRVAPAYLFVGTDGVGRSLAAKCFIELLFSSSIQPHQIATL 62 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +R N P +V+ + + K +VI +++IR I FLS Sbjct: 63 QNL-IRQGN-HPALFWVEPTYQYQGQRLTAAEAAEKGVKRKAPSVIRLEQIREITQFLSR 120 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++++ + M +AANALLK+LEEP Q L ILI+ + ++L T+ SRC I Sbjct: 121 PPLEATRNIVVLEQAERMAESAANALLKTLEEPGQATL-ILIAPSPESVLPTLVSRCQKI 179 Query: 185 KF---------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 F L++ ++ L+ +++ + IAAY + L + K Sbjct: 180 PFYRLDTASVAQILTQTGNWEILQHPEVLSLAAGSPGSAIAAYQQLQTINNELLQEVRKT 239 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICK 284 +SY + AL+ +++ EL + Q D+L ++ ++I K Sbjct: 240 PTSYRN---------ALELAKKVDKELDIEAQLWLIDYLQQWYWQQIYK 279 >gi|163938039|ref|YP_001642923.1| DNA polymerase III subunit delta' [Bacillus weihenstephanensis KBAB4] gi|229053879|ref|ZP_04195314.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH603] gi|229165021|ref|ZP_04292817.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH621] gi|163860236|gb|ABY41295.1| DNA polymerase III, delta prime subunit [Bacillus weihenstephanensis KBAB4] gi|228618406|gb|EEK75435.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH621] gi|228721420|gb|EEL72940.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH603] Length = 327 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 75/196 (38%), Gaps = 48/196 (24%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN-------- 73 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTNCRRIDSG 76 Query: 74 ---------PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 PD S +K+ H L + KTG L Sbjct: 77 NYPNLHIVKPDGLS--IKKQQIHDLQEEF-------SKTG-------------------L 108 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 AN +V +I+ D M NAAN LLK LEEP IL++ S IL+TI SRC + Sbjct: 109 EANK---KVYIIEHADRMTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVV 165 Query: 185 KFNSLSENNLYKALEQ 200 F L +L K LE+ Sbjct: 166 TFRPLPTESLIKRLEE 181 >gi|154250711|ref|YP_001411535.1| DNA polymerase III subunits gamma and tau [Parvibaculum lavamentivorans DS-1] gi|154154661|gb|ABS61878.1| DNA polymerase III, subunits gamma and tau [Parvibaculum lavamentivorans DS-1] Length = 623 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 12/201 (5%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + L G E + + LS + + R+ HA + G +G+GK T R L Sbjct: 45 VLARKYRPTVFEDLVGQEAMVRTLSNAFETDRVAHAFMLTGVRGVGKTTTA-RILARALN 103 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P +K D P + M +H + + S ++ + +D+IR Sbjct: 104 YEKPGATKG-------DGSGPTI-HMDGLGVHCEAIMESRHVDVMEMDAASRTGIDDIRE 155 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + ++V +ID V +++ A N LLK+LEEPP V FI + + T+ Sbjct: 156 IIDSVRYLPVSARYKVYIIDEVHMLSKQAFNGLLKTLEEPPAHVKFIFATTEIRKVPVTV 215 Query: 178 RSRCLSIKFNSLSENNLYKAL 198 SRC LS L L Sbjct: 216 LSRCQRFDLRRLSVEELTGLL 236 >gi|91793404|ref|YP_563055.1| DNA polymerase III, delta prime subunit [Shewanella denitrificans OS217] gi|91715406|gb|ABE55332.1| DNA polymerase III, delta prime subunit [Shewanella denitrificans OS217] Length = 321 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 2/94 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA G RV +I + MN +ANALLK+LEEP ++ +L + Sbjct: 92 IKVDQIRSLCSSLTSTAQQGGKRVAIIYQSERMNTASANALLKTLEEPGKETFLLLQTDR 151 Query: 170 SPTILSTIRSRC--LSIKFNSLSENNLYKALEQL 201 + +L+T++SRC LSI S +E N + +QL Sbjct: 152 TAALLATVKSRCQTLSITPPSNAEVNAWLKGQQL 185 >gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] Length = 537 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 6 RKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAI----- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMAS--HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N +PC+ +S + D + + + N + +D+IR +R Sbjct: 61 ---NCLDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRR---------IDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F ++ +N+ L L D + + A G++ A+ IL Sbjct: 169 QRYEFKMINSKDISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSIL 219 >gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis HTCC2601] gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. HTCC2601] Length = 588 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 28/246 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + +GR+ A + G +G GK T A G Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 60 QNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC K + D + + + N TG V +IR Sbjct: 70 IGPDGEGGPTT----EPCGECEHCKAIMEGRHVDVIEMDAASN--TG-------VGDIRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176 Query: 178 RSRCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 SRC + + L EQ +I D V AA GS A +L Sbjct: 177 LSRCQRFDLRRIEPEVMISLLRRIATAEQAEIT--DDALALVTRAAEGSARDATSLL--- 231 Query: 232 CDKIIS 237 D+ IS Sbjct: 232 -DQAIS 236 >gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] Length = 368 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 31/229 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ ALLF G +G+GK T R + D Sbjct: 9 RKYRPQEFDTVVGQSHITDTLEHAIEESQLAQALLFCGPRGVGKTTCA-RILARKINEKD 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S + F Y Y L+ + +VD+IR + + Sbjct: 68 ---------------------GSVSEDGFAYNIYELDAASNN-----SVDDIRELIDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 FAPQVGKYKVYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + +N+L E+ I D + A G++ A+ I Sbjct: 162 YDFKRIVIEDIQNHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIF 210 >gi|330723510|gb|AEC45880.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis MCLD] Length = 712 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 24/199 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + I + L + ++ HA LF G +G GK ++ F + Sbjct: 10 RKYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFATTLNCSHK 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 D P + C + F D + + + N G VDEIR I Sbjct: 70 TDLF-IPCQKCQDSVNNSF----------DIIEMDGASN--NG-------VDEIRELINN 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +L N+ Y ++ +ID V ++ +A NA LK+LEEPP+ V+FIL + + I TI SR Sbjct: 110 VNNLPTNSQY-KIYIIDEVHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSR 168 Query: 181 CLSIKFNSLSENNLYKALE 199 F +SE + LE Sbjct: 169 VQRFNFRKISEKEIVSRLE 187 >gi|229496959|ref|ZP_04390664.1| putative DNA polymerase III, delta prime subunit [Porphyromonas endodontalis ATCC 35406] gi|229316061|gb|EEN81989.1| putative DNA polymerase III, delta prime subunit [Porphyromonas endodontalis ATCC 35406] Length = 385 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 40/249 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + G+E +++ L + +G + H +LF+ E G+ L + ++ +P + C Sbjct: 6 IIGYESLKEELRRISATGHIPHNILFDIEDGMPGVGLALAWIQYLNCSDPHHGDS----C 61 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKT------GKWRTVITV-----DEIRRIRYF 121 P + Q++ +H + + + +T +WR + D +RY Sbjct: 62 GVCPHCKMLSQLSYPDVHYIFPVVNATDVETPSDNFLSQWREMFAAEGAYFDHETWLRYL 121 Query: 122 --------------------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 LS+ ++ G +R+++I D MN AAN LLK +EEPP K Sbjct: 122 NAGKQQPVIYSKDAIALENKLSIASSEGGYRMVIIYEPDRMNEAAANKLLKLMEEPPDKT 181 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYG 219 + + + A+ +L TI SR + L+++ L L Q +RD ++ A + G Sbjct: 182 IIVSVCFATEQLLETILSRMQRFELLPLTQDELKMGLRQFYPQA--QERDLLRAALRSDG 239 Query: 220 SVARAIKIL 228 + RA +IL Sbjct: 240 ILLRARQIL 248 >gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] Length = 856 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DE+R +R + Sbjct: 68 PTDHPCNECS------ACKSILSGQSMDVLEIDAASN---------RGIDEVRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWD-SKRDFVKIAAYGSVARAIKIL 228 F ++ +++ + L + + G D + + + A G + A+ IL Sbjct: 173 YTFRRITSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSIL 221 >gi|323342270|ref|ZP_08082502.1| DNA-directed DNA polymerase III subunit delta' [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463382|gb|EFY08576.1| DNA-directed DNA polymerase III subunit delta' [Erysipelothrix rhusiopathiae ATCC 19414] Length = 316 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 17/171 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA L G+ G YA ++ + + + C CS +++ S Sbjct: 21 NRVSHAYLIVGDYGT------LDYAKYMAMSMMCGEQDIGACGS--CST-CQRIDSENHA 71 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DF LS GK +++ + I YF + T +V +I+ VD A N+L Sbjct: 72 DFRILS-------GKEQSIKKSEIISLKEYFSQSSIETAGHQVYIIEDVDNATVEAMNSL 124 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY-KALEQ 200 LK LEEP ++ IL + +L TIRSRCL++ S++ L+ KA EQ Sbjct: 125 LKFLEEPEGDIVAILTTRNENRVLETIRSRCLTVHLESMNHQVLFDKAHEQ 175 >gi|213579916|ref|ZP_03361742.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 170 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|154508480|ref|ZP_02044122.1| hypothetical protein ACTODO_00980 [Actinomyces odontolyticus ATCC 17982] gi|153798114|gb|EDN80534.1| hypothetical protein ACTODO_00980 [Actinomyces odontolyticus ATCC 17982] Length = 397 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 48/74 (64%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 ++I V+ R + + + G WRVI+++ D + + ANALLK++EEPP+ +++L + Sbjct: 103 SIINVETARSLVLQAQSSPSQGLWRVIVVEDADRLGESGANALLKAIEEPPEHTVWLLCA 162 Query: 168 HASPTILSTIRSRC 181 + +++TIRSRC Sbjct: 163 PSPEDMIATIRSRC 176 >gi|328955030|ref|YP_004372363.1| DNA polymerase III, delta prime subunit [Coriobacterium glomerans PW2] gi|328455354|gb|AEB06548.1| DNA polymerase III, delta prime subunit [Coriobacterium glomerans PW2] Length = 380 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 23/214 (10%) Query: 11 NQRLFGHED----IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 Q L H + + FL + +GR A LF G G G A +L + Sbjct: 10 GQALLAHLEAQPRVRDFLERALEAGRTSSAYLFLGATGSGAGDAARALAQALLCDE---- 65 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 R C C V+ + H +++ L P++ +IT +IR + ++L Sbjct: 66 ---RGCGR--CDTCVR--VARGTHPDVHV---LEPESAMG-YIIT--QIRELLGDVALAP 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +V +I D + N+ANALLK+LEEPP V FILI ++ TIL TI SRC + F Sbjct: 113 IRAHRKVYIITRADLLRPNSANALLKTLEEPPDGVTFILIGASTDTILPTIVSRCQCVLF 172 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 ++ + + + G R + A GS Sbjct: 173 RTVPPTEVAAIVS--RATGLPEGRCRIAAAIAGS 204 >gi|296271483|ref|YP_003654115.1| DNA polymerase III subunits gamma and tau [Thermobispora bispora DSM 43833] gi|296094270|gb|ADG90222.1| DNA polymerase III, subunits gamma and tau [Thermobispora bispora DSM 43833] Length = 729 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 21/202 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L Q +GR+HHA LF G +G GK T R L + Sbjct: 7 RKYRPGTFAEVKGQEHVTEPLRQALRTGRIHHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCS---PFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 K P PDPC V + H D + + + + VD+ R +R Sbjct: 63 CEKGP----TPDPCGECESCVALAPTGPGHIDVIEIDAASH---------GGVDDARDLR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID + R NALLK +EEPP + F+ + ++ TI+S Sbjct: 110 ERAFFAPVSARFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 R F + L + +E++ Sbjct: 170 RTHHYPFRLMPPATLRQLIEEI 191 >gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A] gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A] Length = 726 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 24/185 (12%) Query: 6 FDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 ++P+Y + L G + I LS S R+ HA LF G +G GK + +A + Sbjct: 4 YEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSI 63 Query: 59 LQNPDFSKAP-VRMC-NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 N S AP + C N + C K + D + + + N TG VD IR Sbjct: 64 --NCLASDAPSISPCGNCEACQTINKGSS----LDVIEIDAASN--TG-------VDNIR 108 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I +++ ++D ++ A NALLK LEEPP+ V+FIL + +L T Sbjct: 109 EIIEQAKFAPMQLRYKIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPT 168 Query: 177 IRSRC 181 I SRC Sbjct: 169 IISRC 173 >gi|228956473|ref|ZP_04118270.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803163|gb|EEM49984.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 327 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSERNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKLYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F SL +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRSLPTESLIRRLQ 180 >gi|269128738|ref|YP_003302108.1| DNA polymerase III subunit delta' [Thermomonospora curvata DSM 43183] gi|268313696|gb|ACZ00071.1| DNA polymerase III, delta prime subunit [Thermomonospora curvata DSM 43183] Length = 390 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +V E R + S G WR+++ + D AANALLK++EEPP + +++L + + Sbjct: 100 SVKEARELVLRASSAPTGGRWRIVLFEDADRSTEAAANALLKAIEEPPPRTVWLLCAPSP 159 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +++TIRSRC + + + +AL Q Sbjct: 160 EDLVTTIRSRCRVVTLRTPPAAAIAEALIQ 189 >gi|152973879|ref|YP_001373396.1| DNA polymerase III subunit delta' [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022631|gb|ABS20401.1| DNA polymerase III, delta prime subunit [Bacillus cytotoxicus NVH 391-98] Length = 327 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 16/179 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L ++ +PC + Sbjct: 17 KMLINSIAKERISHAYLLEGAKGTGKFATAIQMAKSFL--------CMQRSGVEPCHTCI 68 Query: 82 K-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + H L+L + P I +I ++ S T ++ +I+ D Sbjct: 69 NCRRIDSGNHPNLHL---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKIYIIEHAD 121 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F SL +L K L+ Sbjct: 122 RMTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRSLPTASLIKRLQ 180 >gi|294630605|ref|ZP_06709165.1| DNA polymerase III, delta' subunit [Streptomyces sp. e14] gi|292833938|gb|EFF92287.1| DNA polymerase III, delta' subunit [Streptomyces sp. e14] Length = 401 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMASHA 88 +M HA LF G G G T R LQ +PD + C D C Sbjct: 42 KMTHAWLFTGPPGAG-VTQTARAFAAALQCVSPDRALGGAPGCGFCDGC----------- 89 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L +++ T I +++R +R + AN G W+VI+++ + +N +A Sbjct: 90 -HTALVGTHADVSTVAAVGTQILAEDMRDTVRKSFTSPAN-GRWQVILVEDAERLNEKSA 147 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 NA+LK++EEP + +++L + + +L TIRSRC + ++ S Sbjct: 148 NAVLKAVEEPAPRTVWLLCAPSIEDVLPTIRSRCRHLNLSTPS 190 >gi|257057604|ref|YP_003135436.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis DSM 43017] gi|256587476|gb|ACU98609.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis DSM 43017] Length = 690 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 79/199 (39%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L SGR++HA LF G +G GK T R L Sbjct: 7 RKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGK-TSSARIMARSLNC-- 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V PDPC + +A G VD+ R +R Sbjct: 64 -----VEGPTPDPCGKCGPCEALAPEGPGSVDVTELDAASHGG-------VDDARELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ ++FI + +L+TIRSR Sbjct: 112 AFYAPAESRYRVFIIDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ 200 F + + + LE+ Sbjct: 172 HHYPFRLIPPKAMRELLER 190 >gi|297587206|ref|ZP_06945851.1| probable DNA polymerase III delta subunit [Finegoldia magna ATCC 53516] gi|297575187|gb|EFH93906.1| probable DNA polymerase III delta subunit [Finegoldia magna ATCC 53516] Length = 272 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 49/86 (56%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + IT+D+IR I F+S +V++I D M A+NALLK+LEEP V FIL+ Sbjct: 68 KNSITIDKIRDIAKFVSTKPFESNNKVVLIKQADLMRTEASNALLKNLEEPKPFVYFILL 127 Query: 167 SHASPTILSTIRSRCLSIKFNSLSEN 192 + +L TI SRC I + S EN Sbjct: 128 TDNKNKLLKTIISRCQVINYLSEREN 153 >gi|311741023|ref|ZP_07714848.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium pseudogenitalium ATCC 33035] gi|311303825|gb|EFQ79903.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium pseudogenitalium ATCC 33035] Length = 370 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G G++ +A L D + C + C ++ H Sbjct: 9 MSHSWLFTGPPGSGRSLAAIDFAA-ALMCTDAEEPGCGRC--EACRAVLETKQ----HTD 61 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L L ++P+ +I VD +R + + WRV++ + D +N N ANALLK Sbjct: 62 LVL---VDPQ----EVIIPVDTVREVIGRAASLPTVAPWRVVIFNNADRLNNNGANALLK 114 Query: 153 SLEEPPQKVLFILI--SHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ++EEPP + + I+ S A T+RSRC + S S ++ L Sbjct: 115 TVEEPPARTVIIMCAPSDAPEDFSQTLRSRCRHLYIPSPSVESITAQL 162 >gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] gi|158447261|gb|EDP24256.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] Length = 540 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 29/249 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P R+ G I + L +G + HA LF G +G GK + +A Sbjct: 9 REFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFA-------- 60 Query: 64 FSKAPVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 V NP +PC+ + L D ++ + + +D+IR ++ Sbjct: 61 ---RAVNCLNPIDGNPCNEC--ENCKMILEDKALEVVEMDAASNRR-----IDDIRELKE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID + NALLK LEEPP+ ++FIL + + TI SR Sbjct: 111 KVIYPPQIVKYKVYIIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISR 170 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + N+ L L + + + + + G++ A+ +L D+++ Sbjct: 171 CQRFEFKRINNSDIVENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLL----DQVV 226 Query: 237 SSYIDLIHI 245 ++ + I I Sbjct: 227 ATGKEKITI 235 >gi|118465813|ref|YP_879801.1| DNA polymerase III subunit delta' [Mycobacterium avium 104] gi|118167100|gb|ABK67997.1| DNA polymerase III subunit delta [Mycobacterium avium 104] Length = 388 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 18/200 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A + D R HA Sbjct: 23 AGTMTHAWLITGPPGSGRSVAALCFAAALQCTADGEPGCGRC---------------HAC 67 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 L +++ + I VD +R I + TG W++++I+ D + AANA Sbjct: 68 TTTLAGTHADVRRVVPEGLSIGVDGMRAIVQIAARRPATGNWQIVVIEDADRLTEGAANA 127 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + + T+RSRC + + S + + L + + Sbjct: 128 LLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALVTPSTEAIARVLVDSDGLTPE 187 Query: 208 SKRDFVKIAAYGSVARAIKI 227 + D+ + G V RA ++ Sbjct: 188 TA-DWAASVSGGHVGRARRL 206 >gi|304390521|ref|ZP_07372474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326277|gb|EFL93522.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 798 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G E + K L +GR++HA LF G +G GK T A + Q Sbjct: 7 RRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + G VD+ R +R Sbjct: 67 P--TATPCGTC--DSC----RDLATGGSGSLDVIEIDAASHGG-------VDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ L + L + D V A GSV ++ IL Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL 222 >gi|238783768|ref|ZP_04627787.1| DNA polymerase III subunit delta' [Yersinia bercovieri ATCC 43970] gi|238715319|gb|EEQ07312.1| DNA polymerase III subunit delta' [Yersinia bercovieri ATCC 43970] Length = 335 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 20 AGRGHHALLLHALPGNGEEALIYGLSRWLMCQQRQGEKSCGECHS------CRLMLAGNH 73 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L + GK + I V+ +R+ L A G +V+ + + + AANA Sbjct: 74 PDW----YVLAAEKGK--SSIGVELVRQQIEKLYSHAQQGGAKVVWLPHAEQLTDAAANA 127 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 128 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 159 >gi|298373790|ref|ZP_06983779.1| DNA polymerase III, delta prime subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274842|gb|EFI16394.1| DNA polymerase III, delta prime subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 382 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 31/247 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP--DFSKAPVR 70 + G +DI+ L + + R+ HA +F G G+G + YA ++ +NP D S Sbjct: 6 IVGQDDIKSRLIRGAAARRVAHAQMFHGISGVGCLPMALAYAQYINCENPLPDDSCGQCP 65 Query: 71 MC-------NPD------------------PCSPFVKQMASHALHD-FLYLSYSLNPKTG 104 C +PD C F+ Q + L + +L L Sbjct: 66 SCRKYAGLVHPDLHFVFPIINKKSSGDDGSVCDDFLPQFRNEVLKNPYLSLQDWQEALQE 125 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + +I E I L+L A +++++I + M+ AN +LK +EEP + LFI Sbjct: 126 DKKPIIYTREGDEIIRKLNLKAFEAQYKIMIIWCAEQMHEACANKVLKVIEEPQGQTLFI 185 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 LIS IL TIRSR I F + +L + L+ + ++ +F A GS+ + Sbjct: 186 LISDNIENILPTIRSRVQQIFFPPIDVEHLRRELKSKGL--YNEASEFYIKNAKGSLNQL 243 Query: 225 IKILHYD 231 K ++ D Sbjct: 244 YKNINND 250 >gi|298345779|ref|YP_003718466.1| hypothetical protein HMPREF0573_10653 [Mobiluncus curtisii ATCC 43063] gi|298235840|gb|ADI66972.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 789 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 33/256 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G E + K L +GR++HA LF G +G GK T A + Q Sbjct: 7 RRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + G VD+ R +R Sbjct: 67 P--TATPCGTC--DSC----RDLATGGSGSLDVIEIDAASHGG-------VDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---------- 227 F ++ L + L + D V A GSV ++ I Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSILDQLIAGEAE 231 Query: 228 --LHYDCDKIISSYID 241 LHYD + Y D Sbjct: 232 PKLHYDRAVSLLGYTD 247 >gi|47458908|ref|YP_015770.1| DNA polymerase III subunits gamma and tau [Mycoplasma mobile 163K] gi|47458236|gb|AAT27559.1| DNA polymerase III subunit gamma and tau [Mycoplasma mobile 163K] Length = 720 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 38/265 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L ++ HA LF G +G GK ++ +A + + Sbjct: 8 RKYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAAALNCEHE 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K + C+ V+ + ++ D + + + N VDEIR +R + Sbjct: 68 IQKEKI-------CNLCVENLDNNL--DIIEIDAASNN---------GVDEIRELREKVK 109 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + + ++V +ID + ++A NALLK+LEEPP+ +FIL + I T+ SR Sbjct: 110 YSPSQYKYKVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQR 169 Query: 184 IKFNSLS----ENNLYKAL--EQLKI----------MGWDSKRDFVKIAAYGSVARAIKI 227 F ++ E L + L E ++I M RD + IA S+ I Sbjct: 170 FNFKRITLPILEKQLQEVLTKENIRINKNALTLIAKMAEGGLRDALSIADQISIFSNNNI 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYAL 252 + D++ S L+ I Q Y L Sbjct: 230 TEKEVDEVFS----LVSIEDQIYFL 250 >gi|89101174|ref|ZP_01174006.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911] gi|89084109|gb|EAR63278.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911] Length = 335 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 15/164 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA LFEG +G GK G A + + P+ P C C + H Sbjct: 27 RLAHAYLFEGMRGTGKKDAGLLLAKSLFCERPEGGYIPCEDCTN--CRRI-----NSGNH 79 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 ++L L P I +I+ ++ S T ++ MI+ D M NAAN+L Sbjct: 80 PDIHL---LEPDG----LSIKKHQIQALQEEFSKTGVESKRKLYMINHADKMTVNAANSL 132 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 LK LEEP + IL++ +L TI SRC +I F L+ N+ Sbjct: 133 LKFLEEPNSDSVAILMTEQGQRMLPTILSRCQTISFIPLTPQNM 176 >gi|318040595|ref|ZP_07972551.1| DNA polymerase III subunit delta' [Synechococcus sp. CB0101] Length = 327 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 17/186 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC- 72 L G L R+ A LF G G+G++ R+ V+ P S + R Sbjct: 8 LVGQHQATTLLLAALERQRLAPAYLFCGPDGVGRSIAARRFLEGVIAGPAGSASVRRRLQ 67 Query: 73 ---NPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PD P Q+ + +S P+ + ++++R + FL Sbjct: 68 EGNHPDLLWVEPTYSEKGQLVPASKAAEAGVSRKAPPQ-------LRLEQVRAVSQFLGR 120 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I+ V+ M AANALLK+LEE P L IL++ A +LSTIRSRC +I Sbjct: 121 RPVEANRCLVVIEAVEAMAEGAANALLKTLEE-PGDGLLILLTAAPDRLLSTIRSRCQAI 179 Query: 185 KFNSLS 190 F L+ Sbjct: 180 PFARLA 185 >gi|327540242|gb|EGF26831.1| DNA polymerase III, tau/gamma subunit [Rhodopirellula baltica WH47] Length = 376 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 11/180 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK--APVRM 71 L GH+ + L+ GR+ +LLF G G+GK + +L ++ AP Sbjct: 33 LIGHDALITGLTAAIRQGRLGGSLLFVGPNGVGKTSAAILLTQTLLCERSTARDMAPCGE 92 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF---LSLTANT 128 C P Q+ DF+ + + +I + R F + L Sbjct: 93 C------PSCVQVRVGTHPDFIQVRKPDDKTLIPLELLIGPVDARLQEGFCHDVHLRPMQ 146 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +V ++ D +N AN LLK+LEEPP L ILI + L TIRSRC ++F + Sbjct: 147 AQRKVAILHDADFLNEEGANCLLKTLEEPPANALIILIGSSEQRQLPTIRSRCQVLRFQT 206 >gi|302381707|ref|YP_003817530.1| DNA polymerase III subunits gamma/tau [Brevundimonas subvibrioides ATCC 15264] gi|302192335|gb|ADK99906.1| DNA polymerase III, subunits gamma and tau [Brevundimonas subvibrioides ATCC 15264] Length = 612 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 35/239 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + D Sbjct: 67 RKYRPRTFEDLIGQEAMVRTLTNAFATGRIAHAFMLTGVRGVGKTTTARLLARALNNETD 126 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--------EI 115 P ++ +H HD ++ G+ V+ +D +I Sbjct: 127 VIDRPS------------LELTAHGRHDAAIMA-------GQHMDVMELDAASHTGVNDI 167 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + ++V ++D V ++ A NALLK+LEEPP FI + + Sbjct: 168 RDILESVRYAPVEARYKVYVLDEVHMLSNQAFNALLKTLEEPPPHAKFIFATTEIRKVPV 227 Query: 176 TIRSRCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 TI SRC + L + L E +K+ D + AA GSV + +L Sbjct: 228 TILSRCQRFDLRRVEPEILVEHLGRIATKEGMKV--EDDALALIARAAEGSVRDGLSLL 284 >gi|304392342|ref|ZP_07374283.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130] gi|303295446|gb|EFL89805.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130] Length = 672 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 31/316 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L + +GR+ A + G +G+GK T A + D Sbjct: 33 RKYRPSSFADLIGQEPMVRTLRNAFSTGRIAQAYMLTGVRGVGKTTTARILARALNYESD 92 Query: 64 FSKAP-VRMCNPD-PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P + + P C+ ++ +H D + + + + G R +I +RY Sbjct: 93 TQKQPTLDLSTPGIHCADIME--GNHV--DVIEMDAASHTGIGDIREIIAA-----VRY- 142 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A N LLK+LEEPP+ V FI + + TI SRC Sbjct: 143 ---KPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITILSRC 199 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + L ++ I D + A+ GSV A+ +L D+ I+ Sbjct: 200 QRFDLRRIEAGEMVDHLGKIAKLESIAVEDEALAMIARASEGSVRDALSVL----DQAIA 255 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 H + A + + + D L D+ D L EF +K +A A + Q + Sbjct: 256 ------HASAESDATVRAEGVRDMLGLADRARVID-LFEFCMKGDI-AAALAEMKAQHDV 307 Query: 298 ADQIAQIYFSLVKRVH 313 A + L VH Sbjct: 308 GADPATVLTDLADFVH 323 >gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] Length = 577 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 24/237 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G E + + L + + R+ HA + G +G+GK T A G Sbjct: 11 VLARKYRPATFADLIGQEAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPVR----MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD P +C +PC + +A D + + + +TG V +I Sbjct: 71 IGPDGKGGPTTEPCGVC--EPC----RAIAEGRHVDVMEMDAA--SRTG-------VGDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + + A + +++ +ID V ++ A NALLK+LEEPP V FI + + Sbjct: 116 REVIDSVHYRAASARYKIYIIDEVHMLSNAAFNALLKTLEEPPAHVKFIFATTEIRKVPV 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 T+ SRC + + L ++ + G D + + AA GSV A+ ++ Sbjct: 176 TVLSRCQRFDLKRIEPEVMLTHLARIAALEGASLAPDALALITRAAEGSVRDAMSLM 232 >gi|271970385|ref|YP_003344581.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513560|gb|ACZ91838.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 393 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 + E R++ + G WRV++ + D M A+NALLK++EEPP K +++L + + Sbjct: 97 IKETRQLILRAAGAPTLGRWRVVLFEGADRMPERASNALLKAIEEPPPKTVWLLCTPSPA 156 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 ++ TIRSRC + + + AL + D +FV A G +ARA ++ Sbjct: 157 DLVITIRSRCRVVTLVTPPTAAVAHALVTRDNIPPDMA-EFVARATQGHLARARRL 211 >gi|57866013|ref|YP_187718.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus epidermidis RP62A] gi|251809792|ref|ZP_04824265.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282875414|ref|ZP_06284286.1| putative DNA polymerase III, delta prime subunit [Staphylococcus epidermidis SK135] gi|293366126|ref|ZP_06612813.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|57636671|gb|AAW53459.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus epidermidis RP62A] gi|251806660|gb|EES59317.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295771|gb|EFA88293.1| putative DNA polymerase III, delta prime subunit [Staphylococcus epidermidis SK135] gi|291319720|gb|EFE60079.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329733038|gb|EGG69377.1| hypothetical protein SEVCU028_1265 [Staphylococcus epidermidis VCU028] gi|329737899|gb|EGG74127.1| hypothetical protein SEVCU045_1426 [Staphylococcus epidermidis VCU045] Length = 308 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + + +L N N + C Sbjct: 2 DEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCN-----------NSNQCE 50 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 V +H DF Y+S N I ++I ++ + ++ G ++V +I+ Sbjct: 51 LKVDTF-NHP--DFSYVSSDEN--------TIKKEQIEKLVHHMNQLPIEGQYKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + N++LK LEEPP + IL+S IL TI SRC + F + + + L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKRQFIERL 159 Query: 199 EQLKI 203 ++ I Sbjct: 160 VEMSI 164 >gi|315654368|ref|ZP_07907276.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333] gi|315491403|gb|EFU81020.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333] Length = 789 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G E + K L +GR++HA LF G +G GK T A + +Q Sbjct: 7 RRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCVQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + G VD+ R +R Sbjct: 67 P--TATPCGTC--DSC----RDLATGGSGSLDVIEIDAASHGG-------VDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ L + L + D V A GSV ++ IL Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL 222 >gi|302380881|ref|ZP_07269343.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna ACS-171-V-Col3] gi|302311259|gb|EFK93278.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna ACS-171-V-Col3] Length = 537 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 19/185 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 6 RKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAI----- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMAS--HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N +PC+ ++S + D + + + N + +D+IR +R Sbjct: 61 ---NCLDLQNGNPCNKCENCLSSLEESTLDIVEMDAASNRR---------IDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKF 186 +F Sbjct: 169 QRYEF 173 >gi|224129822|ref|XP_002328811.1| predicted protein [Populus trichocarpa] gi|222839109|gb|EEE77460.1| predicted protein [Populus trichocarpa] Length = 1197 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 33/210 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + PV+ L G + + L+ GR+ LF+G +GIGK + +A + Sbjct: 477 LSQKYKPVFFSELIGQNIVVQSLTNAISRGRIAPVYLFQGPRGIGKTSAARIFASALNCT 536 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE-----IR 116 P C CS + +GK R + VD I Sbjct: 537 SAEEIKPCGYCRE--CSDSI---------------------SGKTRDLWEVDGTDKKGID 573 Query: 117 RIRYFLSLTA-----NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 ++RY L + + +++V +ID + A LK LEEPPQ+V+FI ++ Sbjct: 574 KVRYLLKKISHRPPLGSSHYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPD 633 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + T++SRC FN + + ++ L ++ Sbjct: 634 NVPRTVQSRCQKYLFNKIKDGDIVARLRKI 663 >gi|161614573|ref|YP_001588538.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363937|gb|ABX67705.1| hypothetical protein SPAB_02322 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 334 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALLGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|257869778|ref|ZP_05649431.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803942|gb|EEV32764.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 579 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 23/220 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L ++ HA LF G +G GK + +A + P+ N Sbjct: 25 VVGQKAITQTLKNAIEQNQISHAYLFTGPRGTGKTSAAKIFA-KAINCPN-------QVN 76 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ + + + D + + + N V+EIR IR + + Sbjct: 77 GEPCNECEMCRSITAGTQEDVIEIDAASNNG---------VEEIRFIRDRANYAPTQAEY 127 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D V ++ A NALLK+LEEP + V+FIL + I +TI SR F ++ Sbjct: 128 KVYIVDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINT 187 Query: 192 ----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 ++L L+ +I + + AA G + A+ I Sbjct: 188 QDIVDHLKTVLDGSQIAYEEEALQVIARAAEGGMRDALSI 227 >gi|32476634|ref|NP_869628.1| DNA polymerase III, tau/gamma subunit [Rhodopirellula baltica SH 1] gi|32447180|emb|CAD77006.1| DNA polymerase III, tau/gamma subunit [Rhodopirellula baltica SH 1] Length = 376 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 11/180 (6%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK--APVRM 71 L GH+ + L+ GR+ +LLF G G+GK + +L ++ AP Sbjct: 33 LIGHDALITGLTAAIRQGRLGGSLLFVGPNGVGKTSAAILLTQTLLCERSTARDMAPCGE 92 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF---LSLTANT 128 C P Q+ DF+ + + +I + R F + L Sbjct: 93 C------PSCVQVRVGTHPDFIQVRKPDDKTLIPLELLIGPVDARLQEGFCHDVHLRPMQ 146 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +V ++ D +N AN LLK+LEEPP L ILI + L TIRSRC ++F + Sbjct: 147 AQRKVAILHDADFLNEEGANCLLKTLEEPPANALIILIGSSEQRQLPTIRSRCQVLRFQT 206 >gi|319793760|ref|YP_004155400.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS] gi|315596223|gb|ADU37289.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS] Length = 338 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G +V+++ P + MN ANALLK+LEEP V F+L S A Sbjct: 111 IRVEAMRDAVGFAQRTSARGRGKVVLVYPAERMNTITANALLKTLEEPVGDVRFVLASEA 170 Query: 170 SPTILSTIRSRCLSIKF 186 + +L TIRSRCL Sbjct: 171 AWQLLPTIRSRCLGFTL 187 >gi|307153823|ref|YP_003889207.1| DNA polymerase III subunit delta' [Cyanothece sp. PCC 7822] gi|306984051|gb|ADN15932.1| DNA polymerase III, delta prime subunit [Cyanothece sp. PCC 7822] Length = 321 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +++IR I FL+ V++I+ M AANALLK+LEEP + L ILI+ + Sbjct: 108 IRIEQIREITRFLARPPLEAPRTVVVIEEAHTMTEAAANALLKTLEEPGRSTL-ILIAPS 166 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 S +L T+ SRC I F+ LS+ + LK G++ ++ ++ + I Sbjct: 167 SDLLLPTLVSRCQRIPFSRLSDGEMTTV---LKNNGYEIILNYPELLGIAQGSPGEAIAA 223 Query: 230 YDCDKIISSYID--LIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFL 274 Y+ + + L H+P+ AL+ + +A EL +Q Q D+L Sbjct: 224 YEQLQSFPEALKNRLNHLPKTPIDALELAKILAQELDTQTQLWLVDYL 271 >gi|262184140|ref|ZP_06043561.1| DNA polymerase III subunits gamma and tau [Corynebacterium aurimucosum ATCC 700975] Length = 854 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G E + LS +GR++HA LF G +G GK T R L Q P + P Sbjct: 1 MVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGK-TSSARIMARSLNCEQGP--TSTPCG 57 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C +A + G V+++R +R Sbjct: 58 VC--DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAYYAPAESR 104 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +R+ +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR F L+ Sbjct: 105 YRIFIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLT 164 Query: 191 ENNLYKALEQ 200 + LE+ Sbjct: 165 PPAMKGLLER 174 >gi|296274259|ref|YP_003656890.1| DNA polymerase III subunits gamma and tau [Arcobacter nitrofigilis DSM 7299] gi|296098433|gb|ADG94383.1| DNA polymerase III, subunits gamma and tau [Arcobacter nitrofigilis DSM 7299] Length = 607 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 19/221 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + L G + + LS S R+ HA LF G +G GK + A +L + + P + Sbjct: 22 EDLVGQGTVSQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLCSNGPTSKPCEV 81 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C + C V + L D + + + N +D+I+ + ++ + Sbjct: 82 C--ENC---VSANTNRHL-DIIEMDAASNR---------GIDDIKDLIEHTKYKPSSARF 126 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V + A NALLK+LEEPP V FIL + + +TI SR +F +S+ Sbjct: 127 KVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRFKKISQ 186 Query: 192 ----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 N+L L + +I + V + GS+ + +L Sbjct: 187 KDVMNHLTHILNEEQIEFETEALEIVSRSGQGSLRDTLTLL 227 >gi|196047855|ref|ZP_03115033.1| DNA polymerase III subunit delta' [Bacillus cereus 03BB108] gi|196021111|gb|EDX59840.1| DNA polymerase III subunit delta' [Bacillus cereus 03BB108] Length = 326 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L+ ++ HA +FEG +GIGK YA +L S P C + Sbjct: 15 KVLTNAIKKEKIAHAYIFEGSKGIGKFQTSLLYAKSILCLDQTSIEPCNNCK----NCNR 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +H D +++ P T I ++I ++ S ++ ++ +I+ + Sbjct: 71 CDTGNHP--DIVHI----KPDG----TTIKKEQIELLQREFSFSSFESGKKLYIIESAEK 120 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 M +AAN+LLK LEEP + +L++ S +L+TI SRC +KF +S + + +AL + Sbjct: 121 MTASAANSLLKFLEEPTGDSVAMLLTQHSSAMLTTIISRCQLLKFTPVSTDIVEQALAEQ 180 Query: 202 KIMGWDSK 209 I G + K Sbjct: 181 FIFGEEGK 188 >gi|256826255|ref|YP_003150215.1| DNA polymerase III subunit gamma/tau [Kytococcus sedentarius DSM 20547] gi|256689648|gb|ACV07450.1| DNA polymerase III, gamma/tau subunit [Kytococcus sedentarius DSM 20547] Length = 394 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%) Query: 14 LFGHEDIEKFLSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E++ + L+Q R + HA LF G G G++T +A +L PD R C Sbjct: 9 LVGQEELAEGLAQAVADPRRLTHAYLFTGPPGSGRSTAARAFAAALL-CPDGGCGSCREC 67 Query: 73 NP--DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D V+ + + L I+V R + + + G Sbjct: 68 RSALDGTHADVEVVNTEGLS-------------------ISVRNARDLAMAAAHHPSVGA 108 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 WR+I+I+ D + AA+ALLK+LEEP + +++L + + ++ TIRSR Sbjct: 109 WRIIVIEDADRLTEQAADALLKALEEPSPRTIWMLCAPSPQDVIVTIRSR 158 >gi|282863635|ref|ZP_06272693.1| DNA polymerase III, delta prime subunit [Streptomyces sp. ACTE] gi|282561336|gb|EFB66880.1| DNA polymerase III, delta prime subunit [Streptomyces sp. ACTE] Length = 401 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 23/196 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHALH 90 M HA LF G G G++T +A + +PD + C D C + +HA Sbjct: 43 MTHAWLFTGPPGSGRSTAARAFAAALQCTSPDRALGGAPGCGFCDGC--HTALIGTHA-- 98 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + L I V E R + L+ G W+VI+++ D + A N L Sbjct: 99 DVEVIRTEL--------LSIGVKETRELVRRAQLSPAVGRWQVIVLEDADRLTEGAGNVL 150 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK++EEP + +++L + + +L TIRSRC + + + + + L +R Sbjct: 151 LKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLTLTTPPVDAVAEVL---------VRR 201 Query: 211 DFVKIAAYGSVARAIK 226 D V S ARA + Sbjct: 202 DGVDPDRAASAARATQ 217 >gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC 700122] gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC 700122] Length = 862 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 20/198 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G IE+ + S R+ HA LF G +G GK T+ A +L Sbjct: 7 RKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLCEKG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRR-IRY 120 + AP C L ++ +P + V+ +R I Sbjct: 67 PTPAPDGEC-----------------EQCLAIAEGTHPDVNEMDAASRTGVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 110 RVQFAPVRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 C F+ L+ + L Sbjct: 170 CQRFDFHRLANEEIIARL 187 >gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] Length = 607 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 101/240 (42%), Gaps = 31/240 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P L GHE + + L + + R+ HA + G +G+GK T Y Sbjct: 16 VLARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARALNY 75 Query: 55 AGHVLQNPDFSKAPV--RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 + P PV R C + + + H +Y + + +TG V Sbjct: 76 ETETIDRPTVDM-PVEGRHC----------RAIAESRHPDVYEMDAAS-RTG-------V 116 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 +IR + + G ++V +ID V ++ NA NALLK+LEEPP V FI + Sbjct: 117 GDIRELIEGVRYAPIEGRYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRK 176 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL--KIMGWDSKR--DFVKIAAYGSVARAIKIL 228 + T+ SRC +L L + K SK D + AA GSV A+ +L Sbjct: 177 VPVTVLSRCQRFDLRRFDITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLL 236 >gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis KC583] gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella bacilliformis KC583] Length = 634 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 23/235 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 9 VLARKYRPQNFSDLIGQETMVRTLTNAFEAGRIAQAWILTGIRGVGKTTTA-RILARALN 67 Query: 60 -QNPDFSKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + D +K P + N + C+ ++ H D + + + TG +D+IR Sbjct: 68 YETKDINK-PTTVFNTLGEHCTQIIE--GRHI--DVIEMDAA--SHTG-------IDDIR 113 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ A N LLK+LEEPP V FI + + T Sbjct: 114 EIIEQIRYCPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPIT 173 Query: 177 IRSRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 I SRC + + +L+K + K+ + + AA GSV A+ I Sbjct: 174 ILSRCQRFDLRRVESSALVAHLHKIAQHEKVEVQEQALSIIARAAEGSVRDALSI 228 >gi|312137857|ref|YP_004005193.1| DNA polymerase iii gamma subunit [Rhodococcus equi 103S] gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] Length = 723 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LS +GR++HA LF G +G GK T R L Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGK-TSSARILARSLN--- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--------EI 115 C P S + AS +L P VI +D + Sbjct: 61 --------CVQGPTSTPCGECAS---------CIALGPGGAGNLDVIELDAASHGGVEDT 103 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +RV ++D + NALLK +EEPP+ ++FI + +L Sbjct: 104 RELRDRAFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TIRSR F L+ + + LE++ Sbjct: 164 TIRSRTHHYPFRLLAPSTMRGLLEKI 189 >gi|168053850|ref|XP_001779347.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669263|gb|EDQ55854.1| predicted protein [Physcomitrella patens subsp. patens] Length = 356 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 19/201 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQ 60 +++ + P + G K LS G++ LF G +G GK + +A G Sbjct: 9 LNQKYRPKNFNEIVGQNVAVKSLSTAIVKGKVAPVYLFMGPRGTGKTSAARVFAAGLNCL 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD ++ P +C C M + D + + N R ++ Sbjct: 69 SPDRARRPCGICRE--CG----TMKLNRSADVRQIDAASNIDAASMRAMMG--------- 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S T + Y +V +++ D ++ + NA LK LEEPP+ V+FILI+ + I ST SR Sbjct: 114 --SFTPHAQY-KVFIVEGCDLLSSDIWNAFLKVLEEPPRNVVFILITTDAERIPSTAFSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F+ L + ++ LE L Sbjct: 171 CQKFHFSKLKDADIVSRLELL 191 >gi|239815833|ref|YP_002944743.1| DNA-directed DNA polymerase [Variovorax paradoxus S110] gi|239802410|gb|ACS19477.1| DNA-directed DNA polymerase [Variovorax paradoxus S110] Length = 340 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G +V+++ P + MN ANALLK+LEEP V F+L S A Sbjct: 112 IRVEAMRDAVGFAQRTSARGRGKVVLVYPAERMNTITANALLKTLEEPVGDVRFVLASEA 171 Query: 170 SPTILSTIRSRCLSIKF 186 + +L TIRSRCL Sbjct: 172 AWQLLPTIRSRCLGFTL 188 >gi|327398754|ref|YP_004339623.1| DNA polymerase III subunits gamma and tau [Hippea maritima DSM 10411] gi|327181383|gb|AEA33564.1| DNA polymerase III, subunits gamma and tau [Hippea maritima DSM 10411] Length = 417 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/362 (22%), Positives = 147/362 (40%), Gaps = 45/362 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G L + ++HHA+L G G GK +L A + Sbjct: 4 VLARKYRPSKLSEVIGQPVATTILKNAIETEKLHHAILLAGPMGTGKTSLARIIAKSLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + C K +A D + + + N K R + I ++Y Sbjct: 64 QNGPTTEPCGEC--EAC----KAIALGKDVDVIEIDGASNRKIENARNI-----IESVKY 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID + A NA+LK++EEPP+ V FI + A I TI SR Sbjct: 113 ----PPLKRRFKVYIIDEIHMFTLEAFNAMLKTIEEPPEYVKFIFATTAIEKIPETILSR 168 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVA-------RAIK--- 226 C + N + +N + K L+ Q I + + + A+ GS+ R I Sbjct: 169 CQILTLNRIPKNEIEKKLKYIASQENIKIDNEAIELISYASTGSLRVAEGFLDRCIAFKP 228 Query: 227 -----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 ++ +++SY++ I + + AL ++ + + + S Q + Sbjct: 229 TDTITKEDVSVVVGIPTKDVVNSYVEFIIQNKAKEALDIIKNL-NTISSNLQTFTKQVIE 287 Query: 276 EFILKEICKSAKAAALS---GQLEEADQIAQIYFSLVKRVH-AFSMYNLDRRQMIFHLLS 331 I K++ K+ K A ++ L++ Q + +L+ H A + +L+ +I LS Sbjct: 288 NIIEKDLSKTQKTALINIYYNALKDIKQKIEPTDALIVATHKAIATNDLESIDIIIEKLS 347 Query: 332 KA 333 K Sbjct: 348 KT 349 >gi|229131039|ref|ZP_04259952.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST196] gi|228652376|gb|EEL08300.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST196] Length = 308 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 74/189 (39%), Gaps = 48/189 (25%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN-----------------P 74 R+ HA L EG +G GK + A L + P +C P Sbjct: 8 RISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTNCRRIDSGNYPNLHIVKP 67 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 D S +K+ H L + KTG L AN +V Sbjct: 68 DGLS--IKKQQIHDLQEEF-------SKTG-------------------LEANK---KVY 96 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I+ D M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L Sbjct: 97 IIEHADRMTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESL 156 Query: 195 YKALEQLKI 203 K LE+ I Sbjct: 157 IKRLEEEGI 165 >gi|292571767|gb|ADE29682.1| DNA polymerase III delta subunit [Rickettsia prowazekii Rp22] Length = 263 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%) Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 SY+ N K I++++IR+++ FL+ T+ ++V +I D MN +AANA LK LE Sbjct: 62 SYTSNAKN------ISIEQIRKLQDFLNKTSAISGYKVAVIYSADLMNLHAANACLKILE 115 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 + P+ LI+ + +I+STIRSRC + S Sbjct: 116 DTPKNSYIFLITSRAASIISTIRSRCFKVNIRS 148 >gi|288959353|ref|YP_003449694.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510] gi|288911661|dbj|BAI73150.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510] Length = 636 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 18/185 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ SGR+ A + G +G+GK T R L Sbjct: 27 VLARKYRPKTFDELIGQDALVRTLTNAIQSGRIAQAFMLTGVRGVGKTTTA-RIIARALN 85 Query: 61 --NPDFSKAP-VRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 PD + P V C D C + +A D + + + + TG VD+IR Sbjct: 86 CTGPDGNGGPTVSPCGVCDNC----RAIAEDRHVDVMEMDAASH--TG-------VDDIR 132 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + + +++ +ID V ++++A NALLK+LEEPP V F+ + + T Sbjct: 133 EIIDGVRYSPVSARYKLYIIDEVHMLSKSAFNALLKTLEEPPSHVKFVFATTEIRKVPVT 192 Query: 177 IRSRC 181 + SRC Sbjct: 193 VLSRC 197 >gi|213864740|ref|ZP_03386859.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 219 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 19/164 (11%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAP--VRMCNPDPC 77 EK + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 12 EKLVESYQ-AGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ---- 66 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 ---LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIA 115 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 116 DAALLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|259908790|ref|YP_002649146.1| DNA polymerase III, delta\' subunit [Erwinia pyrifoliae Ep1/96] gi|224964412|emb|CAX55921.1| DNA polymerase III, delta\' subunit [Erwinia pyrifoliae Ep1/96] Length = 334 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HHALL + G+G L + ++ + P + + C +A + D Sbjct: 22 RGHHALLIQALPGMGDDALIWGIGRWLM-----CRQPEGLKSCGKCHACALMLAGNH-PD 75 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + Y L + GK + +D +R + L A G +V+ + + AANALL Sbjct: 76 W----YQLEAEKGK--NALGIDAVRGVTDKLYHYAQQGGAKVVWLPDAQQLTEAAANALL 129 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCL 182 K+LEEPP+ F+L S +L T+RSRCL Sbjct: 130 KTLEEPPKNTWFLLSSREPSRLLPTLRSRCL 160 >gi|167553641|ref|ZP_02347389.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321958|gb|EDZ09797.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 334 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDVVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|42520657|ref|NP_966572.1| DNA polymerase III, subunit, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410397|gb|AAS14506.1| DNA polymerase III, subunit, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 273 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 32/153 (20%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G++GIGKATL ++ +L + ++ ++ Sbjct: 24 LICGKKGIGKATLAKSFSNWLL-----------------------------IKNYNEVAL 54 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 L+ G I ++++R ++ FL L+ ++ +ID ++ M NA NA+LK LEEP Sbjct: 55 DLHIVEG---DTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEP 111 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P+ +ISH I +TIR RC + L+ Sbjct: 112 PKNSKIFIISHKPYDIQTTIRCRCFQLNLLPLT 144 >gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801] gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8801] Length = 648 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 13/168 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I L+ + R+ A LF G +G GK T R L FS C Sbjct: 19 LVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGK-TSSARILAKSLNCLAFSDPTATPCG 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 C + + + D + + + N TG VD IR I ++V Sbjct: 78 K--CE-VCRAITRGSALDVIEIDAASN--TG-------VDNIREIIERAQFAPVQCRYKV 125 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 126 YVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRC 173 >gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus PCC 6301] gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942] gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus PCC 6301] gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942] Length = 652 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 19/176 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 L G E I + LSQ R+ A LF G +G GK T R L Q+ + +P Sbjct: 18 LVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGK-TSSARILAKSLNCQQSTVPTASPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C + +A D + + + N TG VD IR + Sbjct: 77 ECE------ACRAIARGNALDVIEIDAASN--TG-------VDNIRELIERAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC F Sbjct: 122 FKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDF 177 >gi|254480715|ref|ZP_05093962.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma proteobacterium HTCC2148] gi|214039298|gb|EEB79958.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma proteobacterium HTCC2148] Length = 591 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 15/198 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGEMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++A D L + + K V++ R + Sbjct: 65 EQGVSSHPCGECG------SCLEIAEGRSVDLLEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKAL 198 CL ++ + L Sbjct: 170 CLQFNLKNMPPEQIVGHL 187 >gi|309790307|ref|ZP_07684874.1| DNA polymerase III, subunits gamma and tau [Oscillochloris trichoides DG6] gi|308227641|gb|EFO81302.1| DNA polymerase III, subunits gamma and tau [Oscillochloris trichoides DG6] Length = 568 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 20/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G E + + L R+ HA LF G +G+GK T+ A V +P+ + P C Sbjct: 18 LIGQEHVVQTLRNAIIEERVAHAYLFTGPRGVGKTTMARLLAKAVNCTDPNPAARPCGQC 77 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P +A D + + + + +V++ R I + + Sbjct: 78 ------PACVAIAEGRAVDVIEMDAASH---------TSVEDAREIIERVQFRPAEMRSK 122 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN----S 188 V +ID ++ A NALLK+LEEPP +FIL + + +TI SRC F + Sbjct: 123 VYIIDETHMLSTAAFNALLKTLEEPPDHAIFILATTEVHKVPATILSRCQRFTFTRHGIA 182 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + N+L + + + + AA GS+ A+ +L Sbjct: 183 ATSNHLRQIASAEGLSLEAGVPEAIARAATGSMRDALGVLE 223 >gi|205353064|ref|YP_002226865.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272845|emb|CAR37772.1| DNA polymerase III, delta' subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628143|gb|EGE34486.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 334 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +GR HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLMPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|120612064|ref|YP_971742.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] gi|120590528|gb|ABM33968.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] Length = 333 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 44/74 (59%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEP V F+L S A Sbjct: 109 IRVEAMRDAVQFAQRTSARGRGKAVLVYPAEQMNTVTANALLKTLEEPVGDVRFVLASEA 168 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 169 AHQLLPTIRSRCLG 182 >gi|307069636|ref|YP_003878113.1| putative DNA polymerase III subunits gamma and tau [Candidatus Zinderia insecticola CARI] gi|306482896|gb|ADM89767.1| putative DNA polymerase III, subunits gamma and tau [Candidatus Zinderia insecticola CARI] Length = 362 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 31/230 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ + P++ + + G + I F + H+ LF G GIGK +L R + Sbjct: 1 MLVLKYRPMFFKEILGQKHIISFFKNCIKKKKFHNNFLFIGNSGIGKTSLS-RILAKSMN 59 Query: 61 NPDFS-KAPVRMC------NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 + + P C N D C D+L ++ + N K + + Sbjct: 60 CKNLNINEPCNKCKSCISINKDKCI------------DYLEINAASNRGINKIKNIF--- 104 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +Y + N +++ MID + + A +++LK +EEPP+ V FI + I Sbjct: 105 -----KYINYIPINK--YKIYMIDEIHMLTNYAFDSILKIIEEPPKYVKFIFATTKPKKI 157 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVA 222 TI SRC + ++K + + LKI +++ +K+ A S+ Sbjct: 158 PKTILSRCFIFNLKLIKNKEIFKNISKILKIENIKYEKNAIKLIAKNSLG 207 >gi|227506004|ref|ZP_03936053.1| DNA polymerase III subunits gamma and tau [Corynebacterium striatum ATCC 6940] gi|227197286|gb|EEI77334.1| DNA polymerase III subunits gamma and tau [Corynebacterium striatum ATCC 6940] Length = 858 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G E + LS +GR++HA LF G +G GK T R L Q P + P Sbjct: 1 MVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGK-TSSARIMARSLNCEQGP--TSTPCG 57 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C +A + G V+++R +R Sbjct: 58 VC--DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAYYAPAESR 104 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +R+ +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR F L+ Sbjct: 105 YRIFIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLT 164 Query: 191 ENNLYKALEQ 200 + LE+ Sbjct: 165 PPAMKGLLER 174 >gi|326316633|ref|YP_004234305.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373469|gb|ADX45738.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 333 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 44/74 (59%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+ +R F T+ G + +++ P + MN ANALLK+LEEP V F+L S A Sbjct: 109 IRVEAMRDAVQFAQRTSARGRGKAVLVYPAEQMNTVTANALLKTLEEPVGDVRFVLASEA 168 Query: 170 SPTILSTIRSRCLS 183 + +L TIRSRCL Sbjct: 169 AHQLLPTIRSRCLG 182 >gi|300922625|ref|ZP_07138723.1| DNA polymerase III, delta' subunit [Escherichia coli MS 182-1] gi|301328530|ref|ZP_07221594.1| DNA polymerase III, delta' subunit [Escherichia coli MS 78-1] gi|300421033|gb|EFK04344.1| DNA polymerase III, delta' subunit [Escherichia coli MS 182-1] gi|300845076|gb|EFK72836.1| DNA polymerase III, delta' subunit [Escherichia coli MS 78-1] Length = 334 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P K+ R C Sbjct: 10 DFEKLVA-IYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK ++ +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLAPEKGK--NMLGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|256374358|ref|YP_003098018.1| DNA polymerase III subunits gamma/tau [Actinosynnema mirum DSM 43827] gi|255918661|gb|ACU34172.1| DNA polymerase III, subunits gamma and tau [Actinosynnema mirum DSM 43827] Length = 713 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L +GR++HA LF G +G GK T R L + Sbjct: 11 RKYRPATFAEVIGQEHVTDPLRIALGAGRVNHAYLFSGPRGCGK-TSSARILARSL---N 66 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PDPC +A + + G VD+ R +R Sbjct: 67 CAKGP----TPDPCGECNSCVGLAPNGPGSVDVVELDAASHGG-------VDDTRELREK 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 116 AFYAPAEAKYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLPTIRSRT 175 Query: 182 LSIKFNSLSENNLYKALEQ 200 F + ++ LE+ Sbjct: 176 HHYPFRLIPPVSMRALLER 194 >gi|166368134|ref|YP_001660407.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa NIES-843] gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa NIES-843] Length = 654 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 17/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G I LS S R+ A LF G +G GK + A + N S P Sbjct: 18 LVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL--NCLSSDHP----T 71 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P PC + +A+ + D + + + N TG VD IR I + Sbjct: 72 PIPCGKCSVCQAIANGSALDVIEIDAASN--TG-------VDNIREIIERSQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRC 172 >gi|116669281|ref|YP_830214.1| DNA polymerase III subunit delta' [Arthrobacter sp. FB24] gi|116609390|gb|ABK02114.1| DNA polymerase III, delta prime subunit [Arthrobacter sp. FB24] Length = 380 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 15/174 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L Q + HA LF G G G++ +A + N D R C Sbjct: 7 LQGQPAVVAQLRQAAQGEGLTHAWLFTGPPGSGRSNAAKAFAAAL--NCDQEDVTRRGCG 64 Query: 74 PDPCSPFVKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C+ + + +H+ F+ + IT+DE R + ++G WR Sbjct: 65 E--CAACLTILGETHSDVAFVRTE----------KVTITIDEARELVSTAGNRPSSGRWR 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +I+++ D M N LLK++EEP + +++L + + +L TIRSRC + Sbjct: 113 IIVVEDADRMAERTTNVLLKAIEEPTPRTVWMLCAPSPADVLVTIRSRCRPVAL 166 >gi|253681012|ref|ZP_04861815.1| DNA polymerase III subunit delta' [Clostridium botulinum D str. 1873] gi|253562861|gb|EES92307.1| DNA polymerase III subunit delta' [Clostridium botulinum D str. 1873] Length = 314 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GH+ I+K ++ SG+ HA L GE GIGK+ + A +L K R Sbjct: 4 ENIIGHDLIKKEINNSINSGKFSHAHLIVGEDGIGKSLMAREIALKIL-----GKVEKR- 57 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D++ + + + K + I VD IR I ++ Sbjct: 58 -------------------DYVDI---IQWRIEKNKQSIGVDNIRDIIKEVNKKPYEEDK 95 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +VI+I + M A NA LK++EEPP+ V IL++ +L TI+SRC Sbjct: 96 KVIIIYQGERMTIEAQNAFLKTIEEPPKGVFIILLTSNLQFMLETIKSRC 145 >gi|159035922|ref|YP_001535175.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola CNS-205] gi|157914757|gb|ABV96184.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola CNS-205] Length = 834 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P+PC + +A+ + G VD+ R +R Sbjct: 63 CEHGP----TPEPCGTCGSCRALATDGAGSIDVIEIDAASHGG-------VDDARELREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 112 AFFAPAQSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 172 HHYPFRLIPPKVLRPYLEQL 191 >gi|148552984|ref|YP_001260566.1| DNA polymerase III subunits gamma and tau [Sphingomonas wittichii RW1] gi|148498174|gb|ABQ66428.1| DNA polymerase III, subunits gamma and tau [Sphingomonas wittichii RW1] Length = 582 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+ HA L G +G+GK + R L Sbjct: 10 VLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTA-RLIAKALN 68 Query: 61 --NPDFSKAPVRMCNPDPCS---PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD P DPC P V +A D + + + + ++D++ Sbjct: 69 CIGPDGQGGP----TIDPCGVCEPCVA-IAEGRHIDVVEMDAASH---------TSIDDV 114 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + + +++ +ID V ++++A N LLK+LEEPP V F+ + + Sbjct: 115 REIIEAVRYASVSARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPI 174 Query: 176 TIRSRCLSIKFNSLSENNL 194 T+ SRC ++ + L Sbjct: 175 TVLSRCQRFDLRRITADKL 193 >gi|219666131|ref|YP_002456566.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219536391|gb|ACL18130.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 282 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 16/183 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR+ H LLF G G + G A + AP C P K++ S Sbjct: 14 EGRLAHLLLFHGGSGPERRKAGLEIARRI-NCTSGQDAPCGHC------PSCKKILSGNH 66 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + + I +++I + + G ++V +++ D + AANA Sbjct: 67 PDVEVVKPA--------KASIGIEQILDWQERVYRKHYEGNYKVFILEEADKLTIPAANA 118 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK +EEPP++ L +L + + +L TI+SR ++ F E K+LE+ + W+++ Sbjct: 119 LLKVIEEPPERTLIVLSAQNAEVLLPTIQSRAQAVYFPFRGEEEWLKSLEE-SLDPWEAR 177 Query: 210 RDF 212 F Sbjct: 178 EAF 180 >gi|291558238|emb|CBL35355.1| DNA polymerase III, subunits gamma and tau [Eubacterium siraeum V10Sc8a] Length = 743 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 FD V +Q E I L +G HA LF G +G GK T A V Sbjct: 14 FDEVISQ-----EHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAV-----NC 63 Query: 66 KAPVRMCNPDPCSPFVKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PV + +PC A + D + + + N VD++R +R + Sbjct: 64 LSPV---DGNPCGECESCKAIAAGCPDIIEMDAASN---------NGVDDVRALRDEVMY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID V ++ A NALLK++EEPP V+FIL + + +TI SRC Sbjct: 112 APTVCRYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQF 171 Query: 185 KFNSL 189 +F+ + Sbjct: 172 RFSRI 176 >gi|269129109|ref|YP_003302479.1| DNA polymerase III subunits gamma and tau [Thermomonospora curvata DSM 43183] gi|268314067|gb|ACZ00442.1| DNA polymerase III, subunits gamma and tau [Thermomonospora curvata DSM 43183] Length = 715 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 35/209 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + + L Q +GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPATFAELKGQEHVAEPLQQALRNGRINHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD---------- 113 + P PDPC +A L P VI +D Sbjct: 63 CEQGP----TPDPCGKCESCVA-------------LGPGGSGHIDVIEIDAASHGGIDDA 105 Query: 114 -EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 ++R +F ++A ++V +ID + NALLK +EEPP + F+ + Sbjct: 106 RDLRERAFFAPVSAR---FKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDK 162 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ TIRSR F L L + +E++ Sbjct: 163 VIGTIRSRTHHYPFRLLPPGTLRELVEEV 191 >gi|27469217|ref|NP_765854.1| DNA polymerase III delta' subunit [Staphylococcus epidermidis ATCC 12228] gi|27316766|gb|AAO05941.1|AE016751_236 DNA polymerase III delta' subunit [Staphylococcus epidermidis ATCC 12228] gi|329723945|gb|EGG60470.1| hypothetical protein SEVCU144_1107 [Staphylococcus epidermidis VCU144] Length = 308 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + + +L N N + C Sbjct: 2 DEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCN-----------NSNQCE 50 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 V +H DF Y+S N I ++I ++ + ++ G ++V +I+ Sbjct: 51 LKVDTF-NHP--DFSYVSSDEN--------TIKKEQIEQLVHHMNQLPIEGQYKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + N++LK LEEPP + IL+S IL TI SRC + F + + + L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKRQFIERL 159 Query: 199 EQLKI 203 ++ I Sbjct: 160 VEMSI 164 >gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter alkaliphilus HTCC2654] gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2654] Length = 576 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G E + + L + + R+ A + G +GIGK T A G Sbjct: 9 VLARKYRPETFADLIGQEAMVRTLRNAFAADRIAQAFVMTGIRGIGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC +A + +TG V +IR I Sbjct: 69 IGPDGNGGP----TVEPCGECEHCVAIAEGRHVDVMEMDAASRTG-------VGDIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 177 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 RC + ++ L ++ K D + AA GS A +L Sbjct: 178 RCQRFDLRRIEPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLL 230 >gi|297182623|gb|ADI18781.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 547 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 30/286 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G + + + L S R+ A + GE+G GK + + + +F Sbjct: 5 YRPKNFKELIGQDVMVETLVNSIKSNRIAQAFMLTGERGTGKTSTARIISKSLTCTGNFL 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + V+ + C +++ + D + +TG VD++R+I Sbjct: 65 EG-VKCETGEIC--HCEEITNDKHLDVTECDAA--SRTG-------VDDVRQIIDAARYK 112 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 T +++ +ID ++R+A NALLK+LEEPP ++ FI + I TI SRC + Sbjct: 113 PTTAKYKIYIIDECHMLSRSAWNALLKTLEEPPDQLKFIFCTTEPKKIPLTIASRCQTFH 172 Query: 186 FNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 + S L+ L+++ + DS + A+ GSV AI +L +++ ++ Sbjct: 173 LHRASIKVLFDHLKKISRIENGKISDSAIKLIAKASTGSVRDAISLLDR---ALVNQHVS 229 Query: 242 LIHIPRQEYALQKMQQIAD-----ELL----SQDQKIAFDFLIEFI 278 + E ++KM +AD ELL DQK + + L + I Sbjct: 230 EKEV--DEATVRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMI 273 >gi|228983287|ref|ZP_04143501.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776401|gb|EEM24753.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 327 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|311897064|dbj|BAJ29472.1| putative DNA polymerase III subunit gamma/tau [Kitasatospora setae KM-6054] Length = 738 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 7 RRYRPETFAEVIGQEHVTAPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P PDPC + +A+ + G VD+ R +R Sbjct: 63 CEQGP----TPDPCGECQSCRDLATGGPGSIDVIEIDAASHGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 AFFAPVHSRYKIFILDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L Q+ +I DS V A GSV ++ ++ Sbjct: 172 HHYPFRLVPPGTLRDYLAQVCGREEIQVEDSVFPLVVRAGAGSVRDSMSVM 222 >gi|240173039|ref|ZP_04751697.1| DNA polymerase III subunit delta' [Mycobacterium kansasii ATCC 12478] Length = 194 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 26/174 (14%) Query: 31 GRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDP----CSPFVKQM 84 G M HA L G G G+ A L F A +P+ + DP C M Sbjct: 38 GTMTHAWLITGPPGSGRSVAALCFAAALQCTADPE---------DGDPGCGRCRACTTTM 88 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 A + L+ I VDE+R I S TG+ ++++I+ D + Sbjct: 89 AGTHADVRRVIPEGLS---------IGVDEMRAIVQIASRKPTTGHRQIVLIEDADRLTE 139 Query: 145 NAANALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYK 196 AANALLK +EEPP +F+L + + I T+RSRC + + S + + Sbjct: 140 GAANALLKVVEEPPASTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTAAIAQ 193 >gi|291520251|emb|CBK75472.1| DNA polymerase III, subunits gamma and tau [Butyrivibrio fibrisolvens 16/4] Length = 533 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 23/241 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R F P + + G + I L + R+ HA LF G +G GK T+ +L Sbjct: 8 RKFRPQTFEDVKGQDHIVTTLQNQIKTDRIGHAYLFTGTRGTGKTTIA-----KILARTI 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + PV C PC A A + + G VD IR+I ++ Sbjct: 63 NCENPVNGC---PCMECQTCKAITAGNSMNVIEMDAASNNG-------VDSIRQIVEEVA 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 113 YPPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVVFILATTEVHKIPITILSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ +S + + L++L + + ++ AA GS+ + +L D+ I+ Y Sbjct: 173 YDFHRISIDTIAARLQELMDKEGVQVEEKAIRYIAKAADGSMRDGLSLL----DQCIAFY 228 Query: 240 I 240 I Sbjct: 229 I 229 >gi|229194422|ref|ZP_04321226.1| DNA polymerase III, delta prime subunit [Bacillus cereus m1293] gi|228589012|gb|EEK47026.1| DNA polymerase III, delta prime subunit [Bacillus cereus m1293] Length = 327 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|15604047|ref|NP_220562.1| DNA polymerase III subunit delta' [Rickettsia prowazekii str. Madrid E] gi|3860738|emb|CAA14639.1| DNA POLYMERASE III, DELTA SUBUNIT (holB) [Rickettsia prowazekii] Length = 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%) Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 SY+ N K I++++IR+++ FL+ T+ ++V +I D MN +AANA LK LE Sbjct: 68 SYTSNAKN------ISIEQIRKLQDFLNKTSAISGYKVAVIYSADLMNLHAANACLKILE 121 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 + P+ LI+ + +I+STIRSRC + S Sbjct: 122 DTPKNSYIFLITSRAASIISTIRSRCFKVNIRS 154 >gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM 14684] gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM 14684] Length = 724 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + L ++HHA LF G +G GK ++ A + N + + C Sbjct: 19 VVGQTHVVRTLRNAVERDKVHHAYLFVGSRGTGKTSMAKILAACL--NCERGGPTIEPCG 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 CS V + +L D + + + N +VD+IR +R ++ +G ++V Sbjct: 77 V--CSSCVSIANATSL-DVIEMDAASNN---------SVDDIRELRDKVAYAPVSGRYKV 124 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++D ++ A NA LK+LEEPP +F+L + + +L T+ RC F Sbjct: 125 YILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCHRFDFT 178 >gi|255324204|ref|ZP_05365326.1| DNA polymerase III subunit delta [Corynebacterium tuberculostearicum SK141] gi|255298720|gb|EET78015.1| DNA polymerase III subunit delta [Corynebacterium tuberculostearicum SK141] Length = 423 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G G++ +A L D + C + C ++ H Sbjct: 62 MSHSWLFTGPPGSGRSLAAIDFAA-ALMCTDAEEPGCGRC--EACRAVLETKQ----HTD 114 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L L ++P+ +I VD +R + + WRV++ + D +N N ANALLK Sbjct: 115 LVL---VDPQ----EVIIPVDTVREVIGRAASLPTVAPWRVVIFNNADRLNNNGANALLK 167 Query: 153 SLEEPPQKVLFILI--SHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ++EEPP + + I+ S A T+RSRC + S S ++ L Sbjct: 168 TVEEPPARTVIIMCAPSDAPEDFSQTLRSRCRHLYIPSPSVESITAQL 215 >gi|319399641|gb|EFV87895.1| DNA polymerase III delta' subunit [Staphylococcus epidermidis FRI909] Length = 308 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + + +L N N + C Sbjct: 2 DEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCN-----------NSNQCE 50 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 V +H DF Y+S N I ++I ++ + ++ G ++V +I+ Sbjct: 51 LKVDTF-NHP--DFSYVSSDEN--------TIKKEQIEQLVHHMNQLPIEGQYKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + N++LK LEEPP + IL+S IL TI SRC + F + + + L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKRQFIERL 159 Query: 199 EQLKI 203 ++ I Sbjct: 160 VEMSI 164 >gi|310767312|gb|ADP12262.1| DNA polymerase III, delta' subunit [Erwinia sp. Ejp617] Length = 334 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HHALL + G+G L + ++ + P + + C +A + D Sbjct: 22 RGHHALLIQALPGMGDDALIWGIGRWLM-----CRQPEGLKSCGKCHACALMLAGNH-PD 75 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + Y L + GK + +D +R + L A G +V+ + + AANALL Sbjct: 76 W----YQLEAEKGK--NALGIDAVRGVTDKLYHYAQQGGAKVVWLPDAQQLTEAAANALL 129 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCL 182 K+LEEPP+ F+L S +L T+RSRCL Sbjct: 130 KTLEEPPKNTWFLLSSREPSRLLPTLRSRCL 160 >gi|299132608|ref|ZP_07025803.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2] gi|298592745|gb|EFI52945.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2] Length = 616 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 15/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 35 VLARKYRPSNFNDLIGQEAMVRTVSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 93 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + PD S KAP + P P M S + D L + + + TG +D++R+ Sbjct: 94 YELPDGSVKAPT-ITMPTPGVHCQAIMESRHI-DVLEMDAASH--TG-------IDDVRQ 142 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ Sbjct: 143 ITDGVRYAPSSARYKVYIIDEVHMLSEKAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTV 202 Query: 178 RSRC 181 SRC Sbjct: 203 LSRC 206 >gi|256370602|ref|YP_003108427.1| putative DNA polymerase III subunit delta' [Candidatus Sulcia muelleri SMDSEM] gi|256009394|gb|ACU52754.1| putative DNA polymerase III, delta prime subunit [Candidatus Sulcia muelleri SMDSEM] Length = 360 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 20/257 (7%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD----------FSKAPVRMCNPDPCSPF 80 ++ HA+LF G +G G ++ +L D F + P P Sbjct: 12 NKIPHAILFLGPEGCGNLITAINFSKKILCKEDDHSCLLKFKNFQHPDLHFIFPLPKKIM 71 Query: 81 VKQMASHALHDFLYLS-YSLNPKTGKW----RTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + + + FL Y KW I ++I + ++ + +++I+ Sbjct: 72 INKNIFNKWSIFLKKQPYGCFSDWIKWIKSNECFIYKEQIENLLKKITYKSYESDYKIII 131 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 + + + ++N LLK LE PP+K +F+L+ IL TI SR I+FN S + Sbjct: 132 LWMPEKLTLYSSNKLLKILEFPPKKTIFLLVGENENNILPTILSRIFLIRFNKFSFKEIK 191 Query: 196 KALE-QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQK 254 K LE +LKI SK+ + + A G++ +A+K+++ + + I+ I R + ++K Sbjct: 192 KFLEKKLKIDTIQSKQ--IALKAEGNLNKALKLVNNFQENYLE--INFISWIRNLFFIKK 247 Query: 255 MQQIADELLSQDQKIAF 271 ++++ +KI F Sbjct: 248 NPTFLEKIILFSKKINF 264 >gi|253576901|ref|ZP_04854226.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251843768|gb|EES71791.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G E ++ L + HA +F G G G+ + + + Sbjct: 4 QEIIGQETAKQLLQSSLRRREISHAYIFSGPPGSGQMEMAMAFVQALF---------CTR 54 Query: 72 CNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C ++ + H H L+ ++ P I +++IR ++ S + +G Sbjct: 55 GGDDACGECLECRKVLHGNHPDLF---TIKPDG----ATIKIEQIRDLQRIFSYRSESGN 107 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + +ID + M AAN+LLK LEEPP + IL+S +L TI+SR + F+ ++ Sbjct: 108 PKAYIIDEAEKMTVQAANSLLKFLEEPPSPAVAILLSDNGRALLPTIQSRAQWVPFSPVN 167 Query: 191 ENNLYKAL 198 + + L Sbjct: 168 PETMLQIL 175 >gi|254468265|ref|ZP_05081671.1| DNA polymerase III, delta subunit, putative [beta proteobacterium KB13] gi|207087075|gb|EDZ64358.1| DNA polymerase III, delta subunit, putative [beta proteobacterium KB13] Length = 314 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VIT+D+IR + F+ L + + + ++I I + +AANALLK+LEEPP FIL++ Sbjct: 85 VITIDQIRELSSFIELASTSEHDKKIIFIKNTHYLTSSAANALLKNLEEPPNNTFFILLT 144 Query: 168 HASPTILSTIRSR 180 IL TIRSR Sbjct: 145 SNLHKILPTIRSR 157 >gi|153000970|ref|YP_001366651.1| DNA polymerase III subunit delta' [Shewanella baltica OS185] gi|151365588|gb|ABS08588.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS185] Length = 318 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 49/91 (53%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N AANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCTRLTATAQQSGMRVAIIHHSERLNSAAANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +++T+ SRC I F S + L Q Sbjct: 154 PARLMATVSSRCQRIPFVVPSRETIKNWLAQ 184 >gi|304405874|ref|ZP_07387532.1| DNA polymerase III, delta prime subunit [Paenibacillus curdlanolyticus YK9] gi|304345117|gb|EFM10953.1| DNA polymerase III, delta prime subunit [Paenibacillus curdlanolyticus YK9] Length = 325 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 19/186 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G E + L SG++ HA LF G +G G+ L +A + F A D Sbjct: 8 GQEKAKGMLRYALRSGKVSHAYLFSGPRGTGRKALALSFAQAL-----FCTA----GGED 58 Query: 76 PCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR-V 133 C ++ + H LY + P I + +I++++ +S N G R V Sbjct: 59 ACGQCIECRKFEHGNQPDLY---QIEPDG----QSIKLGQIQQLQREMSYR-NVGESRKV 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++ + M AAN+LLK LEEP ++ +L++ +L TIRSR +I F L Sbjct: 111 YIVERAETMTLPAANSLLKFLEEPQSPIVALLLTDNGQAVLPTIRSRVQTIPFAPLGPQQ 170 Query: 194 LYKALE 199 + ALE Sbjct: 171 IVTALE 176 >gi|94676708|ref|YP_588871.1| DNA polymerase III, delta' subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219858|gb|ABF14017.1| DNA polymerase III, delta' subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 332 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G HHALL +G G+ L F+Y + L P P CN + + + +H Sbjct: 21 GTGHHALLICSNKGNGRGLL-FQYLSNWLMCIKPK-GIIPCGQCN----NCHLIKAGTHP 74 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 +F Y L + I++D IR + L ++A+ G +V+ + ++ + + N Sbjct: 75 --NF----YQLEENK---QQSISIDTIRILIDSLYISASMGGAKVVQLSNIELLTKQGTN 125 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ALLK +EEPP+K F+L S +L T+ SRCL I S +E L+Q Sbjct: 126 ALLKIIEEPPEKTYFLLGCLKSSNLLPTLLSRCLFIHLASPNETIGLNWLQQ 177 >gi|261416308|ref|YP_003249991.1| AAA ATPase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372764|gb|ACX75509.1| AAA ATPase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326552|gb|ADL25753.1| putative DNA polymerase III, delta prime subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 374 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI+V+ IR + ++ + RV++I D MN +AANA LK+LEE P FIL + Sbjct: 133 VISVELIRTMTASFAMKGD--RVRVVIIAEADRMNDSAANAFLKTLEEVPPNTYFILTTS 190 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 + +L TIRSRCL++ L++ + + E +++ G Sbjct: 191 SREKLLQTIRSRCLALHLPPLTDEEVRQ--EAIRVGG 225 >gi|167750681|ref|ZP_02422808.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702] gi|167656360|gb|EDS00490.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702] Length = 743 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 FD V +Q E I L +G HA LF G +G GK T A V Sbjct: 14 FDEVISQ-----EHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAV-----NC 63 Query: 66 KAPVRMCNPDPCSPFVKQMA-SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PV + +PC A + D + + + N VD++R +R + Sbjct: 64 LSPV---DGNPCGECESCKAIAAGCPDIIEMDAASN---------NGVDDVRALRDEVMY 111 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID V ++ A NALLK++EEPP V+FIL + + +TI SRC Sbjct: 112 APTVCRYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQF 171 Query: 185 KFNSL 189 +F+ + Sbjct: 172 RFSRI 176 >gi|283478769|emb|CAY74685.1| DNA polymerase III, delta' subunit [Erwinia pyrifoliae DSM 12163] Length = 340 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R HHALL + G+G L + ++ + P + + C +A + D Sbjct: 28 RGHHALLIQALPGMGDDALIWGIGRWLM-----CRQPEGLKSCGKCHACALMLAGNH-PD 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + Y L + GK + +D +R + L A G +V+ + + AANALL Sbjct: 82 W----YQLEAEKGK--NALGIDAVRGVTDKLYHYAQQGGAKVVWLPDAQQLTEAAANALL 135 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCL 182 K+LEEPP+ F+L S +L T+RSRCL Sbjct: 136 KTLEEPPKNTWFLLSSREPSRLLPTLRSRCL 166 >gi|253315922|ref|ZP_04839135.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 187 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 31/192 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---------NSL 189 + + N++LK LEEPP + IL+S IL TI SRC + F N L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRL 159 Query: 190 SENNLYKALEQL 201 E N+ K + ++ Sbjct: 160 VEQNMSKPVAEM 171 >gi|228995423|ref|ZP_04155093.1| DNA polymerase III, delta prime subunit [Bacillus mycoides Rock3-17] gi|229003037|ref|ZP_04160894.1| DNA polymerase III, delta prime subunit [Bacillus mycoides Rock1-4] gi|228758195|gb|EEM07383.1| DNA polymerase III, delta prime subunit [Bacillus mycoides Rock1-4] gi|228764284|gb|EEM13161.1| DNA polymerase III, delta prime subunit [Bacillus mycoides Rock3-17] Length = 310 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA L EG +G GK + A L P C C H Sbjct: 9 GRISHAYLLEGAKGTGKYETAIQMAKSFLCKQRNGVEPCHTCTN--CRRI-----DSGNH 61 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L++ + P I +I ++ S T +V +I+ + M NAAN L Sbjct: 62 PNLHI---VRPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHANRMTANAANTL 114 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LK LEEP IL++ S IL+TI SRC + F LS +L + L+ Sbjct: 115 LKFLEEPSSNTTAILLTEQSHQILNTILSRCQVVTFRPLSTESLIERLQ 163 >gi|157375782|ref|YP_001474382.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157318156|gb|ABV37254.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 304 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 48/79 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R + L+ T+ G RV +I + +N+ +ANALLK+LEEP + L +L S Sbjct: 85 IKVDQVRELCRKLTSTSQQGGRRVAVISNCEKLNQASANALLKTLEEPGNETLLLLQSDT 144 Query: 170 SPTILSTIRSRCLSIKFNS 188 +++TI SRC I F + Sbjct: 145 PSRLMATISSRCQRIHFQA 163 >gi|269217489|ref|ZP_06161343.1| putative DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269213110|gb|EEZ79450.1| putative DNA polymerase III, delta' subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 460 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%) Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA H + + ITV+ R + ++ +G WRV++I+ D M Sbjct: 77 HACHTVMEGKHPDVESVATHGVFITVERTRELVGRSYVSPGSGPWRVVVIEDADRMLERT 136 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 N LLK++EEPP +++L + +S +++TIRSRC + S ++ L Sbjct: 137 TNVLLKAIEEPPPFTVWMLCTPSSEDVMTTIRSRCREVSLAVPSPQDVADLL 188 >gi|218442642|ref|YP_002380962.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424] gi|218175000|gb|ACK73732.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7424] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 13/196 (6%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E I + L S ++ ++ LF G +G GK + R L Sbjct: 14 YRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTA-RILAKALNCKSTP 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + C P +++ +S +++ S++ VD+ R + Sbjct: 73 HSTTHPCGKCPSCQSIERGSSINVNEIDAASHN------------GVDDARSLIEQSHFA 120 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +RV ++D + + NALLK++EE P + +FIL + +L TI SRC + Sbjct: 121 PIDGRYRVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFN 180 Query: 186 FNSLSENNLYKALEQL 201 F + S L + L Q+ Sbjct: 181 FKNTSLKTLSQHLTQI 196 >gi|304372902|ref|YP_003856111.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis HUB-1] gi|304309093|gb|ADM21573.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis HUB-1] Length = 712 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 24/199 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + I + L + ++ HA LF G +G GK ++ F + Sbjct: 10 RKYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFATTLNCSHK 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 D P + C + F D + + + N G VDEIR I Sbjct: 70 TDLF-IPCQKCQDSVNNSF----------DIIEMDGASN--NG-------VDEIRELINN 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +L N+ Y ++ +ID V ++ +A NA LK+LEEPP+ V+FIL + + I TI SR Sbjct: 110 VNNLPTNSQY-KIYIIDEVHMLSSSAFNAFLKTLEEPPKYVIFILATTEAHKIPLTILSR 168 Query: 181 CLSIKFNSLSENNLYKALE 199 F +SE + LE Sbjct: 169 VQRFNFRKISEKEIVSRLE 187 >gi|213691096|ref|YP_002321682.1| AAA ATPase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522557|gb|ACJ51304.1| AAA ATPase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457151|dbj|BAJ67772.1| DNA polymerase III delta' subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 383 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 18/170 (10%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 L G + + S+ G++ + L G G G++ + +A L++PD R Sbjct: 7 LVGQQPVIDMFSRIAQGDPGQITQSWLICGPPGSGRSNMARAFAA-ALESPD------RG 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N +P +Q+ + D L+ + + I +D++R I T W Sbjct: 60 MNDEPTR-VTQQVLAGTHPDVTVLATN--------KVTIGIDQVREIITTSEQMPATAPW 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 R+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 111 RIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501] gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501] Length = 687 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 17/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I L+ S R+ A LF G +G GK + A + N +AP Sbjct: 19 LVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSL--NCLAVEAPTA--- 73 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC + +A + D + + + N TG VD IR I + Sbjct: 74 -SPCGECEVCRAIARGSALDVIEIDAASN--TG-------VDNIREIIERSQFAPVQCRY 123 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRC 173 >gi|229818396|ref|ZP_04448677.1| hypothetical protein BIFANG_03701 [Bifidobacterium angulatum DSM 20098] gi|229784266|gb|EEP20380.1| hypothetical protein BIFANG_03701 [Bifidobacterium angulatum DSM 20098] Length = 382 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 22/174 (12%) Query: 12 QRLFGHEDIEKFLSQYYC--SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKA 67 + + G + + LS S ++ + L G G G++ L +A L++PD Sbjct: 5 ESIIGQKPVCDMLSAIATGDSSKLAQSWLICGPPGSGRSNLARAFAA-ALESPDHGLDAE 63 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P R+ +Q+ + D L+ + I +DE+R + + Sbjct: 64 PTRV---------TRQVLAGTHPDVSILATD--------KVTIGIDEVRELITVSEQMPS 106 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 107 TAPWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|167753906|ref|ZP_02426033.1| hypothetical protein ALIPUT_02191 [Alistipes putredinis DSM 17216] gi|167658531|gb|EDS02661.1| hypothetical protein ALIPUT_02191 [Alistipes putredinis DSM 17216] Length = 381 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 62/307 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++++ L + +GR+ HA LF G G G L Y ++ + Sbjct: 6 VIGQRELKRHLVRGVDAGRVSHAQLFTGRPGAGALPLALAYVQYL--------NCTNRRD 57 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGK--------------WRTV-------- 109 D C P +Q+A A H L+ + +N K GK WR V Sbjct: 58 GDSCGECPNCRQIAGLA-HPDLHFVFPVN-KQGKKSGEAVLSDDFMPLWRQVVSERNGYF 115 Query: 110 ------------------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 I+ E I LS + ++ +++ + MN AAN +L Sbjct: 116 SPQEWYDRLDLGRTLKGAISAREADGIIRKLSFKSFAAKYKCVIVWLPETMNEEAANKIL 175 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K LEEP +K LF+L+S +L TI SR + L++ + LE+ + R Sbjct: 176 KILEEPWEKTLFVLVSERPDLLLPTILSRTQEVVVPRLTDEEVRAELERRGERDPEKIRT 235 Query: 212 FVKIAAYGSVARAIKILHYDCDKIISS----YIDLIHIPRQEYALQKM---QQIADELLS 264 F ++AA G + +L + D++ + L+ + + L+ M +++A LS Sbjct: 236 FTRLAA-GDLIELEHLLRGEGDELRKDDFEFFCSLMRLSYNDKHLELMAWAEEVAQ--LS 292 Query: 265 QDQKIAF 271 ++Q+ AF Sbjct: 293 REQQRAF 299 >gi|217957607|ref|YP_002336149.1| DNA polymerase III subunit delta' [Bacillus cereus AH187] gi|217065638|gb|ACJ79888.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH187] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|15616959|ref|NP_240172.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132951|sp|P57435|HOLB_BUCAI RecName: Full=DNA polymerase III subunit delta' gi|25326348|pir||B84971 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp. (strain APS) gi|10039024|dbj|BAB13058.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 326 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 13/157 (8%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 Q Y + HHA+L + +GIG + L + + +L P+ + + D C K M+ Sbjct: 16 QQYQKKKAHHAILIKTPRGIGVSLLIWFISKWLL-----CLKPIGLNSCDKCHG-CKLMS 69 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 ++ D+ ++ P+ + +++ +R I + + G ++I + + + Sbjct: 70 ANNHPDW----HNFTPEKN---NLFSIESVRIINEKIFTCSRQGGSKIIFLSDTGKLTES 122 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NA LK+LEEPP+K F L+++ + ST+ SRCL Sbjct: 123 AINAFLKTLEEPPRKTWFFLVNYKNLNSHSTLNSRCL 159 >gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C] Length = 604 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 23/253 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 9 VLARKYRPQNFSDLIGQEAMVRTLNNAFTTGRIAQAWMLTGIRGVGKTTTA-RILSRALN 67 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + D + P + D Q+ D + + + TG +D+IR I Sbjct: 68 YKTKDIDQ-PTTLF--DTLGEHCAQIIEGRHIDVVEMDAA--SHTG-------IDDIREI 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI Sbjct: 116 IEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITIL 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHY 230 SRC + L L ++ K+ D + AA GSV A+ I + Y Sbjct: 176 SRCQRFNLQRVETTALVAHLRKISQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAY 235 Query: 231 DCDKIISSYIDLI 243 K+ ++ + L+ Sbjct: 236 SNGKVDTTAVSLM 248 >gi|86747794|ref|YP_484290.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris HaA2] gi|86570822|gb|ABD05379.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris HaA2] Length = 627 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 36 VLARKYRPNSFEDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTA-RILARALN 94 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWR 107 + PD S K P M H +H D L + + + TG Sbjct: 95 YELPDGSVKGPT------------IHMPVHGVHCKAIMESRHMDVLEMDAASH--TG--- 137 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 138 ----VDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 193 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARA 224 + T+ SRC + + L K L G ++++ V++ A G +ARA Sbjct: 194 TEIRKVPVTVLSRCQRFDLRRVEADVLMKHL------GGIAEKEGVEVEAEALGIIARA 246 >gi|57651365|ref|YP_185414.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|87160893|ref|YP_493170.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220660|ref|YP_001331482.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161508729|ref|YP_001574388.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142324|ref|ZP_03566817.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452835|ref|ZP_05700830.1| DNA polymerase III delta subunit [Staphylococcus aureus A5948] gi|262049969|ref|ZP_06022828.1| probable DNA polymerase III, delta prime subunit [Staphylococcus aureus D30] gi|262052515|ref|ZP_06024712.1| probable DNA polymerase III, delta prime subunit [Staphylococcus aureus 930918-3] gi|282925557|ref|ZP_06333210.1| DNA polymerase III subunit delta [Staphylococcus aureus A9765] gi|284023493|ref|ZP_06377891.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus 132] gi|294850343|ref|ZP_06791076.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus A9754] gi|304380500|ref|ZP_07363177.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285551|gb|AAW37645.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|87126867|gb|ABD21381.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373460|dbj|BAF66720.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160367538|gb|ABX28509.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859521|gb|EEV82374.1| DNA polymerase III delta subunit [Staphylococcus aureus A5948] gi|259159562|gb|EEW44609.1| probable DNA polymerase III, delta prime subunit [Staphylococcus aureus 930918-3] gi|259161904|gb|EEW46487.1| probable DNA polymerase III, delta prime subunit [Staphylococcus aureus D30] gi|269940055|emb|CBI48431.1| putative DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus TW20] gi|282592461|gb|EFB97473.1| DNA polymerase III subunit delta [Staphylococcus aureus A9765] gi|294822767|gb|EFG39203.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus A9754] gi|302750374|gb|ADL64551.1| DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340945|gb|EFM06868.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196164|gb|EFU26520.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320139431|gb|EFW31309.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144208|gb|EFW35976.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|329313202|gb|AEB87615.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus T0131] gi|329729789|gb|EGG66186.1| hypothetical protein SA21189_0835 [Staphylococcus aureus subsp. aureus 21189] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 31/192 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---------NSL 189 + + N++LK LEEPP + IL+S IL TI SRC + F N L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRL 159 Query: 190 SENNLYKALEQL 201 E N+ K + ++ Sbjct: 160 VEQNMSKPVAEM 171 >gi|89892868|ref|YP_516355.1| hypothetical protein DSY0122 [Desulfitobacterium hafniense Y51] gi|89332316|dbj|BAE81911.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 295 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 16/183 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR+ H LLF G G + G A + AP C P K++ S Sbjct: 27 EGRLAHLLLFHGGSGPERRKAGLEIARRI-NCTSGQDAPCGHC------PSCKKILSGNH 79 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + + I +++I + + G ++V +++ D + AANA Sbjct: 80 PDVEVVKPA--------KASIGIEQILDWQERVYRKHYEGNYKVFILEEADKLTIPAANA 131 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK +EEPP++ L +L + + +L TI+SR ++ F E K+LE+ + W+++ Sbjct: 132 LLKVIEEPPERTLIVLSAQNAEVLLPTIQSRAQAVYFPFRGEEEWLKSLEE-SLDPWEAR 190 Query: 210 RDF 212 F Sbjct: 191 EAF 193 >gi|169824823|ref|YP_001692434.1| putative DNA polymerase III subunit delta [Finegoldia magna ATCC 29328] gi|167831628|dbj|BAG08544.1| putative DNA polymerase III delta subunit [Finegoldia magna ATCC 29328] Length = 272 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 53/99 (53%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + IT+D+IR I F+S +V++I D M A+NALLK+LEEP V FIL+ Sbjct: 68 KNSITIDKIRDIAKFVSTKPFESNNKVVLIRQADLMRTEASNALLKNLEEPKSFVYFILL 127 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 + +L TI SRC I + EN + + L I+ Sbjct: 128 TDNKNKLLKTIISRCQVINYLKERENQEFDYSQMLDILD 166 >gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 654 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 17/170 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G I LS S R+ A LF G +G GK + A + N S P Sbjct: 18 LVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL--NCLSSDHP----T 71 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P PC + +A+ + D + + + N TG VD IR I + Sbjct: 72 PIPCGKCSVCQAIANGSALDVIEIDAASN--TG-------VDNIREIIERSQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRC 172 >gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae TN] gi|221230735|ref|YP_002504151.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae Br4923] gi|3150103|emb|CAA19155.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae] gi|13093951|emb|CAC31851.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae] gi|219933842|emb|CAR72433.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae Br4923] Length = 611 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 13/191 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 5 RKYRPAAFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C + C H D + L + + VD+ R +R Sbjct: 65 TTATPCGVC--ESCLSLAPNAPGHI--DVVELDAASHGG---------VDDTRELRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +RV ++D + NALLK +EEPP ++FI + +L TIRSR Sbjct: 112 YAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPDHLIFIFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNL 194 F LS + Sbjct: 172 YPFRLLSPRTM 182 >gi|227487307|ref|ZP_03917623.1| DNA polymerase III subunits gamma and tau [Corynebacterium glucuronolyticum ATCC 51867] gi|227092733|gb|EEI28045.1| DNA polymerase III subunits gamma and tau [Corynebacterium glucuronolyticum ATCC 51867] Length = 829 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 13/185 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E + + LS SG + HA LF G +G GK + A + + Sbjct: 7 YRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNCEHGPT 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + D L + + +VD++R +R Sbjct: 67 STPCGEC--DSCRALAPGGTGNL--DVTELDAASH---------GSVDDMRELRESAVFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +R+ +ID + ANALLK +EEPP+ ++FI + I+ TIRSR Sbjct: 114 PSESRYRIFIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYP 173 Query: 186 FNSLS 190 F L+ Sbjct: 174 FRLLT 178 >gi|297582373|ref|YP_003698153.1| DNA polymerase III subunit delta' [Bacillus selenitireducens MLS10] gi|297140830|gb|ADH97587.1| DNA polymerase III, delta prime subunit [Bacillus selenitireducens MLS10] Length = 330 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 14/176 (7%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 L + R+ HA LFEG +G GK + A L S P C C Sbjct: 18 ILKRTIEKNRLAHAYLFEGSRGTGKQEIAKLVAKAFLCQVRESADPCGDCGD--C----- 70 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + H ++L + P T I V++IR ++ S+ +V ++ D M Sbjct: 71 RRVDSGNHPDVHL---IEPDG----TTIKVEQIRGLKKEFSMRGMESGRKVYLVQDADLM 123 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +A N+LLK LEEP + L IL++ IL TI SR + F+ L+ + K L Sbjct: 124 TASAGNSLLKFLEEPDGEALAILMTTRPQRILKTILSRVQVLSFHPLAPDEFVKTL 179 >gi|145294359|ref|YP_001137180.1| DNA polymerase III subunits gamma and tau [Corynebacterium glutamicum R] gi|140844279|dbj|BAF53278.1| hypothetical protein [Corynebacterium glutamicum R] Length = 741 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 17/178 (9%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 LS SGR++HA LF G +G GK + + + ++ P + P +CN S Sbjct: 5 LSAALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGP--TSTPCGVCN----SCVA 58 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 D L + N VD++R +R + +RV +ID Sbjct: 59 LAPGGPGTLDVTELDAASN---------NGVDDMRELRERANYAPAESRYRVFIIDEAHM 109 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 ++ NALLK +EEPP ++FI + ++ TIRSR + F L+ ++ K L+ Sbjct: 110 ISTQGFNALLKIVEEPPAHLIFIFATTEPDKMIGTIRSRTHNYPFRLLTPGDMRKVLK 167 >gi|88705168|ref|ZP_01102880.1| DNA polymerase III, delta prime subunit [Congregibacter litoralis KT71] gi|88700863|gb|EAQ97970.1| DNA polymerase III, delta prime subunit [Congregibacter litoralis KT71] Length = 288 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 8/132 (6%) Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 AS AL D L + + + GK I ++ IR + F + T + G ++VI+I P + + Sbjct: 43 ASGALPDLLSVGPA---EEGK---AIGINAIREVIRFAAGTPSLGRYKVILITPAESLTT 96 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 A NA LK LEEP + IL+S + +TIRSRC + S E + L+ K + Sbjct: 97 AAFNAFLKCLEEPASETFIILVSARGFPLPATIRSRCQRWQLPSPEEEAAQEWLK--KEL 154 Query: 205 GWDSKRDFVKIA 216 G ++ D A Sbjct: 155 GQQAEADGAASA 166 >gi|302379706|ref|ZP_07268191.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302312613|gb|EFK94609.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 272 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 53/99 (53%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + IT+D+IR I F+S +V++I D M A+NALLK+LEEP V FIL+ Sbjct: 68 KNSITIDKIRDIAKFVSTKPFESNNKVVLIRQADLMRTEASNALLKNLEEPKSFVYFILL 127 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 + +L TI SRC I + EN + + L I+ Sbjct: 128 TDNKNKLLKTIISRCQVINYLKERENQEFDYSQMLDILD 166 >gi|301051767|ref|YP_003789978.1| DNA polymerase III subunit delta [Bacillus anthracis CI] gi|300373936|gb|ADK02840.1| DNA polymerase III subunit delta [Bacillus cereus biovar anthracis str. CI] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|126731114|ref|ZP_01746922.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37] gi|126708416|gb|EBA07474.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37] Length = 587 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P DPC +A + +TG V +IR I Sbjct: 69 IGPDGNGGPTT----DPCGKCEHCVAIMEGRHVDVMEMDAASRTG-------VGDIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++++A NALLK+LEEPP V FI + + T+ S Sbjct: 118 ESVHYRAASARYKIYIIDEVHMLSKSAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLS 177 Query: 180 RC 181 RC Sbjct: 178 RC 179 >gi|15926161|ref|NP_373694.1| DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus N315] gi|13700374|dbj|BAB41672.1| probable DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus N315] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 31/192 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---------NSL 189 + + N++LK LEEPP + IL+S IL TI SRC + F N L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRL 159 Query: 190 SENNLYKALEQL 201 E N+ K + ++ Sbjct: 160 VEQNMSKPVAEM 171 >gi|319440483|ref|ZP_07989639.1| DNA polymerase III subunit delta' [Corynebacterium variabile DSM 44702] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 20/196 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGH-VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ LF G G G++ +A V NP V D C + A+ + D Sbjct: 50 MTHSWLFTGPPGSGRSVAAKAFATALVCDNPSV----VGCGECDQC----RSAAAGSHPD 101 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 ++ I V+ +R I ++ + WRV++++ D + + ANALL Sbjct: 102 ISWIRTD--------GVTIPVEVVRDIIRTSAVLPSVARWRVVIVEDADRLGDSGANALL 153 Query: 152 KSLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGW-DS 208 KS+EEPP +F+L + ++ P +S T+RSRC + + S+ + L +G D Sbjct: 154 KSVEEPPAHTVFLLCAPSTDPEDISITLRSRCRHVYVPTPSKEEVEAVLRADAALGLSDE 213 Query: 209 KRDFVKIAAYGSVARA 224 + + + G + RA Sbjct: 214 QAHWAAEVSGGHIGRA 229 >gi|229100820|ref|ZP_04231635.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-28] gi|228682587|gb|EEL36649.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-28] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLSRRLQ 180 >gi|33239603|ref|NP_874545.1| DNA polymerase III subunit delta' [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237128|gb|AAP99197.1| ATPase involved in DNA replication [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 316 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY----AGHVLQNPDFSKAPVRMCNPD-- 75 + LS GR+ LF+G +G+ + + FR+ A + + + + +PD Sbjct: 19 ELLSSSLEQGRVAPTYLFKGPKGVLQKEIAFRFLEGIADQSINSKNIRNRLISGNHPDLY 78 Query: 76 ---PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 P + + + P+ I V++I+ ++ FL+ Sbjct: 79 LIEPTYLMQGNLIKQSDAKNESFKNHIEPQ-------IRVEQIKDLKVFLNKKPVESTLS 131 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 + +++ VD +N +A+NALLK++EEP VL ILIS +L TI+SRC I F EN Sbjct: 132 MALLEDVDTLNESASNALLKTIEEPTSSVL-ILISSRPERLLDTIKSRCQIIPFKPF-EN 189 Query: 193 NL 194 +L Sbjct: 190 DL 191 >gi|258446129|ref|ZP_05694290.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855106|gb|EEV78048.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 31/192 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---------NSL 189 + + N++LK LEEPP + IL+S IL TI SRC + F N L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRL 159 Query: 190 SENNLYKALEQL 201 E N+ K + ++ Sbjct: 160 VEQNMSKPVAEM 171 >gi|42779110|ref|NP_976357.1| DNA polymerase III subunit delta' [Bacillus cereus ATCC 10987] gi|42735025|gb|AAS38965.1| DNA polymerase III, delta prime subunit [Bacillus cereus ATCC 10987] gi|324324021|gb|ADY19281.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar finitimus YBT-020] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|330470589|ref|YP_004408332.1| DNA polymerase III subunits gamma and tau [Verrucosispora maris AB-18-032] gi|328813560|gb|AEB47732.1| DNA polymerase III, subunits gamma and tau [Verrucosispora maris AB-18-032] Length = 966 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPRTFAEVIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P+PC + + S + G VD+ R +R Sbjct: 63 CEHGPT----PEPCGVCASCRSLGSDGAGSIDVIEIDAASHGG-------VDDARELREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 112 AFFAPASSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 172 HHYPFRLIPPKVLRPYLEQL 191 >gi|313887549|ref|ZP_07821232.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846427|gb|EFR33805.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 312 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 29/229 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HA LF G +GIGK + +A +L + P+ + + + + FV Q Sbjct: 23 HAYLFSGSKGIGKFSHAKNFARSILKETPEGIRFFSGIDDFEDADLFVVQ---------- 72 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 T K + + + E + F +G ++++ID D + NALLK+ Sbjct: 73 ------KKDTIKKQDIEEIIENSFSKPF------SGSHKIVIIDDFDRVTAEGQNALLKT 120 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 LEEP ++ ILIS IL TI SRC +KF L+++ L + L K+ ++K F Sbjct: 121 LEEPMDYLILILISSNMRNILPTIISRCRILKFQDLTQDRLEEFLLSRKLSPRNAKL-FS 179 Query: 214 KIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADEL 262 +++ G V+ AIK + + +++S D+I++ + ++K + I DE+ Sbjct: 180 RLSN-GDVSLAIK--YSEDPELLSKREDIINMT--DRIIRKTEFIFDEM 223 >gi|229094753|ref|ZP_04225759.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-29] gi|229113706|ref|ZP_04243142.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-3] gi|228669703|gb|EEL25109.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-3] gi|228688621|gb|EEL42493.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-29] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNEVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLSRRLQ 180 >gi|153956411|ref|YP_001397176.1| DNA polymerase III subunits gamma and tau [Clostridium kluyveri DSM 555] gi|219856723|ref|YP_002473845.1| hypothetical protein CKR_3380 [Clostridium kluyveri NBRC 12016] gi|146349269|gb|EDK35805.1| DnaX [Clostridium kluyveri DSM 555] gi|219570447|dbj|BAH08431.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 553 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 19/197 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L + R+ HA LF G +G GK ++ + + D Sbjct: 8 REWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMA-KILAKAVNCLD 66 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +PC+ K++ D + + + K + VI ++Y Sbjct: 67 IQQG-------EPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVI-----ENVKY- 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 ---PPQEGKYKVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL 198 F + + ++ L Sbjct: 171 QKFDFRRIKSSEIFNRL 187 >gi|146293309|ref|YP_001183733.1| DNA polymerase III subunit delta' [Shewanella putrefaciens CN-32] gi|145564999|gb|ABP75934.1| DNA polymerase III, delta prime subunit [Shewanella putrefaciens CN-32] Length = 318 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 46/80 (57%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 R I VD+IR + L+ TA RV +I + +N +ANALLK+LEEP + L IL Sbjct: 91 RNQIKVDQIRELCVRLTATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLILQ 150 Query: 167 SHASPTILSTIRSRCLSIKF 186 S +++TI SRC I F Sbjct: 151 SDTPARLMATISSRCQRIPF 170 >gi|113474658|ref|YP_720719.1| DNA polymerase III s gamma and tau [Trichodesmium erythraeum IMS101] gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium erythraeum IMS101] Length = 695 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 24/208 (11%) Query: 5 AFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG- 56 A++P++++ L G + I + L+ + R+ A LF G +G GK + A Sbjct: 2 AYEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKS 61 Query: 57 -HVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + L + +P CN C K + D + + + N TG VD I Sbjct: 62 LNCLSYDHPTPSPCGTCNV--CVGITK----GSTLDVIEIDAASN--TG-------VDNI 106 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + ++V +ID V ++ +A NALLK+LEEPP+ V+FIL + +L+ Sbjct: 107 RELIERSQFAPVQCRYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLA 166 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKI 203 TI SRC F + + K L + I Sbjct: 167 TIISRCQRFDFRRIPLEAMVKHLHHIAI 194 >gi|242241569|ref|ZP_04796014.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis W23144] gi|242234950|gb|EES37261.1| DNA-directed DNA polymerase III delta' subunit [Staphylococcus epidermidis W23144] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 40/207 (19%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + + +L N N + C Sbjct: 2 DEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCN-----------NSNQCE 50 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 V +H DF Y+S N I ++I ++ + ++ G ++V +I+ Sbjct: 51 LKVDTF-NHP--DFSYVSSDEN--------TIKKEQIEQLVHHMNQLPIEGQYKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + N++LK LEEPP + IL+S IL TI SRC + F + Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPI--------- 150 Query: 199 EQLKIMGWDSKRDFVKIAAYGSVARAI 225 KR F++ SVAR + Sbjct: 151 ---------DKRQFIERLVEMSVARPV 168 >gi|15923474|ref|NP_371008.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Mu50] gi|148266942|ref|YP_001245885.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150392988|ref|YP_001315663.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|156978812|ref|YP_001441071.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Mu3] gi|255005277|ref|ZP_05143878.2| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794275|ref|ZP_05643254.1| DNA-directed DNA polymerase [Staphylococcus aureus A9781] gi|258407208|ref|ZP_05680353.1| DNA-directed DNA polymerase [Staphylococcus aureus A9763] gi|258420826|ref|ZP_05683762.1| DNA-directed DNA polymerase [Staphylococcus aureus A9719] gi|258429600|ref|ZP_05688274.1| DNA-directed DNA polymerase [Staphylococcus aureus A9299] gi|258448037|ref|ZP_05696167.1| DNA-directed DNA polymerase [Staphylococcus aureus A6224] gi|258453816|ref|ZP_05701789.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|269202103|ref|YP_003281372.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus ED98] gi|282895090|ref|ZP_06303310.1| DNA polymerase III subunit delta [Staphylococcus aureus A8117] gi|295407372|ref|ZP_06817169.1| DNA polymerase III subunit delta [Staphylococcus aureus A8819] gi|296276561|ref|ZP_06859068.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus MR1] gi|297246452|ref|ZP_06930292.1| DNA polymerase III subunit delta [Staphylococcus aureus A8796] gi|14246252|dbj|BAB56646.1| probable DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Mu50] gi|147740011|gb|ABQ48309.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945440|gb|ABR51376.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|156720947|dbj|BAF77364.1| probable DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Mu3] gi|257788247|gb|EEV26587.1| DNA-directed DNA polymerase [Staphylococcus aureus A9781] gi|257841166|gb|EEV65615.1| DNA-directed DNA polymerase [Staphylococcus aureus A9763] gi|257843218|gb|EEV67631.1| DNA-directed DNA polymerase [Staphylococcus aureus A9719] gi|257849659|gb|EEV73626.1| DNA-directed DNA polymerase [Staphylococcus aureus A9299] gi|257858727|gb|EEV81600.1| DNA-directed DNA polymerase [Staphylococcus aureus A6224] gi|257863987|gb|EEV86742.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|262074393|gb|ACY10366.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus ED98] gi|282762508|gb|EFC02648.1| DNA polymerase III subunit delta [Staphylococcus aureus A8117] gi|285816183|gb|ADC36670.1| DNA polymerase III delta prime subunit [Staphylococcus aureus 04-02981] gi|294967729|gb|EFG43761.1| DNA polymerase III subunit delta [Staphylococcus aureus A8819] gi|297176639|gb|EFH35901.1| DNA polymerase III subunit delta [Staphylococcus aureus A8796] gi|312828979|emb|CBX33821.1| DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128609|gb|EFT84612.1| probable DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329725050|gb|EGG61545.1| hypothetical protein SA21172_2497 [Staphylococcus aureus subsp. aureus 21172] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 31/192 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---------NSL 189 + + N++LK LEEPP + IL+S IL TI SRC + F N L Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRL 159 Query: 190 SENNLYKALEQL 201 E N+ K + ++ Sbjct: 160 VEQNMSKPVAEM 171 >gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] gi|325553081|gb|EGD22761.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] Length = 398 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 29/196 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + + LS +GR++HA LF G +G GK T R L C Sbjct: 1 MVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGK-TSSARILARSLN-----------CV 48 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--------EIRRIRYFLSLT 125 P S + AS +L P VI +D + R +R Sbjct: 49 QGPTSTPCGECAS---------CIALGPGGAGNLDVIELDAASHGGVEDTRELRDRAFYA 99 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 100 PAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYP 159 Query: 186 FNSLSENNLYKALEQL 201 F L+ + + LE++ Sbjct: 160 FRLLAPSTMRGLLEKI 175 >gi|289571965|ref|ZP_06452192.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T17] gi|289545719|gb|EFD49367.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T17] Length = 409 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 21/242 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS +GR++HA LF G +G GK + A + ++ + Sbjct: 5 RKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTS----SARILARSLN 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P NP +A +A + G VD+ R +R Sbjct: 61 CAQGPT--ANPCGVCESCVSLAPNAPGSIDVVELDAASHGG-------VDDTRELRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 112 YAPVQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F L L + EQ ++ D+ V A GS + +L D++++ Sbjct: 172 YPFRLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL----DQLLAGA 227 Query: 240 ID 241 D Sbjct: 228 AD 229 >gi|257783925|ref|YP_003179142.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM 20469] gi|257472432|gb|ACV50551.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM 20469] Length = 755 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 16/194 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +++ G + + L + ++ HA LF G +G GK T+ A +L + Sbjct: 8 YRPQTFEQVVGQKHVVGTLKRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAILCH---- 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSL 124 +AP + PD + +A+ D + + N TG VD +R I S Sbjct: 64 EAPGHL--PDGTCEDCQLIAAGQHPDVFEIDAASN--TG-------VDNVREEIISRASY 112 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G +V +ID V + A NALLK+LEEPP V FI+ + IL+TI SR Sbjct: 113 APVCGKGKVYIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSRVQRF 172 Query: 185 KFNSLSENNLYKAL 198 F S++ + + + L Sbjct: 173 DFRSIAADEMAEHL 186 >gi|308066854|ref|YP_003868459.1| ATPase involved in DNA replication [Paenibacillus polymyxa E681] gi|305856133|gb|ADM67921.1| ATPase involved in DNA replication [Paenibacillus polymyxa E681] Length = 331 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q + G + +K L + ++HA +F G G G+ + +A + Sbjct: 4 QHIMGQDVAKKMLQSALRNHTVNHAYVFSGPPGSGQMNMAQIFAKALF---------CER 54 Query: 72 CNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C + + H H L++ + P I +D+IR ++ S + + Sbjct: 55 QTDDACGECLSCRKVEHGNHPDLHI---VEPDGA----TIKIDQIRGLQRIFSYKSESSN 107 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +I D M AAN+LLK LEEP V+ ILIS +L TI+SR + F++L Sbjct: 108 PKVYIIRQADTMTVQAANSLLKFLEEPQIPVVGILISENGQALLPTIQSRTQQVPFHALQ 167 Query: 191 ENNLYKAL 198 + +AL Sbjct: 168 PEVMMQAL 175 >gi|312200643|ref|YP_004020704.1| DNA polymerase III subunits gamma and tau [Frankia sp. EuI1c] gi|311231979|gb|ADP84834.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EuI1c] Length = 833 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 25/181 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G E + L Q +GR+HHA LF G +G GK + A + + Sbjct: 9 YRPATFSQVVGQEHVTSALMQALRTGRLHHAYLFSGPRGCGKTSSARILAASL----NCE 64 Query: 66 KAPVRMCNPDPCSP-----FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K P PDPC ++ +S + + S+ L VD+ R +R Sbjct: 65 KGP----TPDPCGVCDQCVSIRTGSSMDVTEIDAASHGL------------VDDARDLRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 109 RAFFAPASARFKIFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSR 168 Query: 181 C 181 Sbjct: 169 T 169 >gi|222475625|ref|YP_002564042.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str. Florida] gi|254995430|ref|ZP_05277620.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str. Mississippi] gi|255003618|ref|ZP_05278582.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str. Puerto Rico] gi|222419763|gb|ACM49786.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str. Florida] Length = 514 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD L G + + + L + G + +L G G+GK T R L Sbjct: 50 RSFD-----DLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCA-RIVSLCLNC-- 101 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYF 121 V PDPC H+ + + S NP + VD+IR + Sbjct: 102 -----VNGPTPDPCG---------TCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLEN 147 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S + ++V +ID V ++ +A NALLK+LE+P + V F++ + + T+ SRC Sbjct: 148 SSYLPTSSRYKVYIIDEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRC 207 Query: 182 LSIKFNSLSENNLYKALEQL 201 + L+ + L+ L ++ Sbjct: 208 HRLDLFKLTTDQLFAHLVEI 227 >gi|56417261|ref|YP_154335.1| DNA polymerase III gamma subunit [Anaplasma marginale str. St. Maries] gi|56388493|gb|AAV87080.1| DNA polymerase III gamma subunit [Anaplasma marginale str. St. Maries] Length = 474 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD L G + + + L + G + +L G G+GK T R L Sbjct: 10 RSFD-----DLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCA-RIVSLCLNC-- 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYF 121 V PDPC H+ + + S NP + VD+IR + Sbjct: 62 -----VNGPTPDPCG---------TCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLEN 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S + ++V +ID V ++ +A NALLK+LE+P + V F++ + + T+ SRC Sbjct: 108 SSYLPTSSRYKVYIIDEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRC 167 Query: 182 LSIKFNSLSENNLYKALEQL 201 + L+ + L+ L ++ Sbjct: 168 HRLDLFKLTTDQLFAHLVEI 187 >gi|320094885|ref|ZP_08026621.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral taxon 178 str. F0338] gi|319978181|gb|EFW09788.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral taxon 178 str. F0338] Length = 407 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E + + L + R+ HA LF G +G GK T A + Q Sbjct: 3 RRYRPDTFDEVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNCAQG 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + AP C K++A+ + G VD+ R +R Sbjct: 63 P--TDAPCGQCA------SCKELATGGSGSLDVVEIDAASHGG-------VDDARDLRER 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 108 ATFAPVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRT 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L L++L ++ D V + GSV + +L D++++ Sbjct: 168 HHYPFRLVPPDVLGPYLKELCAQERVRVGDGVLPMVMRSGGGSVRDTLSVL----DQLMA 223 Query: 238 SYID 241 ID Sbjct: 224 GAID 227 >gi|241668940|ref|ZP_04756518.1| DNA polymerase III, delta prime subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877472|ref|ZP_05250182.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843493|gb|EET21907.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 302 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I+ +D +N +AANALLK+LEEP F++ + Sbjct: 72 IKVSEIKKIIKNCELTAHNNLAKIIIIEELDLLNESAANALLKTLEEPTADTFFLMFTKN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 IL T++SR + IKF Sbjct: 132 YTDILPTVKSRSIVYDIKF 150 >gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106] gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106] Length = 683 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 17/175 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G + I L+ GR+ A LF G +G GK + A + L + + P Sbjct: 18 LVGQDAIATTLTNAIHRGRIVPAYLFTGPRGTGKTSSARILAKSLNCLSTDEPTATPCGT 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C K + + + D + + + N TG VD IR + + Sbjct: 78 CA------VCKGITNGSTLDVIEIDAASN--TG-------VDNIRELIERAQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC F Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDF 177 >gi|295425171|ref|ZP_06817875.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus amylolyticus DSM 11664] gi|295065147|gb|EFG56051.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus amylolyticus DSM 11664] Length = 556 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VDEIR IR + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + Sbjct: 52 VDEIRDIRDKVKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQ 111 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + +T+ SR F +S+ +L + L+Q KI + + A G + A+ I Sbjct: 112 KVPATVISRTQRYNFKRISKADLEQRMKYILDQEKIKYDEKALAVIAQVADGGMRDALSI 171 Query: 228 L 228 L Sbjct: 172 L 172 >gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] Length = 922 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DE+R +R + Sbjct: 68 PTDHPCNECS------ACKSILSGQSMDVLEIDAASN---------RGIDEVRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALE---QLKIMGWD-SKRDFVKIAAYGSVARAIKIL 228 F ++ +++ + L + + G D + + + A G + A+ IL Sbjct: 173 YTFRRITSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSIL 221 >gi|256852111|ref|ZP_05557498.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii 27-2-CHN] gi|260661319|ref|ZP_05862232.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii 115-3-CHN] gi|282934780|ref|ZP_06340018.1| DNA replication ATPase [Lactobacillus jensenii 208-1] gi|297205014|ref|ZP_06922410.1| DNA polymerase III, delta subunit [Lactobacillus jensenii JV-V16] gi|256615523|gb|EEU20713.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii 27-2-CHN] gi|260547774|gb|EEX23751.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii 115-3-CHN] gi|281301143|gb|EFA93449.1| DNA replication ATPase [Lactobacillus jensenii 208-1] gi|297149592|gb|EFH29889.1| DNA polymerase III, delta subunit [Lactobacillus jensenii JV-V16] Length = 282 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +++D+IR ++ L+ + G R I+ + AANALL LEEP V IL+++ Sbjct: 86 LSIDQIRPLKEELAKSPVEGTRRFFFIENAQTLTMPAANALLNLLEEPVAPVTTILLTNN 145 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 + IL TIRSR ++FN L EN+ + L + G+ S+ D + G + +A+K Sbjct: 146 AQQILPTIRSRTQILEFNDLVENS--SKDQDLLLYGF-SQEDLDNLGETGELDQAVK 199 >gi|33860689|ref|NP_892250.1| DNA polymerase III subunit delta' [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633631|emb|CAE18588.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 319 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 14/192 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ----NPDFSKA 67 + L ++++ + L S + +F G +GIGK ++ + N + K Sbjct: 7 ENLLINQEVNENLESILKSKAFSNGYIFYGPEGIGKKQTAMKFIMEIFNKYSSNSNIEKK 66 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + +PD F+ ++ L ++ S T + I +++IR ++ FL + Sbjct: 67 IIDKNHPD----FLLIEPTYFFKGNL-INRSEAETTKNNKETIRIEQIRNLKTFLGQKSI 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++++ID MN A+N LLK+LEEP + FIL++ +L TI SRC I+F Sbjct: 122 ESGGKIVLIDDAHLMNEAASNCLLKTLEEPSNGI-FILLTSRLNLLLDTIISRCQLIRFK 180 Query: 188 SLSENNLYKALE 199 + S YK LE Sbjct: 181 AFS----YKQLE 188 >gi|315605269|ref|ZP_07880315.1| DNA-directed DNA polymerase III subunit delta' [Actinomyces sp. oral taxon 180 str. F0310] gi|315313086|gb|EFU61157.1| DNA-directed DNA polymerase III subunit delta' [Actinomyces sp. oral taxon 180 str. F0310] Length = 397 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 47/74 (63%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 ++I V+ R + + + G WRVI+++ D + ANALLK++EEPP+ +++L + Sbjct: 103 SIINVETARSLVLQAQSSPSQGLWRVIVVEDADRLGEAGANALLKAIEEPPEHTVWLLCA 162 Query: 168 HASPTILSTIRSRC 181 + +++TIRSRC Sbjct: 163 PSPEDMIATIRSRC 176 >gi|227431248|ref|ZP_03913302.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353010|gb|EEJ43182.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 578 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 33/191 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD + Q++ I + L + + HA LF G +G GK + +A V Sbjct: 18 RSFDDMVGQKI-----ITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFAREV----- 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + + D + + + N G VDEIR IR + Sbjct: 68 --------------NGIAPETDDSQIPDIIEIDAASN--NG-------VDEIRNIRDGAN 104 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK+LEEPP V FIL + I +TI SR Sbjct: 105 YAPIESEYKIYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQR 164 Query: 184 IKFNSLSENNL 194 +F + + + Sbjct: 165 FEFKRIDNDTI 175 >gi|206977921|ref|ZP_03238808.1| DNA polymerase III, delta prime subunit [Bacillus cereus H3081.97] gi|206743827|gb|EDZ55247.1| DNA polymerase III, delta prime subunit [Bacillus cereus H3081.97] Length = 327 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRDGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|145592779|ref|YP_001157076.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica CNB-440] gi|145302116|gb|ABP52698.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica CNB-440] Length = 808 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPRTFAEVIGQEHVTEPLSQALRGGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P P+PC + +A+ + G VD+ R +R Sbjct: 63 CEHGP----TPEPCGTCASCRALATDGAGSIDVIEIDAASHGG-------VDDARELREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 112 AFFAPAQSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 172 HHYPFRLIPPKVLRPYLEQL 191 >gi|313885452|ref|ZP_07819202.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619182|gb|EFR30621.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] Length = 326 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 ++ + SQ + HA F G K+ L R+ L N DFS +PD + Sbjct: 2 LDAYFSQLIAQQNLAHAYAFVGLAYEEKSDL-VRHILKELVNADFS-------DPDQVAS 53 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ DF Y L+P I VD++R ++ +LSL+ +++ ++D Sbjct: 54 LHARIDQGQFADF----YQLSPNGRN----IQVDQVRELKQWLSLSPVEVDFKLAVVDQA 105 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +N ++ANA+L LEEP +V IL +L TI+SR +I F S Sbjct: 106 QLLNASSANAMLTFLEEPLDQVYIILFCQQFEDLLPTIQSRVQAIYFQEES 156 >gi|271970480|ref|YP_003344676.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513655|gb|ACZ91933.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 727 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 87/362 (24%), Positives = 138/362 (38%), Gaps = 66/362 (18%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L Q SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD---------- 113 K P PDPC +A L P VI +D Sbjct: 63 CEKGP----TPDPCGECESCVA-------------LAPTGPGHLDVIEIDAASHGGVDDA 105 Query: 114 -EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 ++R +F ++A +++ +ID + R NALLK +EEPP + F+ + Sbjct: 106 RDLRERAFFAPVSAR---FKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEK 162 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL----KI------------MGWDSKRDFVKI- 215 ++ TI+SR F + L +E++ K+ G S RD + I Sbjct: 163 VIGTIKSRTHHYPFRLIPPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSIL 222 Query: 216 --------AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ 267 A + ARA+ +L Y ++ I Q + ++ E + Sbjct: 223 DQLFAGSDEAGITYARAVSLLGYTDGDLLDDVIAAFAARDGAQVFQAVNRVI-EGGHDPR 281 Query: 268 KIAFDFLIEFILKEICKSAKAAALSGQLEE-ADQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 + A D L F I + AA SG L+ AD++ ++ V + L R I Sbjct: 282 RFAMDLLERFRDLVILANVPEAAGSGLLDRPADELERLQAQAV----SMGPAELTRAAEI 337 Query: 327 FH 328 F+ Sbjct: 338 FN 339 >gi|222823495|ref|YP_002575069.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari RM2100] gi|222538717|gb|ACM63818.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari RM2100] Length = 510 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 46/290 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + L + R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELVGQSTVSISLKYALENNRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPV--RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE-IRRIRYFL 122 +A V N +PC + ++S + + R++ + E I +++Y Sbjct: 59 RALVCENGPNANPCGKCSQCVSSLNGSNIDIIEMD----AASHRSLEDIQELIEQVKYAP 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S+ +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 115 SM----ARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQ 170 Query: 183 SIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---------H 229 +F +S+ + K LEQ KI + + GS+ + +L H Sbjct: 171 HFRFKQISQQEILKHLEWILEQEKISYEKEALKLIARSGNGSLRDTLTLLDQAIVYCQNH 230 Query: 230 YDCDKIIS--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 KI + ++D P K+++ +L+ ++ F+FL EF Sbjct: 231 IQTQKITAMLGFLD----P------AKIEEFYQAILANEKDKVFEFLKEF 270 >gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897831|gb|EFG77419.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 625 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS +GR++HA LF G +G GK + + + +Q Sbjct: 20 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 79 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C + C+ +A +A + G VD+ R +R Sbjct: 80 P--TANPCGVC--ESCT----ALAPNAPGSIDVVELDAASHGG-------VDDTRELRDR 124 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 125 AFYAPAQSRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 184 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 185 HHYPFRLLPPKTMRALIGRICEQEGVVVDDAVFPLVIRAGGGSPRDTLSVL 235 >gi|229074093|ref|ZP_04207140.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock4-18] gi|228708987|gb|EEL61113.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock4-18] Length = 327 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNEVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLSRRLQ 180 >gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424] gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7424] Length = 730 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 17/187 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G E I + L + R+ A LF G +G GK + A + L + + P Sbjct: 18 LVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCLSSDKPTPIPCGT 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C K +A + D + + + N TG VD IR I + Sbjct: 78 CE------VCKAIARSSALDIIEIDAASN--TG-------VDNIREIIERAQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ A NALLK+LEEPP V+F+L + +L TI SRC + + Sbjct: 123 KVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182 Query: 192 NNLYKAL 198 ++ K L Sbjct: 183 EDMVKHL 189 >gi|198276318|ref|ZP_03208849.1| hypothetical protein BACPLE_02513 [Bacteroides plebeius DSM 17135] gi|198270760|gb|EDY95030.1| hypothetical protein BACPLE_02513 [Bacteroides plebeius DSM 17135] Length = 376 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 43/251 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E +++ L +G+M HA+L G G GK + A ++L + CN Sbjct: 7 VIGQEGVKQLLIHSAKNGKMPHAVLLTGPAGSGKLPVALAVARYLLCHHPAENDACGQCN 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSL-NPKTGK----------WRTV------------- 109 C +M H H ++ ++ + K G+ WR + Sbjct: 67 S--C-----KMMDHLAHPDMHFAFPVVRKKAGRDVVCDEFLPQWREMLGRNPYADLQEWM 119 Query: 110 -----------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 I V E I+ LSL A+ G ++V++I + MN AN LLK LEEPP Sbjct: 120 RVIDAGNQQPQIYVRESDEIQRKLSLKASQGGYKVMLIWLPEKMNVECANKLLKLLEEPP 179 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 K +F+L+S +L TI SR I L E+++ + L + ++ + RD +A Sbjct: 180 LKTVFLLVSEEPDLLLPTIVSRTQRINLKPLPESDIERYLVERYMLPVEDARDIAHRSA- 238 Query: 219 GSVARAIKILH 229 GS+ RA++ +H Sbjct: 239 GSLLRAVENVH 249 >gi|157412485|ref|YP_001483351.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9215] gi|157387060|gb|ABV49765.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9215] Length = 320 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 134/310 (43%), Gaps = 48/310 (15%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 N LF +E+I +L++ + + +F G +G+GK ++ + + Sbjct: 7 NNFLF-NEEINTYLNKIIKNKSFANGYIFYGAEGVGKKQTALQFIKKIFKQSS------- 58 Query: 71 MCNPDPCSPFVKQMASHALHDFLYL------------SYSLNPKTGKWRTVITVDEIRRI 118 P +++ ++ DFL + S L +I + +IR I Sbjct: 59 -----PSDNVEEKITNNNHPDFLIIKPDSLLATKKSKSSDLEKTIKSGSEIIKIAQIRNI 113 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + FL + ++++I +N A+N LLK++EEP + FILI+ +L TI Sbjct: 114 KTFLGQKSINSGKKIVLIVDAHLLNEAASNCLLKTIEEPSNGI-FILITSKLNLLLDTII 172 Query: 179 SRCLSIKFNSLSENNLYKALE------QLKIMGWDSKRDFVKIAAYGS---VARAIKILH 229 SRC ++F S S + E +LKI D + +A GS + + I+I + Sbjct: 173 SRCQIVRFRSFSSKQIKSIFEDYLNTSKLKINTKLKFEDLIN-SANGSPYQLLKNIEIWN 231 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIAD--ELLSQDQKIAFD-FLIEFILKEICKSA 286 D+II+ + +Y L+ +I + +L+S++ +I FL+ FI + Sbjct: 232 DFSDEIIN---------KLDYPLKNNLEILEICQLISEELEIYQQIFLVNFIQTIWWRKL 282 Query: 287 KAAALSGQLE 296 K L +LE Sbjct: 283 KNIRLVKKLE 292 >gi|70727526|ref|YP_254442.1| hypothetical protein SH2527 [Staphylococcus haemolyticus JCSC1435] gi|68448252|dbj|BAE05836.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 308 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L CN + Sbjct: 2 DEQQKLANAYHSNKLSHAYLFEGDDAQSMKHVAMEFAKLIL------------CNGNQQC 49 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 ++ + DF+Y+S N I ++I ++ + ++ G +V +I+ Sbjct: 50 EM--KVGTFNQPDFMYVSSEENS--------IKKEQIEQLVHRMNQLPIEGTHKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP+ + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPENTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|296453338|ref|YP_003660481.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301] gi|296182769|gb|ADG99650.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301] Length = 383 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 18/170 (10%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 L G + + LS+ G++ + L G G G++ + +A L++PD Sbjct: 7 LVGQQPVIDVLSRIAQGDPGQITQSWLICGPPGSGRSNMARAFAA-ALESPDHG------ 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N +P +Q+ + D L+ + + I +D++R I T W Sbjct: 60 MNDEPTR-VTQQVLAGTHPDVTVLATN--------KVTIGIDQVREIITASEQMPATAPW 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 R+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 111 RIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|254773386|ref|ZP_05214902.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium subsp. avium ATCC 25291] Length = 612 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS +GR++HA LF G +G GK + + + +Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C D C +A +A + G VD+ R +R Sbjct: 65 P--TATPCGVC--DSC----LALAPNAPGSIDVVELDAASHGG-------VDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 170 HHYPFRLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 >gi|203284370|ref|YP_002222110.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly] gi|201083813|gb|ACH93404.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly] Length = 555 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 36/287 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L S ++ +A +F G +G+GK + ++ + + P M Sbjct: 26 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFSRCL----NCQTGPTIM-- 79 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC K + + D + + + N +V ++R+I+ + + Sbjct: 80 --PCGTCFNCKSIDNDNSLDVIEIDGASNT---------SVQDVRQIKEEIMFPPANSRY 128 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV +ID V ++ +A NALLK++EEPP ++FI + + TI+SRC F L Sbjct: 129 RVYIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQHFNFRLLPL 188 Query: 192 NNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS-SYIDLIHIP 246 + +Y+ L+ + I D ++ + GSV A + D+I+S S D+ Sbjct: 189 DKIYEMLKCVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLF----DQIVSLSNSDI---- 240 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + + KM +DE L +K+A L + LKE+ L+G Sbjct: 241 KFDQIRSKMGLTSDEFL---EKLALSILND-DLKELLSVLDTVFLTG 283 >gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1] gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1] Length = 753 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 31/207 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LS +GR++HA LF G +G GK T R L Sbjct: 5 RKYRPASFSEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGK-TSSARILARSLN--- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT---------VDE 114 C P S Q S +L P G +T VD+ Sbjct: 61 --------CVEGPTSTPCGQCPS---------CVALGPG-GSGNLDVTELDAASHGGVDD 102 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 R +R +RV ++D + NALLK +EEPP+ ++FI + +L Sbjct: 103 TRELRDRAFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 TIRSR F L+ + LE++ Sbjct: 163 PTIRSRTHHYPFRLLAPATMRGLLEKI 189 >gi|118462751|ref|YP_879667.1| DNA polymerase III subunits gamma/tau [Mycobacterium avium 104] gi|48928138|gb|AAT47747.1| probable DNA polymerase III gamma [Mycobacterium avium] gi|118164038|gb|ABK64935.1| DNA polymerase III gamma/tau subunit [Mycobacterium avium 104] Length = 608 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS +GR++HA LF G +G GK + + + +Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C D C +A +A + G VD+ R +R Sbjct: 65 P--TATPCGVC--DSC----LALAPNAPGSIDVVELDAASHGG-------VDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 170 HHYPFRLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 >gi|167626503|ref|YP_001677003.1| DNA polymerase III subunit delta' [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596504|gb|ABZ86502.1| DNA polymerase III, delta prime subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 302 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V EI++I LTA+ ++I+I+ +D +N +AANALLK+LEEP F++ + Sbjct: 72 IKVSEIKKIIKNCELTAHNNLAKIIIIEELDLLNESAANALLKTLEEPTADTFFLMFTKN 131 Query: 170 SPTILSTIRSRCL--SIKF 186 IL T++SR + IKF Sbjct: 132 YTDILPTVKSRSIVYDIKF 150 >gi|194476906|ref|YP_002049085.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora] gi|171191913|gb|ACB42875.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora] Length = 584 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 13/176 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L G E I LS R+ A LF G +G GK T R L + Sbjct: 12 YRPQRLDQLVGQEAIATTLSNALVYRRIATAYLFSGPRGTGK-TSSARILARSLNCLNSD 70 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C C + + AL D + + + N TG V+ IR + + Sbjct: 71 SPTTEPCGK--CELCISITSGRAL-DVIEIDAASN--TG-------VENIRELIERSKFS 118 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 W+V +ID ++ A NALLK+LEEP K+LFIL + +L+T+ SRC Sbjct: 119 PVQARWKVYVIDECHMLSAAAFNALLKTLEEPQPKLLFILATTDPQRMLTTVISRC 174 >gi|304409048|ref|ZP_07390669.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS183] gi|307303051|ref|ZP_07582806.1| DNA polymerase III, delta prime subunit [Shewanella baltica BA175] gi|304352869|gb|EFM17266.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS183] gi|306913411|gb|EFN43833.1| DNA polymerase III, delta prime subunit [Shewanella baltica BA175] Length = 318 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N AANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCTRLTATAQQSGMRVAIIHHSERLNSAAANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++T+ SRC I F Sbjct: 154 PARLMATVSSRCQRIPF 170 >gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] Length = 902 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 15/195 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ K + S D L + + N +DE+R +R + Sbjct: 68 PTDHPCNECS------ACKSILSGQSMDVLEIDAASN---------RGIDEVRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKAL 198 F ++ +++ + L Sbjct: 173 YTFRRITSDDIAQRL 187 >gi|229153811|ref|ZP_04281942.1| DNA polymerase III, delta prime subunit [Bacillus cereus ATCC 4342] gi|228629615|gb|EEK86311.1| DNA polymerase III, delta prime subunit [Bacillus cereus ATCC 4342] Length = 308 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA L EG +G GK + A L + P +C K++ S H Sbjct: 8 RISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------CKRIDS-GNHP 60 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L++ + P I +I ++ S T +V +I+ D M NAAN LL Sbjct: 61 NLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANTLL 113 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 K LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 114 KFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 161 >gi|158339114|ref|YP_001520291.1| DNA polymerase III, delta prime subunit [Acaryochloris marina MBIC11017] gi|158309355|gb|ABW30972.1| DNA polymerase III, delta prime subunit [Acaryochloris marina MBIC11017] Length = 320 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++L + + R+ A LF G +GIG++ + ++ +L D + R Sbjct: 5 IIGQSAAIEYLQRAISTQRIAPAYLFAGPEGIGRSRVAEQFLSLLL---DPEQTEQRSLR 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT--VITVDEIRRIRYFLSLTANTGYW 131 P S ++ H + + ++ + R+ I + +IR + FLS + Sbjct: 62 NHPDSLWIAPTYKHK-NKLMTVAQMQAQEIALPRSHPQIRLAQIRDMTQFLSQSPLEASR 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I+ + MN AANALLKSLEEP L +L + ++ T+ SRC I F+ L+ Sbjct: 121 LAVVIEGAETMNEAAANALLKSLEEPGNATLILLAPNID-ALIPTLVSRCQRIPFSRLNA 179 Query: 192 NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + L+Q G+ ++ ++ + I H+ IS Sbjct: 180 AQMAQVLDQ---AGYGEILEYPQLIEMAQGSPGCAIAHWHQQDSIS 222 >gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC 73102] gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC 73102] Length = 707 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 17/188 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ + ++ A LF G +G GK + A + L++ + P Sbjct: 17 ELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAKSLNCLKSDRPTAEPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K +AL D + + + N TG VD IR + Sbjct: 77 VC--DVCQGITK---GYAL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 122 YKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181 Query: 191 ENNLYKAL 198 + K L Sbjct: 182 LEAMVKHL 189 >gi|159039918|ref|YP_001539171.1| DNA polymerase III, delta prime subunit [Salinispora arenicola CNS-205] gi|157918753|gb|ABW00181.1| DNA polymerase III, delta prime subunit [Salinispora arenicola CNS-205] Length = 424 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 7/142 (4%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+E+R + + T + G W+V++I+ D + A NALLK++EEPP + +F+L + + Sbjct: 127 IGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFLLCAPS 186 Query: 170 S-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + P +S TIRSRC + + + + L + + D R + AA G V RA ++ Sbjct: 187 THPDDISVTIRSRCRVVPLRQPAPAAVAEVLVRRDGVELDVAR-WAAAAAQGHVGRARRL 245 Query: 228 LHYDCDKIISSYID-LIHIPRQ 248 D + D ++ +PRQ Sbjct: 246 AR---DPEARARRDAVLAVPRQ 264 >gi|331270646|ref|YP_004397138.1| DNA polymerase III subunit delta [Clostridium botulinum BKT015925] gi|329127196|gb|AEB77141.1| DNA polymerase III, delta subunit, putative [Clostridium botulinum BKT015925] Length = 318 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 28/170 (16%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GH+ I++ ++ S + HA L GE GIGK+ + A VL Sbjct: 8 ENIIGHDLIKREINNSIDSRKFSHAHLIVGEDGIGKSLIAREIALKVL------------ 55 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 + D Y+ + + K + I VD IR I ++ Sbjct: 56 ---------------GKIEDRDYVDI-IQWRVEKNKQSIGVDNIRDIIKEVNKKPYEEDK 99 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +VI++ + M A NA LK++EEPP VL IL+S +L TI+SRC Sbjct: 100 KVIIVYEAERMTIEAQNAFLKTIEEPPAGVLIILLSSNLELMLETIKSRC 149 >gi|116617405|ref|YP_817776.1| DNA polymerase III, gamma/tau subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096252|gb|ABJ61403.1| DNA polymerase III, gamma/tau subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 575 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 33/191 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD + Q++ I + L + + HA LF G +G GK + +A V Sbjct: 15 RSFDDMVGQKI-----ITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFAREV----- 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + + D + + + N G VDEIR IR + Sbjct: 65 --------------NGIAPETDDSQIPDIIEIDAASN--NG-------VDEIRNIRDGAN 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID V ++ A NALLK+LEEPP V FIL + I +TI SR Sbjct: 102 YAPIESEYKIYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQR 161 Query: 184 IKFNSLSENNL 194 +F + + + Sbjct: 162 FEFKRIDNDTI 172 >gi|148927687|ref|ZP_01811136.1| DNA polymerase III, subunits gamma and tau [candidate division TM7 genomosp. GTL1] gi|147886962|gb|EDK72483.1| DNA polymerase III, subunits gamma and tau [candidate division TM7 genomosp. GTL1] Length = 454 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 33/191 (17%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + I L + R+ HA LF G +G GK + Sbjct: 16 EVVGQKHITDVLLKALQHKRIGHAFLFTGPRGTGKTS----------------------- 52 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT--VDEIRRIRYFLSLTANTGY 130 + ++ +HA++D Y + SL+ + +D+IR +R + + + Sbjct: 53 --------IARILAHAINDLPYENDSLHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAP 104 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V + + NALLK+LEEPP V+FIL + + + +TI SR F + Sbjct: 105 FKVYIIDEVHMLTGESFNALLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIP 164 Query: 191 ENNLYKALEQL 201 E + K L + Sbjct: 165 EAEVAKHLSHI 175 >gi|217973070|ref|YP_002357821.1| DNA polymerase III subunit delta' [Shewanella baltica OS223] gi|217498205|gb|ACK46398.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS223] Length = 318 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N AANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCTRLTATAQQSGMRVAIIHHSERLNSAAANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++T+ SRC I F Sbjct: 154 PARLMATVSSRCQRIPF 170 >gi|27262454|gb|AAN87508.1| DNA polymerase III subunit gamma/tau [Heliobacillus mobilis] Length = 106 Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 42/70 (60%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VDEIR +R + G ++V +ID V + A NALLK+LEEPP V+F+L + Sbjct: 35 VDEIRELREQVKYAPQEGTYKVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVH 94 Query: 172 TILSTIRSRC 181 I +TI SRC Sbjct: 95 KIPATILSRC 104 >gi|300776814|ref|ZP_07086672.1| probable DNA polymerase III delta prime subunit [Chryseobacterium gleum ATCC 35910] gi|300502324|gb|EFK33464.1| probable DNA polymerase III delta prime subunit [Chryseobacterium gleum ATCC 35910] Length = 372 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 19/236 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVR 70 + + G +++K L + R+ HA LF G++G G + YA + Q + + A V Sbjct: 4 ENIAGQTNLKKLLRESIAENRVSHAQLFVGKEGYGILPMVLAYAREIFSQENEHAAAKVE 63 Query: 71 MCN-----------PDPCSPFVKQMASHALHDFL------YLSYSLNPKTGKWRTVITVD 113 N D + K L Y ++ ++ + I+ D Sbjct: 64 HLNHLDLHFSFPVFTDNKNSLSKNKFDEFREMILSSPYASYDDWTAFLESENKQLFISAD 123 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 EI SL + G +++++ D MN A+N LK LEEPP K + +L + ++ I Sbjct: 124 EIDDQNQKFSLKSFEGGTKILIVWRADKMNVAASNKFLKFLEEPPAKTVILLTAESTNDI 183 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L TI SR ++ + + ++ L++ + + R+ V A G + AIK+L+ Sbjct: 184 LPTILSRTQIVEIPRIHDEDIENYLKKNFSVSDEKVREIVH-EAQGDLNEAIKLLN 238 >gi|47570435|ref|ZP_00241071.1| DNA polymerase III, delta prime subunit [Bacillus cereus G9241] gi|47552893|gb|EAL11308.1| DNA polymerase III, delta prime subunit [Bacillus cereus G9241] Length = 310 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA L EG +G GK + A L + P +C K++ S H Sbjct: 10 RISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------CKRIDS-GNHP 62 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L++ + P I +I ++ S T +V +I+ D M NAAN LL Sbjct: 63 NLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANTLL 115 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 K LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 116 KFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 163 >gi|228931534|ref|ZP_04094441.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828086|gb|EEM73813.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 327 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|30018303|ref|NP_829934.1| DNA polymerase III subunit delta' [Bacillus cereus ATCC 14579] gi|218231662|ref|YP_002364881.1| DNA polymerase III subunit delta' [Bacillus cereus B4264] gi|229107718|ref|ZP_04237355.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-15] gi|229125549|ref|ZP_04254582.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-Cer4] gi|229142837|ref|ZP_04271280.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST24] gi|229148441|ref|ZP_04276698.1| DNA polymerase III, delta prime subunit [Bacillus cereus m1550] gi|296500864|ref|YP_003662564.1| DNA polymerase III subunit delta' [Bacillus thuringiensis BMB171] gi|29893843|gb|AAP07135.1| DNA polymerase III, delta' subunit [Bacillus cereus ATCC 14579] gi|218159619|gb|ACK59611.1| DNA polymerase III, delta prime subunit [Bacillus cereus B4264] gi|228634983|gb|EEK91555.1| DNA polymerase III, delta prime subunit [Bacillus cereus m1550] gi|228640600|gb|EEK96987.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST24] gi|228657866|gb|EEL13671.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-Cer4] gi|228675691|gb|EEL30898.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-15] gi|296321916|gb|ADH04844.1| DNA polymerase III subunit delta' [Bacillus thuringiensis BMB171] Length = 327 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSERNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKIYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|52145184|ref|YP_081644.1| DNA polymerase III subunit delta' [Bacillus cereus E33L] gi|51978653|gb|AAU20203.1| DNA polymerase III, delta prime subunit [Bacillus cereus E33L] Length = 327 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNRVEPCHICTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|203287904|ref|YP_002222919.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis A1] gi|201085124|gb|ACH94698.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis A1] Length = 555 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L S ++ +A +F G +G+GK + ++ + + P M Sbjct: 26 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFSRCL----NCQTGPTIM-- 79 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PC K + + D + + + N +V ++R+I+ + + Sbjct: 80 --PCGTCFNCKSIDNDNSLDVIEIDGASNT---------SVQDVRQIKEEIMFPPANSRY 128 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 RV +ID V ++ +A NALLK++EEPP ++FI + + TI+SRC F L Sbjct: 129 RVYIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQHFNFRLLPL 188 Query: 192 NNLYKALE 199 + +Y+ L+ Sbjct: 189 DKIYEMLK 196 >gi|311741093|ref|ZP_07714918.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium pseudogenitalium ATCC 33035] gi|311303895|gb|EFQ79973.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium pseudogenitalium ATCC 33035] Length = 787 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 17/229 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS +GR++HA LF G +G GK + A + Sbjct: 5 RKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +A + G V+++R +R Sbjct: 65 PTSTPCGKC--DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAY 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +R+ +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR Sbjct: 112 YAPAESRYRIFIIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHH 171 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L+ L + +E + D+ V A GS + +L Sbjct: 172 YPFRLLTPPAMKGLLQRTVESEGVQVEDAVYPMVIEAGGGSPRDTLSLL 220 >gi|227542728|ref|ZP_03972777.1| DNA polymerase III subunits gamma and tau [Corynebacterium glucuronolyticum ATCC 51866] gi|227181494|gb|EEI62466.1| DNA polymerase III subunits gamma and tau [Corynebacterium glucuronolyticum ATCC 51866] Length = 796 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 13/185 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E + + LS SG + HA LF G +G GK + A + + Sbjct: 7 YRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNCEHGPT 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + D L + + +VD++R +R Sbjct: 67 STPCGEC--DSCRALAPGGTGNL--DVTELDAASH---------GSVDDMRELRESAVFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +R+ +ID + ANALLK +EEPP+ ++FI + I+ TIRSR Sbjct: 114 PSESRYRIFIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYP 173 Query: 186 FNSLS 190 F L+ Sbjct: 174 FRLLT 178 >gi|222093801|ref|YP_002527850.1| DNA polymerase iii subunit delta' [Bacillus cereus Q1] gi|221237848|gb|ACM10558.1| DNA polymerase III, delta prime subunit [Bacillus cereus Q1] Length = 310 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA L EG +G GK + A L + P +C K++ S H Sbjct: 10 RISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------CKRIDS-GNHP 62 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L++ + P I +I ++ S T +V +I+ D M NAAN LL Sbjct: 63 NLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADRMTANAANTLL 115 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 K LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 116 KFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 163 >gi|160875683|ref|YP_001554999.1| DNA polymerase III subunit delta' [Shewanella baltica OS195] gi|160861205|gb|ABX49739.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS195] gi|315267872|gb|ADT94725.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS678] Length = 318 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N AANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCTRLTATAQQSGMRVAIIHHSERLNSAAANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++T+ SRC I F Sbjct: 154 PARLMATVSSRCQRIPF 170 >gi|227874530|ref|ZP_03992696.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227839626|gb|EEJ50090.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 526 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 21/176 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 L G + I + R+ HA LF G +G GK ++ A V NP Sbjct: 18 LVGQDAITRSFKNQVSHDRIGHAYLFCGTRGTGKTSMAKILARAVNCLNPK--------- 68 Query: 73 NPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + +PC+ K + S+ + + + N K VD+IR IR + Sbjct: 69 DGNPCNECANCKAILSNTSINVYEMDAASNNK---------VDDIRLIREQVEYPPVGMR 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V +ID V + +A NA LK+LEEPP+ +FIL + + TI SRC F Sbjct: 120 YKVYIIDEVHMLTESAHNAFLKTLEEPPEYAIFILATTEPNALPITILSRCQRYDF 175 >gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM 2008] gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM 2008] Length = 895 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 19/229 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCEHG 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C+ + + S D L + + N +DE+R +R + Sbjct: 68 PTDHPCNECS------ACRSILSGQSMDVLEIDAASN---------RGIDEVRALRESVK 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 113 FMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQR 172 Query: 184 IKFNSLSENNLYKALEQL-KIMGWD---SKRDFVKIAAYGSVARAIKIL 228 F ++ +++ + L + + G+D + + + A G + A+ IL Sbjct: 173 YTFRRITSDDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSIL 221 >gi|49480023|ref|YP_034385.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118475803|ref|YP_892954.1| DNA polymerase III subunit delta' [Bacillus thuringiensis str. Al Hakam] gi|196036396|ref|ZP_03103793.1| DNA polymerase III, delta prime subunit [Bacillus cereus W] gi|196041785|ref|ZP_03109075.1| DNA polymerase III, delta prime subunit [Bacillus cereus NVH0597-99] gi|196047391|ref|ZP_03114604.1| DNA polymerase III, delta prime subunit [Bacillus cereus 03BB108] gi|218901232|ref|YP_002449066.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH820] gi|225862083|ref|YP_002747461.1| DNA polymerase III, delta prime subunit [Bacillus cereus 03BB102] gi|228912771|ref|ZP_04076419.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925285|ref|ZP_04088382.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228943838|ref|ZP_04106224.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089164|ref|ZP_04220446.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-42] gi|229119694|ref|ZP_04248956.1| DNA polymerase III, delta prime subunit [Bacillus cereus 95/8201] gi|229182426|ref|ZP_04309678.1| DNA polymerase III, delta prime subunit [Bacillus cereus BGSC 6E1] gi|254724172|ref|ZP_05185957.1| DNA polymerase III subunit delta' [Bacillus anthracis str. A1055] gi|49331579|gb|AAT62225.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415028|gb|ABK83447.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis str. Al Hakam] gi|195991026|gb|EDX54997.1| DNA polymerase III, delta prime subunit [Bacillus cereus W] gi|196021793|gb|EDX60487.1| DNA polymerase III, delta prime subunit [Bacillus cereus 03BB108] gi|196027405|gb|EDX66022.1| DNA polymerase III, delta prime subunit [Bacillus cereus NVH0597-99] gi|218539234|gb|ACK91632.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH820] gi|225790912|gb|ACO31129.1| DNA polymerase III, delta prime subunit [Bacillus cereus 03BB102] gi|228601006|gb|EEK58574.1| DNA polymerase III, delta prime subunit [Bacillus cereus BGSC 6E1] gi|228663719|gb|EEL19297.1| DNA polymerase III, delta prime subunit [Bacillus cereus 95/8201] gi|228694127|gb|EEL47808.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock3-42] gi|228815795|gb|EEM62030.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834332|gb|EEM79872.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846831|gb|EEM91835.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 327 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|186686450|ref|YP_001869646.1| DNA polymerase III subunit delta' [Nostoc punctiforme PCC 73102] gi|186468902|gb|ACC84703.1| DNA polymerase III, delta prime subunit [Nostoc punctiforme PCC 73102] Length = 315 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 8/192 (4%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS-----KAP 68 L G + L+Q R+ A LF G G+G+ +L R +L + + + Sbjct: 9 LVGQPQAIELLTQAVRQNRVAPAYLFVGPDGVGR-SLAARCFVELLFSSELGVTAALQNR 67 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 +R N P +V+ + + K VI +++IR I FLS Sbjct: 68 LRQGN-HPALLWVQPTYQYQGQRLTAAEAAEKGLKRKAPPVIRLEQIREITEFLSRPPLE 126 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 V++++ M AANALLK+LEEP Q L ILI+ ++L T+ SRC I F Sbjct: 127 APRNVVVLEEAQTMAEAAANALLKTLEEPGQATL-ILIAPTPESVLPTLVSRCQRIPFYR 185 Query: 189 LSENNLYKALEQ 200 L +L L Q Sbjct: 186 LDAQSLAVVLTQ 197 >gi|312194211|ref|YP_004014272.1| AAA ATPase [Frankia sp. EuI1c] gi|311225547|gb|ADP78402.1| AAA ATPase central domain protein [Frankia sp. EuI1c] Length = 418 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + V ++R + + +G +R+++I+ D + +AANALLK+LEEP Q+ +F+L + + Sbjct: 107 LGVQDVRALVRDAASAPTSGRYRILLIEEADRLTDSAANALLKALEEPAQRSVFLLCAPS 166 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++ TIRSRC + + ++L AL + Sbjct: 167 VDDVMPTIRSRCRVVALRLPTVDDLVGALRR 197 >gi|269114869|ref|YP_003302632.1| DNA polymerase III subunit gamma and tau [Mycoplasma hominis] gi|268322494|emb|CAX37229.1| DNA polymerase III subunit gamma and tau [Mycoplasma hominis ATCC 23114] Length = 667 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 132/307 (42%), Gaps = 53/307 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G + I L + ++ HA LF G G GK + +A + L N Sbjct: 12 RKYRPKIFDDIKGQDHIVITLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHN 71 Query: 62 -PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K PC +K + + D + + + N TG +D+IR ++ Sbjct: 72 QSDILK---------PCEECIKNVDRNL--DIIEIDAASN--TG-------IDDIRELKE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V +++ A NALLK++E+PP ++FIL + I TI SR Sbjct: 112 KIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSR 171 Query: 181 CLSIKFNSLS--------------ENNLYK--ALEQLKIMGWDSKRDFVKIAAYGSVARA 224 F ++ EN Y+ A+ + +G S RD + IA + ++ A Sbjct: 172 VQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCA 231 Query: 225 IKILHYDCDKIISSYIDLIHIPRQ--------EYALQKMQQIADELLSQ--DQKIAFDFL 274 K++ + ++ +++I + + + K +A EL SQ D I + L Sbjct: 232 NKVIKKE---VVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDL 288 Query: 275 IEFILKE 281 I ILKE Sbjct: 289 IN-ILKE 294 >gi|239943105|ref|ZP_04695042.1| DNA polymerase III subunit delta' [Streptomyces roseosporus NRRL 15998] gi|239989563|ref|ZP_04710227.1| DNA polymerase III subunit delta' [Streptomyces roseosporus NRRL 11379] gi|291446582|ref|ZP_06585972.1| DNA polymerase III subunit delta [Streptomyces roseosporus NRRL 15998] gi|291349529|gb|EFE76433.1| DNA polymerase III subunit delta [Streptomyces roseosporus NRRL 15998] Length = 401 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHAL 89 +M HA LF G G G++T +A + +PD + C D C + +HA Sbjct: 42 KMTHAWLFTGPPGSGRSTAARAFAAALQCTSPDRALGGAPGCGFCDGC--HTSLVGTHA- 98 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + L I V E R + L+ G W+VI+++ D + A N Sbjct: 99 -DVEVIRTDL--------LSIGVKETRDLVRRAQLSPAVGRWQVIVMEDADRLTEGAGNV 149 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 LLK++EEP + +++L + + +L TIRSRC + ++ Sbjct: 150 LLKAVEEPAPRTVWMLCAPSLEDVLPTIRSRCRHLTLST 188 >gi|321309586|ref|YP_004191915.1| DNA polymerase III subunits gamma and tau [Mycoplasma haemofelis str. Langford 1] gi|319801430|emb|CBY92076.1| DNA polymerase III subunits gamma and tau [Mycoplasma haemofelis str. Langford 1] Length = 552 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 14/181 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I+ + Q + ++ + +F G G GK ++ R P F K +CN Sbjct: 18 LIGQETIKNQIRQIFTQNKLLQSFIFYGLHGTGKTSVA-RIFSKAWNCPKF-KELGDVCN 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + Q + +++ S S V+ IR + + A +V Sbjct: 76 ECESCKLIDQNRTTDIYEIDAASNS------------GVENIRDVIHNTQYVALNLKKKV 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID ++ +A NALLK++EEP V+F+ ++ I TI SRC FN LS+ + Sbjct: 124 YIIDEAHNLSNSAWNALLKTIEEPSGHVIFLFLTTNIQKIPDTIISRCHKYNFNYLSKED 183 Query: 194 L 194 L Sbjct: 184 L 184 >gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] Length = 617 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 18/236 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G + L + SGR+ + G +G+GK T R L Sbjct: 26 VLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGYMLTGVRGVGKTTTA-RILARALN 84 Query: 60 -QNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + PD + D V K + D L + + N TG VD IR Sbjct: 85 YEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASN--TG-------VDNIR 135 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I T +V +ID V +++ A NALLK+LEEPP V FI + + T Sbjct: 136 EIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVPVT 195 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKIL 228 + SRC + + L +++ + G ++ D +++ AA GSV + IL Sbjct: 196 VLSRCQRFDLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSIL 251 >gi|172041592|ref|YP_001801306.1| DNA polymerase III subunits gamma and tau [Corynebacterium urealyticum DSM 7109] gi|171852896|emb|CAQ05872.1| DNA polymerase III, gamma and tau subunits [Corynebacterium urealyticum DSM 7109] Length = 1102 Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 17/193 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G E + + LS SGR++HA LF G +G GK + A + ++ Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C SL+ + VD++R +R Sbjct: 65 P--TSTPCGKC--DSCIALAPGGPG-----------SLDVTELDAASHRGVDDMRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + N LLK +EEPP+ ++FI + +L+TIRSR Sbjct: 110 AFYAPADSRYRVFIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRT 169 Query: 182 LSIKFNSLSENNL 194 + F L+ ++ Sbjct: 170 HNYPFRLLTPPDM 182 >gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62] gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62] Length = 585 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNP 62 R + P L G + + + L + + R+ A + G +G GK T A G P Sbjct: 14 RKYRPETFVDLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGP 73 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P DPC A + +TG V +IR I + Sbjct: 74 DGNGGPTT----DPCGTCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREIIDSV 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A + +++ +ID V +++NA NALLK+LEEPP V FI + + T+ SRC Sbjct: 123 HYRAASARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLSRC 181 >gi|269837957|ref|YP_003320185.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] Length = 589 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 R+F P G E I + L R+ HA LF G +G GK + A V P Sbjct: 25 RSFAP---GEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKAVNCLAP 81 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D P C + + + D + + + N VD+IR +R + Sbjct: 82 DPEARPCNACE------ACEAINAGTAVDIIEIDAASN---------RGVDDIRDLREKV 126 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +ID + R+A NA LK+LEEPP V F+L + + TI SRC Sbjct: 127 KYAPTQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQ 186 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F + +++ + L E+ + D + A GS+ A+ +L Sbjct: 187 RFDFRRFALSDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLE 237 >gi|169627413|ref|YP_001701062.1| DNA polymerase III, subunit gamma/tau [Mycobacterium abscessus ATCC 19977] gi|169239380|emb|CAM60408.1| DNA polymerase III, subunit gamma/tau [Mycobacterium abscessus] Length = 679 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E + L+ +GR++HA LF G +G GK + A + +Q Sbjct: 21 RKYRPATFAEVVGQEHVTGPLTTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 80 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + C + + D + L + + VD+ R +R Sbjct: 81 P--TSTPCGTC--ESCVALAPNGSGNV--DVIELDAASHGG---------VDDTRELRDR 125 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +R+ +ID + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 126 AFYAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRT 185 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L+ + +E + Sbjct: 186 HHYPFRLLAPKTMRTLVEGI 205 >gi|326777707|ref|ZP_08236972.1| DNA polymerase III, delta prime subunit [Streptomyces cf. griseus XylebKG-1] gi|326658040|gb|EGE42886.1| DNA polymerase III, delta prime subunit [Streptomyces cf. griseus XylebKG-1] Length = 401 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHAL 89 +M HA LF G G G++T +A + +PD + C D C + +HA Sbjct: 42 KMTHAWLFTGPPGSGRSTAARAFAAALQCTSPDRALGGAPGCGFCDGC--HTSLIGTHA- 98 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + L I V E R + L+ G W+VI+++ D + A N Sbjct: 99 -DVEVIRTDL--------LSIGVKETRDLVRRAQLSPAVGRWQVIVMEDADRLTEGAGNV 149 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 LLK++EEP + +++L + + +L TIRSRC + ++ Sbjct: 150 LLKAVEEPAPRTVWMLCAPSLEDVLPTIRSRCRHLTLST 188 >gi|255324356|ref|ZP_05365475.1| DNA polymerase III subunit gamma/tau [Corynebacterium tuberculostearicum SK141] gi|255298575|gb|EET77873.1| DNA polymerase III subunit gamma/tau [Corynebacterium tuberculostearicum SK141] Length = 791 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 17/229 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS +GR++HA LF G +G GK + A + Sbjct: 5 RKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C +A + G V+++R +R Sbjct: 65 PTSTPCGKC--DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAY 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +R+ +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR Sbjct: 112 YAPAESRYRIFIIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHH 171 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L+ L + +E + D+ V A GS + +L Sbjct: 172 YPFRLLTPPAMKGLLQRTVESEGVQVEDAVYPMVIEAGGGSPRDTLSLL 220 >gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4] gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4] Length = 747 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS +GR++HA LF G +G GK + + + ++ Sbjct: 5 RKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C P + + G VD+ R +R Sbjct: 65 P--TSTPCGSC------PSCVALGPGGSGNLDVTELDAASHGG-------VDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL 201 F L+ + LE++ Sbjct: 170 HHYPFRLLAPTTMRGLLEKI 189 >gi|218895167|ref|YP_002443578.1| DNA polymerase III, delta prime subunit [Bacillus cereus G9842] gi|228898785|ref|ZP_04063068.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis IBL 4222] gi|228937334|ref|ZP_04099981.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963129|ref|ZP_04124299.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228970220|ref|ZP_04130880.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976790|ref|ZP_04137203.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis Bt407] gi|218543708|gb|ACK96102.1| DNA polymerase III, delta prime subunit [Bacillus cereus G9842] gi|228782886|gb|EEM31051.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis Bt407] gi|228789455|gb|EEM37374.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796514|gb|EEM43952.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228822292|gb|EEM68273.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228860810|gb|EEN05187.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis IBL 4222] gi|326937823|gb|AEA13719.1| DNA polymerase III subunit delta' [Bacillus thuringiensis serovar chinensis CT-43] Length = 327 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 14/179 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKLYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L++ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQE 181 >gi|309811747|ref|ZP_07705524.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp. Ellin185] gi|308434293|gb|EFP58148.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp. Ellin185] Length = 893 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 27/232 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G E + + L Q +GR++HA LF G +G GK T R L Q P + P Sbjct: 27 VIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTS-ARILARCLNCEQGP--TPTPCG 83 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C + A D + + + + VD+ R +R S + Sbjct: 84 VC--DSCVALARGGAGSV--DVIEIDAASH---------GGVDDARDLRERASFGPASSR 130 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR F + Sbjct: 131 YKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSRTHHYPFRLVP 190 Query: 191 ENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISS 238 L +E L + + ++ FV A GSV ++ +L D++I+ Sbjct: 191 PKKLSDYMETLLDAEGVAYEPGVLSFVTRAGGGSVRDSLSVL----DQLIAG 238 >gi|126174671|ref|YP_001050820.1| DNA polymerase III subunit delta' [Shewanella baltica OS155] gi|125997876|gb|ABN61951.1| DNA polymerase III, delta prime subunit [Shewanella baltica OS155] Length = 318 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N AANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCTRLTATAQQSGMRVAIIHHSERLNSAAANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++T+ SRC I F Sbjct: 154 PARLMATVGSRCQRIPF 170 >gi|304397226|ref|ZP_07379105.1| DNA polymerase III, delta prime subunit [Pantoea sp. aB] gi|304355375|gb|EFM19743.1| DNA polymerase III, delta prime subunit [Pantoea sp. aB] Length = 330 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R HHAL+ + G+G L + + ++ Q D K+ C+ + M ++ Sbjct: 23 RAHHALMIQAMAGMGDEALVWGMSRWLMCQQRDGLKS-CGECH------GCQLMQANTHP 75 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D+ Y L + GK + + +D +R++ + G +V+ + ++ AANAL Sbjct: 76 DW----YRLEAEKGK--STLGIDAVRQVTEKMYHFGQQGGAKVVWLPDAAQLSEAAANAL 129 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 LK+LEEPP F L S +L+T+RSRC+++ E Sbjct: 130 LKTLEEPPANSWFFLSSRDPSRLLATLRSRCMTLHLTPPDEGQ 172 >gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] Length = 537 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 6 RKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAI----- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMAS--HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ +S + D + + + N + +D+IR +R Sbjct: 61 ---NCLDLQDGNPCNKCENCQSSLEESTLDIVEMDAASNRR---------IDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F ++ +N+ L L D + + A G++ A+ IL Sbjct: 169 QRYEFKMINSKDISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSIL 219 >gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC 53516] gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC 53516] Length = 538 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 6 RKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAI----- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMAS--HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + + +PC+ ++S + D + + + N + +D+IR +R Sbjct: 61 ---NCLDLQDGNPCNKCENCLSSLEESTLDIVEMDAASNRR---------IDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +F ++ +N+ L L D + A G++ A+ IL Sbjct: 169 QRYEFKMINAKDISDNIKYILNDLNRKMDDDAIKLIANKADGAMRDALSIL 219 >gi|315446272|ref|YP_004079151.1| DNA polymerase III delta prime subunit [Mycobacterium sp. Spyr1] gi|315264575|gb|ADU01317.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. Spyr1] Length = 403 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 17/171 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A LQ + C C MA Sbjct: 38 TGTMTHAWLITGPPGSGRSIAALCFAA-ALQCTSEGRP---GCGE--CRACTTTMAGTHA 91 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VD +R I S TG W++++++ D + AANA Sbjct: 92 DVRRIIPEGLS---------IGVDAMRAIVQIASRRPGTGRWQIVVVEDADRLTEGAANA 142 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LLK +EEPP +F+L + + I T+RSRC + + + + + L Sbjct: 143 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVALVTPPADAIAQVL 193 >gi|293396569|ref|ZP_06640845.1| DNA-directed DNA polymerase III subunit delta' [Serratia odorifera DSM 4582] gi|291420833|gb|EFE94086.1| DNA-directed DNA polymerase III subunit delta' [Serratia odorifera DSM 4582] Length = 335 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + L P+ GK + + ++ IR++ L A G +V+ + + + AANALLK+LEE Sbjct: 77 HVLAPEKGK--SSLGIEPIRQVIETLYSHAQQGGAKVVWLAQAEALTEAAANALLKTLEE 134 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 PP F+L +L+T+RSRC NS E Sbjct: 135 PPANTYFLLGCREPSRLLATLRSRCFYWHLNSPDE 169 >gi|182437092|ref|YP_001824811.1| DNA polymerase III subunit delta' [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465608|dbj|BAG20128.1| putative DNA polymerase III [Streptomyces griseus subsp. griseus NBRC 13350] Length = 401 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHAL 89 +M HA LF G G G++T +A + +PD + C D C + +HA Sbjct: 42 KMTHAWLFTGPPGSGRSTAARAFAAALQCTSPDRALGGAPGCGFCDGC--HTSLIGTHA- 98 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + L I V E R + L+ G W+VI+++ D + A N Sbjct: 99 -DVEIIRTDL--------LSIGVKETRDLVRRAQLSPAVGRWQVIVMEDADRLTEGAGNV 149 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 LLK++EEP + +++L + + +L TIRSRC + ++ Sbjct: 150 LLKAVEEPAPRTVWMLCAPSLEDVLPTIRSRCRHLTLST 188 >gi|219681712|ref|YP_002468098.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682267|ref|YP_002468651.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471410|ref|ZP_05635409.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219622000|gb|ACL30156.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624555|gb|ACL30710.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086091|gb|ADP66173.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086665|gb|ADP66746.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087249|gb|ADP67329.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087768|gb|ADP67847.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 326 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 13/157 (8%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 Q Y + HHA+L + +GIG + L + + +L P+ + + D C K M+ Sbjct: 16 QQYQKKKAHHAILIKTPRGIGVSLLIWFISKWLL-----CLKPIGLNSCDKCHG-CKLMS 69 Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 ++ D+ + N + +++ +R I + + G ++I + + + Sbjct: 70 ANNHPDWHNFTLEKN-------NLFSIESVRIINEKIFTCSRQGGSKIIFLSDTGKLTES 122 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NA LK+LEEPP+K F L+++ + ST+ SRCL Sbjct: 123 AINAFLKTLEEPPRKTWFFLVNYKNLNSHSTLNSRCL 159 >gi|116495709|ref|YP_807443.1| DNA replication ATPase [Lactobacillus casei ATCC 334] gi|191639197|ref|YP_001988363.1| DNA-directed DNA polymerase III, delta prime subunit [Lactobacillus casei BL23] gi|227533732|ref|ZP_03963781.1| possible DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105859|gb|ABJ71001.1| DNA polymerase III, delta prime subunit [Lactobacillus casei ATCC 334] gi|190713499|emb|CAQ67505.1| DNA-directed DNA polymerase III, delta prime subunit [Lactobacillus casei BL23] gi|227188716|gb|EEI68783.1| possible DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383273|gb|AEA54749.1| DNA polymerase III gamma subunit [Lactobacillus casei LC2W] gi|327386457|gb|AEA57931.1| DNA polymerase III gamma subunit [Lactobacillus casei BD-II] Length = 325 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 25 QLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQC------PECERILNHNHPD 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 79 VMVVKTETQS--------IKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSLL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + + +L TI SR I F S + + LE+ G S+ Sbjct: 131 KFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLEE---GGATSQMA 187 Query: 212 FVKIAAYGSVARAIKIL 228 V G+VA A +L Sbjct: 188 RVAGRLTGNVADAQALL 204 >gi|149072106|ref|YP_001293483.1| DNA polymerase III [Rhodomonas salina] gi|134303057|gb|ABO70861.1| DNA polymerase III [Rhodomonas salina] gi|159906342|gb|ABX10862.1| DNA polymerase III gamma and tau subunits [Rhodomonas baltica] Length = 370 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 24/221 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G +L + ++ A LF G+ G GK TL R + P +C Sbjct: 20 IIGQNSATNYLQLAIAAKKITFAYLFVGQHGSGKTTLA-RVMAKAINCTSSKNTPCNVC- 77 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + C + H F + TG ++ IR I + + ++V Sbjct: 78 -ENC------VNIHLGRSFDFYEIDAAKNTG-------IENIREIIEKVQYSPIMSKYKV 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID ++ NA N+LLK+LE PP +FIL + A I +TI SRC + F + +++ Sbjct: 124 CIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDHD 183 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L + E+L+I + +KI GS A+ I+ Sbjct: 184 LIIGITKVVYNEKLRITN-KGIENLIKITK-GSFRDALNIV 222 >gi|307328803|ref|ZP_07607973.1| DNA polymerase III, subunits gamma and tau [Streptomyces violaceusniger Tu 4113] gi|306885468|gb|EFN16484.1| DNA polymerase III, subunits gamma and tau [Streptomyces violaceusniger Tu 4113] Length = 473 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 38 RRYRPETFAEVIGQEHVTGPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 93 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P PC + +A + + G VD+ R +R Sbjct: 94 CEKGP----TPAPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 142 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPPQ + FI + ++ TIRSR Sbjct: 143 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPQHLKFIFATTEPEKVIGTIRSRT 202 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L ++ I D V A GSV ++ ++ D++++ Sbjct: 203 HHYPFRLVPPGTLREYLGEVCGREAIPVEDGVLPLVVRAGAGSVRDSMSVM----DQLLA 258 Query: 238 SYID 241 D Sbjct: 259 GAAD 262 >gi|237756415|ref|ZP_04584957.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691431|gb|EEP60497.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 214 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR FLSL + G +V++I+ + +N +ANALLK+LEEPP L IL + + Sbjct: 1 QIREAISFLSLKSLKG--KVLIIEKAENLNTESANALLKTLEEPPSNTLIILTTSNQNQL 58 Query: 174 LSTIRSRCLSIKFNSLSENNLYKAL 198 L TI SR I+F LS ++ L Sbjct: 59 LPTIVSRLKKIRFRKLSHQDVVDIL 83 >gi|283455191|ref|YP_003359755.1| DNA polymerase III subunit delta prime subunit [Bifidobacterium dentium Bd1] gi|283101825|gb|ADB08931.1| DNA polymerase III subunit delta prime subunit [Bifidobacterium dentium Bd1] Length = 383 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 14 LFGHEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G + + L C + + L G G G++ + +A L++PD Sbjct: 7 IVGQRQVVEQLKTVSCGDPKSIAQSWLICGPPGSGRSNVARAFAA-ALESPDHGLG---- 61 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D + +Q+ + D L+ + + I +D++R + +T W Sbjct: 62 ---DEPTKVTQQVLAGTHPDVTVLATN--------KVTIGIDQVRDLITTSEQMPSTAPW 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR + S Sbjct: 111 RIIIIEDVDRMLERTTNVLLKEIEEPSEHAIWLLCAPSAQDVLPTIRSRTRIVNLAVPSN 170 Query: 192 NNLYKALEQ 200 + K LE+ Sbjct: 171 QAVAKFLEE 179 >gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales bacterium HTCC2083] gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae bacterium HTCC2083] Length = 583 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 12/199 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNP 62 R + P L G E + + L + + R+ A + G +G GK T A G P Sbjct: 14 RKYRPETFADLVGQEAMVRTLKNAFEADRIAQAFVMTGIRGTGKTTTARIIAKGINCIGP 73 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P +PC +A + +TG V +IR I + Sbjct: 74 DGTGGP----TTEPCGVCENCVAIMEGRHVDVMEMDAASRTG-------VGDIREIIESV 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ SRC Sbjct: 123 HYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ 182 Query: 183 SIKFNSLSENNLYKALEQL 201 + ++ L+++ Sbjct: 183 RFDLRRIEPEDMIGMLQRI 201 >gi|301067263|ref|YP_003789286.1| DNA replication ATPase [Lactobacillus casei str. Zhang] gi|300439670|gb|ADK19436.1| DNA replication ATPase [Lactobacillus casei str. Zhang] Length = 325 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 25 QLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQC------PECERILNHNHPD 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 79 VMVVKTETQS--------IKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSLL 130 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + + +L TI SR I F S + + LE+ G S+ Sbjct: 131 KFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLEE---GGATSQMA 187 Query: 212 FVKIAAYGSVARAIKIL 228 V G+VA A +L Sbjct: 188 RVAGRLTGNVADAQALL 204 >gi|149182684|ref|ZP_01861151.1| DNA polymerase III subunit delta' [Bacillus sp. SG-1] gi|148849594|gb|EDL63777.1| DNA polymerase III subunit delta' [Bacillus sp. SG-1] Length = 327 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + L+ R+ HA LFEGE+G K + +A +L + PV D C+ Sbjct: 15 QMLANSIKRDRVAHAYLFEGERGTRKKEIAILFAKSLL-----CEHPVNGIACDQCNN-C 68 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ + D + + P I D+I+ ++ S T ++ ++ D Sbjct: 69 KRINNKNHPDV----HIIEPDG----LSIKKDQIKALQSEFSKTGVESKRKIYILSHADK 120 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 M NAAN+LLK LEEP + IL++ IL TI SRC + F L Sbjct: 121 MTPNAANSLLKFLEEPSSETAAILMTEQVHRILPTIMSRCQVVSFQPL 168 >gi|229136876|ref|ZP_04265504.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST26] gi|228646541|gb|EEL02747.1| DNA polymerase III, delta prime subunit [Bacillus cereus BDRD-ST26] Length = 252 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|170768020|ref|ZP_02902473.1| DNA polymerase III, delta' subunit [Escherichia albertii TW07627] gi|170122786|gb|EDS91717.1| DNA polymerase III, delta' subunit [Escherichia albertii TW07627] Length = 334 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 19/166 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + +L Q P K+ R C Sbjct: 10 DFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRFLLCQQPQGHKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK + +D +R + L+ A G +V+ Sbjct: 67 -----LMQAGTHP--DY----YTLIPEKGK--NALGIDAVREVTEKLNEHARLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + AANALLK+LEEPP + F L + +L+T+RSRC Sbjct: 114 VTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 >gi|300867279|ref|ZP_07111939.1| DNA polymerase III subunit delta' [Oscillatoria sp. PCC 6506] gi|300334756|emb|CBN57105.1| DNA polymerase III subunit delta' [Oscillatoria sp. PCC 6506] Length = 319 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 21/293 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F P+ +Q ++ +E L+Q R+ LF G +G+G+ +L + +L + +F Sbjct: 4 FAPIISQ----NQAVE-LLTQAVAKNRIAPGYLFAGTRGVGR-SLAAQCFIELLFSTNFG 57 Query: 66 K----APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRI 118 A ++ + P + + LH LS G R I +++IR I Sbjct: 58 DTKAIATLQKRIQERNHPDLLWIEPTYLHQGKRLSAKEAEAAGLKRKAPPQIRLEQIREI 117 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 FL V++++ + M +AAN LLK+LEE P K ILI+ ++L T+ Sbjct: 118 GQFLGRPPLEASRSVVVLEQAETMAESAANGLLKTLEE-PGKATLILIAPGFESLLPTLV 176 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC I F L +N + + L++ S + + + A GS AI+I D + Sbjct: 177 SRCQRIPFYRLDKNAMKQVLQKTGNQEIVSHPEIMAM-AQGSPGEAIEIWQQLGDIPENL 235 Query: 239 YIDLIHIPRQ-EYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKS 285 + +P AL+ ++I L S+ Q D+L +F+ EI KS Sbjct: 236 LRKVQQLPESIREALELAREIDKNLDSEAQLWLVDYLQHCYWRQFLSGEIRKS 288 >gi|327438109|dbj|BAK14474.1| ATPase [Solibacillus silvestris StLB046] Length = 340 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA +FEGE+G GK + + +L P C C + H Sbjct: 33 RLAHAYIFEGEKGTGKRDVVSFFMKLLLCGNLSENVPCETCRN--C-----RRVDSGNHP 85 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 ++ + P G++ I +D+IR + + +T ++ ++ D +N +AN LL Sbjct: 86 NIW---QVEPD-GQF---IKIDQIRDLVAEMKMTGVEKGKKIYVLHHADKLNIASANMLL 138 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K LEEP +V+ IL++ +I+ TIRSRC IKF Sbjct: 139 KFLEEPDGQVVAILLTEQIQSIIPTIRSRCQHIKF 173 >gi|239630114|ref|ZP_04673145.1| DNA replication ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527726|gb|EEQ66727.1| DNA replication ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 326 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ + LF G +G GK L A + AP C P +++ +H D Sbjct: 26 QLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQC------PECERILNHNHPD 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + I VD+IR ++ +S T G RV +++ D M AAN+LL Sbjct: 80 VMVVKTETQS--------IKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K EEP + IL + + +L TI SR I F S + + LE+ G S+ Sbjct: 132 KFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLEE---GGATSQMA 188 Query: 212 FVKIAAYGSVARAIKIL 228 V G+VA A +L Sbjct: 189 RVAGRLTGNVADAQALL 205 >gi|172039295|ref|YP_001805796.1| DNA polymerase III subunit delta' [Cyanothece sp. ATCC 51142] gi|171700749|gb|ACB53730.1| DNA polymerase III, delta prime subunit [Cyanothece sp. ATCC 51142] Length = 313 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFSKAP 68 ++L G L Q R+ A LF G G+G+A LG + +L + P+ +A Sbjct: 5 RQLIGQPSGVALLQQAIAKNRIAPAYLFAGPSGVGRA-LGAKCFTQLLLSLGLPNEKQAS 63 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLT 125 ++ D P + H LS +TG R + ++++R I FLS Sbjct: 64 LKKRILDGNHPDFYWVEPTYQHQGQLLSAKEAQETGLKRKAPPQVRIEQVRDITQFLSRP 123 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 V++I+ + M AAN LLK+LEEP K ILI+ ++ ++L T+ SRC I Sbjct: 124 PLEASRCVVVIEAAETMTEAAANGLLKTLEEP-GKATLILIAPSADSLLPTLVSRCQKIP 182 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 F LS+ NL L +L + D + ++ GS AI Sbjct: 183 FYRLSDANLKTILGRLGYEEIVNHPDIIGLSQ-GSPGEAI 221 >gi|167749159|ref|ZP_02421286.1| hypothetical protein EUBSIR_00110 [Eubacterium siraeum DSM 15702] gi|167657878|gb|EDS02008.1| hypothetical protein EUBSIR_00110 [Eubacterium siraeum DSM 15702] Length = 318 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 19/208 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +LFG + L++ S R+ H ++ GE+GIGK T A L + P C Sbjct: 12 KLFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C + HA D +Y K K+ + + +R F S N R Sbjct: 72 RS--CRNIIS--GEHA--DVIY------AKGEKY----SKESVRDNVCFASTLPNDSDTR 115 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V + + + M N LLK++EEP + +I + IL TI+SR + I + ++ Sbjct: 116 VFIYEDCEEMTEEQQNVLLKAIEEPSKYNRYIFTCSNTSQILETIKSRLVCIPISDMTAE 175 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LE G+DS + YG+ Sbjct: 176 ECVSCLE---YNGYDSDTAKRAVELYGT 200 >gi|168467157|ref|ZP_02700999.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630445|gb|EDX49071.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 334 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y +G HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAGHGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|110636913|ref|YP_677120.1| DNA polymerase III gamma/tau subunit [Cytophaga hutchinsonii ATCC 33406] gi|110279594|gb|ABG57780.1| DNA polymerase III gamma/tau subunit [Cytophaga hutchinsonii ATCC 33406] Length = 375 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I V+E R + +S+ A ++V++I + M ANALLKSLEEPP K LF+LI+ Sbjct: 130 LINVEESRTVVKKISMKAFEAEYKVVIIWLPETMRAEGANALLKSLEEPPAKTLFLLITA 189 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK-IMGWDSKRDFVKIAAYGSVARAIKI 227 +L+TI SR ++ ++ + + L Q + I +KR V A G++ AI++ Sbjct: 190 KQEKLLTTIISRTQRVQVRLFNDAEIRQYLIQHRNISEAQAKR--VTYLADGNMREAIQL 247 Query: 228 L 228 L Sbjct: 248 L 248 >gi|296128437|ref|YP_003635687.1| DNA polymerase III, delta prime subunit [Cellulomonas flavigena DSM 20109] gi|296020252|gb|ADG73488.1| DNA polymerase III, delta prime subunit [Cellulomonas flavigena DSM 20109] Length = 378 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD R + + + G WRVI+++ D N +AN LLK++EEPP + +++L + + Sbjct: 86 IRVDTTRPLVELAQRSPSQGRWRVIVVEDADRFNDQSANVLLKAVEEPPPRTVWLLCAPS 145 Query: 170 SPTILSTIRSRCLSIKF 186 +L TIRSR S+ Sbjct: 146 PEDVLVTIRSRSRSVGL 162 >gi|294813917|ref|ZP_06772560.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] gi|294326516|gb|EFG08159.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 481 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 48 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 103 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + + +A + + G VD+ R +R Sbjct: 104 CEQGP----TPTPCGECLSCRDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 152 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 153 AFFGPASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 212 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L + L ++ KI D V A GSV ++ ++ D++++ Sbjct: 213 HHYPFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVM----DQLLA 268 Query: 238 SYID 241 D Sbjct: 269 GATD 272 >gi|297242600|ref|ZP_06926539.1| DNA polymerase III subunit gamma/tau [Gardnerella vaginalis AMD] gi|296889409|gb|EFH28142.1| DNA polymerase III subunit gamma/tau [Gardnerella vaginalis AMD] Length = 392 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 17/190 (8%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G E + L + C+ ++ + L G G G + R L++PD + + Sbjct: 7 VIGQEQVVSRLRKIACADASKIAQSWLICGAAGFG-SAQVARAFAAALESPDHGEGSDEI 65 Query: 72 CNPDPCSPFVKQM--ASHA-LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 + S K++ SH +H +LN +D++R +T Sbjct: 66 SGENELSKTAKEVLAGSHPDVHTLAAKGVTLN-----------IDDVREAIGISEQMPST 114 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 WR+I+I+ VD M + N LLK +EEP + +++L + + +L TIRSR ++ + Sbjct: 115 APWRIIIIEDVDRMLERSTNVLLKEIEEPSEHTIWLLCASSVMDVLPTIRSRTQLVQLAT 174 Query: 189 LSENNLYKAL 198 +E ++ + L Sbjct: 175 PNEQSIAEYL 184 >gi|171741465|ref|ZP_02917272.1| hypothetical protein BIFDEN_00550 [Bifidobacterium dentium ATCC 27678] gi|171277079|gb|EDT44740.1| hypothetical protein BIFDEN_00550 [Bifidobacterium dentium ATCC 27678] Length = 383 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 14 LFGHEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G + + L C + + L G G G++ + +A L++PD Sbjct: 7 IVGQRQVVEQLKTISCGDPKSIAQSWLICGPPGSGRSNVARAFAA-ALESPDHGLG---- 61 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D + +Q+ + D L+ + + I +D++R + +T W Sbjct: 62 ---DEPTKVTQQVLAGTHPDVTVLATN--------KVTIGIDQVRDLITTSEQMPSTAPW 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR + S Sbjct: 111 RIIIIEDVDRMLERTTNVLLKEIEEPSEHAIWLLCAPSAQDVLPTIRSRTRIVNLAVPSN 170 Query: 192 NNLYKALEQ 200 + K LE+ Sbjct: 171 QAVAKFLEE 179 >gi|326442330|ref|ZP_08217064.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECLSCRDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L + L ++ KI D V A GSV ++ ++ D++++ Sbjct: 173 HHYPFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVM----DQLLA 228 Query: 238 SYID 241 D Sbjct: 229 GATD 232 >gi|306823746|ref|ZP_07457120.1| DNA polymerase III subunit delta' [Bifidobacterium dentium ATCC 27679] gi|309801862|ref|ZP_07695979.1| DNA polymerase III, delta' subunit [Bifidobacterium dentium JCVIHMP022] gi|304552744|gb|EFM40657.1| DNA polymerase III subunit delta' [Bifidobacterium dentium ATCC 27679] gi|308221514|gb|EFO77809.1| DNA polymerase III, delta' subunit [Bifidobacterium dentium JCVIHMP022] Length = 383 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 14 LFGHEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G + + L C + + L G G G++ + +A L++PD Sbjct: 7 IVGQRQVVEQLKTISCGDPKSIAQSWLICGPPGSGRSNVARAFAA-ALESPDHGLG---- 61 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D + +Q+ + D L+ + + I +D++R + +T W Sbjct: 62 ---DEPTKVTQQVLAGTHPDVTVLATN--------KVTIGIDQVRDLITTSEQMPSTAPW 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR + S Sbjct: 111 RIIIIEDVDRMLERTTNVLLKEIEEPSEHAIWLLCAPSAQDVLPTIRSRTRIVNLAVPSN 170 Query: 192 NNLYKALEQ 200 + K LE+ Sbjct: 171 QAVAKFLEE 179 >gi|297572178|ref|YP_003697952.1| DNA polymerase III subunits gamma/tau [Arcanobacterium haemolyticum DSM 20595] gi|296932525|gb|ADH93333.1| DNA polymerase III, subunits gamma and tau [Arcanobacterium haemolyticum DSM 20595] Length = 848 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 23/240 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + L +GR HA LF G +G GK T R L + Sbjct: 10 RRYRPQSFQEVIGQDHVVAPLKAALAAGRTTHAYLFSGPRGCGK-TTSARILARCLNCAN 68 Query: 64 F-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + P +C + C + A D + L + + VD+ R +R Sbjct: 69 YPTDTPCGVC--ESCRDLARDGAGSL--DVVELDAASH---------GGVDDARDLREQA 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +++ +ID ++ NALLK +EEPP+ V FI + ++ TIRSR Sbjct: 116 GFAPVRDRFKIFIIDEAHMVSNQGFNALLKLVEEPPEHVKFIFATTEPEKVIGTIRSRTH 175 Query: 183 SIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISS 238 F + +L K L +L G + +D + + A GSV + +L D+II Sbjct: 176 HYPFRLVPPLDLEKYLARLCAQEGVSASKDVLSLVIRAGTGSVRDTLSVL----DQIIGG 231 >gi|281490941|ref|YP_003352921.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. lactis KF147] gi|281374699|gb|ADA64219.1| DNA polymerase III, delta prime subunit [Lactococcus lactis subsp. lactis KF147] Length = 286 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 18/157 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 G++ HA LF G G G L + + +NP+ S P C C V Q L Sbjct: 21 GKLSHAYLFSG--GFGSFELAIWLSQALFCENPENS-LPCGHCRS--CR-LVAQQEFTDL 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + P +T +IR + + + G +VI+I + M+ NAANA Sbjct: 75 H-------IVEPDGQTIKTA----QIRELTQVFNESGYEGKQQVILIKEAEKMHPNAANA 123 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LLKS+EEP +++ L++ IL TI+SR I F Sbjct: 124 LLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF 160 >gi|228905828|ref|ZP_04069726.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis IBL 200] gi|228853768|gb|EEM98527.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis IBL 200] Length = 327 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 14/179 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQGEFSKTGLEANKKLYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L++ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQE 181 >gi|150015007|ref|YP_001307261.1| DNA polymerase III subunit delta' [Clostridium beijerinckii NCIMB 8052] gi|149901472|gb|ABR32305.1| DNA polymerase III delta' subunit [Clostridium beijerinckii NCIMB 8052] Length = 310 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 30/189 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++ GH++I ++ HA L G GIGK+ + + +++ Sbjct: 2 RKIIGHKNIIDNINNRRQKDSFSHANLIIGNDGIGKSIVAKYLSNQIIK----------- 50 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 + + + YS N + VD++R I ++ G Sbjct: 51 -------------ERNGVESVDIVRYSPNSNS------FGVDDVRNIISEVNKKPYEGDK 91 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ D + A NALLK++EEPP+ V IL+S + IL TI+SRC + L++ Sbjct: 92 KVLILYKCDKLTVQAQNALLKTIEEPPRGVHLILLSDSLEVILDTIKSRCQIYRLTPLNK 151 Query: 192 NNLYKALEQ 200 + LE+ Sbjct: 152 EEILSYLEE 160 >gi|119953249|ref|YP_945458.1| DNA polymerase III subunits gamma and tau [Borrelia turicatae 91E135] gi|119862020|gb|AAX17788.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135] Length = 548 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L + ++ +A +F G +G+GK + +A + + P MC Sbjct: 19 LEGQDFVVETLKHSIENNKIANAYIFSGPRGVGKTSSARAFARCLNCKIGPTIMPCDMCF 78 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K + + D + + + N +V ++++I+ + + +RV Sbjct: 79 S------CKSIDNDNKLDIIEIDGASNT---------SVQDVKQIKEEIMFPPASSRYRV 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ +A NALLK++EEPP ++FI + + TI+SRC F L + Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQHFNFRLLPLDK 183 Query: 194 LYKALEQL 201 +Y+ L+ + Sbjct: 184 VYEMLKHV 191 >gi|168003463|ref|XP_001754432.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694534|gb|EDQ80882.1| predicted protein [Physcomitrella patens subsp. patens] Length = 220 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 29/208 (13%) Query: 2 IDRAFDPVYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-G 56 + R F+ Y + F G + K LS + +F G +G GK + +A G Sbjct: 3 LTRTFNQKYRPKNFNEIVGQNVVVKSLSTAVAKRKAAPVYMFMGPRGTGKTSAARVFAAG 62 Query: 57 HVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH---DFLYLSYSLNPKTGKWRTVITVD 113 +PD+++ P +C ++ + AL+ D + + N R ++ Sbjct: 63 LNCLSPDYARRPCGIC---------RECGTIALNRSADVRQIDAASNMDMASMRALMG-- 111 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 S T + Y ++ +++ D ++ + NA LK LEEPP+ V+FILI+ + I Sbjct: 112 ---------SFTPHAQY-KIFIVEGCDLLSSDIWNAFLKLLEEPPRNVVFILITTHAERI 161 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 T SRC +F L E ++ K L+ L Sbjct: 162 PPTAISRCQKFQFFKLKEPDIVKRLQFL 189 >gi|326328860|ref|ZP_08195194.1| DNA polymerase III, delta' subunit [Nocardioidaceae bacterium Broad-1] gi|325953345|gb|EGD45351.1| DNA polymerase III, delta' subunit [Nocardioidaceae bacterium Broad-1] Length = 386 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 20/194 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + L M + LF G G G++ +A LQ PD C Sbjct: 12 LVGQRHVIPTLQTAAAGHGMTQSWLFTGPPGSGRSNAAIAFA-AALQCPDGG------CG 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 H H L S++ + + VDEIR + +LT W++ Sbjct: 65 -----------RCHQCHTVLTGSHADVNLVRTEKLTLGVDEIRDLVRQSALTPAGSRWQI 113 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++I+ D + A NALLK++EEP + +++L + +L TIRSRC + + + + Sbjct: 114 LIIEDADRLTEQANNALLKAVEEPGARTVWMLCAPTVEDVLPTIRSRCRLVTLTTPTAPD 173 Query: 194 LYKALEQLKIMGWD 207 + L+ + +G D Sbjct: 174 VTAFLQ--RTLGVD 185 >gi|284929544|ref|YP_003422066.1| DNA polymerase III delta prime subunit [cyanobacterium UCYN-A] gi|284809988|gb|ADB95685.1| DNA polymerase III, delta prime subunit [cyanobacterium UCYN-A] Length = 317 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 31/284 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 Q L G L Q ++ A LF G G+G+ R A FS + V Sbjct: 5 QHLIGQTQSTTLLKQIIIKNKIAPAYLFSGPTGVGR-----RLAARSFCKSIFSLSKVLQ 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---------------ITVDEIR 116 N ++ + H LY GK T+ I +D+IR Sbjct: 60 ENQTT----LEHRILNGNHPDLYWIEPTYQYKGKLFTIRQAQENGLKSNSSPQIRIDQIR 115 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I FLS V++I+ + M A+N LLK+LEE + +++S+ + +L T Sbjct: 116 NITNFLSRPPLESIRSVVIIESAEMMTEAASNGLLKTLEEAKLATIILIVSNQN-LLLPT 174 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 + SRC I F +LSE +L + L + ++ +K++ GS +AI +++ ++I Sbjct: 175 LVSRCQIIPFYNLSEKDLKQVLRKSDYENIINEEKIIKLSQ-GSPGKAIG--YWNQLQLI 231 Query: 237 SSYI--DLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEF 277 S I L IP +L+ ++I EL + Q D++ F Sbjct: 232 PSEITDTLEKIPLSYLNSLELSKKITVELNNSTQIFLIDYMQHF 275 >gi|302553089|ref|ZP_07305431.1| DNA polymerase III subunit delta' [Streptomyces viridochromogenes DSM 40736] gi|302470707|gb|EFL33800.1| DNA polymerase III subunit delta' [Streptomyces viridochromogenes DSM 40736] Length = 401 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMAS 86 + +M HA LF G G G+ R LQ +PD + C D C Sbjct: 40 ASKMTHAWLFTGPPGAGR-NQAARAFAAALQCVSPDRALGGAPGCGFCDGC--------- 89 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 H L +++ T I D++R +R + AN G W++I+++ + +N Sbjct: 90 ---HTALVGTHADVTTVAAVGTQILADDMRDTVRKSFTSPAN-GRWQIILVEDAERLNEK 145 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +ANA+LK++EEP + +++L + + +L TIRSRC + ++ S Sbjct: 146 SANAVLKAVEEPAPRTVWLLCAPSIEDVLPTIRSRCRHLNLSTPS 190 >gi|184201528|ref|YP_001855735.1| DNA polymerase III delta' subunit [Kocuria rhizophila DC2201] gi|183581758|dbj|BAG30229.1| DNA polymerase III delta' subunit [Kocuria rhizophila DC2201] Length = 375 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+++E R + + G WR+++++ D M +N +LKS+EEPP +++L + + Sbjct: 86 ISIEEARELVVRAQDRPSVGSWRIMIVEDADRMTERTSNVMLKSIEEPPPHTIWLLCAPS 145 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TIRSRC ++ S ++ + L Sbjct: 146 PMDVLVTIRSRCRAVTLKVPSPEDVARLL 174 >gi|206972561|ref|ZP_03233504.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1134] gi|228950580|ref|ZP_04112715.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067796|ref|ZP_04201114.1| DNA polymerase III, delta prime subunit [Bacillus cereus F65185] gi|229176632|ref|ZP_04304037.1| DNA polymerase III, delta prime subunit [Bacillus cereus 172560W] gi|229188317|ref|ZP_04315366.1| DNA polymerase III, delta prime subunit [Bacillus cereus ATCC 10876] gi|206732463|gb|EDZ49642.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH1134] gi|228595116|gb|EEK52886.1| DNA polymerase III, delta prime subunit [Bacillus cereus ATCC 10876] gi|228606799|gb|EEK64215.1| DNA polymerase III, delta prime subunit [Bacillus cereus 172560W] gi|228715280|gb|EEL67138.1| DNA polymerase III, delta prime subunit [Bacillus cereus F65185] gi|228809055|gb|EEM55539.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 327 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSERNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKLYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|51473372|ref|YP_067129.1| DNA polymerase III subunit delta' [Rickettsia typhi str. Wilmington] gi|51459684|gb|AAU03647.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 264 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 48/75 (64%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++ +IR+++ FL+ T+ +V +I D MN NAANA LK LE+ P+ LI+ Sbjct: 71 ISIGQIRKLQDFLNKTSAISGHKVAVIYTADFMNLNAANACLKILEDAPKNSYIFLITSR 130 Query: 170 SPTILSTIRSRCLSI 184 + +I+STIRSRC + Sbjct: 131 AASIISTIRSRCFKV 145 >gi|28493677|ref|NP_787838.1| DNA polymerase III subunits gamma and tau [Tropheryma whipplei str. Twist] gi|28476719|gb|AAO44807.1| DNA polymerase III gamma and tau subunit [Tropheryma whipplei str. Twist] Length = 522 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G + + LS + R+ HA LF G +G GK T +A + + Sbjct: 10 RRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARCLNCVNG 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + +P C C + + +L + S N VD+ R +R Sbjct: 70 P--TSSPCGKCQS--CIDLGRS-GNGSLDVIEIDAASHN----------GVDDARALRER 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +R+ ++D + NALLK +EEPP V FI + +L TIRSR Sbjct: 115 AIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRT 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 S F +S + + + + KI D V A GSV + IL Sbjct: 175 FSYPFALVSASVMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSIL 225 >gi|145221988|ref|YP_001132666.1| DNA polymerase III subunit delta' [Mycobacterium gilvum PYR-GCK] gi|145214474|gb|ABP43878.1| DNA polymerase III, delta prime subunit [Mycobacterium gilvum PYR-GCK] Length = 404 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A LQ + C C MA Sbjct: 38 TGTMTHAWLITGPPGSGRSIAALCFAA-ALQCTSEGRP---GCGE--CRACTTTMAGTHA 91 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VD +R I S TG W++++++ D + AANA Sbjct: 92 DVRRIIPEGLS---------IGVDAMRAIVQIASRRPGTGRWQIVVVEDADRLTEGAANA 142 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRC 181 LLK +EEPP +F+L + + I T+RSRC Sbjct: 143 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRC 176 >gi|289450274|ref|YP_003475314.1| hypothetical protein HMPREF0868_1013 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184821|gb|ADC91246.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 349 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 13/200 (6%) Query: 2 IDRAFDPVYNQR--LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 +D+A + N R L G +D+ L+ GR+ +L G G GK A ++L Sbjct: 1 MDKALEINVNGRRQLVGRKDLRHSLATVLSDGRLR-VVLLSGPPGSGKHVTALAAARYLL 59 Query: 60 QNPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + ++K + +C + L DF KT + R I + Sbjct: 60 CSEAYAKNTDLTVCENCSDCRYTASSTHPDLLDFYPTDQEKLIKTERVRAEICAE----- 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + L++ G R+ +I P D +N + N LLKSLE P IL + S +L T+R Sbjct: 115 ---MPLSSRRGGRRIFII-PADYLNETSQNVLLKSLENIPDLTYVILTASHSEAVLVTLR 170 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SRC + L+E + + L Sbjct: 171 SRCTLFRMPRLTETEMRELL 190 >gi|84495035|ref|ZP_00994154.1| ATPase [Janibacter sp. HTCC2649] gi|84384528|gb|EAQ00408.1| ATPase [Janibacter sp. HTCC2649] Length = 379 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA LF G G G+ ++ R LQ P R C +HA D Sbjct: 27 MTHAWLFTGPPGSGR-SVAARAFAAALQCPSGGCGECRECR-------TAADGTHADVDL 78 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + + L+ I V++ R + + + G WRVI+++ D + AA+ALLK Sbjct: 79 IA-TEGLS---------IKVEQARDLVALAAHRPSVGTWRVIIVEDADRLTERAADALLK 128 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +LEEP + +++L + + ++ TIRSR ++ + S Sbjct: 129 ALEEPTPRTVWMLCAPSVEDVIITIRSRSRHVRLRTPS 166 >gi|302530809|ref|ZP_07283151.1| DNA polymerase III [Streptomyces sp. AA4] gi|302439704|gb|EFL11520.1| DNA polymerase III [Streptomyces sp. AA4] Length = 399 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 19/168 (11%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA L G G G++ +A LQ + C C MA Sbjct: 42 MTHAWLLTGPPGSGRSVAARTFAA-ALQCSTGTG-----CGA--CPGCRTTMAGTHADVR 93 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L + L+ I+V E+R + + TG W+V++I+ D + A+NALLK Sbjct: 94 LVVPEGLS---------ISVAEMRALVQAAARRPTTGEWQVVIIEDADRLTEGASNALLK 144 Query: 153 SLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKAL 198 ++EEPP + +F+L + + P +S TIRSRC + + + + L Sbjct: 145 AVEEPPARTVFLLCAPSDHPEDVSVTIRSRCRLVPLRTPPAEAIAQVL 192 >gi|254796749|ref|YP_003081585.1| hypothetical protein NRI_0361 [Neorickettsia risticii str. Illinois] gi|254589959|gb|ACT69321.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 266 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 46/77 (59%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V ++RI FL+LT+N ++I++ + + AANALLK LEE Q ILI+ Sbjct: 58 IKVAHVQRIHDFLNLTSNFSNQKIIIMSHFEIITSGAANALLKVLEEGKQTATLILIARY 117 Query: 170 SPTILSTIRSRCLSIKF 186 S I +T+RSRC + F Sbjct: 118 SQQITNTVRSRCFHLYF 134 >gi|288561616|ref|YP_003429022.1| DNA polymerase III subunit delta' [Bacillus pseudofirmus OF4] gi|288548248|gb|ADC52130.1| DNA polymerase III subunit delta' [Bacillus pseudofirmus OF4] Length = 317 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 47/73 (64%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + ++++R ++ LS +++++I+ D + A NALLKS+EEP Q+ +F L+S Sbjct: 81 TLKIEQVRELQKALSYCNVESDFKMVVIEKADTLTIQAQNALLKSIEEPEQQTIFFLLSS 140 Query: 169 ASPTILSTIRSRC 181 +S +L T+RSRC Sbjct: 141 SSNNMLPTVRSRC 153 >gi|256833406|ref|YP_003162133.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] gi|256686937|gb|ACV09830.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] Length = 385 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 48/80 (60%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + I +D++R + + + + G WR+I+I+ D M N LLK++EEPP + +++L Sbjct: 83 KVTIAIDDVRGLISEATRSPSQGRWRIIIIEDADRMMERTTNVLLKAIEEPPPRTIWLLC 142 Query: 167 SHASPTILSTIRSRCLSIKF 186 + + ++ TIRSRC ++ Sbjct: 143 APSPQDVMVTIRSRCRNLAL 162 >gi|254421036|ref|ZP_05034760.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas sp. BAL3] gi|196187213|gb|EDX82189.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas sp. BAL3] Length = 623 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 29/239 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T R L Sbjct: 74 VLARKYRPRTFEDLIGQEAMVRTLTNAFSTGRIAHAFMLTGVRGVGKTTTA-RLLARALN 132 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-LNPKTGKWRTVITVDEIRRIR 119 N S + P + +H HD ++ ++ + V++IR I Sbjct: 133 NETES-----IDRPSLT------LTAHGRHDAAIMAGQHMDVMEMDAASHTGVNDIRDIL 181 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V ++D V ++ A NALLK+LEEPP FI + + TI S Sbjct: 182 ESVRYAPVEARYKVYVLDEVHMLSTQAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILS 241 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI----------AAYGSVARAIKIL 228 RC + L L G ++R+ +KI AA GSV + +L Sbjct: 242 RCQRFDLRRVEPEILIGHL------GRIAEREGMKIEQDALALISRAAEGSVRDGLSLL 294 >gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] Length = 581 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC +A H D + + + N +V++IR Sbjct: 70 IGPDGQGGP----TTDPCGKCEHCVAIMEGRHVDVMEMDAASN---------TSVNDIRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176 Query: 178 RSRC 181 SRC Sbjct: 177 LSRC 180 >gi|302559327|ref|ZP_07311669.1| DNA polymerase III, delta' subunit [Streptomyces griseoflavus Tu4000] gi|302476945|gb|EFL40038.1| DNA polymerase III, delta' subunit [Streptomyces griseoflavus Tu4000] Length = 401 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMASHA 88 RM HA LF G G G+ R LQ +PD + C D C Sbjct: 42 RMTHAWLFTGPPGAGR-NQAARAFAAALQCVSPDRALGGAPGCGFCDGC----------- 89 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L +++ + I V ++R +R + AN G W+VI+++ + +N +A Sbjct: 90 -HTALIGTHADVSAVAAVGSEILVKDMRDTVRKSFTAPAN-GRWQVILVEDAERLNEKSA 147 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 NA+LK++EEP + +++L + + +L TIRSRC + ++ S Sbjct: 148 NAVLKAVEEPAPRTVWLLCAPSIEDVLPTIRSRCRHLNLSTPS 190 >gi|229170882|ref|ZP_04298485.1| DNA polymerase III, delta prime subunit [Bacillus cereus MM3] gi|228612548|gb|EEK69767.1| DNA polymerase III, delta prime subunit [Bacillus cereus MM3] Length = 252 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSGRNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T +V +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKVYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|302870394|ref|YP_003839031.1| DNA polymerase III subunits gamma and tau [Micromonospora aurantiaca ATCC 27029] gi|302573253|gb|ADL49455.1| DNA polymerase III, subunits gamma and tau [Micromonospora aurantiaca ATCC 27029] Length = 970 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 84/206 (40%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 + P P+PC Q S L P G VI VD+ Sbjct: 63 CEQGPT----PEPCG----QCDS---------CRGLAPDGGGSIDVIEIDAASHGGVDDA 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +++ +ID ++ NALLK +EEPP+ V FI + +L Sbjct: 106 RELREKAFFAPARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLG 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TI+SR F + LEQL Sbjct: 166 TIKSRTHHYPFRLFPPKVVRPYLEQL 191 >gi|209886655|ref|YP_002290512.1| DNA polymerase III, subunits gamma and tau [Oligotropha carboxidovorans OM5] gi|209874851|gb|ACI94647.1| DNA polymerase III, subunits gamma and tau [Oligotropha carboxidovorans OM5] Length = 632 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 13/183 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 44 VLARKYRPSNFDDLIGQEAMVRTISNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 102 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + PD S + P P M S + D L + + + TG +D++R+I Sbjct: 103 YELPDGSAKGPSIAMPVPGVHCQAIMESRHI-DVLEMDAASH--TG-------IDDVRQI 152 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ Sbjct: 153 TDGVRYAPSSARYKVYIIDEVHMLSEKAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVL 212 Query: 179 SRC 181 SRC Sbjct: 213 SRC 215 >gi|311028963|ref|ZP_07707053.1| DNA polymerase III subunit delta' [Bacillus sp. m3-13] Length = 330 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA L +G +G GK + + +A +L P + C+ K++ S Sbjct: 25 NRIAHAYLLDGMKGTGKKEVSYLFAKSLLCKDLQGVNPCQSCSN------CKRIDSRNHP 78 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + P I +I+ ++ + T ++ +ID D M NAAN+L Sbjct: 79 DV----HVVEPDGNS----IKKQQIQFLQEEFTKTGLESKRKIYIIDHADKMTTNAANSL 130 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LK LEEP Q+ L++ +L+TI SRC + F +L+ L L Sbjct: 131 LKFLEEPNQETFAFLLTENVNQMLNTIISRCQPLSFRALTSEGLVAKL 178 >gi|228918982|ref|ZP_04082362.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229039936|ref|ZP_04189701.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH676] gi|228727395|gb|EEL78587.1| DNA polymerase III, delta prime subunit [Bacillus cereus AH676] gi|228840631|gb|EEM85892.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 327 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L R+ HA L EG +G GK + A L + P +C Sbjct: 17 KMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSERNGVEPCHVCTN------C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S H L++ + P I +I ++ S T ++ +I+ D Sbjct: 71 KRIDS-GNHPNLHI---VKPDG----LSIKKQQIHDLQEEFSKTGLEANKKLYIIEHADR 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 M NAAN LLK LEEP IL++ S IL+TI SRC + F L +L + L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180 >gi|227522513|ref|ZP_03952562.1| DNA polymerase III subunit delta' [Lactobacillus hilgardii ATCC 8290] gi|227090335|gb|EEI25647.1| DNA polymerase III subunit delta' [Lactobacillus hilgardii ATCC 8290] Length = 336 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 14/173 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA LF GE G G+ + A + P C C+ ++ +H D Sbjct: 28 ELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKC--AECT----RIMNHDHPD 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + T I VD+IR ++ + +A G +V +I D M AAN+LL Sbjct: 82 VVI--------TKPDGLSIKVDQIRHVKSEFTKSAMEGSKKVFIISDADKMTTGAANSLL 133 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 K +EEP V+ LIS IL TI SR ++F S+ ++ + + L + I+ Sbjct: 134 KFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKSGIL 186 >gi|27383227|ref|NP_774756.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium japonicum USDA 110] gi|27356401|dbj|BAC53381.1| DNA polymerase III tau subunit [Bradyrhizobium japonicum USDA 110] Length = 613 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 25/230 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 23 VLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 81 Query: 60 -QNPDFS-KAP-VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + PD S K P + M N + + D L + + + TG VD++R Sbjct: 82 YEMPDGSVKGPTIHMPN---LGVHCQAIMESRHMDVLEMDAASH--TG-------VDDVR 129 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T Sbjct: 130 QINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVT 189 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARA 224 + SRC + + L K L + + ++ V+I A G +ARA Sbjct: 190 VLSRCQRFDLRRVEADVLMKHLASI------AAKESVEIEPEALGIIARA 233 >gi|329121190|ref|ZP_08249818.1| DNA polymerase III, subunits gamma and tau [Dialister micraerophilus DSM 19965] gi|327470272|gb|EGF15733.1| DNA polymerase III, subunits gamma and tau [Dialister micraerophilus DSM 19965] Length = 582 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 17/188 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L ++ HA LF G +G GK ++ A Sbjct: 8 RKWRPRTFSEVVGQKHISVPLCNALIQNKVAHAYLFSGPRGTGKTSMAKILA-------- 59 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFL 122 V NP+ +P + ++ L Y ++ + + ++EIR ++ + Sbjct: 60 ---KAVNCLNPENSNPCNNCPNCNEINQGNSLDVYEIDAASNRG-----IEEIRALKESV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +V +ID V + + A NALLK+LEEPP ++FIL + I TI SRC Sbjct: 112 CSLPATCRKKVYIIDEVHMLTKEAFNALLKTLEEPPSYIMFILATTEPEKIPLTILSRCQ 171 Query: 183 SIKFNSLS 190 +F +S Sbjct: 172 RYEFRRIS 179 >gi|303234523|ref|ZP_07321160.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302494357|gb|EFL54126.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 272 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + IT+D+IR I F+S +V++I D M A+NALLK+LEEP V FIL+ Sbjct: 68 KNSITIDKIRDIAKFVSTKPFESNNKVVLIRQADLMRTEASNALLKNLEEPRPFVYFILL 127 Query: 167 SHASPTILSTIRSRCLSIKFNSLSEN 192 + +L TI SRC I + EN Sbjct: 128 TDNKNKLLKTIISRCQVINYLKEKEN 153 >gi|299143251|ref|ZP_07036331.1| ATPase involved in DNA replication [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517736|gb|EFI41475.1| ATPase involved in DNA replication [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 314 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 32/215 (14%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G+ + + L Q + + HA LF G +G+GK T +A +L C D Sbjct: 7 GNSKVLQELEQNIINRDISHAYLFFGSEGVGKYTAAKAFAKRIL------------CGED 54 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT--VITVDEIRRIRYFLSLTANTGYWRV 133 S + DF + P R+ I ++I R+ + +V Sbjct: 55 TIS-------CKKIFDFSH------PDLRIIRSEDTINKEDIERLILDAAKMPYESENKV 101 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++D D A NALLK+LEEP + ILI+ IL TI SR IKF +S Sbjct: 102 FIVDGFDEFTIGAQNALLKTLEEPQYYLKIILIAKNINKILPTIISRTRIIKFKDVSNEE 161 Query: 194 LYKALEQLKIMGWDSKRD--FVKIAAYGSVARAIK 226 + K L + G D K F +I+ GSV RAI+ Sbjct: 162 IEKFL--INKEGIDEKNAHLFSRISV-GSVKRAIR 193 >gi|160914735|ref|ZP_02076949.1| hypothetical protein EUBDOL_00742 [Eubacterium dolichum DSM 3991] gi|158433275|gb|EDP11564.1| hypothetical protein EUBDOL_00742 [Eubacterium dolichum DSM 3991] Length = 325 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 9 VYNQRLFGHEDIE-KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSK 66 ++ +RL + I + L C R+ HA +F G G GK + A +L + + F+ Sbjct: 1 MFKERLRKQQPIAYQTLENALCQDRLAHAYMFNGPSGTGKKEAAYLLAQSILCDAEGFAC 60 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 +C +++ + D +YL S I ++I +++ S T Sbjct: 61 ESCAIC---------QRVLHNEYSDMIYLDGSTK--------AIKKEDIMKLQSAFSKTG 103 Query: 127 NTGYWRVIMI-DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G + I I D + +A N+LLK LEEP ++ IL+ A +L TI SRC I Sbjct: 104 LEGKGKKIYILDHAENATVDALNSLLKFLEEPNSDMIAILLVEALDRVLPTIVSRCQIIP 163 Query: 186 FNSLSENNLY 195 F +L + Y Sbjct: 164 FIALGSDVCY 173 >gi|28572868|ref|NP_789648.1| DNA polymerase III subunits gamma and tau [Tropheryma whipplei TW08/27] gi|28411001|emb|CAD67386.1| DNA polymerase III subunit gamma/tau [Tropheryma whipplei TW08/27] Length = 522 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G + + LS + R+ HA LF G +G GK T +A + + Sbjct: 10 RRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARCLNCVNG 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + +P C C + + +L + S N VD+ R +R Sbjct: 70 P--TSSPCGKCQS--CIDLGRS-GNGSLDVIEIDAASHN----------GVDDARALRER 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +R+ ++D + NALLK +EEPP V FI + +L TIRSR Sbjct: 115 AIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRT 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 S F +S + + + + KI D V A GSV + IL Sbjct: 175 FSYPFALVSASIMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSIL 225 >gi|315503329|ref|YP_004082216.1| DNA polymerase iii, subunits gamma and tau [Micromonospora sp. L5] gi|315409948|gb|ADU08065.1| DNA polymerase III, subunits gamma and tau [Micromonospora sp. L5] Length = 970 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 84/206 (40%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + LSQ SGR++HA LF G +G GK T R L + Sbjct: 7 RKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 + P P+PC Q S L P G VI VD+ Sbjct: 63 CEQGPT----PEPCG----QCDS---------CRGLAPDGGGSIDVIEIDAASHGGVDDA 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +++ +ID ++ NALLK +EEPP+ V FI + +L Sbjct: 106 RELREKAFFAPARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLG 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TI+SR F + LEQL Sbjct: 166 TIKSRTHHYPFRLFPPKVVRPYLEQL 191 >gi|228476205|ref|ZP_04060908.1| DNA polymerase III delta subunit [Staphylococcus hominis SK119] gi|314937309|ref|ZP_07844651.1| putative DNA polymerase III, delta prime subunit [Staphylococcus hominis subsp. hominis C80] gi|228269690|gb|EEK11189.1| DNA polymerase III delta subunit [Staphylococcus hominis SK119] gi|313654605|gb|EFS18355.1| putative DNA polymerase III, delta prime subunit [Staphylococcus hominis subsp. hominis C80] Length = 308 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 23/169 (13%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E+++K L+ + S ++ HA LFEG+ + +A +L CN + Sbjct: 2 EELQK-LANAFHSNKLSHAYLFEGDDAQSMKHVAMEFAQLIL------------CNGNEQ 48 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + +H DF Y+S + I ++I ++ ++ G ++V +I+ Sbjct: 49 CELKLRNFNHP--DFTYISSE--------ESTIKKEQIEQLVRQMNQLPIEGTYKVYIIE 98 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP+ + ILIS IL+TI SRC + F Sbjct: 99 DFEKLTVQGENSILKFLEEPPENTIAILISTKPEQILNTIHSRCQHMYF 147 >gi|71666770|ref|XP_820341.1| replication factor C, subunit 5 [Trypanosoma cruzi strain CL Brener] gi|70885681|gb|EAN98490.1| replication factor C, subunit 5, putative [Trypanosoma cruzi] gi|322820991|gb|EFZ27446.1| replication factor C, subunit 5, putative [Trypanosoma cruzi] Length = 349 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 18/188 (9%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 ++ + L + S + H LL+ G G GK T HV +S +R+ + Sbjct: 20 ELTEVLKRLAESQDLPHLLLY-GPSGTGKKTRAMAVLHHVYGPSVYS---LRLEHRS--- 72 Query: 79 PFVKQMASHALHDFLYLS----YSLNPK-TGKWRTVITVDEIRRIRYFLSL---TANTGY 130 Q+ + D LS +NP G + VI + IR I +SL T+N Sbjct: 73 ---VQVTDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVSLQSSTSNGVK 129 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD M R A +AL +++E+ +LI +++ +++ +RSRCL+++ S S Sbjct: 130 YKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLRSRCLAVRVPSHS 189 Query: 191 ENNLYKAL 198 + NL K + Sbjct: 190 KENLTKVI 197 >gi|295402003|ref|ZP_06811965.1| DNA polymerase III, delta prime subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109178|ref|YP_003987494.1| DNA polymerase III delta prime subunit [Geobacillus sp. Y4.1MC1] gi|294976005|gb|EFG51621.1| DNA polymerase III, delta prime subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214279|gb|ADP72883.1| DNA polymerase III, delta prime subunit [Geobacillus sp. Y4.1MC1] Length = 330 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 14/182 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L++ GR+ HA LFEG++G GK + A + +++ ++ CN C Sbjct: 17 KMLTKSLEKGRISHAYLFEGQRGTGKKAMSLLLAKSLF---CLNRSGIKPCNE--CRN-C 70 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +++ S D + + P + ++I ++ + TA ++ +I+ D Sbjct: 71 RRIDSGNHPDV----HIIEPDGQS----VKKEQIEMLQQEFTKTAVESDRKLYIIEHADK 122 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 M NAAN+LLK LEEP + IL++ +L TI SRC F + L LE+ Sbjct: 123 MTTNAANSLLKFLEEPRPGTVAILLTEQYHRMLETIISRCQVFSFKPIPPALLANYLEKQ 182 Query: 202 KI 203 +I Sbjct: 183 QI 184 >gi|305680163|ref|ZP_07402973.1| DNA polymerase III, subunit gamma and tau [Corynebacterium matruchotii ATCC 14266] gi|305660783|gb|EFM50280.1| DNA polymerase III, subunit gamma and tau [Corynebacterium matruchotii ATCC 14266] Length = 977 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 17/199 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 R + P L G E + LS +GR++HA LF G +G GK T R L N Sbjct: 5 RKYRPGSFNELVGQEQVTVPLSAALDNGRINHAYLFSGPRGCGK-TSSARIMARSLNCVN 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 SK P CN +A++ + G VD++R +R Sbjct: 64 GPTSK-PCGKCN------SCVSLAANGPGNLDVTELDAASHNG-------VDDMRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +R+ +ID + +NALLK +EEPP ++FI + ++ TIRSR Sbjct: 110 AMFAPAESRYRIFIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPEKVIGTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQ 200 F L+ + LE+ Sbjct: 170 HHYPFRLLTPQAMRGLLER 188 >gi|227876482|ref|ZP_03994594.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|227843023|gb|EEJ53220.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] Length = 725 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 96/256 (37%), Gaps = 33/256 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L +GR++HA LF G +G GK T R L Sbjct: 7 RRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTT-SARIMARCLNC-- 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V P PC + +A+ + G VD+ R +R Sbjct: 64 -----VEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKAL------EQLKI----------MGWDSKRDFVKIAAYGSVARAI 225 F ++ L L E +K+ G S RD + I A Sbjct: 172 HHYPFRLVAPEILRDYLADLCHREGVKVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAE 231 Query: 226 KILHYDCDKIISSYID 241 ILHYD + Y D Sbjct: 232 PILHYDRAVALLGYTD 247 >gi|91974569|ref|YP_567228.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris BisB5] gi|91681025|gb|ABE37327.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris BisB5] Length = 624 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 41/238 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 31 VLARKYRPNSFEDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTA-RILARALN 89 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWR 107 + PD S K P M H +H D L + + + TG Sbjct: 90 YEMPDGSVKGPT------------IHMPVHGVHCKAIMESRHMDVLEMDAASH--TG--- 132 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 133 ----VDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 188 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-VKIAAYGSVARA 224 + T+ SRC + + L K L G +K V+ A G +ARA Sbjct: 189 TEIRKVPVTVLSRCQRFDLRRVEADVLMKHL-----AGIAAKEGVEVEPEALGIIARA 241 >gi|29831166|ref|NP_825800.1| DNA polymerase III subunit delta' [Streptomyces avermitilis MA-4680] gi|29608280|dbj|BAC72335.1| putative DNA polymerase III delta prime subunit [Streptomyces avermitilis MA-4680] Length = 401 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMAS 86 + +M HA LF G G G+ T +A LQ +PD + + C D C Sbjct: 40 ASKMTHAWLFTGPPGAGRTTAARAFA-AALQCVSPDRALGGIPGCGFCDGC--------- 89 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 H L +++ T I D++R +R + AN G W+VI+++ + +N Sbjct: 90 ---HTALLGTHADVSTVAAVGTQILADDMRDTVRKSFTSPAN-GRWQVILVEDAERLNEK 145 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ANA+LK++EEP + +++L + + +L TIRSRC Sbjct: 146 SANAVLKAVEEPAPRTVWLLCAPSVEDVLPTIRSRC 181 >gi|227513697|ref|ZP_03943746.1| DNA polymerase III subunit delta' [Lactobacillus buchneri ATCC 11577] gi|227083016|gb|EEI18328.1| DNA polymerase III subunit delta' [Lactobacillus buchneri ATCC 11577] Length = 336 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 14/173 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA LF GE G G+ + A + P C C+ ++ +H D Sbjct: 28 ELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKC--AECT----RIMNHDHPD 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + T I VD+IR ++ + +A G +V +I D M AAN+LL Sbjct: 82 VVI--------TKPDGLSIKVDQIRHVKSEFTKSAMEGSKKVFIISDADKMTTGAANSLL 133 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 K +EEP V+ LIS IL TI SR ++F S+ ++ + + L + I+ Sbjct: 134 KFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKSGIL 186 >gi|254517432|ref|ZP_05129488.1| predicted protein [Clostridium sp. 7_2_43FAA] gi|226911181|gb|EEH96382.1| predicted protein [Clostridium sp. 7_2_43FAA] Length = 311 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 30/196 (15%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + GHE I + + HA + GE GIGK+ L A +L Sbjct: 3 QFIGHERIIDSFKKRIEKDEISHAHIIVGEDGIGKSNLAKILAKSILG-----------V 51 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + D S + S ++ VD++R I ++ + Sbjct: 52 HEDRNSIDIVNYRSK-------------------KSSFGVDDVREIVDEINKKPFESDKK 92 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 VI+I + + A NALLK++EEPP+ V IL+ + IL TI+SRC K L++N Sbjct: 93 VIIIYDGNKLTVQAQNALLKTIEEPPKGVFIILLCESLELILDTIKSRCQVYKLTPLTKN 152 Query: 193 NLYKALEQLKIMGWDS 208 + +E L I + S Sbjct: 153 EVNIYIESLGIDDYSS 168 >gi|213024200|ref|ZP_03338647.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 150 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 15/161 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 + G ++V +ID V ++R++ NALLK+LEEPP V Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHV 150 >gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] gi|326948924|gb|AEA22621.1| DNA polymerase III, subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] Length = 829 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK T R L N + Sbjct: 17 RKYRPAKFAEVVGQEHVTEPLGVALTAGRINHAYLFSGPRGCGK-TSSARILARSL-NCE 74 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PDPC P +A + G VD+ R +R Sbjct: 75 LGP------TPDPCGVCPSCIALAPEGPGSIDVVELDAASHGG-------VDDARELRDR 121 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP ++FI + +L TIRSR Sbjct: 122 AFYAPAESRYRVFIVDEAHMVTTQGFNALLKIVEEPPDHLVFIFATTEPEKVLPTIRSRT 181 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE++ Sbjct: 182 HHYPFRLIPPGTLRALLERI 201 >gi|319426609|gb|ADV54683.1| DNA polymerase III, delta prime subunit [Shewanella putrefaciens 200] Length = 318 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N +ANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCVRLTATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++TI SRC I F Sbjct: 154 PARLMATISSRCQRIPF 170 >gi|84786646|gb|ABC62828.1| DNA polymerase III tau subunit [Erythrobacter litoralis HTCC2594] Length = 521 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 86/213 (40%), Gaps = 23/213 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ HA L G +G+GK + R L PD P DPC A Sbjct: 13 RLAHAFLMTGVRGVGKTSTA-RLIAKSLNCIGPDGQGGP----TIDPCGQCEPCTAIAEG 67 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + TG VD++R I + A + +++ +ID V ++RNA NA Sbjct: 68 RHIDVIEMDAASHTG-------VDDVREIIEAVRYAAVSARFKIYIIDEVHMLSRNAFNA 120 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK----ALEQLKIMG 205 LLK+LEEPP V F+ + + T+ SR + + L K EQ ++ Sbjct: 121 LLKTLEEPPAHVKFLFATTEVDKLPVTVLSRTQRFDLRRIPADLLQKHFGWVCEQEQVEA 180 Query: 206 WDSKRDFVKIAAYGSVARAIKIL-----HYDCD 233 D + AA GSV + IL H D D Sbjct: 181 EDEALAMIAAAAEGSVRDGLSILDQAIAHADLD 213 >gi|302336220|ref|YP_003801427.1| DNA polymerase III, delta prime subunit [Olsenella uli DSM 7084] gi|301320060|gb|ADK68547.1| DNA polymerase III, delta prime subunit [Olsenella uli DSM 7084] Length = 379 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 141 GMNRNA-ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 G+ R A ANALLK++EEPP+ V FIL++ ++ ++ TI SRC + F +S +A+E Sbjct: 121 GLLRGASANALLKTIEEPPEGVHFILMARSAAAVMPTIASRCQQVPFRIVSPGAAERAVE 180 Query: 200 -QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +GW+++ V +A G+ A + L Sbjct: 181 LAAGTVGWEAR---VALAVAGTPQGAAEFL 207 >gi|239980932|ref|ZP_04703456.1| DNA polymerase III subunits gamma and tau [Streptomyces albus J1074] Length = 406 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 25/233 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P PDPC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPDPCGTCQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKIL 228 F + L + L + + G + R V A GSV ++ ++ Sbjct: 173 HHYPFRLVPPGTLREYLAE--VCGKEGSRVEDGVLPLVVRAGAGSVRDSMSVM 223 >gi|56418560|ref|YP_145878.1| DNA polymerase III subunit delta' [Geobacillus kaustophilus HTA426] gi|56378402|dbj|BAD74310.1| DNA-directed DNA polymerase III delta' subunit [Geobacillus kaustophilus HTA426] Length = 328 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L GR+ HA LFEG++G GK + A +L F +P+ + PC Sbjct: 13 VAKMLQSGLEKGRISHAYLFEGQRGTGK-----KAASLLLAKRLFCLSPIGV---SPCLE 64 Query: 80 F--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 +++ S D +S P G I ++I ++ S TA ++ +++ Sbjct: 65 CRNCRRIDSGNHPDVRVIS----PDGGS----IKKEQIEWLQQEFSKTAVESDKKMYIVE 116 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 D M +AAN+LLK LEEP + +L++ +L TI SRC + F L L + Sbjct: 117 HADQMTTSAANSLLKFLEEPHPGTVAVLLTEQYHRLLGTIVSRCQVLSFRPLPPAELAQG 176 Query: 198 L 198 L Sbjct: 177 L 177 >gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708] gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708] Length = 663 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 17/176 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ S ++ A LF G +G GK + A + L++ + P Sbjct: 17 ELVGQEAITTTLTNAISSAKIAPAYLFTGPRGTGKTSSARILAKSLNCLKSDKPTPIPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DICQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F Sbjct: 122 YKVYVIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQRFDF 177 >gi|254821838|ref|ZP_05226839.1| DNA polymerase III subunit delta' [Mycobacterium intracellulare ATCC 13950] Length = 225 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 25/205 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS--- 86 +G M HA L G G G++ +A LQ C+ V+ Sbjct: 37 AGTMTHAWLITGPPGSGRSVAALCFAA-ALQ----------------CTSTVEDGGPGCG 79 Query: 87 --HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 HA + ++S + I VDE+R I S TG+ ++++I+ D + Sbjct: 80 RCHACTTTMAGTHSDVRRVIPEGLSIGVDEMRAIVQIASRRPATGHRQIVVIEDADRLTE 139 Query: 145 NAANALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 AANALLK +EEPP +F+L + + I T+RSRC + + S + + L Sbjct: 140 GAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVALVTPSTEAIARVLVDSD 199 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKI 227 + ++ D+ + G V RA ++ Sbjct: 200 GLSPETA-DWAASVSGGHVGRARRL 223 >gi|120598612|ref|YP_963186.1| DNA polymerase III subunit delta' [Shewanella sp. W3-18-1] gi|120558705|gb|ABM24632.1| DNA polymerase III, delta prime subunit [Shewanella sp. W3-18-1] Length = 318 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N +ANALLK+LEEP + L IL S Sbjct: 94 IKVDQIRELCVRLTATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLILQSDT 153 Query: 170 SPTILSTIRSRCLSIKF 186 +++TI SRC I F Sbjct: 154 PARLMATISSRCQRIPF 170 >gi|291452794|ref|ZP_06592184.1| DNA polymerase III, subunits gamma and tau [Streptomyces albus J1074] gi|291355743|gb|EFE82645.1| DNA polymerase III, subunits gamma and tau [Streptomyces albus J1074] Length = 416 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 25/233 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P PDPC + +A + + G VD+ R +R Sbjct: 74 CEQGP----TPDPCGTCQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKIL 228 F + L + L + + G + R V A GSV ++ ++ Sbjct: 183 HHYPFRLVPPGTLREYLAE--VCGKEGSRVEDGVLPLVVRAGAGSVRDSMSVM 233 >gi|119944853|ref|YP_942533.1| DNA polymerase III, delta prime subunit [Psychromonas ingrahamii 37] gi|119863457|gb|ABM02934.1| DNA polymerase III, delta prime subunit [Psychromonas ingrahamii 37] Length = 342 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + +GR HALLF G GIGK LG A ++L + +K + C F Sbjct: 20 KQLINTFQAGRFAHALLFTGCAGIGKFELGKHLAKYLLCS---NKQAASCGHCHSCQLFE 76 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q +H DF L N G ++++R + L+ + G +V++I + Sbjct: 77 AQ--NHL--DFHLLQNETNKSIG-------IEQVRNLIAKLNERPHLGDNKVVIIKNANL 125 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + AANALLK+LEEP IL++ + ++ T+ SR ++ + L+ L Sbjct: 126 LTTAAANALLKTLEEPQGNSYLILLTRSHHQLMPTLLSRVQHTHLHTPEDTELFAWL 182 >gi|251794052|ref|YP_003008783.1| DNA polymerase III delta prime subunit [Paenibacillus sp. JDR-2] gi|247541678|gb|ACS98696.1| DNA polymerase III, delta prime subunit [Paenibacillus sp. JDR-2] Length = 325 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 15/187 (8%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +++ G ++ L SG++ HA LF G G G+ + +A + A Sbjct: 4 EQVAGQWKAKRILKHALQSGKVSHAYLFYGPSGTGRKAMARAFAKALFCTSGGDDA---- 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C ++ + D L ++ P I +D+IR ++ L+ + Sbjct: 60 C--DHCLE-CRKFENGNQPDLL----TITPDG----QSIKIDQIRELQRELAYRGSGASR 108 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +++ + M AAN+LLK LEEP ++ ILI+ +L TIRSR + F S Sbjct: 109 KVYIVERAETMTLQAANSLLKFLEEPLSPIVAILITDNGQAVLPTIRSRAQWVPFLPFSA 168 Query: 192 NNLYKAL 198 + + ++L Sbjct: 169 SEMLQSL 175 >gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3] Length = 633 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 15/232 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L+ + +GR+ A + G +G+GK T A + Sbjct: 16 VLARKYRPKSFSDLIGQEAMVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + TG +D+IR I Sbjct: 76 KTKDIDQPTTLF--DTLGEHCTQIIEGRHIDVIEMDAA--SHTG-------IDDIREIIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 125 QIRYRPVAARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 C + L L Q+ K+ D + AA GSV A+ IL Sbjct: 185 CQRFNLRRIEATVLLTHLRQIAQLEKVEAQDQALFMIAHAAEGSVRDALSIL 236 >gi|320527137|ref|ZP_08028324.1| DNA polymerase III, subunit gamma and tau [Solobacterium moorei F0204] gi|320132465|gb|EFW25008.1| DNA polymerase III, subunit gamma and tau [Solobacterium moorei F0204] Length = 572 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 26/242 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVR 70 + + G E I + + ++ HA LF G +G GK T+ A V ++P+ KAP Sbjct: 16 EEVVGQEYIVQSIKNAVREHKVGHAYLFCGPRGTGKTTMARLLAKAVNCEHPE--KAPCE 73 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C A++ H + + N V++IR + L G+ Sbjct: 74 EC--DNCI-----AANNGTHPDIIEINAANE--------THVEDIRDLIDRSKLAPMQGH 118 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V ++D V ++ A++ALLK+LEEPP+ V+F+L + +L TI SRC F L Sbjct: 119 HKVYIVDEVHQLSSAASSALLKTLEEPPENVIFVLATTDPQKLLPTIISRCQRFDFTKLR 178 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCDKIISSYIDL 242 +N+L ++ I + + + + G + A+ I+ Y D I + +D Sbjct: 179 KDQIKNHLLDIAKKENIYLDEEAAENIAVLCDGGMRDALSIMDQCASYTSDHITAEEVDH 238 Query: 243 IH 244 I+ Sbjct: 239 IY 240 >gi|291529961|emb|CBK95546.1| hypothetical protein EUS_02030 [Eubacterium siraeum 70/3] Length = 318 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 19/208 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +LFG + L++ S R+ H ++ GE+GIGK T A L + P C Sbjct: 12 KLFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C + HA D +Y K K+ + + +R F S N R Sbjct: 72 RS--CRNII--TGEHA--DVIY------AKGEKY----SKESVRDNVCFASTLPNDSDTR 115 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V + + + M N LLK++EEP + +I + IL TI+SR + I + ++ Sbjct: 116 VFIYEDCEEMTEEQQNLLLKAIEEPSKYNRYIFTCSNTSQILETIKSRLVCIPVSDMTAE 175 Query: 193 NLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LE G+DS + YG+ Sbjct: 176 ECISCLE---YNGYDSDTAKRAVELYGT 200 >gi|284046856|ref|YP_003397196.1| DNA polymerase III delta prime subunit [Conexibacter woesei DSM 14684] gi|283951077|gb|ADB53821.1| DNA polymerase III, delta prime subunit [Conexibacter woesei DSM 14684] Length = 373 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 21/203 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 GR HA LF G G GK R A F+ A + + DP S + H Sbjct: 24 GGRPSHAYLFHGPSGSGK-----RVAARA-----FASALLAEGSADPDS--ARTRVEHGT 71 Query: 90 H-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H D +++ P V ++E + ++T RV +I+ D + AAN Sbjct: 72 HPDLTWVT----PSGAHEMLVGDIEEP--VVAAAAMTPFESARRVFVIERADTLIDQAAN 125 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 +LK+LEEP V +L++ +L TIRSRC ++F++L++ L + + + + + Sbjct: 126 KMLKTLEEPAPFVHLVLLTDRLAEVLPTIRSRCQLVRFDALTDEQLAERVGRHGVAP-EQ 184 Query: 209 KRDFVKIAAYGSVARAIKILHYD 231 R ++ A G ARA+++ D Sbjct: 185 ARAVARL-ALGDGARALELALGD 206 >gi|291455871|ref|ZP_06595261.1| putative DNA polymerase III, delta' subunit [Bifidobacterium breve DSM 20213] gi|291382280|gb|EFE89798.1| putative DNA polymerase III, delta' subunit [Bifidobacterium breve DSM 20213] Length = 383 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQQPVIDMLSRIAQGDPSQIAQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSDEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RIT---------QQVLAGTHPDVTVLATN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIVIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|320538797|ref|ZP_08038474.1| DNA polymerase III, delta prime subunit [Serratia symbiotica str. Tucson] gi|320031142|gb|EFW13144.1| DNA polymerase III, delta prime subunit [Serratia symbiotica str. Tucson] Length = 334 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 L P+ GK + ++ IR++ L A G +VI + + + AANALLK+LEEPP Sbjct: 78 LVPEKGK--NSVGIEPIRQVIERLYSHAQQGGAKVIWLSQAELLTEAAANALLKTLEEPP 135 Query: 159 QKVLFILISHASPTILSTIRSRCL 182 +K F+L +L+T+RSRCL Sbjct: 136 EKTYFLLGCREPSRLLATLRSRCL 159 >gi|323438401|gb|EGA96159.1| DNA polymerase III delta prime subunit [Staphylococcus aureus O11] gi|323441267|gb|EGA98938.1| DNA polymerase III delta prime subunit [Staphylococcus aureus O46] Length = 273 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] Length = 589 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 28/231 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R FD V G + + + + + HA +F G +G GK + A V Sbjct: 12 RTFDEV-----VGQDQVINSIKYQVKNSTVSHAYIFSGTRGTGKTSTAKILARAVNCEHP 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C + C ++ D + + + N VD+IR +R Sbjct: 67 IDGNPCNEC--ETCKSILRGTN----LDVVEMDAASNNG---------VDDIRDLREKAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T ++V +ID V +++ A NALLK LEEPP+ ++FIL + + TI SR Sbjct: 112 YPPSTSKYKVYIIDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQR 171 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKIL 228 F +S + + K + + I+ + K D + A GS+ A+ +L Sbjct: 172 YTFKRISIDTISKNISE--ILAKEGKSIDEAGIDLIAQMADGSMRDAVSLL 220 >gi|324113894|gb|EGC07868.1| DNA polymerase III [Escherichia fergusonii B253] Length = 334 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P +K+ R C Sbjct: 10 DFEKLVANYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGNKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK +D +R + L + G +V+ Sbjct: 67 -----LMQAGTHP--DY----YALIPEKGK--NAQGIDTVREVSEKLYEHSRLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I + AANALLK+LEEPP F L + +L+T+RSRCL Sbjct: 114 IPDAALLTDAAANALLKTLEEPPADTWFFLATKEPARLLATLRSRCL 160 >gi|21282168|ref|NP_645256.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus MW2] gi|49485348|ref|YP_042569.1| putative DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|82750191|ref|YP_415932.1| DNA polymerase III delta prime subunit [Staphylococcus aureus RF122] gi|253735217|ref|ZP_04869382.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus TCH130] gi|258424481|ref|ZP_05687360.1| DNA polymerase III delta prime subunit [Staphylococcus aureus A9635] gi|282915801|ref|ZP_06323569.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus D139] gi|283768919|ref|ZP_06341828.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus H19] gi|297207414|ref|ZP_06923853.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910373|ref|ZP_07127826.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus TCH70] gi|21203604|dbj|BAB94304.1| probable DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus MW2] gi|49243791|emb|CAG42216.1| putative DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|82655722|emb|CAI80121.1| probable DNA polymerase III delta prime subunit [Staphylococcus aureus RF122] gi|253726777|gb|EES95506.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus TCH130] gi|257845350|gb|EEV69385.1| DNA polymerase III delta prime subunit [Staphylococcus aureus A9635] gi|282320292|gb|EFB50634.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus D139] gi|283461100|gb|EFC08186.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus H19] gi|296887977|gb|EFH26871.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888362|gb|EFK83549.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus TCH70] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|313892534|ref|ZP_07826121.1| DNA polymerase III, subunit gamma and tau [Dialister microaerophilus UPII 345-E] gi|313118931|gb|EFR42136.1| DNA polymerase III, subunit gamma and tau [Dialister microaerophilus UPII 345-E] Length = 205 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 17/188 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + I L ++ HA LF G +G GK ++ Sbjct: 8 RKWRPRTFSEVVGQKHISVPLCNALIQNKVAHAYLFSGPRGTGKTSMA----------KI 57 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFL 122 +KA V NP+ +P + ++ L Y ++ + + ++EIR ++ + Sbjct: 58 LAKA-VNCLNPENSNPCNNCPNCNEINQGNSLDVYEIDAASNRG-----IEEIRALKESV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +V +ID V + + A NALLK+LEEPP ++FIL + I TI SRC Sbjct: 112 CSLPATCRKKVYIIDEVHMLTKEAFNALLKTLEEPPSYIMFILATTEPEKIPLTILSRCQ 171 Query: 183 SIKFNSLS 190 +F +S Sbjct: 172 RYEFRRIS 179 >gi|330813511|ref|YP_004357750.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter sp. IMCC9063] gi|327486606|gb|AEA81011.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter sp. IMCC9063] Length = 531 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 18/153 (11%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP---CSPFVKQMASHA 88 R+ +A L G +G+GK T A + N F C+ + C V +SH Sbjct: 13 RVPNAYLLTGIRGVGKTTTARIIAKAINCNKKFGSE--EKCSKEEYCHCEAIVD--SSHM 68 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D L + + KTG +D+IR I + ++V +ID V +++ A N Sbjct: 69 --DILEMDAA--SKTG-------IDDIREILESAQYLPASAKYKVFIIDEVHMLSKQAFN 117 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEPP + FIL + I TI SRC Sbjct: 118 ALLKTLEEPPPHLKFILATTEVKKIPVTILSRC 150 >gi|308171922|ref|YP_003918627.1| DNA polymerase III subunit delta' [Bacillus amyloliquefaciens DSM 7] gi|307604786|emb|CBI41157.1| DNA polymerase III delta' subunit [Bacillus amyloliquefaciens DSM 7] gi|328551732|gb|AEB22224.1| DNA polymerase III subunit delta' [Bacillus amyloliquefaciens TA208] gi|328909992|gb|AEB61588.1| DNA polymerase III delta'' subunit [Bacillus amyloliquefaciens LL3] Length = 329 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 34/219 (15%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H IEK R+ HA LFEG++G GK A +P Sbjct: 20 HNSIEK--------KRLSHAYLFEGKKGTGKLDAALLLAKSFF---------CLEAGTEP 62 Query: 77 CSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 C K++AS D + + P I +I+ ++ S T + ++ Sbjct: 63 CGECRNCKRIASGNHPDL----HVVQPDG----LSIKKAQIQSLQEEFSKTGLESHKKLY 114 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I D M NAAN+LLK LEEP Q + ILI+ IL TI SRC + F L Sbjct: 115 IISHADQMTTNAANSLLKFLEEPSQDTIAILITEQLHRILDTIVSRCQVLPFQPLQP--- 171 Query: 195 YKALEQLKIMGWDSKRDFVKIAA--YGSVARAIKILHYD 231 KA+E+ ++M + ++ A ++A A+++ D Sbjct: 172 -KAIEE-RLMEQEVSPHMARLLANMTNNIAEAVELSRND 208 >gi|283469776|emb|CAQ48987.1| DNA polymerase III delta' subunit [Staphylococcus aureus subsp. aureus ST398] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|218549174|ref|YP_002382965.1| DNA polymerase III subunit delta' [Escherichia fergusonii ATCC 35469] gi|218356715|emb|CAQ89343.1| DNA polymerase III, delta' subunit [Escherichia fergusonii ATCC 35469] Length = 334 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P +K+ R C Sbjct: 10 DFEKLVANYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGNKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK +D +R + L + G +V+ Sbjct: 67 -----LMQAGTHP--DY----YALIPEKGK--NAQGIDAVREVSEKLYEHSRLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I + AANALLK+LEEPP F L + +L+T+RSRCL Sbjct: 114 IPDAALLTDAAANALLKTLEEPPADTWFFLATKEPARLLATLRSRCL 160 >gi|313156873|gb|EFR56313.1| putative DNA polymerase III, delta' subunit [Alistipes sp. HGB5] Length = 381 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 50/243 (20%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G ED+++ L Q +GR+ HA LF G+ G G L Y ++ D Sbjct: 8 GQEDLKRHLVQSVDAGRISHAQLFTGQAGAGALALAVAYVQYL--------CCCHRRGGD 59 Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI---------RRIRYF--- 121 C P KQ+A+ A H L+L + +N + K V+ DE R YF Sbjct: 60 SCGECPDCKQIAALA-HPDLHLVFPVNKQGKKSGEVMRSDEFLPLFRGLFAERGGYFSAQ 118 Query: 122 ---------------------------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 LS + ++ ++I + MN AAN +LK L Sbjct: 119 DWYDRLDLGKTLKGMIAAREADDIIRKLSFKSFEADYKTMLIWLPEAMNEEAANKILKIL 178 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK 214 EEP +K LF+LIS +L TI SR + ++ + L +A ++ + R+ + Sbjct: 179 EEPWEKTLFLLISEQPERLLPTIISRTQEVAVPRIAPDVLERAAQERGVTDPVKARNIAR 238 Query: 215 IAA 217 +A Sbjct: 239 LAG 241 >gi|306778610|ref|ZP_07416947.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu002] gi|306790999|ref|ZP_07429321.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu004] gi|306791318|ref|ZP_07429620.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu005] gi|308328340|gb|EFP17191.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu002] gi|308332586|gb|EFP21437.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu004] gi|308340077|gb|EFP28928.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu005] Length = 578 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 21/242 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS +GR++HA LF G +G GK T R L + Sbjct: 5 RKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGK-TSSARILARSL---N 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P NP +A +A + G VD+ R +R Sbjct: 61 CAQGPT--ANPCGVCESCVSLAPNAPGSIDVVELDAASHGG-------VDDTRELRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 112 YAPVQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F L + L EQ ++ D+ V A GS + +L D++++ Sbjct: 172 YPFRLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL----DQLLAGA 227 Query: 240 ID 241 D Sbjct: 228 AD 229 >gi|253730950|ref|ZP_04865115.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257424595|ref|ZP_05601023.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427261|ref|ZP_05603662.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429897|ref|ZP_05606283.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257432600|ref|ZP_05608962.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus E1410] gi|257435505|ref|ZP_05611555.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus M876] gi|282910122|ref|ZP_06317928.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913310|ref|ZP_06321101.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus M899] gi|282918264|ref|ZP_06326004.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus C427] gi|282923015|ref|ZP_06330701.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus C101] gi|293500360|ref|ZP_06666212.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 58-424] gi|293509298|ref|ZP_06668014.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus M809] gi|293515886|ref|ZP_06670576.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus M1015] gi|253725300|gb|EES94029.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257272622|gb|EEV04742.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275912|gb|EEV07380.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279413|gb|EEV10008.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257282465|gb|EEV12598.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus E1410] gi|257285142|gb|EEV15259.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus M876] gi|282314534|gb|EFB44921.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus C101] gi|282317830|gb|EFB48199.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus C427] gi|282322781|gb|EFB53101.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus M899] gi|282325970|gb|EFB56276.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|290921294|gb|EFD98352.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096320|gb|EFE26580.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 58-424] gi|291467843|gb|EFF10353.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus M809] gi|312436428|gb|ADQ75499.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus TCH60] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|254414024|ref|ZP_05027792.1| DNA polymerase III, subunits gamma and tau [Microcoleus chthonoplastes PCC 7420] gi|196179160|gb|EDX74156.1| DNA polymerase III, subunits gamma and tau [Microcoleus chthonoplastes PCC 7420] Length = 379 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G I + L+ +G + + LF+G +G GK + +A + N S Sbjct: 14 YRPQNLSELVGQPLIVRTLTNELKTGNLPNVFLFDGPRGTGKTSTARIFAKSL--NCLSS 71 Query: 66 KAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P PC + + + S + D L + N VD+IR + + Sbjct: 72 SQPTLT----PCGTCLSCRSICSGSNLDVRELDAASNNG---------VDDIRELINYSK 118 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+ T +R+I +D ++R+A NA LK E+ +FIL + S +L TI SRC Sbjct: 119 LST-TNRYRIIYLDECQMLSRSAQNAALKLFEDRLPNTIFILATTESEKLLDTIISRCQH 177 Query: 184 IKFNSLSENNLYKALEQLKI 203 +F LS ++ + L Q+ + Sbjct: 178 FQFRRLSTQDITERLSQITL 197 >gi|188026128|ref|ZP_02960978.2| hypothetical protein PROSTU_02964 [Providencia stuartii ATCC 25827] gi|188021732|gb|EDU59772.1| hypothetical protein PROSTU_02964 [Providencia stuartii ATCC 25827] Length = 263 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + L P+ GK T ++V+ +R++ LS A +V I + + AANALLK+LEE Sbjct: 10 HVLEPEKGK--TTVSVEAVRKLTETLSSHAQQNGAKVAYIPRTEALTDAAANALLKTLEE 67 Query: 157 PPQKVLFILISHASPTILSTIRSRCL 182 P ++ F+L +L+T+RSRCL Sbjct: 68 PTKQTYFLLGCEKRENLLATLRSRCL 93 >gi|302332197|gb|ADL22390.1| DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus JKD6159] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|329731086|gb|EGG67458.1| hypothetical protein SA21193_2661 [Staphylococcus aureus subsp. aureus 21193] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|325497595|gb|EGC95454.1| DNA polymerase III subunit delta' [Escherichia fergusonii ECD227] Length = 334 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPD 75 D EK ++ Y +GR HHALL + G+G L + + ++L Q P +K+ R C Sbjct: 10 DFEKLVANYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGNKSCGHCRGCQ-- 66 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + Q +H D+ Y+L P+ GK +D +R + L + G +V+ Sbjct: 67 -----LMQAGTHP--DY----YALIPEKGK--NAQGIDAVREVSEKLYEHSRLGGAKVVW 113 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I + AANALLK+LEEPP F L + +L+T+RSRCL Sbjct: 114 IPDAALLTDAAANALLKTLEEPPADTWFFLATKEPARLLATLRSRCL 160 >gi|298693813|gb|ADI97035.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus ED133] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|49482711|ref|YP_039935.1| DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282903068|ref|ZP_06310960.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus C160] gi|282904859|ref|ZP_06312719.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282907806|ref|ZP_06315644.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|283957272|ref|ZP_06374730.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295427018|ref|ZP_06819655.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591607|ref|ZP_06950244.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus MN8] gi|49240840|emb|CAG39507.1| putative DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282328282|gb|EFB58557.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331976|gb|EFB61485.1| DNA polymerase III delta prime subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282596494|gb|EFC01454.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus C160] gi|283791196|gb|EFC30006.1| putative DNA polymerase III, delta prime subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295129021|gb|EFG58650.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575476|gb|EFH94193.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus MN8] gi|315193844|gb|EFU24238.1| putative DNA polymerase III, delta' subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 308 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D ++ L+ Y S ++ HA LFEG+ + +A +L C D S Sbjct: 2 DEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLIL------------CQTD--S 47 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 +++++ DF+Y+S + N I +++ ++ ++ +V +I+ Sbjct: 48 QCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLPIESTNKVYIIED 99 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 100 FEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 147 >gi|329925527|ref|ZP_08280401.1| DNA polymerase III, delta' subunit [Paenibacillus sp. HGF5] gi|328939810|gb|EGG36150.1| DNA polymerase III, delta' subunit [Paenibacillus sp. HGF5] Length = 328 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 17/186 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E ++ L + HA LF G G G+ +A + + Sbjct: 6 IVGQETAKQLLQNALRRNAVSHAYLFSGPNGAGQMQTALTFAKALF---------CTELD 56 Query: 74 PDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C ++ + H H L + + P I +D+IR ++ S + + Sbjct: 57 DDACGQCLECRKVEHGNHPDLTM---VEPDGAS----IKIDQIRDLQRIFSYRSENRNPK 109 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID + M AAN+LLK LEEP + ILI+ +L TI+SR + F +L Sbjct: 110 VYIIDRAEKMTTQAANSLLKFLEEPQAPAVAILIAENGQALLPTIQSRSQLVPFRALDPQ 169 Query: 193 NLYKAL 198 + K L Sbjct: 170 MMEKVL 175 >gi|262277951|ref|ZP_06055744.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium HIMB114] gi|262225054|gb|EEY75513.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium HIMB114] Length = 553 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 12/176 (6%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q L G + + + R+ +A L G +G GK T A + DF+ Sbjct: 12 YRPQKFQELIGQDSMVISIQNAIKLKRIPNAYLLTGIRGTGKTTTARIIAKAINCKVDFA 71 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + D C ++H D L + + KTG +D+IR I Sbjct: 72 -SDQKCSEGDFCHCESITNSNHI--DILEMDAA--SKTG-------IDDIREILEASKYH 119 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +T ++V +ID V +++ A NALLK+LEEPP + FIL + I TI SRC Sbjct: 120 PSTAEYKVFIIDEVHMLSKQAFNALLKTLEEPPPHLKFILATTEVKKIPVTILSRC 175 >gi|225351238|ref|ZP_03742261.1| hypothetical protein BIFPSEUDO_02830 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158694|gb|EEG71936.1| hypothetical protein BIFPSEUDO_02830 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 384 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD D + V+Q+ + D Sbjct: 28 IAQSWLICGPPGSGRSNVARAFAA-ALESPDHGLG-------DEPTKAVQQVLAGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I +DE+R I +T WR+I+I+ VD M N LLK Sbjct: 80 TVLATN--------KVTIGIDEVRDIITTSEQMPSTAPWRIIIIEDVDRMLERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +EEP +++L + ++ +L TIRSR + S + LEQ Sbjct: 132 EIEEPSAHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAAFLEQ 179 >gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma and tau [Mycobacterium ulcerans Agy99] gi|118571578|gb|ABL06329.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium ulcerans Agy99] Length = 621 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGK-TSSARILARSLNCAQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C + C + +A A + G VD+ R +R Sbjct: 64 GP--TATPCGTC--ESC----QALAPSAPGSIDVVELDAASHGG-------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RV +ID + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 109 RAFYAPAQSRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ ++ V A GS + +L Sbjct: 169 THHYPFRLLPRRTMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVL 220 >gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] Length = 620 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC A L +TG V +IR I Sbjct: 71 IGPDGNGGPTT----EPCGQCEHCTAIMEGRHVDVLEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ S Sbjct: 120 DSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RC + + L EQ +I D + AA GS A +L Sbjct: 180 RCQRFDLRRIEPEVMIALLRRIADAEQAQIS--DDALALITRAAEGSARDATSLL 232 >gi|15610857|ref|NP_218238.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis H37Rv] gi|15843342|ref|NP_338379.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis CDC1551] gi|31794893|ref|NP_857386.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis AF2122/97] gi|121639637|ref|YP_979861.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663586|ref|YP_001285109.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis H37Ra] gi|148824926|ref|YP_001289680.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis F11] gi|167970876|ref|ZP_02553153.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis H37Ra] gi|215405773|ref|ZP_03417954.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis 02_1987] gi|215413648|ref|ZP_03422316.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis 94_M4241A] gi|215432700|ref|ZP_03430619.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis EAS054] gi|215448061|ref|ZP_03434813.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis T85] gi|224992133|ref|YP_002646822.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG str. Tokyo 172] gi|253800767|ref|YP_003033768.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis KZN 1435] gi|254233216|ref|ZP_04926542.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium tuberculosis C] gi|254366266|ref|ZP_04982310.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium tuberculosis str. Haarlem] gi|254552831|ref|ZP_05143278.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184642|ref|ZP_05762116.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis CPHL_A] gi|260198766|ref|ZP_05766257.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis T46] gi|260202922|ref|ZP_05770413.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis K85] gi|289441157|ref|ZP_06430901.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T46] gi|289445320|ref|ZP_06435064.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis CPHL_A] gi|289555986|ref|ZP_06445196.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis KZN 605] gi|289572372|ref|ZP_06452599.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis K85] gi|289747560|ref|ZP_06506938.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis 02_1987] gi|289755852|ref|ZP_06515230.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis EAS054] gi|289759882|ref|ZP_06519260.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis T85] gi|294995369|ref|ZP_06801060.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis 210] gi|297636399|ref|ZP_06954179.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis KZN 4207] gi|297733393|ref|ZP_06962511.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis KZN R506] gi|298527198|ref|ZP_07014607.1| DNA polymerase III, gamma and tau subunits [Mycobacterium tuberculosis 94_M4241A] gi|306778078|ref|ZP_07416415.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu001] gi|306786633|ref|ZP_07424955.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu003] gi|306795383|ref|ZP_07433685.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu006] gi|306801354|ref|ZP_07438022.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu008] gi|306805565|ref|ZP_07442233.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu007] gi|306969962|ref|ZP_07482623.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu009] gi|306974195|ref|ZP_07486856.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu010] gi|307081903|ref|ZP_07491073.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu011] gi|307086516|ref|ZP_07495629.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu012] gi|313660724|ref|ZP_07817604.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis KZN V2475] gi|54036989|sp|P63976|DPO3X_MYCBO RecName: Full=DNA polymerase III subunit gamma/tau gi|54040950|sp|P63975|DPO3X_MYCTU RecName: Full=DNA polymerase III subunit gamma/tau gi|2960145|emb|CAA18043.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium tuberculosis H37Rv] gi|13883704|gb|AAK48193.1| DNA polymerase III, gamma and tau subunits [Mycobacterium tuberculosis CDC1551] gi|31620491|emb|CAD95934.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium bovis AF2122/97] gi|121495285|emb|CAL73771.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603009|gb|EAY61284.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium tuberculosis C] gi|134151778|gb|EBA43823.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium tuberculosis str. Haarlem] gi|148507738|gb|ABQ75547.1| DNA polymerase III subunits gamma and tau DnaZ/X [Mycobacterium tuberculosis H37Ra] gi|148723453|gb|ABR08078.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis F11] gi|224775248|dbj|BAH28054.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG str. Tokyo 172] gi|253322270|gb|ACT26873.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis KZN 1435] gi|289414076|gb|EFD11316.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T46] gi|289418278|gb|EFD15479.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis CPHL_A] gi|289440618|gb|EFD23111.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis KZN 605] gi|289536803|gb|EFD41381.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis K85] gi|289688088|gb|EFD55576.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis 02_1987] gi|289696439|gb|EFD63868.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis EAS054] gi|289715446|gb|EFD79458.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis T85] gi|298496992|gb|EFI32286.1| DNA polymerase III, gamma and tau subunits [Mycobacterium tuberculosis 94_M4241A] gi|308213607|gb|EFO73006.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu001] gi|308328744|gb|EFP17595.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu003] gi|308344067|gb|EFP32918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu006] gi|308347865|gb|EFP36716.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu007] gi|308351853|gb|EFP40704.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu008] gi|308352518|gb|EFP41369.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu009] gi|308356468|gb|EFP45319.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu010] gi|308360415|gb|EFP49266.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu011] gi|308364111|gb|EFP52962.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu012] gi|323717585|gb|EGB26787.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis CDC1551A] gi|326905560|gb|EGE52493.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis W-148] gi|328460495|gb|AEB05918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis KZN 4207] Length = 578 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 21/242 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS +GR++HA LF G +G GK T R L + Sbjct: 5 RKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGK-TSSARILARSL---N 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P NP +A +A + G VD+ R +R Sbjct: 61 CAQGPT--ANPCGVCESCVSLAPNAPGSIDVVELDAASHGG-------VDDTRELRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 112 YAPVQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F L + L EQ ++ D+ V A GS + +L D++++ Sbjct: 172 YPFRLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL----DQLLAGA 227 Query: 240 ID 241 D Sbjct: 228 AD 229 >gi|256848130|ref|ZP_05553574.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] gi|256715190|gb|EEU30167.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] Length = 335 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 64/324 (19%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLG----------FRYAGHVLQNPDFSKAPV 69 +E+F +G + HA LF G G GK L R AG PDF+ Sbjct: 16 VERF-QHIISNGELAHAYLFVGPNGSGKQELAQWLTLSIFCSHRQAGQ----PDFT---- 66 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C D C + +H + T + R I VD+IR ++ + + G Sbjct: 67 --C--DECQRILS--GNHP---------DVVRATAEGRQ-IKVDQIRHLKAEFTKSGMEG 110 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V +I+ D M +AAN+LLK +EEP L+++ +L TI+SR I+ L Sbjct: 111 QKKVFIIEDADKMTVSAANSLLKFIEEPGAGTYIFLLTNNKNAVLPTIQSRTQIIELQPL 170 Query: 190 SENNLYKALEQLKIMGW---------DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 ++ + L+ KI + DS + A +A+AI D ++ + Sbjct: 171 AKAITQELLDDQKIPEYLRSIILGLTDSAEQAAQWVADDWLAKAI-------DAVVQWFK 223 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQK--IAFDFLIEFILKEICKSAKAAALSGQL--E 296 +L+ A +Q + L S+ +K + D L+ I ++ + AA SGQL + Sbjct: 224 ELVQ--GDPVAFVDIQTVMKGLASEREKQLLMLD-LMALIWRDGLVAKLMAAESGQLYFQ 280 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + QI +V V +SM+ L Sbjct: 281 QWQQI------IVNGVQRYSMHQL 298 >gi|86608779|ref|YP_477541.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] Length = 779 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + L+ GR+ A LF G +G GK T R L + + P Sbjct: 22 VVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGK-TSSARILAKSL---NCEQGPT---- 73 Query: 74 PDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 PDPC + + + A D L + + N TG VD IR + + Sbjct: 74 PDPCQACSQCRAITAGASLDVLEIDAASN--TG-------VDNIRELIERAQFAPVNSRY 124 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 125 KVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPL 184 Query: 192 NNLYKALEQL 201 +++ L ++ Sbjct: 185 DDMVAHLGKI 194 >gi|212716793|ref|ZP_03324921.1| hypothetical protein BIFCAT_01732 [Bifidobacterium catenulatum DSM 16992] gi|212660497|gb|EEB21072.1| hypothetical protein BIFCAT_01732 [Bifidobacterium catenulatum DSM 16992] Length = 384 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD D + V+Q+ + D Sbjct: 28 IAQSWLICGPPGSGRSNVARAFAA-ALESPDHGLG-------DEPTKAVQQVLAGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I +DE+R I +T WR+I+I+ VD M N LLK Sbjct: 80 TVLATN--------KVTIGIDEVRDIITTSEQMPSTAPWRIIIIEDVDRMLERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +EEP +++L + ++ +L TIRSR + S + LEQ Sbjct: 132 EIEEPSAHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAAFLEQ 179 >gi|197103834|ref|YP_002129211.1| DNA polymerase III subunits gamma and tau [Phenylobacterium zucineum HLK1] gi|196477254|gb|ACG76782.1| DNA polymerase III subunits gamma and tau [Phenylobacterium zucineum HLK1] Length = 605 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 31/211 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + L+G E + + L + SGR+ HA + G +G+GK T R L Sbjct: 45 VIARKYRPRTFEDLYGQEAMVRTLRNAFASGRIAHAFMLTGVRGVGKTTTA-RLLARAL- 102 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWRTVI 110 ++ A V D + LH D L L + +TG Sbjct: 103 --NYETATVHEPTLD--------LKEEGLHCRAIIEGRHMDVLELDAA--SRTG------ 144 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 V++IR + + ++V +ID V ++ A NALLK+LEEPP FI + Sbjct: 145 -VNDIRELLDGVRYAPVEARYKVYIIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEI 203 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SR + L K LE + Sbjct: 204 RKVPVTILSRTQRFDLRRVEPEMLVKNLEMI 234 >gi|291514736|emb|CBK63946.1| hypothetical protein AL1_15270 [Alistipes shahii WAL 8301] Length = 381 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 51/268 (19%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G ED+++ L+ +GR+ HA LF G G G + Y ++ D Sbjct: 8 GQEDLKRHLTLSVDAGRVSHAQLFTGTAGSGALAVAVAYVQYLCCR--------HRSGGD 59 Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI---------RRIRYF--- 121 C P +Q+A+ A H L+L + +N + K V+ DE R YF Sbjct: 60 SCGECPDCRQIAALA-HPDLHLVFPVNKQGKKSGEVMRSDEFLPQFRALFAERGGYFSPQ 118 Query: 122 ---------------------------LSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 LS + ++ ++I + MN AAN +LK L Sbjct: 119 DWYDRLDLGKTLKGMIAAREADEIIRKLSFKSFEADYKTMLIWLPEAMNEEAANKILKIL 178 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK 214 EEP + LFIL+ +L TI SR + ++ + L + +Q + R+ + Sbjct: 179 EEPWDRTLFILVCEHPDRLLPTIVSRTQEVCVPRIAPDVLERVAQQRGVADPLQARNMAR 238 Query: 215 IAAYGSVARAIKILHYDCDKIISSYIDL 242 +A G + ++ + D + + DL Sbjct: 239 LAG-GDLLELGHLVAGESDAMRKEHFDL 265 >gi|169334895|ref|ZP_02862088.1| hypothetical protein ANASTE_01301 [Anaerofustis stercorihominis DSM 17244] gi|169257633|gb|EDS71599.1| hypothetical protein ANASTE_01301 [Anaerofustis stercorihominis DSM 17244] Length = 289 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 20/157 (12%) Query: 33 MHHALLF--EGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 M HA LF GE + K L F + K C D C +K ++ + Sbjct: 22 MSHAYLFYGAGEDVLDKTILEFLKTL-------YCKNSKYYC--DECEECIKINTNNNI- 71 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D ++ K I + +IR ++Y +SL+++ + + +I D M ++NA Sbjct: 72 DITHI--------YKDSASIKIKQIRDMQYKISLSSSEYKYNIFVIHNADTMTIESSNAF 123 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 LK+LEEP + + IL S + +L TI SRC+ IK N Sbjct: 124 LKTLEEPVKDTIIILSSPSKEILLPTILSRCIHIKVN 160 >gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] Length = 610 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 19/188 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+H A L G +G+GK T +L Sbjct: 31 VLARKYRPTTFADLIGQEPMVRTLENAFDLGRIHQAYLLTGVRGVGKTT-----TARILA 85 Query: 61 NPDFSKAPVRMCNPDPCSPFV--KQMASH--ALHDFLY---LSYSLNPKTGKWRTVITVD 113 + P + P P + ++ H A+ D + L TG +D Sbjct: 86 RAFNYELPAKDGRPAIDKPTIHMDELGVHCQAIIDSRHVDVLEMDAASHTG-------ID 138 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 ++R I +V +ID V +++ A N LLK+LEEPP+ V FI + + Sbjct: 139 DVREIIDNARYRPVMARTKVYIIDEVHMLSKAAFNGLLKTLEEPPEHVKFIFATTEIDKV 198 Query: 174 LSTIRSRC 181 T+RSRC Sbjct: 199 PVTVRSRC 206 >gi|27904815|ref|NP_777941.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340159|sp|Q89AG8|HOLB_BUCBP RecName: Full=DNA polymerase III subunit delta' gi|27904213|gb|AAO27046.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 336 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 8/153 (5%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + HH+++ E + IG L + +L Q + S + C+ + M S Sbjct: 21 NKGHHSIILESHKNIGITCLAKHISLWLLCQKKNKSIYHCKTCHS------CQLMNSKNH 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y + +T I V+E+R + +A G +++ I + + A N+ Sbjct: 75 PDWHYFGSNTCLSKNSSKT-IGVNEVRNFTNTIFNSAQQGQNKIVYIPNIKKLTEFAINS 133 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LLK +EEPPQ F+LI++ I++T+RSRC+ Sbjct: 134 LLKIIEEPPQNTYFLLINYLPHKIITTLRSRCI 166 >gi|218508995|ref|ZP_03506873.1| DNA polymerase III subunits gamma and tau [Rhizobium etli Brasil 5] Length = 228 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 17/184 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 + G E + + L+ + +GR+ A + G +G+GK T R L + D K + + Sbjct: 34 MVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTA-RILARALNYKTADVDKPTIDL 92 Query: 72 CNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P + C ++ H D + + + + TG +D+IR I + + Sbjct: 93 RAPGEHCQAIME--GRHV--DVIEMDAASH--TG-------IDDIREIIEQVRYRPVSAR 139 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC +S Sbjct: 140 YKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRIS 199 Query: 191 ENNL 194 ++L Sbjct: 200 ASDL 203 >gi|33864254|ref|NP_895814.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9313] gi|33641034|emb|CAE22163.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9313] Length = 326 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 27/184 (14%) Query: 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 GR+ A LF G G+G++ R+ ++ + P +++ + Sbjct: 29 SQGRLAPAYLFSGPDGVGRSLAALRFLEGLI------------SSGKPALRERRRLEAFN 76 Query: 89 LHDFLYLSYS------LNPKTG--------KWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 D L++ + L PK+ + + +++IR + FL ++ Sbjct: 77 HPDLLWVEPTYQHQGRLVPKSQAEEEGVNRRSPPQVRLEQIRGVTRFLGRRPVEAPRGMV 136 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I+ + M AANALLK+LEEP +L IL+S AS +L TIRSRC I F L ++ Sbjct: 137 VIEASESMPEAAANALLKTLEEPGHGLL-ILLSTASERLLKTIRSRCQQILFARLEAADM 195 Query: 195 YKAL 198 AL Sbjct: 196 QAAL 199 >gi|311896974|dbj|BAJ29382.1| putative DNA polymerase III subunit delta' [Kitasatospora setae KM-6054] Length = 401 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 14/151 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHALH 90 M HA LF G G G+ T +A + +PD V C D C H Sbjct: 43 MTHAWLFTGPPGAGQVTAARAFAAALQCTSPDLDLGGVPGCGFCDGC------------H 90 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L S++ + I V ++R + + G W VI++D + AANAL Sbjct: 91 TVLSGSHADVKQVRTDGLSIGVGDMRDLVLRAASYPTGGRWSVILVDAAHRLTEAAANAL 150 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK +EEP + +++L + + +L TIRSRC Sbjct: 151 LKGVEEPSPRTVWLLCAPSVQDVLPTIRSRC 181 >gi|23465073|ref|NP_695676.1| DNA polymerase III subunit delta' [Bifidobacterium longum NCC2705] gi|23325684|gb|AAN24312.1| possible DNA polymerase III delta prime subunit [Bifidobacterium longum NCC2705] Length = 386 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|154249108|ref|YP_001409933.1| DNA polymerase III gamma/tau subunits-like protein [Fervidobacterium nodosum Rt17-B1] gi|154153044|gb|ABS60276.1| DNA polymerase III gamma/tau subunits-like protein [Fervidobacterium nodosum Rt17-B1] Length = 272 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DEIR++ FL +N +++++ D M + AANA LK+LEEPPQ IL++ Sbjct: 48 IGIDEIRQVIDFLDFRSNDKA-KIVVVYEADKMTQEAANAFLKTLEEPPQYAKIILVTSR 106 Query: 170 SPTILSTIRSRCLSI 184 +IL TI+SR I Sbjct: 107 WSSILPTIKSRVQRI 121 >gi|46190553|ref|ZP_00121377.2| COG0470: ATPase involved in DNA replication [Bifidobacterium longum DJO10A] gi|189440136|ref|YP_001955217.1| DNA polymerase III subunit delta' [Bifidobacterium longum DJO10A] gi|189428571|gb|ACD98719.1| DNA polymerase III gamma/tau subunit [Bifidobacterium longum DJO10A] Length = 383 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|239622678|ref|ZP_04665709.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322690346|ref|YP_004219916.1| DNA polymerase III delta' subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|239514675|gb|EEQ54542.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|320455202|dbj|BAJ65824.1| DNA polymerase III delta' subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 383 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|302520696|ref|ZP_07273038.1| LOW QUALITY PROTEIN: DNA polymerase III, subunits gamma and tau [Streptomyces sp. SPB78] gi|302429591|gb|EFL01407.1| LOW QUALITY PROTEIN: DNA polymerase III, subunits gamma and tau [Streptomyces sp. SPB78] Length = 386 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LSQ + R++HA LF G +G GK T R L + Sbjct: 10 RRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 65 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 66 CEQGP----TPTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 115 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L Q+ + D V A GSV ++ ++ Sbjct: 175 HHYPFRLVPPGTLRDYLGQVCGQEDVRVEDGVLPLVVRAGAGSVRDSMSVM 225 >gi|317483376|ref|ZP_07942368.1| DNA polymerase III subunit delta [Bifidobacterium sp. 12_1_47BFAA] gi|291517601|emb|CBK71217.1| DNA polymerase III, delta prime subunit [Bifidobacterium longum subsp. longum F8] gi|316915193|gb|EFV36623.1| DNA polymerase III subunit delta [Bifidobacterium sp. 12_1_47BFAA] Length = 383 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|227876764|ref|ZP_03994873.1| possible DNA polymerase III subunit delta' [Mobiluncus mulieris ATCC 35243] gi|227842661|gb|EEJ52861.1| possible DNA polymerase III subunit delta' [Mobiluncus mulieris ATCC 35243] Length = 471 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TV V ++ R+ Y + G WRVI+++ D + ++N LLK++EEPP++ +++L + Sbjct: 172 TVAEVKDLIRVAYQRPVR---GAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLCA 228 Query: 168 HASPTILSTIRSRCLSIKF 186 ++ +L TIRSRC ++ Sbjct: 229 PSASAVLPTIRSRCRLVQL 247 >gi|306817711|ref|ZP_07451453.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus mulieris ATCC 35239] gi|304649525|gb|EFM46808.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus mulieris ATCC 35239] Length = 471 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TV V ++ R+ Y + G WRVI+++ D + ++N LLK++EEPP++ +++L + Sbjct: 172 TVAEVKDLIRVAYQRPVR---GAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLCA 228 Query: 168 HASPTILSTIRSRCLSIKF 186 ++ +L TIRSRC ++ Sbjct: 229 PSASAVLPTIRSRCRLVQL 247 >gi|41406420|ref|NP_959256.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394769|gb|AAS02639.1| DnaZX [Mycobacterium avium subsp. paratuberculosis K-10] Length = 612 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + + LS +GR++HA LF G +G GK + + + +Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C D C +A +A + G VD+ R +R Sbjct: 65 P--TATPCGVC--DSC----LALAPNAPGSIDVVELDAASHGG-------VDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAQSRHRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 170 HHYPFRLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 >gi|312114329|ref|YP_004011925.1| DNA polymerase III subunits gamma and tau [Rhodomicrobium vannielii ATCC 17100] gi|311219458|gb|ADP70826.1| DNA polymerase III, subunits gamma and tau [Rhodomicrobium vannielii ATCC 17100] Length = 574 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 28/239 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ A + G +G+GK T R L Sbjct: 24 VLARKYRPQTLDDLIGQDILVRTLRNAFAMDRIAQAYMLTGVRGVGKTTTA-RILARALN 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASH------ALH-DFLYLSYSLNPKTGKWRTVITVD 113 R PD S + ++ H + H D L + + N TG +D Sbjct: 83 YE-------RDGLPDRPSLDIAELGRHCQAIMDSRHVDVLEMDAASN--TG-------ID 126 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR I + +RV +ID V ++++A N LLK+LEEPP V FI + + Sbjct: 127 DIREIIEAVRYKPAAARYRVFIIDEVHMLSKSAFNGLLKTLEEPPPHVKFIFATTEIRKV 186 Query: 174 LSTIRSRCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 TI SRC + L + LE+ DS + AA GSV + +L Sbjct: 187 PVTILSRCQRFDLRRVEPEVLSAHFARILEKEGYAADDSALALIARAAEGSVRDGLSLL 245 >gi|78778517|ref|YP_396629.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9312] gi|78712016|gb|ABB49193.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9312] Length = 319 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 12/192 (6%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVR 70 ++LF +E++ +L + + +F G +G+GK ++ + Q+ R Sbjct: 6 KKLFFNEEVNTYLKSIIRNKSFANGYIFNGAEGVGKQQTALQFIKEIFKQSSPVGNIEER 65 Query: 71 MCN---PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + N PD F+ + L S L T +I + +IR I+ FL + Sbjct: 66 ITNNNHPD----FLIIEPNSILESKRSKSSDLEKTTKSGSEIIKIAQIRNIKTFLGQKSI 121 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++++I +N A+N LLK LEEP + FIL++ +L TI SRC ++F Sbjct: 122 NSDKKIVLIIDAHLLNEAASNCLLKILEEPNNGI-FILLTSKLNLLLDTIISRCQLVRFR 180 Query: 188 SLSE---NNLYK 196 S S N+L+K Sbjct: 181 SFSSKQINSLFK 192 >gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3] gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi DSS-3] Length = 583 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC +A + +TG V++IR I Sbjct: 71 IGPDGNGGP----TTEPCGKCEHCVAIMEGRHVDVMEMDAASRTG-------VNDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 120 DSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|269976292|ref|ZP_06183288.1| DNA polymerase III subunit delta' [Mobiluncus mulieris 28-1] gi|269935621|gb|EEZ92159.1| DNA polymerase III subunit delta' [Mobiluncus mulieris 28-1] Length = 467 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TV V ++ R+ Y + G WRVI+++ D + ++N LLK++EEPP++ +++L + Sbjct: 168 TVAEVKDLIRVAYQRPVR---GAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLCA 224 Query: 168 HASPTILSTIRSRCLSIKF 186 ++ +L TIRSRC ++ Sbjct: 225 PSASAVLPTIRSRCRLVQL 243 >gi|238762197|ref|ZP_04623169.1| DNA polymerase III subunit delta' [Yersinia kristensenii ATCC 33638] gi|238699544|gb|EEP92289.1| DNA polymerase III subunit delta' [Yersinia kristensenii ATCC 33638] Length = 307 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 Y L + GK + I V+ +R+ L A G +V+ + + + AANALLK+LEE Sbjct: 50 YVLTAEKGK--SSIGVELVRQQIEKLYSHAQQGGAKVVWLPHAEQLTDAAANALLKTLEE 107 Query: 157 PPQKVLFILISHASPTILSTIRSRC 181 PP+K F+L H ++L+T+RSRC Sbjct: 108 PPEKTYFLLDCHQPASLLATLRSRC 132 >gi|307701563|ref|ZP_07638580.1| putative DNA polymerase III, delta' subunit [Mobiluncus mulieris FB024-16] gi|307613242|gb|EFN92494.1| putative DNA polymerase III, delta' subunit [Mobiluncus mulieris FB024-16] Length = 470 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TV V ++ R+ Y + G WRVI+++ D + ++N LLK++EEPP++ +++L + Sbjct: 171 TVAEVKDLIRVAYQRPVR---GAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLCA 227 Query: 168 HASPTILSTIRSRCLSIKF 186 ++ +L TIRSRC ++ Sbjct: 228 PSASAVLPTIRSRCRLVQL 246 >gi|197250145|ref|YP_002146842.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213848|gb|ACH51245.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 334 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKA--PVRMCNPDPCSPF 80 L + Y + R HHALL + G+G L + + ++L Q P+ K+ R C Sbjct: 14 LVESYQAERGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRGCQ------- 66 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + Q +H D+ Y+L P GK + + VD +R + L + G +V+ I Sbjct: 67 LMQAGTHP--DY----YTLTPDKGK--SSLGVDAVREVSEKLYEHSRLGGAKVVWIADAA 118 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 119 LLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 159 >gi|203284658|ref|YP_002222398.1| DNA polymerase III gamma and tau subunit [Borrelia duttonii Ly] gi|201084101|gb|ACH93692.1| DNA polymerase III gamma and tau subunit [Borrelia duttonii Ly] Length = 347 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 IT+ ++R+I+Y++ N +VI I+ ++ +N N NALLK LEEPP + FIL + Sbjct: 144 ITIKDVRKIKYWVLSEKNK--IKVIYINTIENLNFNVYNALLKILEEPPSNIYFILTTRN 201 Query: 170 SPTILSTIRSRCLSIKFN 187 I TI SR KFN Sbjct: 202 KNKIPKTILSRLRIYKFN 219 >gi|255535502|ref|YP_003095873.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10] gi|255341698|gb|ACU07811.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10] Length = 367 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 31/229 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G I L ++ ALLF G +G+GK T Sbjct: 9 RKYRPQEFDTVVGQSHITDTLEHAIEENQLAQALLFCGPRGVGKTTC------------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ R N ++ S + F Y + L+ + V+EIR + + Sbjct: 56 -ARILARKIN--------ERDGSTSEDGFSYNIFELDAASNNG-----VEEIRDLTDQVR 101 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID V ++ A NA LK+LEEPP +FIL + I+ TI SRC Sbjct: 102 FAPQVGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 Query: 184 IKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ +N L ++ I D V A G++ A+ I Sbjct: 162 YDFKRITIEDIQNQLRNIADKEGIKYEDDALYMVAQKADGALRDALSIF 210 >gi|125623283|ref|YP_001031766.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. cremoris MG1363] gi|124492091|emb|CAL97020.1| DNA polymerase III [Lactococcus lactis subsp. cremoris MG1363] gi|300070034|gb|ADJ59434.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. cremoris NZ9000] Length = 286 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 18/157 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 G++ HA LF G G G L + + +NP+ S P C C V Q L Sbjct: 21 GKLSHAYLFSG--GFGSFELAIWLSQALFCENPENS-LPCGHCRS--CR-LVAQQEFADL 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + P +T +IR + S + G +V++I + M+ NAANA Sbjct: 75 H-------IVEPDGQTIKTA----QIRDLTQVFSESGYEGKQQVLLIREAEKMHPNAANA 123 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LLKS+EEP +++ L++ IL TI+SR I F Sbjct: 124 LLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF 160 >gi|114563410|ref|YP_750923.1| DNA polymerase III, delta prime subunit [Shewanella frigidimarina NCIMB 400] gi|114334703|gb|ABI72085.1| DNA polymerase III, delta prime subunit [Shewanella frigidimarina NCIMB 400] Length = 327 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 15/184 (8%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 ++F+ Q+Y G+ HA LF ++ +G L A VL PV C C Sbjct: 17 QRFVDQHY-RGKSSHAHLFNIDKALGGDKLAKAAAQTVLCQ---QLTPVGACGQ--CKSC 70 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + A + H LY+ + P + I VD+IR++ L+ TA G RV +I + Sbjct: 71 LLLAAGN--HPDLYI---IEPDGNQ----IKVDQIRQLCQALTQTAQQGGARVAIIVNAE 121 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +N AANALLK+LEEP V+ IL ++ S +L+TI SRC ++ F +++ +++ L Sbjct: 122 RLNLAAANALLKTLEEPGDDVVLILQTNTSAQLLATITSRCQTLNFVEPTKHEIHQWLAT 181 Query: 201 LKIM 204 +++ Sbjct: 182 QQLL 185 >gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] Length = 404 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 19/203 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHV 58 ++ R + P + G E I + ++ R+ HA LF G +G+GK T A + Sbjct: 5 VLARKWRPQTFDDMTGQEHIVRTIANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNC 64 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 Q P S P C C+ ++ S D + + N V+ +R I Sbjct: 65 EQGPTAS--PCGTCRA--CT----EITSGTSVDVAEIDGASNNG---------VENVREI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R ++ +ID V ++ A NALLK+LEEPP V FI + + + TI Sbjct: 108 RENAKYLPQRDRHKIYIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC F + + + L+Q+ Sbjct: 168 SRCQRHNFRRIPAARMLQRLKQI 190 >gi|260752672|ref|YP_003225565.1| DNA polymerase III subunits gamma/tau [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552035|gb|ACV74981.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 628 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 14/232 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + R L Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTA-RLIAKALN 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K DPC A + TG VD+IR I Sbjct: 72 C--VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHTG-------VDDIRDIVE 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ SR Sbjct: 123 SVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVLSR 182 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 C +S L K ++ ++ + + AA GSV + IL Sbjct: 183 CQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL 234 >gi|311745808|ref|ZP_07719593.1| DNA polymerase III gamma/tau subunit [Algoriphagus sp. PR1] gi|126576010|gb|EAZ80288.1| DNA polymerase III gamma/tau subunit [Algoriphagus sp. PR1] Length = 379 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 FV + +HDF+Y S K + I+ + +RI LSL + G +++++I V Sbjct: 108 FVLENPYGNIHDFIYYS-----GFEKKQLNISKNAAKRIIQSLSLMSFEGGYKIMLIWGV 162 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + ++ +AAN+LLK +EEPP K +F+LI+ +L+TI SR + S+ + L Sbjct: 163 EYLHPSAANSLLKIIEEPPAKTVFMLITSQPDQLLTTILSRTQKVLIRGFSDEEIVSHL- 221 Query: 200 QLKIMGWDS----KRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +G +S + V + A G++ A ++++ D+ IS Sbjct: 222 ----VGSESCDQKTAEQVSMLADGNLREANRLINKVEDEQIS 259 >gi|145596533|ref|YP_001160830.1| DNA polymerase III, delta prime subunit [Salinispora tropica CNB-440] gi|145305870|gb|ABP56452.1| DNA polymerase III, delta prime subunit [Salinispora tropica CNB-440] Length = 427 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+E+R + + T + G W+V++I+ D + A NALLK++EEPP + +F+L + + Sbjct: 130 IGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFLLCAPS 189 Query: 170 -SPTILS-TIRSRCLSIKFNSLSENNLYKAL 198 P +S TIRSRC + + + + L Sbjct: 190 IHPDDISVTIRSRCRVVPLRQPAPAAVAEVL 220 >gi|322688334|ref|YP_004208068.1| DNA polymerase III subunit delta' [Bifidobacterium longum subsp. infantis 157F] gi|320459670|dbj|BAJ70290.1| DNA polymerase III delta' subunit [Bifidobacterium longum subsp. infantis 157F] Length = 383 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLATN--------KVTIGIDQVREIITASEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|317126773|ref|YP_004093055.1| DNA polymerase III delta prime subunit [Bacillus cellulosilyticus DSM 2522] gi|315471721|gb|ADU28324.1| DNA polymerase III, delta prime subunit [Bacillus cellulosilyticus DSM 2522] Length = 328 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 14/177 (7%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L+ R+ HA LFEG +G GK + + L F + D CS Sbjct: 15 KMLTNSIKKNRLSHAYLFEGPRGTGK-----KEVANALTKSFFCQQKQGFEPCDNCSD-C 68 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++ S D + I VD+IR ++ S +V +++ + Sbjct: 69 KRIDSGNHPDVHTIKSE--------GQTIKVDQIRHLKKEFSFRGMESTKKVYLVEDAEK 120 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 M AAN++LK LEEP + L +L++ I+ TI SR + F LS+ L + L Sbjct: 121 MTIGAANSILKFLEEPDGEALAVLMTTQYQQIIKTIVSRSQVLSFAPLSQQILVEKL 177 >gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] gi|183178535|gb|ACC43645.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] Length = 633 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGK-TSSARILARSLNCAQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C + C + +A A + G VD+ R +R Sbjct: 64 GP--TATPCGTC--ESC----QALAPSAPGSIDVVELDAASHGG-------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RV +ID + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 109 RAFYAPAQSRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ ++ V A GS + +L Sbjct: 169 THHYPFRLLPPRTMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVL 220 >gi|54294286|ref|YP_126701.1| hypothetical protein lpl1351 [Legionella pneumophila str. Lens] gi|53754118|emb|CAH15591.1| hypothetical protein lpl1351 [Legionella pneumophila str. Lens] Length = 301 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I +D+IR ++ LT ++I+I+ + MN A+NALLK LEEP Q +FIL++ Sbjct: 83 IIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNTAASNALLKILEEPAQHTVFILLAQ 142 Query: 169 ASPTILSTIRSRCLSIKFNSLSE---NNL 194 I T+ SRC +F E NNL Sbjct: 143 QIGNIPPTVLSRCQMTQFAVFDELPCNNL 171 >gi|169837529|ref|ZP_02870717.1| DNA polymerase III subunits gamma and tau [candidate division TM7 single-cell isolate TM7a] Length = 136 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +DEIR ++ ++ G ++ +ID V + + A NALLK+LEEPP V+FIL + Sbjct: 8 IDEIRELKEKINYQPVKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEID 67 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I T+ SRC F + + ++ K L+ + Sbjct: 68 KIPDTVISRCQRYDFLPIDKKDIKKLLQNV 97 >gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] Length = 660 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 17/191 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ ++ A LF G +G GK + A + LQ + P Sbjct: 17 ELVGQEAIATTLTNAISLVKIAPAYLFTGPRGTGKTSSARILAKSLNCLQTGHPTPTPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DTCQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 122 YKVYVIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181 Query: 191 ENNLYKALEQL 201 + K L ++ Sbjct: 182 LEAMVKHLSKI 192 >gi|171912028|ref|ZP_02927498.1| DNA polymerase III, gamma and tau subunits [Verrucomicrobium spinosum DSM 4136] Length = 676 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 15/178 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + + L R+ HA LF G +G GK + R L P+ Sbjct: 22 RKYRPRTFEDVLGQDHVVRTLRNAIAQNRLAHAYLFVGPRGTGKTSTA-RIFAKALNCPN 80 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + DP ++ D + + N V+++R +R + Sbjct: 81 GPR-----VDFDPDDEVCVEIEKGISLDVREIDGASN---------NGVEQVRELREEVK 126 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ID V ++ A NALLK+LEEPP+ V FI + + +L TI SRC Sbjct: 127 FAPTRCRYKIYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISRC 184 >gi|297627198|ref|YP_003688961.1| DNA polymerase III, delta prime subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922963|emb|CBL57545.1| DNA polymerase III, delta prime subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 460 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 37/199 (18%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + S++ G +VI+++ D + A+ALLKSLEEPP + +++L + Sbjct: 143 IGVDEVRDLVRKASMSPTMGRHQVIVVEDADRITDRGADALLKSLEEPPARTVWVLCAPT 202 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK--------IAAYGSV 221 ++ TIRSR + + +++ + L + RD + AA G + Sbjct: 203 PDDVIVTIRSRTRQVALRTPPNSDVVRLLVE---------RDHIDRAMAEYAAKAAQGHI 253 Query: 222 ARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE 281 RA + L D +K+ ++ ++ +P + ++ +AD+L+ Sbjct: 254 GRA-RALARD-EKVRNARHAVLLVPSRLTSVGACLTVADDLVK----------------- 294 Query: 282 ICKSAKAAALSGQLEEADQ 300 A+A ++G+L+EAD+ Sbjct: 295 -AADAEADRITGRLDEADR 312 >gi|238749663|ref|ZP_04611168.1| DNA polymerase III subunit delta' [Yersinia rohdei ATCC 43380] gi|238712318|gb|EEQ04531.1| DNA polymerase III subunit delta' [Yersinia rohdei ATCC 43380] Length = 309 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 Y L P+ GK + + V+ +R+ L A G +V+ + + + AANALLK+LEE Sbjct: 50 YVLAPEKGK--SSLGVELVRQQIEKLYSHAQQGGEKVVWLPHAELLTDAAANALLKTLEE 107 Query: 157 PPQKVLFILISHASPTILSTIRSRC 181 PP K F+L H ++L+T+RSRC Sbjct: 108 PPAKTYFLLDCHQPASLLATLRSRC 132 >gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter antarcticus 238] gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter antarcticus 238] Length = 586 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAANRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC +A + +TG V +IR I Sbjct: 71 IGIDGQGGP----TTEPCGKCENCVAIMEGRHVDVMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + ++V +ID V ++ NA NALLK+LEEPP+ V FI + + T+ S Sbjct: 120 ESVHYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|318606149|emb|CBY27647.1| DNA polymerase III delta prime subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 344 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +GR HHALL G G+ L + + ++ + C+ + M + Sbjct: 29 AGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCGECHS------CRLMLAGNH 82 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D+ Y L + GK + + V+ +R+ L A G +V+ + + + AANA Sbjct: 83 PDW----YVLTLEKGK--SSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELLTDAAANA 136 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LLK+LEEPP+K F+L H ++L+T+RSRC Sbjct: 137 LLKTLEEPPEKTYFLLDCHQPASLLATLRSRC 168 >gi|296166699|ref|ZP_06849124.1| DNA-directed DNA polymerase III subunit delta' [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897964|gb|EFG77545.1| DNA-directed DNA polymerase III subunit delta' [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 406 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 15/200 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 +G M HA L G G G++ +A LQ + C C MA Sbjct: 37 AGTMTHAWLITGPPGSGRSVAALCFAA-ALQCTSAVEDGGPGCGN--CRACTTTMAGTHA 93 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + L+ I VDE+R I S TG+ ++++I+ D + AANA Sbjct: 94 DVRRVIPEGLS---------IGVDEMRAIVQIASRRPATGHRQIVVIEDADRLTEGAANA 144 Query: 150 LLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 LLK +EEPP +F+L + + I T+RSRC + + + + L + + Sbjct: 145 LLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVALVTPPTEAIARVLIDSDGLSPE 204 Query: 208 SKRDFVKIAAYGSVARAIKI 227 + D+ + G V RA ++ Sbjct: 205 TA-DWAASVSGGHVGRARRL 223 >gi|318061420|ref|ZP_07980141.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. SA3_actG] Length = 421 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LSQ + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L Q+ + D V A GSV ++ ++ Sbjct: 173 HHYPFRLVPPGTLRDYLGQVCGQEDVRVEDGVLPLVVRAGAGSVRDSMSVM 223 >gi|297528400|ref|YP_003669675.1| DNA polymerase III subunit delta' [Geobacillus sp. C56-T3] gi|297251652|gb|ADI25098.1| DNA polymerase III, delta prime subunit [Geobacillus sp. C56-T3] Length = 330 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 18/181 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L GR+ HA LFEG++G GK + A +L F +P+ + PC Sbjct: 15 VAKMLQSGLEKGRISHAYLFEGQRGTGK-----KAASLLLAKRLFCLSPIGV---SPCLE 66 Query: 80 F--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 +++ S D + P G I ++I ++ S TA ++ +++ Sbjct: 67 CRNCRRIDSGNHPDL----RVIGPDGGS----IKKEQIEWLQQEFSKTAVESDKKMYIVE 118 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 D M +AAN+LLK LEEP + +L++ +L TI SRC + F L L + Sbjct: 119 HADQMTTSAANSLLKFLEEPHPGTVAVLLTEQYHRLLGTIVSRCQVLSFRPLPPAELAQG 178 Query: 198 L 198 L Sbjct: 179 L 179 >gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] Length = 583 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P DPC A + TG V IR I Sbjct: 69 IGPDGNGGP----TTDPCGVCEHCTAIMEGRHVDVMEMDAASNTG-------VANIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ S Sbjct: 118 DSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177 Query: 180 RC 181 RC Sbjct: 178 RC 179 >gi|261866744|ref|YP_003254666.1| DNA polymerase III subunit delta' [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412076|gb|ACX81447.1| DNA polymerase III subunit delta' [Aggregatibacter actinomycetemcomitans D11S-1] Length = 327 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 ++Q + G HHALL ++G+G L A ++ P C+ + + Q Sbjct: 15 ITQAFEEGLGHHALLIRADEGLGAEQLCRLLAQRLMCLTPKGAEPCGECH----ACHLMQ 70 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH DF +++ N G VD+IR + S A +VI I+ + Sbjct: 71 ANSHP--DFQHIAPIENKDIG-------VDQIRAMNEQASQHAQQNGNKVIYIEQAHRLT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANA+LK+LEEP FIL + +L TI SRC Sbjct: 122 EAAANAILKTLEEPRPNTYFILQNDMQKALLPTIYSRC 159 >gi|295837600|ref|ZP_06824533.1| DNA polymerase III, subunit gamma and tau [Streptomyces sp. SPB74] gi|295826587|gb|EDY42974.2| DNA polymerase III, subunit gamma and tau [Streptomyces sp. SPB74] Length = 412 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LSQ + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 74 CEQGP----TPTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L Q+ + D V A GSV ++ ++ Sbjct: 183 HHYPFRLVPPGTLRDYLGQVCGQEDVRVEDGVLPLVVRAGAGSVRDSMSVM 233 >gi|251781218|ref|ZP_04824134.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081665|gb|EES47726.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 544 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 8 REWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + N +PC+ K++ D L + N G R +D+ + Sbjct: 63 ---NCFNLQNGEPCNECEMCKKINEGLSMDVTELDAASN--NGIDRIRDIIDDTK----- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 113 --YPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +++ + L K E + D D + A G++ ++ IL Sbjct: 171 QRFDFKRINQKDISDRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSIL 221 >gi|182677255|ref|YP_001831401.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica subsp. indica ATCC 9039] gi|182633138|gb|ACB93912.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica subsp. indica ATCC 9039] Length = 651 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 7/182 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + K LS + R+H A L G +G+GK T +L Sbjct: 31 VLARKYRPSRFEDLIGQEAMVKTLSNAFDLDRIHQAYLLTGVRGVGKTT-----TARILA 85 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P P P V M +H + S ++ + +D+IR I Sbjct: 86 RAFNYEVPAENGQPAIEKPTV-HMDRFGVHCQAIIESRHVDIIEMDAASHTGIDDIREII 144 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +V +ID V +++ A N LLK+LEEPP+ V FI + + T+RS Sbjct: 145 ESARYRPVSARVKVYIIDEVHMLSKQAFNGLLKTLEEPPEHVKFIFATTEIDKVPITVRS 204 Query: 180 RC 181 RC Sbjct: 205 RC 206 >gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum ATCC 11170] gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170] Length = 659 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 36/293 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+ A + G +G+GK T A + Sbjct: 40 VLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARALNC 99 Query: 61 NPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K V + PC K +A D L + + G R ++ D +R Sbjct: 100 VGADGKGGVTIT---PCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREIL--DGVR-- 152 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + A T +V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 153 --YRPAVART---KVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVL 207 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWD------SKRDFVKIAAYGSVARAIKILHYDC 232 SRC +S L L+I G + S + AA GSV + +L Sbjct: 208 SRCQRFDLRRVSAAELSGHF--LRIAGLEGAEIAPSALTLIARAADGSVRDGLSLL---- 261 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 D+ I+ + Q+A+ L D+ FD L + I +S Sbjct: 262 DQAIAHGGGTV----------SEAQVAEMLGLADRARIFDLLDALLAGRIAES 304 >gi|126733475|ref|ZP_01749222.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2] gi|126716341|gb|EBA13205.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2] Length = 612 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P + G + + + L + + R+ A + G +G GK T A G Sbjct: 40 VLARKYRPETFADMVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 99 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC +A + +TG V +IR I Sbjct: 100 IGPDGTGGPTT----EPCGQCEHCVAIMEGRHVDVMEMDAASRTG-------VGDIREII 148 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V +++NA NALLK+LEEPP+ V FI + + T+ S Sbjct: 149 DSVHYRAASARFKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLS 208 Query: 180 RC 181 RC Sbjct: 209 RC 210 >gi|318081362|ref|ZP_07988694.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. SA3_actF] Length = 412 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LSQ + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L Q+ + D V A GSV ++ ++ Sbjct: 173 HHYPFRLVPPGTLRDYLGQVCGQEDVRVEDGVLPLVVRAGAGSVRDSMSVM 223 >gi|305431808|ref|ZP_07400975.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli JV20] gi|304444892|gb|EFM37538.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli JV20] Length = 518 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 36/285 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPVRMCNPD--PCSPFVKQMAS-HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +A V P PC + +A+ H D + + + N + +I + +Y Sbjct: 59 RALVCDNGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALI-----EQTKY- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 ---TPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F + +N + L+++ + + FV + GS+ + +L C Sbjct: 170 QHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQN 229 Query: 235 IISS--YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 IS+ D++ K+++ +L++++ FDFL E Sbjct: 230 DISTSKITDMLGF----LDPAKIKEFYHAILTKNKDRVFDFLEEL 270 >gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45] gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45] Length = 588 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + +GR+ A + G +G GK T A G Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 60 QNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC K + D + + + N TG V +IR Sbjct: 70 IGPDGEGGPTT----EPCGVCEHCKAIMEGRHVDVMEMDAASN--TG-------VGDIRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 176 Query: 178 RSRC 181 SRC Sbjct: 177 LSRC 180 >gi|258650990|ref|YP_003200146.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] gi|258554215|gb|ACV77157.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] Length = 412 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 21/197 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA LF G G G+ ++ R LQ D R C CS + +A+H D Sbjct: 49 MTHAWLFTGPAGSGR-SVAARAFAAALQCAD------RGCGH--CS-HCRTVAAHTHSDV 98 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 ++ P+ I+V E+R++ + + G +++++I+ D + A+NALLK Sbjct: 99 ----RAVIPEG----LTISVKEMRQVVQLAARSPAAGRYQIVLIEDADRLTEGASNALLK 150 Query: 153 SLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 ++EEP + +F+L + ++ P +S TIRSRC + + S + L + + ++ Sbjct: 151 AVEEPAEHTVFLLCAPSTHPDDVSVTIRSRCRVVGLRTPSAPAIADVLARRDGVDPETAH 210 Query: 211 DFVKIAAYGSVARAIKI 227 +AA G V RA ++ Sbjct: 211 WAASVAA-GHVGRARRL 226 >gi|238855357|ref|ZP_04645669.1| DNA replication ATPase [Lactobacillus jensenii 269-3] gi|260664927|ref|ZP_05865778.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii SJ-7A-US] gi|282934587|ref|ZP_06339834.1| DNA replication ATPase [Lactobacillus jensenii 208-1] gi|313472527|ref|ZP_07813017.1| DNA-directed DNA polymerase III, delta subunit [Lactobacillus jensenii 1153] gi|238832018|gb|EEQ24343.1| DNA replication ATPase [Lactobacillus jensenii 269-3] gi|239529961|gb|EEQ68962.1| DNA-directed DNA polymerase III, delta subunit [Lactobacillus jensenii 1153] gi|260561410|gb|EEX27383.1| DNA polymerase III, delta' subunit [Lactobacillus jensenii SJ-7A-US] gi|281301339|gb|EFA93636.1| DNA replication ATPase [Lactobacillus jensenii 208-1] Length = 282 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +++D+IR ++ L+ + G R I+ + AANALL LEEP V IL+++ Sbjct: 86 LSIDQIRPLKEELAKSPVEGNRRFFFIENAQTLTMPAANALLNLLEEPVAPVTTILLTNN 145 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 + IL T+RSR I+FN L++ N + L + G+ S+ D + + +A+K Sbjct: 146 AQQILPTVRSRTQIIEFNDLAQAN--SKSQDLLLYGF-SQEDLENLGETAELDKAVK 199 >gi|57168040|ref|ZP_00367179.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter coli RM2228] gi|57020414|gb|EAL57083.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter coli RM2228] Length = 518 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 36/285 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPVRMCNPD--PCSPFVKQMAS-HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +A V P PC + +A+ H D + + + N + +I + +Y Sbjct: 59 RALVCDNGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALI-----EQTKY- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 ---TPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F + +N + L+++ + + FV + GS+ + +L C Sbjct: 170 QHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQN 229 Query: 235 IISS--YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 IS+ D++ K+++ +L++++ FDFL E Sbjct: 230 DISTSKITDMLGF----LDPAKIKEFYHAILTKNKDRVFDFLEEL 270 >gi|256831655|ref|YP_003160382.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans DSM 20603] gi|256685186|gb|ACV08079.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans DSM 20603] Length = 872 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 25/233 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + L Q S R++HA LF G +G GK T R +L + S N Sbjct: 17 MIGQEHVTGPLMQALRSNRVNHAYLFSGPRGCGK-TTSARVLARILNCAENSPE-----N 70 Query: 74 P--DPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 P PC P +++A + G VD+ R +R + + + Sbjct: 71 PRDTPCGQCPSCQELARGGAGSLDVVEIDAASHGG-------VDDARELRERATFSPSRD 123 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++ ++D + NALLK +EEPP + FI + ++ TIRSR F + Sbjct: 124 RYKIFILDEAHMVTAQGFNALLKIVEEPPPYLKFIFATTEPDKVIGTIRSRTHHYPFKLV 183 Query: 190 SENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + + + QL I + V A GSV + +L D++I+ Sbjct: 184 APDTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVL----DQLIAG 232 >gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] Length = 646 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 19/233 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + GR+ A + G +G+GK T R L Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTA-RILARALN 70 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + D + + D Q+ D + + + TG +D+IR I Sbjct: 71 YKTKDIDQPTTVL---DSLGEHCTQIIEGRHIDVIEMDAA--SHTG-------IDDIREI 118 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI Sbjct: 119 IEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITIL 178 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC + L L Q+ K+ D + AA GS A+ I Sbjct: 179 SRCQRFDLRRIESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSI 231 >gi|161611320|ref|YP_162596.2| DNA polymerase III subunits gamma and tau [Zymomonas mobilis subsp. mobilis ZM4] gi|283775348|gb|AAV89485.2| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ZM4] Length = 628 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 18/234 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + R L Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTA-RLIAKALN 71 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K DPC + +A D + + + + TG VD+IR I Sbjct: 72 C--VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASH--TG-------VDDIRDI 120 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ Sbjct: 121 VESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVL 180 Query: 179 SRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC +S L K ++ ++ + + AA GSV + IL Sbjct: 181 SRCQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL 234 >gi|254386208|ref|ZP_05001519.1| DNA polymerase III subunit delta [Streptomyces sp. Mg1] gi|194345064|gb|EDX26030.1| DNA polymerase III subunit delta [Streptomyces sp. Mg1] Length = 403 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ-----M 84 + +M HA LF G G G++T +A LQ +P R +P F + Sbjct: 40 ASKMTHAWLFTGPPGSGRSTAARAFA-AALQ----CTSPDRALGGEPGCGFCDGCHTTLI 94 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 +HA D + L I V E R + L+ G W+VI+++ D + Sbjct: 95 GTHA--DVEIVRTDL--------LSIGVKETRDLVRRAQLSPAVGRWQVIVLEDADRLTE 144 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 A N LLK++EEP + +++L + + +L TIRSRC + + Sbjct: 145 GAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLTLRT 188 >gi|283783707|ref|YP_003374461.1| DNA polymerase III, delta' subunit family protein [Gardnerella vaginalis 409-05] gi|298252463|ref|ZP_06976258.1| DNA polymerase III subunit gamma/tau [Gardnerella vaginalis 5-1] gi|283441202|gb|ADB13668.1| DNA polymerase III, delta' subunit family protein [Gardnerella vaginalis 409-05] gi|297533353|gb|EFH72236.1| DNA polymerase III subunit gamma/tau [Gardnerella vaginalis 5-1] Length = 392 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G E + L C+ ++ + L G G G + R L++PD + + Sbjct: 7 VIGQEQVVSRLRNIACADASKIAQSWLICGSAGFG-SAQVARAFAAALESPDHGEGSDGI 65 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 S K++ + + D ++L K +++D++R +T W Sbjct: 66 SGEGELSKTTKEVLAGSHPDV----HTLATKG----VTLSIDDVREAIGISEQMPSTAPW 117 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 R+I+I+ VD M + N LLK +EEP + +++L + + +L TIRSR ++ + +E Sbjct: 118 RIIIIEDVDRMLERSTNVLLKEIEEPSEHTIWLLCASSVMDVLPTIRSRTQLVQLATPNE 177 Query: 192 NNLYKAL 198 ++ + L Sbjct: 178 QSIAEYL 184 >gi|227545646|ref|ZP_03975695.1| DNA polymerase III subunit delta' [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213762|gb|EEI81601.1| DNA polymerase III subunit delta' [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 383 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLDRTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|15672381|ref|NP_266555.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. lactis Il1403] gi|12723272|gb|AAK04497.1|AE006276_12 DNA polymerase III, delta subunit [Lactococcus lactis subsp. lactis Il1403] gi|326405975|gb|ADZ63046.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. lactis CV56] Length = 286 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 22/159 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCS--PFVKQMASH 87 G++ HA LF G G G L + + +NP+ N PC + +A Sbjct: 21 GKLSHAYLFSG--GFGSFELAIWLSQALFCENPE---------NALPCGHCRSCRLVAQQ 69 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D + + P +T +IR + + + G +V++I + M+ NAA Sbjct: 70 EFTDL----HIVEPDGQTIKTA----QIRELTQVFNESGYEGNQQVLLIKEAEKMHPNAA 121 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 NALLKS+EEP +++ L++ IL TI+SR I F Sbjct: 122 NALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF 160 >gi|227874253|ref|ZP_03992452.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227839922|gb|EEJ50353.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 310 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D +++ Y + G+ ++ I++D+IR+ ++ + ++ G ++V ++ D M A NA Sbjct: 86 DLIFVDYQ-EKENGEKKSSISIDQIRQEVKGTVDISPKEGQYKVYVLCHSDKMTVEAQNA 144 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LLK+LEE P+ V+ IL+ +L T+ SR + + + +K L+++ Sbjct: 145 LLKTLEEAPEHVIMILLCENENKLLDTVLSRVVRVYVGDMPIEKQWKLLQEI 196 >gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414] gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414] Length = 650 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 17/176 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ + ++ A LF G +G GK + A + L + + P Sbjct: 17 ELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDQPTAEPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DVCQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V ++D ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F Sbjct: 122 YKVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDF 177 >gi|58696927|ref|ZP_00372426.1| DNA polymerase III delta prime chain [Wolbachia endosymbiont of Drosophila simulans] gi|58536841|gb|EAL60053.1| DNA polymerase III delta prime chain [Wolbachia endosymbiont of Drosophila simulans] Length = 198 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 46/82 (56%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I ++++R ++ FL L+ ++ +ID ++ M NA NA+LK LEEPP+ +ISH Sbjct: 63 TIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISH 122 Query: 169 ASPTILSTIRSRCLSIKFNSLS 190 I +TI RC + L+ Sbjct: 123 KPYDIQTTILCRCFQLNLLPLT 144 >gi|315644347|ref|ZP_07897487.1| DNA polymerase III, delta prime subunit [Paenibacillus vortex V453] gi|315280224|gb|EFU43516.1| DNA polymerase III, delta prime subunit [Paenibacillus vortex V453] Length = 328 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 17/186 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E ++ L + HA LF G G G+ +A + Sbjct: 6 IVGQETAKQLLQNALRRHAVSHAYLFSGPNGAGQMQTALTFAKALF---------CTELE 56 Query: 74 PDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D C ++ + H H L + + P I +D+IR ++ S + + Sbjct: 57 DDACGHCLECRKVDHGNHPDLTM---VEPDGAS----IKIDQIRDLQRIFSYRSENRNPK 109 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID + M AAN+LLK LEEP + ILI+ +L TI+SR + F +L Sbjct: 110 VYIIDRAEKMTTQAANSLLKFLEEPQSPAVAILIAENGQALLPTIQSRSQQVPFRALDPQ 169 Query: 193 NLYKAL 198 + K L Sbjct: 170 MMEKVL 175 >gi|54297310|ref|YP_123679.1| hypothetical protein lpp1355 [Legionella pneumophila str. Paris] gi|53751095|emb|CAH12506.1| hypothetical protein lpp1355 [Legionella pneumophila str. Paris] Length = 301 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I +D+IR ++ LT ++I+I+ + MN A+NALLK LEEP Q +FIL++ Sbjct: 83 IIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQ 142 Query: 169 ASPTILSTIRSRCLSIK---FNSLSENNL 194 I T+ SRC + F+ L NNL Sbjct: 143 QIGNIPPTVLSRCQMTQFAVFDELPYNNL 171 >gi|312133480|ref|YP_004000819.1| dnax1 [Bifidobacterium longum subsp. longum BBMN68] gi|311772717|gb|ADQ02205.1| DnaX1 [Bifidobacterium longum subsp. longum BBMN68] Length = 383 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Query: 14 LFGHEDIEKFLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPV 69 L G + + LS+ ++ + L G G G++ + +A L++PD S P Sbjct: 7 LVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAA-ALESPDHGMSAEPT 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ +Q+ + D L+ + + I +D++R I T Sbjct: 66 RVT---------QQVLAGTHPDVTVLTTN--------KVTIGIDQVREIITTSEQMPATA 108 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 WR+I+I+ VD M N LLK +EEP + +++L + ++ +L TIRSR Sbjct: 109 PWRIIIIEDVDRMLDRTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRT 160 >gi|92116083|ref|YP_575812.1| DNA polymerase III subunits gamma and tau [Nitrobacter hamburgensis X14] gi|91798977|gb|ABE61352.1| DNA polymerase III, subunits gamma and tau [Nitrobacter hamburgensis X14] Length = 615 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 25/230 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 35 VLARKYRPASFDDLIGQEALVRTVSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 93 Query: 60 -QNPDFS-KAP-VRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + PD S K P +RM P Q + H D L + + + TG VD++ Sbjct: 94 YELPDGSVKGPTIRM----PKLGVHCQAIMESRHIDVLEMDAASH--TG-------VDDV 140 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R+I + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + + Sbjct: 141 RQINDSVRYAPSSARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPV 200 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-VKIAAYGSVARA 224 T+ SRC + + L L + +K + V+ A G VARA Sbjct: 201 TVLSRCQRFDLKRVDADVLVTHLGNIA-----AKENVEVEPEALGIVARA 245 >gi|117929223|ref|YP_873774.1| DNA polymerase III, subunits gamma and tau [Acidothermus cellulolyticus 11B] gi|117649686|gb|ABK53788.1| DNA polymerase III, subunits gamma and tau [Acidothermus cellulolyticus 11B] Length = 637 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 25/241 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L Q R+HHA LF G +G GK T R L + Sbjct: 7 RKYRPATFAEVIGQEHVTEPLRQALRHNRVHHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P PDPC + +A + + G VD+ R +R Sbjct: 63 CEQGP----TPDPCGVCQSCRDLAPSGPGNVDVIEIDAASHGG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID + NALLK +EEPP + F+ + +L TI+SR Sbjct: 112 SFYAPAVSRFKVYIIDEAHMVTAAGFNALLKLVEEPPPHLKFVFATTEPDKVLPTIKSRT 171 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L EQ K+ + V A GSV A+ IL D++I+ Sbjct: 172 HHYPFRLVPPAVLRQHLAHICEQEKVAIEPGALNLVVRAGAGSVRDALSIL----DQLIA 227 Query: 238 S 238 Sbjct: 228 G 228 >gi|313679193|ref|YP_004056932.1| DNA polymerase III subunit delta [Oceanithermus profundus DSM 14977] gi|313151908|gb|ADR35759.1| DNA polymerase III, delta prime subunit [Oceanithermus profundus DSM 14977] Length = 307 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 ++ GHE +FL++ + +LLF G +G+G+ T+ +A + F Sbjct: 3 QVIGHERQRRFLAR-----KPAQSLLFVGPEGVGRRTVARWFAYGLNCERGFP------- 50 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKW--RTVITVDEI--------RRIRYFL 122 PC H F +L KTG+ R I +D+I + +L Sbjct: 51 ---PCGACASCRLQHHPDLFEVAPRTLT-KTGQTARRPQIHLDQIAPRAGSEEESLLEWL 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + TA +V ++D + A NALLK LEEPP ILI+ + +L T+ SR L Sbjct: 107 A-TAPRHRAKVGVVDSAHLLGEPAGNALLKMLEEPPAHAYLILIAPSREAVLPTLASRSL 165 Query: 183 SIKFNSLSENNLYK 196 ++ F L E+ L + Sbjct: 166 TVGFGPLPEDELRR 179 >gi|269468274|gb|EEZ79958.1| DNA polymerase III, delta prime subunit [uncultured SUP05 cluster bacterium] Length = 344 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 18/171 (10%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L Q + HALL G + +GK L + +L + V C K Sbjct: 13 LKQMIDQNHLPHALLITGSEQMGKFELMQQLVKTLLCEEETCDQCVL------CRAISKD 66 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVIT----------VDEIRRIRYFLSLTANTGYWRV 133 AL D + + S P RT + +D+IR L+ TA+ V Sbjct: 67 NPKQALDDSVLIRRSHYPNMVYCRTEVNDKGVESKNIRIDQIRAFCEALNKTADNLQIGV 126 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + D MN +AAN+LLK+LEEP + L IL++H + +TI SRC S+ Sbjct: 127 LFY--ADQMNISAANSLLKTLEEPRENTLIILLAHDPKNLPATILSRCQSV 175 >gi|284989207|ref|YP_003407761.1| DNA polymerase III, delta prime subunit [Geodermatophilus obscurus DSM 43160] gi|284062452|gb|ADB73390.1| DNA polymerase III, delta prime subunit [Geodermatophilus obscurus DSM 43160] Length = 386 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 20/158 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA LF G G G+ ++ R LQ PD C HA Sbjct: 28 MTHAWLFTGPPGSGR-SVAARAFAAALQCPDGGDG---TC--------------HACRTV 69 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L +++ I V E+R + + G W+V++++ D M A+N +LK Sbjct: 70 LAGTHADVQTVVPEGLSIGVAEVRELVRIAGRAPSQGRWQVVLVEDADRMTEQASNTVLK 129 Query: 153 SLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNS 188 LEEPP + +F+L + + + TIRSRC + + Sbjct: 130 MLEEPPARTVFLLCAPSLHPDDVPVTIRSRCRVVGLRT 167 >gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413] gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413] Length = 650 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ + ++ A LF G +G GK + A + L + + P Sbjct: 17 ELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTAEPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DVCQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 122 YKVYVIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181 Query: 191 ENNLYKAL 198 + K L Sbjct: 182 LEAMVKHL 189 >gi|148543569|ref|YP_001270939.1| DNA polymerase III subunit delta' [Lactobacillus reuteri DSM 20016] gi|184152976|ref|YP_001841317.1| DNA polymerase III subunit delta' [Lactobacillus reuteri JCM 1112] gi|227363471|ref|ZP_03847593.1| DNA polymerase III subunit delta [Lactobacillus reuteri MM2-3] gi|325681919|ref|ZP_08161437.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus reuteri MM4-1A] gi|148530603|gb|ABQ82602.1| DNA polymerase III, delta prime subunit [Lactobacillus reuteri DSM 20016] gi|183224320|dbj|BAG24837.1| DNA polymerase III delta subunit [Lactobacillus reuteri JCM 1112] gi|227071485|gb|EEI09786.1| DNA polymerase III subunit delta [Lactobacillus reuteri MM2-3] gi|324978563|gb|EGC15512.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus reuteri MM4-1A] Length = 337 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 18/183 (9%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 +K LS + + HA LF G G GK ++ + + F P + PD Sbjct: 21 QKILS----NNELAHAYLFVGPGGSGKMSIAQWLSLRL-----FCLHP-QDNEPDLTCAE 70 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 +++ S D +Y + P+ + I VDEIRR++ S +A G ++ +I D Sbjct: 71 CQRILSGNHPDIVYAA----PEGRQ----IKVDEIRRLKAEFSKSAVEGNKKIFIIKDAD 122 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M AAN+LLK +EEP V +++ +L TIRSR I+ L + L L + Sbjct: 123 KMTNGAANSLLKFIEEPGAGVYIFMLTTNKSAVLPTIRSRTQVIELPPLKRDALLTVLTE 182 Query: 201 LKI 203 I Sbjct: 183 HNI 185 >gi|317503790|ref|ZP_07961802.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] gi|315665087|gb|EFV04742.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] Length = 382 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 36/250 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA----PV 69 + G E+ + L R+ + L+ G G GK L +A ++L D + P Sbjct: 6 VIGQEEAKNRLRDLVKEHRIPNTLMLCGPAGSGKMALALAFASYLLGERDGETSLLSDPR 65 Query: 70 RMCN----------PDP--CSPFVKQMASHALH-----DFLYLSYSLNPKT-----GKW- 106 + N PD P +K + H DF+ ++ K+ W Sbjct: 66 AIANAEAMLAKWEHPDLHFTFPVIKPTGTSPDHKMSSDDFISRWNAMLLKSPYFTMDSWL 125 Query: 107 --------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + +I E + LSL ++ G ++V +I + MN AN LLK LEEPP Sbjct: 126 SAMEAANQQAIIGAGESDELIKKLSLKSSQGGYKVSIIWLPERMNVECANKLLKLLEEPP 185 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 + +FI++ +L TI+SR I + + ++ +AL + + + + +IA+ Sbjct: 186 HQTIFIMVCEEPELLLDTIKSRTQRIDIKRIDDADIEQALIERRAIDTEHAHRIARIAS- 244 Query: 219 GSVARAIKIL 228 G+ RA++ L Sbjct: 245 GNWLRALENL 254 >gi|261417525|ref|YP_003251207.1| DNA polymerase III subunit delta' [Geobacillus sp. Y412MC61] gi|319765182|ref|YP_004130683.1| DNA polymerase III delta prime subunit [Geobacillus sp. Y412MC52] gi|261373982|gb|ACX76725.1| DNA polymerase III, delta prime subunit [Geobacillus sp. Y412MC61] gi|317110048|gb|ADU92540.1| DNA polymerase III, delta prime subunit [Geobacillus sp. Y412MC52] Length = 330 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 18/181 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L GR+ HA LFEG++G GK + A +L F +P+ + PC Sbjct: 15 VAKMLQSGLEKGRISHAYLFEGQRGTGK-----KAASLLLAKRLFCLSPIGV---SPCLE 66 Query: 80 F--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 +++ S D + P G I ++I ++ S TA ++ +++ Sbjct: 67 CRNCRRIDSGNHPDV----RVIGPDGGS----IKKEQIEWLQQEFSKTAVESDKKMYIVE 118 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 D M +AAN+LLK LEEP + +L++ +L TI SRC + F L L + Sbjct: 119 HADQMTTSAANSLLKFLEEPHPGTVAVLLTEQYHRLLGTIVSRCQVLSFRPLPPAELAQG 178 Query: 198 L 198 L Sbjct: 179 L 179 >gi|154486550|ref|ZP_02027957.1| hypothetical protein BIFADO_00365 [Bifidobacterium adolescentis L2-32] gi|154084413|gb|EDN83458.1| hypothetical protein BIFADO_00365 [Bifidobacterium adolescentis L2-32] Length = 382 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD N +P +Q+ + D Sbjct: 28 IAQSWLICGPPGSGRSNVARAFAA-ALESPDHG------LNDEPTK-TTEQVLAGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I +DE+R I T WR+I+I+ VD M N LLK Sbjct: 80 SVLATN--------KVTIGIDEVRDIITTSEQMPGTAPWRIIIIEDVDRMMERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +EEP +++L + ++ +L TIRSR + S + K LE Sbjct: 132 EIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSNQAVAKFLE 178 >gi|123967683|ref|YP_001008541.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. AS9601] gi|123197793|gb|ABM69434.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. AS9601] Length = 320 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 1/192 (0%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 V F +E++ L+ + + +F G +G+GK ++ + + SK Sbjct: 4 VKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPSKNL 63 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 + F+ L L KT +I + +IR I+ FLS + Sbjct: 64 EEKIKNNNHPDFLIIEPDSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQKSIN 123 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 ++++I +N A+N LLK+LEEP + FIL++ +L TI SRC ++F S Sbjct: 124 SEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGI-FILLTSKLNLLLDTIISRCQIVRFRS 182 Query: 189 LSENNLYKALEQ 200 S + L++ Sbjct: 183 FSSQQIKSILKE 194 >gi|17232424|ref|NP_488972.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] Length = 655 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ + ++ A LF G +G GK + A + L + + P Sbjct: 17 ELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTAEPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DVCQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 122 YKVYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181 Query: 191 ENNLYKAL 198 + K L Sbjct: 182 LEAMVKHL 189 >gi|306817441|ref|ZP_07451186.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus mulieris ATCC 35239] gi|304649882|gb|EFM47162.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus mulieris ATCC 35239] Length = 725 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 33/256 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L +GR++HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTT-SARIMARCL---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P P PC + +A+ + G VD+ R +R Sbjct: 63 CAEGP----TPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKAL------EQLKI----------MGWDSKRDFVKIAAYGSVARAI 225 F ++ L L E + + G S RD + I A Sbjct: 172 HHYPFRLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAE 231 Query: 226 KILHYDCDKIISSYID 241 ILHYD + Y D Sbjct: 232 PILHYDRAVALLGYTD 247 >gi|307610104|emb|CBW99645.1| hypothetical protein LPW_14131 [Legionella pneumophila 130b] Length = 301 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K K +I +D+IR ++ LT ++I+I+ + MN A+NALLK LEEP Q Sbjct: 76 KPEKSGGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHT 135 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSE---NNL 194 +FIL++ I T+ SRC +F E NNL Sbjct: 136 VFILLAQQIGNIPPTVLSRCQMTQFAVFDELPCNNL 171 >gi|111220099|ref|YP_710893.1| DNA polymerase III subunits gamma and tau [Frankia alni ACN14a] gi|111147631|emb|CAJ59286.1| DNA polymerase III subunit gamma (partial match) [Frankia alni ACN14a] Length = 1016 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 23/240 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G E + L + +GR+HHA LF G +G GK + A + + Sbjct: 9 YRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAASLNCEQGPT 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P +C D C ++ AS + + S+ L VD+ R +R Sbjct: 69 PEPCGVC--DECV-GIRTGASMDVTEIDAASHGL------------VDDARDLRERAFFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V ++D + A NALLK +EEPP + F+ + ++ TIRSR Sbjct: 114 PASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRTHHYA 173 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F + L L EQ + + V A GSV ++ +L D++++ D Sbjct: 174 FRLVPPGVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVL----DQLLAGADD 229 >gi|237784776|ref|YP_002905481.1| DNA polymerase III subunits gamma and tau [Corynebacterium kroppenstedtii DSM 44385] gi|237757688|gb|ACR16938.1| DNA polymerase III, gamma and tau subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 990 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G E + LS+ +GR++HA LF G +G GK + + + + Sbjct: 5 RKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLNCVHG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A G V+++R +R Sbjct: 65 P--TSTPCGECE------SCRALAPGGPGSLDVTELDAASHRG-------VEDMRDLRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + + NALLK +EEPP+ ++FI + +L+TI+SR Sbjct: 110 AIYAPAESRYRVFIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L+ N++ LE++ K+ DS V A GS ++ +L Sbjct: 170 HQYPFRLLAPNDMRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVL 220 >gi|225630532|ref|YP_002727323.1| DNA polymerase III, delta' subunit, putative [Wolbachia sp. wRi] gi|225592513|gb|ACN95532.1| DNA polymerase III, delta' subunit, putative [Wolbachia sp. wRi] Length = 273 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 32/153 (20%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G++GIGKATL ++ +L + ++ ++ Sbjct: 24 LICGKKGIGKATLAKSFSNWLL-----------------------------IKNYNEVAL 54 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 L+ G I ++++R ++ FL L+ ++ +ID ++ M NA NA+LK LEEP Sbjct: 55 DLHIVEG---DTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEP 111 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P+ +ISH I +TI RC + L+ Sbjct: 112 PKNSKIFIISHKPYDIQTTILCRCFQLNLLPLT 144 >gi|311065066|ref|YP_003971792.1| DNA polymerase III subunit delta' [Bifidobacterium bifidum PRL2010] gi|310867386|gb|ADP36755.1| DNA polymerase III, delta' subunit [Bifidobacterium bifidum PRL2010] Length = 394 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 19/159 (11%) Query: 26 QYYCSG---RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 Q SG + + L G G G++ + +A L++PD R + +P + + Sbjct: 18 QAIVSGDPKTLAQSWLICGPPGSGRSNVARAFAA-ALESPD------RGLSDEPTN-ITR 69 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 Q+ S D L+ + + I +D++R++ +T WR+I+I+ VD M Sbjct: 70 QVLSGTHPDVTTLATN--------KVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDRM 121 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N LLK +EEP +++L + ++ +L TIRSR Sbjct: 122 LERTTNVLLKEIEEPSPHTIWLLCAPSAQDVLPTIRSRT 160 >gi|309792828|ref|ZP_07687270.1| DNA polymerase III, delta prime subunit [Oscillochloris trichoides DG6] gi|308225140|gb|EFO78926.1| DNA polymerase III, delta prime subunit [Oscillochloris trichoides DG6] Length = 338 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 11/215 (5%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH L +G HA LF G G+GKA L + A L P + C Sbjct: 5 ITGHAWAVHQLQHSIQAGTDAHAYLFSGPAGLGKALLALQMA-QALNCEVTPGVPCQECR 63 Query: 74 PDPCSPFVKQMASHA---LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C + +H + +L + + + IR + +SL Sbjct: 64 S--CRRIAR--GNHPDVRIAGMASQGAALKADEAARQKELKIATIREWQRDISLRPYEAR 119 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 RV+++ + +N ++NA+LK+LEEPP IL+++ S +L TI SRC ++ L Sbjct: 120 RRVLILHDAERLNEESSNAMLKTLEEPPDYATIILVAN-STDLLPTIVSRCRVLRLRPLP 178 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 + AL I+ ++ + + +YG + A+ Sbjct: 179 RRQVADALIARHIVA--AEAEMLAAWSYGRIGWAL 211 >gi|307700496|ref|ZP_07637532.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris FB024-16] gi|307614303|gb|EFN93536.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris FB024-16] Length = 724 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 33/256 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L +GR++HA LF G +G GK T R L + Sbjct: 6 RRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTT-SARIMARCL---N 61 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P P PC + +A+ + G VD+ R +R Sbjct: 62 CAEGP----TPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGG-------VDDARELRER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 111 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 170 Query: 182 LSIKFNSLSENNLYKAL------EQLKI----------MGWDSKRDFVKIAAYGSVARAI 225 F ++ L L E + + G S RD + I A Sbjct: 171 HHYPFRLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAE 230 Query: 226 KILHYDCDKIISSYID 241 ILHYD + Y D Sbjct: 231 PILHYDRAVALLGYTD 246 >gi|320010006|gb|ADW04856.1| DNA polymerase III, delta prime subunit [Streptomyces flavogriseus ATCC 33331] Length = 444 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 21/269 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCN-PDPCSPFVKQMASHAL 89 +M HA LF G G G+AT +A + +PD + C D C + +HA Sbjct: 85 KMTHAWLFTGPPGSGRATAARAFAAALQCTSPDRAMGGAPGCGFCDGC--HTALIGTHA- 141 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + L I V E R + L+ G W+VI+++ D + A N Sbjct: 142 -DVEVIRTDL--------LSIGVKETRELVRRAQLSPAVGRWQVIVMEDADRLTEGAGNV 192 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 LLK++EEP + +++L S + +L TIRSRC + + + L ++ G D + Sbjct: 193 LLKAVEEPAPRTVWLLCSPSLEDVLPTIRSRCRHLTLRTPPVEAVADVL--IRRDGIDPE 250 Query: 210 RDFVKI-AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 R A G + RA ++ + + + + + +P + + + + A EL+ Sbjct: 251 RAASAARATQGHIGRARRLATDERARARRAAV--LKLPLRVHDVGGCLKSAQELIDTATD 308 Query: 269 IAFDFLIEFILKEI--CKSAKAAALSGQL 295 A E +KE K+A A G++ Sbjct: 309 DAKQVAEEIDVKETDDLKAALGAVAGGRM 337 >gi|241762403|ref|ZP_04760482.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373090|gb|EER62739.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 628 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 18/234 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + R L Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTA-RLIAKALN 71 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K DPC + +A D + + + + TG VD+IR I Sbjct: 72 C--VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASH--TG-------VDDIRDI 120 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ Sbjct: 121 VESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVL 180 Query: 179 SRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC +S L K ++ ++ + + AA GSV + IL Sbjct: 181 SRCQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL 234 >gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamma and tau [Mycobacterium kansasii ATCC 12478] Length = 598 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGK-TSSARILARSLNCAQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C +A +A + G VD+ R +R Sbjct: 64 GP--TATPCGVCE------SCLALAPNAPGSIDVVELDAASHGG-------VDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 109 RAFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F L + + EQ ++ D+ V A GS + +L Sbjct: 169 THHYPFRLLPPRTMRGLIGRICEQEGVVIDDAVYPLVIRAGGGSPRDTLSVL 220 >gi|256419921|ref|YP_003120574.1| DNA polymerase III gamma/tau subunits-like protein [Chitinophaga pinensis DSM 2588] gi|256034829|gb|ACU58373.1| DNA polymerase III gamma/tau subunits-like protein [Chitinophaga pinensis DSM 2588] Length = 379 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 44/255 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G EDI++ L + + R+ HA + +G G LG +A +++ +K P C Sbjct: 6 VIGQEDIQQQLIRSTENNRLGHANIILAPEGAGGLPLGLAFAQYLVCE---NKQPDGACG 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPK-----------TGKWRTV------------- 109 C K A +H ++ SY + P+ +WR Sbjct: 63 --QCQACTK--AGRYIHPDIHFSYPVIPRKPGDKPISSDYAAEWREFIDTHPYGNAYDWL 118 Query: 110 -----------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 IT E + I LSL + ++++++ + + N N LLK +EEPP Sbjct: 119 QFIGAENKQGNITAMECQDIIRKLSLKSFESTYKILLMWMPEYLG-NEGNRLLKLIEEPP 177 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 +F+L++ IL+TI SR IK N L + + AL + + R IA+ Sbjct: 178 DNTIFLLVAENQEQILATILSRTHLIKVNPLPKEVVVDALIKRANIPAAKARQAATIAS- 236 Query: 219 GSVARAIKILHYDCD 233 G+ A+ +L + D Sbjct: 237 GNYREALYMLQHSDD 251 >gi|119714652|ref|YP_921617.1| DNA polymerase III, delta prime subunit [Nocardioides sp. JS614] gi|119535313|gb|ABL79930.1| DNA polymerase III, delta prime subunit [Nocardioides sp. JS614] Length = 385 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 18/187 (9%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKA 67 V++ + H E + + G M HA LF G G G++ +A + + P+ Sbjct: 3 VWDGLVGQHRPSEALRAAAHGQG-MSHAFLFTGPPGSGRSNAAVAFAAALQCERPED--- 58 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 R C H H L S++ + I VDE+R + +L Sbjct: 59 --RGCG-----------ECHECHTVLTGSHADVAVIRTEKLSIGVDEMRDLVRRSALAPV 105 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 W++++++ D + A NALLK++EEP + +++L + +L T+RSRC + Sbjct: 106 GRRWQIMIVEDADRLTERAWNALLKAIEEPADRTVWMLCAPTVEDVLPTVRSRCRLVTLT 165 Query: 188 SLSENNL 194 + + +++ Sbjct: 166 TPTTDDV 172 >gi|319403646|emb|CBI77231.1| DNA polymerase III subunit tau [Bartonella rochalimae ATCC BAA-1498] Length = 630 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 19/248 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E I L+ + +GR+ A + G +G+GK T A + Sbjct: 19 RKYRPQNFSDLIGQEAIVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNYKTK 78 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P + D Q+ D + + + TG +D+IR I + Sbjct: 79 DIDQPTTLF--DTLGEHCAQIIEGRHIDVIEMDAA--SHTG-------IDDIREIIEQIR 127 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +++ +ID V ++ A N LLK+LEEPP V FI + + TI SRC Sbjct: 128 YRPVSARYKIYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQR 187 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKI 235 + L L ++ K+ D + AA GSV A+ I + Y K+ Sbjct: 188 FNLQRIETTVLVTHLRKVAQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAYGNGKV 247 Query: 236 ISSYIDLI 243 ++ + L+ Sbjct: 248 DATAVSLM 255 >gi|86738987|ref|YP_479387.1| DNA polymerase III subunits gamma and tau [Frankia sp. CcI3] gi|86565849|gb|ABD09658.1| DNA polymerase III, subunits gamma and tau [Frankia sp. CcI3] Length = 812 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 19/178 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPD 63 + P ++ G E + L + +GR+HHA LF G +G GK + A + +Q P Sbjct: 9 YRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAASLNCVQGP- 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C D C ++ AS + + S+ L VD+ R +R Sbjct: 68 -TPEPCGVC--DECV-GIRTGASMDVTEIDAASHGL------------VDDARDLRERAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D + A NALLK +EEPP + F+ + ++ TIRSR Sbjct: 112 FAPASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRT 169 >gi|225874538|ref|YP_002755997.1| DNA polymerase III, delta prime subunit [Acidobacterium capsulatum ATCC 51196] gi|225792997|gb|ACO33087.1| DNA polymerase III, delta prime subunit [Acidobacterium capsulatum ATCC 51196] Length = 368 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 29/236 (12%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 G+E + L + +GR+ H+LL G +G GK TL A Q + + PV P Sbjct: 7 IGNESAVRHLREAVAAGRVPHSLLMAGPRGAGKYTLALMLA----QAINCLRQPVTDGLP 62 Query: 75 D------PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--------------- 113 D C + M A D + +T K T I V Sbjct: 63 DFCGECANCERIGQAMDLTARVDEAIAAREDLRETDKKETRILVQTHPSVLVIPPDPPQL 122 Query: 114 --EIRRIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ++ ++R + T R + I + AAN+LLK LEEPP L IL++ Sbjct: 123 LIKLGQVRTLIREVYRTPSEARRSVYIFTSASFMKEAANSLLKVLEEPPSHALIILLAEN 182 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 +L TIRSR I+ +++ + L + ++R V A G+V RA+ Sbjct: 183 PGELLPTIRSRTSLIRLGAIATEQIEPLLASRRGDLKPAERALVARLAEGAVGRAL 238 >gi|300870467|ref|YP_003785338.1| DNA polymerase III subunit gamma [Brachyspira pilosicoli 95/1000] gi|300688166|gb|ADK30837.1| DNA polymerase III, gamma subunit [Brachyspira pilosicoli 95/1000] Length = 460 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 TVI +D IR I G RV++I+ ++ M++ A N L++LEEP +FILI+ Sbjct: 216 TVIPLDTIRNIIEMTYRKPRLGRKRVVIIEGIELMDKRAPNIFLRTLEEPSDNNIFILIT 275 Query: 168 HASPTI----LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 + + + + SR + ++F+SLSEN L L + ++ + K + GS+++ Sbjct: 276 SDTNKLVQDGMKPLISRMMELRFSSLSENTLRSILMK-RLRLSEEKTALALQYSSGSMSK 334 Query: 224 AIKIL 228 AIK L Sbjct: 335 AIKYL 339 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 27/47 (57%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ G K ++ Y SGR+HHA LF GE+G+GK YA +L Sbjct: 3 KVLGQTTPLKIMAGIYKSGRLHHAYLFYGEEGVGKYESALNYAKVLL 49 >gi|262039626|ref|ZP_06012920.1| DNA polymerase III [Leptotrichia goodfellowii F0264] gi|261746383|gb|EEY33928.1| DNA polymerase III [Leptotrichia goodfellowii F0264] Length = 323 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 K I +DE+R I Y ++ + ++ ++ ++ + + ++NALLK LEEPP+ V F Sbjct: 75 NKENKNIKIDEVREIIYSAIESSYSSPKKIFILSGIESLRKESSNALLKILEEPPKDVYF 134 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENN 193 IL+S S I+ TI+SR IKF+ +ENN Sbjct: 135 ILLSR-SMNIIPTIKSRA--IKFHIEAENN 161 >gi|39933692|ref|NP_945968.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris CGA009] gi|39647538|emb|CAE26059.1| possible DNA polymerase III tau subunit [Rhodopseudomonas palustris CGA009] Length = 623 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 43/239 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTA-RILARALN 87 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWR 107 + PD S K P M H +H D L + + + TG Sbjct: 88 YELPDGSVKGPT------------IHMPVHGVHCKAIMESRHMDVLEMDAASH--TG--- 130 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 131 ----VDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 186 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARA 224 + T+ SRC + + L L + ++++ V++ A G VARA Sbjct: 187 TEIRKVPVTVLSRCQRFDLRRVEADVLMNHLSNI------AQKEGVEVEPEALGIVARA 239 >gi|289551717|ref|YP_003472621.1| DNA polymerase III delta prime subunit [Staphylococcus lugdunensis HKU09-01] gi|289181248|gb|ADC88493.1| DNA polymerase III delta prime subunit [Staphylococcus lugdunensis HKU09-01] Length = 308 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 87/187 (46%), Gaps = 25/187 (13%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP 76 ++ E+ L+ + S ++ HA LFEG+ + +A +L C N Sbjct: 2 DEFERLLNAF-GSNKLSHAYLFEGDDAESMKQVAMDFAKLIL------------CQNNQQ 48 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C ++A DF+Y++ + I +++ ++ + ++ G ++V +I Sbjct: 49 CEL---KVAGFNHPDFMYVASD--------ESSIKKEQVEQLVHRMNQLPIEGAYKVYII 97 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 + + + N++LK LEEPP+ + ILIS IL TI SRC + F +++ + + Sbjct: 98 ESFEKLTVQGENSILKFLEEPPKNTIAILISTKPEQILDTIHSRCQHVYFKPMNKAHFVE 157 Query: 197 ALEQLKI 203 L ++ + Sbjct: 158 QLTEVSV 164 >gi|302872970|ref|YP_003841603.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulovorans 743B] gi|307686515|ref|ZP_07628961.1| DNA polymerase III subunits gamma and tau [Clostridium cellulovorans 743B] gi|302575827|gb|ADL49839.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulovorans 743B] Length = 539 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 29/234 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L + R+ HA L G +G GK + +L Sbjct: 8 REWRPRNFGEVVGQSQVTVTLKNQVKNNRIAHAYLLCGTRGTGKTS-----TAKIL---- 58 Query: 64 FSKAPVRMCNP---DPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 SKA V NP +PC+ K++ D + + + VD+IR I Sbjct: 59 -SKA-VNCLNPIDGEPCNECEMCKKINEGIAIDVTEMDAASHN---------GVDDIRNI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V + A NA LK+LEEPP++VLFIL + + TI Sbjct: 108 IEDVQYPPQEAKFKVYIIDEVHMLTMGAVNAFLKTLEEPPKRVLFILATTDPQKLPITIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC F + ++ L + I D F+ G++ A+ IL Sbjct: 168 SRCQRYDFKRIRNVDIQARLRSIVDNKNIEADDLALSFIARICDGALRDAVSIL 221 >gi|192289049|ref|YP_001989654.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris TIE-1] gi|192282798|gb|ACE99178.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris TIE-1] Length = 623 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 43/239 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTA-RILARALN 87 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWR 107 + PD S K P M H +H D L + + + TG Sbjct: 88 YELPDGSVKGPT------------IHMPVHGVHCKAIMESRHMDVLEMDAASH--TG--- 130 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 131 ----VDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 186 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARA 224 + T+ SRC + + L L + ++++ V++ A G VARA Sbjct: 187 TEIRKVPVTVLSRCQRFDLRRVEADVLMNHLSNI------AQKEGVEVEPEALGIVARA 239 >gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum CIP 105476] gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP 105476] Length = 646 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 19/233 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + GR+ A + G +G+GK T R L Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTA-RILARALN 70 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + D + + D Q+ D + + + + TG +D+IR I Sbjct: 71 YKTKDIDQPTTVL---DTLGEHCTQIIEGRHIDVIEMDAASH--TG-------IDDIREI 118 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI Sbjct: 119 IEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITIL 178 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC + L L Q+ K+ D + AA GS A+ I Sbjct: 179 SRCQRFDLRRIEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSI 231 >gi|168028953|ref|XP_001766991.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681733|gb|EDQ68157.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1473 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 19/201 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH-VLQ 60 + + + P + + G + K L+ G++ LF G +G GK T +A V Sbjct: 691 MSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAAALVCL 750 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + + P +C ++ A+ L+ + K V T ++ +R Sbjct: 751 NTEPHRRPCGLC---------RECATMTLN---------RSRDVKEIDVSTCPDLDHMRL 792 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L+L ++ G +V +++ D +N A LK L++PP+ V+FILI+ + + SR Sbjct: 793 LLNLPSSNGRQQVFILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSR 852 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C F L E+ + L+ L Sbjct: 853 CQKYHFGKLKESEIMTRLQGL 873 >gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] Length = 668 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 36/293 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 18 VLARKYRPHSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTA-RILARALN 76 Query: 60 -QNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + + + + M P C ++ H D + + + + TG +D+IR Sbjct: 77 YETGEIDQPTIHMAEPGIHCQAIME--GRHV--DVVEMDAASH--TG-------IDDIRE 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + ++V +ID V ++ A N LLK+LEEPP+ V F+ + + T+ Sbjct: 124 IIAQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPITV 183 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + L L+Q+ K+ D + AA GSV ++ + D Sbjct: 184 LSRCQRFDLRRVESATLIGHLKQIAEKEKVEIEDDALRLIARAAEGSVRDSLSL----TD 239 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 + I+ + A++ M +AD + D L E+I+K SA Sbjct: 240 QAIAHGAGAVTA----GAVRDMLGLADRVRVID-------LFEYIMKGDAASA 281 >gi|269958349|ref|YP_003328136.1| DNA polymerase III, subunits gamma and tau [Anaplasma centrale str. Israel] gi|269848178|gb|ACZ48822.1| DNA polymerase III, subunits gamma and tau [Anaplasma centrale str. Israel] Length = 513 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 19/190 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + + L + G + +L G G+GK T R L + P Sbjct: 55 LVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCA-RIVSLCL---NCVNGP----T 106 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYW 131 PDPC H+ + + NP + VD+IR + S + + Sbjct: 107 PDPCG---------LCHECVSIQNFTNPDVIEIDAASNTGVDDIRVLLENSSYLPASSRY 157 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++ +A NALLK+LE+P + V F++ + + T+ SRC + + L+ Sbjct: 158 KVYIIDEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLSKLTS 217 Query: 192 NNLYKALEQL 201 + L+ L ++ Sbjct: 218 DQLFTHLVEV 227 >gi|315660349|ref|ZP_07913202.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus lugdunensis M23590] gi|315494638|gb|EFU82980.1| DNA-directed DNA polymerase III subunit delta' [Staphylococcus lugdunensis M23590] Length = 308 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 87/187 (46%), Gaps = 25/187 (13%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP 76 ++ E+ L+ + S ++ HA LFEG+ + +A +L C N Sbjct: 2 DEFERLLNAF-GSNKLSHAYLFEGDDAESMKQVAMDFAKLIL------------CQNNQQ 48 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 C ++A DF+Y++ + I +++ ++ + ++ G ++V +I Sbjct: 49 CEL---KVAGFNHPDFMYVASD--------ESSIKKEQVEQLVHRMNQLPIEGAYKVYII 97 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 + + + N++LK LEEPP+ + ILIS IL TI SRC + F +++ + + Sbjct: 98 ESFEKLTVQGENSILKFLEEPPKNTIAILISTKPEQILDTIHSRCQHVYFKPMNKAHFVE 157 Query: 197 ALEQLKI 203 L ++ + Sbjct: 158 QLTEVSV 164 >gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM 43247] gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis DSM 43247] Length = 774 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 21/202 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G E + LS +GR++HA LF G +G GK + A + +Q Sbjct: 5 RTYRPATFADVVGQEHVTDPLSHALDAGRINHAYLFSGPRGCGKTSSARILARSLNCVQG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + PC V +A + + G VD+ R +R Sbjct: 65 PTST----------PCGECVSCVALAPGGPGNLDVIELDAASHGG-------VDDTRELR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +RV ++D + NALLK +EEPP+ ++F+ + +L TIRS Sbjct: 108 DRAFYAPAESRYRVFIVDEAHMVTNAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRS 167 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 R F L+ + LE++ Sbjct: 168 RTHHYPFRLLAPPVMRGLLERI 189 >gi|225631197|ref|ZP_03787895.1| DNA polymerase III, delta' subunit, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591105|gb|EEH12289.1| DNA polymerase III, delta' subunit, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 273 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 32/153 (20%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G++GIGKATL ++ +L + ++ ++ Sbjct: 24 LICGKKGIGKATLAKSFSNWLL-----------------------------IKNYNEVAL 54 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 L+ G I ++++R ++ FL L+ ++ +ID ++ M NA NA+LK LEEP Sbjct: 55 DLHIVEG---DTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEP 111 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 P+ +ISH I +TI RC + L+ Sbjct: 112 PKNSKIFIISHKPYDIQTTILCRCFQLNLLPLT 144 >gi|108761627|ref|YP_630176.1| DNA polymerase III subunits gamma and tau, truncated [Myxococcus xanthus DK 1622] gi|108465507|gb|ABF90692.1| DNA polymerase III, gamma and tau subunits, truncated [Myxococcus xanthus DK 1622] Length = 402 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 37/287 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + ++ R+ HA LF G +G+GK T A + Sbjct: 5 VLARKWRPQKFDDMTGQEHVVRTVANAIKIDRVAHAYLFCGPRGVGKTTAARLLAKAL-- 62 Query: 61 NPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + K P PC ++A+ D + + N V+ +R I Sbjct: 63 --NCEKGPT----AQPCGECRACTEIAAGTSVDVAEIDGASNN---------GVENVREI 107 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R ++ +ID V ++ A NALLK+LEEPP V FI + + + TI Sbjct: 108 RENAKYLPQRDRHKIYIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTIL 167 Query: 179 SRCLSIKFNSLSENNLYKALEQL-KIMGW---DSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L+++ K G D V + G + A+ +L D+ Sbjct: 168 SRCQRHNFRRIPAARMLQRLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLL----DQ 223 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE 281 +++S A +++AD L + D+ + DF + K+ Sbjct: 224 VLASC----------GATPSDEEVADALGAIDRTLVQDFADALVHKD 260 >gi|310288197|ref|YP_003939456.1| DNA polymerase III, delta' subunit [Bifidobacterium bifidum S17] gi|309252134|gb|ADO53882.1| DNA polymerase III, delta' subunit [Bifidobacterium bifidum S17] Length = 394 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 16/149 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD R + +P + +Q+ S D Sbjct: 28 LAQSWLICGPPGSGRSNVARAFAA-ALESPD------RGLSDEPTN-ITRQVLSGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I +D++R++ +T WR+I+I+ VD M N LLK Sbjct: 80 TTLATN--------KVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDRMLERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRC 181 +EEP +++L + ++ +L TIRSR Sbjct: 132 EIEEPSPHTIWLLCAPSAQDVLPTIRSRT 160 >gi|328949738|ref|YP_004367073.1| DNA polymerase III, delta prime subunit [Marinithermus hydrothermalis DSM 14884] gi|328450062|gb|AEB10963.1| DNA polymerase III, delta prime subunit [Marinithermus hydrothermalis DSM 14884] Length = 310 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 35/201 (17%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 ++ L GHE++ L + + LF G +G+G+ + +A + F Sbjct: 6 WDGELLGHEEVRARLPTFRA-----QSFLFTGPEGVGRRQVARWFAYGLNCQEGFP---- 56 Query: 70 RMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGK--WRTVITVDEI--RRIRYFLSL 124 PC ++ H D+L + KTG+ R VI +++I R SL Sbjct: 57 ------PCGRCASCRLEPHP--DYLEIRPETETKTGRKARRAVIRLEQIVPRAEEDRESL 108 Query: 125 TANTGYW---------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 W ++ +ID + +AANALLK LEEPP ILI+ + +L Sbjct: 109 VG----WLETRPRFRAKIAVIDGAHHLGESAANALLKLLEEPPGYARLILIAPSRELVLP 164 Query: 176 TIRSRCLSIKFNSLSENNLYK 196 T+ SR L ++F + E L + Sbjct: 165 TLASRTLEVRFGPVDEATLSR 185 >gi|309775016|ref|ZP_07670031.1| DNA polymerase III subunit delta' [Erysipelotrichaceae bacterium 3_1_53] gi|308917234|gb|EFP62959.1| DNA polymerase III subunit delta' [Erysipelotrichaceae bacterium 3_1_53] Length = 319 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 22/177 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGH-VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA +F G G K + A V P F+ C +++ + Sbjct: 25 RLAHAYMFSGPSGTPKKETAYLLAQSLVCGQPGFACETCDTC---------ERIIHNEYA 75 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDPVDGMNRNAAN 148 D +YL + I D+I ++++ + T TG ++ ++D + +A N Sbjct: 76 DMIYLDGT--------SVSIKKDDILKLQHAFAKTGLEKTGK-KIYVLDHAENATPDALN 126 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIM 204 +LLK LEEP ++ ILI +L TI SRC +I F +LS Y+A+ E+L+ M Sbjct: 127 SLLKFLEEPGSDMIAILIVEQLDRVLPTIISRCQNIPFTALSAAQCYEAVQEELEAM 183 >gi|114047237|ref|YP_737787.1| DNA polymerase III subunit delta' [Shewanella sp. MR-7] gi|113888679|gb|ABI42730.1| DNA polymerase III, delta prime subunit [Shewanella sp. MR-7] Length = 318 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + LS TA RV +I + +N +ANALLK+LEEP + L +L S Sbjct: 94 IKVDQIRELCTRLSATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDT 153 Query: 170 SPTILSTIRSRCLSIKFNSLSE 191 +++TI SRC + F + S+ Sbjct: 154 PARLMATISSRCQRLPFVAPSK 175 >gi|183985104|ref|YP_001853395.1| hypothetical protein MMAR_5136 [Mycobacterium marinum M] gi|183178430|gb|ACC43540.1| conserved protein [Mycobacterium marinum M] Length = 405 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 23/161 (14%) Query: 31 GRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G M HA L G G G+ A L F A + D R C +HA Sbjct: 41 GDMTHAWLITGPPGSGRSIAALCFAAALQCTSDGDPGCGRCRSC-------LTTMAGTHA 93 Query: 89 -LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + + S I VD++R I S TG ++++I+ D + AA Sbjct: 94 DVRRVIPEGLS-----------IGVDDMRAIVQIASRRPTTGRHQIVLIEDADRLTEGAA 142 Query: 148 NALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKF 186 NALLK +EEPP +F+L + + I T+RSRC + Sbjct: 143 NALLKVVEEPPASTVFLLCAPSVDPEDIAVTLRSRCRHVAL 183 >gi|52078526|ref|YP_077317.1| DNA polymerase III subunit delta' [Bacillus licheniformis ATCC 14580] gi|52783888|ref|YP_089717.1| DNA polymerase III subunit delta' [Bacillus licheniformis ATCC 14580] gi|319648555|ref|ZP_08002769.1| HolB protein [Bacillus sp. BT1B_CT2] gi|52001737|gb|AAU21679.1| DNA polymerase III (delta' subunit) [Bacillus licheniformis ATCC 14580] gi|52346390|gb|AAU39024.1| HolB [Bacillus licheniformis ATCC 14580] gi|317389322|gb|EFV70135.1| HolB protein [Bacillus sp. BT1B_CT2] Length = 329 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 15/179 (8%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L R+ HA LFEG +G GK A D ++ P C Sbjct: 15 VMKLLQNSIERNRLAHAYLFEGRKGTGKLDAATLLAKSFFCLEDGAE-PCESCRNCQRIE 73 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 H +H L+ K G +I+ ++ S T + ++ +I Sbjct: 74 SGNHPDVHVVH-----PDGLSIKKG---------QIQALQEEFSKTGLESHKKLYIISHA 119 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M NAAN+LLK LEEP + +L++ +L TI SRC + F SL ++ K L Sbjct: 120 DQMTVNAANSLLKFLEEPSSDTIAVLLTEQPQKLLDTIISRCQVLSFQSLQPESIEKEL 178 >gi|324997955|ref|ZP_08119067.1| DNA polymerase III, delta' subunit [Pseudonocardia sp. P1] Length = 383 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 28/172 (16%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA LF G G G++ N + A C D C A Sbjct: 27 MTHAWLFTGPPGSGRS------------NAARAFAAALQCPYDGCGECA------ACRTT 68 Query: 93 LYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 L ++S +NP+ I VDE+R + + TG W++++I D + A+N Sbjct: 69 LAGTHSDVREINPEG----LSIKVDEMRALVQLAARRPATGTWQIVIIADADRLTEGASN 124 Query: 149 ALLKSLEEP-PQKVLFILISHASPT-ILSTIRSRCLSIKFNSLSENNLYKAL 198 ALLK++EEP P+ V + P + TIRSRC ++ S S + L Sbjct: 125 ALLKAVEEPAPETVWLLCAPSDHPEDVPVTIRSRCRPVQLRSPSAEAVAGVL 176 >gi|124005987|ref|ZP_01690824.1| putative DNA polymerase III, delta subunit [Microscilla marina ATCC 23134] gi|123988394|gb|EAY28040.1| putative DNA polymerase III, delta subunit [Microscilla marina ATCC 23134] Length = 376 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+VDE R I LSL ++++++ + MN +AANA+LK LEEP K LF+L+S Sbjct: 131 ISVDESRHIIQQLSLKPFESEYKILLLWLPEFMNISAANAILKILEEPSPKTLFLLVSQN 190 Query: 170 SPTILSTIRSRCLSIKFNSLSEN---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 +L+TI SR +++ +++ N A +QL K V A GS+ AI Sbjct: 191 PNQLLATIISRVQAVQTAPITDEEVANYLVAHQQLP----PEKAQQVAYMADGSINAAIH 246 Query: 227 IL 228 +L Sbjct: 247 LL 248 >gi|297201355|ref|ZP_06918752.1| DNA polymerase III subunit delta [Streptomyces sviceus ATCC 29083] gi|197712780|gb|EDY56814.1| DNA polymerase III subunit delta [Streptomyces sviceus ATCC 29083] Length = 401 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 +M HA LF G G G+ +A LQ +P R P F H Sbjct: 42 KMTHAWLFTGPPGAGRNQAARAFA-AALQ----CVSPDRALGGAPGCGFC-----DGCHT 91 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L +++ + I D++R +R + AN G W++I+++ + +N +ANA+ Sbjct: 92 ALIGTHADVSSVAAVGSQILADDMRDTVRKSFTSPAN-GRWQIILVEDAERLNEKSANAV 150 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 LK++EEP + +++L + + +L TIRSRC + ++ S Sbjct: 151 LKAVEEPAPRTVWMLCAPSIEDVLPTIRSRCRHLNLSTPS 190 >gi|150019759|ref|YP_001312013.1| DNA polymerase III subunits gamma and tau [Clostridium beijerinckii NCIMB 8052] gi|149906224|gb|ABR37057.1| DNA polymerase III, subunits gamma and tau [Clostridium beijerinckii NCIMB 8052] Length = 548 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 29/252 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I L + R+ HA LF G +G GK + + L D Sbjct: 8 REWRPKNFEDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTA-KVMAKALNCLD 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 N +PC+ +++ D L + N G + +D+ + Sbjct: 67 LQ-------NGEPCNECEMCRKINEGLAIDVTELDAASN--NGIDKIRDIIDDTK----- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D V ++ A NA LK+LEEPP++V+FIL + + TI SRC Sbjct: 113 --YPPQEARYKIYIMDEVHMLSVGAVNAFLKTLEEPPKRVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKILHYDC----D 233 F +S+ + L+++ + + ++ K D + G++ A+ IL D Sbjct: 171 QRFDFKRISQKEISSRLKKITDSQGITYEQKSLDLISRVCDGAMRDALSILDQAIAMGED 230 Query: 234 KIISSYIDLIHI 245 KI +Y DL+ I Sbjct: 231 KI--NYEDLVSI 240 >gi|183602881|ref|ZP_02964241.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis HN019] gi|219682708|ref|YP_002469091.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis AD011] gi|241190284|ref|YP_002967678.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195690|ref|YP_002969245.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183217882|gb|EDT88533.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis HN019] gi|219620358|gb|ACL28515.1| possible DNA polymerase III delta prime subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248676|gb|ACS45616.1| DNA polymerase III subunit delta' [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250244|gb|ACS47183.1| DNA polymerase III subunit delta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178001|gb|ADC85247.1| DNA polymerase III, delta' subunit [Bifidobacterium animalis subsp. lactis BB-12] gi|295793271|gb|ADG32806.1| DNA polymerase III subunit delta [Bifidobacterium animalis subsp. lactis V9] Length = 430 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 18/207 (8%) Query: 20 IEKFLSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 +E+ GR + + L G G G + +A L++PD + + + Sbjct: 14 VEELRRVAEGDGRGVAQSWLICGPAGSGTMQVARAFAA-ALESPDHGEGEL-------PT 65 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 Q+ + D + LS + I +DE+R + +T WR+I+I+ Sbjct: 66 KITSQILADRFPDVVTLSTD--------KVTIGIDEVRDLVTLSEQMPSTAPWRIIIIEN 117 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + M N LLK +EEP +++L + ++ +L TIRSR + + + L Sbjct: 118 TERMLERTTNVLLKEIEEPSAHTIWLLCAPSAQDVLPTIRSRTRLVTLGVPVADEIATWL 177 Query: 199 E-QLKIMGWDSKRDFVKIAAYGSVARA 224 E +++++ +KR+ + A G A A Sbjct: 178 EREVRVLEDPTKRERARAKAVGGRAGA 204 >gi|24374154|ref|NP_718197.1| DNA polymerase III, delta prime subunit [Shewanella oneidensis MR-1] gi|24348658|gb|AAN55641.1|AE015703_3 DNA polymerase III, delta prime subunit [Shewanella oneidensis MR-1] Length = 318 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 48/83 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + LS TA RV +I + +N +ANALLK+LEEP + L +L S Sbjct: 94 IKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDT 153 Query: 170 SPTILSTIRSRCLSIKFNSLSEN 192 +++TI SRC + F + S+ Sbjct: 154 PARLMATISSRCQRLPFVAPSKT 176 >gi|90426319|ref|YP_534689.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris BisB18] gi|90108333|gb|ABD90370.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris BisB18] Length = 618 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 17/226 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + L G + + + LS + +GR+ A + G +G+GK T R L Sbjct: 27 VLARKYRPNNFEDLIGQDAMVRTLSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 85 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + PD S + P P M S + D L + + + TG ++++R+I Sbjct: 86 YEMPDGSVTAPTIHMPVPGVHCQAIMESRHI-DVLEMDAASH--TG-------IEDVRQI 135 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ Sbjct: 136 TDGVRYSPTSARYKVYIIDEVHMLSDKAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVL 195 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 SRC + + L L I G ++ V+ A G +ARA Sbjct: 196 SRCQRFDLRRVEADVLMAHL--ANIAGKENVE--VEPEALGIIARA 237 >gi|227510681|ref|ZP_03940730.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189802|gb|EEI69869.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 336 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 14/173 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HA LF GE G G+ + A + P C C+ ++ +H D Sbjct: 28 ELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKC--AECT----RIMNHDHPD 81 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + T I VD+IR ++ + +A G + +I D M AAN+LL Sbjct: 82 VVI--------TKPDGLSIKVDQIRHVKSEFTKSAMEGSKKAFIISDADKMTTGAANSLL 133 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 K +EEP V+ LIS IL TI SR ++F S+ ++ + + L + I+ Sbjct: 134 KFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKSGIL 186 >gi|118619390|ref|YP_907722.1| DNA polymerase III subunit delta' [Mycobacterium ulcerans Agy99] gi|118571500|gb|ABL06251.1| conserved protein [Mycobacterium ulcerans Agy99] Length = 401 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 23/161 (14%) Query: 31 GRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G M HA L G G G+ A L F A + D R C +HA Sbjct: 37 GDMTHAWLITGPPGSGRSIAALCFAAALQCTSDGDPGCGRCRSC-------LTTMAGTHA 89 Query: 89 -LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + + S I VD++R I S TG ++++I+ D + AA Sbjct: 90 DVRRVIPEGLS-----------IGVDDMRAIVQIASRRPTTGRHQIVLIEDADRLTEGAA 138 Query: 148 NALLKSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKF 186 NALLK +EEPP +F+L + + I T+RSRC + Sbjct: 139 NALLKVVEEPPASTVFLLCAPSVDPEDIAVTLRSRCRHVAL 179 >gi|288918923|ref|ZP_06413266.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EUN1f] gi|288349675|gb|EFC83909.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EUN1f] Length = 949 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G E + L SGR+HHA LF G +G GK + A + + Sbjct: 9 YRPATFGQVVGQEHVTDALGHALRSGRLHHAYLFSGPRGCGKTSSARILAASLNCEKGPT 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P +C D C ++ +S + + S+ L VD+ R +R Sbjct: 69 PEPCGVC--DQCV-SIRTGSSMDVTEIDAASHGL------------VDDARDLRERAFFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 114 PASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIATIRSRTHHYA 173 Query: 186 FNSLSENNLYKALEQL 201 F + L LE + Sbjct: 174 FRLVPPGVLRGHLESI 189 >gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] Length = 663 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVR 70 L G E I L+ ++ A LF G +G GK + A + LQ+ + P Sbjct: 17 ELVGQEAIATTLTNAISLVKVAPAYLFTGPRGTGKTSSARILAKSLNCLQSGHPTPTPCG 76 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C D C K ++L D + + + N TG VD IR + Sbjct: 77 VC--DICQGITK---GYSL-DVIEIDAASN--TG-------VDNIRELIEKAQFAPVQCR 121 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 122 YKVYVIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181 Query: 191 ENNLYKALEQL 201 + K L ++ Sbjct: 182 LEAMVKHLSKI 192 >gi|117920214|ref|YP_869406.1| DNA polymerase III subunit delta' [Shewanella sp. ANA-3] gi|117612546|gb|ABK48000.1| DNA polymerase III, delta prime subunit [Shewanella sp. ANA-3] Length = 318 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + LS TA RV +I + +N +ANALLK+LEEP + L +L S Sbjct: 94 IKVDQIRELCTRLSATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDT 153 Query: 170 SPTILSTIRSRCLSIKFNSLSE 191 +++TI SRC + F + S+ Sbjct: 154 PARLMATISSRCQRLPFVAPSK 175 >gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] Length = 594 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNP 62 R + P + G + + + L + + R+ HA + G +G GK T A G Sbjct: 17 RKYRPETFSDMVGQDAMVRTLKNAFEADRIAHAFVMTGIRGTGKTTTARIIAKGMNCVGV 76 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P +PC H L + RT V +IR I + Sbjct: 77 DGTGGPTT----EPCG-----QCEHCLSIIQGRHVDVMEMDAASRT--GVGDIREIIDSV 125 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +A + +++ +ID V ++ +A NALLK+LEEPP V FI + I T+ SRC Sbjct: 126 HYSAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKIPVTVLSRCQ 185 Query: 183 SIKFNSLSENNLYKALEQL 201 + +++ + L+++ Sbjct: 186 RFDLRRIEPDDMMELLKKI 204 >gi|224283542|ref|ZP_03646864.1| DNA polymerase III subunit delta' [Bifidobacterium bifidum NCIMB 41171] gi|313140696|ref|ZP_07802889.1| DNA polymerase III subunit delta [Bifidobacterium bifidum NCIMB 41171] gi|313133206|gb|EFR50823.1| DNA polymerase III subunit delta [Bifidobacterium bifidum NCIMB 41171] Length = 394 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 16/149 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD R + +P + +Q+ S D Sbjct: 28 LAQSWLICGPPGSGRSNVARAFAA-ALESPD------RGLSDEPTN-ITRQVLSGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I +D++R++ +T WR+I+I+ VD M N LLK Sbjct: 80 TTLATN--------KVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDRMLERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRC 181 +EEP +++L + ++ +L TIRSR Sbjct: 132 EIEEPSPHTIWLLCAPSAQDVLPTIRSRT 160 >gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] Length = 639 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 44 VLARKYRPKDFTDLIGQEPMVRTLTNAFSTGRIAQAWMLTGVRGVGKTTTA-RILARALN 102 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + + + + + P P + + H D + + + + TG +D+IR I Sbjct: 103 YKTAEIDQPSIDLTTPGEHCPAIME-GRHV--DVIEMDAASH--TG-------IDDIREI 150 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ Sbjct: 151 IEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITVL 210 Query: 179 SRCLSIKFNSLSENNL---YKALEQLKIMGWDSKR-DFVKIAAYGSVARAIKIL 228 SRC + L + ++ + +G D + + AA GSV + +L Sbjct: 211 SRCQRFDLRRIETGALASHFSSVAAQEGIGIDDESLSMIARAAEGSVRDGLSLL 264 >gi|261403893|ref|YP_003240134.1| DNA polymerase III, delta prime subunit [Paenibacillus sp. Y412MC10] gi|261280356|gb|ACX62327.1| DNA polymerase III, delta prime subunit [Paenibacillus sp. Y412MC10] Length = 328 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 21/188 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRM 71 + G E ++ L + HA LF G G G+ L F A + D Sbjct: 6 IVGQETAKQLLQNALRRNAVSHAYLFSGPNGAGQMQTALTFAKALFCTERED-------- 57 Query: 72 CNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 D C ++ + H H L + + P I +D+IR ++ S + Sbjct: 58 ---DACGQCLECRKVEHGNHPDLTM---VEPDGAS----IKIDQIRDLQRIFSYRSENRN 107 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +ID + M AAN+LLK LEEP + ILI+ +L T++SR + F +L Sbjct: 108 PKVYIIDRAEKMTTQAANSLLKFLEEPQAPAVAILIAENGQALLPTVQSRSQLVPFRALD 167 Query: 191 ENNLYKAL 198 + K L Sbjct: 168 PQMMEKVL 175 >gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus chthonoplastes PCC 7420] gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus chthonoplastes PCC 7420] Length = 700 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 78/188 (41%), Gaps = 17/188 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G E I + L+ ++ A LF G +G GK T R L K Sbjct: 18 LVGQEAIAQTLTNAIRQEKVAPAYLFCGPRGTGK-TSSARILAKSLNCLTTDKP-----T 71 Query: 74 PDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P PC + +A D + + N TG VD IR I + Sbjct: 72 PQPCGTCDVCRTIAQGTALDITEIDAASN--TG-------VDNIREIIERAQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D ++ A NALLK+LEEPP+ V+F+L + +L TI SRC F + Sbjct: 123 KVYVVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182 Query: 192 NNLYKALE 199 + K L+ Sbjct: 183 AAMVKHLQ 190 >gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. viciae 3841] gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae 3841] Length = 625 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 39/263 (14%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 + + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 30 FTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPT 89 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +AP C Q H D + + + + TG +D+IR I Sbjct: 90 IDLRAPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDIREIIEQ 130 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 131 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 190 Query: 182 LSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 +S ++L + G +++ D + + AA GS + +L D+ I+ Sbjct: 191 QRFDLRRISASDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSLL----DQAIA 246 Query: 238 SYIDLIHIPRQEYALQKMQQIAD 260 ++ Q A++ M +AD Sbjct: 247 HGAGVV----QAEAVRGMLGLAD 265 >gi|237750661|ref|ZP_04581141.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879] gi|229373751|gb|EEO24142.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879] Length = 939 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 23/222 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + + L S ++ +A LF G +G GK T R LQ R Sbjct: 56 ELVGQESVARTLCLALDSKKIANAYLFSGLRGSGK-TSSARILARSLQ-------CERGI 107 Query: 73 NPDPCSPFVKQMAS-HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 PC +A+ H D L + N K R D I + +Y ++ G Sbjct: 108 TSSPCGTCANCIAALKGAHLDITELDGASNRKIDDMR-----DLIEQTKYKPTM----GR 158 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID V + + A N+LLK+LEEPP V FIL + + +TI SR +F + Sbjct: 159 FKIFIIDEVHMLTKEAFNSLLKTLEEPPNYVKFILATTDPLKVPATILSRTQHFRFKKIP 218 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +N+L L++ + ++ D + +GS+ + +L Sbjct: 219 TTALKNHLAHILQKENVSSDEASLDMLIRNGHGSLRDTLTLL 260 >gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens BL2] Length = 1148 Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L GR++HA LF G +G GK T R L + Sbjct: 7 RRYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSA-RILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P P PC P + +A+ + G VD+ R +R Sbjct: 63 CAKGPT----PVPCGECPSCEDLANGGPGSLDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V ++D + NALLK +EEPP + FI + ++ TIRSR Sbjct: 112 AIYAPARDRYKVFILDEAHMVTSQGFNALLKIVEEPPPHIKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L +E L Sbjct: 172 HHYPFRLVPPEALGNYMEDL 191 >gi|52841630|ref|YP_095429.1| DNA polymerase III, delta prime subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628741|gb|AAU27482.1| DNA polymerase III, delta prime subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 301 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I +D+IR ++ LT ++I+I+ + MN A+NALLK LEEP Q +FIL++ Sbjct: 83 IIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQ 142 Query: 169 ASPTILSTIRSRCLSIKFNSLSE---NNL 194 I T+ SRC +F E NNL Sbjct: 143 QIGNIPPTVLSRCQITQFAVFDELPCNNL 171 >gi|317120929|ref|YP_004100932.1| hypothetical protein Tmar_0080 [Thermaerobacter marianensis DSM 12885] gi|315590909|gb|ADU50205.1| hypothetical protein Tmar_0080 [Thermaerobacter marianensis DSM 12885] Length = 332 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 42/75 (56%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +D +RR L L G +V++ D + AANALLKS+EEPP V+F+ + Sbjct: 74 IDAVRRTLALLPLRPQAGPRKVVVWRDADRLTPQAANALLKSVEEPPPFVVFLFTTDHLT 133 Query: 172 TILSTIRSRCLSIKF 186 +L T+RSRC + F Sbjct: 134 AVLPTLRSRCRVVPF 148 >gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] Length = 578 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFVDLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC +A H D + + + N G R +I R Sbjct: 69 IGPDGNGGPTT----EPCGECEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYR- 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 124 --------AASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 175 Query: 178 RSRC 181 SRC Sbjct: 176 LSRC 179 >gi|113970002|ref|YP_733795.1| DNA polymerase III subunit delta' [Shewanella sp. MR-4] gi|113884686|gb|ABI38738.1| DNA polymerase III, delta prime subunit [Shewanella sp. MR-4] Length = 318 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + LS TA RV +I + +N +ANALLK+LEEP + L +L S Sbjct: 94 IKVDQIRELCTRLSATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDT 153 Query: 170 SPTILSTIRSRCLSIKFNSLSE 191 +++TI SRC + F + S+ Sbjct: 154 PARLMATISSRCQRLPFVAPSK 175 >gi|154684550|ref|YP_001419711.1| DNA polymerase III subunit delta' [Bacillus amyloliquefaciens FZB42] gi|154350401|gb|ABS72480.1| HolB [Bacillus amyloliquefaciens FZB42] Length = 329 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H IEK R+ HA LFEG++G GK A D +P Sbjct: 20 HNSIEK--------KRLSHAYLFEGKKGTGKLDAALLLAKSFFCLED---------GTEP 62 Query: 77 CSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 C K++ S D + + P I +I+ ++ S T + ++ Sbjct: 63 CGECRNCKRIESGNHPDL----HVVQPDG----LSIKKAQIQSLQEEFSKTGLESHKKLY 114 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +I D M NAAN+LLK LEEP Q + ILI+ IL TI SRC + F L Sbjct: 115 IISHADQMTTNAANSLLKFLEEPSQDTIAILITEQLHRILDTIVSRCQVLPFQPL 169 >gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] gi|326197615|gb|EGD54803.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] Length = 790 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 82/206 (39%), Gaps = 29/206 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + LS+ +GR++HA LF G +G GK T R L Sbjct: 5 RTYRPATFAEVVGQEHVTAPLSRALDTGRINHAYLFSGPRGCGK-TSSARILARSLN--- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 C P S +S SL P V+ VD+ Sbjct: 61 --------CEQGPTSTPCGTCSS---------CVSLGPGGPGNLDVVELDAASHGGVDDT 103 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +RV +ID ++ NALLK +EEPP+ ++FI + +L+ Sbjct: 104 RDLRDRAFYAPAESRYRVFIIDEAHMVSSAGFNALLKIVEEPPEHLIFIFATTEPEKVLT 163 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 TI+SR F L+ + LE + Sbjct: 164 TIKSRTHHYPFRLLAPPVMRGLLEGI 189 >gi|296393301|ref|YP_003658185.1| DNA polymerase III subunits gamma and tau [Segniliparus rotundus DSM 44985] gi|296180448|gb|ADG97354.1| DNA polymerase III, subunits gamma and tau [Segniliparus rotundus DSM 44985] Length = 664 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 13/195 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G E + K LS +GR+ HA LF G +G GK +L A V Sbjct: 5 RRYRPERLDQVLGQEHVTKPLSVALEAGRLGHAYLFSGPRGCGKTSLARILARSVNCEKG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C + +A + G VD+ R +R Sbjct: 65 PTANPCGVCE------SCRALAEGGPGSIDVIELDAASHGG-------VDDTRDLRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 RV +ID + NALLK +EEPP ++F+ + +L TIRSR Sbjct: 112 YAPARSAKRVFIIDEAHMVTTAGFNALLKIVEEPPPHLIFVFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNLYKAL 198 F L L + L Sbjct: 172 YPFRLLPPKTLRELL 186 >gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative [Octadecabacter antarcticus 307] gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative [Octadecabacter antarcticus 307] Length = 590 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 12/179 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNP 62 R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 14 RKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGI 73 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D P +PC A + +TG V +IR I + Sbjct: 74 DGQGGP----TTEPCGTCENCAAIMEGRHVDVMEMDAASRTG-------VGDIREIIESV 122 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A + ++V +ID V ++ NA NALLK+LEEPP+ V FI + + T+ SRC Sbjct: 123 HYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRC 181 >gi|302544281|ref|ZP_07296623.1| DNA polymerase III, delta' subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461899|gb|EFL24992.1| DNA polymerase III, delta' subunit [Streptomyces himastatinicus ATCC 53653] Length = 406 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 16/160 (10%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFV 81 ++ S +M HA LF G G G+AT +A LQ +PD + C D C + Sbjct: 38 AEPMASSKMTHAWLFTGPPGSGRATAARAFA-AALQCVSPDRALGGAPGCGFCDGCHTAL 96 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 + +HA + + I V E R + L+ G W+VI+++ D Sbjct: 97 --VGTHADVEVVRTDM----------LTIGVKETRELVRRAQLSPAGGRWQVIVMEDADR 144 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A N LLK++EEP + +++L + + +L TIRSRC Sbjct: 145 LTEGAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRC 184 >gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] Length = 596 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 12/200 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK + A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAKGLNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC +A + +TG V +IR I Sbjct: 71 IGPDGNGGPTT----EPCGQCEHCVAISEGRHVDIMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP+ V F+ + + T+ S Sbjct: 120 ESVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALE 199 RC + + K L+ Sbjct: 180 RCQRFDLRRIEPEVMIKMLQ 199 >gi|315274479|ref|ZP_07869406.1| DNA polymerase III subunit delta' [Listeria marthii FSL S4-120] gi|313615880|gb|EFR89089.1| DNA polymerase III subunit delta' [Listeria marthii FSL S4-120] Length = 322 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG G GK A + L++ + A + N C+ Sbjct: 8 KIFSKSVRENRLSHGYLFEGSSGTGKKRTALWLAQSLFCLESTETELACGKCAN---CT- 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 64 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 112 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 113 DKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 169 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 170 SLTAAGISEQKARIYASITGSVEEA 194 >gi|227496710|ref|ZP_03926985.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226833807|gb|EEH66190.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 375 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 92/243 (37%), Gaps = 23/243 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E + L + R+ HA LF G +G GK T R L Sbjct: 7 RRYRPDTFQDVIGQEHVTAPLMAALRADRVTHAYLFSGPRGCGKTT-SARILARCLNCEQ 65 Query: 64 F-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 F + P +C P + +A+ + G VD+ R +R Sbjct: 66 FPTDTPCGIC------PSCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRERA 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 113 SFAPARDRFKIFILDEAHMVTPQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSRTH 172 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L L L + V A GSV + ++ D++I Sbjct: 173 HYPFRLVPPDILDGYLAHLCQAEGVQVGPGVFPLVTRAGGGSVRDTLSVM----DQLIGG 228 Query: 239 YID 241 +D Sbjct: 229 AVD 231 >gi|317506432|ref|ZP_07964235.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316255263|gb|EFV14530.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 322 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 13/195 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P ++ G + + + LS +GR+ HA LF G +G GK +L A V Sbjct: 5 RRYRPERLDQVLGQDHVTRPLSVALEAGRLGHAYLFSGPRGCGKTSLARILARSVNCERG 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C + C + D + L + + VD+ R +R Sbjct: 65 PTANPCGVC--ESCLALAEGGPGSV--DVIELDAASHGG---------VDDTRDLRDRAF 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 RV +ID + NALLK +EEPP ++F+ + +L TIRSR Sbjct: 112 YAPARSTKRVFIIDEAHMVTTAGFNALLKIVEEPPPHLIFVFATTEPEKVLPTIRSRTHH 171 Query: 184 IKFNSLSENNLYKAL 198 F L L + L Sbjct: 172 YPFRLLPPKTLRELL 186 >gi|85717152|ref|ZP_01048111.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A] gi|85696043|gb|EAQ33942.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A] Length = 827 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 35/194 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT--------LGF 52 ++ R + P L G E + + +S + +GR+ A + G +G+GK T L + Sbjct: 248 VLARKYRPASFDDLIGQEALVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 307 Query: 53 RYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLY---LSYSLNPKTGKWR 107 A +Q P +RM Q+ H A+ + + L TG Sbjct: 308 ELADGSVQGPT-----IRM----------PQLGVHCRAIMESRHIDVLEMDAASHTG--- 349 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 350 ----VDDVRQINDGVRYAPSSARYKVYIIDEVHMLSTPAFNAFLKTLEEPPEHAKFVFAT 405 Query: 168 HASPTILSTIRSRC 181 + T+ SRC Sbjct: 406 TEIRKVPVTVLSRC 419 >gi|317507529|ref|ZP_07965251.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316254176|gb|EFV13524.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 382 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 23/165 (13%) Query: 38 LFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LF G G G++ +A + + P+ R C AL Sbjct: 36 LFVGPPGSGRSVSALAFAAALQCEAPEPGCGVCRACR-------------SALAGSHPDV 82 Query: 97 YSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 LNP+ I+V EIR I + L A+ +WR+++++ D + +AANALLK++E Sbjct: 83 RKLNPQG----LSISVAEIREAIGWAARLPAS--HWRILVVEDADRLTESAANALLKAVE 136 Query: 156 EPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EP + +F+L + + I T+RSRC + + S + K L Sbjct: 137 EPASRAVFLLCAPSVDPQDIAVTLRSRCRLVSLGAPSPEQVAKVL 181 >gi|299141309|ref|ZP_07034446.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] gi|298577269|gb|EFI49138.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] Length = 382 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 36/250 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA----PV 69 + G ++ + L + R+ + ++ G G GK L +A ++L + ++ P Sbjct: 6 VIGQKEAKNRLRELVKEHRIPNTMMLCGPVGSGKLALALAFASYLLGERNDGESLLSDPR 65 Query: 70 RMCN----------PDP--CSPFVKQMASHALH-----DFLYLSYSLNPKT-----GKWR 107 + N PD P +K + A H DF + L K+ W Sbjct: 66 AIANAEAMLAKWEHPDLHFTYPVIKPTGTSADHKMTSDDFSQQWHELLLKSPYFSIDTWL 125 Query: 108 T---------VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 T +I E + LS+ ++ G ++V +I + MN AN LLK LEEPP Sbjct: 126 TAMDAANQQALIGAGESDELTRKLSIKSSQGGYKVSIIWLPERMNVECANKLLKLLEEPP 185 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 + +FI++ +L TI+SR I + + +L +AL + + + ++ +IA Sbjct: 186 HQTVFIMVCEEPELLLDTIKSRTQRIDIKRIDDASLEQALIERRAIDAENAHRITRIAG- 244 Query: 219 GSVARAIKIL 228 G+ RA++ L Sbjct: 245 GNWLRALENL 254 >gi|290958516|ref|YP_003489698.1| DNA polymerase III subunit delta' [Streptomyces scabiei 87.22] gi|260648042|emb|CBG71150.1| putative DNA polymerase III delta' subunit [Streptomyces scabiei 87.22] Length = 401 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + +M HA LF G G G+ T +A LQ +P R P F Sbjct: 40 ASKMTHAWLFTGPPGSGRTTAARAFA-AALQ----CVSPDRALGGSPGCGFC-----DGC 89 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H L +++ T I D++R +R + AN G W+VI+++ + +N +AN Sbjct: 90 HTALVGTHADVSTVAAVGTQILADDMRDTVRKSYTSPAN-GRWQVILVEDAERLNEKSAN 148 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A+LK++EEP + +++L + + +L TIRSRC Sbjct: 149 AVLKAVEEPAPRTVWMLCAPSLEDVLPTIRSRC 181 >gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] Length = 584 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC +A L +TG V +IR I Sbjct: 71 IGPDGNGGPTT----EPCGQCEHCVAIMEGRHVDVLEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ S Sbjct: 120 DSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|255320520|ref|ZP_05361701.1| DNA polymerase III delta prime subunit [Acinetobacter radioresistens SK82] gi|262378412|ref|ZP_06071569.1| DNA polymerase III [Acinetobacter radioresistens SH164] gi|255302492|gb|EET81728.1| DNA polymerase III delta prime subunit [Acinetobacter radioresistens SK82] gi|262299697|gb|EEY87609.1| DNA polymerase III [Acinetobacter radioresistens SH164] Length = 327 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 10/146 (6%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 H LLF G+ G GK + +L ++ P C+ + + S ++++ Sbjct: 30 HGLLFYGKSGCGKEAFSRHFLAWILCQNKQAQGPCGECSS------CQWLKSDTHPNYVH 83 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 +S + + K I +++IR ++ F+ T WRVIMI+P + +N AANALLK+L Sbjct: 84 IS--TDEENKKQNAKIRIEKIRDLQPFVQQTGEG--WRVIMIEPAEALNIAAANALLKTL 139 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEP ++++ IL++ + +TIRSR Sbjct: 140 EEPGERIVIILLADHYLKLPATIRSR 165 >gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans PD1222] gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus denitrificans PD1222] Length = 592 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKGLNC 69 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +PC +A + +TG V++IR I Sbjct: 70 TGPDGQGGPTT----EPCGVCEHCVAISEGRHVDVMEMDAASRTG-------VNDIREII 118 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 119 ESVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 178 Query: 180 RC 181 RC Sbjct: 179 RC 180 >gi|269976049|ref|ZP_06183053.1| DNA polymerase III subunit gamma/tau [Mobiluncus mulieris 28-1] gi|269935877|gb|EEZ92407.1| DNA polymerase III subunit gamma/tau [Mobiluncus mulieris 28-1] Length = 719 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 33/256 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + K L +GR++HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTT-SARIMARCL---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P P PC + +A+ + G VD+ R +R Sbjct: 63 CAEGP----TPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKAL------EQLKI----------MGWDSKRDFVKIAAYGSVARAI 225 F ++ L L E + + G S RD + I A Sbjct: 172 HHYPFRLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAE 231 Query: 226 KILHYDCDKIISSYID 241 +LHYD + Y D Sbjct: 232 PVLHYDRAVALLGYTD 247 >gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] Length = 664 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 17/175 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G E I + LS R+ A LF G +G GK + A + L + P Sbjct: 18 LVGQEAIAQTLSNAIRQDRIAPAYLFTGPRGTGKTSSARILAKSLNCLAGNVPTATPCGK 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C V+ D + + + N TG VD IR + + Sbjct: 78 C--DVCQGIVEGRT----LDVIEIDAASN--TG-------VDSIRDLIERAQFAPVQCRY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V +ID ++ +A N+LLK+LEEPP +V+F+L + + +L TI SRC F Sbjct: 123 KVYVIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQRFDF 177 >gi|148997056|ref|ZP_01824710.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP11-BS70] gi|147756756|gb|EDK63796.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP11-BS70] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VDEIR IR + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + Sbjct: 9 VDEIREIRDKSTYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELH 68 Query: 172 TILSTIRSRCLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 I +TI SR +F S+ ++ + LE+ I + + A G + A+ I Sbjct: 69 KIPATILSRVQRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 128 Query: 228 L 228 L Sbjct: 129 L 129 >gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] Length = 639 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 23/232 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QN 61 R + P L G E + + L+ + +GR+ A + G +G+GK T R L Q Sbjct: 25 RKYRPRSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTA-RILARALNYQT 83 Query: 62 PDFSKAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + M P C ++ H D + + + + TG +D++R I Sbjct: 84 DEIDQPTIHMGEPGIHCQAIME--GRHV--DVVEMDAASH--TG-------IDDVREIIA 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP+ V F+ + + T+ SR Sbjct: 131 QVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPVTVLSR 190 Query: 181 CLSIKFNSLSENNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKI 227 C + L L ++ + D+ R + AA GSV A+ + Sbjct: 191 CQRFDLRRVESATLMAHLTKIATAEHVEVDEDALR-LIARAAEGSVRDALSL 241 >gi|75674567|ref|YP_316988.1| DNA polymerase III subunits gamma and tau [Nitrobacter winogradskyi Nb-255] gi|74419437|gb|ABA03636.1| DNA polymerase III gamma/tau subunits [Nitrobacter winogradskyi Nb-255] Length = 611 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 35/194 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT--------LGF 52 ++ R + P L G E + + +S + +GR+ A + G +G+GK T L + Sbjct: 35 VLARKYRPACFDDLIGQEALVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 94 Query: 53 RYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLY---LSYSLNPKTGKWR 107 + A +Q P +RM Q+ H A+ + + L TG Sbjct: 95 QLADGSVQGPT-----IRM----------PQLGVHCRAIMESRHIDVLEMDAASHTG--- 136 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 137 ----VDDVRQINDSVRYAPSSARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 192 Query: 168 HASPTILSTIRSRC 181 + T+ SRC Sbjct: 193 TEIRKVPVTVLSRC 206 >gi|86605279|ref|YP_474042.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-3-3Ab] gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-3-3Ab] Length = 692 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 15/188 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + + L+ GR+ A LF G +G GK T R L + + P Sbjct: 22 VVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGK-TSSARILAKSL---NCEQGP----T 73 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PDPC + A A + TG VD IR + ++V Sbjct: 74 PDPCQVCSQCRAITAGSSLDVIEIDAASNTG-------VDNIRELIERAQFAPVNSRYKV 126 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + ++ Sbjct: 127 YVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDD 186 Query: 194 LYKALEQL 201 + L Q+ Sbjct: 187 MVAHLGQI 194 >gi|57241903|ref|ZP_00369843.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter upsaliensis RM3195] gi|57017095|gb|EAL53876.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter upsaliensis RM3195] Length = 505 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 35/206 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L S R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKAVSASLRYALNSKRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPV--RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYF 121 +A V N PC + +A AL GK +I +D R + Sbjct: 59 RALVCDEGPNATPCGTCKQCIA--ALE-------------GKHIDIIEMDAASNRGLEDI 103 Query: 122 LSLTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 SL T Y +++ +ID V + AANALLK+LEEPP V FIL + + + Sbjct: 104 QSLIEQTKYAPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPA 163 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SR +F ++++ + L+ + Sbjct: 164 TVLSRTQHFRFKQIAQSEILTHLKDI 189 >gi|229542302|ref|ZP_04431362.1| DNA polymerase III, delta prime subunit [Bacillus coagulans 36D1] gi|229326722|gb|EEN92397.1| DNA polymerase III, delta prime subunit [Bacillus coagulans 36D1] Length = 333 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 15/168 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMASHALH 90 RM HA LFEG +G GK + A +L F PV P + CS ++ SH H Sbjct: 25 RMAHAYLFEGGRGTGK-----KEAAQLLAKTLFCLQPVDDFFPCESCSNCLR--ISHGTH 77 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 ++L + P I ++I+ ++ S A ++ MI + M+ AAN+L Sbjct: 78 PDVHL---VEPDG----LSIKKEQIKALQQEFSKRAVESKRKLYMIVDAEKMSTGAANSL 130 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LK LEEP +L++ IL TI SRC + F + L K L Sbjct: 131 LKFLEEPNPGTTAVLMTTQLHRILPTILSRCQVVSFKPVPPAILKKQL 178 >gi|255021135|ref|ZP_05293187.1| DNA polymerase III delta prime subunit [Acidithiobacillus caldus ATCC 51756] gi|254969395|gb|EET26905.1| DNA polymerase III delta prime subunit [Acidithiobacillus caldus ATCC 51756] Length = 327 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 42/75 (56%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D +R FL+ G R + ID + ++ AANALLK LEEP +L S A Sbjct: 91 IGIDAVRDALEFLAYRPQLGARRWLRIDSAERLSVAAANALLKGLEEPAPGAHLLLSSAA 150 Query: 170 SPTILSTIRSRCLSI 184 S +L TIRSRCL + Sbjct: 151 SARLLPTIRSRCLRL 165 >gi|297572229|ref|YP_003698003.1| DNA polymerase III subunit delta' [Arcanobacterium haemolyticum DSM 20595] gi|296932576|gb|ADH93384.1| DNA polymerase III, delta prime subunit [Arcanobacterium haemolyticum DSM 20595] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 9/122 (7%) Query: 109 VITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 I+ +E+R R +++ T +G WR+ +I+ D M N LLK++EEP + +++L Sbjct: 105 TISAEEVREYVARSYVAPT--SGAWRIFVIEDADRMLTRTTNVLLKAIEEPGARTVWMLC 162 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS---VAR 223 + A+ +L TIRSRC +I + + + + L +K G DSK + A S VAR Sbjct: 163 TAAAADVLPTIRSRCRNINLVTPHASLVAELL--MKRDGIDSKTAHIVARAAQSHIGVAR 220 Query: 224 AI 225 A+ Sbjct: 221 AL 222 >gi|316932084|ref|YP_004107066.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris DX-1] gi|315599798|gb|ADU42333.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris DX-1] Length = 624 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 51/279 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTA-RILARALN 87 Query: 60 -QNPDFS-KAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWR 107 + PD S K P M H +H D L + + + TG Sbjct: 88 YELPDGSVKGPT------------IHMPVHGVHCKAIMESRHMDVLEMDAASH--TG--- 130 Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VD++R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + Sbjct: 131 ----VDDVRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFAT 186 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI--AAYGSVARAI 225 + T+ SRC + + L L + ++++ V++ A G +ARA Sbjct: 187 TEIRKVPVTVLSRCQRFDLRRVEADVLMNHLSNI------AQKEGVEVEPEALGIIARAA 240 Query: 226 KILHYDC----DKIISSYIDLIHIPRQEYALQKMQQIAD 260 + D D+ I+ L+ + A+++M +AD Sbjct: 241 EGSVRDSLSLFDQAIAHAAGLV----RADAVRQMLGLAD 275 >gi|212550612|ref|YP_002308929.1| DNA polymerase III delta' subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548850|dbj|BAG83518.1| DNA polymerase III delta' subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 378 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 108/268 (40%), Gaps = 46/268 (17%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G I++ L Q G + HA L G QG G L Y ++ K Sbjct: 4 RNIVGQTIIKQRLIQSVKDGFIPHAQLITGNQGTGTLILALAYIRYLYCTNRQEKDACGT 63 Query: 72 CNPDPCSPFVK------------------QMASHAL-HDFL--------------YLSYS 98 C C F K + AL HDFL + S+ Sbjct: 64 C--PSCQKFDKLVHPDLHFIFPIINKKRREDKKEALCHDFLPEWRNFVLTTPYADFTSWL 121 Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 +N + +I E I L A ++ ++I + M+ AA+ LLK LEEPP Sbjct: 122 INIGEENAQGLIYARESDDIMRKLRFKAYEADYKSVIIWLPEKMHETAASRLLKLLEEPP 181 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVK 214 +K +F+L+S I++TI SR + +++ +L++ L++ + W + R Sbjct: 182 EKTVFLLVSEEPDKIIATICSRMQVMAVPPIADQDLFQTLQEKYDIPDQDIWHAIR---- 237 Query: 215 IAAYGSVARAIKILHYDCDKIISSYIDL 242 A GS +A KIL D SY++L Sbjct: 238 -LAEGSYEKATKILSSVEDN--ESYLNL 262 >gi|154497738|ref|ZP_02036116.1| hypothetical protein BACCAP_01714 [Bacteroides capillosus ATCC 29799] gi|150273236|gb|EDN00381.1| hypothetical protein BACCAP_01714 [Bacteroides capillosus ATCC 29799] Length = 596 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 24/197 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V G I L + +GR+ HA LF G G +L Sbjct: 12 RSFDDV-----VGQSHITDTLKRQVATGRLSHAYLF-----TGTRGTGKTTCAKILARAV 61 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV + +PC+ P + + ++ D L L + N VD++R +R Sbjct: 62 NCEHPV---DGNPCNQCPSCLGIENGSILDVLELDAASNNG---------VDQVRALRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T RV ++D V ++ A NALLK LEEPP+ ++FIL + + +TI+SRC Sbjct: 110 AVYTPAAVRKRVYIVDEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRC 169 Query: 182 LSIKFNSLSENNLYKAL 198 F + ++ + L Sbjct: 170 QQFAFKRILPGDIARRL 186 >gi|167648530|ref|YP_001686193.1| DNA polymerase III subunits gamma and tau [Caulobacter sp. K31] gi|167350960|gb|ABZ73695.1| DNA polymerase III, subunits gamma and tau [Caulobacter sp. K31] Length = 632 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + SGR+ HA + G +G+GK T A + Sbjct: 85 VLARKYRPRTFEDLIGQEAMVRTLANAFSSGRIAHAFMLTGVRGVGKTTTARLLARALNY 144 Query: 61 NPDFSKAPVRMCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 D P D C ++ H D L L + K VDE+R + Sbjct: 145 ETDTVHQPSVDLTIDGRHCKAIIE--GRH--MDVLELDAASRTK---------VDEMREL 191 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + ++V +ID V ++ A NALLK+LEEPP FI + + TI Sbjct: 192 LDGVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTIL 251 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKIL 228 SR + + L K ++ G + D + + AA GSV + +L Sbjct: 252 SRTQRFDLRRVEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLL 305 >gi|307328249|ref|ZP_07607427.1| DNA polymerase III, delta prime subunit [Streptomyces violaceusniger Tu 4113] gi|306886083|gb|EFN17091.1| DNA polymerase III, delta prime subunit [Streptomyces violaceusniger Tu 4113] Length = 406 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 25/200 (12%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMAS 86 S +M HA LF G G G+AT +A LQ +PD + C D C + + Sbjct: 43 SSKMTHAWLFTGPPGSGRATAARAFA-AALQCVSPDRALGGAPGCGFCDGC--HTALVGT 99 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA + + I V E R + L+ G W+VI+++ D + A Sbjct: 100 HADVEVVRTDM----------LTIGVKETRELVRRAQLSPAGGRWQVIVMEDADRLTEGA 149 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 N LLK++EEP + +++L + + +L TIRSRC + + +A+ L + Sbjct: 150 GNVLLKAVEEPAPRTVWLLCTPSLEDVLPTIRSRCRLLTLRTPP----VEAVADLLV--- 202 Query: 207 DSKRDFVKIAAYGSVARAIK 226 +RD + S ARA + Sbjct: 203 --RRDGIDPGLAASAARATQ 220 >gi|126695486|ref|YP_001090372.1| DNA polymerase III subunit delta' [Prochlorococcus marinus str. MIT 9301] gi|126542529|gb|ABO16771.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9301] Length = 320 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 39/252 (15%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 V F +E++ L + + +F G +G+GK ++ + + Sbjct: 4 VKKNNFFLNEEVNTILKNIIKNKSFTNGYIFYGAEGLGKKQTALQFIQEIFKESS----- 58 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYL----------SYSLNP----KTGKWRTVITVDE 114 P +++ ++ DFL + S S +P K+G +I + + Sbjct: 59 -------PSENIEERITNNNHPDFLIIEPDSLLATKSSGSFDPEKTLKSG--YEIIKIAQ 109 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR I+ FLS + ++++I +N A+N LLK+LEEP + FIL++ +L Sbjct: 110 IRNIKTFLSQKSINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGI-FILLTSKLNLLL 168 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQ------LKIMGWDSKRDFVKIAAYGS---VARAI 225 TI SRC ++F S S + L++ LKI D + +A GS + + I Sbjct: 169 DTIISRCQIVRFRSFSNKQIKSILKEYLDTSKLKINAKLKFEDLIN-SANGSPNQLLKNI 227 Query: 226 KILHYDCDKIIS 237 +I + D+IIS Sbjct: 228 EIWNDFSDEIIS 239 >gi|311112928|ref|YP_003984150.1| DNA-directed DNA polymerase III subunit delta' [Rothia dentocariosa ATCC 17931] gi|310944422|gb|ADP40716.1| DNA-directed DNA polymerase III subunit delta' [Rothia dentocariosa ATCC 17931] Length = 379 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++D+ R + + G WRVI+++ + M +N LLK++EEPP +++L + + Sbjct: 90 ISIDDARDLVMKAQDRPSVGRWRVILMEDTERMPERTSNVLLKAIEEPPPHTIWLLTAPS 149 Query: 170 SPTILSTIRSRCLSIKF 186 +L TIRSRC ++ Sbjct: 150 PTDVLVTIRSRCRPVQL 166 >gi|89056367|ref|YP_511818.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1] gi|88865916|gb|ABD56793.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1] Length = 584 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 23/237 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G E + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPATFADLIGQEAMVRTLKNAFDADRIAQAFMLTGIRGTGKTTTARIIAKGLNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P DPC +A + H D + + + N R I I Sbjct: 71 IGADGEGGP----TTDPCGVCQNCVAITEGRHVDVMEMDAASNTGVQNIRDAI----IET 122 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + Y A +++ +ID V ++ +A NALLK+LEEPP V F+ + + T+ Sbjct: 123 VSY----RAAQARYKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFLFATTEIRKVPVTV 178 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDS---KRDFVKI---AAYGSVARAIKIL 228 SRC + + L+ +I G +S D V + AA GSV A+ +L Sbjct: 179 LSRCQRFDLRRIEPEVMIAHLQ--RIAGLESAEIAEDAVALITRAAEGSVRDAMSLL 233 >gi|294056287|ref|YP_003549945.1| DNA polymerase III gamma/tau subunits-like protein [Coraliomargarita akajimensis DSM 45221] gi|293615620|gb|ADE55775.1| DNA polymerase III gamma/tau subunits-like protein [Coraliomargarita akajimensis DSM 45221] Length = 327 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 G+W + +RR+ + T+N G +V ++ D MN +ANA LK+LEEPP Sbjct: 90 GEW----PRNSMRRLVLDIQKTSNQGGRKVGILFDADRMNVQSANAFLKTLEEPPAGTTL 145 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSEN 192 L++ +L TIRSRCL+ + + SE Sbjct: 146 FLLTTRPYDLLDTIRSRCLNFRVPTASEG 174 >gi|302864960|ref|YP_003833597.1| DNA polymerase III subunit delta' [Micromonospora aurantiaca ATCC 27029] gi|302567819|gb|ADL44021.1| DNA polymerase III, delta prime subunit [Micromonospora aurantiaca ATCC 27029] Length = 423 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V+E+R + + + G W++++I+ D + A NALLK++EEPP + +F+L + + Sbjct: 126 IGVNEMRALVLRAASAPSGGRWQIVIIEDADRLTEAAGNALLKAIEEPPPRTVFLLCAPS 185 Query: 170 S-PTILS-TIRSRCLSIKF 186 + P +S TIRSRC + Sbjct: 186 THPDDISVTIRSRCRVVPL 204 >gi|15893421|ref|NP_346770.1| DNA polymerase III subunits gamma and tau [Clostridium acetobutylicum ATCC 824] gi|15022952|gb|AAK78110.1|AE007525_4 DNA-directed DNA polymerase, III chain (dnaX) [Clostridium acetobutylicum ATCC 824] gi|325507533|gb|ADZ19169.1| DNA polymerase III subunits gamma and tau [Clostridium acetobutylicum EA 2018] Length = 542 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +VD+IR I + + ++V +ID V +++ A NA LK+LEEPPQ V+FIL + Sbjct: 100 SVDDIRNIIDDVQYPPHESKFKVYIIDEVHMLSQGAVNAFLKTLEEPPQNVVFILATTDP 159 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 + TI SRC F + ++ L ++ + K F + G +AR Sbjct: 160 QKLPVTILSRCQRFDFKRIKRESMIGRLREI----VNEKGVFADDRSLGVIAR 208 >gi|332178205|gb|AEE13894.1| DNA polymerase III, subunits gamma and tau [Thermodesulfobium narugense DSM 14796] Length = 493 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 17/198 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P+ + G + ++ L H LF G +G GK T R L Sbjct: 6 RKYRPITFDDMIGQDVVKTVLENASKLDDPPHVYLFAGMRGTGKTTAA-RIFAKALNCTS 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K P C + C F L SL+ T +VD+ R +R Sbjct: 65 EGKKPCLNC--ESCKKF--------------LEGSLDYVEIDAATHSSVDDARSLREMAL 108 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + + +R+ +ID V ++ +A +ALLK +EEPP +FI + + TI SR L Sbjct: 109 IAPMSSKYRIFVIDEVHRLSPSAFDALLKIIEEPPPFSIFIFATTEPHKVPKTILSRVLR 168 Query: 184 IKFNSLSENNLYKALEQL 201 + F+ ++ L L+++ Sbjct: 169 LDFSPINPELLASYLDKI 186 >gi|323359122|ref|YP_004225518.1| ATPase [Microbacterium testaceum StLB037] gi|323275493|dbj|BAJ75638.1| ATPase [Microbacterium testaceum StLB037] Length = 392 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 25/172 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 +D V+ Q E +E + + HA L G G G++TL + +A ++ P Sbjct: 19 WDAVWGQ----PEAVETLRAAASDPAALAHAWLITGPPGSGRSTLAYAFAAALIAEPGDE 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 A +Q+ + D L + VI +DE RR+ S Sbjct: 75 HA-------------QRQVIARTHPDLTALRTE--------QVVIRIDEARRLVERASFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + G RVI+++ D M +N LLK+LEEPP++ +++L + + +L TI Sbjct: 114 PSLGRHRVIVVEDADRMAERTSNVLLKALEEPPEQTVWVLCAPSDADLLPTI 165 >gi|297243104|ref|ZP_06927042.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis AMD] gi|296889315|gb|EFH28049.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis AMD] Length = 801 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 42/265 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + LS+ G++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P PC K +A+ + G VD+ R +R Sbjct: 63 CEKGPTSH----PCGECQSCKDLATGGAGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----------QLKIM------GWDSKRDFVKI-------AAY 218 F + + LE Q ++ G S RD + + A Sbjct: 172 HHYPFRLVPPEVMSPYLEDICKKEGILPQAGVLRLVMRAGAGSMRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYID 241 GS++ A+ +L + + +IS +ID Sbjct: 232 GSISLDSAVALLGFTPNSLISEFID 256 >gi|150021762|ref|YP_001307116.1| DNA polymerase III gamma/tau subunits-like protein [Thermosipho melanesiensis BI429] gi|149794283|gb|ABR31731.1| DNA polymerase III gamma/tau subunits-like protein [Thermosipho melanesiensis BI429] Length = 260 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D++R+I+ FLS + ++G V++ D + M A N++LK LEEPP+ L IL++ + Sbjct: 51 IKIDDVRKIQEFLSFSVDSGKKIVVLFDA-EKMLPEAENSMLKILEEPPEYALIILVTTS 109 Query: 170 SPTILSTIRSRC 181 ++ TIRSR Sbjct: 110 WNSLYPTIRSRL 121 >gi|283782639|ref|YP_003373393.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis 409-05] gi|283441569|gb|ADB14035.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis 409-05] Length = 801 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 42/265 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + LS+ G++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P PC K +A+ + G VD+ R +R Sbjct: 63 CEKGPTSH----PCGECQSCKDLATGGAGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKIM---GWDSKRDFVKI-------AAY 218 F + + LE L+++ G S RD + + A Sbjct: 172 HHYPFRLVPPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYID 241 GS++ A+ +L + + +IS +ID Sbjct: 232 GSISLDSAVALLGFTPNSLISEFID 256 >gi|22298061|ref|NP_681308.1| DNA polymerase III subunit delta' [Thermosynechococcus elongatus BP-1] gi|22294239|dbj|BAC08070.1| DNA polymerase III delta prime subunit [Thermosynechococcus elongatus BP-1] Length = 311 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 22/201 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDF 64 F PV G + L+ ++ A LF G +G+G+A + +L + D Sbjct: 4 FRPV-----IGQPTAIQLLTYALDRRQIAPAYLFVGPEGVGRALTARCFLQAILNEAKDL 58 Query: 65 SKAP-VRMCNPDPCSPFVKQMASHALHDFLYLSYSL---NPKTGKWRTVITVDEIRRIRY 120 S P V P ++++ LY L + + + I +++IR++ Sbjct: 59 SNHPDVLWMEP-----------TYSVQGTLYTRRQLLAADKEIPRSAPQIRLEQIRQLSR 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 LS ++++ + MN AANALLK+LEEP + L ILI+ + +L+TI SR Sbjct: 108 HLSQPPMRAPRSLVVLTQAETMNEAAANALLKTLEEPGRATL-ILIAPSPSALLNTIVSR 166 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C I F LS + + L Q+ Sbjct: 167 CQKIPFYPLSRQAVEQVLRQV 187 >gi|116511256|ref|YP_808472.1| DNA polymerase III subunit delta' [Lactococcus lactis subsp. cremoris SK11] gi|116106910|gb|ABJ72050.1| DNA polymerase III, delta prime subunit [Lactococcus lactis subsp. cremoris SK11] Length = 286 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 18/157 (11%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 G++ HA LF G G G L + + +NP+ S P C C V Q L Sbjct: 21 GKLSHAYLFSG--GFGSFELAIWLSQALFCENPENS-LPCGHCRS--CR-LVAQQEFADL 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H + P +T +IR + S + G +V++ + M+ NAANA Sbjct: 75 H-------IVEPDGQTIKTA----QIRDLTQVFSESGYEGKQQVLLFREAEKMHPNAANA 123 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LLKS+EEP +++ L++ IL TI+SR I F Sbjct: 124 LLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF 160 >gi|241895198|ref|ZP_04782494.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC 33313] gi|241871504|gb|EER75255.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC 33313] Length = 334 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 15/176 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK 82 L + S ++ HA LF G G G+ + A ++ Q+ P C D C V+ Sbjct: 21 LQKALASQQLAHAFLFTGPAGRGQELVADWLAMRLMCQHVTADGQPDGTC--DQCQRIVQ 78 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 H D + ++P GK I VD++R ++ + TA G ++ ++ D M Sbjct: 79 ----HEHPDVI----EVHPD-GK---SIKVDQVRFLKEEFTKTAVEGQQKIFIVAGADTM 126 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +AAN LLK +EEP ILI+ IL TI SR I F ++ + L Sbjct: 127 TTSAANGLLKFIEEPAPGQTAILIAENRAQILPTIISRTQVIAFAAVGNEQFEEEL 182 >gi|183222818|ref|YP_001840814.1| DNA polymerase III subunit gamma/tau [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909573|ref|YP_001961128.1| DNA polymerase III subunit gamma and tau [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774249|gb|ABZ92550.1| DNA polymerase III gamma and tau subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781240|gb|ABZ99538.1| DNA polymerase III subunit gamma/tau [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 310 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 17/165 (10%) Query: 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 +L+F G G+GK R+A +L C D C F++ + DF+ Sbjct: 34 SLIFYGPDGVGKWLAAERFARQILC---LEGTSCGHC--DSCRQFMRGIHP----DFIQF 84 Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLS----LTANTGYWRVIMIDPVDGMNRNAANALL 151 N GK + E IR+ LS +T +R+++ + +N A LL Sbjct: 85 PRRKNIAIGKEKD----PEEFTIRWLLSARIPFKPHTSDYRIVLFPEANRINNEAETTLL 140 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 K+LEEPP FILI + + TI SR + I F+ L ++ + K Sbjct: 141 KTLEEPPPHTKFILIVNDLHNLKQTIVSRSVCIPFHYLPQDEIKK 185 >gi|300744313|ref|ZP_07073332.1| DNA polymerase III, delta' subunit [Rothia dentocariosa M567] gi|300380038|gb|EFJ76602.1| DNA polymerase III, delta' subunit [Rothia dentocariosa M567] Length = 379 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++D+ R + + G WRVI+++ + M +N LLK++EEPP +++L + + Sbjct: 90 ISIDDARDLVMKAQDRPSIGRWRVILMEDTERMPERTSNVLLKAIEEPPPHTIWLLTAPS 149 Query: 170 SPTILSTIRSRCLSIKF 186 +L TIRSRC ++ Sbjct: 150 PTDVLVTIRSRCRPVQL 166 >gi|282889969|ref|ZP_06298504.1| hypothetical protein pah_c008o060 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500162|gb|EFB42446.1| hypothetical protein pah_c008o060 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 367 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 32/218 (14%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--PDFSK 66 Y + G++ I+ +L + + +LLF G +GIGK+ +A +L N D K Sbjct: 5 TYFSHICGNDPIKHYLIKMIEKNAIGQSLLFAGPEGIGKSLFAKAFAEILLTNGSADQRK 64 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 +PD LH Y K G + ++D +R++ + L Sbjct: 65 QVKAETHPD-------------LH-----IYRPEGKLG----MHSIDAMRQLTEEIYLVP 102 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V +I + M +ANALLK+ EEP + IL++ +L TIRSR +I F Sbjct: 103 YQAKRKVFIIHEAERMLPYSANALLKTFEEPALDCVIILLTSLPENLLPTIRSRFQTIYF 162 Query: 187 NSLS--------ENNLYKALEQLKIMGWDSKRDFVKIA 216 + + N K ++ + + SK FV+ A Sbjct: 163 QEVEKKYLVKFVQENFQKTEQEAQTIAASSKGSFVQAA 200 >gi|255556667|ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223541434|gb|EEF42984.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 1270 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 17/202 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ + G + + L GR+ LF+G +G GK + +A + Sbjct: 455 LSQKYKPLFFGEVIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTSTARIFASALNCI 514 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C CS F+ A L+ N K +D++R + Sbjct: 515 STEETKPCGYCRD--CSDFISGKARD-----LWEVDGTNKKG--------IDKVRHLLKK 559 Query: 122 LSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +S TG ++V +ID + A LK LEEPPQ+V+FI I+ + T++S Sbjct: 560 VSQWPPTGSSRYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFITTDPDNVPRTVQS 619 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RC FN + + ++ L ++ Sbjct: 620 RCQKYLFNKIKDGDIVARLRKV 641 >gi|167465485|ref|ZP_02330574.1| DNA polymerase III gamma and tau subunits [Paenibacillus larvae subsp. larvae BRL-230010] Length = 510 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 45/79 (56%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V+EIR IR + ++V +ID V + A NALLK+LEEPP+ V+FIL + Sbjct: 34 VEEIRDIRDKVKYAPTEVRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVIFILATTEPH 93 Query: 172 TILSTIRSRCLSIKFNSLS 190 + +TI SRC F +S Sbjct: 94 KLPATIISRCQRFDFRRIS 112 >gi|321313701|ref|YP_004205988.1| DNA polymerase III subunit delta' [Bacillus subtilis BSn5] gi|291482402|dbj|BAI83477.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. natto BEST195] gi|320019975|gb|ADV94961.1| DNA polymerase III subunit delta' [Bacillus subtilis BSn5] Length = 329 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 22/202 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEG++G GK A D ++ P C K++ S H Sbjct: 27 RLSHAYLFEGKKGTGKLDAALLLAKSFFCLEDGAE-PCESCRN------CKRIES-GNHP 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L+L + P I +I+ ++ S T + ++ +I D M NAAN+LL Sbjct: 79 DLHL---VQPDG----LSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K LEEP + + +LI+ +L TI SRC ++ F L KA+E +++ D Sbjct: 132 KFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQP----KAIED-RLIEQDVSPH 186 Query: 212 FVKIAA--YGSVARAIKILHYD 231 ++ A +VA A+++ D Sbjct: 187 MARLLANMTNNVAEAVELSRND 208 >gi|241889547|ref|ZP_04776846.1| DNA polymerase III subunit delta' [Gemella haemolysans ATCC 10379] gi|241863854|gb|EER68237.1| DNA polymerase III subunit delta' [Gemella haemolysans ATCC 10379] Length = 278 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 30/178 (16%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGI--GKATLGFRYAGHVLQNPD---FSKAPVRMCNPDP 76 K L+ + ++ HA L GE + + L F A L+N D +S + CN Sbjct: 11 KSLTNTLKTDKLSHAYLIVGEDSLYSDEFILSFVKAIFCLENKDKEFYSCENCKNCNSIN 70 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG---YWRV 133 +V DF LS T I DEI+ ++ LS+ + G YW Sbjct: 71 HGNYV---------DFYKLS---------SETSIKKDEIQTLKSDLSVKSFYGKKIYW-- 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 I ++ M AAN+LLK LEEP ++ IL IL TI SRC +K SE Sbjct: 111 --IKDIEKMTEQAANSLLKFLEEPEDDIIAILSCKNISAILPTIISRCQQVKLIGHSE 166 >gi|138893703|ref|YP_001124156.1| DNA polymerase III subunit delta' [Geobacillus thermodenitrificans NG80-2] gi|196250746|ref|ZP_03149433.1| DNA polymerase III, delta prime subunit [Geobacillus sp. G11MC16] gi|134265216|gb|ABO65411.1| DNA polymerase III delta subunit [Geobacillus thermodenitrificans NG80-2] gi|196209696|gb|EDY04468.1| DNA polymerase III, delta prime subunit [Geobacillus sp. G11MC16] Length = 330 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 14/179 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + K L GR+ HA LFEG++G GK A + AP C Sbjct: 15 VAKMLQSGLEKGRISHAYLFEGQRGTGKKAASLLLAKSLFCLSPSGIAPCLECR------ 68 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 +++ S D +S P G I ++I ++ + TA ++ +++ Sbjct: 69 NCRRIESGNHPDVRVIS----PDGGS----IKKEQIEWLQQEFTKTAVESDKKMYIVEHA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D M +AAN+LLK LEEP + +L++ +L T+ SRC + F L L L Sbjct: 121 DQMTTSAANSLLKFLEEPHPGTVAVLLTEQYHRLLETVISRCQVLSFRPLPPAELADQL 179 >gi|298253202|ref|ZP_06976994.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis 5-1] gi|297532597|gb|EFH71483.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis 5-1] Length = 796 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 42/265 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + LS+ G++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P PC K +A+ + G VD+ R +R Sbjct: 63 CEKGPTSH----PCGECQSCKDLATGGAGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKIM---GWDSKRDFVKI-------AAY 218 F + + LE L+++ G S RD + + A Sbjct: 172 HHYPFRLVPPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYID 241 GS++ A+ +L + + +IS +ID Sbjct: 232 GSISLDSAVALLGFTPNSLISEFID 256 >gi|238894133|ref|YP_002918867.1| DNA polymerase III subunit delta' [Klebsiella pneumoniae NTUH-K2044] gi|238546449|dbj|BAH62800.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 334 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLNGMGGEALIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y+L+P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YALSPEKGK--SALGIDAVRDVNEKLYEHARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACEEPARLLTTLRSRC 159 >gi|152969651|ref|YP_001334760.1| DNA polymerase III subunit delta' [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954500|gb|ABR76530.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 334 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLNGMGGEALIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y+L+P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YALSPEKGK--SALGIDAVRDVNEKLYEHARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACEEPARLLTTLRSRC 159 >gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str. Houston-1] gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1] Length = 646 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 23/235 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTA-RILARALN 70 Query: 60 -QNPDFSKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + D + P + N + C+ ++ H D + + + TG +D+IR Sbjct: 71 YKTKDIDQ-PTTVLNTLGEHCTQIIE--GRHI--DVIEMDAA--SHTG-------IDDIR 116 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ A N LLK+LEEPP V FI + + T Sbjct: 117 EIIEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPIT 176 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 I SRC + L L Q+ + D + AA GS A+ I Sbjct: 177 ILSRCQRFDLRRIESAVLSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSI 231 >gi|148358931|ref|YP_001250138.1| DNA polymerase III subunit delta' [Legionella pneumophila str. Corby] gi|296106979|ref|YP_003618679.1| DNA polymerase III, delta prime subunit [Legionella pneumophila 2300/99 Alcoy] gi|148280704|gb|ABQ54792.1| DNA polymerase III, delta prime subunit [Legionella pneumophila str. Corby] gi|295648880|gb|ADG24727.1| DNA polymerase III, delta prime subunit [Legionella pneumophila 2300/99 Alcoy] Length = 301 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I +D+IR ++ LT + I+I+ + MN A+NALLK LEEP Q +FIL++ Sbjct: 83 IIKIDQIRGLQSTAFLTPQRTNHKFIIIESAESMNIAASNALLKILEEPAQHTIFILLAQ 142 Query: 169 ASPTILSTIRSRCLSIKFNSLSE---NNL 194 I T+ SRC +F E NNL Sbjct: 143 QIGNIPPTVLSRCQITQFAVFDELPCNNL 171 >gi|329999484|ref|ZP_08303438.1| DNA polymerase III, delta' subunit [Klebsiella sp. MS 92-3] gi|328538310|gb|EGF64449.1| DNA polymerase III, delta' subunit [Klebsiella sp. MS 92-3] Length = 334 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLNGMGGEALIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y+L+P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YALSPEKGK--SALGIDAVRDVNEKLYEHARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACEEPARLLTTLRSRC 159 >gi|296329532|ref|ZP_06872018.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672729|ref|YP_003864400.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. spizizenii str. W23] gi|296153275|gb|EFG94138.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410972|gb|ADM36090.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. spizizenii str. W23] Length = 329 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 15/158 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEG++G GK A D ++ P C K++ S H Sbjct: 27 RLSHAYLFEGKKGTGKLDAALLLAKSFFCLEDGAE-PCENCRN------CKRIES-GNHP 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L+L + P I +I+ ++ S T + ++ +I D M NAAN+LL Sbjct: 79 DLHL---VQPDG----LSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 K LEEP + + ILI+ +L TI SRC ++ F L Sbjct: 132 KFLEEPNKDTMAILITEQPQRLLDTIISRCQTLPFQPL 169 >gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] Length = 607 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 20/242 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 17 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 76 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P DPC A + +TG V +IR I Sbjct: 77 IGEDGQGGPTT----DPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 126 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 185 Query: 180 RCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKI 235 RC + + L ++ G D D + + AA GS A +L D+ Sbjct: 186 RCQRFDLRRIEPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLL----DQA 241 Query: 236 IS 237 IS Sbjct: 242 IS 243 >gi|262043202|ref|ZP_06016338.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039480|gb|EEW40615.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 334 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLNGMGGEALIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y+L+P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YALSPEKGK--SALGIDAVRDVNEKLYEHARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACEEPARLLTTLRSRC 159 >gi|226227631|ref|YP_002761737.1| DNA polymerase III delta' subunit [Gemmatimonas aurantiaca T-27] gi|226090822|dbj|BAH39267.1| DNA polymerase III delta' subunit [Gemmatimonas aurantiaca T-27] Length = 363 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 38/215 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF--------------------- 52 L+GH + + L+ GR+ +LLF+G +G+GK LG Sbjct: 6 LYGHHPLRQRLTAAASDGRLPASLLFQGRRGVGKQRLGLWLGQFLLCDRATTEGLREPCG 65 Query: 53 -----RYAGHVLQNPD---FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG 104 RYA + +PD F P R+ + D + VK + A+ + + +P G Sbjct: 66 ACQHCRYAERGV-HPDLHWFFPRP-RLKDGDASTDDVKADVAEAVAERMGDEGLWSPPPG 123 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM-----NRNAANALLKSLEEPPQ 159 + V +R + + SL V ++ + M AANA LK LEEPP Sbjct: 124 T--EGLYVATVRALVHMASLRPAMARRAVFVVGDAERMVSQEGADQAANAFLKLLEEPPN 181 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +L + +L TI+SR +S++ L+ ++ Sbjct: 182 GTTLLLTTSEPGALLPTIKSRVVSVRVPPLTPADM 216 >gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] Length = 588 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +PC A + +TG V +IR I Sbjct: 71 IGPDGQGGPTT----EPCGQCEHCRAIMEGRHVDVMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ NA NALLK+LEEPP V FI + + T+ S Sbjct: 120 ESVNYRAASARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|71065870|ref|YP_264597.1| DNA polymerase III, delta prime subunit [Psychrobacter arcticus 273-4] gi|71038855|gb|AAZ19163.1| DNA polymerase III, delta prime subunit [Psychrobacter arcticus 273-4] Length = 366 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 23/175 (13%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HALL G QG+GK +R +L + P+ C +++ +L Sbjct: 34 HALLAAGMQGMGKRAFVWRLVAWLLCRAR-DEHPLGACGHCESCQWLRSGTHPSLQALPL 92 Query: 95 LSYSLNPKTGKWRTV--------------------ITVDEIRRIRYFLSLTANTGYWRVI 134 +S ++ + V I VDEIR ++ F+ G R+ Sbjct: 93 ISLPISADNAHTQEVASGTAKDKKTTKAASNGSLKIKVDEIRALQPFI-YQGGQGM-RIC 150 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++D + M AANALLK+LEEP +V LIS A +L TI+SR + ++ Sbjct: 151 VLDHAEQMTIAAANALLKTLEEPQAQVHLFLISDAPAQLLPTIKSRVQQLSLQTI 205 >gi|326693436|ref|ZP_08230441.1| DNA polymerase III subunits gamma and tau [Leuconostoc argentinum KCTC 3773] Length = 589 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 40/239 (16%) Query: 9 VYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 VY R F G E I + L + + HA LF G +G GK + +A V Sbjct: 9 VYRPRTFDDMIGQEVITQTLKNAIETEQTGHAYLFSGPRGTGKTSAAKIFAREV------ 62 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 DP Q + D + + N + V+++R I + Sbjct: 63 -------NGIDP------QTDDAQIPDIVEFDAASNSR---------VEDMRDILANVDY 100 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID V ++ +A NALLK+LEEPP V FIL + + TI SR Sbjct: 101 APIEAKYKVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRF 160 Query: 185 KFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDKI 235 +F ++ + L L Q + D + A G + A+ IL Y D++ Sbjct: 161 EFKRIATDVIQARLADILTQRDVAYDDDALRIIANVAEGGMRDALSILDQVMAYGTDRV 219 >gi|297159270|gb|ADI08982.1| DNA polymerase III subunit delta [Streptomyces bingchenggensis BCW-1] Length = 423 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V E R + L+ G W+VI+++ D + A N LLK++EEP + +++L + + Sbjct: 130 IGVKETRDLVRRAQLSPAGGRWQVIVLEDADRLTEGAGNVLLKAVEEPAPRTVWLLCTPS 189 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 +L TIRSRC + + + + L +RD ++ SVARA + Sbjct: 190 LEDVLPTIRSRCRLLTLRTPPVDAVADLL---------VRRDGIEPELAASVARATQ 237 >gi|227505638|ref|ZP_03935687.1| DNA polymerase III subunit delta [Corynebacterium striatum ATCC 6940] gi|227197791|gb|EEI77839.1| DNA polymerase III subunit delta [Corynebacterium striatum ATCC 6940] Length = 412 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV E R + + + WRV++ + D AANALLK++EEPP++ + I+++ + Sbjct: 115 ITVGEAREVIGRAASLPSVAPWRVVIFNKADRFRNEAANALLKTVEEPPERTVIIMVAPS 174 Query: 170 S-PTILS-TIRSRCLSIKFNSLSENNLYKAL 198 P S T+RSRC + + S + + K L Sbjct: 175 EDPQDFSQTLRSRCRHLYIPAPSVDGIVKQL 205 >gi|302535723|ref|ZP_07288065.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. C] gi|302444618|gb|EFL16434.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. C] Length = 443 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTAPLMQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P PDPC + +A + + G VD+ R +R Sbjct: 74 CEQGP----TPDPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 183 HHYPFRLVPPGTLRDYLGEV 202 >gi|257069947|ref|YP_003156202.1| DNA polymerase III, subunit gamma/tau [Brachybacterium faecium DSM 4810] gi|256560765|gb|ACU86612.1| DNA polymerase III, subunit gamma/tau [Brachybacterium faecium DSM 4810] Length = 1122 Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G + + L + +GR+ HA LF G +G GK T A + ++ Sbjct: 7 RRYRPESFAEVIGQDHVTTPLRRALRAGRIGHAYLFSGPRGCGKTTSARILARCLNCVEG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + G VD+ R +R Sbjct: 67 P--TDVPCGQC--DSC----RDLANGGSGSLDVVEIDAASHGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S ++V +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 112 ASFAPVRDRYKVFIIDEAHMVTSAGFNALLKLVEEPPEHVKFVFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE++ Sbjct: 172 HHYPFRLIPPQVLGPYLEEV 191 >gi|319898354|ref|YP_004158447.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae 73] gi|319402318|emb|CBI75857.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae 73] Length = 634 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 91/228 (39%), Gaps = 15/228 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G E + L+ + +GR+ A + G +G+GK T A + Sbjct: 19 RKYRPQNFSDLIGQEAMVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNYKTK 78 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P + D Q+ D + + + TG +D+IR I + Sbjct: 79 DIDQPTTLF--DKLGEHCTQIIEGRHMDVIEMDAA--SHTG-------IDDIREIIEQIR 127 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SRC Sbjct: 128 YRPISARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQR 187 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 + L L Q+ +I D + AA GSV A+ I Sbjct: 188 FNLQRIETAVLVNHLRQIAQLEEIEVQDQALFVIARAAEGSVRDALSI 235 >gi|283956558|ref|ZP_06374037.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336] gi|283791807|gb|EFC30597.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336] Length = 510 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 36/285 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPVRMCNPD--PCSPFVKQMAS-HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +A V P PC +A+ H D + + + N +T+I + +Y Sbjct: 59 RALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQTLI-----EQTKY- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 ---TPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + + N+L + L + + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I I + L QK++ +L++D++ F +L E Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFTYLEEL 270 >gi|269955062|ref|YP_003324851.1| DNA polymerase III subunits gamma and tau [Xylanimonas cellulosilytica DSM 15894] gi|269303743|gb|ACZ29293.1| DNA polymerase III, subunits gamma and tau [Xylanimonas cellulosilytica DSM 15894] Length = 926 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 13/200 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q SGR++HA LF G +G GK T A + + + Sbjct: 7 RRYRPETFAEVIGQEHVTGPLMQALRSGRVNHAYLFSGPRGCGKTTSARILARTLNCHAN 66 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ PC P ++A + G VD+ R +R Sbjct: 67 TPQTPLDT----PCGVCPSCVELARGGSGSLDVVEIDAASHGG-------VDDARDLRER 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP + F+ + ++ TIRSR Sbjct: 116 ATFAPARDRYKIFIIDEAHMVSPAGFNALLKIVEEPPPHIKFVFATTEPDKVIGTIRSRT 175 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + L LE L Sbjct: 176 HHYPFRLVPPDVLAPYLESL 195 >gi|153956384|ref|YP_001397149.1| DNA polymerase III subunit delta' [Clostridium kluyveri DSM 555] gi|219856697|ref|YP_002473819.1| hypothetical protein CKR_3354 [Clostridium kluyveri NBRC 12016] gi|146349242|gb|EDK35778.1| DNA polymerase-related protein [Clostridium kluyveri DSM 555] gi|219570421|dbj|BAH08405.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 314 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 28/186 (15%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 R+ GH+ I+ + R+ HA +F GE G+GK+ A +++ Sbjct: 5 RIIGHDMIKSQIENSIKLNRLSHASIFVGEDGLGKSLFAEELA-------------IKIL 51 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 + +V D + L N K+ + + E + + G + Sbjct: 52 GKNEIKRYV---------DIIELKLFKNKKSIGIEEIKYIIEEINKKPY------EGDKK 96 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 VI++ D + A NA+LK++EEPP+ IL+ IL T++SRC K N L+ Sbjct: 97 VIILYNSDKITETAQNAVLKTIEEPPKGSFIILLCEKLDGILDTVKSRCQIYKLNRLNSK 156 Query: 193 NLYKAL 198 ++ K L Sbjct: 157 DMKKFL 162 >gi|325971108|ref|YP_004247299.1| hypothetical protein SpiBuddy_1280 [Spirochaeta sp. Buddy] gi|324026346|gb|ADY13105.1| hypothetical protein SpiBuddy_1280 [Spirochaeta sp. Buddy] Length = 393 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGK-W-----------------RTVITVD 113 NP + F A + L L L PK K W T IT+ Sbjct: 125 ANPTQNTAFDAAAAVNELLISLSQEKDLGPKEAKKWADDLRSALKSLYAASRKNTTITIG 184 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 ++R + +++ T+ R I+++ ++ N +A N+LLK LEEPP+ F LIS I Sbjct: 185 QVRAVDEWVNQTSMGSSKRFIILEAMEQTNVSARNSLLKILEEPPEDTYFFLISEFPNRI 244 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALE 199 +STI SR F L + + + LE Sbjct: 245 MSTILSRVRRYAFPPLGKEAVGRYLE 270 >gi|299820732|ref|ZP_07052621.1| DNA-directed DNA polymerase III subunit delta' [Listeria grayi DSM 20601] gi|299817753|gb|EFI84988.1| DNA-directed DNA polymerase III subunit delta' [Listeria grayi DSM 20601] Length = 330 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 28/209 (13%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K SQ R+ H L EG G GK + + + P P Sbjct: 16 KLFSQSIQENRLSHGYLLEGPSGTGKKEIALWLSQAIF-----------CLQPKP----- 59 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTV------ITVDEIRRIRYFLSLTANTGYWRVIM 135 +++A + + + +P T+ I ++++R+++ LS ++++ Sbjct: 60 EELACGECENCIRIKSGNHPDI---HTIVPDGASIKIEQVRQLKQELSRRGMESNQKIVI 116 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+ D M +AN+LLK +EEP +L + ++ IL TI SR + F +L +L Sbjct: 117 IEQADKMTVQSANSLLKFIEEPDGGMLLLFLTDRPQQILPTIASRLQPVSFKALKHQDL- 175 Query: 196 KALEQLKIMGWDSKRDFVKIAAYGSVARA 224 + Q+ G ++ + + GS +A Sbjct: 176 --VAQMTASGIPQQKARIYASLTGSTEQA 202 >gi|227545155|ref|ZP_03975204.1| DNA polymerase III subunit delta' [Lactobacillus reuteri CF48-3A] gi|300909172|ref|ZP_07126633.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus reuteri SD2112] gi|227184887|gb|EEI64958.1| DNA polymerase III subunit delta' [Lactobacillus reuteri CF48-3A] gi|300893037|gb|EFK86396.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus reuteri SD2112] Length = 337 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 29/196 (14%) Query: 33 MHHALLFEGEQGIGKAT----LGFR-YAGHVLQN-PDFSKAPVRMCNPDPCSPFVKQMAS 86 + HA LF G G GK + L R + H N PD + C D C +++ S Sbjct: 29 LAHAYLFVGPGGSGKMSIAQWLSLRLFCLHPQDNKPDLT------C--DEC----QRILS 76 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 D +Y + P+ + I VDEIR ++ S +A G ++ +I D M A Sbjct: 77 GNHPDIVYAA----PEGRQ----IKVDEIRHLKAEFSKSAVEGNKKIFIIKDADKMTNGA 128 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 AN+LLK +EEP V +++ +L TIRSR I+ L + L L + I Sbjct: 129 ANSLLKFIEEPGTGVYIFMLTTNKSAVLPTIRSRTQVIELPPLKRDALLTVLTEHNI--- 185 Query: 207 DSKRDFVKIAAYGSVA 222 S + + + SVA Sbjct: 186 PSSQQQIAVGITDSVA 201 >gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 625 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 29/258 (11%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKA 67 + + G E + + L+ + +GR+ A + G +G+GK T R L + + K Sbjct: 30 FTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTA-RILARALNYKTSEIDKP 88 Query: 68 PVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 + + P + C ++ H D + + + + TG +D+IR I + Sbjct: 89 TIDLRTPGEHCQAIME--GRHV--DVIEMDAASH--TG-------IDDIREIIEQVRYRP 135 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 136 VSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDL 195 Query: 187 NSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDL 242 +S ++L + G +++ D + + AA GS + +L D+ I+ + Sbjct: 196 RRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLL----DQAIAHGAGV 251 Query: 243 IHIPRQEYALQKMQQIAD 260 + Q A++ M +AD Sbjct: 252 V----QAEAVRSMLGLAD 265 >gi|310815375|ref|YP_003963339.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium vulgare Y25] gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium vulgare Y25] Length = 583 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + +GR+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAAGRIAQAFIMTGIRGTGKTTTARIIAKGLNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D + P +PC +A L +TG V++IR I Sbjct: 69 IGVDGTGGPTT----EPCGKCEHCVAITEGRHVDVLEMDAASRTG-------VNDIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 177 Query: 180 RC 181 RC Sbjct: 178 RC 179 >gi|281423606|ref|ZP_06254519.1| DNA polymerase III, gamma and tau subunit [Prevotella oris F0302] gi|281402426|gb|EFB33257.1| DNA polymerase III, gamma and tau subunit [Prevotella oris F0302] Length = 382 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 36/250 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA----PV 69 + G ++ + L + R+ + ++ G G GK L +A ++L + ++ P Sbjct: 6 VIGQKEAKNRLRELVKEHRIPNTMMLCGPVGSGKLALALAFASYLLGERNDEESLLSDPR 65 Query: 70 RMCN----------PDP--CSPFVKQMASHALH-----DFLYLSYSLNPKT-----GKWR 107 + N PD P +K + A H DF + L K+ W Sbjct: 66 AIANAEAMLAKWEHPDLHFTYPVIKPTGTSADHKMTSDDFSQQWHELLLKSPYFSIDTWL 125 Query: 108 T---------VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 T +I E + LS+ ++ G ++V +I + MN AN LLK LEEPP Sbjct: 126 TAMDAANQQALIGAGESDELTRKLSIKSSQGGYKVSIIWLPERMNVECANKLLKLLEEPP 185 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 + +FI++ +L TI+SR I + + +L +AL + + + ++ +IA Sbjct: 186 YQTVFIMVCEEPELLLDTIKSRTQRIDIKRIDDASLEQALIERRAIDAENAHRIARIAG- 244 Query: 219 GSVARAIKIL 228 G+ RA++ L Sbjct: 245 GNWLRALENL 254 >gi|302544190|ref|ZP_07296532.1| DNA polymerase III, subunits gamma and tau [Streptomyces hygroscopicus ATCC 53653] gi|302461808|gb|EFL24901.1| DNA polymerase III, subunits gamma and tau [Streptomyces himastatinicus ATCC 53653] Length = 851 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 98/244 (40%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 16 RRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 71 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P PC + +A + + G VD+ R +R Sbjct: 72 CEKGPT----PAPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L ++ +I D V A GSV ++ ++ D++++ Sbjct: 181 HHYPFRLVPPGTLREYLGEVCGREEIPVEDGVLPLVVRAGAGSVRDSMSVM----DQLLA 236 Query: 238 SYID 241 D Sbjct: 237 GASD 240 >gi|302535279|ref|ZP_07287621.1| DNA polymerase III subunit delta' [Streptomyces sp. C] gi|302444174|gb|EFL15990.1| DNA polymerase III subunit delta' [Streptomyces sp. C] Length = 403 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V E R + L+ G W+VI+++ D + A N LLK++EEP + +++L + + Sbjct: 110 IGVKETRDLVRRAQLSPAVGRWQVIVLEDADRLTEGAGNVLLKAVEEPAPRTVWLLCAPS 169 Query: 170 SPTILSTIRSRCLSIKFNSLS 190 +L TIRSRC + + S Sbjct: 170 LEDVLPTIRSRCRHLTLTTPS 190 >gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 626 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKA 67 + + G E + + L+ + +GR+ A + G +G+GK T R L + D K Sbjct: 30 FTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTA-RILARALNYKTSDVDKP 88 Query: 68 PVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 + + P + C ++ H D + + + + TG +D+IR I + Sbjct: 89 TIDLRTPGEHCQAIME--GRHV--DVIEMDAASH--TG-------IDDIREIIEQVRYRP 135 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 136 VSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDL 195 Query: 187 NSLSENNL 194 +S ++L Sbjct: 196 RRISASDL 203 >gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] Length = 623 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 39/259 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPDFS-K 66 + G E + + L+ + +GR+ A + G +G+GK T Y + P + Sbjct: 34 MVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTADVDKPTIDLR 93 Query: 67 APVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 AP C Q H D + + + + TG +D+IR I + Sbjct: 94 APGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDIREIIEQVRYR 134 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 135 PVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFD 194 Query: 186 FNSLSENNLYKALEQLKIM-GWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYID 241 +S ++L + G +++ D + + AA GS + +L D+ I+ Sbjct: 195 LRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLL----DQAIAHGAG 250 Query: 242 LIHIPRQEYALQKMQQIAD 260 ++ Q A++ M +AD Sbjct: 251 VV----QAEAVRGMLGLAD 265 >gi|94968218|ref|YP_590266.1| DNA polymerase III, delta prime subunit [Candidatus Koribacter versatilis Ellin345] gi|94550268|gb|ABF40192.1| DNA polymerase III, delta prime subunit [Candidatus Koribacter versatilis Ellin345] Length = 366 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 ++ VD++R + + G +V + P + AAN+LLK LEEPP+ L+S Sbjct: 124 LVKVDQVRHVIGHIYYKPTQGEHKVYIF-PTANFMKEAANSLLKILEEPPEFATIFLLSE 182 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 ++L+TIRSRC+ ++ +++ ++ LE+ + +R V G + +A Sbjct: 183 NPSSLLATIRSRCVQLRLEAIAPEDVESYLEKERPEWAARQRALVARLCGGGIGQA 238 >gi|188589354|ref|YP_001922591.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E3 str. Alaska E43] gi|188499635|gb|ACD52771.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E3 str. Alaska E43] Length = 546 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 8 REWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ K++ D L + N G R +D+ + Sbjct: 63 ---NCFNLQDGEPCNECEMCKKINEGLSMDVTELDAASN--NGIDRIRDIIDDTK----- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 113 --YPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +++ + L K E + D D + A G++ ++ IL Sbjct: 171 QRFDFKRINQKEIADRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSIL 221 >gi|306834998|ref|ZP_07468047.1| possible DNA polymerase III subunits gamma and tau [Corynebacterium accolens ATCC 49726] gi|304569118|gb|EFM44634.1| possible DNA polymerase III subunits gamma and tau [Corynebacterium accolens ATCC 49726] Length = 895 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 13/167 (7%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 G E + LS +GR++HA LF G +G GK + A + + P C Sbjct: 1 MGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHGPTSTPCGKC-- 58 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 D C +A + G V+++R +R +R+ Sbjct: 59 DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAYYAPAESRYRIF 107 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR Sbjct: 108 IIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRT 154 >gi|315501245|ref|YP_004080132.1| DNA polymerase iii, delta prime subunit [Micromonospora sp. L5] gi|315407864|gb|ADU05981.1| DNA polymerase III, delta prime subunit [Micromonospora sp. L5] Length = 423 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V E+R + + + G W++++I+ D + A NALLK++EEPP + +F+L + + Sbjct: 126 IGVGEMRALVLRAASAPSGGRWQIVIIEDADRLTEAAGNALLKAIEEPPPRTVFLLCAPS 185 Query: 170 S-PTILS-TIRSRCLSIKF 186 + P +S TIRSRC + Sbjct: 186 THPDDISVTIRSRCRVVPL 204 >gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC 7002] gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC 7002] Length = 742 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 24/186 (12%) Query: 5 AFDPVYNQ-------RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH 57 A++P++++ +L G E I LS R+ A LF G +G GK T R Sbjct: 2 AYEPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGK-TSSARILAK 60 Query: 58 VLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 L + ++ P PC + +A+ + D + + + N TG VD I Sbjct: 61 SLNCLNAAQP-----TPHPCGECEVCRAIANGSALDVIEIDAASN--TG-------VDNI 106 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + ++V +ID ++ A NALLK+LEEPP V+F+L + +L Sbjct: 107 RELIERSQFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLP 166 Query: 176 TIRSRC 181 TI SRC Sbjct: 167 TIISRC 172 >gi|225181530|ref|ZP_03734972.1| DNA polymerase III, gamma/tau subunits [Dethiobacter alkaliphilus AHT 1] gi|225167778|gb|EEG76587.1| DNA polymerase III, gamma/tau subunits [Dethiobacter alkaliphilus AHT 1] Length = 294 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 21/193 (10%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G E I + L + R+ HA LF G L +A +L +K P +C Sbjct: 8 GSEKITRVLQAAVQADRIAHAYLFCGADEAAIKKLAAVFAASLLCE---TKEPCGICA-- 62 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 K+ A+ + D ++ +P+ GK + V ++R Y L A ++V + Sbjct: 63 ----HCKKAANRSHPDLHWV----DPE-GKSLKIEQVRSLKRKAYLLPHEAR---YQVFI 110 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL- 194 + + AN+LLK LEEPP +FIL++ +L T+ SRC E ++ Sbjct: 111 LTDAGQLTTEGANSLLKVLEEPPPASVFILLAKNPAMLLPTVVSRCQVFSLQGGGEQSIP 170 Query: 195 ---YKALEQLKIM 204 ++A+E L+++ Sbjct: 171 ALNHQAVELLEVL 183 >gi|170017866|ref|YP_001728785.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20] gi|169804723|gb|ACA83341.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20] Length = 604 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 36/246 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E I + L + + HA LF G +G GK + +A V Sbjct: 8 RVYRPRTFEDMIGQEVITQTLKNAIETHQTGHAYLFSGPRGTGKTSAAKIFAREV----- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + + D + + N + V+++R I + Sbjct: 63 --------------NGIAPETDDSQISDIVEFDAASNSR---------VEDMRDILSNVD 99 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ +A NALLK+LEEPP V FIL + + TI SR Sbjct: 100 YAPIEAEFKVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQR 159 Query: 184 IKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSY 239 +F + + L + LK D +D ++I A G + A+ IL D++I+ Sbjct: 160 FEFKRIDGQAIAAHLADVLKQQHIDFDQDALRIIANVAEGGMRDALSIL----DQVIAFG 215 Query: 240 IDLIHI 245 D + + Sbjct: 216 TDTVTV 221 >gi|157961747|ref|YP_001501781.1| DNA polymerase III subunit delta' [Shewanella pealeana ATCC 700345] gi|157846747|gb|ABV87246.1| DNA polymerase III, delta prime subunit [Shewanella pealeana ATCC 700345] Length = 305 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 ++KF S+ + R+ HA L + G G +L A L + C C Sbjct: 11 LDKF-SEQLKTARVGHAYLVGMDAGYGGESLVLELAKMSLCHQLGQGGACGFCKA--C-- 65 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 Q+ H LYL + + I VD+IR + L+ T+ G RV +I Sbjct: 66 ---QLIEANNHPDLYLVEAEGAQ-------IKVDQIRELCQKLTTTSQQGGRRVAVILNS 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N+ + NALLK+LEEP + + +L ++A +++TI SRC Sbjct: 116 ERLNQASGNALLKTLEEPGKDTILLLQTNAPSRLIATISSRC 157 >gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] Length = 603 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 15 VLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFIMTGIRGTGKTTTARIIAKGMNC 74 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC A + +TG V +IR I Sbjct: 75 IGPDGTGQPTT----EPCGTCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 123 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 124 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 183 Query: 180 RC 181 RC Sbjct: 184 RC 185 >gi|58584691|ref|YP_198264.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419007|gb|AAW71022.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 494 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 25/181 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NP 62 + P + L G + + + L + R+ ++L G G+GK T R L P Sbjct: 7 YRPGSFKDLVGQDILVRILENAFTLNRIPQSILLSGASGVGKTTTA-RIIALCLNCSLGP 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRY 120 F +PC + + L + S +P + +VD+I+ I Sbjct: 66 TF----------EPCG---------SCKNCLTIKNSSHPDVIEIDAASHTSVDDIKVILG 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +R Sbjct: 107 DICYSPISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPPSVKFILATTEIKKIPITIIAR 166 Query: 181 C 181 C Sbjct: 167 C 167 >gi|157690813|ref|YP_001485275.1| DNA polymerase III subunit delta' [Bacillus pumilus SAFR-032] gi|157679571|gb|ABV60715.1| DNA-directed DNA polymerase III delta prime subunit [Bacillus pumilus SAFR-032] Length = 329 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 17/170 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH 90 R+ HA LFEG++G GK + A +L F ++ V+ C + C K++ S H Sbjct: 27 RLAHAYLFEGKKGTGK-----QDAAMLLAKSFFCLESGVKPC--ESCQN-CKRIES-GNH 77 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 L+L + P + +++ ++ + + ++ +I D M NAAN+L Sbjct: 78 PDLHL---MQPDGQSIKKA----QVQALQEEFTKAGVESHRKMYIILHADKMTVNAANSL 130 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 LK LEEP ++ + ILI+ S +L TI SRC + F L +L + L Q Sbjct: 131 LKFLEEPNRETMAILITEQSHKMLDTIISRCQMLSFQPLQPQSLEQQLLQ 180 >gi|156044344|ref|XP_001588728.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980] gi|154694664|gb|EDN94402.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980 UF-70] Length = 354 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ DG++R+A AL +++E+ V IL+++++ I+ IRSR L ++ + + Sbjct: 130 FKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRTLLVRVGAPT 189 Query: 191 ENNLYKALEQL-KIMGWDSKRDFVKIAAYGS 220 E ++ K LE+ K GW R F++ A S Sbjct: 190 EGDIVKVLEKSGKREGWGVSRGFLERVAKES 220 >gi|86151077|ref|ZP_01069293.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 260.94] gi|315124629|ref|YP_004066633.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842247|gb|EAQ59493.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 260.94] gi|315018351|gb|ADT66444.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 509 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 36/285 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPVRMCNPD--PCSPFVKQMAS-HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +A V P PC +A+ H D + + + N +T+I + +Y Sbjct: 59 RALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQTLI-----EQTKY- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 ---TPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + + N+L + L + + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I I + L QK++ +L++D++ F +L E Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] Length = 582 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC +A H D + + + N G R +I R Sbjct: 69 IGPDGNGGPTT----EPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYR- 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 124 --------AASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 175 Query: 178 RSRC 181 SRC Sbjct: 176 LSRC 179 >gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC 23445] gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC 23445] Length = 602 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 37/239 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNP--DPCSPFVKQM--ASHALHDFLYLSYSLNPKTGKWRTVITV 112 + P P C + C V +M ASH TG + Sbjct: 75 TVDQPTIDLSTPGEHCQAIMEGCHVDVIEMDAASH---------------TG-------I 112 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D+IR I + + ++V +ID V ++ A N LLK+LEEPP V FI + Sbjct: 113 DDIREIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRK 172 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 + T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 173 VPITVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. BTAi1] gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. BTAi1] Length = 613 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 27/231 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 23 VLARKYRPSSFADLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 81 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVK---QMASHALH-DFLYLSYSLNPKTGKWRTVITVDE 114 + PD S + P P + Q + H D L + + + TG VD+ Sbjct: 82 YELPDGS-----VKGPTIHMPVLGTHCQAIMESRHMDILEMDAASH--TG-------VDD 127 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + Sbjct: 128 VRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVP 187 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-VKIAAYGSVARA 224 T+ SRC + + L K L G +K ++ A G +ARA Sbjct: 188 VTVLSRCQRFDLRRVEADVLMKHL-----AGIATKEGVTIEPEALGIIARA 233 >gi|259506070|ref|ZP_05748972.1| DNA polymerase III, delta' subunit [Corynebacterium efficiens YS-314] gi|259166358|gb|EEW50912.1| DNA polymerase III, delta' subunit [Corynebacterium efficiens YS-314] Length = 417 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D +R + + WRVI+++ D + A NALLK++EEPP++ + IL + + Sbjct: 116 IGIDLMRTVVDDAARLPTVSNWRVIILENADRLTEPAGNALLKTVEEPPERTIIILCAPS 175 Query: 170 S--PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + I+ T+RSRC + + + + + L + D R ++ G + RA + Sbjct: 176 TDPEDIMVTLRSRCRHVYIPTPTIEQVTRILVSEGGVAEDDAR-LAAASSGGHIGRARHL 234 Query: 228 LH 229 +H Sbjct: 235 VH 236 >gi|81298905|ref|YP_399113.1| DNA polymerase III subunit delta' [Synechococcus elongatus PCC 7942] gi|81167786|gb|ABB56126.1| DNA polymerase III, delta prime subunit [Synechococcus elongatus PCC 7942] Length = 311 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ A LF G G G+ +A +L D S R +PD + +++ Sbjct: 25 RLAPAYLFAGPDGTGRGLAARCWAPLLLA--DQSGRVARGNHPD----LLWVEPTYSQQG 78 Query: 92 FLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 L + + + RT + +++IR+I FL+ +++I+ + M AAN Sbjct: 79 TLIPASQAQAQGIQRRTPPQVRLEQIRQITQFLARPPLAAPRSLVVIEQAETMAEAAANG 138 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LLK+LEEP Q + IL++ + +L T+ SRC I F LSE + + L+ Sbjct: 139 LLKTLEEPGQATI-ILMAPSPELLLPTLVSRCQRIPFYRLSEQAMAQILQ 187 >gi|254431411|ref|ZP_05045114.1| DNA polymerase III subunit delta [Cyanobium sp. PCC 7001] gi|197625864|gb|EDY38423.1| DNA polymerase III subunit delta [Cyanobium sp. PCC 7001] Length = 320 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 27/218 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E L S R+ A L G G+G+ R+ V+ P+ S Sbjct: 11 VLGQERAVALLEASLRSRRLAPAYLLSGPDGVGRRLAALRFLEGVIAGPEGS-------- 62 Query: 74 PDPCSPFVKQMASHALHDFLYLSYS------LNPKTGKWRTVIT--------VDEIRRIR 119 P +++ + D L++ + L P + ++ +++IR + Sbjct: 63 ----VPLRRRLEAGNHPDLLWVEPTHLDKGQLVPASQALERGVSRRSPPQLRLEQIRELT 118 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 FL+ ++++D + M AANALLK+LEEP + + +LI A +LSTIRS Sbjct: 119 RFLARRPVEAAGCLVVLDGAEAMAEAAANALLKTLEEP-GRGMVLLICSAPEQLLSTIRS 177 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 RC I+F L +++ + L + +++AA Sbjct: 178 RCQQIRFGRLDSDSMARVLAAAPAPSCPDPPELLELAA 215 >gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] Length = 608 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 16/233 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 15 VLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFVMTGIRGTGKTTTARIIAKGMNC 74 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P +PC A + +TG V +IR I Sbjct: 75 IGPDGTGQPTT----EPCGVCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 123 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 124 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 183 Query: 180 RCLSIKFNSLSENNLYKALEQLKIM-GWDSKRD---FVKIAAYGSVARAIKIL 228 RC + + + ++ G + D + AA GSV A +L Sbjct: 184 RCQRYDLRRIEPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLL 236 >gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] Length = 631 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 31/231 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 + + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 33 FTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTTEIDRPT 92 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P C Q H D + + + + TG +D+IR I Sbjct: 93 IDLKIPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDIREIIEQ 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 134 VRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 193 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +S +L L + I D + AA GS + +L Sbjct: 194 QRFDLRRISAGDLVGLFSTILSKENIEAEDEALAMIARAAEGSARDGLSLL 244 >gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] Length = 582 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC +A H D + + + N G R +I R Sbjct: 69 IGPDGNGGPTT----EPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYR- 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 124 --------AASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 175 Query: 178 RSRC 181 SRC Sbjct: 176 LSRC 179 >gi|261338415|ref|ZP_05966299.1| putative DNA polymerase III, delta' subunit [Bifidobacterium gallicum DSM 20093] gi|270276386|gb|EFA22240.1| putative DNA polymerase III, delta' subunit [Bifidobacterium gallicum DSM 20093] Length = 383 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 16/168 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD D + +Q+ + D Sbjct: 28 LAQSWLICGPPGSGRSHMAKAFAA-ALESPDHGLG-------DEPTKTTQQVLNGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 +S + I ++++R + +T WR+I+I+ VD M N LLK Sbjct: 80 RIVSTD--------KVTIGIEQVRELAAACEQMPSTAPWRIIIIEDVDRMLERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +EEP + +++L + ++ +L TIRSR + S ++ + LE+ Sbjct: 132 QIEEPSPRTIWLLCAPSAQDVLPTIRSRTRILNLGVPSNEDVQQFLER 179 >gi|56751419|ref|YP_172120.1| DNA polymerase III subunit delta' [Synechococcus elongatus PCC 6301] gi|56686378|dbj|BAD79600.1| DNA polymerase III delta prime subunit [Synechococcus elongatus PCC 6301] Length = 312 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ A LF G G G+ +A +L D S R +PD + +++ Sbjct: 26 RLAPAYLFAGPDGTGRGLAARCWAPLLLA--DQSGRVARGNHPD----LLWVEPTYSQQG 79 Query: 92 FLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 L + + + RT + +++IR+I FL+ +++I+ + M AAN Sbjct: 80 TLIPASQAQAQGIQRRTPPQVRLEQIRQITQFLARPPLAAPRSLVVIEQAETMAEAAANG 139 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 LLK+LEEP Q + IL++ + +L T+ SRC I F LSE + + L+ Sbjct: 140 LLKTLEEPGQATI-ILMAPSPELLLPTLVSRCQRIPFYRLSEQAMAQILQ 188 >gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. ORS278] gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. ORS278] Length = 615 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 27/231 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + +S + +GR+ A + G +G+GK T R L Sbjct: 23 VLARKYRPSSFADLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 81 Query: 60 -QNPDFSKAPVRMCNPDPCSPFVK---QMASHALH-DFLYLSYSLNPKTGKWRTVITVDE 114 + PD S + P P + Q + H D L + + + TG VD+ Sbjct: 82 YELPDGS-----VKGPTIHMPVLGTHCQAIMESRHMDILEMDAASH--TG-------VDD 127 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+I + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + Sbjct: 128 VRQINDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVP 187 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-VKIAAYGSVARA 224 T+ SRC + + L K L G +K ++ A G +ARA Sbjct: 188 VTVLSRCQRFDLRRVEADVLMKHL-----AGIATKEGVTIEPEALGIIARA 233 >gi|332042232|gb|EGI78558.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624] Length = 364 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 28/121 (23%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL------- 162 I VD +R F T+ G +V++I P + MN ANALLK+LEEPP +V+ Sbjct: 110 IRVDAMRDAIEFAQRTSARGRGKVMLIYPAERMNAITANALLKTLEEPPGEVVPDMATND 169 Query: 163 ------------------FILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 F+L + A+ +L TIRSRC+S ++L+ +AL L+ Sbjct: 170 GPSLFSDVAAPPAVPSTRFVLATEAAHQLLPTIRSRCMS---HALAWPTSDEALAWLRTQ 226 Query: 205 G 205 G Sbjct: 227 G 227 >gi|283954716|ref|ZP_06372233.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414] gi|283793769|gb|EFC32521.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414] Length = 511 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P +C C ++ H D + + + N +T+I + +Y T Sbjct: 69 DTPCGICKH--CLAALE--GKHI--DIIEMDAASNRGLEDIQTLI-----EQTKY----T 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR + Sbjct: 114 PSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFR 173 Query: 186 FNSLSENNLYKALEQL 201 F + ++ + L+++ Sbjct: 174 FKQIPQSEILNHLKEI 189 >gi|269955163|ref|YP_003324952.1| DNA polymerase III subunit delta' [Xylanimonas cellulosilytica DSM 15894] gi|269303844|gb|ACZ29394.1| DNA polymerase III, delta prime subunit [Xylanimonas cellulosilytica DSM 15894] Length = 381 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 46/78 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I ++E+R + + T + G +RVI+++ D M N LLK++EEPP +++L + + Sbjct: 86 IRIEEVRGLIGTAARTPSLGRFRVIVVEDADRMIERTTNVLLKAIEEPPPHTVWVLCAPS 145 Query: 170 SPTILSTIRSRCLSIKFN 187 +L TIRSRC ++ Sbjct: 146 VQDVLPTIRSRCRAVPLR 163 >gi|86150298|ref|ZP_01068524.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839123|gb|EAQ56386.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni CF93-6] Length = 509 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 141/356 (39%), Gaps = 62/356 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 + I + I I + L QK++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEEL----------- 270 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSM-YNLDRRQMIFHLLSKARE--CNDLYF 341 E + I ++ F L + A S +++ + F +LSKA+ CND F Sbjct: 271 ----QDYEASSVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCNDDGF 322 >gi|315638770|ref|ZP_07893943.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter upsaliensis JV21] gi|315481179|gb|EFU71810.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter upsaliensis JV21] Length = 505 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 35/206 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L S R+ HA LF G +G GK + + + FS Sbjct: 9 YRPKTFDELIGQKAVSASLRYALNSKRLAHAYLFSGLRGSGKTS-----SARI-----FS 58 Query: 66 KAPV--RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYF 121 +A V N PC + +A AL GK +I +D R + Sbjct: 59 RALVCDEGPNATPCGTCKQCIA--ALE-------------GKHIDIIEMDAASNRGLEDI 103 Query: 122 LSLTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 +L T Y +++ +ID V + AANALLK+LEEPP V FIL + + + Sbjct: 104 QNLIEQTKYAPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPA 163 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SR +F ++++ + L+ + Sbjct: 164 TVLSRTQHFRFKQIAQSEILTHLKDI 189 >gi|47092849|ref|ZP_00230632.1| DNA polymerase III, delta subunit [Listeria monocytogenes str. 4b H7858] gi|47018753|gb|EAL09503.1| DNA polymerase III, delta subunit [Listeria monocytogenes str. 4b H7858] Length = 321 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 7 KIFSKSVRENRLSHGYLFEGARGTGKKRTALWLAQSLFCLESTETELACGKCAN---CT- 62 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 63 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 111 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 112 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 168 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 169 SLTAAGISEQKARIYASITGSVEEA 193 >gi|227502437|ref|ZP_03932486.1| possible DNA polymerase III, gamma subunit and tau subunit [Corynebacterium accolens ATCC 49725] gi|227076806|gb|EEI14769.1| possible DNA polymerase III, gamma subunit and tau subunit [Corynebacterium accolens ATCC 49725] Length = 904 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 13/167 (7%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 G E + LS +GR++HA LF G +G GK + A + + P C Sbjct: 1 MGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHGPTSTPCGKC-- 58 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 D C +A + G V+++R +R +R+ Sbjct: 59 DSCV----SLAPGGPGNLDVTELDAASHNG-------VEDMRELRDRAYYAPAESRYRIF 107 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID ++ + ANALLK +EEPP+ V+FI + I+ TIRSR Sbjct: 108 IIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRT 154 >gi|21672618|ref|NP_660685.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008562|sp|Q8K9J2|HOLB_BUCAP RecName: Full=DNA polymerase III subunit delta' gi|21623250|gb|AAM67896.1| DNA polymerase III delta' subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 328 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 + HHA+L + ++G+G L + + +L C D C K M+++ D Sbjct: 22 KAHHAILIKTQKGMGVFKLVWFISKWLLC---LKPKGTNFC--DNCHG-CKLMSANNHPD 75 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + + +N K V VD IR I + A G ++I + V + +A NALL Sbjct: 76 WHTI---INEKND----VFDVDSIRVINEKIFKRAQQGNNKIIFLPNVHKLTESAVNALL 128 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRC 181 K LEEPP+K F LI + + ST++SRC Sbjct: 129 KILEEPPEKNWFFLIDYNYLKLHSTLKSRC 158 >gi|25026867|ref|NP_736921.1| DNA polymerase III subunit delta' [Corynebacterium efficiens YS-314] gi|23492147|dbj|BAC17121.1| DNA polymerase III delta' subunit [Corynebacterium efficiens YS-314] Length = 414 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D +R + + WRVI+++ D + A NALLK++EEPP++ + IL + + Sbjct: 113 IGIDLMRTVVDDAARLPTVSNWRVIILENADRLTEPAGNALLKTVEEPPERTIIILCAPS 172 Query: 170 S--PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + I+ T+RSRC + + + + + L + D R ++ G + RA + Sbjct: 173 TDPEDIMVTLRSRCRHVYIPTPTIEQVTRILVSEGGVAEDDAR-LAAASSGGHIGRARHL 231 Query: 228 LH 229 +H Sbjct: 232 VH 233 >gi|294787157|ref|ZP_06752410.1| DNA polymerase III, subunits gamma and tau [Parascardovia denticolens F0305] gi|315227307|ref|ZP_07869094.1| DNA polymerase III, gamma/tau subunit DnaX [Parascardovia denticolens DSM 10105] gi|294484513|gb|EFG32148.1| DNA polymerase III, subunits gamma and tau [Parascardovia denticolens F0305] gi|315119757|gb|EFT82890.1| DNA polymerase III, gamma/tau subunit DnaX [Parascardovia denticolens DSM 10105] Length = 900 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G E + L + G++ HA LF G +G GK + A V ++ Sbjct: 7 RRYRPDTFDGVVGQEQVTIPLKRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCVKG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A++ + G V++ R +R Sbjct: 67 P--TSHPCGEC--DSC----RDLATNGPGSIDVIEVDAASHNG-------VEDARELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKI------------MGWDSKRDFVKI-------AAY 218 F + + LE Q KI G S RD + + + Sbjct: 172 HHYPFRLVPPEVMGPYLEGICKQEKIQPQPGVLKLAMRTGGGSVRDTLSVLDQLMVGSVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYIDLI 243 G+++ A+ +L Y D +IS +D + Sbjct: 232 GTISYDSAVTLLGYTPDALISEAVDAV 258 >gi|297624043|ref|YP_003705477.1| DNA polymerase III subunit [Truepera radiovictrix DSM 17093] gi|297165223|gb|ADI14934.1| DNA polymerase III subunit, putative [Truepera radiovictrix DSM 17093] Length = 313 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 23/194 (11%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + +FGHE+ ++ L H LLF G +G+ + YA + Sbjct: 5 PEHPLAVFGHEEAKRVLRTLRA-----HTLLFTGPPRVGRRRVARWYAALLNCRAPQRGE 59 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKW--RTVITVDEIRRIRYFLSLT 125 P C + C F A D+ ++ K G+ R I + ++ Sbjct: 60 PCGAC--ESCRLFAATPEGPAHPDYREVAPERETKAGRRSRRPQIRIGDL----VARDDA 113 Query: 126 ANT-GYW---------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 N G W RV +ID + ++ AANA LK LEEPP + ILI+ + ++L Sbjct: 114 PNPLGPWLEARPRFRTRVGVIDGAESLSEGAANAFLKFLEEPPSYAVVILIAPSVQSVLP 173 Query: 176 TIRSRCLSIKFNSL 189 T+ SR ++F ++ Sbjct: 174 TLVSRSAPVRFGAV 187 >gi|284803098|ref|YP_003414963.1| DNA polymerase III subunit delta' [Listeria monocytogenes 08-5578] gi|284996239|ref|YP_003418007.1| DNA polymerase III subunit delta' [Listeria monocytogenes 08-5923] gi|284058660|gb|ADB69601.1| DNA polymerase III subunit delta' [Listeria monocytogenes 08-5578] gi|284061706|gb|ADB72645.1| DNA polymerase III subunit delta' [Listeria monocytogenes 08-5923] Length = 322 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 8 KIFSKSVRENRLSHGYLFEGTRGTGKKRTALWLAQSLFCLESTETELACGKCTN---CT- 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 64 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 112 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 113 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 169 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 170 SLTAAGISEQKARIYASITGSVEEA 194 >gi|224437201|ref|ZP_03658182.1| DNA polymerase III subunits gamma and tau [Helicobacter cinaedi CCUG 18818] Length = 562 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 15/184 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G I + LS S + HA LF G +G GK + +A + + Sbjct: 10 YRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFARAL----ECE 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P+ PC +A AL + ++ + + +D+I+++ Sbjct: 66 SGPIST----PCGSCASCVA--ALENRHIDIIEMDAASSRG-----IDDIKKLIEQTKYR 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++ +ID V +++ A NALLK+LEEPP+ V FIL + + +TI SR + Sbjct: 115 PSFGRYKIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFR 174 Query: 186 FNSL 189 F + Sbjct: 175 FKQI 178 >gi|306821415|ref|ZP_07455020.1| DNA-directed DNA polymerase III subunit delta' [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550537|gb|EFM38523.1| DNA-directed DNA polymerase III subunit delta' [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 268 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 33/170 (19%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E I++ L + Y + ++ +FE + L + H+LQ + P Sbjct: 5 ERIKEILLEEYDENHLKNSYIFESKDQTTALKLAREISEHILQTDNLENTP--------- 55 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 DF+ S+ + T+ + + R++ F S ++ + + Sbjct: 56 -------------DFM----SIKKEDMSIDTIRNIIKNCRVKPFKS-------KKIYVFE 91 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 N + NA LK+LEEPP V+FILI++ + L TIRSRC++ F+ Sbjct: 92 DSSKFNISMQNAFLKTLEEPPSDVIFILITYNALNFLDTIRSRCITYFFD 141 >gi|294340172|emb|CAZ88544.1| putative DNA-directed DNA polymerase [Thiomonas sp. 3As] Length = 334 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 3/92 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +++IRR+ + T++ G +V +I PVD +N AANALLK+LEEPP+ V F+L +H Sbjct: 104 IRIEQIRRLNDWSVSTSHRGRAKVALIYPVDALNAAAANALLKTLEEPPEDVQFLLGAHR 163 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSRC + +L +A +QL Sbjct: 164 LDALLPTIRSRC---RLAALPRPGAAEAQQQL 192 >gi|239825611|ref|YP_002948235.1| DNA polymerase III subunit delta' [Geobacillus sp. WCH70] gi|239805904|gb|ACS22969.1| DNA polymerase III, delta prime subunit [Geobacillus sp. WCH70] Length = 337 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L++ GR+ HA LFEG++G GK + A + ++ ++ CN C Sbjct: 19 KMLTKSLEKGRISHAYLFEGQRGTGKKAMSLLLAKSLF---CLHRSGIKPCNE--CRN-C 72 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +++ S D + + P I ++I ++ + A ++ +I+ D Sbjct: 73 RRIDSGNHPDV----HVIEPDGQS----IKKEQIEMLQQEFAKMAVESDRKLYIIEHADK 124 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 M NAAN+LLK LEEP + IL++ +L TI SRC F + Sbjct: 125 MTTNAANSLLKFLEEPRPGTVAILLTEQYHRLLETIISRCQVFSFKPI 172 >gi|218442574|ref|YP_002380895.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424] gi|218175345|gb|ACK74076.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7424] Length = 452 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 17/190 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G I L+ ++ A LF G +G GK + G A + +++ + P Sbjct: 18 LIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAKSLNCVKDNKPTVTPCGE 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 CN K +A+ + D + L + N R +++ + I + Sbjct: 78 CNS------CKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGR---------RY 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID ++ A LLK+LEEPP V+FIL + + TI SRC F + Sbjct: 123 KIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRFNN 182 Query: 192 NNLYKALEQL 201 + + LE + Sbjct: 183 DVIVNQLEAI 192 >gi|167624299|ref|YP_001674593.1| DNA polymerase III subunit delta' [Shewanella halifaxensis HAW-EB4] gi|167354321|gb|ABZ76934.1| DNA polymerase III, delta prime subunit [Shewanella halifaxensis HAW-EB4] Length = 304 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 15/162 (9%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 IE F S+ +GR+ HA L + G L A L C P C Sbjct: 11 IETF-SEQLKTGRVGHAYLIAMDVAYGGEALTLELAKAALCKQVGVTGSCGFCKP--C-- 65 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 Q+ H LY + + I VD+IR + L+ T G RV +I Sbjct: 66 ---QLVEANNHPDLYRVEADGAQ-------IKVDQIRALCQKLTTTPQQGGRRVAVILNS 115 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +N+ +ANALLK+LEEP + + L +++ +L TI SRC Sbjct: 116 ERLNQASANALLKTLEEPGKDTILFLQANSPTRLLPTISSRC 157 >gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84] gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84] Length = 625 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 17/184 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRM 71 + G E + + L+ + +GR+ A + G +G+GK T R L + P+ + + + Sbjct: 34 MVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTA-RILARALNYRTPEIDRPTIDL 92 Query: 72 CNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 P + C ++ H D + + + + TG +D+IR I + + Sbjct: 93 REPGEHCQAIME--GRHV--DVIEMDAASH--TG-------IDDIREIIEQVRYRPVSAR 139 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC +S Sbjct: 140 YKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRIS 199 Query: 191 ENNL 194 ++L Sbjct: 200 ASDL 203 >gi|16802210|ref|NP_463695.1| DNA polymerase III subunit delta' [Listeria monocytogenes EGD-e] gi|224500798|ref|ZP_03669147.1| DNA polymerase III subunit delta' [Listeria monocytogenes Finland 1988] gi|224503754|ref|ZP_03672061.1| DNA polymerase III subunit delta' [Listeria monocytogenes FSL R2-561] gi|254832318|ref|ZP_05236973.1| DNA polymerase III subunit delta' [Listeria monocytogenes 10403S] gi|255028496|ref|ZP_05300447.1| DNA polymerase III subunit delta' [Listeria monocytogenes LO28] gi|16409521|emb|CAC98377.1| lmo0162 [Listeria monocytogenes EGD-e] Length = 330 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLFEGTRGTGKKRTALWLAQSLFCLESTETELACGKCTN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 178 SLTAAGISEQKARIYASITGSVEEA 202 >gi|229116002|ref|ZP_04245397.1| DNA polymerase III subunit delta' [Bacillus cereus Rock1-3] gi|228667496|gb|EEL22943.1| DNA polymerase III subunit delta' [Bacillus cereus Rock1-3] Length = 336 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 13/177 (7%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +N+ + + L + ++ HA LF GE G K + + + + P Sbjct: 7 WNEVMQKQHIVGTILKNGLVNKKVSHAYLFNGEAGTLKKGTALVFIKSLFCLENSERTP- 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 CN D + H D + +S P+ G I ++I+++ +S TA Sbjct: 66 --CN-DCRNCNRINNNIHP--DVVIIS----PEEG---GSIKKEQIQQLHKEISYTATEF 113 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ +ID V+ + AAN+LLK LEEP IL++ +L TI+SRC + F Sbjct: 114 SRKIYLIDRVEMLTTGAANSLLKFLEEPDGNTTAILVTENIKKVLGTIQSRCQILNF 170 >gi|226222795|ref|YP_002756902.1| DNA polymerase III (delta' subunit) [Listeria monocytogenes Clip81459] gi|254825921|ref|ZP_05230922.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J1-194] gi|254853716|ref|ZP_05243064.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL R2-503] gi|254933005|ref|ZP_05266364.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262] gi|300764909|ref|ZP_07074898.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL N1-017] gi|225875257|emb|CAS03954.1| Putative DNA polymerase III (delta' subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607096|gb|EEW19704.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL R2-503] gi|293584563|gb|EFF96595.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262] gi|293595160|gb|EFG02921.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J1-194] gi|300514396|gb|EFK41454.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL N1-017] gi|328468490|gb|EGF39496.1| DNA polymerase III subunit delta' [Listeria monocytogenes 1816] Length = 330 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLFEGARGTGKKRTALWLAQSLFCLESTETELACGKCAN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 178 SLTAAGISEQKARIYASITGSVEEA 202 >gi|293391496|ref|ZP_06635830.1| DNA polymerase III subunit delta' [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952030|gb|EFE02149.1| DNA polymerase III subunit delta' [Aggregatibacter actinomycetemcomitans D7S-1] Length = 327 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 ++Q + G H+ALL ++G+G L A ++ P C+ + + Q Sbjct: 15 ITQAFEEGLGHNALLIRADEGLGAEQLCRLLAQRLMCLTPKGAEPCGECH----ACHLMQ 70 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 SH DF +++ N G VD+IR + S A +VI I+ + Sbjct: 71 ANSHP--DFQHIAPIENKDIG-------VDQIRAMNEQASQHAQQNGNKVIYIEQAHRLT 121 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANA+LK+LEEP FIL + +L TI SRC Sbjct: 122 EAAANAILKTLEEPRPNTYFILQNDMQKALLPTIYSRC 159 >gi|288936137|ref|YP_003440196.1| DNA polymerase III subunit delta' [Klebsiella variicola At-22] gi|288890846|gb|ADC59164.1| DNA polymerase III, delta prime subunit [Klebsiella variicola At-22] Length = 334 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ R C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLSGMGGEALIYALCRFLMCRQPEGHKSCGR-CH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y L P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YPLIPEKGK--SALGIDAVRDVNEKLYERARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACQEPARLLTTLRSRC 159 >gi|307591376|ref|YP_003900175.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822] gi|306986230|gb|ADN18109.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7822] Length = 477 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 18/187 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G + I L+ +GR+ A LF G +G GK + A + L + + P Sbjct: 18 LVGQQPIATTLTNAITTGRIAPAYLFSGPRGTGKTSTARILAKSLNCLSEDNPTVTPCGQ 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C +AS D + + + N + R D I + ++ + Sbjct: 78 C--DSCG----AIASSNSLDVIEIDAASNNSVEQIR-----DLIEKSQFV-----PHNLY 121 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D ++ A ALLK+LE PP++V+FIL + + TI SRC F S+ Sbjct: 122 KVWILDECHALSHFAIQALLKTLENPPERVVFILCTTEPERLGDTIISRCQRFNFRRESD 181 Query: 192 NNLYKAL 198 + + + L Sbjct: 182 SVIIEHL 188 >gi|255522067|ref|ZP_05389304.1| DNA polymerase III subunit delta' [Listeria monocytogenes FSL J1-175] Length = 330 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLFEGARGTGKKRTALWLAQSLFCLESTETELACGKCAN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 178 SLTAAGISEQKARIYASITGSVEEA 202 >gi|300814214|ref|ZP_07094490.1| hypothetical protein HMPREF9131_0937 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511638|gb|EFK38862.1| hypothetical protein HMPREF9131_0937 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 319 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 20/164 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HA LF G +GIGK YA Q +F++A + N + S F + + D + Sbjct: 29 HAYLFVGPKGIGK------YA----QAKNFARAILCGDNKNDKS-FCNLLYDYFHPDLIE 77 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 +S + +T K + + E + F S ++I+ID D + NALLK+L Sbjct: 78 VS---SKETIKKEQIEELIEKAGTKPFES------NKKIILIDGFDNVTIEGQNALLKTL 128 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EEP ++ IL+S IL TIRSR +KF ++S +Y L Sbjct: 129 EEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYL 172 >gi|229125268|ref|ZP_04254370.1| DNA polymerase III subunit delta' [Bacillus cereus 95/8201] gi|228658194|gb|EEL13932.1| DNA polymerase III subunit delta' [Bacillus cereus 95/8201] Length = 339 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 13/177 (7%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +N+ + + L + +++HA LF GE G K + + + + P Sbjct: 10 WNEVMQKQHIVGTILKNGLVNNKVNHAYLFNGEAGTLKKETALLFIKSLFCLENTERIP- 68 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 CN D + H D + +S P+ G I ++I+++ +S T+ Sbjct: 69 --CN-DCRNCNRINNNIHP--DVVIIS----PEEG---GSIKKEQIQQLHKEISYTSTEL 116 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ +ID V+ + +AAN+LLK LEEP IL++ +L TI+SRC + F Sbjct: 117 SRKIYLIDRVEMLTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTIQSRCQILNF 173 >gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM 2088] gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM 2088] Length = 318 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 37/206 (17%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 Y + LLF G G+GK T+ A +L + Sbjct: 30 YVEKKTLPNLLFAGPAGVGKTTVALALAREIL-------------------------GEY 64 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 +FL L+ S RT I+ F L +R++ +D VD M R+A Sbjct: 65 WQQNFLELNASDARGIDTVRT--------EIKNFCRLRPINAPFRIVFLDEVDNMTRDAQ 116 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKI 203 AL + +E + FIL + S I+ ++SRC+ +F L ++ K L E+ + Sbjct: 117 QALRREMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKENV 176 Query: 204 MGWDSKRDFVKIAAYGSVARAIKILH 229 + D + A G + +AI IL Sbjct: 177 DYEEKALDAIVYFAEGDLRKAINILQ 202 >gi|171780207|ref|ZP_02921111.1| hypothetical protein STRINF_01995 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281555|gb|EDT46990.1| hypothetical protein STRINF_01995 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 291 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPF 80 K +Q S RM+HA LF G+ F +A ++ A R C N P Sbjct: 12 KDFNQILKSDRMNHAYLFSGDFA------SFDFALYL--------AKSRFCENLQEGRPC 57 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 K + D + + TG+ +I D IR + S + G +V +I + Sbjct: 58 GKCRECQLIEDNDFSDVKIVKPTGQ---IIKTDTIREMMRDFSRSGFEGKSQVFIIQDCE 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 115 KMHINAANSLLKFIEEPQSSSYMILLTSDESKVLPTIKSRTQVFRF 160 >gi|88596575|ref|ZP_01099812.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 84-25] gi|88191416|gb|EAQ95388.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 84-25] gi|284926383|gb|ADC28735.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni IA3902] gi|315926579|gb|EFV05960.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928540|gb|EFV07840.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni 305] Length = 511 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 44/289 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + I I + L QK++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEEL 270 >gi|194468116|ref|ZP_03074102.1| DNA polymerase III, delta prime subunit [Lactobacillus reuteri 100-23] gi|194452969|gb|EDX41867.1| DNA polymerase III, delta prime subunit [Lactobacillus reuteri 100-23] Length = 337 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 18/183 (9%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 +K LS + + HA LF G G GK ++ + + F P + PD Sbjct: 21 QKILS----NNELAHAYLFVGPGGSGKMSIAQWLSLRL-----FCLHP-QDNEPDLTCAE 70 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 +++ S D +Y + P+ + I VDEIR ++ S +A G ++ +I D Sbjct: 71 CQRILSGNHPDIVYAA----PEGRQ----IKVDEIRHLKAEFSKSAVEGNKKIFIIKDAD 122 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M AAN+LLK +EEP V +++ +L TIRSR I+ L + L L + Sbjct: 123 KMTNGAANSLLKFIEEPGAGVYIFMLTTNKSAVLPTIRSRTQVIELPPLKRDALLTVLTE 182 Query: 201 LKI 203 I Sbjct: 183 HNI 185 >gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571] gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571] Length = 613 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 27/190 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS + SGR+ A + G +G+GK T A + Sbjct: 30 VLARKYRPQNFDDLIGQEAMVRTLSNAFASGRIAQAYILTGVRGVGKTTTARILARALNY 89 Query: 61 NPDFSKAPVRMCNPDPCSPFV---------KQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 P + P P + K + D + + + N R +I Sbjct: 90 EP---------MDGSPGGPSLDLSVFGKHCKDIIESRHVDVMEMDAASNTSINDIREII- 139 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 E R R ++ ++V +ID V ++ A N LLK+LEEPP+ V FI + Sbjct: 140 --EGSRYRPVMA------RYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIR 191 Query: 172 TILSTIRSRC 181 + T+ SRC Sbjct: 192 KVPVTVLSRC 201 >gi|329939428|ref|ZP_08288764.1| DNA polymerase III subunit delta' [Streptomyces griseoaurantiacus M045] gi|329301657|gb|EGG45551.1| DNA polymerase III subunit delta' [Streptomyces griseoaurantiacus M045] Length = 401 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + AN G W+VI+++ + +N +ANA+LK++EEP + +++L + + +L TI Sbjct: 119 VRKSFTSPAN-GRWQVILVEDAERLNEQSANAVLKAVEEPASRTVWLLCAPSVEDVLPTI 177 Query: 178 RSRCLSIKFNS 188 RSRC + + Sbjct: 178 RSRCRHVNLRT 188 >gi|190571334|ref|YP_001975692.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018730|ref|ZP_03334538.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357606|emb|CAQ55047.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995681|gb|EEB56321.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 527 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 25/181 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NP 62 + P + L G + + + L + ++ ++L G GIGK T R L P Sbjct: 7 YRPSSFKDLVGQDILVRILENAFTLNKIPQSILLSGSSGIGKTTTA-RIIALCLNCSLGP 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRY 120 F +PC +A + S +P + +V+++R I Sbjct: 66 TF----------EPCGSCTSCLA---------IKNSSHPDVVEIDAASHTSVEDVRAILG 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ NA NALLK+LEEPP V FIL + I T+ +R Sbjct: 107 DICYLPISSKFKVYIIDEVHMLSSNAFNALLKTLEEPPSSVKFILATTEIKKIPITVIAR 166 Query: 181 C 181 C Sbjct: 167 C 167 >gi|153822375|ref|ZP_01975042.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae B33] gi|126520082|gb|EAZ77305.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae B33] Length = 605 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 4/103 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL Sbjct: 31 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKP 90 Query: 189 LSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAIKI 227 +S N+ + L+++ + + DSK + + AA GS+ A+ + Sbjct: 91 ISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL 133 >gi|68537107|ref|YP_251812.1| DNA polymerase III subunits gamma and tau [Corynebacterium jeikeium K411] gi|68264706|emb|CAI38194.1| DNA polymerase III, gamma and tau subunits [Corynebacterium jeikeium K411] Length = 967 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + LS SGR++HA LF G +G GK + + + ++ Sbjct: 5 RKYRPATFAEVVGQSHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + C + D L + T VD++R +R Sbjct: 65 P--TSTPCGKC--ESCVSLAPGGPGNL--DVTELDAA---------THNGVDDMRELRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID ++ NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL 201 + F L+ ++ LE + Sbjct: 170 HNYPFRLLAPPDMRGLLESV 189 >gi|297158535|gb|ADI08247.1| DNA polymerase III subunits gamma and tau [Streptomyces bingchenggensis BCW-1] Length = 892 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPETYAEVIGQEHVTGPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P PC + +A + + G VD+ R +R Sbjct: 74 CEKGPT----PAPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L E+ I D V A GSV ++ ++ Sbjct: 183 HHYPFRLVPPGTLRDYLAEVCEREAIPVEDGVLPLVVRAGAGSVRDSMSVM 233 >gi|150008402|ref|YP_001303145.1| putative DNA polymerase III subunit delta [Parabacteroides distasonis ATCC 8503] gi|255015656|ref|ZP_05287782.1| putative DNA polymerase III, delta subunit [Bacteroides sp. 2_1_7] gi|298374886|ref|ZP_06984843.1| DNA polymerase III delta prime subunit [Bacteroides sp. 3_1_19] gi|149936826|gb|ABR43523.1| putative DNA polymerase III, delta subunit [Parabacteroides distasonis ATCC 8503] gi|298267386|gb|EFI09042.1| DNA polymerase III delta prime subunit [Bacteroides sp. 3_1_19] Length = 374 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 40/224 (17%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G E++++ L Q +G + HA LF + G G L YA ++ ++ Sbjct: 1 MYFKDIIGQEEVKERLRQSTRTGIVPHAQLFTEQGGAGAFPLALAYARYLNCT---NRTE 57 Query: 69 VRMCNPDPCSPFVKQMASHALH-----------------DFL-----------------Y 94 C P ++A LH D+L + Sbjct: 58 TDACGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEW 117 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 L Y + G + +I E I + LSL +R++M+ + ++ AN LLK + Sbjct: 118 LDYI---EAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKII 174 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EEPP K + +++S IL TI+SR I + + + A+ Sbjct: 175 EEPPMKTVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNAM 218 >gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] Length = 587 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +PC A + +TG V +IR I Sbjct: 71 IGPDGMGTPTT----EPCGVCEHCRAIMEGRHVDVMEMDAASRTG-------VGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ NA NALLK+LEEPP V FI + + T+ S Sbjct: 120 ESVNYRAASARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|93005893|ref|YP_580330.1| DNA-directed DNA polymerase [Psychrobacter cryohalolentis K5] gi|92393571|gb|ABE74846.1| DNA polymerase III, delta prime subunit [Psychrobacter cryohalolentis K5] Length = 372 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 23/177 (12%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HALL G QG+GK +R +L + P+ C +++ +L Sbjct: 38 LPHALLAAGMQGMGKRAFVWRLVAWLLCRAR-DEHPLGACGHCESCQWLRSGTHPSLQVL 96 Query: 93 LYLSYSLNPKTGKWRTV--------------------ITVDEIRRIRYFLSLTANTGYWR 132 +S +N + + I VD+IR ++ F+ G R Sbjct: 97 PLVSLPVNADSSAQKEALANSTKDKKSAKTASNASLKIKVDDIRALQPFI-YQGGQGM-R 154 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 + ++D + M AANALLK+LEEP +V LIS A +L TI+SR + ++ Sbjct: 155 ICVLDHAEKMTIAAANALLKTLEEPQAQVHLFLISDAPAQLLPTIKSRVQQLALQTI 211 >gi|293191966|ref|ZP_06609326.1| DNA polymerase III, subunit gamma and tau [Actinomyces odontolyticus F0309] gi|292820389|gb|EFF79377.1| DNA polymerase III, subunit gamma and tau [Actinomyces odontolyticus F0309] Length = 476 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P ++ G E + + L + R+ HA LF G +G GK T A + Q Sbjct: 7 RRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C +++A+ + G VD+ R +R Sbjct: 67 P--TDTPCGQCE------SCRELATGGPGSLDVVEIDAASHGG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 112 ATFAPVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L L L I + V A GSV + +L D++++ Sbjct: 172 HHYPFRLVPPDVLGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVL----DQLMA 227 Query: 238 SYID 241 ID Sbjct: 228 GAID 231 >gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] Length = 602 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y + Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTN 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|254829626|ref|ZP_05234313.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL N3-165] gi|254899514|ref|ZP_05259438.1| DNA polymerase III subunit delta' [Listeria monocytogenes J0161] gi|254913283|ref|ZP_05263295.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254937664|ref|ZP_05269361.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900] gi|258602044|gb|EEW15369.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL N3-165] gi|258610264|gb|EEW22872.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900] gi|293591284|gb|EFF99618.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 330 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLFEGTRGTGKNRTALWLAQSLFCLESTETELACGKCTN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 178 SLTAAGISEQKARIYASITGSVEEA 202 >gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str. Toulouse] gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse] Length = 640 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 12 VLARKYRPQNFSDLIGQETMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTA-RILARALN 70 Query: 60 -QNPDFSKAPVRMCNP--DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + D + P + N + C+ ++ H D + + + TG +D+IR Sbjct: 71 YKTKDIDQ-PTTVLNTLGEHCTQIIE--GRHI--DVIEMDAA--SHTG-------IDDIR 116 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + + ++V +ID V ++ A N LLK+LEEPP V FI + + T Sbjct: 117 EIIEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPIT 176 Query: 177 IRSRC 181 I SRC Sbjct: 177 ILSRC 181 >gi|296135949|ref|YP_003643191.1| DNA polymerase III, delta' subunit [Thiomonas intermedia K12] gi|295796071|gb|ADG30861.1| DNA polymerase III, delta' subunit [Thiomonas intermedia K12] Length = 360 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 3/92 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +++IRR+ + T++ G +V +I PVD +N AANALLK+LEEPP+ V F+L +H Sbjct: 130 IRIEQIRRLNDWSVSTSHRGRAKVALIYPVDALNAAAANALLKTLEEPPEDVQFLLGAHR 189 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSRC + +L +A +QL Sbjct: 190 LDALLPTIRSRC---RLAALPRPGAAEAQQQL 218 >gi|157415423|ref|YP_001482679.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81116] gi|157386387|gb|ABV52702.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 81116] gi|307748065|gb|ADN91335.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni M1] gi|315932303|gb|EFV11246.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni 327] Length = 509 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 44/289 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + I I + L QK++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|284007285|emb|CBA72611.1| DNA polymerase III subunit delta' [Arsenophonus nasoniae] Length = 329 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HHALL G+G L + + ++ + P M + C + M + D+ Sbjct: 24 HHALLLHANAGMGSEALVYAISRWLM-----CQQPEDMKSCGSCHS-CQLMLAQTHPDW- 76 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 + + + GK I ++ IR + L A G +VI ++ + A+NALLK+ Sbjct: 77 ---HKIVAEKGK--NTIGIESIRYLTEVLVGHAQQGGAKVIWFPRIEALTEAASNALLKT 131 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRC 181 LEEP F+L +L+T+RSRC Sbjct: 132 LEEPTNNTFFLLECRDPALLLATLRSRC 159 >gi|86152635|ref|ZP_01070840.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613206|ref|YP_001000834.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81-176] gi|167005747|ref|ZP_02271505.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81-176] gi|85843520|gb|EAQ60730.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249219|gb|EAQ72180.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 81-176] Length = 509 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 44/289 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + I I + L QK++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] Length = 601 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 19 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 78 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P DPC A + +TG V++IR I Sbjct: 79 VGEDGQGGPTT----DPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VNDIREII 127 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 128 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 187 Query: 180 RC 181 RC Sbjct: 188 RC 189 >gi|203288191|ref|YP_002223206.1| DNA polymerase III gamma and tau subunit [Borrelia recurrentis A1] gi|201085411|gb|ACH94985.1| DNA polymerase III gamma and tau subunit [Borrelia recurrentis A1] Length = 347 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 IT+ ++R+I+Y++ N +VI I+ ++ +N N NALLK LEEPP + FIL + Sbjct: 144 ITIKDVRKIKYWVLSEKNK--IKVIYINTIENLNFNVYNALLKILEEPPPNIYFILATRN 201 Query: 170 SPTILSTIRSRCLSIKF 186 I TI SR KF Sbjct: 202 KNKIPKTILSRLRIYKF 218 >gi|58699782|ref|ZP_00374419.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] gi|58533701|gb|EAL58063.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] Length = 241 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + + L + ++ ++L G G+GK T R L + S Sbjct: 56 PSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 111 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+I+ I + + Sbjct: 112 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYS 158 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +RC Sbjct: 159 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 214 >gi|254444327|ref|ZP_05057803.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae bacterium DG1235] gi|198258635|gb|EDY82943.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae bacterium DG1235] Length = 297 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V+++R +R + G ++V +ID V ++ A NALLK LEEPP+ V F+ + + Sbjct: 19 VEQVRALREDAQYAPSQGKYKVYIIDEVHMLSTGAFNALLKILEEPPEHVKFVFATTEAH 78 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +L TI SRC + E+ + + L+ + K G ++ AA +VAR Sbjct: 79 KVLPTIVSRCQRFDLKPIPEDLIRERLDLICKTEGIEADE-----AALKAVARLADGGMR 133 Query: 231 DCDKIISSYI 240 D I+ I Sbjct: 134 DSQSILDQMI 143 >gi|171913273|ref|ZP_02928743.1| DNA polymerase III, delta prime subunit [Verrucomicrobium spinosum DSM 4136] Length = 326 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 110 ITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I VD +R ++ +L +T++ R+++I + MN A NA L++LEEPP + LF+L+S Sbjct: 74 IKVDAVREQVEPYLFVTSSGAEHRLVVIVDAERMNVQAQNAFLRTLEEPPPRTLFLLLSE 133 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 L TI SR + I + E N K E Sbjct: 134 QPQQFLETILSRVIRISL--MPEENTRKLSE 162 >gi|317050749|ref|YP_004111865.1| hypothetical protein Selin_0561 [Desulfurispirillum indicum S5] gi|316945833|gb|ADU65309.1| hypothetical protein Selin_0561 [Desulfurispirillum indicum S5] Length = 308 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 12/99 (12%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR--VIMIDPV------DGMNRNAANAL 150 + P+ G+ IT+D+IR FL T+ G +R ++I+ D +NR NAL Sbjct: 71 IEPEKGQ----ITIDDIREGSDFLESTSVDGNFRYKALIIEQAEKMTSSDAVNRVQENAL 126 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 LK+LEEPP+ + L+S L T+RSR I F L Sbjct: 127 LKTLEEPPEGSILFLLSDVPSFFLPTVRSRLAYIHFQPL 165 >gi|212635619|ref|YP_002312144.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] gi|212557103|gb|ACJ29557.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] Length = 305 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 49/77 (63%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD+IR + L+ TA RV +I + +N+ +ANALLK+LEEP ++ + +L +++ Sbjct: 86 IKVDQIRGLCQKLTTTAQQSGRRVAVILNCERLNQASANALLKTLEEPGKETILLLQANS 145 Query: 170 SPTILSTIRSRCLSIKF 186 +++TI SRC ++ Sbjct: 146 PSRLMATISSRCQRVQV 162 >gi|47096980|ref|ZP_00234555.1| DNA polymerase III, delta subunit [Listeria monocytogenes str. 1/2a F6854] gi|47014643|gb|EAL05601.1| DNA polymerase III, delta subunit [Listeria monocytogenes str. 1/2a F6854] Length = 322 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + A + N C+ Sbjct: 8 KIFSKSVRENRLSHGYLFEGTRGTGKNRTALWLAQSLFCLESTETELACGKCTN---CT- 63 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 64 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 112 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 113 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 169 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 170 SLTAAGISEQKARIYASITGSVEEA 194 >gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter denitrificans OCh 114] gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114] Length = 582 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC A H D + + + N TG V IR Sbjct: 71 IGPDGTGRPTT----DPCGTCEHCTAIMEGRHVDVMEMDAASN--TG-------VANIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 177 Query: 178 RSRC 181 SRC Sbjct: 178 LSRC 181 >gi|289706015|ref|ZP_06502388.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58] gi|289557217|gb|EFD50535.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58] Length = 1152 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L R++HA LF G +G GK T R L + Sbjct: 7 RRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSA-RILARCL---N 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P P PC + +A+ L G V++ R +R Sbjct: 63 CAQGPT----PTPCGECDSCRDLATGGPGSLDVLEIDAASHGG-------VEDARGLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++++ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 172 HHYPFRLVPPEPLIAYLEQL 191 >gi|126658955|ref|ZP_01730097.1| DNA polymerase III subunit delta' [Cyanothece sp. CCY0110] gi|126619753|gb|EAZ90480.1| DNA polymerase III subunit delta' [Cyanothece sp. CCY0110] Length = 311 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN---PDFSKAP 68 ++L G L Q R+ A LF G GIG+A LG + +L + P+ +A Sbjct: 5 RQLIGQPSGVALLQQAIAKNRIAPAYLFAGPNGIGRA-LGAKCFTQLLLSLNLPEEQQAR 63 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLT 125 + D P + H L+ ++G R + +++IR I FLS Sbjct: 64 DKKRVLDRNHPDFYWVEPTYQHQGQLLTLKEAQESGLKRKAPPQVRIEQIRDITQFLSRP 123 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 V++I+ + M AAN LLK+LEEP K ILI+ ++ ++L T+ SRC I Sbjct: 124 PLEASRCVVVIEAAETMTEAAANGLLKTLEEP-GKATLILIAPSADSLLPTLVSRCQKIP 182 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 F LS+ +L L +L + D + ++ GS AI Sbjct: 183 FYRLSDAHLKTVLGRLGYEEIINHPDIIGLSQ-GSPGEAI 221 >gi|91176620|gb|ABE26697.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila] Length = 274 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 14/134 (10%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + G +++ +ID V +++++ NALLK+LEEPP V FIL + Sbjct: 3 VEDTRDLLDNIQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQ 62 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARA 224 + T+ SRCL L + +QL+++ + + DF + AA GS+ A Sbjct: 63 KLPVTVLSRCLQFNLKHLPAELIN---QQLQLILQEERLDFEIQALDILAQAARGSMRDA 119 Query: 225 IKILHYDCDKIISS 238 + +L D+ I+S Sbjct: 120 LSLL----DQAITS 129 >gi|282882159|ref|ZP_06290798.1| putative DNA polymerase III subunit delta' [Peptoniphilus lacrimalis 315-B] gi|281297924|gb|EFA90381.1| putative DNA polymerase III subunit delta' [Peptoniphilus lacrimalis 315-B] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 24/166 (14%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASHALHDF 92 HA LF G +GIGK +A +L + K CN D P + +++S Sbjct: 29 HAYLFVGPKGIGKFAQAKNFARAILCGDN--KNDKSFCNLLYDYFHPDLIEVSS------ 80 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + I ++I + ++I+ID D + NALLK Sbjct: 81 --------------KETIKKEQIEELIEKAGTKPFESNKKIILIDGFDNVTIEGQNALLK 126 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +LEEP ++ IL+S IL TIRSR +KF ++S +Y L Sbjct: 127 TLEEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYL 172 >gi|119025181|ref|YP_909026.1| DNA polymerase III subunit delta' [Bifidobacterium adolescentis ATCC 15703] gi|118764765|dbj|BAF38944.1| possible DNA polymerase III delta prime subunit [Bifidobacterium adolescentis ATCC 15703] Length = 382 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + + L G G G++ + +A L++PD N +P +Q+ + D Sbjct: 28 IAQSWLICGPPGSGRSNVARAFAA-ALESPDHG------LNDEPTK-TTEQVLAGTHPDV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 L+ + + I + E+R I T WR+I+I+ VD M N LLK Sbjct: 80 SVLATN--------KVTIGIGEVRDIITTSEQMPGTAPWRIIIIEDVDRMMERTTNVLLK 131 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +EEP +++L + ++ +L TIRSR + S + K LE Sbjct: 132 EIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSNQAVAKFLE 178 >gi|205355902|ref|ZP_03222671.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8421] gi|205346336|gb|EDZ32970.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8421] Length = 509 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 44/289 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + I I + L +K++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|312866449|ref|ZP_07726667.1| putative DNA polymerase III, delta' subunit [Streptococcus downei F0415] gi|311098143|gb|EFQ56369.1| putative DNA polymerase III, delta' subunit [Streptococcus downei F0415] Length = 287 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VI D IR + S + G +V +I D M+ NAAN+LLK +EEP IL++ Sbjct: 82 NVIKTDTIRELLRDFSRSGFEGQSQVFIIRDSDKMHVNAANSLLKFIEEPQSSSYMILLT 141 Query: 168 HASPTILSTIRSRCLSIKF 186 +L+TI+SRC +F Sbjct: 142 SDESKVLATIKSRCQIFRF 160 >gi|291303584|ref|YP_003514862.1| DNA polymerase III subunits gamma and tau [Stackebrandtia nassauensis DSM 44728] gi|290572804|gb|ADD45769.1| DNA polymerase III, subunits gamma and tau [Stackebrandtia nassauensis DSM 44728] Length = 690 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 37/250 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L +GR++HA LF G +G GK T R L + Sbjct: 7 RKYRPQSFAEVIGQEHVTEPLISAISNGRLNHAYLFSGPRGCGK-TSSARILARSL---N 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--------TVDEI 115 +K P P PC L+ G VI VD+ Sbjct: 63 CAKGP----TPTPCGECDS-------------CVGLSAGGGGSIDVIEIDAASHGGVDDA 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R +R +++ +ID ++ NALLK +EEPP V+F+ + +L Sbjct: 106 RELRERAVFAPVNSRYKIYVIDEAHMVSSAGFNALLKLVEEPPDYVMFVFATTEPEKVLP 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 TIRSR F + + E+L I +S V A GS + +L Sbjct: 166 TIRSRTHHYPFRLIPPAAMRGLCEKLCHEEGITVEESVYPLVIRAGAGSARDTLSVL--- 222 Query: 232 CDKIISSYID 241 D++I+ D Sbjct: 223 -DQLIAGAGD 231 >gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330] gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330] Length = 602 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLHRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|158335444|ref|YP_001516616.1| DNA polymerase III gamma and tau subunits [Acaryochloris marina MBIC11017] gi|158305685|gb|ABW27302.1| DNA polymerase III gamma and tau subunits [Acaryochloris marina MBIC11017] Length = 688 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 21/214 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 L G + I L+ R+ A LF G +G GK + A + L + ++ P Sbjct: 18 LVGQDAIATTLTNAIEFERIAPAYLFTGPRGTGKTSSARILAKSLNCLNSQTPTQTPCGT 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C+ +++A D + + + N TG VD IR + + Sbjct: 78 CS------VCQEVALGTSLDVIEIDAASN--TG-------VDNIRDLIERAQFAPVQCRF 122 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +D V ++ A NALLK+LEEPP +V+FIL + +L TI SRC F ++ Sbjct: 123 KIYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIAL 182 Query: 192 NNLYKAL----EQLKIMGWDSKRDFVKIAAYGSV 221 + + + L EQ I + + + A G + Sbjct: 183 DPMIQHLTHIAEQESIAITPTAVELIAQVAQGGL 216 >gi|91176618|gb|ABE26696.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila] Length = 274 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 14/134 (10%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + G +++ +ID V +++++ NALLK+LEEPP V FIL + Sbjct: 3 VEDTRDLLDNIQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQ 62 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARA 224 + T+ SRCL L + +QL+++ + + DF + AA GS+ A Sbjct: 63 KLPVTVLSRCLQFNLKHLPAELIN---QQLQLILQEERLDFEIQALDILAQAARGSMRDA 119 Query: 225 IKILHYDCDKIISS 238 + +L D+ I+S Sbjct: 120 LSLL----DQAITS 129 >gi|328883349|emb|CCA56588.1| DNA polymerase III delta prime subunit [Streptomyces venezuelae ATCC 10712] Length = 400 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCN-PDPCSPFVKQMAS 86 + +M HA LF G G G+AT R LQ +PD + C D C + + + Sbjct: 40 ASKMTHAWLFTGPPGSGRATA-ARAFAAALQCVSPDRALGGAPGCGFCDGCHTTL--VGT 96 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 HA D + L I V E R + L+ G W+VI+++ D + A Sbjct: 97 HA--DVEIVRTDL--------LSIGVKETRDLVRRAQLSPAGGRWQVIVLEDADRLTEGA 146 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 N LLK++EEP + +++L + + +L TIRSRC + + Sbjct: 147 GNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLTLRT 188 >gi|296392668|ref|YP_003657552.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296179815|gb|ADG96721.1| AAA ATPase [Segniliparus rotundus DSM 44985] Length = 385 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 23/165 (13%) Query: 38 LFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LF G G G++ +A + Q P+ R C S F SH D Sbjct: 36 LFVGPPGSGRSVAALSFAAALQCQAPEPGCGECRTCR----SVFA---GSH--PDV---- 82 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLS-LTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 LNP+ I+V EIR + + L A+ WR+++++ D + +A NALLK++E Sbjct: 83 RRLNPQG----LSISVAEIREATGWTARLPASP--WRILLVEDADRLTESATNALLKAVE 136 Query: 156 EPPQKVLFILISHA-SP-TILSTIRSRCLSIKFNSLSENNLYKAL 198 EP + +F+L + + P I T+RSRC + + S + K L Sbjct: 137 EPSSRAVFLLCAPSVDPHDIAVTLRSRCRLVSLGAPSREQVAKVL 181 >gi|317123591|ref|YP_004097703.1| DNA polymerase III subunits gamma and tau [Intrasporangium calvum DSM 43043] gi|315587679|gb|ADU46976.1| DNA polymerase III, subunits gamma and tau [Intrasporangium calvum DSM 43043] Length = 779 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 95/239 (39%), Gaps = 21/239 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L Q +GR+ HA LF G +G GK T A + Sbjct: 7 RRYRPESFAEVIGQEHVTEPLMQALRTGRVGHAYLFSGPRGCGKTTSARILARCLNCEEG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C C + D + + + + VD+ R +R S Sbjct: 67 PTPTPCGVCQS--CVALARGGPGSV--DVIEIDAASH---------GGVDDARDLRERAS 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 114 YGPAQSRFKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSRTHH 173 Query: 184 IKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + L LEQ + FV A GSV ++ +L D++I+ Sbjct: 174 YPFRLVPPAKLSSYMESLLEQEHVAVAPGVLSFVVRAGGGSVRDSLSVL----DQLIAG 228 >gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] Length = 584 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 16/184 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH-DFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC A H D + + + N TG V IR Sbjct: 71 IGPDGTSGPTT----EPCGTCEHCTAIMEGRHVDVMEMDAASN--TG-------VANIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 177 Query: 178 RSRC 181 SRC Sbjct: 178 LSRC 181 >gi|239916820|ref|YP_002956378.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] gi|239838027|gb|ACS29824.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] Length = 1159 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L R++HA LF G +G GK T R L + Sbjct: 7 RRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSA-RILARCL---N 62 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P P PC + +A+ L G V++ R +R Sbjct: 63 CAQGPT----PTPCGECDSCRDLATGGPGSLDVLEIDAASHGG-------VEDARGLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++++ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 172 HHYPFRLVPPEPLIAYLEQL 191 >gi|212717036|ref|ZP_03325164.1| hypothetical protein BIFCAT_01983 [Bifidobacterium catenulatum DSM 16992] gi|212660024|gb|EEB20599.1| hypothetical protein BIFCAT_01983 [Bifidobacterium catenulatum DSM 16992] Length = 865 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 104/267 (38%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + ++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDENKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKI---MGWDSKRDFVKI-------AAY 218 F + + + LEQ L++ G S RD + + A Sbjct: 172 HHYPFRLVPKEVMGPYLEQICEDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYIDLI 243 GS+A A+ +L + D +IS ID + Sbjct: 232 GSIAYDSAVALLGFTPDALISEAIDAV 258 >gi|57238032|ref|YP_179281.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni RM1221] gi|57166836|gb|AAW35615.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni RM1221] gi|315058589|gb|ADT72918.1| DNA polymerase III subunits gamma/ tau [Campylobacter jejuni subsp. jejuni S3] Length = 509 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 44/289 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR +F + + N+L + L + + + F+ + GS+ + +L D Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----D 221 Query: 234 KIISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + I I + L +K++ +L++D++ F +L E Sbjct: 222 QAIIFCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13] gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFNDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIKVDDASLAMIARAGEGSARDSLSI 231 >gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit [Schistosoma mansoni] gi|238666797|emb|CAZ37262.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Schistosoma mansoni] Length = 245 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 41/230 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L H+DI K + ++ + R+ H LLF G G GK + A + Sbjct: 8 YRPSSIEDLISHDDISKTIKRFIDNDRLPH-LLFYGPPGTGKTSTILAAAKRL------- 59 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLS 123 + +Q +S L LN + +D +R + + + Sbjct: 60 --------------YSRQFSSMVLE--------LNASDDRG-----IDVVREQVLSFAST 92 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T G ++++++D D M ++A NAL + +E+ + F LI + I+ I+SRC Sbjct: 93 KTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTK 152 Query: 184 IKFNSLSENNLYKALEQLKI-MGWDSKRDFVKIA---AYGSVARAIKILH 229 +F L+ N++ L ++ G D D +K A G + ++I +L Sbjct: 153 FRFAPLAFNDVSTCLRKIASNEGVDLTDDGIKAIYQFASGDMRKSINLLQ 202 >gi|229816762|ref|ZP_04447044.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM 20098] gi|229785778|gb|EEP21892.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM 20098] Length = 906 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQEQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LEQ+ Sbjct: 172 HHYPFRLVPQEIMGPYLEQI 191 >gi|99034728|ref|ZP_01314659.1| hypothetical protein Wendoof_01000519 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 194 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + + L + ++ ++L G G+GK T R L + S Sbjct: 9 PSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 64 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+I+ I + + Sbjct: 65 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYS 111 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +RC Sbjct: 112 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 167 >gi|290959184|ref|YP_003490366.1| DNA polymerase subunit [Streptomyces scabiei 87.22] gi|260648710|emb|CBG71823.1| putative DNA polymerase subunit [Streptomyces scabiei 87.22] Length = 793 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L ++ KI ++ V A GSV ++ ++ D++++ Sbjct: 173 HHYPFRLVPPGTLREYLAEVCGKEKIPVDEAVLPLVVRAGAGSVRDSMSVM----DQLLA 228 Query: 238 SYID 241 D Sbjct: 229 GSTD 232 >gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 39/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I K L Y +G M H LLF G G+GK T A + Sbjct: 27 IVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF-------------- 71 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WR 132 + H+FL L+ S R + + E +++ F G ++ Sbjct: 72 -----------GENWRHNFLELNAS------DERGINVIRE--KVKEFARTKPIGGASFK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L + Sbjct: 113 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 172 Query: 193 NLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 ++ K L + + G + + ++ Y G + RAI IL Sbjct: 173 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213 >gi|16077099|ref|NP_387912.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. subtilis str. 168] gi|221307840|ref|ZP_03589687.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. subtilis str. 168] gi|221312162|ref|ZP_03593967.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317095|ref|ZP_03598389.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. subtilis str. JH642] gi|221321358|ref|ZP_03602652.1| DNA polymerase III subunit delta' [Bacillus subtilis subsp. subtilis str. SMY] gi|586870|sp|P37540|HOLB_BACSU RecName: Full=DNA polymerase III subunit delta' gi|467421|dbj|BAA05267.1| similar to B. subtilis DnaH [Bacillus subtilis] gi|2632298|emb|CAB11807.1| DNA polymerase III delta' subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 329 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 32 RMHHALLFEGEQGIGK--ATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASH 87 R+ HA LFEG++G GK A L + L+ +PC K++ S Sbjct: 27 RLSHAYLFEGKKGTGKLDAALLLAKSFFCLEG-----------GAEPCESCRNCKRIES- 74 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 H L+L + P I +I+ ++ S T + ++ +I D M NAA Sbjct: 75 GNHPDLHL---VQPDG----LSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAA 127 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 N+LLK LEEP + + +LI+ +L TI SRC ++ F L KA+E +++ D Sbjct: 128 NSLLKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQP----KAIED-RLIEQD 182 Query: 208 SKRDFVKIAA--YGSVARAIKILHYD 231 ++ A +VA A+++ D Sbjct: 183 VSPHMARLLANMTNNVAEAVELSRND 208 >gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M163/99/10] gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTVRILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|42520868|ref|NP_966783.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410608|gb|AAS14717.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila melanogaster] Length = 533 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + + L + ++ ++L G G+GK T R L + S Sbjct: 9 PSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 64 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+I+ I + + Sbjct: 65 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYS 111 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +RC Sbjct: 112 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 167 >gi|256112542|ref|ZP_05453463.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 3 str. Ether] gi|265993981|ref|ZP_06106538.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str. Ether] gi|262764962|gb|EEZ10883.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str. Ether] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum] Length = 341 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 41/233 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE+I L++ R+ H LLF G G GK T A ++ P Sbjct: 18 YRPATLDDLVSHEEIIATLAKLVKKRRLPH-LLFYGPPGTGK-TSAILVAARMMFTP--- 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 KQ+AS L L+ S + G R D+I +L Sbjct: 73 ----------------KQLASMVLE----LNASDDRGIGIVR-----DQIMNFAQTKTLH 107 Query: 126 AN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + ++I++D D M ++A NAL + +E+ + V F +I + I+ ++SRC Sbjct: 108 VDENGKSHIKLIILDEADAMTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCT 167 Query: 183 SIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F L E + L E LK + D +R +K+A G + R + IL Sbjct: 168 RFRFAPLKEEQILPRLRHIAKSESLK-LTEDGERALMKLAG-GDMRRVLNILQ 218 >gi|21221960|ref|NP_627739.1| DNA polymerase III subunit delta' [Streptomyces coelicolor A3(2)] gi|256786953|ref|ZP_05525384.1| DNA polymerase III subunit delta' [Streptomyces lividans TK24] gi|289770847|ref|ZP_06530225.1| DNA polymerase III subunit delta' [Streptomyces lividans TK24] gi|4539558|emb|CAB38477.1| putative DNA polymerase [Streptomyces coelicolor A3(2)] gi|289701046|gb|EFD68475.1| DNA polymerase III subunit delta' [Streptomyces lividans TK24] Length = 401 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + AN G W++I+++ + +N +ANA+LK++EEP + +++L + + +L TI Sbjct: 119 VRKSFTSPAN-GRWQIILVEEAERLNEKSANAVLKAVEEPAPRTVWLLCAPSVEDVLPTI 177 Query: 178 RSRCLSIKFNSLS 190 RSRC + + S Sbjct: 178 RSRCRHLNLRTPS 190 >gi|225626583|ref|ZP_03784622.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str. Cudo] gi|260169621|ref|ZP_05756432.1| DNA polymerase III subunits gamma and tau [Brucella sp. F5/99] gi|261759150|ref|ZP_06002859.1| DNA polymerase III gamma and tau [Brucella sp. F5/99] gi|225618240|gb|EEH15283.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str. Cudo] gi|261739134|gb|EEY27130.1| DNA polymerase III gamma and tau [Brucella sp. F5/99] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|115526801|ref|YP_783712.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris BisA53] gi|115520748|gb|ABJ08732.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris BisA53] Length = 629 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 19/186 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P + L G + + + LS + +GR+ A + G +G+GK T R L Sbjct: 41 VLARKYRPNSFEHLIGQDAMVRTLSNAFETGRIPQAWILTGVRGVGKTTTA-RILARALN 99 Query: 60 -QNPDFS-KAP-VRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + D S KAP + M P C ++ H D L + + + TG VD++ Sbjct: 100 YETADGSVKAPTIHMPGPGVHCQAIME--GRH--MDVLEMDAASH--TG-------VDDV 146 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R+I + ++V +ID V ++ A NA LK+LEEPP+ F+ + + Sbjct: 147 RQINDSVRYAPAGARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPV 206 Query: 176 TIRSRC 181 T+ SRC Sbjct: 207 TVLSRC 212 >gi|297193443|ref|ZP_06910841.1| DNA polymerase III subunits gamma and tau [Streptomyces pristinaespiralis ATCC 25486] gi|297151784|gb|EFH31358.1| DNA polymerase III subunits gamma and tau [Streptomyces pristinaespiralis ATCC 25486] Length = 458 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + G VD+ R +R Sbjct: 74 CEQGP----TPTPCGECQSCQDLARTGPGSIDVIEIDAASHGG-------VDDARELREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L ++ I D V A GSV ++ ++ D++++ Sbjct: 183 HHYPFRLVPPGTLRTYLAEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVM----DQLLA 238 Query: 238 SYID 241 D Sbjct: 239 GAAD 242 >gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1] gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1] gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|311743404|ref|ZP_07717211.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum DSM 15272] gi|311313472|gb|EFQ83382.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum DSM 15272] Length = 679 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L + R++HA LF G +G GK T R L + Sbjct: 9 RRYRPETFAEVIGQEHVTDPLRHALAANRVNHAYLFSGPRGCGKTT-SARILARAL---N 64 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +APV DPC + +A + G VD+ R +R Sbjct: 65 CEQAPVS----DPCGECQSCRDLARGGPGSVDVIEIDAASHGG-------VDDARDLRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID ++ NALLK +EEPP + FI + ++ TIRSR Sbjct: 114 AFFAPVSSRYKVYIIDEAHMVSPQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L QL Sbjct: 174 HHYPFRLVPPKTLGDYLLQL 193 >gi|255323479|ref|ZP_05364610.1| DNA polymerase III subunit gamma/tau [Campylobacter showae RM3277] gi|255299516|gb|EET78802.1| DNA polymerase III subunit gamma/tau [Campylobacter showae RM3277] Length = 831 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + L+ R+ HA LF G +G GK T R FSKA V C Sbjct: 16 ELVGQEAVSTSLTHALDENRLTHAYLFSGLRGSGK-TSSARI---------FSKALV--C 63 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLSLTANTGY 130 + P S +Q A+ + G+ +I +D R I L T Y Sbjct: 64 DHGPTSQPCEQCAN-----------CIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKY 112 Query: 131 ------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++ +ID V ++ A NALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 APAIARFKIFIIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHF 172 Query: 185 KFNSLS 190 +F +S Sbjct: 173 RFRQIS 178 >gi|298345976|ref|YP_003718663.1| DNA polymerase III subunit delta' [Mobiluncus curtisii ATCC 43063] gi|298236037|gb|ADI67169.1| DNA polymerase III, delta prime subunit [Mobiluncus curtisii ATCC 43063] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 42/59 (71%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G W +I+I+ D M+ ++N LLKS+EEPP++ +++L + ++ +LSTIRSR ++ + Sbjct: 148 GEWNIIIIEDYDRMSEYSSNLLLKSIEEPPERTVWVLCAPSAADVLSTIRSRTRLVQLS 206 >gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1 str. 9-941] gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis biovar Abortus 2308] gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC 23365] gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6 str. 870] gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str. 513] gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str. 686] gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis B2/94] gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4 str. 292] gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M292/94/1] gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33] gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1] gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94] gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9 str. C68] gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus bv. 1 str. 9-941] gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region [Brucella melitensis biovar Abortus 2308] gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC 23365] gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|225630794|ref|YP_002727585.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi] gi|225592775|gb|ACN95794.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi] Length = 533 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + + L + ++ ++L G G+GK T R L + S Sbjct: 9 PSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 64 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+I+ I + + Sbjct: 65 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYS 111 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +RC Sbjct: 112 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 167 >gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC 23457] gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis ATCC 23457] gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28] gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis M5-90] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|294791167|ref|ZP_06756324.1| DNA polymerase III, gamma and tau subunits [Scardovia inopinata F0304] gi|294457638|gb|EFG25992.1| DNA polymerase III, gamma and tau subunits [Scardovia inopinata F0304] Length = 771 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 104/267 (38%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQN 61 R + P + G + + L + G++ HA LF G +G GK + A V Q Sbjct: 7 RRYRPDTFDGVVGQDQVTVPLQRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C + C K +A++ + G VD+ R +R Sbjct: 67 P--TSHPCGVC--ESC----KDLATNGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKIM---GWDSKRDFVKIAAY---GSV- 221 F + + LE LK+ G S RD + + GSV Sbjct: 172 HHYPFRLVPPEIMGPYLEDICQKEGIKADPGVLKLTMRSGDGSVRDTLSVLDQLMAGSVD 231 Query: 222 -----ARAIKILHYDCDKIISSYIDLI 243 A+ +L Y D +IS ID + Sbjct: 232 NRIDYQSAVALLGYTPDALISDAIDAV 258 >gi|218283199|ref|ZP_03489269.1| hypothetical protein EUBIFOR_01857 [Eubacterium biforme DSM 3989] gi|218216017|gb|EEC89555.1| hypothetical protein EUBIFOR_01857 [Eubacterium biforme DSM 3989] Length = 304 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPF 80 + LS + R+ +A LF G +G K +A ++ ++ D + C + C Sbjct: 15 QMLSNALKNQRVANAYLFHGPKGSSKLETAILFAQSIICEHTDNDGFACQEC--ESC--- 69 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 K++ + D++ +S N + K D + +F S +A R+ ++D D Sbjct: 70 -KRIENEESLDYMIVS---NDRIKK------KDIVDLQTFFESTSAGKQNARIYILDHYD 119 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +A+N+LLK LEEP + + ILI+ +L TI+SRC +I F Sbjct: 120 KATPDASNSLLKFLEEPSEGIYGILIADEKSNVLPTIQSRCQAIHF 165 >gi|218562769|ref|YP_002344548.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360475|emb|CAL35272.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 509 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 35/235 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SR +F + + N+L + L + + + F+ + GS+ + +L Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL 220 >gi|159906344|gb|ABX10863.1| DNA polymerase III gamma and tau subunits [Rhodomonas sp. CCMP1178] Length = 365 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 16/170 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A L G+ G GK TL R L D P +C C + H Sbjct: 38 KLTFAYLLIGQHGSGKTTLA-RVVAKALNCIDMKNIPCNIC--QNC------INIHLGQS 88 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F TG ++ IR + + T G ++V +ID ++ +A N+LL Sbjct: 89 FDVYEIDAAKNTG-------IEHIRDVIERIQFTPIMGQYKVCIIDEAHMLSTSAFNSLL 141 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 K++E PP +FIL + I +TI SRC I + L A+ ++ Sbjct: 142 KTIESPPLNTIFILSTTIIHKIPNTIISRCQKIYLEPIRNQELTLAISKI 191 >gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] Length = 602 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|317057393|ref|YP_004105860.1| hypothetical protein Rumal_2757 [Ruminococcus albus 7] gi|315449662|gb|ADU23226.1| hypothetical protein Rumal_2757 [Ruminococcus albus 7] Length = 324 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 20/177 (11%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +++G++ + K ++ +GR H+++ GE+G+GK + +Y L + S P C Sbjct: 2 KIYGNQTLLKQTARMVSAGREPHSIIIHGEKGLGKKAIA-KYIAAQLMCEEHSGTPCGKC 60 Query: 73 NPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY 130 C Q+ H D ++ + N K + V++IR I + N G Sbjct: 61 RS--C-----QLIDRGAHPDLIFAQH--NDKGNYY-----VEDIRDTIVADAPVAPNEGD 106 Query: 131 WRVIMIDPVD---GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +V +I +D N LLK +EEPP IL + + T L TI SRC+S+ Sbjct: 107 IKVYVIPDLDLSVQTTVQVQNILLKLIEEPPDHTALILTARSRETFLYTIISRCVSL 163 >gi|304390266|ref|ZP_07372220.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326748|gb|EFL93992.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 17/156 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ L G G G++T +A + ++PD C P V+Q +HA D Sbjct: 67 MTHSWLVVGPPGSGRSTAAKAFAAALECEDPDNPG-----CGICPACRDVRQ-GTHA--D 118 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L+ + I D+++ + G W +I+I+ D M+ ++N LL Sbjct: 119 VSVLTTEM--------VEIKFDDVKALVQQAYRRPVRGEWNIIIIEDYDRMSEYSSNLLL 170 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 KS+EEPP++ +++L + ++ +LSTIRSR ++ + Sbjct: 171 KSIEEPPERTVWVLCAPSAADVLSTIRSRTRLVQLS 206 >gi|300744279|ref|ZP_07073298.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa M567] gi|300380004|gb|EFJ76568.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa M567] Length = 957 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E + + L + R++HA LF G +G GK T A + Q Sbjct: 7 RRYRPETFAEVIGQEHVTEPLITALTNNRVNHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C D C ++++ + G VD R +R Sbjct: 67 P--TPTPCGVC--DSC----RELSRDGGGSLDVIEMDAASHGG-------VDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ + FI + +L TIRSR Sbjct: 112 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE+L Sbjct: 172 HHYPFRLVPPEVLLPYLEKL 191 >gi|315657531|ref|ZP_07910413.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492003|gb|EFU81612.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 17/156 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 M H+ L G G G++T +A + ++PD C P V+Q +HA D Sbjct: 67 MTHSWLVVGPPGSGRSTAAKAFAAALECEDPDNPG-----CGICPACRDVRQ-GTHA--D 118 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 L+ + I D+++ + G W +I+I+ D M+ ++N LL Sbjct: 119 VSVLTTEM--------VEIKFDDVKALVQQAYRRPVRGEWNIIIIEDYDRMSEYSSNLLL 170 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 KS+EEPP++ +++L + ++ +LSTIRSR ++ + Sbjct: 171 KSIEEPPERTVWVLCAPSAADVLSTIRSRTRLVQLS 206 >gi|148926165|ref|ZP_01809850.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8486] gi|145845336|gb|EDK22429.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8486] Length = 509 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 31/204 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + L GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCLAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSENNLYKALEQL 201 SR +F + ++ + L+++ Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEI 189 >gi|325696292|gb|EGD38183.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK160] Length = 296 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 111/272 (40%), Gaps = 38/272 (13%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF--SKAPVRMCNPDPCSPFVKQMASHA 88 GR+ HA LF G G F A +L F +K V C + A Sbjct: 24 GRLSHAYLFTGAFG------SFEMA-QILSQSLFCENKQGVWPCQSCRSCRLI------A 70 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 DF ++ G +I D +R + S + G +V +I D M+ NAAN Sbjct: 71 AEDFSDVTV-----VGPVNNIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAAN 125 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQ 200 +LLK +EEP ++ L++ IL TIRSR F +SL ++ L K+ + Sbjct: 126 SLLKVIEEPQSEIYIFLLTADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAE 185 Query: 201 LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIA 259 L ++ + +A + + +C++ + D P Q + + ++ ++A Sbjct: 186 LLAAYSQTQSEAASLAHNNAFFELVS----ECERFVK---DFQTRPSQAFLQVSRLAKLA 238 Query: 260 DELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ Q+Q F L KEI + AL Sbjct: 239 DDKEKQEQ--VFKLLEVLFYKEIATESGRQAL 268 >gi|320332634|ref|YP_004169345.1| DNA polymerase III subunit [Deinococcus maricopensis DSM 21211] gi|319753923|gb|ADV65680.1| DNA polymerase III subunit, putative [Deinococcus maricopensis DSM 21211] Length = 314 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 19/160 (11%) Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKW--RTVITVDEIR-----------R 117 P PC P + + + D L + TG+ R +I + I+ Sbjct: 55 TPGPCGVCPSCRALGAGQHPDVLIVEPRATTSTGRAARRKLIPIGAIQADKDTDHEFEGH 114 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + F + A T RV++ D + + AANALLK +EEPP LF+ ++ +L TI Sbjct: 115 VLEFAEVRA-TFARRVVVFDGAEFLGDTAANALLKLVEEPPHSTLFVFLTEDVAAVLPTI 173 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 SR + + + +L +A L +MG + + + AA Sbjct: 174 ASRAARVNVTPVPDADLARA---LALMGEAADAELLGFAA 210 >gi|330836604|ref|YP_004411245.1| hypothetical protein Spico_0635 [Spirochaeta coccoides DSM 17374] gi|329748507|gb|AEC01863.1| hypothetical protein Spico_0635 [Spirochaeta coccoides DSM 17374] Length = 395 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 48/82 (58%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +T+ + R I+ + LTA R+I+I+ ++ A N+LLK LEEPP+ FIL++ Sbjct: 176 TLTIAQCREIQGWCRLTALDRRPRIIIIEALEQATEGARNSLLKLLEEPPENSRFILVTS 235 Query: 169 ASPTILSTIRSRCLSIKFNSLS 190 +++TI SR +F SLS Sbjct: 236 HPERMMATILSRVRQYRFASLS 257 >gi|302559824|ref|ZP_07312166.1| DNA polymerase III, subunit gamma and tau [Streptomyces griseoflavus Tu4000] gi|302477442|gb|EFL40535.1| DNA polymerase III, subunit gamma and tau [Streptomyces griseoflavus Tu4000] Length = 459 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 30 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 85 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P P PC + +A + + G VD+ R +R Sbjct: 86 CEKGP----TPTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 134 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 135 AFFGPAGSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 194 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L + L ++ Sbjct: 195 HHYPFRLVPPGTLREYLGEV 214 >gi|313143667|ref|ZP_07805860.1| DNA polymerase III subunits gamma and tau [Helicobacter cinaedi CCUG 18818] gi|313128698|gb|EFR46315.1| DNA polymerase III subunits gamma and tau [Helicobacter cinaedi CCUG 18818] Length = 545 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 15/176 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I + LS S + HA LF G +G GK + +A + + P+ Sbjct: 1 MVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFARAL----ECESGPIST-- 54 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC +A AL + ++ + + +D+I+++ + G +++ Sbjct: 55 --PCGSCASCVA--ALENRHIDIIEMDAASSRG-----IDDIKKLIEQTKYRPSFGRYKI 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +ID V +++ A NALLK+LEEPP+ V FIL + + +TI SR +F + Sbjct: 106 FIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQI 161 >gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] Length = 602 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|195952583|ref|YP_002120873.1| DNA polymerase III delta' subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932195|gb|ACG56895.1| DNA polymerase III delta' subunit [Hydrogenobaculum sp. Y04AAS1] Length = 246 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR I F +L N +V +I M + A+NALLK+LEEPP + FI+ + + Sbjct: 75 IKIDDIREISNFANLKPNYSPNKVCLITNAQNMLKEASNALLKTLEEPPSYLKFIITADS 134 Query: 170 SPTILSTIRSRCLSIKF 186 I+ TI SR + ++ Sbjct: 135 LSNIIPTIVSRSIVLEL 151 >gi|315654562|ref|ZP_07907468.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii ATCC 51333] gi|315491026|gb|EFU80645.1| DNA-directed DNA polymerase III subunit delta' [Mobiluncus curtisii ATCC 51333] Length = 438 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 42/59 (71%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G W +I+I+ D M+ ++N LLKS+EEPP++ +++L + ++ +LSTIRSR ++ + Sbjct: 148 GEWNIIIIEDYDRMSEYSSNLLLKSIEEPPERTVWVLCAPSAADVLSTIRSRTRLVQLS 206 >gi|218296229|ref|ZP_03496985.1| DNA polymerase III delta prime subunit [Thermus aquaticus Y51MC23] gi|218243301|gb|EED09831.1| DNA polymerase III delta prime subunit [Thermus aquaticus Y51MC23] Length = 269 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 34/199 (17%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P + + GHE I + L + + LLF G +G+G+ + YA + N F Sbjct: 2 ALRPPHPWGIIGHEAILELLPRLKAA-----TLLFSGPEGVGRRLVARWYALGL--NRGF 54 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWR--TVITVDEIRRI-RYF 121 PF++ A D L + PK R + ++E+ + +F Sbjct: 55 P------------PPFLE-----AHPDLL----EIGPKERGLRGEAEVRLEEVEPLFDWF 93 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S ++V ++D + AANA LK LEEPP ILI+ + T+L T++SR Sbjct: 94 QSHPRER--FKVAILDAAHLLTEAAANAFLKLLEEPPSYGRIILIAPSGETLLPTLKSRA 151 Query: 182 LSIKFNSLSENNLYKALEQ 200 L + F + E L +AL Q Sbjct: 152 LEVAFGPVPEEKL-RALTQ 169 >gi|300933736|ref|ZP_07148992.1| DNA polymerase III subunit delta' [Corynebacterium resistens DSM 45100] Length = 398 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 23/245 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + H+ LF G G G+ ++ + L P+ C + Q +H D Sbjct: 30 LTHSWLFTGPPGSGR-SIAAKAFAAALVCPNNGCGQCEQCR-------MVQAGTHP--DV 79 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 +++S G W I D++R + + G RVI+++ D +N +N+LLK Sbjct: 80 VWVSTD-----GVW---IHADKVREVISDAAKLPTVGRRRVIVVEQADRLNAAGSNSLLK 131 Query: 153 SLEEPPQKVLFILISHAS-PTILS-TIRSRCLSIKFNSLSENNLYKA-LEQLKIMGWDSK 209 S+EEPP F+L + ++ P+ +S T+RSRC + + S + L + + + Sbjct: 132 SVEEPPASTYFVLCAPSTDPSDISITLRSRCRHVYIPTPSPEAVAGVLLSDAALALTEEQ 191 Query: 210 RDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI 269 + + G + RA + L D +K + + +P+ Y K+ + EL+++ Q+ Sbjct: 192 AQWAAGVSGGHIGRA-RHLARD-EKARAKRAAALKVPQLVYEPAKLYRYVGELVAKAQEE 249 Query: 270 AFDFL 274 A L Sbjct: 250 AESLL 254 >gi|255529991|ref|YP_003090363.1| DNA polymerase III gamma/tau subunit [Pedobacter heparinus DSM 2366] gi|255342975|gb|ACU02301.1| DNA polymerase III gamma/tau subunit [Pedobacter heparinus DSM 2366] Length = 382 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 45/223 (20%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G E++++ L Q R+ HA LF G G L YA ++ + Sbjct: 4 KEITGQENVKQQLLQTVAENRISHAQLFLSCDGSGALPLAIAYAQYINCLDKQENDSCGL 63 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSY----SLNPKTG-----KWRTVITVD--------- 113 C+ C + + +H L+ SY S + KT +WR+++ D Sbjct: 64 CS--SCRKYERY-----IHPDLHFSYPFFASKDVKTAVDVLEEWRSMLLADAYFDIDIWR 116 Query: 114 ---------------EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 E I LS A + +V+++ + +++ NALLK +EEPP Sbjct: 117 SKLNAENKQANINIAECHDIIKKLSYKAFEAHTKVLIMWLPEYLDKE-GNALLKIIEEPP 175 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLS----ENNLYKA 197 Q LFIL+++ ILST+ SR +K LS EN L +A Sbjct: 176 QNTLFILVANNQEQILSTLLSRTQIVKIPKLSHATVENYLMEA 218 >gi|311112888|ref|YP_003984110.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC 17931] gi|310944382|gb|ADP40676.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC 17931] Length = 957 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + G E + + L + R++HA LF G +G GK T A + Q Sbjct: 7 RRYRPETFAEVIGQEHVTEPLITALTNNRVNHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C D C ++++ + G VD R +R Sbjct: 67 P--TPTPCGVC--DSC----RELSRDGGGSLDVIEMDAASHGG-------VDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ + FI + +L TIRSR Sbjct: 112 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE+L Sbjct: 172 HHYPFRLVPPEVLLPYLEKL 191 >gi|290510809|ref|ZP_06550179.1| DNA polymerase III subunit delta [Klebsiella sp. 1_1_55] gi|289777525|gb|EFD85523.1| DNA polymerase III subunit delta [Klebsiella sp. 1_1_55] Length = 334 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLSGMGGEALIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y L P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YPLIPEKGK--SALGIDAVRDVNEKLYERARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACQEPARLLTTLRSRC 159 >gi|311070678|ref|YP_003975601.1| DNA polymerase III subunit delta' [Bacillus atrophaeus 1942] gi|310871195|gb|ADP34670.1| DNA polymerase III subunit delta' [Bacillus atrophaeus 1942] Length = 329 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 15/158 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ HA LFEG +G GK A D ++ P C K++ S D Sbjct: 27 RLSHAYLFEGRKGTGKLDAALLLAKSFFCLEDGAE-PCENCRN------CKRIESGNHPD 79 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + ++P I +I+ ++ S T + ++ +I D M NAAN+LL Sbjct: 80 L----HVVHPDG----LSIKKAQIQALQEEFSKTGLESHKKLYIISHADKMTANAANSLL 131 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 K LEEP + + +L++ +L TI SRC ++ F L Sbjct: 132 KFLEEPNKDTMAVLMTEQPQKLLDTIISRCQTLAFQPL 169 >gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] Length = 610 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 30/211 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L + +GR+ A + G +G+GK T +L Sbjct: 23 VLARKYRPSTFEDLVGQEPMVQTLENAFETGRIAQAWMLTGVRGVGKTT-----TARILA 77 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWRTVI 110 + P + P Q+ H D + + + + G R +I Sbjct: 78 RGLNYEVPGEVDRP------TVQLTQEGTHCRAIMGGRHVDVIEMDAASHTGIGDIREII 131 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 R T ++V +ID V ++ A N LLK+LEEPP+ V FI + Sbjct: 132 DASRYR---------PATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEI 182 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + T+ SRC + + L L ++ Sbjct: 183 RKVPITVLSRCQRFDLRRIDQAKLVGLLRRI 213 >gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] Length = 626 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 32 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPT 91 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 92 IDLRVPGEHC----------QAIMDGRHVDVIEMDAASH--TG-------IDDIREIIEQ 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 133 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 192 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 193 QRFDLRRISASDL 205 >gi|283768644|ref|ZP_06341556.1| DNA polymerase III, subunit gamma and tau [Bulleidia extructa W1219] gi|283105036|gb|EFC06408.1| DNA polymerase III, subunit gamma and tau [Bulleidia extructa W1219] Length = 547 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G + I + + ++ HA LF G +G GK T+ R + D + P C Sbjct: 17 EVIGQDYIVQAIQNTVNQNKVGHAYLFCGPRGTGKTTMA-RLLAKAINCEDSKEKPCNHC 75 Query: 73 NPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C ++A+ +H D + ++ + +VD IR + L G + Sbjct: 76 VS--C-----ELANKGIHPDIIEINAA---------NETSVDHIRDLIDKAYLAPMQGIY 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V ++D V ++ A++ALLK LEEPP+ V+FIL + +L TI SRC F Sbjct: 120 KVYIMDEVHQLSSAASSALLKILEEPPENVIFILATTDPQKMLPTIISRCQRFDF 174 >gi|54020353|ref|YP_115637.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae 232] gi|53987526|gb|AAV27727.1| DNA polymerase III gamma-tau subunits [Mycoplasma hyopneumoniae 232] Length = 726 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 17 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 71 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 72 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 115 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 116 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 175 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ KI + V + + GS+ AI IL Sbjct: 176 VQRYNFLALKEDEICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILE 228 >gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] Length = 626 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 32 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPT 91 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 92 IDLRVPGEHC----------QAIMDGRHVDVIEMDAASH--TG-------IDDIREIIEQ 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 133 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 192 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 193 QRFDLRRISASDL 205 >gi|206578898|ref|YP_002239282.1| DNA polymerase III, delta' subunit [Klebsiella pneumoniae 342] gi|206567956|gb|ACI09732.1| DNA polymerase III, delta' subunit [Klebsiella pneumoniae 342] Length = 334 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMAS 86 Y +GR HHALL + G+G L + ++ + P+ K+ C+ S + Q + Sbjct: 18 YQAGRGHHALLLQSLSGMGGEVLIYALCRFLMCRQPEGHKS-CGHCH----SCQLMQAGT 72 Query: 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H D+ Y L P+ GK + + +D +R + L A G +V+ I + A Sbjct: 73 HP--DY----YPLIPEKGK--SALGIDAVRDVNEKLYERARLGGAKVVWISDAALLTDAA 124 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ANALLK+LEEPP+ F L +L+T+RSRC Sbjct: 125 ANALLKTLEEPPENTWFFLACQEPARLLTTLRSRC 159 >gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium tumefaciens str. C58] gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str. C58] Length = 624 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 30 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTDTIDKPT 89 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 90 IDLRIPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDIREIIEQ 130 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 131 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 190 Query: 182 LSIKFNSLSENNL 194 +S +L Sbjct: 191 QRFDLRRISAADL 203 >gi|296141545|ref|YP_003648788.1| DNA polymerase III subunit delta' [Tsukamurella paurometabola DSM 20162] gi|296029679|gb|ADG80449.1| DNA polymerase III, delta prime subunit [Tsukamurella paurometabola DSM 20162] Length = 406 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V ++R + S + G+W++++I+ D + A NALLK +EEPP + + +L Sbjct: 105 IAVKQMREVVADASRRPSVGHWQIVLIEDADRLTEQAGNALLKMVEEPPAQTIVLLC--- 161 Query: 170 SPT-----ILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVAR 223 +PT I T++SRC + + S + LE+ G D++R + G V R Sbjct: 162 APTVDPEDISVTLKSRCRHVPLVTPSAPAIAAVLER---DGIDAERAAWAAGVCGGHVGR 218 Query: 224 AIKI 227 A ++ Sbjct: 219 AKRL 222 >gi|296130956|ref|YP_003638206.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena DSM 20109] gi|296022771|gb|ADG76007.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena DSM 20109] Length = 878 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L Q SG+ +HA LF G +G GK T R L + Sbjct: 7 RRYRPESFAEVIGQDHVTAPLRQALRSGQANHAYLFSGPRGCGK-TTSARILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P PC P ++A + G VD+ R +R Sbjct: 63 CAEGPTDT----PCGVCPSCVELARGGAGSLDVVEIDAASHGG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D ++ NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 ATFAPARDRYKVFILDEAHMVSPQGFNALLKIVEEPPPHVKFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + L LEQL Sbjct: 172 HHYPFRLVPPDVLVPYLEQL 191 >gi|281356871|ref|ZP_06243361.1| DNA polymerase III gamma/tau subunits-like protein [Victivallis vadensis ATCC BAA-548] gi|281316429|gb|EFB00453.1| DNA polymerase III gamma/tau subunits-like protein [Victivallis vadensis ATCC BAA-548] Length = 353 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 114 EIRRIRYF---LSLTANTGYWR-VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 E +RYF LT+ G R V +I D MN + NALLK+LEEPP + L IL + Sbjct: 101 EPNTLRYFEEQFHLTSTGGANRKVGVIYDADRMNDESQNALLKTLEEPPPETLLILTTGN 160 Query: 170 SPTILSTIRSRCLSIKF 186 ++L T RSRC I Sbjct: 161 PASLLPTTRSRCQQISL 177 >gi|153951826|ref|YP_001397740.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. doylei 269.97] gi|152939272|gb|ABS44013.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. doylei 269.97] Length = 509 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 35/235 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L G + + L R+ HA LF G +G GK + ++ ++ S Sbjct: 9 YRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLS 123 P C + + GK +I +D R + + Sbjct: 69 DTPCGTC-----------------------KHCIAALEGKHIDIIEMDAASNRGLEDIQA 105 Query: 124 LTANTGY------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L T Y +++ +ID V + AANALLK+LEEPP V FIL + + +T+ Sbjct: 106 LIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATV 165 Query: 178 RSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SR +F + + N+L + L + + + F+ + GS+ + +L Sbjct: 166 LSRTQHFRFKQIPQSEILNHLKEILHKENVKFEEEALKFIARSGNGSLRDTLTLL 220 >gi|144227535|gb|AAZ44339.2| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae J] Length = 717 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 12 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 67 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 110 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 111 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 170 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ KI + V + + GS+ AI IL Sbjct: 171 VQRYNFLALKEDEICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILE 223 >gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti 1021] gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium meliloti 1021] Length = 626 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 32 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPT 91 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 92 IDLRVPGEHC----------QAIMDGRHVDVIEMDAASH--TG-------IDDIREIIEQ 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 133 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 192 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 193 QRFDLRRISASDL 205 >gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella schoenbuchensis R1] Length = 642 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 21/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTA-RILARALN 70 Query: 60 -QNPDFSKAPVRMCN-PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + D + + + + C+ ++ H D + + + TG +D+IR Sbjct: 71 YKTKDIDQPTIALNTLGEHCAQIIE--GRHI--DVIEMDAA--SHTG-------IDDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + +++ +ID + ++ A N LLK+LEEPP + FI + + TI Sbjct: 118 IIEQIRYRPVSARYKIYIIDEIHMLSTQAFNGLLKTLEEPPPHIKFIFATTEIRKVPITI 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC + L + L ++ KI D + AA GS A+ I Sbjct: 178 LSRCQRFDLRRIESAVLVEYLRKIAKHEKIKVEDQALSLIVRAAEGSARDALSI 231 >gi|15639989|ref|NP_219442.1| DNA polymerase III subunits gamma and tau [Treponema pallidum subsp. pallidum str. Nichols] gi|189026228|ref|YP_001934000.1| DNA polymerase III subunits gamma and tau [Treponema pallidum subsp. pallidum SS14] gi|3323329|gb|AAC65953.1| DNA polymerase III, subunits gamma and tau (dnaH) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018803|gb|ACD71421.1| DNA polymerase III, subunits gamma and tau [Treponema pallidum subsp. pallidum SS14] gi|291060362|gb|ADD73097.1| DNA polymerase III subunits gamma and tau [Treponema pallidum subsp. pallidum str. Chicago] Length = 572 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 19/191 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G + + L + ++ A LF G G GK + R L Sbjct: 10 YRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCA-RILAKALNC---- 64 Query: 66 KAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V+ +PC P +++A+ + + + + + G ++R+I+ + Sbjct: 65 ---VQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVG---------DVRQIKEEIL 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK++EEPP V+FI + I +T++SRC Sbjct: 113 FPPHGTRYKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQ 172 Query: 184 IKFNSLSENNL 194 F + L Sbjct: 173 FHFRLVDTQTL 183 >gi|254527212|ref|ZP_05139264.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9202] gi|221538636|gb|EEE41089.1| DNA polymerase III, delta prime subunit [Prochlorococcus marinus str. MIT 9202] Length = 320 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/307 (23%), Positives = 132/307 (42%), Gaps = 42/307 (13%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 N LF +E+I +L + + + +F G +G+GK ++ + + Sbjct: 7 NNFLF-NEEINSYLKKIIKNKSFANGYIFYGAEGVGKKQTALQFIKEIFKQSS------- 58 Query: 71 MCNPDPCSPFVKQMASHALHDFLYL------------SYSLNPKTGKWRTVITVDEIRRI 118 P +++ ++ DFL + S L +I + +IR I Sbjct: 59 -----PSDNVEEKITNNNHPDFLIIKPDSLLATKKSKSSDLEKTIKSGSEIIKIAQIRNI 113 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + FL + ++++I +N A+N LLK++EEP + FIL++ +L TI Sbjct: 114 KTFLGQKSINSGKKIVLIVDAHLLNEAASNCLLKTIEEPSNGI-FILLTSKLNLLLDTII 172 Query: 179 SRCLSIKFNSLSENNLYKALE------QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 SRC ++F S S + E +LKI D + +A GS + +K + Sbjct: 173 SRCQIVRFRSFSSKQIKSIFEDYLNTSKLKINTKLKFEDLIN-SANGSPNQLLKNIE--- 228 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIAD--ELLSQDQKIAFD-FLIEFILKEICKSAKAA 289 I + Y D I I + +Y L+ +I + +L+S++ +I FL+ FI + K Sbjct: 229 --IWNDYSDEI-INKLDYPLKNSLEILEICKLISEELEIYQQIFLVNFIQTIWWRKLKNI 285 Query: 290 ALSGQLE 296 L +LE Sbjct: 286 RLVKKLE 292 >gi|170749547|ref|YP_001755807.1| DNA polymerase III, subunits gamma and tau [Methylobacterium radiotolerans JCM 2831] gi|170656069|gb|ACB25124.1| DNA polymerase III, subunits gamma and tau [Methylobacterium radiotolerans JCM 2831] Length = 637 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 45/248 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + + L+ + + R+ A + G +G+GK T G Y Sbjct: 29 VLARKYRPTNFGDLIGQDAMVRTLANGFAANRIPQAWMLTGVRGVGKTTTARILARGLNY 88 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTG 104 A R PD P V M LH D L + + + TG Sbjct: 89 A--------------RAGQPD-TGPTV-SMPELGLHCAAIMESRHMDVLEMDAASH--TG 130 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 +D++R I + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 131 -------IDDVRAIIDGIRYGPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFV 183 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGS 220 + + TI SRC + L+ L ++ ++ D + AA GS Sbjct: 184 FATTEIRKVPVTILSRCQRFDLRRVEAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGS 243 Query: 221 VARAIKIL 228 V A+ +L Sbjct: 244 VRDALSLL 251 >gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] Length = 597 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 27/235 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L+ + +GR+ A + G +G+GK T Y Sbjct: 17 RKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALNYKTA 76 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P A + + C ++ H D + + + + R D I R Sbjct: 77 TVDQPSVDLAVL----GEHCQAIME--GRHV--DVIEMDAASHTGIDDIR-----DIIER 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +RY + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ Sbjct: 124 VRY----APVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITV 179 Query: 178 RSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC + L L + I D + AA GS ++ IL Sbjct: 180 LSRCQRFDLRRIDAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSIL 234 >gi|187933489|ref|YP_001887621.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B str. Eklund 17B] gi|187721642|gb|ACD22863.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B str. Eklund 17B] Length = 546 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 8 REWRPRTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKAL----- 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + +PC+ K++ D L + N G R +D+ + Sbjct: 63 ---NCFNIQDGEPCNECEMCKKINEGLSMDVTELDAASN--NGIDRIRDIIDDTK----- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 113 --YPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F +++ + L K E + + D + A G++ ++ IL Sbjct: 171 QRFDFKRINQKDISDRLRKITESQNVSVDEKSLDLIARVADGAMRDSLSIL 221 >gi|296111510|ref|YP_003621892.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc kimchii IMSNU 11154] gi|295833042|gb|ADG40923.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc kimchii IMSNU 11154] Length = 594 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 40/245 (16%) Query: 9 VYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 VY R F G + I + L + + HA LF G +G GK + +A + Sbjct: 9 VYRPRTFDDMVGQDVITQTLKNAIETHQTGHAYLFSGPRGTGKTSAAKIFAREI------ 62 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + + + + D + + N + V+++R I + Sbjct: 63 -------------NGIAPETSDAQIPDIVEFDAASNSR---------VEDMRDILANVDY 100 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID V ++ +A NALLK+LEEPP V FIL + + TI SR Sbjct: 101 APIESEYKVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRF 160 Query: 185 KF----NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 +F N + + L L Q I D + A G + A+ IL D++I+ Sbjct: 161 EFKRIDNLVIQAQLADILHQQSIGYEDDALRIIANVAEGGMRDALSIL----DQVIAFGT 216 Query: 241 DLIHI 245 D + I Sbjct: 217 DKVTI 221 >gi|73667555|ref|YP_303571.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake] gi|72394696|gb|AAZ68973.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake] Length = 491 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 23/230 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + + L + ++ ++L G G+GK T R L N F Sbjct: 7 YRPSNFKDLIGQEVLVRVLHNAFHLDKIPESILLTGTSGVGKTTAA-RIISMCL-NCAFG 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 DPC+ ++ + D + + + N + ++ RY Sbjct: 65 PTS------DPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVIL-----ENSRYM-- 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 112 --PISSKFKVYIIDEVHMLSNSAFNALLKVLEEPAHYVKFILATTEVKKIPVTIISRCQR 169 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +S + L K L E+ I + + A GS+ A+ IL Sbjct: 170 FDFQKISTDKLIKHLKAISEKENITSDEESIKLIADNADGSIRNALSILE 219 >gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] Length = 640 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 16/204 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L+G E + + L + +GR+ A + G +G+GK T A G Sbjct: 47 VLARKYRPSTFDDLYGQEPMVQTLQNAFETGRIAQAWMLTGVRGVGKTTTARILARGLNY 106 Query: 60 QNP-DFSKAPVRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P + K + + P C ++ H D + + + + G R + E R Sbjct: 107 EIPGEIDKPTIHLDKPGVHCQAIME--GRHV--DVIEMDAASHTGIGDIREIT---EAAR 159 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 R AN Y +V +ID V ++ A N LLK+LEEPP+ V FI + + T+ Sbjct: 160 YR-----PANARY-KVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTV 213 Query: 178 RSRCLSIKFNSLSENNLYKALEQL 201 SRC + + L L ++ Sbjct: 214 LSRCQRFDLRRIESSTLVSLLREI 237 >gi|297625597|ref|YP_003687360.1| hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921362|emb|CBL55915.1| Hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1134 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 21/202 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P +++ G + + L + + R+ HA LF G +G GK T R L + Sbjct: 94 RRYRPDTFEQVIGQDHVTLPLQRAIANNRVSHAYLFSGPRGCGKTTCA-RILARCL---N 149 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P PC +++A+ D + + + + + VD+ R +R Sbjct: 150 CENGPT----PTPCGHCTSCRELATGGPGSIDVIEIDAASHGR---------VDDARELR 196 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID + + NALLK +EEPP V FI + ++ TIRS Sbjct: 197 EGIFFAPVQSRFKIYIIDEAHMVTKEGFNALLKVVEEPPPHVKFIFATTEPDKVIGTIRS 256 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 R F + L LE++ Sbjct: 257 RTHHYPFRLVPPKVLTDYLEKI 278 >gi|71893604|ref|YP_279050.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae J] Length = 715 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 10 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 65 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 108 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 109 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 168 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ KI + V + + GS+ AI IL Sbjct: 169 VQRYNFLALKEDEICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILE 221 >gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti MAFF303099] gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099] Length = 604 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 27/238 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T Y Sbjct: 21 VLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALNY 80 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + P A + + C ++ H D + + + + TG +D+ Sbjct: 81 KTATVDQPSVDLAVLG----EHCQAIME--GRHV--DVIEMDAASH--TG-------IDD 123 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 IR I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 124 IRDIIERVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVP 183 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKIL 228 T+ SRC + L L + S D + AA GS ++ IL Sbjct: 184 ITVLSRCQRFDLRRIDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSIL 241 >gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 605 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 29/239 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T R L Sbjct: 22 VLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTA-RILARALN 80 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH-------DFLYLSYSLNPKTGKWRTVITVD 113 + + D S + + H L D + + + + R D Sbjct: 81 --------YKTADIDQPSVDLAVLGEHCLAIMEGRHVDVIEMDAASHTGIDDIR-----D 127 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 I R+RY + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 128 IIERVRY----APVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKV 183 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD----FVKIAAYGSVARAIKIL 228 T+ SRC + L L + S D + AA GS ++ IL Sbjct: 184 PITVLSRCQRFDLRRIDAGALVGHLASISAKEGISVDDDALAMIARAAEGSARDSLSIL 242 >gi|196229725|ref|ZP_03128589.1| DNA polymerase III, subunits gamma and tau [Chthoniobacter flavus Ellin428] gi|196226051|gb|EDY20557.1| DNA polymerase III, subunits gamma and tau [Chthoniobacter flavus Ellin428] Length = 598 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 18/160 (11%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 L R+ A LF G +G GK + F A + + P + P +C+ Sbjct: 13 LKNAIAQNRLAQAYLFVGPRGTGKTSTARIFAKALNCVHAPTTN--PCGVCD------MC 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K++A+ + L + N + K R +I I ++Y G +++ ++D V Sbjct: 65 KEIAAGNSLNVLEFDAASNTQVDKIREII----IDNVKY----APTRGNYKLYIVDEVHM 116 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++ NALLK+LEEPP V F+ + + +TI SRC Sbjct: 117 LSNSSFNALLKTLEEPPPHVKFVFATTDVQKVPTTIISRC 156 >gi|115378514|ref|ZP_01465671.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] gi|115364483|gb|EAU63561.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] Length = 371 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 19/172 (11%) Query: 32 RMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ HA LF G +G+GK T A + Q P S P C C+ ++ S Sbjct: 3 RVAHAYLFCGPRGVGKTTAARLLAKALNCEQGPTAS--PCGTCRA--CT----EITSGTS 54 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + + N V+ +R IR ++ +ID V ++ A NA Sbjct: 55 VDVAEIDGASNNG---------VENVREIRENAKYLPQRDRHKIYIIDEVHMLSGAAFNA 105 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LLK+LEEPP V FI + + + TI SRC F + + + L+Q+ Sbjct: 106 LLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARMLQRLKQI 157 >gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] Length = 611 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 22 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC A + +TG V +IR I Sbjct: 82 IGEDGQGGPTT----EPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 131 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 190 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKIL 228 RC + E + AL Q KI G ++ + + AA GS A +L Sbjct: 191 RCQRFDLRRI-EPEVMIALLQ-KIAGAENAQIAEDALALITRAAEGSARDATSLL 243 >gi|85859639|ref|YP_461841.1| DNA polymerase III subunit gamma [Syntrophus aciditrophicus SB] gi|85722730|gb|ABC77673.1| DNA polymerase III, gamma subunit [Syntrophus aciditrophicus SB] Length = 329 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 16/214 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH L RM HA LF G G+GK TL +A + + + C Sbjct: 11 ILGHAKPIGILQNAIQHNRMAHAYLFHGMAGVGKLTLALNFAKAL----NCLQGASDAC- 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D C +K H H + + + G++ I +D ++ ++ + G RV Sbjct: 66 -DCCISCIK--TDHRNHPDIEMIEA----EGQY---IRIDAVKDLQERMKFKPMEGKKRV 115 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ D +N AANALLK+LEEP + IL++ + TI SRC I+FN L++ Sbjct: 116 AILVDADRLNNAAANALLKTLEEPSPANILILVTDRPYQLPITILSRCQQIRFNPLAQEI 175 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + L + + +++ + A+ GS+ +A+ + Sbjct: 176 VTTLLHE-RFSVENTQAGLLAAASGGSIGKALDL 208 >gi|116871563|ref|YP_848344.1| DNA polymerase III subunit delta' [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740441|emb|CAK19561.1| DNA polymerase III delta subunit domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 330 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L+ + A + N Sbjct: 16 KIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLERTETELACGKCAN------ 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 70 -CMRIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LS 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 QL G ++ + + GS+ +A Sbjct: 178 QLTAAGISEQKARIYASITGSIEQA 202 >gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42] gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42] Length = 624 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 + + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 30 FTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPT 89 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D++R I Sbjct: 90 IDLRTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDVREIIEQ 130 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 131 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 190 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 191 QRFDLRRISASDL 203 >gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] Length = 625 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 30 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTDTIDKPT 89 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 90 IDLRIPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDIREIIEQ 130 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 131 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 190 Query: 182 LSIKFNSLSENNL 194 +S +L Sbjct: 191 QRFDLRRISAADL 203 >gi|240047507|ref|YP_002960895.1| DNA polymerase III subunits gamma and tau [Mycoplasma conjunctivae HRC/581] gi|239985079|emb|CAT05072.1| DNA polymerase III gamma and tau subunit [Mycoplasma conjunctivae] Length = 665 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I + L S + HA LF G +G GK +L +A + Sbjct: 10 RKYRPQTFNDVVGQELIVQSLKNIITSQQYFHAYLFAGSRGTGKTSLAKIFANTL----- 64 Query: 64 FSKAPVRMCNPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR- 117 C PC + + + D + + + N V EIR Sbjct: 65 -------NCQHKRDLLIPCETCIANINNSL--DIIEIDAASNN---------GVKEIREL 106 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I +L N+ Y +V ++D + +A NA LK+LEEPP+ V+FIL + I TI Sbjct: 107 IENVANLPQNSPY-KVYIMDEAHMLTTSAFNAFLKTLEEPPKHVIFILATTEVHKIPLTI 165 Query: 178 RSRCLSIKFNSLSENNLYKALE---QLKIMGWD-SKRDFVKIAAYGSVARAIKILH 229 SR F + ++ K LE Q + + ++ + V + GS+ A+ IL Sbjct: 166 LSRLQRFNFVKVQIQDVIKRLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILE 221 >gi|291455830|ref|ZP_06595220.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM 20213] gi|291382758|gb|EFE90276.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM 20213] Length = 907 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + GR+ HA LF G +G GK + A V + Sbjct: 30 RRYRPDTFEGVIGQDQVTVPLMRALDEGRLTHAYLFSGPRGCGKTSSARILARCV----N 85 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 86 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 134 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 135 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 194 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 195 HHYPFRLVPQEVMGPYLETI 214 >gi|182418736|ref|ZP_02950009.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521] gi|237669676|ref|ZP_04529653.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377430|gb|EDT74986.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521] gi|237654750|gb|EEP52313.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str. BoNT E BL5262] Length = 555 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 23/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 8 REWRPKTFDDVVGQEHITTTLKNEIINDRIAHAYLFCGTRGTGKTSTAKVMAKAL----- 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + N +PC+ K++ D L + N G + +D+ + Sbjct: 63 ---NCLNLENGEPCNECEMCKKINEGLAIDVTELDAASN--NGIDKIRDIIDDTK----- 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 113 --YPPQEAKYKVYIMDEVHMLSVGAVNAFLKTLEEPPKNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F ++ L + E I D D + G++ A+ IL Sbjct: 171 QRFDFKRINHKEVSARLRRITEAQNIDCEDKSLDLIARVCDGAMRDALSIL 221 >gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1] gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1] Length = 600 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 31/248 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRY 54 ++ R + P +L G E + + L+ + +GR+ A + G +G+GK T Y Sbjct: 16 VLARKYRPRDFSQLIGQEPMVRTLTNAFAAGRIAQAWMLTGVRGVGKTTTARILARALNY 75 Query: 55 AGHVLQNPDFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 + P V + P + C ++ H D + + + + TG +D Sbjct: 76 RTEAVDRPS-----VDLSVPGEHCEAILE--GRHV--DVIEMDAASH--TG-------ID 117 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +IR I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 118 DIRDIIEQVRYAPVSARYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKV 177 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLK-IMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 TI SRC + + + L + + G D+ D A +ARA + D Sbjct: 178 PITILSRCQRFDLRRIDSGLIKQHLAHIGDLEGVDADSD-----ALAMIARAAEGSMRDA 232 Query: 233 DKIISSYI 240 I I Sbjct: 233 QSIFDQAI 240 >gi|296506521|ref|YP_003667755.1| DNA polymerase III subunit delta' [Bacillus thuringiensis BMB171] gi|296327108|gb|ADH10035.1| DNA polymerase III, delta prime subunit [Bacillus thuringiensis BMB171] Length = 337 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 15/165 (9%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 L + ++ HA LF GE G K + + + + P C C Sbjct: 21 ILKNGLVNNKVSHAYLFNGEAGTLKKETALLFIKSLFCLENSERIPCNDCRN--CDRI-- 76 Query: 83 QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 ++ +H D + +S P+ G I ++I+++ +S T+ ++ +ID V+ Sbjct: 77 ---NNNIHPDVVIIS----PEEG---GSIKKEQIQQLHKEISFTSTELSRKIYLIDRVEM 126 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +AAN+LLK LEEP IL++ +L TI+SRC + F Sbjct: 127 LTTSAANSLLKFLEEPDGNTTAILVTENIQRVLGTIQSRCQILNF 171 >gi|71986063|ref|NP_498750.2| hypothetical protein F44B9.8 [Caenorhabditis elegans] gi|55584161|sp|P34429|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName: Full=Activator 1 subunit 5 gi|52839833|gb|AAK95878.2|L23648_8 Hypothetical protein F44B9.8 [Caenorhabditis elegans] Length = 368 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 41/235 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE I K L+++ + + H LLF G G GK T A Sbjct: 35 YRPSKLDELVAHEQIVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAA---------- 83 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG---KWRTVITVDEIRRIRYFL 122 +QM S + L + + + G T++ + + ++ F Sbjct: 84 ----------------RQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAF- 126 Query: 123 SLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S ++NTG ++++++D D M ++A NAL + +E+ V F +I + +I+ I+SR Sbjct: 127 STSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSR 186 Query: 181 CLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 C +F L + + L EQLK M D K D + I + G + I L Sbjct: 187 CTRFRFAPLDQKLIVPRLEYIVETEQLK-MTPDGK-DALLIVSKGDMRTVINTLQ 239 >gi|296157860|ref|ZP_06840694.1| DNA polymerase III, delta prime subunit [Burkholderia sp. Ch1-1] gi|295892106|gb|EFG71890.1| DNA polymerase III, delta prime subunit [Burkholderia sp. Ch1-1] Length = 344 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 31/175 (17%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS------------ 78 G HALL G+ GIGK R+A H+ Q + N +PC Sbjct: 18 GHWPHALLLHGQAGIGK----LRFAQHLAQG---LLCEAQQANGEPCGACVACNWFAQGN 70 Query: 79 -PFVKQMASHALHDFLYLSYSLNPKTG--------KWRTV---ITVDEIRRIRYFLSLTA 126 P + + AL L+ + + K K RT I +++IR + F+ + + Sbjct: 71 HPDYRIIVPEALAAEAGLNNAADEKADKADADEGKKTRTPSKEIKIEQIRGLLDFVGVGS 130 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 131 HRGGARVVVLYPAEALNIAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 185 >gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] Length = 608 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 19 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 78 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC A + +TG V +IR I Sbjct: 79 IGEDGQGGPTT----EPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 127 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 128 DSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 187 Query: 180 RCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 RC + + L EQ +I D + AA GS A +L Sbjct: 188 RCQRFDLRRIEPEVMIDLLRRIATSEQAEIA--DDALALITRAAEGSARDATSLL 240 >gi|325679532|ref|ZP_08159112.1| hypothetical protein CUS_5849 [Ruminococcus albus 8] gi|324108819|gb|EGC03055.1| hypothetical protein CUS_5849 [Ruminococcus albus 8] Length = 323 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +++G++ + ++ +GR H+++ GE+G+GK T+ +Y L + S P C Sbjct: 2 KIYGNKALLAQTARMVSAGREPHSIIIHGEKGLGKKTMA-KYIAAQLMCEEHSGVPCGRC 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYW 131 C Q+ H L + S N K G + V++IR I + N G Sbjct: 61 RA--C-----QLIERGAHPDLIFAQS-NDK-GNY----LVEDIRDSIVGDAPVAPNEGDI 107 Query: 132 RVIMIDPVD---GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +V +I D + N LLK +EEPP IL + + L+TI SRC+S+ Sbjct: 108 KVYVIPDFDLSIQTSIQVQNILLKLIEEPPDHTALILTARSKEAFLTTIISRCVSLSVTP 167 Query: 189 LS 190 ++ Sbjct: 168 VT 169 >gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] Length = 745 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 17/188 (9%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVR 70 +L G + I + L+ R+ A LF G +G GK + A + L + + P Sbjct: 16 QLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSLNCLSSEVPTAQPCG 75 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C ++ +A D + + + N TG VD IR + Sbjct: 76 QC--DVCQAVIQGIA----LDVVEIDAASN--TG-------VDNIRELIERSQFAPVQCR 120 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ ++D V ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + Sbjct: 121 YKLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIP 180 Query: 191 ENNLYKAL 198 ++ K L Sbjct: 181 LPSMIKHL 188 >gi|319951222|ref|ZP_08025060.1| DNA polymerase III subunit delta' [Dietzia cinnamea P4] gi|319435121|gb|EFV90403.1| DNA polymerase III subunit delta' [Dietzia cinnamea P4] Length = 405 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 31/176 (17%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 RM HA LF G G G+ ++ LQ D PD V A H Sbjct: 40 RMVHAWLFTGPPGSGR-SVAAMAFAAALQCED----------PD----VVGCGRCRACHT 84 Query: 92 FLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 L +++ L P+ I + +++ + + TG W++++++ D + + Sbjct: 85 VLAGTHADVHLLAPQG----VNILLKDVKETIHRAASRPGTGRWQIVVVEEADRLTEQSG 140 Query: 148 NALLKSLEEPPQKVLFILISHASPT-----ILSTIRSRCLSIKFNSLSENNLYKAL 198 NALLK +EEPP + +F+L SPT I+ T+RSR ++ + + + +AL Sbjct: 141 NALLKVVEEPPSRTVFLLC---SPTTDPMDIMVTLRSRSRNVALHQPNAEAVERAL 193 >gi|91176622|gb|ABE26698.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila] Length = 274 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 8/131 (6%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + G +++ +ID V +++++ NALLK+LEEPP V FIL + Sbjct: 3 VEDTRDLLDNIQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQ 62 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKI 227 + T+ SRCL L + + L+ Q + + ++ + D + AA GS+ A+ + Sbjct: 63 KLPVTVLSRCLQFNLKHLPAELINQQLQLILQEECLDFEIQALDILAQAARGSMRDALSL 122 Query: 228 LHYDCDKIISS 238 L D+ I+S Sbjct: 123 L----DQAITS 129 >gi|91783553|ref|YP_558759.1| DNA polymerase III subunit delta' [Burkholderia xenovorans LB400] gi|91687507|gb|ABE30707.1| DNA polymerase III, delta prime subunit [Burkholderia xenovorans LB400] Length = 344 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 31/175 (17%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS------------ 78 G HALL G+ GIGK R+A H+ Q + N +PC Sbjct: 18 GHWPHALLLHGQAGIGK----LRFAQHLAQG---LLCEAQQANGEPCGACVACNWFAQGN 70 Query: 79 -PFVKQMASHALHDFLYLSYSLNPKTG--------KWRTV---ITVDEIRRIRYFLSLTA 126 P + + AL L+ + + K K RT I +++IR + F+ + + Sbjct: 71 HPDYRIIVPEALAAEAGLNNAADEKADKADADEGKKTRTPSKEIKIEQIRGLLDFVGVGS 130 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 131 HRGGARVVVLYPAEALNIAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 185 >gi|260890472|ref|ZP_05901735.1| hypothetical protein GCWU000323_01642 [Leptotrichia hofstadii F0254] gi|260859714|gb|EEX74214.1| putative ATPases and helicase subunits involved in DNA replication [Leptotrichia hofstadii F0254] Length = 317 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DE+R I Y ++ ++ ++ ++ + + ++NALLK LEEPPQ V FIL+S Sbjct: 80 IKIDEVREIIYSSIESSFNSPKKIFILCGIENLRKESSNALLKILEEPPQNVYFILLSR- 138 Query: 170 SPTILSTIRSRCLSIKFNSLSENN 193 + I+STI+SR +IKF+ NN Sbjct: 139 TLNIISTIKSR--TIKFHLSGMNN 160 >gi|46906398|ref|YP_012787.1| DNA polymerase III subunit delta' [Listeria monocytogenes str. 4b F2365] gi|46879662|gb|AAT02964.1| DNA polymerase III, delta subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 330 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H LFEG +G GK A + L++ + + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLFEGARGTGKKRTALWLAQSLFCLESTETELTCGKCAN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 178 SLTAAGISEQKARIYASITGSVEEA 202 >gi|296447822|ref|ZP_06889735.1| DNA polymerase III, subunits gamma and tau [Methylosinus trichosporium OB3b] gi|296254681|gb|EFH01795.1| DNA polymerase III, subunits gamma and tau [Methylosinus trichosporium OB3b] Length = 601 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 29/242 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + R+H A L G +G+GK T +L Sbjct: 28 VLARKYRPSGFADLIGQEPMVRTLENAFQLNRIHQAYLLTGVRGVGKTT-----TARILA 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTGKWRTVI 110 + P P P + M + +H D L + + + TG Sbjct: 83 RAFNYELPAADGRPAVDRPTI-HMDALGVHCQAIIDSRHPDVLEMDAASH--TG------ 133 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +D+IR I +V ++D V +++ A N LLK+LEEPP+ V FI + Sbjct: 134 -IDDIREIIENARYRPVMARVKVYIVDEVHMLSKAAFNGLLKTLEEPPEHVKFIFATTEI 192 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK 226 + T+RSRC + L L ++ + D V AA GS A+ Sbjct: 193 DKVPVTVRSRCQRFDLRRIDAGLLAGHLRKICDLESVAIEDEALAMVARAAEGSARDALS 252 Query: 227 IL 228 +L Sbjct: 253 LL 254 >gi|256839305|ref|ZP_05544814.1| DNA polymerase III, delta' subunit [Parabacteroides sp. D13] gi|256738235|gb|EEU51560.1| DNA polymerase III, delta' subunit [Parabacteroides sp. D13] Length = 374 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 40/224 (17%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G E++++ L Q +G + HA LF + G G L YA ++ ++ Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCT---NRTD 57 Query: 69 VRMCNPDPCSPFVKQMASHALH-----------------DFL-----------------Y 94 C P ++A LH D+L + Sbjct: 58 TDACGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEW 117 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 L Y + G + +I E I + LSL +R++M+ + ++ AN LLK + Sbjct: 118 LDYI---EAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKII 174 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EEPP + + +++S IL TI+SR I + + + A+ Sbjct: 175 EEPPMRTVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNAM 218 >gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] Length = 596 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFKADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +PC A L +TG V ++R I Sbjct: 71 IGPDGQGGPTT----EPCGQCEHCTAIMEGRHVDVLEMDAASRTG-------VGDVREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 120 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RC 181 RC Sbjct: 180 RC 181 >gi|294787170|ref|ZP_06752423.1| DNA polymerase III, delta' subunit [Parascardovia denticolens F0305] gi|294484526|gb|EFG32161.1| DNA polymerase III, delta' subunit [Parascardovia denticolens F0305] Length = 396 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + I++D++R + T WR+++I+ VD M N LLK +EEP + +++L Sbjct: 98 KVTISIDQVRSLVTKSEQMPATAPWRILIIEDVDRMLERTTNVLLKEVEEPADRTIWLLC 157 Query: 167 SHASPTILSTIRSR 180 + +S +L TIRSR Sbjct: 158 APSSQDVLPTIRSR 171 >gi|239942529|ref|ZP_04694466.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus NRRL 15998] gi|291445990|ref|ZP_06585380.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus NRRL 15998] gi|291348937|gb|EFE75841.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus NRRL 15998] Length = 399 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 17/193 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNL 194 F + L Sbjct: 173 HHYPFRLVPPGTL 185 >gi|322390020|ref|ZP_08063558.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus parasanguinis ATCC 903] gi|321143274|gb|EFX38714.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus parasanguinis ATCC 903] Length = 297 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR + S + G +V ++ D M+ NAAN+LLK +EEP ++ L++ Sbjct: 86 IIKTDRIRSLVQDFSQSGFEGSRQVFIVQDADKMHTNAANSLLKVMEEPQSEIYLFLLTS 145 Query: 169 ASPTILSTIRSRCLSIKF 186 IL TIRSR + F Sbjct: 146 DENLILPTIRSRAQQVHF 163 >gi|237736153|ref|ZP_04566634.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817] gi|229421706|gb|EEO36753.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817] Length = 303 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + VDEIR + Y S ++ G ++ +I + M + A+NALLK +EEP + FIL+ + Sbjct: 85 LKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKEASNALLKLIEEPNKGSFFILL-NT 143 Query: 170 SPTILSTIRSRCLSIK 185 + IL TI+SR + +K Sbjct: 144 NLNILPTIKSRSILVK 159 >gi|257126801|ref|YP_003164915.1| ATPase and helicase subunits involved in DNA replication [Leptotrichia buccalis C-1013-b] gi|257050740|gb|ACV39924.1| ATPase and helicase subunits involved in DNA replication [Leptotrichia buccalis C-1013-b] Length = 317 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DE+R I Y ++ ++ ++ ++ + + ++NALLK LEEPPQ V FIL+S Sbjct: 80 IKIDEVREIIYSSIESSFNSPKKIFILCGIENLRKESSNALLKILEEPPQNVYFILLSR- 138 Query: 170 SPTILSTIRSRCLSIKFNSLSENN 193 + I+STI+SR +IKF+ NN Sbjct: 139 TLNIISTIKSR--TIKFHLSGMNN 160 >gi|255594497|ref|XP_002536102.1| conserved hypothetical protein [Ricinus communis] gi|223520859|gb|EEF26280.1| conserved hypothetical protein [Ricinus communis] Length = 282 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 32/45 (71%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 MN A+NALLK LEEPPQ+ F+L+SH +L TI SRC+ ++ Sbjct: 1 MNVAASNALLKLLEEPPQRTQFLLVSHQRQALLPTILSRCMQVEM 45 >gi|315227292|ref|ZP_07869079.1| DNA polymerase III subunit delta' [Parascardovia denticolens DSM 10105] gi|315119742|gb|EFT82875.1| DNA polymerase III subunit delta' [Parascardovia denticolens DSM 10105] Length = 398 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + I++D++R + T WR+++I+ VD M N LLK +EEP + +++L Sbjct: 100 KVTISIDQVRSLVTKSEQMPATAPWRILIIEDVDRMLERTTNVLLKEVEEPADRTIWLLC 159 Query: 167 SHASPTILSTIRSR 180 + +S +L TIRSR Sbjct: 160 APSSQDVLPTIRSR 173 >gi|323144742|ref|ZP_08079319.1| DNA polymerase III, delta' subunit domain protein [Succinatimonas hippei YIT 12066] gi|322415493|gb|EFY06250.1| DNA polymerase III, delta' subunit domain protein [Succinatimonas hippei YIT 12066] Length = 280 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 R + +D +R++ + +A G +V +I M AANA+LK+ EEPPQ L I+ Sbjct: 43 RKSVRIDSMRKLSSWSVESAGAGNKKVAVIADAHTMPEGAANAILKTFEEPPQNTLIIMT 102 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK-IMGWDSKRDFVKIAAYG-SVARA 224 + + ++L TI SR I L + +L+++L +K + +R + +A G A Sbjct: 103 ARSLESLLPTILSRAYKI---VLQKASLHESLNFIKRNCSAEDERAQIALALSGYKPYGA 159 Query: 225 IKILHYDCDKIIS----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 ++++ D D IS ID ++ E +Q D LLS D + L E + Sbjct: 160 LRLIRSDDDIKISHMLKELIDALNGQGNE------EQAIDSLLSLDPLTQGNILYELV 211 >gi|326772637|ref|ZP_08231921.1| DNA polymerase III, subunit gamma and tau [Actinomyces viscosus C505] gi|326637269|gb|EGE38171.1| DNA polymerase III, subunit gamma and tau [Actinomyces viscosus C505] Length = 365 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + L + R+ HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAYLFSGPRGCGKTT-SARILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++AP PC P + +A+ + G VD+ R +R Sbjct: 63 CAQAPTDT----PCGTCPSCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 AAFAPARDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + L L L Sbjct: 172 HHYPFRLVPPDVLEGYLAHL 191 >gi|289581577|ref|YP_003480043.1| Replication factor C [Natrialba magadii ATCC 43099] gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099] Length = 341 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 40/227 (17%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P Y + GHE+I L +Y + H L+F G G GK T A V + D+ + Sbjct: 37 PEYLDEIKGHENIVPRLQRYVEQDDLPH-LMFAGPAGTGKTTAAQAIAREVYDD-DWRE- 93 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTA 126 +FL L+ S + G +D +R RI+ F + Sbjct: 94 -----------------------NFLELNAS--DQRG-------IDVVRDRIKDFARASF 121 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 R+I +D D + +A +AL +++E+ FIL + S I+ I+SRC +F Sbjct: 122 GGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRF 181 Query: 187 NSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 L+E + + ++ I D D + AA G + +AI L Sbjct: 182 TQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQ 228 >gi|331700193|ref|YP_004336432.1| DNA polymerase III subunit delta' [Pseudonocardia dioxanivorans CB1190] gi|326954882|gb|AEA28579.1| DNA polymerase III, delta prime subunit [Pseudonocardia dioxanivorans CB1190] Length = 383 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 22/169 (13%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA-LHD 91 M HA LF G G G++T +A LQ P C +HA + + Sbjct: 27 MTHAWLFTGPPGSGRSTAARAFA-AALQCPQGGCGECNSCR-------TVLAGTHADVRE 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + S I+V E+RR+ + +TG ++++I D + AANALL Sbjct: 79 VVPEGLS-----------ISVAEMRRLVQLAARRPSTGRRQILIIQDADRLGERAANALL 127 Query: 152 KSLEEPPQKVLFILISHA--SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 K++EEP +F+L + + + TIRSRC + + S + + L Sbjct: 128 KAVEEPAPDTVFLLCAPSDHPEDVPITIRSRCRPVPLRTPSAEAIAEVL 176 >gi|308235276|ref|ZP_07666013.1| DNA polymerase III subunit delta' [Gardnerella vaginalis ATCC 14018] gi|311114156|ref|YP_003985377.1| hypothetical protein HMPREF0421_20270 [Gardnerella vaginalis ATCC 14019] gi|310945650|gb|ADP38354.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 395 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + +++DE+R + + WR+I+I+ V M N LLK +EEP + ++IL Sbjct: 100 KVTVSIDEVRELVSISEQMPSVAPWRIIIIEDVGRMLERTTNVLLKEIEEPAPRTIWILC 159 Query: 167 SHASPTILSTIRSR 180 + ++ +L TIRSR Sbjct: 160 AASAADVLPTIRSR 173 >gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM 2160] gi|83288436|sp|Q3ITJ2|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|76556967|emb|CAI48541.1| replication factor C small subunit I [Natronomonas pharaonis DSM 2160] Length = 325 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 46/224 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I + L QY + H LLF G G+GK T A V + D+ + Sbjct: 26 IVGHESITERLKQYIAQNDLPH-LLFAGPAGVGKTTAATAIAKEVYGD-DWRE------- 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 +FL L+ S +D +R RI+ F + R Sbjct: 77 -----------------NFLELNASDQRG---------IDVVRDRIKSFARASFGGYDHR 110 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + +A +AL +++E+ FIL + S I+ I+SRC +F+ L + Sbjct: 111 IIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDA 170 Query: 193 NLYKALEQLKIMG-------WDSKRDFVKIAAYGSVARAIKILH 229 + EQ++I+ D D + AA G + +AI L Sbjct: 171 AVD---EQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQ 211 >gi|261884117|ref|ZP_06008156.1| DNA polymerase III subunit delta' [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 202 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 16/193 (8%) Query: 149 ALLKSLEEPPQK------VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 LK L++PP + FI S A + + +R + L +AL Sbjct: 2 GFLKPLKKPPAARAFHPYLAFIGTSFADNPVRAAEENRS-----SRXDGKRLGRALSHRG 56 Query: 203 IMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIA 259 S D K+ + GSV +A+ +L + +I S +D I I + L K Q + Sbjct: 57 SKAGISAGDITKVLFKRSEGSVQKALLLLAHGGLEI-SDPVDQI-IAGSIFDLPKAQALG 114 Query: 260 DELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ + L++ YN Sbjct: 115 GILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARFWSDLIRETVEAETYN 174 Query: 320 LDRRQMIFHLLSK 332 LDRRQ + LL K Sbjct: 175 LDRRQSVVILLEK 187 >gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] Length = 640 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 16/204 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P + L G E + + L + +GR+ A + G +G+GK T A G Sbjct: 39 VLARKYRPKTFEDLVGQEPMVQTLENAFETGRIAQAWMLTGVRGVGKTTTARILARGLNY 98 Query: 60 QNPDFSKAP-VRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P + P V++ C ++ H D + + + + TG +++IR Sbjct: 99 EVPGVADRPTVKLTQEGTHCKAIME--GRHV--DVIEMDAASH--TG-------INDIRE 145 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ Sbjct: 146 IIDAARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITV 205 Query: 178 RSRCLSIKFNSLSENNLYKALEQL 201 SRC + ++ L L ++ Sbjct: 206 LSRCQRFDLRRIDQSKLIGLLRRI 229 >gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] Length = 625 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 36 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 95 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC A + +TG V +IR I Sbjct: 96 IGEDGQGGP----TTEPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 144 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 145 DSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 204 Query: 180 RC 181 RC Sbjct: 205 RC 206 >gi|116493217|ref|YP_804952.1| DNA polymerase III subunit delta' [Pediococcus pentosaceus ATCC 25745] gi|116103367|gb|ABJ68510.1| DNA polymerase III, delta prime subunit [Pediococcus pentosaceus ATCC 25745] Length = 338 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 14/201 (6%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 + NQ + +I K ++ S + HA L G GIGK + A + P Sbjct: 7 LTNQAVEKQPEIVKRFNEMIDSQHLSHAYLLTGAGGIGKKDVAQWVAMRLFCIDLQGSMP 66 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 C + C+ ++ S D + ++ I V+++R ++ S + Sbjct: 67 CGEC--EECT----RIMSGQHPDVVEIAPDGQS--------IKVEQVRFLKSEFSKSGVE 112 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V +I+ + M +AAN+LLK +EEP +V L++ +L TI SR I+ Sbjct: 113 GARKVFIIEQANKMTTSAANSLLKFIEEPSGEVTAFLLAENRSLMLPTIVSRTEIIELKP 172 Query: 189 LSENNLYKALEQLKIMGWDSK 209 L ++ L K L + I D++ Sbjct: 173 LPKDRLIKELTEQNIAETDAR 193 >gi|307128527|ref|YP_003880557.1| putative DNA polymerase III delta' subunit [Candidatus Sulcia muelleri CARI] gi|306482989|gb|ADM89859.1| putative DNA polymerase III delta' subunit [Candidatus Sulcia muelleri CARI] Length = 354 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 59/278 (21%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC--NPDPCSPFVKQMASH 87 ++ HAL F G +G G +A +L C N + C K++ Sbjct: 11 KNKIPHALFFLGPEGCGNLMTALNFAKKIL------------CKKNNNSCLLKFKKIQHP 58 Query: 88 ALHDFLYLSYSLNPKTG-------KWRTVIT-------VDEIRRIRYF------------ 121 LH FL+ PK G KWR +T D I+ I+ + Sbjct: 59 DLH-FLFPF----PKGGIYNNYLIKWRLFLTKQPYGDLSDWIKLIKSYYKQCFIHKEQIN 113 Query: 122 -----LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ + +++I++ + + ++N LLK LE PP+ + IL+ IL T Sbjct: 114 NLIKIINYKSYESEYKIIILWMPEQLTLYSSNKLLKILEFPPKNTILILVGVNDNLILPT 173 Query: 177 IRSRCLSIKFNSLSENNLYKALE-QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 ++SR I+FN S N + LE + I + SK ++ + G++ +A+KIL + I Sbjct: 174 LKSRVNIIRFNKYSFNYIKIYLEKKFYIDRYQSK--YIASKSEGNLNKALKIL----NNI 227 Query: 236 ISSYIDLIHIP--RQEYALQKMQQIADELLSQDQKIAF 271 Y+++ +P R + L+K I ++++ +I F Sbjct: 228 QEKYLEINFVPWIRNLFLLKKNFFILNKIIDFSNQIHF 265 >gi|297200751|ref|ZP_06918148.1| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus ATCC 29083] gi|297147718|gb|EDY56355.2| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus ATCC 29083] Length = 577 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 78 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 133 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 134 CEQGP----TPTPCGTCQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARELREK 182 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 183 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 242 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L + L ++ Sbjct: 243 HHYPFRLVPPGTLREYLGEV 262 >gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus gammatolerans EJ3] gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus gammatolerans EJ3] Length = 333 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 39/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I K L Y +G M H LLF G G GK + A + Sbjct: 30 IVGQEHIVKRLKHYAKTGSMPH-LLFAGPPGTGKTSAALALARELF-------------- 74 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-YWR 132 + H+FL L+ S R + + E +++ F G ++ Sbjct: 75 -----------GENWRHNFLELNAS------DERGINVIRE--KVKEFARTKPIGGASFK 115 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L++ Sbjct: 116 IIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDE 175 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ K + EQ + + + A G + RAI +L Sbjct: 176 DIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQ 216 >gi|54022248|ref|YP_116490.1| DNA polymerase III subunits gamma and tau [Nocardia farcinica IFM 10152] gi|54013756|dbj|BAD55126.1| putative DNA polymerase III gamma subunit [Nocardia farcinica IFM 10152] Length = 825 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + LS +GR++HA LF G +G GK T R L Q Sbjct: 5 RKYRPATFAEVVGQEHVTEPLSTALDTGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C S D + L + + VD+ R +R Sbjct: 64 GP--TSTPCGVC----ASCVALAPGGPGNLDVIELDAASH---------GGVDDTRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +RV ++D + NALLK +EEPP ++FI + +L TIRSR Sbjct: 109 RAFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPAHLIFIFATTEPDKVLPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F L + L ++ Sbjct: 169 THHYPFRLLPPATMRGLLGRI 189 >gi|300172666|ref|YP_003771831.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG 18811] gi|299887044|emb|CBL91012.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG 18811] Length = 585 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 40/245 (16%) Query: 9 VYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 VY R F G E I + L + + HA LF G +G GK + +A + Sbjct: 9 VYRPRTFDDMVGQEVITQTLRNAIETHQTGHAYLFSGPRGTGKTSAAKIFAREI------ 62 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 DP + + D + + N + V+++R I + Sbjct: 63 -------NGIDPTTD------DSQIPDIVEFDAASNSR---------VEDMRDILSNVDY 100 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID V ++ +A NALLK+LEEPP V FIL + + TI SR Sbjct: 101 APIEAEFKVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRF 160 Query: 185 KFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 +F + + L L + +I D + A G + A+ IL D++I+ Sbjct: 161 EFKRIDSLIIKARLVDVLNKQQIAYEDDALRIIANVAEGGMRDALSIL----DQVIAFGT 216 Query: 241 DLIHI 245 D + + Sbjct: 217 DNVTV 221 >gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium nodulans ORS 2060] gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium nodulans ORS 2060] Length = 605 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 41/217 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P + L G + + L+ + +GR+ A + G +G+GK T G Y Sbjct: 33 VLARKYRPKDFEDLIGQGAMVRTLANAFEAGRIPQAWMLTGVRGVGKTTTARILARGLNY 92 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH----------DFLYLSYSLNPKTG 104 A PD DP + +M + LH D L + + + TG Sbjct: 93 A-----LPD-----------DPQAGPTIRMPALGLHCAAIMESRHIDVLEMDAASH--TG 134 Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 +D++R+I + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 135 -------IDDVRQIIDGIRYAPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFV 187 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + + TI SRC + L L+++ Sbjct: 188 FATTEIRKVPVTILSRCQRFDLRRVEAGTLIAHLQKI 224 >gi|325066589|ref|ZP_08125262.1| DNA polymerase III, subunits gamma and tau [Actinomyces oris K20] Length = 352 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + L + R+ HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAYLFSGPRGCGKTT-SARILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++AP PC P + +A+ + G VD+ R +R Sbjct: 63 CAQAPTDT----PCGTCPSCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 AAFAPARDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + L L L Sbjct: 172 HHYPFRLVPPDVLEGYLAHL 191 >gi|312277895|gb|ADQ62552.1| DNA polymerase III, delta prime subunit [Streptococcus thermophilus ND03] Length = 291 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 16/156 (10%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 SQ R+ HA LF G+ G + + L D P C P + + Sbjct: 15 SQIIRENRLSHAYLFSGDFGSLDMAIWLAQSRFCLTPED--GLPCSHCRP------CRLI 66 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 A D L G+ +I D IR++ S ++ G+ +V +I D M+ Sbjct: 67 AQGDFSD-----VKLVEPQGQ---IIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKMHV 118 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 NAAN+LLK +EEP ++ L++ IL TI+SR Sbjct: 119 NAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSR 154 >gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM 12940] gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940] Length = 326 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 38/196 (19%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + + GHE I + L Y + H +LF G G+GK T A L D+ + Sbjct: 21 PQTLEDIAGHEAIVERLGSYVSRNDLSH-MLFAGPAGVGKTTAATAIA-RELYGEDWEE- 77 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTA 126 +FL L+ S + G +D +R R++ F + T+ Sbjct: 78 -----------------------NFLELNAS--DERG-------IDVVRDRVKSF-ARTS 104 Query: 127 NTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 GY +R+I +D D + +A +AL +++E+ V FIL + S I+ I+SRC + Sbjct: 105 FGGYDYRIIFLDEADALTADAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFR 164 Query: 186 FNSLSENNLYKALEQL 201 F+ L++ + + Q+ Sbjct: 165 FSPLADEAVEAQIRQI 180 >gi|328883870|emb|CCA57109.1| DNA polymerase III subunits gamma and tau [Streptomyces venezuelae ATCC 10712] Length = 795 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 83 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 138 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 139 CEQGP----TPTPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 187 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 188 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 247 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L L ++ I D V A GSV ++ ++ Sbjct: 248 HHYPFRLVPPGTLRDYLGEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVM 298 >gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC 25840] gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A [Brucella ovis ATCC 25840] Length = 602 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFDDLIGQEPMVRTLRNAFERGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 75 TVDQPTIDLSTPGEHC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 116 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 T+ SRC + L + L ++ KI D+ + A GS ++ I Sbjct: 176 TVLSRCQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSI 231 >gi|144575348|gb|AAZ53630.2| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae 7448] Length = 721 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 12 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 67 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 110 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 111 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 170 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ +I + V + + GS+ AI IL Sbjct: 171 VQRYNFLALKEDEICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILE 223 >gi|55820573|ref|YP_139015.1| DNA polymerase III subunit delta' [Streptococcus thermophilus LMG 18311] gi|116627382|ref|YP_820001.1| DNA polymerase III subunit delta' [Streptococcus thermophilus LMD-9] gi|55736558|gb|AAV60200.1| DNA polymerase III delta prime subunit [Streptococcus thermophilus LMG 18311] gi|116100659|gb|ABJ65805.1| DNA polymerase III, delta prime subunit [Streptococcus thermophilus LMD-9] Length = 291 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 16/156 (10%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 SQ R+ HA LF G+ G + + L D P C P + + Sbjct: 15 SQIIRENRLSHAYLFSGDFGSLDMAIWLAQSRFCLTPED--GLPCSHCRP------CRLI 66 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 A D L G+ +I D IR++ S ++ G+ +V +I D M+ Sbjct: 67 AQGDFSD-----VKLVEPQGQ---IIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKMHV 118 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 NAAN+LLK +EEP ++ L++ IL TI+SR Sbjct: 119 NAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSR 154 >gi|223040830|ref|ZP_03611096.1| DNA polymerase III subunit gamma/tau [Campylobacter rectus RM3267] gi|222877929|gb|EEF13044.1| DNA polymerase III subunit gamma/tau [Campylobacter rectus RM3267] Length = 906 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 L G E + L+ R+ HA LF G +G GK T R FSKA V C Sbjct: 16 ELVGQEAVSTSLTHALDESRLTHAYLFSGLRGSGK-TSSARI---------FSKALV--C 63 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLSLTANTGY 130 + P S +Q A+ + G+ +I +D R I L T Y Sbjct: 64 DHGPTSRPCEQCAN-----------CIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKY 112 Query: 131 ------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++ +ID V ++ A NALLK+LEEPP V FIL + + +T+ SR Sbjct: 113 APAIARFKIFIIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHF 172 Query: 185 KFNSLS 190 +F +S Sbjct: 173 RFRQIS 178 >gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] Length = 605 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 27/234 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L+ + +GR+ A + G +G+GK T Y Sbjct: 15 RKYRPQNFNDLIGQEPMVRTLNNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 74 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P + + C ++ H D + + + + TG +D+IR Sbjct: 75 TIDQPTIDLS----VQGENCQAIME--GRHV--DVIEMDAASH--TG-------IDDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ Sbjct: 118 IIEQVRYRPVSARYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 SRC + L + L ++ +I D+ + A GS ++ I Sbjct: 178 LSRCQRFDLRRIESGTLAQHLRRIAEAEQIAVDDTSLAMIARAGEGSARDSLSI 231 >gi|55822463|ref|YP_140904.1| DNA polymerase III subunit delta' [Streptococcus thermophilus CNRZ1066] gi|55738448|gb|AAV62089.1| DNA polymerase III delta prime subunit [Streptococcus thermophilus CNRZ1066] Length = 291 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 16/156 (10%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 SQ R+ HA LF G+ G + + L D P C P + + Sbjct: 15 SQIIRENRLSHAYLFSGDFGSLDMAIWLAQSRFCLTPED--GLPCSHCRP------CRLI 66 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 A D L G+ +I D IR++ S ++ G+ +V +I D M+ Sbjct: 67 AQGDFSD-----VKLVEPQGQ---IIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKMHV 118 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 NAAN+LLK +EEP ++ L++ IL TI+SR Sbjct: 119 NAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSR 154 >gi|196233919|ref|ZP_03132756.1| DNA polymerase III, gamma/tau subunits [Chthoniobacter flavus Ellin428] gi|196221968|gb|EDY16501.1| DNA polymerase III, gamma/tau subunits [Chthoniobacter flavus Ellin428] Length = 328 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 27/166 (16%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 L R+ HA L G G GK L R C+ + Sbjct: 11 LLQSAQAQNRLAHAYLITGPIGSGKRALANRV----------------------CTLLIG 48 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + + H +++ + P++ R I ++++R + L + + +G ++ +I D + Sbjct: 49 RPVENLQHPDIHV---IEPESKSRR--ILIEQMRELERSLHMRSLSGGHKIGVIVDADRL 103 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 NAANA LK+LEEPP + +L+S +L TI SRCL I S Sbjct: 104 QPNAANAFLKTLEEPPGQSSLLLLSSLPDQLLETILSRCLEIPLRS 149 >gi|28377572|ref|NP_784464.1| DNA polymerase III subunit delta' [Lactobacillus plantarum WCFS1] gi|254555750|ref|YP_003062167.1| DNA polymerase III subunit delta' [Lactobacillus plantarum JDM1] gi|300769772|ref|ZP_07079654.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28270404|emb|CAD63307.1| DNA-directed DNA polymerase III, delta' subunit [Lactobacillus plantarum WCFS1] gi|254044677|gb|ACT61470.1| DNA polymerase III subunit delta' [Lactobacillus plantarum JDM1] gi|300492680|gb|EFK27866.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 339 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HA LF G +G G+ L A + + PD ++A+ + D Sbjct: 31 LAHAYLFAGMEGAGQPELAHWIAQRLF------CLHINDGEPDGTCEECVRIANGSHPDI 84 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + ++ P+ + I VD++R ++ S +A G ++ +I+ + M +AAN+LLK Sbjct: 85 VTVA----PEGQR----IHVDQVRYLKAEFSKSAVEGNRKLFIINDAEKMTASAANSLLK 136 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +EEP V +L++ +L TI SR I+F L+ L + EQ I Sbjct: 137 FIEEPSGNVTALLLTTNKQLMLPTIISRTQVIEFPPLNAQALQQTFEQAGI 187 >gi|227487243|ref|ZP_03917559.1| possible DNA polymerase III subunit delta' [Corynebacterium glucuronolyticum ATCC 51867] gi|227092901|gb|EEI28213.1| possible DNA polymerase III subunit delta' [Corynebacterium glucuronolyticum ATCC 51867] Length = 377 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+V+++R + S T G +RV++I+ D + A N+LLK++EEPP++ + IL + + Sbjct: 81 ISVEDMRAVIRGASRTPTVGAFRVVIIEDADRLTPAAGNSLLKTVEEPPERTVIILCAPS 140 Query: 170 S--PTILSTIRSRC 181 + +L T+ SRC Sbjct: 141 TDPEDMLQTLVSRC 154 >gi|72080595|ref|YP_287653.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae 7448] Length = 719 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 10 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 65 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 108 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 109 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 168 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ +I + V + + GS+ AI IL Sbjct: 169 VQRYNFLALKEDEICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILE 221 >gi|308179724|ref|YP_003923852.1| DNA polymerase III subunit delta' [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045215|gb|ADN97758.1| DNA polymerase III subunit delta' [Lactobacillus plantarum subsp. plantarum ST-III] Length = 339 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HA LF G +G G+ L A + + PD ++A+ + D Sbjct: 31 LAHAYLFAGMEGAGQPELAHWIAQRLF------CLHINDGEPDGTCEECVRIANGSHPDI 84 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + ++ P+ + I VD++R ++ S +A G ++ +I+ + M +AAN+LLK Sbjct: 85 VTVA----PEGQR----IHVDQVRYLKAEFSKSAVEGNRKLFIINDAEKMTASAANSLLK 136 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +EEP V +L++ +L TI SR I+F L+ L + EQ I Sbjct: 137 FIEEPSGNVTALLLTTNKQLMLPTIISRTQVIEFPPLNAQALQQTFEQAGI 187 >gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A] gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A] Length = 311 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 41/196 (20%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 D V + + G IE L +G M H LLF G G+GK T A VL Sbjct: 13 DVVDQKEIIGS--IEALLKN---AGEMPH-LLFSGSAGVGKTTTALCIARQVL------- 59 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 H + L L+ S G R D+++R F + Sbjct: 60 ------------------GPHIQDNLLELNASDERGIGMVR-----DKVKRFSNFAAFEE 96 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +++I++D D M +A AL +++E+ + FI++++ I+ I+SRC KF Sbjct: 97 IP--FKIIILDEADEMTADAQTALRRTIEDASKICRFIIVANNISKIIDPIQSRCAVYKF 154 Query: 187 NSLSENNLYKALEQLK 202 S+ E +A+ QLK Sbjct: 155 TSIPEK---EAMAQLK 167 >gi|312601231|gb|ADQ90486.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae 168] Length = 721 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 28/233 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + + L SG HA LF G G GK T+ +A + Sbjct: 12 RKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI----- 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + +PC +K + D + + + + + ++ IR + Sbjct: 67 --NCTHKTDLIEPCQNCIKNFNNSL--DIIEMDAA------------SHNGVKEIREIIE 110 Query: 124 LTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ ++D V ++ +A NA LK+LEEPP+ ++FIL + I TI SR Sbjct: 111 NSINFPQISPYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 170 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F +L E+ L LE+ +I + V + + GS+ AI IL Sbjct: 171 VQRYNFLALKEDEICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILE 223 >gi|227541588|ref|ZP_03971637.1| DNA polymerase III subunit delta [Corynebacterium glucuronolyticum ATCC 51866] gi|227182556|gb|EEI63528.1| DNA polymerase III subunit delta [Corynebacterium glucuronolyticum ATCC 51866] Length = 403 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I+V+++R + S T G +RV++I+ D + A N+LLK++EEPP++ + IL + + Sbjct: 107 ISVEDMRAVIRGASRTPTVGAFRVVIIEDADRLTPAAGNSLLKTVEEPPERTVIILCAPS 166 Query: 170 S--PTILSTIRSRC 181 + +L T+ SRC Sbjct: 167 TDPEDMLQTLVSRC 180 >gi|227824061|ref|YP_002828034.1| DNA polymerase III subunits gamma and tau [Sinorhizobium fredii NGR234] gi|227343063|gb|ACP27281.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium fredii NGR234] Length = 645 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 52 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPT 111 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 112 IDLRIPGEHC----------QAIMDGRHVDVIEMDAASH--TG-------IDDIREIIEQ 152 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 153 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 212 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 213 QRFDLRRISASDL 225 >gi|300311912|ref|YP_003776004.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gi|300074697|gb|ADJ64096.1| DNA polymerase III delta subunit protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 18/187 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCS-------PFVKQ 83 R+ HALLF G G GK +A +L ++P +C C+ P ++ Sbjct: 26 RLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACGVCAS--CNWFSQSNHPDYRR 83 Query: 84 MASHALHDFLYLSYSLNPK-TGKWRTV----ITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 + L D + K T K I +D+IR + F++++ + RV+M+ P Sbjct: 84 VRPEVLDDETADDEAGEEKKTAKASKAPSKDIKIDQIRALADFMNVSTHRSGLRVVMLYP 143 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + +N AANALLK+LEEPP +F+L+S+ +L TI SRC KF +LS +AL Sbjct: 144 AEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTILSRCR--KF-ALSAPGHGEAL 200 Query: 199 EQLKIMG 205 LK G Sbjct: 201 AWLKQQG 207 >gi|325849214|ref|ZP_08170665.1| hypothetical protein HMPREF9246_0041 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480214|gb|EGC83281.1| hypothetical protein HMPREF9246_0041 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 218 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++ +R + + L + G ++ +ID + ++ +NALLKS+EE +L I ++ Sbjct: 66 ISIKTVRLLINDMYLRPSNGKIKIYIIDESERLSLEGSNALLKSIEEAKDYILIIFTTNN 125 Query: 170 SPTILSTIRSRCLSIKFNSLSEN 192 S ++L TIRSRC I F S EN Sbjct: 126 SFSLLKTIRSRCQIISFKSEKEN 148 >gi|6466222|gb|AAF12838.1|AF203881_11 DNA polymerase III subunits tau and gamma [Zymomonas mobilis subsp. mobilis ZM4] Length = 597 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 14/211 (6%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + L R+ HA L G +G+GK + R L K DPC Sbjct: 3 RTLGNAIARDRLAHAFLLTGVRGVGKTSTA-RLIAKALNC--VGKDGHGGMTIDPCGECE 59 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 A + TG VD+IR I + + + ++V +ID V Sbjct: 60 ACRAIAEGRHIDVVEMDAASHTG-------VDDIRDIVESVRYASVSARFKVYIIDEVHM 112 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY----KA 197 ++++A NALLK+LEEPP V F+ + + T+ SRC +S L K Sbjct: 113 LSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVLSRCQRFDLRRISTATLTDYFSKV 172 Query: 198 LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 ++ ++ + + AA GSV + IL Sbjct: 173 VQLEQVEAEEEALAMIAKAAEGSVRDGLSIL 203 >gi|320532120|ref|ZP_08032996.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral taxon 171 str. F0337] gi|320135669|gb|EFW27741.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral taxon 171 str. F0337] Length = 357 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + L + R+ HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAYLFSGPRGCGKTT-SARILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++AP PC P + +A+ + G VD+ R +R Sbjct: 63 CAQAPTDT----PCGTCPSCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 AAFAPARDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + L L L Sbjct: 172 HHYPFRLVPPDVLEGYLGHL 191 >gi|313900805|ref|ZP_07834295.1| putative DNA polymerase III, delta' subunit [Clostridium sp. HGF2] gi|312954225|gb|EFR35903.1| putative DNA polymerase III, delta' subunit [Clostridium sp. HGF2] Length = 325 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 21/173 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGH-VLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ HA +F G G K + A V + F+ +C D C +++A + Sbjct: 24 NRLAHAYMFSGPSGTPKKETAYLLAQSLVCRESGFA---CEVC--DTC----ERIAHNEY 74 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDPVDGMNRNAA 147 D +YL + I D+I ++++ + T TG ++ ++D + +A Sbjct: 75 ADMIYLDGT--------SVSIKKDDILKLQHAFAKTGLEKTG-KKIYVLDHAENATPDAL 125 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 N+LLK LEEP ++ ILI +L TI SRC +I F LS + + A+++ Sbjct: 126 NSLLKFLEEPGSDMIAILIVEQLDRVLPTIISRCQNIPFTPLSASQCHAAVQE 178 >gi|15828524|ref|NP_325884.1| DNA polymerase III subunit delta' [Mycoplasma pulmonis UAB CTIP] gi|14089466|emb|CAC13226.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Mycoplasma pulmonis] Length = 297 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++++I ++ ++ NALLK+LEEP V+ +L+++ +I+STIRSRC I N Sbjct: 87 GQKKILIIKDIEKSSKQMINALLKTLEEPSPNVVILLVTNNFHSIISTIRSRCQIIGVNQ 146 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 L KA +K + + S+ + + + Y + K+++ + D +I +I I R+ Sbjct: 147 PDIQEL-KAF--VKSLNYQSEFEKIYLEIYKNKEDLAKMINLENDNLIKDFIKAIGQSRK 203 Query: 249 -EYAL 252 +Y+L Sbjct: 204 SKYSL 208 >gi|284989074|ref|YP_003407628.1| DNA polymerase III subunits gamma and tau [Geodermatophilus obscurus DSM 43160] gi|284062319|gb|ADB73257.1| DNA polymerase III, subunits gamma and tau [Geodermatophilus obscurus DSM 43160] Length = 765 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 82/209 (39%), Gaps = 37/209 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + L GR++HA LF G +G GK T R L Q Sbjct: 7 RKYRPATFAEVVGQEHVTAPLVNAVDGGRINHAYLFSGPRGCGK-TSSARILARSLNCEQ 65 Query: 61 NPDFSKAPVRMCN------PD-PCSPFVKQM--ASHALHDFLYLSYSLNPKTGKWRTVIT 111 P + P C PD P S V ++ ASH Sbjct: 66 GP--TSTPCGTCGSCVALAPDGPGSLDVIEIDAASHG----------------------G 101 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R ++V +ID + NALLK +EEPP+ ++F+ + Sbjct: 102 VDDARDLRERAFFAPVNSRFKVYIIDEAHMVTTQGFNALLKVVEEPPEFLVFVFATTEPD 161 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +LSTIRSR F + L LE+ Sbjct: 162 KVLSTIRSRTHHYPFRLVPPTTLRGLLEK 190 >gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae WSM419] gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae WSM419] Length = 625 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGHVLQNPD 63 ++ + G E + + L+ + +GR+ A + G +G+GK T Y + P Sbjct: 32 FSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTTGIDKPT 91 Query: 64 FS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q H D + + + + TG +D+IR I Sbjct: 92 IDLRLPGEHC----------QAIMDGRHVDVIEMDAASH--TG-------IDDIREIIEQ 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SRC Sbjct: 133 VRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 192 Query: 182 LSIKFNSLSENNL 194 +S ++L Sbjct: 193 QRFDLRRISASDL 205 >gi|24475504|dbj|BAC22717.1| dnaX [Wolbachia endosymbiont of Callosobruchus chinensis] Length = 516 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + + L + ++ ++L G G+GK T R L + S Sbjct: 31 PSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 86 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+++ I + + Sbjct: 87 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDVKVILGDICYS 133 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL I TI +RC Sbjct: 134 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILAPPEIKKIPITIIARC 189 >gi|260663206|ref|ZP_05864098.1| DNA-directed DNA polymerase III delta prime subunit [Lactobacillus fermentum 28-3-CHN] gi|260552398|gb|EEX25449.1| DNA-directed DNA polymerase III delta prime subunit [Lactobacillus fermentum 28-3-CHN] Length = 346 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R ++ S T G +V +I+ + + +AAN+LLK +EEP V L++ Sbjct: 91 IKVDQVRYLKAEFSKTGVEGEKKVFIIEGAESLTGSAANSLLKFIEEPGPGVYIFLLTPN 150 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +L T++SRC I+ L + + L++ + Sbjct: 151 KNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGV 184 >gi|329766837|ref|ZP_08258366.1| hypothetical protein HMPREF0428_00063 [Gemella haemolysans M341] gi|328838563|gb|EGF88169.1| hypothetical protein HMPREF0428_00063 [Gemella haemolysans M341] Length = 278 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 26/177 (14%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGI--GKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 K L+ + ++ HA L GE + + L F A L+N + CN C Sbjct: 11 KSLTNTLKTNKLSHAYLVIGEDSLYSDEFILSFVKAIFCLENKNKEFFSCESCNN--CRS 68 Query: 80 FVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG---YWRVIM 135 +H + DF Y L T I DEI+ ++ LS+ + G YW Sbjct: 69 I-----NHGNYVDF----YKLTSDTS-----IKKDEIQTLKSDLSIKSFYGKKIYW---- 110 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 I ++ M AAN+LLK LEEP ++ IL +L TI SRC IK SE+ Sbjct: 111 IKDIEKMTEQAANSLLKFLEEPEDDIIAILSCKNISAVLPTIISRCQQIKLVGQSED 167 >gi|58699909|ref|ZP_00374504.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] gi|58533574|gb|EAL57978.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] Length = 396 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 19/176 (10%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L G + + L + ++ ++L G G+GK T R L + S Sbjct: 9 PSSFKDLVGQYILVRVLENAFILNKIPQSILLSGSSGVGKTTTA-RIIALCL---NCSLG 64 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--ITVDEIRRIRYFLSLT 125 P+ +PC + + L + S +P + ++D+I+ I + + Sbjct: 65 PIF----EPCG---------SCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYS 111 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V FIL + I TI +RC Sbjct: 112 PISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 167 >gi|328906773|gb|EGG26545.1| DNA polymerase III subunit delta' [Propionibacterium sp. P08] Length = 398 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 25/235 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASHALH 90 M HA L G G G++ +A LQ D C P V + + AL Sbjct: 34 MSHAWLITGPPGSGRSNAAKSFAA-ALQCVDHGCGRCNACRTALSGAHPDVTLVRTEALS 92 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 I VDE+R + ++ G +V++++ D + +AL Sbjct: 93 -------------------IGVDEVRELVRRAAMNPVHGRHQVVVVEDADRITERGGDAL 133 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK++EEP K +++L + ++ TIRSRC + + + + L + + Sbjct: 134 LKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLATPRDEAVADLLTCRDGIAPEVAA 193 Query: 211 DFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 + V+ A G + RA + L +D ++ + + +P + +L Q A++L++Q Sbjct: 194 EAVR-AGQGHIGRA-RRLAWD-EEARTRRNAIGELPTRLRSLGDCLQAAEDLVTQ 245 >gi|239904919|ref|YP_002951657.1| putative DNA polymerase III delta' subunit [Desulfovibrio magneticus RS-1] gi|239794782|dbj|BAH73771.1| putative DNA polymerase III delta' subunit [Desulfovibrio magneticus RS-1] Length = 287 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 16/148 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M AL+ EG +A + A + N + P +C P Q+ D Sbjct: 30 MPQALILEGGTADERAAMAMWLAARL--NCGAHQPPCGVC------PVCIQIRDFVFKDL 81 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 LY L I V ++R +R + WRV+++ + AANALLK Sbjct: 82 LYFDGGLE--------TIKVADMREVRALVGEPPRGAGWRVVILAQAQALTDEAANALLK 133 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSR 180 ++EEP F+L++ + T+ SR Sbjct: 134 AMEEPRPGNAFVLLTPQRERLFPTLVSR 161 >gi|257470814|ref|ZP_05634904.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium ulcerans ATCC 49185] gi|317065018|ref|ZP_07929503.1| ATPase and helicase [Fusobacterium ulcerans ATCC 49185] gi|313690694|gb|EFS27529.1| ATPase and helicase [Fusobacterium ulcerans ATCC 49185] Length = 303 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 10/126 (7%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD +R + Y S ++ G ++ ++ + M + A N+LLK +EEP + FIL+S + Sbjct: 85 IKVDAVRELAYKSSSSSYEGGRKIFILKDIQKMKKEAGNSLLKLIEEPNEGSFFILLS-S 143 Query: 170 SPTILSTIRSRCLSIKFNSLSENNL--------YKALEQLKIMGW-DSKRDFVKIAAYGS 220 S IL TI+SR + +K + L + I G+ DS+ D K YG+ Sbjct: 144 SLNILPTIKSRSILVKIKKRNAQELNVDDFTYSFYMGNSEDIKGFKDSELDLNKSEFYGN 203 Query: 221 VARAIK 226 + +K Sbjct: 204 IGNFLK 209 >gi|254384081|ref|ZP_04999426.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1] gi|194342971|gb|EDX23937.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1] Length = 753 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTVPLMQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 74 CEQGP----TPTPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L ++ D V A GSV ++ ++ D++++ Sbjct: 183 HHYPFRLVPPGTLREYLGEVCGREGATVEDGVLPLVVRAGAGSVRDSMSVM----DQLLA 238 Query: 238 SYID 241 D Sbjct: 239 GAAD 242 >gi|297183472|gb|ADI19603.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 563 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 23/260 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G + + + ++ ++ +A L G +G+GK T A + DF Sbjct: 13 YRPKNFEELIGQDMMVQTITNSIKLDKLPNAYLLTGIRGVGKTTTARLIAKAINCKMDFF 72 Query: 66 KAPVRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + CN + C K++ + D L + + +TG +D++R + Sbjct: 73 QG--EKCNSNEHC--HCKEIINSRHLDVLEMDAA--SRTG-------IDDVRELIESSKY 119 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++ +ID V +++ A N LLK+LEEPP + FI + + TI SRC Sbjct: 120 NPTHAKYKIFIIDEVHMLSKQAFNGLLKTLEEPPPHLKFIFATTEVKKVPVTIVSRCQRF 179 Query: 185 KFNSLSENNLYKALEQ-LKIMGW---DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 + +S L L++ LKI D+ + + GSV ++ +L ++S +I Sbjct: 180 DLHRVSIKVLLGQLKKILKIENGNISDAALKLIAKTSEGSVRDSLSLLDR---ALVSQHI 236 Query: 241 DLIHIPRQEYALQKMQQIAD 260 I E ++KM IAD Sbjct: 237 TEKEI--DETFVRKMLGIAD 254 >gi|254796847|ref|YP_003081684.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii str. Illinois] gi|254590084|gb|ACT69446.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii str. Illinois] Length = 403 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 19/228 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G + + K LS + A+L G G GK T +L + Sbjct: 17 YRPRLLNEIVGQDFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTLSLLCSNRMD 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + SH D L + + N R +I E + LS Sbjct: 77 VLPCLKC--DSCLSVLN--GSHP--DVLEIDAASNTGVEDVRMLI---EGALYKPLLS-- 125 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ +ID V ++++A NALLK LEEPPQ V F L + I +TI SRC + Sbjct: 126 ----KYKSYIIDEVHMLSQSAFNALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYR 181 Query: 186 FNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + LS L + E+ +I F+ A GS+ A+ +L Sbjct: 182 LSRLSRFVITERLTQVAEREQIEIAQDAIKFIAEKADGSLRDALSLLE 229 >gi|313835738|gb|EFS73452.1| DNA polymerase III subunit delta [Propionibacterium acnes HL037PA2] gi|314928411|gb|EFS92242.1| DNA polymerase III subunit delta [Propionibacterium acnes HL044PA1] gi|314970108|gb|EFT14206.1| DNA polymerase III subunit delta [Propionibacterium acnes HL037PA3] Length = 401 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 25/235 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASHALH 90 M HA L G G G++ +A LQ D C P V + + AL Sbjct: 37 MSHAWLITGPPGSGRSNAAKSFAA-ALQCVDHGCGRCNACRTALSGAHPDVTLVRTEALS 95 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 I VDE+R + ++ G +V++++ D + +AL Sbjct: 96 -------------------IGVDEVRELVRRAAMNPVHGRHQVVVVEDADRITERGGDAL 136 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK++EEP K +++L + ++ TIRSRC + + + + L + + Sbjct: 137 LKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLATPRDEAVADLLTCRDGIAPEVAA 196 Query: 211 DFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 + V+ A G + RA + L +D ++ + + +P + +L Q A++L++Q Sbjct: 197 EAVR-AGQGHIGRA-RRLAWD-EEARTRRNAIGELPTRLRSLGDCLQAAEDLVTQ 248 >gi|229051624|ref|ZP_04195094.1| DNA polymerase III subunit delta' [Bacillus cereus AH676] gi|228721735|gb|EEL73209.1| DNA polymerase III subunit delta' [Bacillus cereus AH676] Length = 191 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 13/177 (7%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +N+ + + L + ++ HA LF GE G K + + + + P Sbjct: 10 WNEVMRKQHIVGTILKNGLVNKKVSHAYLFNGEAGTLKKETALLFIKSLFCLENSERKP- 68 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 CN D + H D + +S P+ G I ++I+++ +S T+ Sbjct: 69 --CN-DCRNCNRINNNIHP--DIVIIS----PEEGG---SIKKEQIQQLHKEISYTSTEL 116 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++ +ID V+ + +AAN+LLK LEEP IL++ +L TI+SRC + F Sbjct: 117 SRKIYLIDRVEMLTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTIQSRCQILNF 173 >gi|325288360|ref|YP_004264541.1| DNA-directed DNA polymerase [Syntrophobotulus glycolicus DSM 8271] gi|324963761|gb|ADY54540.1| DNA-directed DNA polymerase [Syntrophobotulus glycolicus DSM 8271] Length = 293 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 ++ I ++EI +++ + G ++V +I+ D + AANALLK EEPP+ L IL Sbjct: 76 KSSIGIEEILKMQENIYKKPFEGKYKVYLIEQADRLTLPAANALLKVAEEPPENTLLILS 135 Query: 167 SHASPTILSTIRSRCLSIKF 186 + S I++T+RSR + F Sbjct: 136 TANSERIIATLRSRAQEVYF 155 >gi|257069728|ref|YP_003155983.1| DNA polymerase III, gamma/tau subunit [Brachybacterium faecium DSM 4810] gi|256560546|gb|ACU86393.1| DNA polymerase III, gamma/tau subunit [Brachybacterium faecium DSM 4810] Length = 394 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%) Query: 14 LFGHED-IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E + +F G + A L G G G++T +A + R C Sbjct: 22 VVGQEAAVAQFRRAASPEGSLAQAWLVTGPPGSGRSTAARAFAATLQCEQGTGCGQCRAC 81 Query: 73 NPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + P V +A+ L I +E+R + TG Sbjct: 82 RTTLANTHPDVTVVATDKLS-------------------IAKEEVRALVMTAQRAPATGN 122 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV++I+ D M+ N LLKS+EEPP +++L + ++ + TIRSRC Sbjct: 123 RRVVIIEDADRMSAGTFNVLLKSIEEPPPATVWMLCAPSAEDLAPTIRSRC 173 >gi|148285151|ref|YP_001249241.1| DNA polymerase III subunit delta' [Orientia tsutsugamushi str. Boryong] gi|146740590|emb|CAM81240.1| DNA polymerase III delta subunit [Orientia tsutsugamushi str. Boryong] Length = 290 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVD+IR + +FL+ T ++ +I + MN N+AN LK LE+PP LI+ Sbjct: 69 ITVDQIRDMLFFLNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINRYIFLITTK 128 Query: 170 SPTILSTIRSRC--LSIKF 186 +ILSTI+SRC L+ KF Sbjct: 129 FASILSTIKSRCHLLTQKF 147 >gi|253581399|ref|ZP_04858625.1| ATPase and helicase [Fusobacterium varium ATCC 27725] gi|251836763|gb|EES65297.1| ATPase and helicase [Fusobacterium varium ATCC 27725] Length = 303 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD +R + Y S ++ G R+ ++ + M + A N+LLK +EEP + FIL+S + Sbjct: 85 IKVDAVRELAYKSSSSSYEGGKRIFILKDIHKMKKEAGNSLLKLIEEPNEGSFFILLS-S 143 Query: 170 SPTILSTIRSRCLSIK 185 S IL TI+SR + +K Sbjct: 144 SLNILPTIKSRSILVK 159 >gi|224283524|ref|ZP_03646846.1| DNA polymerase III subunits gamma and tau [Bifidobacterium bifidum NCIMB 41171] gi|313140680|ref|ZP_07802873.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] gi|313133190|gb|EFR50807.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] Length = 954 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 43/276 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + SG++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDSGKLTHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECASCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKI---MGWDSKRDFVKI-------AAY 218 F + + + LE+ LK+ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVAR--AIKILHYDCDKIISSYIDLIHIPRQEYAL 252 G +A A+ +L + + +I +D + I R AL Sbjct: 232 GVIAHDAAVALLGFTPEALIGEAVDAV-IARNGEAL 266 >gi|88657800|ref|YP_506849.1| DNA polymerase III, subunits gamma and tau [Ehrlichia chaffeensis str. Arkansas] gi|88599257|gb|ABD44726.1| DNA polymerase III, subunits gamma and tau [Ehrlichia chaffeensis str. Arkansas] Length = 505 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 29/233 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + + L + ++ ++L G G+GK T R L + Sbjct: 20 YRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAA-RIISMCL---NCI 75 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P DPC+ ++ + D + + + N + ++ RY Sbjct: 76 SGPTS----DPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVIL-----ENSRYM-- 124 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 125 --PISSKFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQR 182 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF----VKIAAY---GSVARAIKILH 229 F +S + K ++ LK++ F +K+ AY GS+ A+ +L Sbjct: 183 FDFQRISTD---KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLE 232 >gi|319441767|ref|ZP_07990923.1| DNA polymerase III subunits gamma and tau [Corynebacterium variabile DSM 44702] Length = 854 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 21/205 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 SGR++HA LF G +G GK + + + ++ P + P +C D C Sbjct: 11 SGRINHAYLFSGPRGCGKTSSARILARSLNCVKGP--TSTPCGVC--DSCVALAP--GGP 64 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D L + T VD++R +R +RV +ID ++ Sbjct: 65 GTLDVTELDAA---------THNGVDDMRELRDRAFYAPAESRYRVFIIDEAHMISSAGF 115 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKI 203 NALLK +EEPP+ ++FI + +L TIRSR + F L+ L K E + Sbjct: 116 NALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLTPPAMRGLLSKVCEDEGV 175 Query: 204 MGWDSKRDFVKIAAYGSVARAIKIL 228 + D+ V A GS ++ IL Sbjct: 176 VVEDAVYPLVIRAGGGSPRDSLSIL 200 >gi|89069708|ref|ZP_01157044.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus HTCC2516] gi|89044654|gb|EAR50765.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus HTCC2516] Length = 583 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 12/182 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC A + +TG V +IR I Sbjct: 69 VGADGQGGPTT----EPCGRCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ S Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177 Query: 180 RC 181 RC Sbjct: 178 RC 179 >gi|167043090|gb|ABZ07800.1| hypothetical protein ALOHA_HF4000ANIW141I9ctg1g1 [uncultured marine microorganism HF4000_ANIW141I9] Length = 480 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +DEIR +R + + ++V +ID V + A NALL++LEEPP FI+ + Sbjct: 29 IDEIRNLRENIKFSPMNANFKVYIIDEVHMLTTQAFNALLRTLEEPPPHGKFIMCTTDIH 88 Query: 172 TILSTIRSRCLSIKFNSLS----ENNLYKALEQLKIMGWDSKR-DFVKIAAYGSVARAIK 226 + +TI SRC FN +S + + L++ KI +DS+ + A GS+ A+ Sbjct: 89 KMPATIISRCQRFDFNRISSTIISDRMKYILDEEKI-KYDSESLAAISRKADGSMRDALS 147 Query: 227 ILHYDCDKIIS 237 IL D++IS Sbjct: 148 IL----DQVIS 154 >gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae DFL 12] gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12] Length = 587 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 23/237 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 11 VLARKYRPATFADLIGQDAMVRTLRNAFQADRIAQAFMMTGIRGTGKTTTARIIAKGMNC 70 Query: 60 QNPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D + P DPC + + + D + + + K R + +D + Sbjct: 71 TGADGAGGP----TTDPCGQCDNCRGIMAGQHVDVIEMDGASQTKIDDIRANV-LDSV-- 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 Y+ +A +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 124 --YYAPASAR---YKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 178 Query: 178 RSRCLSIKFNSLSENNL------YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 SRC + + LE+ +I D + AA GSV A+ +L Sbjct: 179 LSRCQRFDLRRIEPEVMIAHLRRIAGLERAEIT--DDALALITRAAEGSVRDAMSLL 233 >gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] Length = 654 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 16/201 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVLQNP 62 R + P + L G E + + L + +GR+ A + G +G+GK T A G + P Sbjct: 47 RKYRPKTFEDLVGQEPMVQTLENAFDTGRIAQAWMLTGVRGVGKTTTARILARGLNYEVP 106 Query: 63 DFSKAP-VRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P V++ C ++ H D + + + + TG + +IR I Sbjct: 107 GEADKPTVKLTQEGTHCKAIME--GRHV--DVIEMDAASH--TG-------ISDIREIID 153 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SR Sbjct: 154 AARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSR 213 Query: 181 CLSIKFNSLSENNLYKALEQL 201 C + ++ L L ++ Sbjct: 214 CQRFDLRRIDQSKLIGLLRRI 234 >gi|184154765|ref|YP_001843105.1| DNA polymerase III subunit delta' [Lactobacillus fermentum IFO 3956] gi|227514032|ref|ZP_03944081.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|183226109|dbj|BAG26625.1| DNA-directed DNA polymerase III delta prime subunit [Lactobacillus fermentum IFO 3956] gi|227087618|gb|EEI22930.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 346 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R ++ S T G +V +I+ + + +AAN+LLK +EEP V L++ Sbjct: 91 IKVDQVRYLKAEFSKTGVEGEKKVFIIEGAETLTGSAANSLLKFIEEPGPGVYIFLLTPN 150 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +L T++SRC I+ L + + L++ + Sbjct: 151 KNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGV 184 >gi|72163181|ref|YP_290838.1| DNA polymerase III subunit delta' [Thermobifida fusca YX] gi|71916913|gb|AAZ56815.1| DNA polymerase III delta prime subunit [Thermobifida fusca YX] Length = 390 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + + G +RV++ + D A+NALLK++EEP + +++L + + Sbjct: 97 VEQTRELVVRAASSPTGGRFRVVLFEDADRATEAASNALLKAIEEPAPRTVWLLCTPTAH 156 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TIRSRC + + S + AL Sbjct: 157 DLLVTIRSRCRLVNLRTPSTEAIIDAL 183 >gi|157877944|ref|XP_001687264.1| replication factor C, subunit 5 [Leishmania major strain Friedlin] gi|68130339|emb|CAJ09651.1| putative replication factor C, subunit 5 [Leishmania major strain Friedlin] Length = 351 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 19/175 (10%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LLF G G GK T + FS VR+ + Q++ + D LS Sbjct: 37 LLFYGPSGSGKKTRAMAMLHEIYGPSVFS---VRLEHKS------VQVSDSKVVDIATLS 87 Query: 97 ----YSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-----WRVIMIDPVDGMNRNA 146 +NP G + I + IR I + L + +G ++V++++ VD M+R A Sbjct: 88 SPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLHSTSGNRKNVPYKVVVLNEVDKMSRTA 147 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +AL +++E+ L+ +++ ++ +RSRCL I+ S S++NL A++++ Sbjct: 148 QHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHSKDNLKLAVQRV 202 >gi|68171405|ref|ZP_00544797.1| DNA-directed DNA polymerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999172|gb|EAM85830.1| DNA-directed DNA polymerase [Ehrlichia chaffeensis str. Sapulpa] Length = 492 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 29/233 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G E + + L + ++ ++L G G+GK T R L + Sbjct: 7 YRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAA-RIISMCL---NCI 62 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P DPC+ ++ + D + + + N + ++ RY Sbjct: 63 SGPTS----DPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVIL-----ENSRYM-- 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 112 --PISSKFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQR 169 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDF----VKIAAY---GSVARAIKILH 229 F +S + K ++ LK++ F +K+ AY GS+ A+ +L Sbjct: 170 FDFQRISTD---KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLE 219 >gi|294630200|ref|ZP_06708760.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14] gi|292833533|gb|EFF91882.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14] Length = 519 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 74 CEEGP----TPTPCGACQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPARSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L + L ++ Sbjct: 183 HHYPFRLVPPGTLREYLGEV 202 >gi|296876049|ref|ZP_06900105.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus parasanguinis ATCC 15912] gi|296432960|gb|EFH18751.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus parasanguinis ATCC 15912] Length = 297 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR + S + G +V ++ D M+ NAAN+LLK +EEP ++ L++ Sbjct: 86 IIKTDRIRSLVQDFSQSGFEGSRQVFIVQDADKMHTNAANSLLKVMEEPQSEIYLFLLTS 145 Query: 169 ASPTILSTIRSRCLSIKF 186 IL TI+SR + F Sbjct: 146 DENLILPTIKSRAQQVHF 163 >gi|189184770|ref|YP_001938555.1| DNA polymerase III subunit delta' [Orientia tsutsugamushi str. Ikeda] gi|189181541|dbj|BAG41321.1| DNA polymerase III delta subunit [Orientia tsutsugamushi str. Ikeda] Length = 290 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITVD+IR + +FL+ T ++ +I + MN N+AN LK LE+PP LI+ Sbjct: 69 ITVDQIRDMLFFLNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINRYIFLITTK 128 Query: 170 SPTILSTIRSRC--LSIKF 186 +ILSTI+SRC L+ KF Sbjct: 129 FASILSTIKSRCHLLTQKF 147 >gi|330817240|ref|YP_004360945.1| DNA polymerase III, delta prime subunit [Burkholderia gladioli BSR3] gi|327369633|gb|AEA60989.1| DNA polymerase III, delta prime subunit [Burkholderia gladioli BSR3] Length = 342 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 27/168 (16%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPDPCS-------PFVK 82 HALL G+ GIGK R+A H+ Q +P P C C+ P + Sbjct: 22 HALLLHGQAGIGK----LRFAQHLAQGFLCESPLPKGEPCGKCAA--CTWFEQGNHPDYR 75 Query: 83 QMASHALHDFLYLSYSLNPKTG------KWRTV---ITVDEIRRIRYFLSLTANTGYWRV 133 + AL + + PK K RT I ++++R + F+ + ++ G RV Sbjct: 76 IVLPEALAGEAPGAVADEPKADADEGGKKTRTPSKEIKIEQVRGLLDFVGVGSHRGGARV 135 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ P + +N AANALLK+LEEPP VLF+L+S +L TI SRC Sbjct: 136 VVLYPAEALNVAAANALLKTLEEPPSGVLFLLVSARLDRLLPTIISRC 183 >gi|328541815|ref|YP_004301924.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum SL003B-26A1] gi|326411567|gb|ADZ68630.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum SL003B-26A1] Length = 673 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 16/204 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G E + + L + +GR+ A + G +G+GK T A G Sbjct: 40 VLARKYRPQTFDDLVGQEPMVQTLENAFATGRIAQAWMLTGVRGVGKTTTARILARGLNY 99 Query: 60 QNPDFSKAP-VRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P + P VR+ C ++ H D + + + + TG +++IR Sbjct: 100 EIPGEADRPTVRLSREGTHCRAIME--GRHV--DVIEMDAASH--TG-------INDIRE 146 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ Sbjct: 147 ITDAARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTV 206 Query: 178 RSRCLSIKFNSLSENNLYKALEQL 201 SRC + + L L ++ Sbjct: 207 LSRCQRFDLRRIEQPKLVGLLRRI 230 >gi|304439674|ref|ZP_07399576.1| DNA-directed DNA polymerase III subunit delta' [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371854|gb|EFM25458.1| DNA-directed DNA polymerase III subunit delta' [Peptoniphilus duerdenii ATCC BAA-1640] Length = 313 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 28/201 (13%) Query: 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 C+ + HA +F GE G+GK T+ +A +L + ++ + + Sbjct: 13 CNETISHAYVFSGESGVGKFTMAKSFARMILNEEHLMR--------------IEGIDEYE 58 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D L L L+ VD++ I LSL ++ +I+ + ++ N Sbjct: 59 HPDLLVLDGKLSKSQ--------VDDM--ILESLSLPYE-AKNKIYIINHFEDLSIEGQN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 A+LK+LEEPP+ ++ IL++ +L TI SR + +S++ ++L +E G+ S Sbjct: 108 AILKTLEEPPEYLIIILVTSNISKLLPTIISRSRVLSISSVATSDLRSFIES---KGFKS 164 Query: 209 KRDFVKIAAYGSVARAIKILH 229 + + + + GS+ L Sbjct: 165 QAELISNISNGSIKEVTNYLE 185 >gi|213622752|ref|ZP_03375535.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 189 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SRCL + Sbjct: 33 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKA 92 Query: 189 LSENNLYKALEQL 201 L + LE + Sbjct: 93 LDVEQIRHQLEHI 105 >gi|116333255|ref|YP_794782.1| DNA polymerase III subunit delta' [Lactobacillus brevis ATCC 367] gi|116098602|gb|ABJ63751.1| DNA polymerase III, delta prime subunit [Lactobacillus brevis ATCC 367] Length = 337 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 + R+ HA LF G G G+ + A + P C+ C +++ + Sbjct: 27 TKRLAHAYLFNGADGTGRQQVAQTVAMRLFCQNVTDNLPCGQCSE--C----RRILAGDH 80 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 D + S+ P + I VD++R ++ + +A G ++ ++D V+ M AAN+ Sbjct: 81 PDVV----SVVPDGQR----IKVDQVRYLKAEFTKSAVEGNQKIFIVDQVERMTTGAANS 132 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 LLK +EEP + +L++ IL TI SR + F ++ L AL Sbjct: 133 LLKFIEEPVGNTVALLLTANKNLILPTILSRTQIVDFLRVAPQALLTAL 181 >gi|320526759|ref|ZP_08027949.1| hypothetical protein HMPREF9430_00037 [Solobacterium moorei F0204] gi|320132727|gb|EFW25267.1| hypothetical protein HMPREF9430_00037 [Solobacterium moorei F0204] Length = 335 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 107 RTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 ++ I+ D++ I+ S TA + RV +++ V+ + +A N++LK LEEP V+ I Sbjct: 85 KSAISKDDVDAIQEKFSKTALEDGNGSRVYILENVENASISAQNSMLKFLEEPASGVVAI 144 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 L + IL TI SRC I F+ LSE+ L ++ + D+ Sbjct: 145 LTTDNIDRILPTIVSRCTLIPFSPLSEDYLLSKAKEADVQDVDA 188 >gi|295425165|ref|ZP_06817869.1| DNA polymerase III, delta subunit [Lactobacillus amylolyticus DSM 11664] gi|295065141|gb|EFG56045.1| DNA polymerase III, delta subunit [Lactobacillus amylolyticus DSM 11664] Length = 286 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ+ S D L + + + +++D+IR ++ L+ ++ R Sbjct: 57 PDSTCRNCKQILSGNHPDVLLVQ-------TEGKQTLSIDQIRPLKEELAKSSVESTCRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 I+ + AANALL LEEP V+ ILI++ + IL T+RSR I FN E Sbjct: 110 FFINEAQKLTLPAANALLNLLEEPIAPVVSILITNNADQILPTVRSRTQIINFNEGEE 167 >gi|15612607|ref|NP_240910.1| DNA polymerase III subunit delta' [Bacillus halodurans C-125] gi|10172656|dbj|BAB03763.1| DNA polymerase III delta' subunit [Bacillus halodurans C-125] Length = 328 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 14/184 (7%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + L GR+ HA +F+G +G GK + A P + C C Sbjct: 13 VATMLKNSLAKGRLAHAYIFDGNRGTGKKRMALHLAKSFFCAQRAGVEPCQTCKE--CKR 70 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 H H ++ + P I ++ ++ S +V +++ Sbjct: 71 I-----EHGNHPDVHF---IEPDGQS----IKKHQVEHLQKEFSYRGMESAKKVYIVNHA 118 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D M +AAN+LLK LEEP + IL++ +L TI+SR + F L K LE Sbjct: 119 DKMTTSAANSLLKFLEEPLADTVAILLTEQLQNMLPTIKSRSQVLSFAPLEVQAFAKLLE 178 Query: 200 QLKI 203 + I Sbjct: 179 EEGI 182 >gi|187918617|ref|YP_001884182.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH] gi|119861465|gb|AAX17260.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH] Length = 347 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 IT++++R+I+ F +L+ +VI I+ ++ +N N NALLK LEEPP + FIL + Sbjct: 144 ITINDVRKIK-FWALSEKHKI-KVIYINEIENLNFNVYNALLKILEEPPLNIYFILATRN 201 Query: 170 SPTILSTIRSRCLSIKF 186 I TI SR KF Sbjct: 202 KNKIPKTILSRLRVYKF 218 >gi|148269302|ref|YP_001243762.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga petrophila RKU-1] gi|170287961|ref|YP_001738199.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga sp. RQ2] gi|281412000|ref|YP_003346079.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga naphthophila RKU-10] gi|147734846|gb|ABQ46186.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga petrophila RKU-1] gi|170175464|gb|ACB08516.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga sp. RQ2] gi|281373103|gb|ADA66665.1| DNA polymerase III gamma/tau subunits-like protein [Thermotoga naphthophila RKU-10] Length = 312 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DEIR I+ FL+ + + +++ + M + AANA LK+LEEPP+ + +L + Sbjct: 69 IGIDEIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKTLEEPPEYAVIVLNTRH 128 Query: 170 SPTILSTIRSRCLSI------KFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L TI+SR + +F L + + E+L ++ D K F Sbjct: 129 WHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDFWEELPLLERDFKTAF 177 >gi|217965748|ref|YP_002351426.1| DNA polymerase III subunit delta [Listeria monocytogenes HCC23] gi|290892278|ref|ZP_06555273.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-071] gi|217335018|gb|ACK40812.1| DNA polymerase III subunit delta [Listeria monocytogenes HCC23] gi|290558104|gb|EFD91623.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-071] gi|307569705|emb|CAR82884.1| DNA polymerase III, delta subunit [Listeria monocytogenes L99] Length = 330 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L++ + A + N Sbjct: 16 KIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLESTETELACGKCAN------ 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 70 -CMRIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV +A Sbjct: 178 SLTAAGISEQKARIYASITGSVEQA 202 >gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] Length = 606 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 24/244 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHVL 59 ++ R + P L G + + + L + + R+ A + G +G GK T A G Sbjct: 16 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 75 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P +PC A + +TG V +IR I Sbjct: 76 IGEDGQGGPTT----EPCGKCEHCTAIMEGRHVDVMEMDAASRTG-------VGDIREII 124 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 125 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 184 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKILHYDCD 233 RC + + L+ KI G ++ + + AA GS A +L D Sbjct: 185 RCQRFDLRRIEPEVMIGLLQ--KIAGAENAQIAEDALALITRAAEGSARDATSLL----D 238 Query: 234 KIIS 237 + IS Sbjct: 239 QAIS 242 >gi|282863500|ref|ZP_06272559.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE] gi|282561835|gb|EFB67378.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE] Length = 774 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 16 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 71 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 72 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 181 HHYPFRLVPPGTLRSYLAEV 200 >gi|239930314|ref|ZP_04687267.1| DNA polymerase III subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] Length = 430 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEEGP----TPTPCGTCQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPAQSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 173 HHYPFRLVPPGTLRDYLGEV 192 >gi|229113204|ref|ZP_04242699.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-15] gi|228670230|gb|EEL25578.1| DNA polymerase III, delta prime subunit [Bacillus cereus Rock1-15] Length = 339 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 15/165 (9%) Query: 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 L + ++ HA LF GE G K + + + + P C C Sbjct: 23 ILKNGLVNKKVSHAYLFNGEAGTLKKETALLFIKSLFCFENSERIPCNDCRN--CDRI-- 78 Query: 83 QMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 ++ +H D + +S P+ G I ++I+++ +S T+ ++ +ID V+ Sbjct: 79 ---NNNIHPDVVIIS----PEEG---GSIKKEQIQQLHKEISYTSTELSRKIYLIDRVEM 128 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +AAN+LLK LEEP IL++ +L TI+SRC + F Sbjct: 129 LTTSAANSLLKFLEEPDGNTTAILVTENIRKVLGTIQSRCQILNF 173 >gi|313902251|ref|ZP_07835657.1| hypothetical protein ThesuDRAFT_1911 [Thermaerobacter subterraneus DSM 13965] gi|313467481|gb|EFR62989.1| hypothetical protein ThesuDRAFT_1911 [Thermaerobacter subterraneus DSM 13965] Length = 357 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +D +RR+ LSL + G +VI+ D + AANALLKS+EEPP +F+ + P Sbjct: 96 IDAVRRLLALLSLRPHAGGRKVILWQDADRLTVQAANALLKSVEEPPPFAVFLFTTDHLP 155 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKAL 198 +L T+RSRC + F K L Sbjct: 156 AVLPTLRSRCQVVPFRPQPREERAKDL 182 >gi|74185604|dbj|BAE32694.1| unnamed protein product [Mus musculus] Length = 393 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 29/246 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 39 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 98 Query: 62 PDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P PC + +A + G VD+ R +R Sbjct: 99 P----------TPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLR 141 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ +ID + NALLK +EEPP V FI + ++ TIRS Sbjct: 142 ERAFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRS 201 Query: 180 RCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKI 235 R F + L + L +L G D + + A GSV ++ +L D++ Sbjct: 202 RTHHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQL 257 Query: 236 ISSYID 241 + D Sbjct: 258 LGGVAD 263 >gi|325958394|ref|YP_004289860.1| Replication factor C small subunit [Methanobacterium sp. AL-21] gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21] Length = 347 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 63/326 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E L +Y G M + L+F G G+GK T A +L Sbjct: 35 YRPQTLDEVVGQEHTILRLKRYVKEGNMPN-LMFTGPAGVGKTTTSIALAKEML------ 87 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSL 124 + +FL L+ S +D +R I+ F L Sbjct: 88 -------------------GEYWRQNFLELNAS---------DARGIDTVRNDIKSFCRL 119 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 A +R+I +D VD M ++A +AL + +E + FIL + S I+ I+SRC Sbjct: 120 KAVGSPFRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIF 179 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-----AYGSVARAIKILHYDC---DKII 236 +F + + + K LE + K D I A G + RA+ IL +++ Sbjct: 180 RFVPVKGHQIIKRLEYIA-QAEGLKIDIAAIESIVYFAEGDMRRAVNILQASSSAGEEVT 238 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQD----QKIAFDFLI------EFILKEICKSA 286 +D + + ++K I ++ L D +++ D ++ E ++ +I + Sbjct: 239 EESVDEVVSKAKPKDVKK---IVNKALDGDFIGARELLRDVMVVQGTSGEDMVTQIYQEV 295 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRV 312 AL G L E IY +LV+ + Sbjct: 296 SKMALDGSLNE-----DIYINLVESI 316 >gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] Length = 635 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 27/206 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P L G E + + L + +GR+ A + G +G+GK T Y Sbjct: 44 RKYRPQNFNDLIGQEPMVRTLKNAFETGRIAQAWMLTGVRGVGKTTTARILARALNYKTD 103 Query: 58 VLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 + P P C Q H D + + + + TG +D+I Sbjct: 104 TVDQPTIDLSVPGENC----------QAIMEGRHVDVIEMDAASH--TG-------IDDI 144 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + ++V +ID V ++ A N LLK+LEEPP V FI + + Sbjct: 145 REIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPI 204 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 T+ SRC + L L ++ Sbjct: 205 TVLSRCQRFDLRRIESGTLAAHLRRI 230 >gi|23308788|ref|NP_599564.2| DNA polymerase III subunit delta' [Corynebacterium glutamicum ATCC 13032] gi|62389210|ref|YP_224612.1| DNA polymerase III subunit delta' [Corynebacterium glutamicum ATCC 13032] gi|145294443|ref|YP_001137264.1| DNA polymerase III subunit delta' [Corynebacterium glutamicum R] gi|21323076|dbj|BAB97705.1| ATPase involved in DNA replication [Corynebacterium glutamicum ATCC 13032] gi|41324543|emb|CAF18882.1| PUTATIVE DNA POLYMERASE III, DELTA' SUBUNIT [Corynebacterium glutamicum ATCC 13032] gi|140844363|dbj|BAF53362.1| hypothetical protein [Corynebacterium glutamicum R] Length = 419 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD R + +++ G WRV++ + D + AANALLK++EEP + + IL Sbjct: 118 IGVDAAREVIKAAAVSPVAGNWRVVIFENADRLTMQAANALLKTVEEPTESTVMILC--- 174 Query: 170 SPT-----ILSTIRSRC--LSIKFNSLSE 191 +PT I T+RSRC L I S++E Sbjct: 175 APTTDPRDIAITLRSRCRHLYIPTPSIAE 203 >gi|23336864|ref|ZP_00121999.1| COG2812: DNA polymerase III, gamma/tau subunits [Bifidobacterium longum DJO10A] Length = 185 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 17/173 (9%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF--VKQMASHA 88 G++ HA LF G +G GK + A V + +K P PC K +A+ Sbjct: 3 GKLTHAYLFSGPRGCGKTSSARILARCV----NCAKGPTSH----PCGECESCKDLATGG 54 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + G VD+ R +R +++ ++D + + N Sbjct: 55 PGSIDVVEIDAASHNG-------VDDARELRERAGFAPARDRYKIFILDEAHMVTQQGFN 107 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ALLK +EEPP+ V+FI + ++ TIRSR F + + + LE + Sbjct: 108 ALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVPQEVMGPYLETI 160 >gi|319891437|ref|YP_004148312.1| DNA polymerase III delta prime subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161133|gb|ADV04676.1| DNA polymerase III delta prime subunit [Staphylococcus pseudintermedius HKU10-03] Length = 310 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 23/173 (13%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E IE+ L++ Y + ++ HA LFEG+ T +A +L C + Sbjct: 2 EVIEQ-LTKAYHNQKLSHAYLFEGDDAEAMKTTAIAFAQLIL------------CQDEER 48 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + +H DF Y+ T + +++ + + ++ G ++V +I Sbjct: 49 CRLKVEGQNHP--DFQYVMTD--------ETTLKKEQVENLVHHMNQLPIEGDYKVYIIQ 98 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + + N++LK LEEPP+ + ++++ IL TI SRC + F +S Sbjct: 99 DFEKLTVQGENSILKFLEEPPKNTIAMIMTTKPEQILDTIHSRCQHVYFKPMS 151 >gi|78355224|ref|YP_386673.1| DNA polymerase III subunit delta' [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217629|gb|ABB36978.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 296 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 19/164 (11%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + +L + +G + LL EG + + +A + N + AP C Sbjct: 25 HDRVRGYLERL--AGSVPQVLLLEGGTPREREAVALWWAARL--NCAGTGAPCLSCA--- 77 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 Q A+ D YL + + I +D++R +R L G +RV+++ Sbjct: 78 ---VCTQFATRNNRDMFYLDGA--------QGSIKIDDVRAVRAVLG-EPPRGRYRVVVL 125 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + AANALLKSLEEP F+L++ +L T+ SR Sbjct: 126 AEAQSLGIEAANALLKSLEEPRPGTSFVLLAPQRERLLPTLVSR 169 >gi|311065082|ref|YP_003971808.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum PRL2010] gi|310867402|gb|ADP36771.1| DnaX DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum PRL2010] Length = 952 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 43/276 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + SG++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDSGKLTHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECASCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKI---MGWDSKRDFVKI-------AAY 218 F + + + LE+ LK+ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVAR--AIKILHYDCDKIISSYIDLIHIPRQEYAL 252 G +A A+ +L + + +I +D + I R AL Sbjct: 232 GVIAHDAAVALLGFTPEALIGEAVDAV-IARNGEAL 266 >gi|262384454|ref|ZP_06077588.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293747|gb|EEY81681.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 374 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 40/224 (17%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G E++++ L Q +G + HA LF + G G L YA ++ ++ Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCT---NRTD 57 Query: 69 VRMCNPDPCSPFVKQMASHALH-----------------DFL-----------------Y 94 C P ++A LH D+L + Sbjct: 58 TDACGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEW 117 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 L Y + G + +I E I + LSL +R++M+ + ++ AN LLK + Sbjct: 118 LDYI---EAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKII 174 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EEPP + + +++S IL TI+SR I + + + + Sbjct: 175 EEPPMRTVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNVM 218 >gi|222100780|ref|YP_002535348.1| DNA polymerase III, gamma subunit-related protein [Thermotoga neapolitana DSM 4359] gi|221573171|gb|ACM23983.1| DNA polymerase III, gamma subunit-related protein [Thermotoga neapolitana DSM 4359] Length = 350 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +DEIR I+ FL+ + + +++ + M + AANA LK+LEEPP+ + +L + Sbjct: 107 IGIDEIRSIKDFLNYSPELYSRKYVIVHDCERMTQQAANAFLKTLEEPPEYAVIVLNTRH 166 Query: 170 SPTILSTIRSRCLSI 184 +L TIRSR + Sbjct: 167 WHYLLPTIRSRVFRV 181 >gi|310659450|ref|YP_003937171.1| DNA polymerase III subunit delta' [Clostridium sticklandii DSM 519] gi|308826228|emb|CBH22266.1| putative DNA polymerase III, delta' subunit [Clostridium sticklandii] Length = 277 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 33/156 (21%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + HA +FEG + K + + +L + CS + F Sbjct: 29 LSHAFIFEGSKDSKKEVMATELSKRILDTEHL----------ENCSDY-----------F 67 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + + +N +T ++ I R Y A Y + + M NA LK Sbjct: 68 VVTNEKMNIETIRF--------INRDCYIKPFKAKKIY----IFEDAMKMTPVMQNAFLK 115 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +LEEPP VLFILI + +L T+RSRC+S F S Sbjct: 116 TLEEPPSDVLFILICENARGLLDTVRSRCISYYFPS 151 >gi|261749143|ref|YP_003256828.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497235|gb|ACX83685.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 574 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 46/238 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G D+ L R+ LLF G +G+GK T A + Sbjct: 14 YRPVRWEDVIGQMDVTTILRNSIEKNRLSQILLFLGPRGVGKNTCARILASEL------- 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 S+ +L++S+ + IR+IR++ Sbjct: 67 -----------------DSFSNVFEISGFLNHSVES---------ICETIRKIRFY---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++++I+ + ++++ N +LK+LEEPP VLFI + I S I SRC + Sbjct: 97 PKEGKYKILIINDFNFFSQDSFNIILKTLEEPPTHVLFIFCATEKNKINSII-SRCQVYE 155 Query: 186 FNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDCDKI 235 F +S +++ K E+ +I + + GS++ A+ K+ YD KI Sbjct: 156 FRFISLRDIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFYDQRKI 213 >gi|325687058|gb|EGD29081.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK72] Length = 296 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICGADRMHVNAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F +SL ++ L K+ +L + + + + A+ Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAEL-LAAYSQTQSEAESLAHN 203 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + A L +C++ + D + P Q + + ++ ++AD+ Q+Q F L Sbjct: 204 N---AFFELVSECERFVK---DFQNRPSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 KEI AL Sbjct: 256 YKEIATENGRQAL 268 >gi|255327658|ref|ZP_05368724.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296] gi|255295332|gb|EET74683.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296] Length = 957 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 19/181 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + L R++HA LF G +G GK T R L Q Sbjct: 7 RRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGK-TTSARILARCLNCAQ 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C ++++ + G VD R +R Sbjct: 66 GP--TPTPCGVC--DSC----RELSRDGGGSLDVIEMDAASHGG-------VDHARDLRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +L +++ +ID + R NALLK +EEPP+ V FI + +L TIRSR Sbjct: 111 RATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSR 170 Query: 181 C 181 Sbjct: 171 T 171 >gi|323465393|gb|ADX77546.1| DNA polymerase III delta prime subunit [Staphylococcus pseudintermedius ED99] Length = 310 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 23/173 (13%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E IE+ L++ Y + ++ HA LFEG+ T +A +L C + Sbjct: 2 EVIEQ-LTKAYHNQKLSHAYLFEGDDAEAMKTTAIAFAQLIL------------CQDEER 48 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 + +H DF Y+ T + +++ + + ++ G ++V +I Sbjct: 49 CRLKVEGQNHP--DFQYVMTD--------ETTLKKEQVENLVHHMNQLPIEGDYKVYIIQ 98 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 + + N++LK LEEPP+ + ++++ IL TI SRC + F +S Sbjct: 99 DFEKLTVQGENSILKFLEEPPKNTIAMIMTTKPEQILDTIHSRCQHVYFKPMS 151 >gi|313611408|gb|EFR86091.1| DNA polymerase III subunit delta' [Listeria monocytogenes FSL F2-208] Length = 330 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L++ + A + N Sbjct: 16 KIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLESTEAELACGKCAN------ 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 70 -CMRIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSL---LA 177 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV +A Sbjct: 178 SLTAAGISEQKARIYASITGSVEQA 202 >gi|283458781|ref|YP_003363423.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18] gi|283134838|dbj|BAI65603.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18] Length = 972 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 19/181 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + + L R++HA LF G +G GK T R L Q Sbjct: 33 RRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGK-TTSARILARCLNCAQ 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C D C ++++ + G VD R +R Sbjct: 92 GP--TPTPCGVC--DSC----RELSRDGGGSLDVIEMDAASHGG-------VDHARDLRE 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +L +++ +ID + R NALLK +EEPP+ V FI + +L TIRSR Sbjct: 137 RATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSR 196 Query: 181 C 181 Sbjct: 197 T 197 >gi|308235604|ref|ZP_07666341.1| DNA polymerase III subunits gamma and tau [Gardnerella vaginalis ATCC 14018] gi|311113932|ref|YP_003985153.1| DNA polymerase III, gamma/tau subunit DnaX [Gardnerella vaginalis ATCC 14019] gi|310945426|gb|ADP38130.1| DNA polymerase III, gamma/tau subunit DnaX [Gardnerella vaginalis ATCC 14019] Length = 771 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 13/178 (7%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + L + G++ HA LF G +G GK + A + Sbjct: 7 RRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAYLFSGPRGCGKTSSARILARCINCKEG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C K +A+ + G VD+ R +R Sbjct: 67 PTSKPCGKCQ------SCKDLATGGSGSIDVVEIDAASHNG-------VDDARELRERAG 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 114 FAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 >gi|326778287|ref|ZP_08237552.1| DNA polymerase III, subunits gamma and tau [Streptomyces cf. griseus XylebKG-1] gi|326658620|gb|EGE43466.1| DNA polymerase III, subunits gamma and tau [Streptomyces cf. griseus XylebKG-1] Length = 755 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 17/193 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 22 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 77 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 78 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 126 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 127 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 186 Query: 182 LSIKFNSLSENNL 194 F + L Sbjct: 187 HHYPFRLVPPGTL 199 >gi|289433516|ref|YP_003463388.1| DNA polymerase III, delta prime subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169760|emb|CBH26296.1| DNA polymerase III, delta prime subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 330 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 17/184 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L+ + A + N C+ Sbjct: 16 KIFSKSVRENRLSHGYLLEGASGTGKKRTALWLAKSLFCLEATETELACGKCAN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDRKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L +L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPAQILPTIQSRLQPVTFKSLTFDSLVDSLT 180 Query: 200 QLKI 203 ++ I Sbjct: 181 RIGI 184 >gi|167999753|ref|XP_001752581.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696112|gb|EDQ82452.1| predicted protein [Physcomitrella patens subsp. patens] Length = 366 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++VI+++ D +N + NA L LEEPP+ V+F+L + + I +T SRC F+ +S Sbjct: 10 YKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQKFHFSKVS 69 Query: 191 ENNLYKALEQL 201 E ++ K LE L Sbjct: 70 EADIVKRLEYL 80 >gi|327462079|gb|EGF08408.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK1057] gi|328946593|gb|EGG40731.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK1087] Length = 296 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F +SL ++ L K+ +L ++ + +A Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAELLAAYSQTQSEAASLAHNN 204 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + +C++ + D P Q + + ++ ++AD+ Q+Q F L Sbjct: 205 AFFELVS----ECERFVK---DFQTRPSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 KEI + AL Sbjct: 256 YKEIATESGRQAL 268 >gi|291438660|ref|ZP_06578050.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] gi|291341555|gb|EFE68511.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] Length = 440 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 18 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 73 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 74 CEEGP----TPTPCGTCQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPAQSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 183 HHYPFRLVPPGTLRDYLGEV 202 >gi|182437651|ref|YP_001825370.1| DNA polymerase III subunits gamma and tau [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466167|dbj|BAG20687.1| putative DNA polymerase III gamma subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 748 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 17/193 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNL 194 F + L Sbjct: 173 HHYPFRLVPPGTL 185 >gi|32266576|ref|NP_860608.1| DNA polymerase III subunits gamma and tau [Helicobacter hepaticus ATCC 51449] gi|32262627|gb|AAP77674.1| DNA polymerase III gamma and tau subunits DnaX [Helicobacter hepaticus ATCC 51449] Length = 531 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 19/178 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G I + LS S + HA LF G +G GK T R LQ C Sbjct: 1 MVGQNAISQTLSLALDSQHISHAYLFSGLRGSGK-TSSARIFARALQ-----------CE 48 Query: 74 PDPCSPFVKQMAS--HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 P S AS AL + ++ + + +D+I+++ + + Sbjct: 49 NGPTSTPCGNCASCVAALQNKHMDIIEMDAASSRG-----IDDIKKVIEQTKYRPSFARF 103 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++ +ID V +++ A NALLK+LEEPP+ V FIL + + +TI SR +F + Sbjct: 104 KIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQI 161 >gi|324991363|gb|EGC23296.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK353] Length = 296 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F +SL ++ L K+ +L ++ + +A Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAELLAAYSQTQSEAASLAHNN 204 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + +C++ + D P Q + + ++ ++AD+ Q+Q F L Sbjct: 205 AFFELVS----ECERFVK---DFQTRPSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 KEI + AL Sbjct: 256 YKEIATESGRQAL 268 >gi|88608682|ref|YP_506376.1| putative DNA polymerase III, gamma/tau subunit [Neorickettsia sennetsu str. Miyayama] gi|88600851|gb|ABD46319.1| putative DNA polymerase III, gamma/tau subunit [Neorickettsia sennetsu str. Miyayama] Length = 396 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 113/281 (40%), Gaps = 33/281 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G + + K LS + A+L G G GK T +L S Sbjct: 10 YRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRTS 69 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C D C + SH D L + + N R +I E + LS Sbjct: 70 ALPCLKC--DSCISILS--GSHP--DILEIDAASNTGVEDVRMLI---EGALYKPLLS-- 118 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ ++D V ++++A +ALLK LEEPPQ V F L + I +TI SRC + Sbjct: 119 ----KYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYR 174 Query: 186 FNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYDCDKII 236 + LS L + E+ +I F+ A GS+ A+ + LH KI Sbjct: 175 LSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKIT 234 Query: 237 SSYIDLIHIPRQEYALQKMQQI---ADELLSQDQKIAFDFL 274 +H+ R + L + ++ D +++ D K + L Sbjct: 235 ------VHVLRNKMGLVDLSEVYMLLDSIIAGDCKTSLGKL 269 >gi|330723506|gb|AEC45876.1| DNA polymerase III subunit delta' [Mycoplasma hyorhinis MCLD] Length = 297 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 YF S T +V++I +D N + NA+LK+LEEPP+ L IL + +L TIRS Sbjct: 72 YFSSFTQQDE--KVLLIKNIDLANTSILNAILKTLEEPPKNTLIILTTTHIDKVLPTIRS 129 Query: 180 RCLSIKF 186 RC F Sbjct: 130 RCQVFNF 136 >gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2] gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2] Length = 327 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 49/233 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + FD VY G +DI + L Y + H LLF G G+GK T Sbjct: 24 QTFDDVY-----GQDDIVERLRSYIERDDLPH-LLFAGPAGVGKTT-------------- 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL 122 + A R D +FL L+ S + G +D +R RI+ F Sbjct: 64 SATAIARAIYGDDWR-----------GNFLELNAS--DERG-------IDVVRDRIKNFA 103 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +RVI +D D + +A +AL +++E+ FIL + S I+ I+SRC Sbjct: 104 RSSFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCA 163 Query: 183 SIKFNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L ++ + + A E +++ + D + AA G + RAI L Sbjct: 164 VFRFSPLGDDAIAEQVRDIAAAEDIEVT--EDGLDALVYAAGGDMRRAINSLQ 214 >gi|301309076|ref|ZP_07215020.1| putative DNA polymerase III, delta prime subunit [Bacteroides sp. 20_3] gi|300832758|gb|EFK63384.1| putative DNA polymerase III, delta prime subunit [Bacteroides sp. 20_3] Length = 374 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 40/224 (17%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 +Y + + G E++++ L Q +G + HA LF + G G L YA ++ ++ Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCT---NRTD 57 Query: 69 VRMCNPDPCSPFVKQMASHALH-----------------DFL-----------------Y 94 C P ++A LH D+L + Sbjct: 58 TDACGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEW 117 Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 L Y + G + +I E I + LSL +R++++ + ++ AN LLK + Sbjct: 118 LDYI---EAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILIVWLPEKLHPTCANKLLKII 174 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 EEPP + + +++S IL TI+SR I + + + A+ Sbjct: 175 EEPPMRTVILMVSETPDLILGTIQSRAQHIHIRPIETDAIMNAM 218 >gi|114798398|ref|YP_759102.1| DNA polymerase III subunits gamma and tau [Hyphomonas neptunium ATCC 15444] gi|114738572|gb|ABI76697.1| DNA polymerase III, subunits gamma and tau [Hyphomonas neptunium ATCC 15444] Length = 578 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 19/238 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P + L G E + + LS + +GR+ H + G +G+GK T G Y Sbjct: 31 VLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNY 90 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 KA + DP + + D L L + R D Sbjct: 91 EPKADAKGKKGKAAGPSIHLDPPGEHCDAIMASRHPDVLELDAASRTGVADMR-----DL 145 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + RY + ++V +ID V ++ + NALLK+LEEPP + FI + + Sbjct: 146 LDSARY----GPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVP 201 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKIL 228 T+ SRC L L + L + + G + + + + AA GSV + +L Sbjct: 202 VTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLL 259 >gi|322372420|ref|ZP_08046956.1| DNA polymerase III, delta prime subunit [Streptococcus sp. C150] gi|321277462|gb|EFX54531.1| DNA polymerase III, delta prime subunit [Streptococcus sp. C150] Length = 291 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 17/160 (10%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E+FL Q R+ HA LF G+ G + + L D P C P Sbjct: 12 EEFL-QIIRENRLSHAYLFSGDFGSFDMAIWLAQSRFCLTPED--GLPCGNCRP------ 62 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + +A D L G+ +I D IR++ S ++ G +V +I D Sbjct: 63 CRLIAQGEFSDV-----KLVEPQGQ---LIKTDTIRQLTREFSQSSFEGQAQVFIIRDAD 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 M+ NAAN+LLK +EEP ++ L++ IL TI+SR Sbjct: 115 KMHVNAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSR 154 >gi|289644014|ref|ZP_06476114.1| DNA polymerase III, subunits gamma and tau [Frankia symbiont of Datisca glomerata] gi|289506191|gb|EFD27190.1| DNA polymerase III, subunits gamma and tau [Frankia symbiont of Datisca glomerata] Length = 940 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 15/176 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ G E + L Q + R+HHA LF G +G GK + A + + Sbjct: 9 YRPATFAQVVGQEHVTGALMQALRTTRIHHAYLFSGPRGCGKTSSARILAASLNCVDGPT 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P +C D C ++ S + + S+ L VD+ R +R Sbjct: 69 PQPCGVC--DQCV-SIRAGVSMDVTEIDAASHGL------------VDDARDLRERAFFA 113 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 114 PASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIATIRSRT 169 >gi|323351074|ref|ZP_08086731.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis VMC66] gi|322122798|gb|EFX94507.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis VMC66] gi|327490147|gb|EGF21935.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK1058] Length = 296 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 34/270 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LF G G F A +L F + + PCS + A Sbjct: 24 GRLSHAYLFTGAFG------SFEMA-QILSQSLFCENKQGVW---PCSS-CRSCRLIAEE 72 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DF ++ + P +I D +R + S + G +V +I D M+ NAAN+L Sbjct: 73 DFSDVTV-VRPVNN----IIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHVNAANSL 127 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLK 202 LK +EEP ++ L++ IL TIRSR F +SL ++ L K+ +L Sbjct: 128 LKVIEEPQSEIYIFLLTADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAELL 187 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADE 261 ++ + +A + + +C++ + D P Q + + ++ ++AD+ Sbjct: 188 AAYSQTQSEAASLAHNNAFFELVS----ECERFVK---DFQTRPSQAFLQVSRLAKLADD 240 Query: 262 LLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 Q+Q F L KEI + AL Sbjct: 241 KEKQEQ--IFKLLEVLFYKEIASESGRQAL 268 >gi|312868239|ref|ZP_07728439.1| putative DNA polymerase III, delta' subunit [Streptococcus parasanguinis F0405] gi|311095984|gb|EFQ54228.1| putative DNA polymerase III, delta' subunit [Streptococcus parasanguinis F0405] Length = 223 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR + S + G +V ++ D M+ NAAN+LLK +EEP ++ L++ Sbjct: 86 IIKTDRIRSLVQEFSQSGFEGSRQVFIVQDADKMHTNAANSLLKVMEEPQSEIYLFLLTS 145 Query: 169 ASPTILSTIRSRCLSIKF 186 IL TI+SR + F Sbjct: 146 DENLILPTIKSRAQQVHF 163 >gi|320547321|ref|ZP_08041612.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus equinus ATCC 9812] gi|320448019|gb|EFW88771.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus equinus ATCC 9812] Length = 309 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 18/166 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPF 80 K +Q S RM+HA LF G+ F +A ++ A R C N P Sbjct: 30 KEFNQILKSDRMNHAYLFSGDFA------SFDFALYL--------AKSRFCENLQEGRPC 75 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 K + + + TG+ VI D IR + S + G +V +I + Sbjct: 76 GKCRECQLIDANDFSDVKIVRPTGQ---VIKTDTIREMMRDFSRSGFEGKSQVFIIQDCE 132 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 133 KMHVNAANSLLKFIEEPQSSSYMILLTSDESKVLPTIKSRTQVFRF 178 >gi|125718520|ref|YP_001035653.1| DNA polymerase III subunit delta' [Streptococcus sanguinis SK36] gi|125498437|gb|ABN45103.1| DNA polymerase III, delta' subunit, putative [Streptococcus sanguinis SK36] Length = 296 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICGADRMHVNAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F SL ++ L K+ +L + + + + A+ Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTATLQQSLEQDGLIKSRAEL-LAAYSQTQSEAESLAHN 203 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + A L +C++ ++ D + P Q + + ++ ++AD+ Q+Q F L Sbjct: 204 N---AFFELVSECERFVN---DFQNRPSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 K+I + AL Sbjct: 256 YKDIATESGRQAL 268 >gi|217076323|ref|YP_002334039.1| DNA polymerase III, gamma subunit-related protein [Thermosipho africanus TCF52B] gi|217036176|gb|ACJ74698.1| DNA polymerase III, gamma subunit-related protein [Thermosipho africanus TCF52B] Length = 265 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D +R I+ FLS +++ G ++++I + M A NALLK+LEEPP L +L + Sbjct: 53 IKIDHVRNIQEFLSFSSDKGK-KIVVILNAEKMLPEAENALLKTLEEPPSYSLIVLTTTN 111 Query: 170 SPTILSTIRSR 180 + TIRSR Sbjct: 112 WKALYPTIRSR 122 >gi|289424559|ref|ZP_06426342.1| DNA polymerase III, delta' subunit [Propionibacterium acnes SK187] gi|289428921|ref|ZP_06430601.1| DNA polymerase III, delta' subunit [Propionibacterium acnes J165] gi|289155256|gb|EFD03938.1| DNA polymerase III, delta' subunit [Propionibacterium acnes SK187] gi|289157922|gb|EFD06145.1| DNA polymerase III, delta' subunit [Propionibacterium acnes J165] Length = 402 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 96 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 155 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ TIRSRC + + + + L + + + + + A G + RA + L Sbjct: 156 PEDVIVTIRSRCRRLHLATPRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLA 213 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 +D ++ + + +P + +L Q A++L++Q Sbjct: 214 WD-EEARARRNAIGELPTRLRSLGDCLQAAEDLVNQ 248 >gi|269793812|ref|YP_003313267.1| DNA polymerase III subunit gamma/tau [Sanguibacter keddieii DSM 10542] gi|269095997|gb|ACZ20433.1| DNA polymerase III, subunit gamma/tau [Sanguibacter keddieii DSM 10542] Length = 872 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 25/235 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG------FRYAGH 57 R + P + G E + L Q S R++HA LF G +G GK T A + Sbjct: 7 RRYRPENFAEVIGQEHVTDPLRQALRSDRVNHAYLFSGPRGCGKTTSARILARILNCAKN 66 Query: 58 VLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + P + P C + C+ ++A + G VD+ R Sbjct: 67 TPETP--TDTPCGEC--ESCT----ELARGGPGSLDVVEIDAASHGG-------VDDARE 111 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + + + +++ ++D + NALLK +EEPP+ + FI + ++ TI Sbjct: 112 LRERATFSPSRDRFKIFILDEAHMVTAQGFNALLKIVEEPPEYLKFIFATTEPDKVIGTI 171 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 RSR F ++ L L +L I V A GSV ++ +L Sbjct: 172 RSRTHHYPFRLVAPETLQTYLGELCTSENITVGGGVLPLVVRAGGGSVRDSLSVL 226 >gi|50841736|ref|YP_054963.1| DNA polymerase III subunit delta' [Propionibacterium acnes KPA171202] gi|50839338|gb|AAT82005.1| ATPase [Propionibacterium acnes KPA171202] Length = 399 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 93 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 152 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ TIRSRC + + + + L + + + + + A G + RA + L Sbjct: 153 PEDVIVTIRSRCRRLHLATPRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLA 210 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 +D ++ + + +P + +L Q A++L++Q Sbjct: 211 WD-EEARARRNAIGELPTRLRSLGDCLQAAEDLVNQ 245 >gi|329938776|ref|ZP_08288172.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045] gi|329302267|gb|EGG46159.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045] Length = 813 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGK-TTSARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGPT----PTPCGECQSCRDLARNGPGSLDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + F+ + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFVFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +Q I D V A GSV ++ ++ D++++ Sbjct: 173 HHYPFRLVPPGTLRDYLGEVCKQEDIPVEDGVLPLVVRAGAGSVRDSMSVM----DQLLA 228 Query: 238 SYID 241 D Sbjct: 229 GAGD 232 >gi|282853299|ref|ZP_06262636.1| DNA polymerase III, delta' subunit [Propionibacterium acnes J139] gi|282582752|gb|EFB88132.1| DNA polymerase III, delta' subunit [Propionibacterium acnes J139] Length = 402 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 96 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 155 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ TIRSRC + + + + L + + + + + A G + RA + L Sbjct: 156 PEDVIVTIRSRCRRLHLATPRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLA 213 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 +D ++ + + +P + +L Q A++L++Q Sbjct: 214 WD-EEARARRNAIGELPTRLRSLGDCLQAAEDLVNQ 248 >gi|154297295|ref|XP_001549075.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150843010|gb|EDN18203.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 536 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 31 GRMHHALLFEGEQGIGKAT--LGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G + +L+ G GIGK T LG + +N F V + + +A Sbjct: 123 GNDYSSLVMTGIGGIGKTTAVLGIAHKNKGRRNVFF----VHATDGESLRKAYLDLAMQV 178 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 H++L Y WR + ++I R + +L N ++++D +DGM N Sbjct: 179 GHEYLLKDYQGRDLYAIWRNNTSDEKIERFKNWLGDEENESA--LLILDDIDGMKEFGQN 236 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 L+ + P++ IL++ +P + +R C +IK N++ +++ LE+++ + + Sbjct: 237 PLV----DVPEQAKNILLTTRNPNV--RLRDDCKTIKLNNMEIDDIVSILEEVRSLEDED 290 Query: 209 KRDFVKIAAYG---SVARAI 225 DF+ + S+A+A+ Sbjct: 291 TEDFLDLNNSDILLSIAKAV 310 >gi|254445720|ref|ZP_05059196.1| hypothetical protein VDG1235_3967 [Verrucomicrobiae bacterium DG1235] gi|198260028|gb|EDY84336.1| hypothetical protein VDG1235_3967 [Verrucomicrobiae bacterium DG1235] Length = 314 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 ++L P K +I+VD+ R + + G +V M+ VD N +AANA LK+LEE Sbjct: 69 FTLRP--SKKSRIISVDDTREAIRKIQHSPQAGDRKVAMVFEVDRFNTSAANAFLKTLEE 126 Query: 157 PPQKVLFILISHASPTILSTIRSRC 181 PP +L++ ++L TIRSRC Sbjct: 127 PPLNTTILLLTTRPHSLLPTIRSRC 151 >gi|71747956|ref|XP_823033.1| replication factor C subunit 5 [Trypanosoma brucei TREU927] gi|70832701|gb|EAN78205.1| replication factor C, subunit 5, putative [Trypanosoma brucei] gi|261332892|emb|CBH15887.1| ATPase, putative [Trypanosoma brucei gambiense DAL972] Length = 349 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 4/104 (3%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANT---GYWRVIMIDPVDGMNRNAANALLKSL 154 +NP G V+ + IR I + L + T ++V++++ VD M R A +AL +++ Sbjct: 94 INPSDAGNHDRVVVMQMIREIAQTVPLQSGTPGAAKYKVVVLNEVDKMGRAAQHALRRTM 153 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 E+ +LI +++ +++ +RSRCL+++ S S+ N+ K + Sbjct: 154 EKYMATCRLVLICNSTSRLIAPLRSRCLAVRVPSHSQENITKVI 197 >gi|152964460|ref|YP_001360244.1| DNA polymerase III subunit delta' [Kineococcus radiotolerans SRS30216] gi|151358977|gb|ABS01980.1| DNA polymerase III, delta prime subunit [Kineococcus radiotolerans SRS30216] Length = 392 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + WRV++++ D +N + N LLK++EEPP + +++L + A +L TIRSR + Sbjct: 110 SVARWRVVVVEDADRLNPTSGNVLLKTIEEPPPQTVWLLCAPAVDDVLPTIRSRARHVPL 169 Query: 187 N 187 Sbjct: 170 R 170 >gi|251793226|ref|YP_003007954.1| DNA polymerase III subunit delta' [Aggregatibacter aphrophilus NJ8700] gi|247534621|gb|ACS97867.1| DNA polymerase III subunit delta' [Aggregatibacter aphrophilus NJ8700] Length = 356 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 19/151 (12%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 HHALL + G+G A L A ++ N D + C+ + Q SH Sbjct: 25 HHALLLRADVGLGVAQLCEALAQRLMCLTPNGDEACGQCHSCH-------LMQANSHP-- 75 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DF +++ N G +D+IR + + A +VI I+ + AANA+ Sbjct: 76 DFQHIAPIENKDIG-------IDQIRAMNEQATQHAQQNGNKVIYIEQAHRLTEAAANAI 128 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LK+LEEP FIL +L TI SRC Sbjct: 129 LKTLEEPRPNTYFILHCDIQTALLPTIYSRC 159 >gi|295129813|ref|YP_003580476.1| DNA polymerase III, delta' subunit [Propionibacterium acnes SK137] gi|291376904|gb|ADE00759.1| DNA polymerase III, delta' subunit [Propionibacterium acnes SK137] Length = 402 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 96 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 155 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ TIRSRC + + + + L + + + + + A G + RA + L Sbjct: 156 PEDVIVTIRSRCRRLHLATPRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLA 213 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ 265 +D ++ + + +P + +L Q A++L++Q Sbjct: 214 WD-EEARARRNAIGELPTRLRSLGDCLQAAEDLVNQ 248 >gi|119953539|ref|YP_945749.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135] gi|119862310|gb|AAX18078.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135] Length = 347 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 40/230 (17%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 IT++++R+I+ ++ + +VI I+ ++ +N N NALLK LEEPP + FIL + Sbjct: 144 ITINDVRKIKSWV--LSEKHKIKVIYINEIENLNFNVYNALLKILEEPPLNIYFILATRN 201 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 I TI SR KF RDF + + I + Sbjct: 202 KNKIPKTILSRLRLYKFRK-------------------ENRDF-------EIKQFKAIFN 235 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI----AFDFL-----IEFILK 280 + + Y D H +++++I + ++ + Q I F+FL + L+ Sbjct: 236 KNDELTTEEYFDSFHSEEHTKLKEEVKRILN-IIKEKQGIFNLDTFNFLKDENIFKLFLQ 294 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 E+ + LS L+ + ++ + +K + +S YN +++ +I +L+ Sbjct: 295 ELTNQLRHEFLSQNLDTNTYLKRLEY--LKYISKYSPYNQNKKLIIENLM 342 >gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi] gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi] Length = 326 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D VD M A AL +++E + F L + Sbjct: 89 IDVVRNKIKTFAQSKVTLPPGRHKIIILDEVDSMTEGAQQALRRTMEIYSKTTRFTLACN 148 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 S ++ I+SRC ++F+ LSE + K L Q+ K+ DS D + A G + +A Sbjct: 149 QSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQA 208 Query: 225 IKILH 229 + L Sbjct: 209 LNNLQ 213 >gi|50365490|ref|YP_053915.1| DNA polymerase III delta' subunit [Mesoplasma florum L1] gi|50364046|gb|AAT76031.1| DNA polymerase III delta' subunit [Mesoplasma florum L1] Length = 247 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E +EKF+ Q + +M ++L + + TL +A ++ + + + D Sbjct: 4 REALEKFVEQLK-NKKMFSSILISND---NQETLN-DFANNLSRTIFCENLGIEKDSCDN 58 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN-TGYWRVIM 135 C K+ + +L +F+ L G I +++ + SLT N ++V + Sbjct: 59 C----KRFENKSLSNFVVL--------GDGSLAINKNDVVELMQKFSLTTNEVNKFKVYV 106 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + +AN+LLK +EEPP+ + IL++ +L TI+SRC Sbjct: 107 LSNAENLKNESANSLLKFIEEPPENTIAILLTKNKSQVLPTIKSRC 152 >gi|154496114|ref|ZP_02034810.1| hypothetical protein BACCAP_00398 [Bacteroides capillosus ATCC 29799] gi|150274669|gb|EDN01733.1| hypothetical protein BACCAP_00398 [Bacteroides capillosus ATCC 29799] Length = 331 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 26/217 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G+ ++ L + HA + G G GK TL A + K P C Sbjct: 6 LAGNAALKGQLEAQTARRGLSHAYILSGPAGAGKRTLSRVLAAAFVCRGQGDK-PCLSC- 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD C K M ++ S+ GK I V ++R +R + N +V Sbjct: 64 PD-CR---KAMGG------IHPDISVIGDDGK---DINVAQVRALRSDAYVRPNEAGRKV 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++ MN +A NA+LK LEE P F+L++ + +L T+RSRC + + ++ Sbjct: 111 YILENAQTMNASAQNAMLKLLEEGPPYAAFLLLTDNAAALLQTVRSRCEVVTLSPVT--- 167 Query: 194 LYKALEQLKIMGWDSKR--DFVKIAAYGSVARAIKIL 228 Q + W S+R D + A G+ R +L Sbjct: 168 ------QAEAEAWLSRRYPDKSREAIVGAAQRCEGLL 198 >gi|262283116|ref|ZP_06060883.1| DNA-directed DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA] gi|262261368|gb|EEY80067.1| DNA-directed DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA] Length = 299 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 12/166 (7%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + IR + S + G +V +I + M+ NAAN+LLK +EEP +V L++ Sbjct: 86 IIKTERIRELLKNFSQSGVEGNEQVFIICEAEKMHLNAANSLLKMIEEPQSEVYIFLLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 IL TI+SR F +E+ L LE+ ++ ++ +AAY + L Sbjct: 146 DENLILPTIKSRTQVFHFPK-NEDYLVAKLEESGLLKDQAQL----LAAYSQTLEEAQNL 200 Query: 229 H-----YDCDKIISSYIDLIHIPRQEYALQ--KMQQIADELLSQDQ 267 +D ++ ++DL LQ ++ +AD+ QDQ Sbjct: 201 QTSKSFFDVTQVCQRFVDLCLAKNDLAFLQVARLSSLADDKEKQDQ 246 >gi|56460443|ref|YP_155724.1| DNA polymerase III, delta prime subunit, ATPase [Idiomarina loihiensis L2TR] gi|56179453|gb|AAV82175.1| DNA polymerase III, delta prime subunit, ATPase [Idiomarina loihiensis L2TR] Length = 286 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD +R ++ ++ TAN +V +I + M A NALLK LEEPP +++ + Sbjct: 85 IGVDTVRELQQNVTQTANQNGLKVAVILEAEKMTEQAGNALLKVLEEPPADTHWLVSTKD 144 Query: 170 SPTILSTIRSR--CLSIKFNSLSENN 193 + +L T+RSR LSI + + ++++ Sbjct: 145 AERLLPTLRSRMQWLSIAYPTTAQSD 170 >gi|312970569|ref|ZP_07784750.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1827-70] gi|310337218|gb|EFQ02356.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1827-70] Length = 569 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL + Sbjct: 44 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 103 Query: 189 LSENNLYKALEQL 201 L + LE + Sbjct: 104 LDVEQIRHQLEHI 116 >gi|313639888|gb|EFS04594.1| DNA polymerase III subunit delta' [Listeria seeligeri FSL S4-171] Length = 345 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 17/184 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L+ + A N C+ Sbjct: 31 KIFSKSVRENRLSHGYLLEGASGTGKKRTALWLAQSLFCLEATETELACGECAN---CT- 86 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 87 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDRKVVIIYDA 135 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L +L Sbjct: 136 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPAQILPTIQSRLQPVTFKSLTFDSLVDSLT 195 Query: 200 QLKI 203 ++ I Sbjct: 196 RIGI 199 >gi|315121980|ref|YP_004062469.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495382|gb|ADR51981.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 363 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 31/236 (13%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN------PD 75 K L+ + SGR+ + + G +GIGK T A + ++ ++ A V + + Sbjct: 3 KTLANAFKSGRIAQSYMLSGTRGIGKTTT----ARIIARSLNYKTADVDIPTVEFEGFGE 58 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 C ++ +H D + L + + ++D++R I + + ++V + Sbjct: 59 HCQSIIQ--GNHV--DVVELDAASH---------TSIDDVREIIEQMYYKPISARFKVYI 105 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL- 194 +D V ++ A N LLK+LEEPP V FI + + T+ SRC + +S NL Sbjct: 106 MDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLHRISIGNLI 165 Query: 195 ---YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSYIDLI 243 K L Q I + A+ GSV + +L DKI +S + L+ Sbjct: 166 GLFTKILRQESIESDPESIAMIARASDGSVRDGLSLLDQAIARCGDKIEASTVRLM 221 >gi|322491267|emb|CBZ26533.1| putative replication factor C, subunit 5 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 351 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 19/175 (10%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LLF G G GK T H + P S VR+ + Q++ + D LS Sbjct: 37 LLFYGPSGSGKKTRAMAML-HEIYGP--SVYSVRLEHKS------VQVSDSKVVDIATLS 87 Query: 97 ----YSLNPK-TGKWRTVITVDEIRRIRYFLSL--TANTGY---WRVIMIDPVDGMNRNA 146 +NP G + VI + IR I + L TAN ++V++++ VD M+R+A Sbjct: 88 SPHHIDINPSDAGNYDRVIVMQMIREIAQTVPLHTTANNRKNVPYKVVVLNEVDKMSRSA 147 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +AL +++E+ L+ +++ ++ +RSRCL I+ S S++NL A++++ Sbjct: 148 QHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHSKDNLKLAVQRV 202 >gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis] gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis] Length = 329 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 43/305 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H DI + ++ R+ H LLF G G GK + A + Sbjct: 25 LISHTDIINTIQRFINEERLPH-LLFYGPPGTGKTSTILAVAKQLY-------------- 69 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ S L L+ S + G R I + + + T +++ Sbjct: 70 PD------KQFGSMVLE----LNASDDRGIGIVRGDI-------LSFASTRTIFKSGFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS + Sbjct: 113 VILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQ 172 Query: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + LE + ++ D R + A G + + + IL D +++ + Sbjct: 173 MLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMAYSVVNEDHVYLCTGQ 232 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIYFSL 308 + I D +L++D A+ +++ K+ K AL LEE + ++ F Sbjct: 233 PQPTDIGNIVDWMLNKDFTTAYTNILKL------KTLKGLALQDILEETHSYVHRVDFPA 286 Query: 309 VKRVH 313 R+H Sbjct: 287 KIRIH 291 >gi|182626029|ref|ZP_02953792.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens D str. JGS1721] gi|177908736|gb|EDT71247.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens D str. JGS1721] Length = 307 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 32/184 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + S+ + HA L GE+GIGK+ L +A +L P + V + + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEEGIGKSLLADEFAYKILGIPS-QREHVDIVH 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + AS VD +R I + +V Sbjct: 60 ------YKSEKASFG-----------------------VDLVRNIIAEANKKPYECDRKV 90 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--E 191 I+I + + A NALLK++EEP + I++S +IL TIRSRC + LS E Sbjct: 91 IIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEE 150 Query: 192 NNLY 195 NLY Sbjct: 151 INLY 154 >gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] Length = 622 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + SGR+ A + G +G+GK T A + Sbjct: 43 VLARKYRPQNFTDLIGQEAMVRTLRNAFSSGRIAQAYILTGVRGVGKTTTARILARALNY 102 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P A + + + D + + + N R +I E R R Sbjct: 103 EPMDGSAGGPSLDLSVMGKQCRDIIESRHVDVMEMDAASNTSINDIREII---ESARYRP 159 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SR Sbjct: 160 VMA------RYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 213 Query: 181 C 181 C Sbjct: 214 C 214 >gi|256398119|ref|YP_003119683.1| DNA polymerase III subunits gamma and tau [Catenulispora acidiphila DSM 44928] gi|256364345|gb|ACU77842.1| DNA polymerase III, subunits gamma and tau [Catenulispora acidiphila DSM 44928] Length = 863 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 33/237 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + L Q +GR++HA LF G +G GK T R L + Sbjct: 24 RRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAYLFSGPRGCGK-TTSARILARCL---N 79 Query: 64 FSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC ++A+ + G VD+ R +R Sbjct: 80 CEQGPT----PTPCGTCRSCVELANGGSGSIDVIEIDAASHGG-------VDDARDLRER 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP + FI + ++ TIRSR Sbjct: 129 AFFAPAASRFKIYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSRT 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKI----------AAYGSVARAIKIL 228 F + L + L + + R+ +K+ A GS A+ +L Sbjct: 189 HHYPFRLIPPGVLREHLNDI------TAREGIKVEPEVLPLVVRAGAGSARDAMSVL 239 >gi|207110059|ref|ZP_03244221.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori HPKX_438_CA4C1] Length = 133 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +D++R + + G +++ +ID V A NALLK+LEEPP V F+L + + Sbjct: 39 IDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 98 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + +TI SR +F + EN++ L+ + Sbjct: 99 KLPATILSRTQHFRFKKIPENSVISHLKTI 128 >gi|326329503|ref|ZP_08195827.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] gi|325952829|gb|EGD44845.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] Length = 667 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 17/179 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L R++HA LF G +G GK T R L + Sbjct: 115 RRYRPETFAEVIGQDHVTGPLRNALAGNRVNHAYLFSGPRGCGKTT-SARILARAL---N 170 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 KAP+ DPC + +A + G VD+ R +R Sbjct: 171 CEKAPIA----DPCGECDSCRDLARGGPGSIDVIEIDAASHGG-------VDDARDLREK 219 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 220 AFFAPVKSRYKVYIIDEAHMVSTQGFNALLKLVEEPPEHLRFIFATTEPEKVIPTIRSR 278 >gi|313621136|gb|EFR92195.1| DNA polymerase III subunit delta' [Listeria innocua FSL S4-378] Length = 330 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG +G GK A + L+ + + A C C+ Sbjct: 16 KIFSKSVRENRLSHGYLLEGSRGTGKKRTALWLAQSLFCLERTETNLA----CGE--CAN 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ +ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 70 CIR-IASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L + Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLVAS-- 178 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 179 -LTAAGISEQKARIYASITGSVEEA 202 >gi|283768610|ref|ZP_06341522.1| conserved domain protein [Bulleidia extructa W1219] gi|283105002|gb|EFC06374.1| conserved domain protein [Bulleidia extructa W1219] Length = 318 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%) Query: 109 VITVDEIRRIRYFLSLTA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 I+ EI ++ + S TA N RV ++ ++ + +A N+LLK LEEP + V+ IL Sbjct: 78 AISKKEIDELQNYFSKTAVENAKGRRVCFLEHMETASLSAQNSLLKFLEEPSKGVVIILS 137 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 +IL T+ SRC+ I F S+++ L L+Q +G+ Sbjct: 138 VPKESSILPTLVSRCIPIYFQSVNQKEL---LQQALKLGY 174 >gi|238027002|ref|YP_002911233.1| DNA polymerase III subunit delta' [Burkholderia glumae BGR1] gi|237876196|gb|ACR28529.1| DNA polymerase III, delta prime subunit [Burkholderia glumae BGR1] Length = 342 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 27/190 (14%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPDPCS-------PFVK 82 HALL G+ GIGK R+A H+ Q +P + P C C+ P + Sbjct: 22 HALLLHGQAGIGK----LRFAQHLAQGLLCESPQGNGEPCGTC--PACTWFGQGNHPDYR 75 Query: 83 QMASHALHDFLYLSYSLNPKTG------KWRTV---ITVDEIRRIRYFLSLTANTGYWRV 133 + AL + + PK K RT I ++++R + F+ + ++ G RV Sbjct: 76 IVLPEALAGEAPGAAAEEPKADADEGGKKTRTPSKEIKIEQVRGLLDFVGVGSHRGGARV 135 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++ P + +N AANALLK+LEEPP V+F+L+S +L TI SRC S Sbjct: 136 VVLYPAEALNVAAANALLKTLEEPPAGVVFLLVSARLDRLLPTIVSRCRQWPMTVPSHAA 195 Query: 194 LYKALEQLKI 203 LE ++ Sbjct: 196 AVAWLEAQQV 205 >gi|212696416|ref|ZP_03304544.1| hypothetical protein ANHYDRO_00954 [Anaerococcus hydrogenalis DSM 7454] gi|212676588|gb|EEB36195.1| hypothetical protein ANHYDRO_00954 [Anaerococcus hydrogenalis DSM 7454] Length = 275 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++ +R + + L + G ++ +ID + ++ +NALLKS+E+ +L I ++ Sbjct: 66 ISIKTVRLLINDMYLRPSNGKIKIYVIDESERLSLEGSNALLKSIEDAKDYILIIFTTNN 125 Query: 170 SPTILSTIRSRCLSIKFNSLSEN 192 S ++L TIRSRC I F S EN Sbjct: 126 SFSLLKTIRSRCQIISFKSEKEN 148 >gi|323465903|gb|ADX69590.1| DNA polymerase III, delta subunit [Lactobacillus helveticus H10] Length = 257 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ+ S D L + + + + +D++R ++ L+ + R Sbjct: 29 PDGTCQNCKQILSGNHPDVLLVE-------PEGKQTLGIDQVRPLKEELAKSPVESSRRF 81 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 I+ V M +AAN LL LEEP V+ ILI++ S IL T+RSR I F++ Sbjct: 82 FFINEVQKMTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTVRSRTQIINFDN 136 >gi|239981077|ref|ZP_04703601.1| DNA polymerase III subunit delta' [Streptomyces albus J1074] gi|291452944|ref|ZP_06592334.1| DNA polymerase III subunit delta [Streptomyces albus J1074] gi|291355893|gb|EFE82795.1| DNA polymerase III subunit delta [Streptomyces albus J1074] Length = 403 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 13/119 (10%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I V E R + ++ G W+VI+++ D + A N LLK++EEP + +++L + + Sbjct: 111 IGVKETRDLVRRSQMSPANGRWQVIVLEDADRLTEGAGNVLLKAVEEPASRTVWLLCAPS 170 Query: 170 SPTILSTIRSRC--LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 +L TIRSR LS++ ++ A+ + + +RD V A SVAR+ + Sbjct: 171 LEDVLPTIRSRSRHLSLRTPPVA------AVADILV-----RRDGVDPALAASVARSTQ 218 >gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] Length = 623 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 43/247 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + L+ + + R+ A + G +G+GK T G Y Sbjct: 32 VLARKYRPQTFDDLIGQGAMVRTLANAFSANRIPQAWMLTGVRGVGKTTTARILARGLNY 91 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASH------ALH-DFLYLSYSLNPKTGK 105 VR PD P V ++ H + H D L + + + TG Sbjct: 92 --------------VRTGQPD-TGPTVSMPELGQHCQAIMESRHMDVLEMDAASH--TG- 133 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 +D++R I + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 134 ------IDDVRGIIDGIRYAPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVF 187 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSV 221 + + TI SRC + + L L+++ + D V AA GSV Sbjct: 188 ATTEIRKVPVTILSRCQRFDLRRVEADVLSAHLKKICAAEGVEAEDEALAAVTRAAEGSV 247 Query: 222 ARAIKIL 228 A+ +L Sbjct: 248 RDALSLL 254 >gi|75812737|ref|YP_320354.1| ATPase [Anabaena variabilis ATCC 29413] gi|75705493|gb|ABA25165.1| ATPase [Anabaena variabilis ATCC 29413] Length = 429 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 25/225 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E I + L ++ A LF G +G GK + A + N S Sbjct: 9 YRPQTLSEVIGQEHIVRTLINAIALQKIAPAYLFSGPKGTGKTSTARIIAKSL--NCQSS 66 Query: 66 KAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P PC K + + + D L + N V+ IR + + Sbjct: 67 NEPTT----KPCGECNSCKGITASSSVDVTELDAASNSG---------VELIRELISTIQ 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID ++ + ALLK++E PP+ V+FI + + TI SRC Sbjct: 114 FAPVEGRFKIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQK 173 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIK 226 F + + + LEQ+ S ++ + IA A +VA+A K Sbjct: 174 FDFKRVPVSLVASYLEQI------SHQESINIAPSAVTAVAKANK 212 >gi|15807323|ref|NP_296053.1| DNA polymerase III subunit [Deinococcus radiodurans R1] gi|6460143|gb|AAF11878.1|AE002064_9 DNA polymerase III subunit, putative [Deinococcus radiodurans R1] Length = 321 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 31/227 (13%) Query: 35 HALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHD 91 +ALL G +GK L + A H P R + C P + + + A D Sbjct: 30 NALLLSGPARVGKLDLAYAIAAQHNCSGP-------RGMYGEACGQCPSCRALQAGAHPD 82 Query: 92 FLYLSYSLNPKTGKW--RTVITVDEIRRIR-----------YFLSLTANTGYWRVIMIDP 138 L L TGK + +I + + R FL + T RV+++ Sbjct: 83 VLRLEPRATTSTGKAARKRIIPIGAVLESRDTGREYETHVYEFLEVR-PTFERRVVIVAG 141 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + +N AANALLK +EEPP + LF+ ++ ++L TI SR + S+ + +AL Sbjct: 142 AEYLNPQAANALLKLVEEPPHRALFLFLAEDLRSVLPTIVSRSARLSVVPASDTAMSRAL 201 Query: 199 EQLKIMGWDSKRDFVKIAAYG----SVARAIKILHYDCDKIISSYID 241 Q G ++ + + AA S A A++ D + ++ D Sbjct: 202 IQ---SGQEADEELLAFAAGRARVLSEAEAVRAALADARTLTTALED 245 >gi|304372906|ref|YP_003856115.1| DNA polymerase III subunit delta [Mycoplasma hyorhinis HUB-1] gi|304309097|gb|ADM21577.1| DNA polymerase III subunit delta [Mycoplasma hyorhinis HUB-1] Length = 297 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V++I +D N + NA+LK+LEEPP+ L IL + +L TIRSRC F Sbjct: 82 KVLLIKNIDLANTSILNAILKTLEEPPKNTLIILTTTHIDKVLPTIRSRCQVFNF 136 >gi|38232954|ref|NP_938721.1| DNA polymerase III subunit delta' [Corynebacterium diphtheriae NCTC 13129] gi|38199212|emb|CAE48840.1| Putative DNA polymerase III, delta' subunit [Corynebacterium diphtheriae] Length = 421 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%) Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS-PT-ILSTIRSR 180 G WRV+++D D + +ANALLK++EEPP + IL + ++ PT I+ T+RSR Sbjct: 137 TVGQWRVVILDNADRLTPESANALLKTVEEPPAHTVIILCAPSTDPTDIIPTLRSR 192 >gi|224070732|ref|XP_002303217.1| predicted protein [Populus trichocarpa] gi|222840649|gb|EEE78196.1| predicted protein [Populus trichocarpa] Length = 1241 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 39/213 (18%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVL 59 + + + P + L G + + L GR+ LF+G +G GK + F A + + Sbjct: 470 LSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASALNCM 529 Query: 60 QNPDFSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE---- 114 + R CN + +GK R + VD Sbjct: 530 STEEIKPCGCCRECN--------------------------DSSSGKTRDLWEVDGTDKK 563 Query: 115 -IRRIRYFLSLTA-----NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I ++RY L + + ++V +ID + A LK LEEPPQ+V+FI ++ Sbjct: 564 GIDKVRYLLKKISRGPPLGSSRYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTT 623 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + T++SRC F+ + + ++ L ++ Sbjct: 624 DPDNVPRTVQSRCQKYLFSKIKDRDIVARLRKI 656 >gi|256830781|ref|YP_003159509.1| DNA polymerase III, delta prime subunit, putative [Desulfomicrobium baculatum DSM 4028] gi|256579957|gb|ACU91093.1| DNA polymerase III, delta prime subunit, putative [Desulfomicrobium baculatum DSM 4028] Length = 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 20/148 (13%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDF 92 +LL EG + LG +A ++ R P PC Q+ A D Sbjct: 28 SSLLLEGGNAAERLALGLFWAARLM---------CREAAP-PCGKCRICLQIEGDACRDL 77 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 + LN G I+VD +R +R L RV+++ + AANALLK Sbjct: 78 ----FLLNGAEGS----ISVDTVREVRAVLGDPPAGRGPRVVILAEAQALGDGAANALLK 129 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSR 180 SLEEP +F+L++ + +L T+ SR Sbjct: 130 SLEEPSPGNVFVLLAPSREILLPTLVSR 157 >gi|288905946|ref|YP_003431168.1| DNA polymerase III delta' subunit [Streptococcus gallolyticus UCN34] gi|288732672|emb|CBI14244.1| DNA polymerase III delta' subunit [Streptococcus gallolyticus UCN34] Length = 291 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 18/168 (10%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCS 78 + K +Q S RM+HA LF G+ F +A ++ A R C N Sbjct: 10 LSKEFNQILKSDRMNHAYLFSGDFA------SFDFALYL--------AKSRFCENLQDGL 55 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 P K + + + + +G+ VI D IR + S + G +V +I Sbjct: 56 PCGKCRECQLIAENEFSDVKIVKPSGQ---VIKTDTIRELMRDFSRSGFEGKSQVFIIQD 112 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 113 CEKMHVNAANSLLKFIEEPQSSSYMILLTSDENKVLPTIKSRTQIFRF 160 >gi|325694990|gb|EGD36894.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK150] Length = 296 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 34/270 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 GR+ HA LF G G F A +L F + + C + +A Sbjct: 24 GRLSHAYLFTGAFG------SFEMA-QILSQSLFCENKQGVWPCQSCRS-CRLIAEEDFS 75 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D + + N +I D +R + S + G +V +I D M+ NAAN+L Sbjct: 76 DVTVVRPANN--------IIKTDRVRELVRNFSQSGLEGSRQVFIICGADRMHVNAANSL 127 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLK 202 LK +EEP ++ L++ IL TIRSR F SL ++ L K+ +L Sbjct: 128 LKVIEEPQSEIYIFLLTADEQLILPTIRSRTQVYHFLKNTATLQQSLEQDGLIKSRAEL- 186 Query: 203 IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADE 261 + + + + A+ + A L +C++ + D + P Q + + ++ ++AD+ Sbjct: 187 LAAYSHTQSEAESLAHNN---AFFELVSECERFVK---DFQNRPSQAFLQVSRLAKLADD 240 Query: 262 LLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 Q+Q F L K+I + AL Sbjct: 241 KEKQEQ--VFKLLEVLFYKDIATESGRQAL 268 >gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex] Length = 330 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 40/222 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + + C Sbjct: 21 LISHQDIISTIRKFINENRLPH-LLFYGPPGTGKTS------------------TILACA 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA--NTGYW 131 + +P +Q S L LN + V+ +I F S + +G+ Sbjct: 62 KELYTP--QQFNSMVLE--------LNASDDRGINVVR----NQIMSFASTRSIFKSGF- 106 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M +A NAL + +E+ + V F LI + I+ I+SRC +F L Sbjct: 107 KLIILDEADAMTNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKS 166 Query: 192 NNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + +E+ KI + R + A+G + R I IL Sbjct: 167 DQILPRMNYVIEEEKIKVTEDGRQALLSLAHGDMRRVINILQ 208 >gi|310288215|ref|YP_003939474.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum S17] gi|309252152|gb|ADO53900.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum S17] Length = 952 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 108/276 (39%), Gaps = 43/276 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + SG++ HA LF G +G GK T R + + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDSGKLTHAYLFSGPRGCGK-TSSARILARCI---N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P PC K +A+ + G VD+ R +R Sbjct: 63 CVKGPTSH----PCGECASCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKI---MGWDSKRDFVKI-------AAY 218 F + + + LE+ LK+ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVAR--AIKILHYDCDKIISSYIDLIHIPRQEYAL 252 G +A A+ +L + + +I +D + I R AL Sbjct: 232 GVIAHDAAVALLGFTPEALIGEAVDAV-IARNGEAL 266 >gi|13548729|gb|AAK29470.1|AF225904_2 DNA polymerase III-like protein [Western X phytoplasma] Length = 202 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMC 72 + G E + K L ++HH L G +G+GK TL A + QNP C Sbjct: 18 MVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAKAINCQNPQGQDC----C 73 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N V Q A+ + + SY+ VDEIR ++ + + ++ Sbjct: 74 NECEFCLVVHQKANLDVIEIDGASYN------------GVDEIRELKDTVQYKPHLLKYK 121 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V +ID V ++ NA NALLK LEEPP V+FILI+ I TI SR +L++ Sbjct: 122 VYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTDE 181 Query: 193 NLYKAL----EQLKIMGWDS 208 + L E+ KI+ D Sbjct: 182 EIKTKLNPIVEEEKILITDE 201 >gi|320009595|gb|ADW04445.1| DNA polymerase III, subunits gamma and tau [Streptomyces flavogriseus ATCC 33331] Length = 761 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 16 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 71 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 72 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 181 HHYPFRLVPPGTLRGYLAEV 200 >gi|313635227|gb|EFS01529.1| DNA polymerase III subunit delta' [Listeria seeligeri FSL N1-067] Length = 330 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 17/184 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG G GK A + L+ + A N C+ Sbjct: 16 KIFSKSVRENRLSHGYLLEGASGTGKKRTALWLAQSLFCLEATETELACGECAN---CT- 71 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 72 ---RIASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDRKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L +L Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPAQILPTIQSRLQPVTFKSLTFDSLVDSLT 180 Query: 200 QLKI 203 ++ I Sbjct: 181 RIGI 184 >gi|221134524|ref|ZP_03560829.1| DNA polymerase III subunit delta [Glaciecola sp. HTCC2999] Length = 298 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 17/153 (11%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 + +HHA+L + G+GK + A +L + F A C S + Q +SH Sbjct: 21 ANTLHHAILLHAKPGMGKHAYVHQLADDLLCHHLKFGHA-CGQCQ----SCLLNQASSHP 75 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 D ++ I+V+EIR L A ++++I+ D M +AAN Sbjct: 76 --DRYVIASDKQ---------ISVNEIREALTKLQEHAQLRQRKILIIEHADTMTESAAN 124 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ALLK+LEEP +L +L TI SRC Sbjct: 125 ALLKTLEEPSLNTFLLLTVSDIQRLLPTILSRC 157 >gi|110003917|emb|CAK98257.1| hypothetical dna polymerase III delta prime subunit protein [Spiroplasma citri] Length = 278 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 104 GKWRTVITVDEIRRIRYFLSLTA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 G + T I + I++I + +A TG +V +I+ +D + AAN+LLK LEEP Q Sbjct: 80 GDFETTIKKEAIQKIIQTFNYSALEQTGI-KVYVINGIDLLTLEAANSLLKFLEEPSQNT 138 Query: 162 LFILISHASPTILSTIRSRCLSI 184 L++ ++ TI+SRCL+I Sbjct: 139 YAFLLTTNKTNVIDTIKSRCLNI 161 >gi|118602263|ref|YP_903478.1| DNA polymerase III, delta prime subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567202|gb|ABL02007.1| DNA polymerase III, delta prime subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 335 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 7/154 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 RM HALL G + IGK L + G +L++ +R N + + + Sbjct: 21 RMPHALLITGVEKIGKFELMQQIVGVLLKD----DVIIRKDNIREDLDYSVLIRHSNYPN 76 Query: 92 FLYL-SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 +Y S + K+ I ++++R L+ TA+ VI D MN +AAN L Sbjct: 77 MVYCRSGEMVEKSKNRSKNIRIEQVRVFCDALNKTADQLQIGVIFYG--DQMNMSAANGL 134 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 LK+LEEP + L I+++H + T+ SRC +I Sbjct: 135 LKTLEEPRKNTLIIILAHHVENLPDTVVSRCQNI 168 >gi|313625548|gb|EFR95258.1| DNA polymerase III subunit delta' [Listeria innocua FSL J1-023] Length = 322 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG +G GK A + L+ + + A C C+ Sbjct: 8 KIFSKSVRENRLSHGYLLEGSRGTGKKRTALWLAQSLFCLERTETNLA----CGE--CAN 61 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ +ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 62 CIR-IASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 112 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L +L Sbjct: 113 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLVASL 171 >gi|301629102|ref|XP_002943687.1| PREDICTED: hypothetical protein LOC100490174 [Xenopus (Silurana) tropicalis] Length = 1629 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VDE++ + G ++V MID V + A NA+LK+LEEPP+ + F+L + Sbjct: 1019 VDEVQGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 1078 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + T+ SRCL ++ + + L ++ Sbjct: 1079 KVPVTVLSRCLQFNLRPMAPETVLEHLARV 1108 >gi|323526016|ref|YP_004228169.1| DNA polymerase III subunit delta' [Burkholderia sp. CCGE1001] gi|323383018|gb|ADX55109.1| DNA polymerase III, delta prime subunit [Burkholderia sp. CCGE1001] Length = 344 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 31/175 (17%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS------------ 78 G+ HALL G+ GIGK R+A H+ Q R N +PC Sbjct: 18 GQWPHALLLHGQAGIGK----LRFAQHLAQGLLCED---RRENGEPCGACVACNWFAQGN 70 Query: 79 -PFVKQMASHALHDFLYLSYSLNPKTGKW-----------RTVITVDEIRRIRYFLSLTA 126 P + + AL L K K I +++IR + F+ + + Sbjct: 71 HPDYRIVVPEALAAEAGLGNGAEDKAEKADGDEGKKTRAPSKEIRIEQIRGLLDFVGVGS 130 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 131 HRGGARVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 185 >gi|322374521|ref|ZP_08049035.1| DNA polymerase III, delta prime subunit [Streptococcus sp. C300] gi|321280021|gb|EFX57060.1| DNA polymerase III, delta prime subunit [Streptococcus sp. C300] Length = 296 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESRQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 IL TIRSR FN E L LEQ Sbjct: 146 DEEKILPTIRSRTQIFHFNK-QEEKLIHQLEQ 176 >gi|118594885|ref|ZP_01552232.1| DNA polymerase III subunit delta [Methylophilales bacterium HTCC2181] gi|118440663|gb|EAV47290.1| DNA polymerase III subunit delta [Methylophilales bacterium HTCC2181] Length = 318 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM-IDPVDGMNR 144 +H+ DF + N T K +I V IR ++ F LT++ + + I I MN+ Sbjct: 68 NHSHPDFFSVDEEGNETTDK---LIPVKVIRSLKNFFELTSHQSHGKKIAYIARAHRMNK 124 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++NALLK +EEPP L IL + I+ T++SR Sbjct: 125 ESSNALLKIVEEPPNDCLIILSTSQLDAIIPTVKSR 160 >gi|21222469|ref|NP_628248.1| DNA polymerase III subunits gamma and tau [Streptomyces coelicolor A3(2)] gi|5918469|emb|CAB56347.1| DNA polymerase III subunit gamma [Streptomyces coelicolor A3(2)] Length = 784 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 173 HHYPFRLVPPGTLRDYLAEV 192 >gi|331266593|ref|YP_004326223.1| DNA polymerase III, delta prime subunit [Streptococcus oralis Uo5] gi|326683265|emb|CBZ00883.1| DNA polymerase III, delta prime subunit [Streptococcus oralis Uo5] Length = 296 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S T +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQTGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 IL TIRSR F E L LEQ Sbjct: 146 DEEKILPTIRSRTQIFNFKK-QEEKLIHQLEQ 176 >gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera] Length = 785 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ LF+G +G GK + + + Sbjct: 449 LSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCL 508 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C CS F+ + H + K G + R+RY Sbjct: 509 AVGETKPCGICRE--CSDFISGKSRH------FREIDGTNKKG----------MDRMRYL 550 Query: 122 L-----SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 L + ++V +ID + A LK LEEPP +V+FI I+ + T Sbjct: 551 LKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRT 610 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRC FN + E ++ L ++ Sbjct: 611 VLSRCQKYLFNKIKEGDIVARLRKI 635 >gi|310779624|ref|YP_003967957.1| ATPase and helicase subunits involved in DNA replication [Ilyobacter polytropus DSM 2926] gi|309748947|gb|ADO83609.1| ATPase and helicase subunits involved in DNA replication [Ilyobacter polytropus DSM 2926] Length = 303 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 28/210 (13%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T I + ++R + Y S ++ G +V ++ V+ + AANALLK +EEP + FIL S Sbjct: 83 TGIKISQVRELIYKASSSSYEGRKKVFILKDVENLRVEAANALLKIIEEPGEGTFFILNS 142 Query: 168 HA---SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD---------SKRDFVKI 215 H+ PTI+S RS + IK + E ++ K E+ + D S D + Sbjct: 143 HSLNIIPTIIS--RSTAVHIKKKTPEEMDVTK--EEYEFFFGDVGQIEKYKKSNTDLSRP 198 Query: 216 AAYGSVARAIKILHYDCDKIISSYID----LIHIPRQEYALQKMQQI--ADELL--SQDQ 267 Y + IK +Y D S I+ L R L+ +++I A+E+ S+++ Sbjct: 199 VPYTEIGLHIK--NYIKDGETESKINIQKSLRDFMRNRKFLENIEKIYFAEEIYRGSRER 256 Query: 268 KIAFDFLIEFIL--KEICKSAKAAALSGQL 295 IA + + E IL ++ K+ K + G L Sbjct: 257 SIAENIMYESILLNDDLSKTEKLLYIKGML 286 >gi|18395372|ref|NP_565285.1| STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana] gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 1218 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P++ + L G + + L R+ LF+G +G GK + ++ + Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVAT 512 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C+ F+ S DF L N K ++RY L Sbjct: 513 EEMKPCGYCK--ECNDFM----SGKSKDFWELD-GANKKGAD-----------KVRYLLK 554 Query: 124 -----LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L N+ ++V +ID + + LK LE P QKV+FI I+ + TI+ Sbjct: 555 NLPTILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQ 614 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC F+ L ++++ L+++ Sbjct: 615 SRCQKFLFDKLKDSDIVVRLKKI 637 >gi|283853950|ref|ZP_06371152.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio sp. FW1012B] gi|283570659|gb|EFC18717.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio sp. FW1012B] Length = 296 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 30/195 (15%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALH 90 M AL+ EG Q +A + A + D S PC P +Q+ Sbjct: 39 MPQALILEGGQASERAAVAVWLAARLNCREDGS----------PCGRCPTCRQVLDKVFL 88 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 D Y + I VD +R +R + RVI++ G+ AANAL Sbjct: 89 DLQYFDGGVE--------TIKVDTMREVRRLVGEPPRGPGRRVIILAEAQGLTDEAANAL 140 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCL---------SIKFNSLSENNLYKALEQL 201 LK++EEP +F+L++ + T+ SR ++ S E++ + L+ L Sbjct: 141 LKAMEEPRPGNVFVLLAPQRERLFPTLVSRSFVLTLAWPDTAVPAPSGGEDDPWPLLDAL 200 Query: 202 KIMGWDSKRDFVKIA 216 W + R + A Sbjct: 201 HQF-WRTGRGWFSAA 214 >gi|251781864|ref|YP_002996166.1| DNA polymerase III subunit delta' [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390493|dbj|BAH80952.1| DNA polymerase III subunit delta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 290 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ A + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANAEMALFLAKVIFCEQKKEQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T G +V +I + M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYEGKRQVFIIKDCEKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGQAYMFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP] gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP] Length = 326 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 35/184 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I K L Y +G M H LLF G G+GK T A L F + Sbjct: 27 IVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTT-----AALCLTRELFGE------- 73 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WR 132 H H+FL L+ S R + + E +++ F G ++ Sbjct: 74 -------------HWRHNFLELNAS------DERGINVIRE--KVKEFARTKPIGGASFK 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + ++A AL + +E V FIL + S I+ I+SRC +F L + Sbjct: 113 IIFLDEADALTQDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDE 172 Query: 193 NLYK 196 ++ K Sbjct: 173 DIAK 176 >gi|296453325|ref|YP_003660468.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum subsp. longum JDM301] gi|296182756|gb|ADG99637.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. longum JDM301] Length = 936 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|257458026|ref|ZP_05623185.1| DNA polymerase III domain protein [Treponema vincentii ATCC 35580] gi|257444739|gb|EEV19823.1| DNA polymerase III domain protein [Treponema vincentii ATCC 35580] Length = 432 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + V+++R+ ++ L TG +V++I+ D M +A NA LK LEEPP+ +FIL + Sbjct: 185 TLPVNQVRKASAWVRLMP-TGKKKVLIIENADKMQDSARNAFLKILEEPPEYAVFILTTT 243 Query: 169 ASPTILSTIRSRCLSIKFN 187 ++STI SR + F Sbjct: 244 RRAAVISTILSRVRTYLFT 262 >gi|306834089|ref|ZP_07467209.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus bovis ATCC 700338] gi|304423662|gb|EFM26808.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus bovis ATCC 700338] Length = 291 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 18/166 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPF 80 K +Q S RM+HA LF G+ F +A + F+K+ R C N P Sbjct: 12 KEFNQILKSDRMNHAYLFSGDFA------SFDFALY------FAKS--RFCENLQDSLPC 57 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 K + + + + +G+ VI D IR + S + G +V +I + Sbjct: 58 GKCRECQLIAENEFSDVKVVKPSGQ---VIKTDTIRELMRDFSRSGFEGKSQVFIIQNCE 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 115 KMHVNAANSLLKFIEEPQSSSYMILLTSDENKVLPTIKSRTQIFRF 160 >gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni] gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni] Length = 355 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ I SRC +F SL Sbjct: 136 FKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSLG 195 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E+ + + L E +++ G +S + V+I+ G + RAI L Sbjct: 196 EDQIIERLKLICQAEGVQMDGEESYKSIVRISG-GDMRRAITTLQ 239 >gi|328948157|ref|YP_004365494.1| DNA polymerase III domain-containing protein [Treponema succinifaciens DSM 2489] gi|328448481|gb|AEB14197.1| DNA polymerase III domain-containing protein [Treponema succinifaciens DSM 2489] Length = 412 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + V +IR + L+++ G +V++I+ D M +A NALLK LEEPP+ V+FIL + Sbjct: 185 LPVLQIRNFSSWAHLSSSNGR-KVLIIENADLMADSARNALLKILEEPPEDVIFILTTTK 243 Query: 170 SPTILSTIRSRCLSIKF 186 IL TI SR + F Sbjct: 244 RGAILPTILSRVRTYNF 260 >gi|323126678|gb|ADX23975.1| DNA polymerase III subunit delta' [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 290 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ A + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANAEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T G +V +I + M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYEGKRQVFIIKDCEKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGQAYMFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|213691081|ref|YP_002321667.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522542|gb|ACJ51289.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457137|dbj|BAJ67758.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 923 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+F+ + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM 3091] gi|110287813|sp|Q2NH89|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091] Length = 321 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 36/187 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I L +Y + + ++F G G+GK T A +L Sbjct: 17 VVGQEQIVGRLKRYVEEKSLPN-IMFTGFAGVGKTTCALALAKSLL-------------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 + +FL L+ S +D +R I+ F L A +R Sbjct: 62 -----------GEYWQQNFLELNAS---------DARGIDTVRNEIKSFCKLKAVGAPFR 101 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D VD M ++A AL + +E + FIL + S I+ I+SRC +F+ + Sbjct: 102 IIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAA 161 Query: 193 NLYKALE 199 N+ K L+ Sbjct: 162 NIIKRLK 168 >gi|322411209|gb|EFY02117.1| DNA polymerase III subunit delta' [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 290 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R++HA LF G+ A + A + + P C C ++Q Sbjct: 21 NRLNHAYLFSGD--FANAEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------G 69 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 DF ++ L P TG+ VI D ++ + S T G +V +I + M+ NAAN+L Sbjct: 70 DFADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYEGKRQVFIIKDCEKMHVNAANSL 124 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 LK +EEP + L+++ +L TI+SR +F Sbjct: 125 LKYIEEPQGQAYIFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|116669121|ref|YP_830054.1| DNA polymerase III subunits gamma and tau [Arthrobacter sp. FB24] gi|116609230|gb|ABK01954.1| DNA polymerase III, subunits gamma and tau [Arthrobacter sp. FB24] Length = 1078 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + + L R++HA LF G +G GK T R L + Sbjct: 9 RRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSA-RILARCL---N 64 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P PC P ++A + G VD+ R +R Sbjct: 65 CAEGPTDT----PCGKCPSCIELARGGSGSLDVIEIDAASHGG-------VDDARDLRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 114 ATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE L Sbjct: 174 HHYPFRLVPPEPLMAYLELL 193 >gi|314922389|gb|EFS86220.1| DNA polymerase III subunit delta [Propionibacterium acnes HL001PA1] gi|314965426|gb|EFT09525.1| DNA polymerase III subunit delta [Propionibacterium acnes HL082PA2] gi|315094242|gb|EFT66218.1| DNA polymerase III subunit delta [Propionibacterium acnes HL060PA1] gi|315104895|gb|EFT76871.1| DNA polymerase III subunit delta [Propionibacterium acnes HL050PA2] gi|327329221|gb|EGE70981.1| DNA polymerase III, delta' subunit [Propionibacterium acnes HL103PA1] Length = 324 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 18 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 77 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 ++ TIRSRC + + + + L ++RD + ARA Sbjct: 78 PEDVIVTIRSRCRRLHLATPRDEAVADLL---------TRRDGIAPEVAAEAARA 123 >gi|16799282|ref|NP_469550.1| DNA polymerase III subunit delta' [Listeria innocua Clip11262] gi|16412624|emb|CAC95438.1| lin0205 [Listeria innocua Clip11262] Length = 330 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--LQNPDFSKAPVRMCNPDPCSP 79 K S+ R+ H L EG +G GK A + L+ + + A C C+ Sbjct: 16 KIFSKSVRENRLSHGYLLEGSRGTGKKRTALWLAQSLFCLERTETNLA----CGE--CAN 69 Query: 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ +ASH H ++L L P I +D++R ++ LS +V++I Sbjct: 70 CMR-IASHN-HPDVHL---LEPDGAS----IKIDQVRALKQELSKRGMESDQKVVIIYDA 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + M +AN+LLK +EEP +L + ++ IL TI+SR + F SL+ ++L + Sbjct: 121 EKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLVAS-- 178 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARA 224 L G ++ + + GSV A Sbjct: 179 -LTTAGISEQKARIYASITGSVEEA 202 >gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM 11551] gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM 11551] Length = 328 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 40/221 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++G EDI + L Y + H LLF G G+GK T + A R Sbjct: 29 VYGQEDIVERLRSYIEQDDLPH-LLFAGPAGVGKTT--------------SATAIARAIY 73 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D +FL L+ S + G +D +R RI+ F + +R Sbjct: 74 GDDWR-----------GNFLELNAS--DERG-------IDVVRDRIKNFARSSFGGFDYR 113 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + +A +AL +++E+ FIL + S I+ I+SRC +F+ L ++ Sbjct: 114 IIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + E +I + D + AA G + RAI L Sbjct: 174 AVREQVKDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQ 214 >gi|300118100|ref|ZP_07055848.1| DNA polymerase III subunit delta' [Bacillus cereus SJ1] gi|298724411|gb|EFI65105.1| DNA polymerase III subunit delta' [Bacillus cereus SJ1] Length = 336 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 +N+ + + L + ++ HA LF G+ G K + + + + P Sbjct: 7 WNEVMQKQHIVGTILKNGLVNKKVSHAYLFNGKAGTLKKETALLFIKSLFCLENSERIP- 65 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 CN D + H D + +S P+ G I ++I+++ +S T+ Sbjct: 66 --CN-DCRNCNRINNNIHP--DVVIIS----PEEG---GSIKKEQIQQLHKEISYTSTEL 113 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++ +ID V+ + +AAN+LLK LEEP IL++ +L T +SRC + F + Sbjct: 114 SRKIYLIDRVEMLTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTFQSRCQILNFLDI 173 Query: 190 S 190 S Sbjct: 174 S 174 >gi|297849856|ref|XP_002892809.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp. lyrata] gi|297338651|gb|EFH69068.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp. lyrata] Length = 1130 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 36/242 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ H LF+G +G GK + R L N Sbjct: 438 LSQKYKPMFFDELIGQSIVVQSLMSAVKKGRIAHVYLFQGPRGTGKTSTA-RILSAAL-N 495 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR---- 117 D ++ C + K+ + + L GK R ++ +D ++ Sbjct: 496 CDVVTEEMKPCG------YCKECSDYML--------------GKSRDLLELDAGKKNGAE 535 Query: 118 -IRYFLS--LT---ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +RY L LT ++ ++V +ID + +LLK LE P QKV+FI I+ Sbjct: 536 KVRYLLKKLLTLAPQSSPRYKVFVIDECHLLPSMTWLSLLKFLENPLQKVVFICITTDLD 595 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKI---MGWDSKR-DFVKIAAYGSVARAIKI 227 + TI+SRC FN + + ++ L ++ + + +S+ D + + A GS+ A + Sbjct: 596 NVPRTIQSRCQKYLFNKVRDGDIVVRLRKIALDENLDVESQALDLIALNADGSLRDAETM 655 Query: 228 LH 229 L Sbjct: 656 LE 657 >gi|291458685|ref|ZP_06598075.1| ATPase [Oribacterium sp. oral taxon 078 str. F0262] gi|291418602|gb|EFE92321.1| ATPase [Oribacterium sp. oral taxon 078 str. F0262] Length = 311 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV--RMCNP--DPCSPFVKQMASH 87 ++ +A L GE+ R+A +LQ + P+ R+ P + V++ Sbjct: 10 KVRNAYLLIGEEREQLYEAALRFAEELLQREGGEEEPLWKRLSYPSKEEWRESVRKRIRA 69 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 H L+ P+ +I+VD IRR + + + +++ +I D MN A Sbjct: 70 GEHPDLFRLLPDKPEEHP--KMISVDNIRRNLVDSVEIRPYEAEYKIYIIMDADKMNAQA 127 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 NALLK+LEEPP+ + +L+S L T+ SR + Sbjct: 128 QNALLKTLEEPPEYAVILLLSGGREAFLPTVLSRLIE 164 >gi|289167782|ref|YP_003446051.1| DNA polymerase III, delta' subunit [Streptococcus mitis B6] gi|288907349|emb|CBJ22186.1| DNA polymerase III, delta' subunit [Streptococcus mitis B6] Length = 296 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +ID + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIDQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L TIRSR F E L LEQ MG K+ + S A A K+ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQ---MGLVKKKATLLAQFSQSRAEAEKLA 201 Query: 229 H 229 H Sbjct: 202 H 202 >gi|314982837|gb|EFT26929.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL110PA3] gi|315091156|gb|EFT63132.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL110PA4] Length = 314 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VDE+R + ++ G +V++++ D + A+ALLK++EEP K +++L + Sbjct: 8 IGVDEVRELVRRAAMNPVHGCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPT 67 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 ++ TIRSRC + + + + L ++RD + ARA Sbjct: 68 PEDVIVTIRSRCRRLHLATPRDEAVADLL---------TRRDGIAPEVAAEAARA 113 >gi|119714583|ref|YP_921548.1| DNA polymerase III, subunits gamma and tau [Nocardioides sp. JS614] gi|119535244|gb|ABL79861.1| DNA polymerase III, subunits gamma and tau [Nocardioides sp. JS614] Length = 678 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + R++HA LF G +G GK T R L + Sbjct: 9 RRYRPETFAEVIGQAHVTEPLRVALANNRVNHAYLFSGPRGCGKTT-SARILARAL---N 64 Query: 64 FSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +APV DPC + +A + G VD+ R +R Sbjct: 65 CDQAPVA----DPCGECESCRDLARGGPGSIDVIEIDAASHGG-------VDDARDLREK 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID + NALLK +EEPP + FI + +L TIRSR Sbjct: 114 AFFAPVRSKYKVYIIDEAHMVTTQGFNALLKLVEEPPPHLRFIFATTEPDKVLPTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L +L Sbjct: 174 HHYPFRLIPPRLLSSYLSEL 193 >gi|325105792|ref|YP_004275446.1| DNA polymerase III gamma/tau subunit [Pedobacter saltans DSM 12145] gi|324974640|gb|ADY53624.1| DNA polymerase III gamma/tau subunit [Pedobacter saltans DSM 12145] Length = 399 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 42/245 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++++ L + R+ HA LF +G G L +A ++ C+ Sbjct: 22 IVGQQEVKNHLVKMVKDQRISHAQLFLSPEGSGSLALAMAFAQYICCENKQENDSCGECS 81 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSL----------------------NPKTG--KWRTV 109 C + K +H L+ SY NP G +WR Sbjct: 82 S--CRKYQK-----IIHPDLHFSYPFFAKHKEDTALTFIEEWRKAFLNNPYLGLDEWRDN 134 Query: 110 ITVD---------EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 ++ D E I LSL ++++++ + +++ NALLK +EEPP K Sbjct: 135 LSADNKQANINIAECHSIIQKLSLKPFESEYKILIMWLPEYLDKEG-NALLKIIEEPPHK 193 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 LF+L++ IL+TI SR +K ++ + L + + + ++K + + + GS Sbjct: 194 TLFLLVAQNQDQILNTILSRTQIVKIPKQKNEDIQQFLVEKRGLS-ENKAEQIAYLSNGS 252 Query: 221 VARAI 225 + A+ Sbjct: 253 LQNAL 257 >gi|24380040|ref|NP_721995.1| DNA polymerase III subunit delta' [Streptococcus mutans UA159] gi|290579981|ref|YP_003484373.1| putative DNA polymerase III delta subunit [Streptococcus mutans NN2025] gi|24378031|gb|AAN59301.1|AE014996_4 putative DNA polymerase III, delta subunit [Streptococcus mutans UA159] gi|254996880|dbj|BAH87481.1| putative DNA polymerase III delta subunit [Streptococcus mutans NN2025] Length = 291 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 16/151 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 SG++ HA LF G+ F A +L F +P+ + PC + A Sbjct: 20 SGKLSHAYLFSGDFA------SFEMAV-LLAQSRFCDSPI---DALPCGQ-CRSCRLIAE 68 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 +DF + + P+ +T D +R S + G +V +I D M+ NAAN+ Sbjct: 69 NDFSDVKV-IEPEGQMIKTATIRDLLRE----FSSSGFEGQSQVFIIRDADKMHTNAANS 123 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSR 180 LLK +EEP IL++ IL TI+SR Sbjct: 124 LLKFIEEPQSDTYMILLTQDESRILPTIKSR 154 >gi|57012999|sp|Q5UZE5|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit Length = 325 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 40/221 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I L Y + H +LF G G GK T A L D+ + Sbjct: 28 VMGHENIVGRLKSYVSRNDLSH-MLFSGPAGTGKTTCATAIA-RELYGDDWRE------- 78 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 H FL L+ S + G +D +R RI+ F + +R Sbjct: 79 ----------------H-FLELNAS--DERG-------IDVVRDRIKNFARTSFGGVEYR 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + +A +AL +++E+ V FIL + S I+ I+SRC +F+ L+++ Sbjct: 113 IIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADD 172 Query: 193 NLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + + I + D + AA G + +AI L Sbjct: 173 AVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQ 213 >gi|256786465|ref|ZP_05524896.1| DNA polymerase III subunits gamma and tau [Streptomyces lividans TK24] Length = 734 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTT-SARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGP----TPTPCGECQSCRDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 173 HHYPFRLVPPGTLRDYLAEV 192 >gi|110803532|ref|YP_699706.1| DNA polymerase III subunit delta' [Clostridium perfringens SM101] gi|110684033|gb|ABG87403.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens SM101] Length = 307 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 32/184 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + S+ + HA L GE GIGK+ L +A +L P + V + + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGENGIGKSLLADEFAYKILGIPS-QREHVDIVH 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + AS VD +R I + +V Sbjct: 60 ------YKSEKASFG-----------------------VDLVRNIIAEANKKPYECDRKV 90 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--E 191 I+I + + A NALLK++EEP + I++S +IL TIRSRC + LS E Sbjct: 91 IIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEE 150 Query: 192 NNLY 195 NLY Sbjct: 151 INLY 154 >gi|258545272|ref|ZP_05705506.1| DNA polymerase III, delta prime subunit [Cardiobacterium hominis ATCC 15826] gi|258519485|gb|EEV88344.1| DNA polymerase III, delta prime subunit [Cardiobacterium hominis ATCC 15826] Length = 314 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%) Query: 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 L+ +P T + +++IR + L T G R+ + +D N A NALLK+L Sbjct: 63 LAQGTHPDTASYLEPCKIEDIRDLGDTLQNTPAIGALRLTYLGAIDNYNPYALNALLKTL 122 Query: 155 EEPPQKVLFILISHASPTILSTIRSR 180 EEPPQ FIL + + +TI SR Sbjct: 123 EEPPQHSRFILSATNRRAVKATILSR 148 >gi|168214738|ref|ZP_02640363.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens CPE str. F4969] gi|170713817|gb|EDT25999.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens CPE str. F4969] Length = 307 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 32/184 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + S+ + HA L GE GIGK+ L +A +L P + V + + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKILGIPS-QREHVDIVH 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + AS VD +R I + +V Sbjct: 60 ------YKSEKASFG-----------------------VDLVRNIIAEANKKPYECDRKV 90 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--E 191 I+I + + A NALLK++EEP + I++S +IL TIRSRC + LS E Sbjct: 91 IIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEE 150 Query: 192 NNLY 195 NLY Sbjct: 151 INLY 154 >gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1] gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1] gi|42559530|sp|Q9HN27|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|226739141|sp|B0R7H7|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1] gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1] Length = 322 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 42/228 (18%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + + GH DI + L Y + H LLF G G GK Sbjct: 18 PERLEDVVGHPDITERLQSYVDRDDLPH-LLFAGPAGTGKTA------------------ 58 Query: 68 PVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLT 125 K++ D FL L+ S + G +D +R RI+ F + Sbjct: 59 --------SSVSIAKELYGDDWQDNFLELNAS--DERG-------IDVVRDRIKDFARSS 101 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +RVI +D D + +A +AL +++E+ FIL + S I+ I+SRC + Sbjct: 102 FGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFR 161 Query: 186 FNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILH 229 F L ++ + L ++ + G + D + AA G + RAI L Sbjct: 162 FAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQ 209 >gi|303233158|ref|ZP_07319831.1| conserved domain protein [Atopobium vaginae PB189-T1-4] gi|302480743|gb|EFL43830.1| conserved domain protein [Atopobium vaginae PB189-T1-4] Length = 390 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 29/42 (69%) Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 NAANALLK LEEPP FILI+ + +LSTI SRC I F Sbjct: 123 NAANALLKILEEPPSHTHFILIARDASLVLSTIVSRCQCIPF 164 >gi|297563870|ref|YP_003682843.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848319|gb|ADH70337.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 390 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%) Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + G +R+++ + D A+NALLK++EEP + +++L + +L TIRSRC + Sbjct: 112 SGGRFRIVLFEDADRATEAASNALLKAVEEPSPRTVWLLCTPTPDDLLVTIRSRCRMVTL 171 Query: 187 NSLSENNLYKALEQ 200 + L AL Q Sbjct: 172 ATPGTRELVDALVQ 185 >gi|227545629|ref|ZP_03975678.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213745|gb|EEI81584.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 940 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC 43049] gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC 43049] Length = 345 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 40/221 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE+I L Y + H +LF G G GK T A L D+ + Sbjct: 48 VMGHENIVGRLKSYVSRNDLSH-MLFSGPAGTGKTTCATAIA-RELYGDDWRE------- 98 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 H +L + + + G +D +R RI+ F + +R Sbjct: 99 ----------------H---FLELNASDERG-------IDVVRDRIKNFARTSFGGVEYR 132 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + +A +AL +++E+ V FIL + S I+ I+SRC +F+ L+++ Sbjct: 133 IIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADD 192 Query: 193 NLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + + I + D + AA G + +AI L Sbjct: 193 AVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQ 233 >gi|304385463|ref|ZP_07367808.1| DNA-directed DNA polymerase III subunit delta' [Pediococcus acidilactici DSM 20284] gi|304328670|gb|EFL95891.1| DNA-directed DNA polymerase III subunit delta' [Pediococcus acidilactici DSM 20284] Length = 336 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R ++ S + G +V +ID M +AAN+LLK +EEP V L++ + Sbjct: 92 IKVDQVRFLKAEFSKSGVEGNRKVFIIDQAHLMTTSAANSLLKFIEEPAGNVTAFLLTES 151 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL TI SR I+ L ++ L L Sbjct: 152 KNLILPTIMSRTEIIELKPLQKSQLVAEL 180 >gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera] Length = 1078 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ LF+G +G GK + + + Sbjct: 321 LSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCL 380 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C CS F+ + H + K G + R+RY Sbjct: 381 AVGETKPCGICRE--CSDFISGKSRH------FREIDGTNKKG----------MDRMRYL 422 Query: 122 L-----SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 L + ++V +ID + A LK LEEPP +V+FI I+ + T Sbjct: 423 LKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRT 482 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRC FN + E ++ L ++ Sbjct: 483 VLSRCQKYLFNKIKEGDIVARLRKI 507 >gi|254560987|ref|YP_003068082.1| DNA polymerase III, tau and subunit gammas [Methylobacterium extorquens DM4] gi|254268265|emb|CAX24200.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens DM4] Length = 626 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 41/246 (16%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + L + + R+ A + G +G+GK T G Y Sbjct: 31 VLARKYRPQTFDDLIGQGAMVRTLGNAFAANRIPQAWMLTGVRGVGKTTTARILARGLNY 90 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFL------YLSYSLNPKTGKW 106 +R PD P V ++ H H + L TG Sbjct: 91 --------------LRTGQPD-TGPTVSMPELGQH-CHAIMESRHMDVLEMDAASHTG-- 132 Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D++R I + + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 133 -----IDDVRGIIDGIRYSPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFA 187 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVA 222 + + TI SRC + + L L+++ + D V AA GSV Sbjct: 188 TTEIRKVPVTILSRCQRFDLRRVEADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVR 247 Query: 223 RAIKIL 228 A+ +L Sbjct: 248 DALSLL 253 >gi|312077613|ref|XP_003141381.1| hypothetical protein LOAG_05796 [Loa loa] gi|307763457|gb|EFO22691.1| hypothetical protein LOAG_05796 [Loa loa] Length = 305 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +V+++D VD M A AL +++E + F L + Sbjct: 68 IDVVRNKIKNFAQSKVTLPPGRHKVVILDEVDSMTEGAQQALRRTMEVYSKTTRFALACN 127 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 S ++ I+SRC ++F+ LSE + K L Q+ ++ DS D + A G + +A Sbjct: 128 QSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQVCEAERVTYDDSGIDALVFTAQGDMRQA 187 Query: 225 IKILH 229 + L Sbjct: 188 LNNLQ 192 >gi|325962021|ref|YP_004239927.1| DNA polymerase III subunit gamma/tau [Arthrobacter phenanthrenivorans Sphe3] gi|323468108|gb|ADX71793.1| DNA polymerase III, subunit gamma/tau [Arthrobacter phenanthrenivorans Sphe3] Length = 1208 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + G E + L R++HA LF G +G GK T R L Q Sbjct: 19 RRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSA-RILARCLNCAQ 77 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C P ++A + G VD+ R +R Sbjct: 78 GP--TDTPCGTC------PSCIELARGGSGSLDVIEIDAASHGG-------VDDARDLRE 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 RATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSR 182 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F + L LE L Sbjct: 183 THHYPFRLVPPEPLMAYLELL 203 >gi|320107105|ref|YP_004182695.1| DNA polymerase III subunit delta' [Terriglobus saanensis SP1PR4] gi|319925626|gb|ADV82701.1| DNA polymerase III, delta prime subunit [Terriglobus saanensis SP1PR4] Length = 376 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 94/242 (38%), Gaps = 36/242 (14%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--- 71 G+++ + L +GR+ H+L+ G G GK TL A Q + + P M Sbjct: 11 VGNDEAVQNLRTSIAAGRLPHSLILGGPAGAGKYTLAIMLA----QALNCERQPREMWSN 66 Query: 72 -------CNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT--------------- 108 C D C + L D + +T K T Sbjct: 67 GQTLASFCGVCDNCVRIAESADLQPLIDAAIAAREEMRETDKKETRVLIQTHPDVLIIPP 126 Query: 109 -----VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 +I + ++RR+ + A + R + I + AAN+LLK LEEPP Sbjct: 127 DPPQLLIKLGQVRRV-ITGAQRAPSQAPRKVFIFTSSSFMKEAANSLLKVLEEPPDFAHI 185 Query: 164 ILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 L++ +L TIRSRC ++ ++ L L + + ++R V A G+V + Sbjct: 186 FLLADNPGELLPTIRSRCGLVRLGAVPAEELEMVLAERRPEWKPNQRSLVARLAQGAVGK 245 Query: 224 AI 225 A+ Sbjct: 246 AL 247 >gi|270291179|ref|ZP_06197402.1| DNA polymerase III subunit delta [Pediococcus acidilactici 7_4] gi|270280575|gb|EFA26410.1| DNA polymerase III subunit delta [Pediococcus acidilactici 7_4] Length = 336 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R ++ S + G +V +ID M +AAN+LLK +EEP V L++ + Sbjct: 92 IKVDQVRFLKAEFSKSGVEGNRKVFIIDQAHLMTTSAANSLLKFIEEPAGNVTAFLLTES 151 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL TI SR I+ L ++ L L Sbjct: 152 KNLILPTIMSRTEIIELKPLQKSQLVAEL 180 >gi|18311431|ref|NP_563365.1| DNA polymerase III subunit delta' [Clostridium perfringens str. 13] gi|168206843|ref|ZP_02632848.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens E str. JGS1987] gi|168211229|ref|ZP_02636854.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens B str. ATCC 3626] gi|168217942|ref|ZP_02643567.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens NCTC 8239] gi|169344126|ref|ZP_02865109.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens C str. JGS1495] gi|18146115|dbj|BAB82155.1| DNA polymerase III delta' subunit [Clostridium perfringens str. 13] gi|169297737|gb|EDS79836.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens C str. JGS1495] gi|170661723|gb|EDT14406.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens E str. JGS1987] gi|170710784|gb|EDT22966.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens B str. ATCC 3626] gi|182380029|gb|EDT77508.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens NCTC 8239] Length = 307 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 32/184 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + S+ + HA L GE GIGK+ L +A +L P + V + + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKILGIPS-QREHVDIVH 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + AS VD +R I + +V Sbjct: 60 ------YKSEKASFG-----------------------VDLVRNIIAEANKKPYECDRKV 90 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--E 191 I+I + + A NALLK++EEP + I++S +IL TIRSRC + LS E Sbjct: 91 IIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEE 150 Query: 192 NNLY 195 NLY Sbjct: 151 INLY 154 >gi|325912929|ref|ZP_08175303.1| DNA polymerase III, delta' subunit family protein [Lactobacillus iners UPII 60-B] gi|325477743|gb|EGC80881.1| DNA polymerase III, delta' subunit family protein [Lactobacillus iners UPII 60-B] Length = 259 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASS 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|15902880|ref|NP_358430.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae R6] gi|116515715|ref|YP_816309.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae D39] gi|148988372|ref|ZP_01819819.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP6-BS73] gi|15458438|gb|AAK99640.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae R6] gi|116076291|gb|ABJ54011.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae D39] gi|147926053|gb|EDK77127.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP6-BS73] Length = 296 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 +L TIRSR F E L LEQ MG K+ + S A A K+ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQ---MGLVKKKATLLAKFSQSRAEAEKLA 201 Query: 229 H 229 H Sbjct: 202 H 202 >gi|189502043|ref|YP_001957760.1| hypothetical protein Aasi_0634 [Candidatus Amoebophilus asiaticus 5a2] gi|189497484|gb|ACE06031.1| hypothetical protein Aasi_0634 [Candidatus Amoebophilus asiaticus 5a2] Length = 381 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I E + I + S+ + +++I I + + ANA+LK+LE+PP LF L+S Sbjct: 132 IIPRVEAKYISQYASMQSLESSYKIIFIWLPEYFHPTTANAMLKTLEDPPPHTLFFLVSL 191 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 A +L TIRSR + S+ + + L Q + + V++A G++ +A K++ Sbjct: 192 APEKLLGTIRSRLQQVYIPLFSDEVIAQLLAQQYELSSQKLGEVVRLAE-GNLNKAYKLI 250 >gi|312133496|ref|YP_004000835.1| dnax2 [Bifidobacterium longum subsp. longum BBMN68] gi|311772738|gb|ADQ02226.1| DnaX2 [Bifidobacterium longum subsp. longum BBMN68] Length = 948 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|149196128|ref|ZP_01873184.1| DNA polymerase III subunits gamma and tau [Lentisphaera araneosa HTCC2155] gi|149140975|gb|EDM29372.1| DNA polymerase III subunits gamma and tau [Lentisphaera araneosa HTCC2155] Length = 327 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++ +I D M A NA LK+LEEPP + F LIS+ +L TIRSRC + N Sbjct: 111 KIGIIYEADCMVEQAQNAFLKTLEEPPPQTCFFLISNKPDALLDTIRSRCRLLNLN 166 >gi|110800633|ref|YP_697137.1| DNA polymerase III subunit delta' [Clostridium perfringens ATCC 13124] gi|110675280|gb|ABG84267.1| putative DNA polymerase III, delta prime subunit [Clostridium perfringens ATCC 13124] Length = 307 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 32/184 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH + S+ + HA L GE GIGK+ L +A +L P + V + + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKILGIPS-QREHVDIVH 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + + AS VD +R I + +V Sbjct: 60 ------YKSEKASFG-----------------------VDLVRNIIAEANKKPYECDRKV 90 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--E 191 I+I + + A NALLK++EEP + I++S +IL TIRSRC + LS E Sbjct: 91 IIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEE 150 Query: 192 NNLY 195 NLY Sbjct: 151 INLY 154 >gi|15241031|ref|NP_198126.1| EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana] gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana] gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDF 64 + P ++ HEDI + L + H LLF G G GK TL + + + Sbjct: 7 YRPKSLDKVIVHEDIAQKLKKLVSEQDCPH-LLFYGPSGSGKKTLIMALLKQIYGASAEK 65 Query: 65 SKAPVRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K R D S + ++ + + + + L+ S ++ + E+ + R + Sbjct: 66 VKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP-ID 124 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 GY +V++++ VD ++R A ++L +++E+ IL ++S + I+SRCL+ Sbjct: 125 TKGKKGY-KVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLN 183 Query: 184 IKFNSLSENNLYKALE 199 ++ N+ S+ + K LE Sbjct: 184 VRINAPSQEEIVKVLE 199 >gi|302873021|ref|YP_003841654.1| DNA polymerase III delta [Clostridium cellulovorans 743B] gi|307688814|ref|ZP_07631260.1| DNA polymerase III subunit delta' [Clostridium cellulovorans 743B] gi|302575878|gb|ADL49890.1| DNA polymerase III delta [Clostridium cellulovorans 743B] Length = 312 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 30/168 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E+++K + + HA + GE G GK+ + Sbjct: 6 IIGNEEVKKQFVKNLEAKTFAHAHIIAGEDGSGKSLMA---------------------- 43 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K A L +Y +Y+ + + I VD+IR + + G +V Sbjct: 44 --------KSAAIKILSKSIYQNYADIIEFKTSKASIGVDDIRVLIEETNKKPFEGDKKV 95 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 I+I + + NA LK++EEPP+ V L+ IL TI+SRC Sbjct: 96 IIIYNAEKITVQGQNAFLKTIEEPPKGVFIFLLCENLEKILDTIKSRC 143 >gi|317483358|ref|ZP_07942350.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|316915175|gb|EFV36605.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] Length = 966 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|218530155|ref|YP_002420971.1| DNA polymerase III subunits gamma and tau [Methylobacterium chloromethanicum CM4] gi|218522458|gb|ACK83043.1| DNA polymerase III, subunits gamma and tau [Methylobacterium chloromethanicum CM4] Length = 626 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 43/247 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + L + + R+ A + G +G+GK T G Y Sbjct: 31 VLARKYRPQTFDDLIGQGAMVRTLGNAFAANRIPQAWMLTGVRGVGKTTTARILARGLNY 90 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASH------ALH-DFLYLSYSLNPKTGK 105 +R PD P V ++ H + H D L + + + TG Sbjct: 91 --------------LRTGQPD-TGPTVSMPELGQHCQAIMESRHMDVLEMDAASH--TG- 132 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 +D++R I + + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 133 ------IDDVRGIIDGIRYSPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVF 186 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSV 221 + + TI SRC + + L L+++ + D V AA GSV Sbjct: 187 ATTEIRKVPVTILSRCQRFDLRRVEADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSV 246 Query: 222 ARAIKIL 228 A+ +L Sbjct: 247 RDALSLL 253 >gi|46190545|ref|ZP_00121363.2| COG2812: DNA polymerase III, gamma/tau subunits [Bifidobacterium longum DJO10A] gi|189440151|ref|YP_001955232.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum DJO10A] gi|189428586|gb|ACD98734.1| DNA polymerase III gamma/tau subunit [Bifidobacterium longum DJO10A] Length = 960 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|322688320|ref|YP_004208054.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis 157F] gi|320459656|dbj|BAJ70276.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis 157F] Length = 970 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|317486982|ref|ZP_07945791.1| DNA polymerase III subunit delta [Bilophila wadsworthia 3_1_6] gi|316921760|gb|EFV43037.1| DNA polymerase III subunit delta [Bilophila wadsworthia 3_1_6] Length = 310 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%) Query: 76 PC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P Q+ ++ HD Y L+ + G I ++ +R +R L RV Sbjct: 79 PCLHCPACLQIGANLFHDL----YVLDGREGS----IKIETVRELRTILGEAPRGDGKRV 130 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ + AANALLKSLEEP V F+L++ +L T+ SR Sbjct: 131 VILAEAQSLGVEAANALLKSLEEPRPGVCFLLLAPQRERLLPTLVSR 177 >gi|327470491|gb|EGF15947.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK330] Length = 296 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F +SL ++ L K+ +L ++ + +A Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTAALQHSLEQDGLIKSRAELLAAYSQTQSEAASLAHNN 204 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + +C++ + D P Q + + ++ ++AD+ Q+Q F L Sbjct: 205 AFFELVS----ECERFVK---DFQTRPSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 K+I + AL Sbjct: 256 YKDIATESGRQAL 268 >gi|312875755|ref|ZP_07735750.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] gi|311088747|gb|EFQ47196.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] Length = 285 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASS 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|299136792|ref|ZP_07029975.1| DNA polymerase III, delta prime subunit [Acidobacterium sp. MP5ACTX8] gi|298601307|gb|EFI57462.1| DNA polymerase III, delta prime subunit [Acidobacterium sp. MP5ACTX8] Length = 377 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + AAN+LLK LEEPP ++++ +L TIRSRC ++ +L + L +L+ Sbjct: 166 KEAANSLLKVLEEPPTYAHILILAENLGELLPTIRSRCAIVRLGALPAEEIETLLTRLRP 225 Query: 204 MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPR 247 ++R + + G+V RA L ++ + +++ D + I R Sbjct: 226 ESNKTERALLARLSEGAVGRA---LGFNLAEYVAARADALIIMR 266 >gi|240138441|ref|YP_002962913.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens AM1] gi|240008410|gb|ACS39636.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens AM1] Length = 626 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 43/247 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + L + + R+ A + G +G+GK T G Y Sbjct: 31 VLARKYRPQTFDDLIGQGAMVRTLGNAFAANRIPQAWMLTGVRGVGKTTTARILARGLNY 90 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASH------ALH-DFLYLSYSLNPKTGK 105 +R PD P V ++ H + H D L + + + TG Sbjct: 91 --------------LRTGQPD-TGPTVSMPELGQHCQAIMESRHMDVLEMDAASH--TG- 132 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 +D++R I + + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 133 ------IDDVRGIIDGIRYSPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVF 186 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSV 221 + + TI SRC + + L L+++ + D V AA GSV Sbjct: 187 ATTEIRKVPVTILSRCQRFDLRRVEADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSV 246 Query: 222 ARAIKIL 228 A+ +L Sbjct: 247 RDALSLL 253 >gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] Length = 359 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDF 64 + P ++ HEDI + L + H LLF G G GK TL + + + Sbjct: 7 YRPKSLDKVIVHEDIAQNLKKLVTEQDCPH-LLFYGPSGSGKKTLIMALLKQIYGASAEK 65 Query: 65 SKAPVRMCNPDPCSPFVK-QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K R D S + ++ + + + + L+ S ++ + E+ + R + Sbjct: 66 VKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP-ID 124 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 GY +V++++ VD ++R A ++L +++E+ IL ++S + I+SRCL+ Sbjct: 125 TKGKKGY-KVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLN 183 Query: 184 IKFNSLSENNLYKALE 199 ++ N+ S+ + K LE Sbjct: 184 VRINAPSQEEIVKVLE 199 >gi|163851288|ref|YP_001639331.1| DNA polymerase III, subunits gamma and tau [Methylobacterium extorquens PA1] gi|163662893|gb|ABY30260.1| DNA polymerase III, subunits gamma and tau [Methylobacterium extorquens PA1] Length = 628 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 43/247 (17%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL------GFRY 54 ++ R + P L G + + L + + R+ A + G +G+GK T G Y Sbjct: 33 VLARKYRPQTFDDLIGQGAMVRTLGNAFAANRIPQAWMLTGVRGVGKTTTARILARGLNY 92 Query: 55 AGHVLQNPDFSKAPVRMCNPDPCSPFVK--QMASH------ALH-DFLYLSYSLNPKTGK 105 +R PD P V ++ H + H D L + + + TG Sbjct: 93 --------------LRTGQPD-TGPTVSMPELGQHCQAIMESRHMDVLEMDAASH--TG- 134 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 +D++R I + + + ++V ++D V ++ A NA LK+LEEPP F+ Sbjct: 135 ------IDDVRGIIDGIRYSPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVF 188 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSV 221 + + TI SRC + + L L+++ + D V AA GSV Sbjct: 189 ATTEIRKVPVTILSRCQRFDLRRVEADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSV 248 Query: 222 ARAIKIL 228 A+ +L Sbjct: 249 RDALSLL 255 >gi|239622697|ref|ZP_04665728.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514694|gb|EEQ54561.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1008 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 45 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 100 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 101 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 149 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 150 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 209 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 210 HHYPFRLVPQEVMGPYLETI 229 >gi|23465090|ref|NP_695693.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum NCC2705] gi|23325703|gb|AAN24329.1| DNA polymerase III subunit gamma/tau [Bifidobacterium longum NCC2705] Length = 970 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|81427956|ref|YP_394955.1| DNA polymerase III subunit delta' [Lactobacillus sakei subsp. sakei 23K] gi|78609597|emb|CAI54643.1| DNA-directed DNA polymerase III, delta prime subunit [Lactobacillus sakei subsp. sakei 23K] Length = 330 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 16/186 (8%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCS 78 +++F +Q G++ H L G QG+GK L A + Q + P C Sbjct: 14 VQQF-AQIIARGQLAHGYLLAGAQGVGKMQLAQWLALRLFCQQVNEDSQPCYQC------ 66 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 P +++ + D + + P GK I + +IR ++ ++ + R+ +I+ Sbjct: 67 PECQRILTGNHPDVV----EIKPD-GK---SIKIADIRYLKQEVAKSGMESSQRLFIIEA 118 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + +AAN+LLK LEEP V IL + +L TI SR I +L + + + Sbjct: 119 AETLTASAANSLLKFLEEPAPNVYAILCTSNKNLMLPTILSRLQVIDLANLPKEMVRQQF 178 Query: 199 EQLKIM 204 E+ +I+ Sbjct: 179 EEAQIL 184 >gi|330948262|gb|EGH48522.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. pisi str. 1704B] Length = 94 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 43/73 (58%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL + Sbjct: 2 GRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKN 61 Query: 189 LSENNLYKALEQL 201 ++ + + L + Sbjct: 62 MTPERVVEHLTHV 74 >gi|325911582|ref|ZP_08173990.1| hypothetical protein HMPREF0522_0017 [Lactobacillus iners UPII 143-D] gi|325476568|gb|EGC79726.1| hypothetical protein HMPREF0522_0017 [Lactobacillus iners UPII 143-D] Length = 285 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASS 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|294791186|ref|ZP_06756343.1| putative DNA polymerase III, delta' subunit [Scardovia inopinata F0304] gi|294457657|gb|EFG26011.1| putative DNA polymerase III, delta' subunit [Scardovia inopinata F0304] Length = 395 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 18/143 (12%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 L G G G++ + +A + + P C P +Q+ D L+ Sbjct: 46 LICGPPGSGRSQVARAFAAAL-------ECPRGGCG---TCPVCRQIMKDEHPDVTVLAT 95 Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 + + I++D++R + T WR+I+I+ VD M N LLK +EEP Sbjct: 96 N--------KITISIDQVRSLIADSEQMPVTAPWRIIIIEDVDRMLERTTNVLLKEIEEP 147 Query: 158 PQKVLFILISHASPTILSTIRSR 180 K +++L + +S +L TI SR Sbjct: 148 APKTIWLLCAPSSQDVLPTILSR 170 >gi|157151029|ref|YP_001450817.1| DNA polymerase III subunit delta' [Streptococcus gordonii str. Challis substr. CH1] gi|157075823|gb|ABV10506.1| DNA-directed DNA polymerase III, delta'' chain [Streptococcus gordonii str. Challis substr. CH1] Length = 299 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 12/166 (7%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + IR + S + G +V +I + M+ NAAN+LLK +EEP +V L++ Sbjct: 86 IIKTERIRELLKNFSQSGVEGNEQVFIICEAEKMHLNAANSLLKMIEEPQSEVYIFLLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 IL TI+SR F +E+ L LE+ ++ ++ +A Y + L Sbjct: 146 DENLILPTIKSRTQVFHFPK-NEDYLVAKLEESGLLKDQAQL----LATYSQTLEEAQNL 200 Query: 229 H-----YDCDKIISSYIDLIHIPRQEYALQ--KMQQIADELLSQDQ 267 +D ++ ++DL LQ ++ +AD+ QDQ Sbjct: 201 QTSKFFFDVTQVCQRFVDLCLAKNDLAFLQVARLSSLADDKEKQDQ 246 >gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5 kDa) [Ciona intestinalis] Length = 327 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/328 (22%), Positives = 128/328 (39%), Gaps = 54/328 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HEDI +S + R+ H LLF G G GK + A + F+ Sbjct: 22 LISHEDILSTISGFLAQNRLPH-LLFYGPPGTGKTSTILACARKLYSTTQFNSM------ 74 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT-VITVDEIRRIRYFLSLTANTGYWR 132 L L+ S + G R +++ R I N G+ + Sbjct: 75 ------------------VLELNASDDRGIGVVRNQILSFASTRTI-------FNKGF-K 108 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M ++A NAL + +E+ + F LI + I+ I+SRC +F L+ + Sbjct: 109 LIILDEADAMTKDAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTD 168 Query: 193 NLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + LE +K+ + D + A G + +A+ IL D ++ Sbjct: 169 KISSRLEYIIKVEQLNVTEDGLNALVTLANGDMRKALNILQSSSMAYNEVDEDGVYKCTG 228 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 +++I +L++D A+ ++E ++ + D I QI+ Sbjct: 229 RPRRDDIKKIMKWMLNEDYTTAYRSIMEL------------NMTTSMALQDIIEQIHL-F 275 Query: 309 VKRVH---AFSMYNLDRRQMIFHLLSKA 333 V VH A +Y LD+ I H L+ Sbjct: 276 VHEVHFPVAVRIYLLDKLADIEHRLASG 303 >gi|320536671|ref|ZP_08036686.1| DNA polymerase III domain protein [Treponema phagedenis F0421] gi|320146493|gb|EFW38094.1| DNA polymerase III domain protein [Treponema phagedenis F0421] Length = 431 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D++R++ ++ L G + ++I+ D M +A NA LK LEEPP+ FIL + Sbjct: 184 IPIDQVRKVSAWVRLMP-IGKRKTVIIENADKMQESARNAFLKILEEPPEYATFILTTAR 242 Query: 170 SPTILSTIRSRCLSIKF 186 I+ TI SR + F Sbjct: 243 RAAIIPTILSRVRTYAF 259 >gi|238062270|ref|ZP_04606979.1| DNA polymerase III, delta prime subunit [Micromonospora sp. ATCC 39149] gi|237884081|gb|EEP72909.1| DNA polymerase III, delta prime subunit [Micromonospora sp. ATCC 39149] Length = 218 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I V E+R + + T + G W+V++I D + A NALLK++EEPP + +F+L + Sbjct: 159 IGVGEMRALVLRAASTPSGGRWQVVIISDADRLTEAAGNALLKAVEEPPPRTVFLLCA 216 >gi|26554263|ref|NP_758197.1| DNA polymerase III subunits gamma and tau [Mycoplasma penetrans HF-2] gi|26454272|dbj|BAC44601.1| DNA polymerase III gamma-tau subunits [Mycoplasma penetrans HF-2] Length = 804 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 23/227 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + I K LS + HA +F G +G+GK ++ F + L Sbjct: 9 RKYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFSKVLNCLNL 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + + D + L + N G+ R +I I Y Sbjct: 69 KDGDCCNNCNN--------CNLINQNQAVDIVELDAASNNGVGEVRNIIDT-----INYL 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S+ ++V +ID ++ A N LK +E+PP+ ++FI + S TI SRC Sbjct: 116 PSVLK----YKVYIIDEAHMLSNAAWNTFLKLIEDPPKYLVFIFATTESYKFPPTIISRC 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 F L+ + L + L+ + KI D+ + + A GS+ A Sbjct: 172 QRYNFLKLNNSELKECLKSIAKKEKIKVEDNALNKIAELADGSLRDA 218 >gi|225351267|ref|ZP_03742290.1| hypothetical protein BIFPSEUDO_02859 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158723|gb|EEG71965.1| hypothetical protein BIFPSEUDO_02859 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 876 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 103/267 (38%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + ++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFDGVIGQDQVTIPLMRALDENKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ-------------LKI---MGWDSKRDFVKI-------AAY 218 F + + + LE+ L++ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLERICEDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYIDLI 243 GS+A A+ +L + D +I +D + Sbjct: 232 GSIAYDSAVALLGFTPDALIGEAVDAV 258 >gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC 35061] gi|158513780|sp|A5UMF3|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter smithii ATCC 35061] Length = 315 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 52/309 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L +Y M + L+F G G+GK T +L Sbjct: 17 IIGQKQIVNRLQKYVGEESMPN-LMFTGPAGVGKTTTAIALVKAIL-------------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 + +FL L+ S +D +R I+ F L +R Sbjct: 62 -----------GEYWRQNFLELNAS---------DARGIDTVRNDIKNFCRLKPVGAPFR 101 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D VD M ++A +AL + +E + FIL + S I+ I+SRC +F + Sbjct: 102 IIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGE 161 Query: 193 NLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + L+ + + D + ++ A G + +A+ +L + D ++ Sbjct: 162 EIANRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVS 221 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 + Q + + + LS D A + L E ++ + SG+ D ++QIY + Sbjct: 222 KAKPQDVHNLITKALSGDFMGARNLLRETMVLQ--------GTSGE----DMVSQIYQDV 269 Query: 309 VKRVHAFSM 317 KRV M Sbjct: 270 SKRVFEGKM 278 >gi|58617668|ref|YP_196867.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str. Gardel] gi|58417280|emb|CAI28393.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str. Gardel] Length = 500 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 29/233 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L G + + + L + ++ ++L G GIGK T R L + + Sbjct: 20 YRPSNFKDLIGQDVLVRILRNAFHLNKVPQSILLTGGSGIGKTTAA-RIISMCL---NCA 75 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P +PC+ + ++ + D + + + N ++++++ I Sbjct: 76 SGPTS----NPCNTCINCISIKNFNHPDVIEIDAASNT---------SIEDVKIILENSH 122 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T ++V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 123 YVPITSKFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQR 182 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSK----RDFVKIAAY---GSVARAIKILH 229 + N+ ++ L+I+ + + +K+ AY GS+ A+ +L Sbjct: 183 FDLQRIPTENI---VDHLRIIAKEENILFDEESIKLIAYNSDGSMRNALSLLE 232 >gi|15643534|ref|NP_228580.1| DNA polymerase III, gamma subunit-related protein [Thermotoga maritima MSB8] gi|4981299|gb|AAD35853.1|AE001746_14 DNA polymerase III, gamma subunit-related protein [Thermotoga maritima MSB8] Length = 312 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR I+ FL+ + + +++ + M + AANA LK+LEEPP+ + +L + Sbjct: 69 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 128 Query: 170 SPTILSTIRSRCLSIKFN 187 +L TI+SR + N Sbjct: 129 WHYLLPTIKSRVFRVVVN 146 >gi|282879139|ref|ZP_06287897.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281298713|gb|EFA91124.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 383 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 47/261 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ED + L Q R+ HA++ G G GK L +A ++L + V N Sbjct: 6 VIGQEDAQARLLQLVRENRVPHAIMLCGPYGSGKLALALAFASYLLGERNEEGQSV--LN 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTG--------------KWRTVIT-------- 111 D + M + H L+ ++ + TG +WRT++ Sbjct: 64 NDHAVTNAEAMLRNWEHPDLHFTFPVIRPTGTSSDHKMVSDDFGREWRTLLKEGAYFSMD 123 Query: 112 -------------------VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 DE+ R LSL ++ G +++ +I + MN+ AN LLK Sbjct: 124 QWLDRMKATTQQAQIFEAESDELTRK---LSLKSSQGGYKISLIWLPERMNQVCANKLLK 180 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDF 212 LEEPP + LFIL+ +L TIRSR I + + + +AL + + + D Sbjct: 181 LLEEPPLQTLFILVCEEPEKLLETIRSRVQRIDVRRIDDQAIEQALVEKRGLEADMAHRI 240 Query: 213 VKIAAYGSVARAIKILHYDCD 233 + A G+ +A++ L D + Sbjct: 241 AR-TANGNWLKALETLDADNE 260 >gi|315301028|ref|ZP_07872347.1| DNA polymerase III subunit delta' [Listeria ivanovii FSL F6-596] gi|313630594|gb|EFR98408.1| DNA polymerase III subunit delta' [Listeria ivanovii FSL F6-596] Length = 330 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 18/194 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 R+ H L EG G GK A + P ++ C C+ ++ASH H Sbjct: 26 RLSHGYLLEGASGTGKKRTSLWLAQSLFCLEPTETELACGECAN--CT----RIASHN-H 78 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 ++L L P I +D++R ++ LS +V++I + M +AN+L Sbjct: 79 PDVHL---LEPDGAS----IKIDQVRALKQDLSKRGMESDRKVVIIYDAEKMTVQSANSL 131 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKR 210 LK +EEP +L + ++ IL TI+SR + F SL+ ++L +L ++ G ++ Sbjct: 132 LKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLVASLTRI---GISEQK 188 Query: 211 DFVKIAAYGSVARA 224 + + GS RA Sbjct: 189 ARIYASITGSTERA 202 >gi|309810108|ref|ZP_07703954.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|308169607|gb|EFO71654.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] Length = 285 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLVCLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKDELAKKPVEGSRRFFIVKDASS 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|307729689|ref|YP_003906913.1| DNA polymerase III subunit delta' [Burkholderia sp. CCGE1003] gi|307584224|gb|ADN57622.1| DNA polymerase III, delta prime subunit [Burkholderia sp. CCGE1003] Length = 347 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 34/174 (19%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDF 92 HALL G+ GIGK R+A H+ Q + N +PC V A D+ Sbjct: 22 HALLLHGQAGIGK----LRFAQHLAQG---LLCEAQQANGEPCGECVACNWFAQGNHPDY 74 Query: 93 -LYLSYSLNPKTG---------------------KWRTV---ITVDEIRRIRYFLSLTAN 127 + + +L + G K RT I +++IR + F+ + ++ Sbjct: 75 RIVVPEALAAEAGIGNGADDKAEKADKSDADEGKKTRTPSKEIKIEQIRGLLDFVGVGSH 134 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 135 RGGARVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 188 >gi|218289084|ref|ZP_03493321.1| DNA polymerase III gamma/tau subunits-like protein [Alicyclobacillus acidocaldarius LAA1] gi|218240909|gb|EED08087.1| DNA polymerase III gamma/tau subunits-like protein [Alicyclobacillus acidocaldarius LAA1] Length = 312 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 18/176 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 RL G ++ + L + +G + HA+L GE K + + + P AP C Sbjct: 9 RLDGAVELPEVLVRRLRAGELWHAVLMVGESSQAKRAARWLAQALLCEAPR-EDAPCGRC 67 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 C+ F S H L+ S K G ++ ++ +L+ T G + Sbjct: 68 RS--CAQF-----SAGSHPDLWESGEEGLKAG---------DVEALQEWLA-TKGHGTRK 110 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 V ++ D M AAN +LK+LEEP + IL + + +LSTIRSR + ++ Sbjct: 111 VYVLHGADEMTPVAANRMLKTLEEPAPETYAILTAKSRQKVLSTIRSRSFTCLLSA 166 >gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 170 str. F0386] gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 170 str. F0386] Length = 1079 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 17/179 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G + + L + R+ HA LF G +G GK T R L + Sbjct: 7 RRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAYLFSGPRGCGKTTSA-RILARCL---N 62 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++AP PC + +A+ + G VD+ R +R Sbjct: 63 CAQAPTDT----PCGTCSSCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 AAFAPARDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170 >gi|148244375|ref|YP_001219069.1| DNA polymerase III delta prime subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326202|dbj|BAF61345.1| DNA polymerase III delta prime subunit [Candidatus Vesicomyosocius okutanii HA] Length = 342 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 HALL G + IGK L + G +L++ + N D P + + +++ + +Y Sbjct: 24 HALLITGVEKIGKFELMQQLVGVLLKDDIIIRKDNVRNNLD--YPVLIRRSNYP--NMVY 79 Query: 95 LSYSLNPKTGKWRTV-ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 + K R+ I +D++R L+ TA+ VI D MN AAN LLK+ Sbjct: 80 CRAGEMVEKNKNRSNNIRIDQVRVFCDALNKTADELQIGVIFYG--DQMNIGAANGLLKT 137 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSI 184 LEEP + L I+++H + TI SRC +I Sbjct: 138 LEEPRKNTLIIILAHHVENLPITIVSRCQNI 168 >gi|220911471|ref|YP_002486780.1| DNA polymerase III subunits gamma/tau [Arthrobacter chlorophenolicus A6] gi|219858349|gb|ACL38691.1| DNA polymerase III, subunits gamma and tau [Arthrobacter chlorophenolicus A6] Length = 1202 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L R++HA LF G +G GK T R L + Sbjct: 9 RRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSA-RILARCL---N 64 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P PC P ++A + G VD+ R +R Sbjct: 65 CAEGPTDT----PCGVCPSCVELARGGSGSLDVIEIDAASHGG-------VDDARDLRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 114 ATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L LE L Sbjct: 174 HHYPFRLVPPEPLMAYLELL 193 >gi|229917429|ref|YP_002886075.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] gi|229468858|gb|ACQ70630.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] Length = 330 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 + + + S ++ HA +F G+ Y ++L + +PD P Sbjct: 13 VSRIIQNSIVSNKVGHAYIFSGD-----------YEPYLLDTATLFAKALFCESPDGAEP 61 Query: 80 F-----VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 ++M S + D++ + P I ++I+++ LSL G +V Sbjct: 62 CGVCRNCRRMDSKNIVDYI----EVEPDGAS----IKKEQIQQLLSDLSLRGAEGDRQVY 113 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I M AAN+LLK EEP L IL++ +L TIRSR + F + L Sbjct: 114 VIHQAHKMTTQAANSLLKFFEEPGVGKLAILVTTQPQLLLPTIRSRAQQLAFRPIDRAQL 173 Query: 195 YKAL-EQLKIM------------GWDSKRDFVK----IAAYGSVARAIKIL 228 + + E+L WD ++ ++ + AYG V + I++L Sbjct: 174 AQTMSEELSCTYDLAYLALTVYPKWDDAKEALEQEWFVQAYGLVVQLIEVL 224 >gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB] gi|166225157|sp|A6US36|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB] Length = 315 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 37/228 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH++I K L Y M H LLF G G+GK T A + N Sbjct: 9 YRPENLDEVVGHQEIIKRLKNYVEKKSMPH-LLFSGSPGVGKTTAALCLAKDLYGN---- 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 64 ---------------------TWKENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ F+L + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 F+ L +L K L+++ I S D + + G + +AI +L Sbjct: 156 FSPLKTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQ 203 >gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 342 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ HEDI + L + H LLF G G GK TL + P Sbjct: 7 YRPKTLDQIMVHEDIAQNLKKLVTEQDCPH-LLFYGPSGSGKKTLIMALLRQIF-GPSAE 64 Query: 66 KAPV--RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI--TVDEIRRIRYF 121 K V + D S + + L ++ S + R ++ + ++ + R Sbjct: 65 KVKVENKTWKIDAGSRTI-DVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKNRPL 123 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY ++++++ VD ++R A ++L +++E+ IL ++S + IRSRC Sbjct: 124 VDAKGRKGY-KILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSRC 182 Query: 182 LSIKFNSLSENNLYKALE 199 L+++ ++ SE + K LE Sbjct: 183 LNVRISAPSEEQIVKVLE 200 >gi|161506954|ref|YP_001576908.1| DNA polymerase III, delta subunit [Lactobacillus helveticus DPC 4571] gi|260102443|ref|ZP_05752680.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|160347943|gb|ABX26617.1| DNA polymerase III, delta subunit [Lactobacillus helveticus DPC 4571] gi|260083763|gb|EEW67883.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328462879|gb|EGF34728.1| DNA polymerase III, delta subunit [Lactobacillus helveticus MTCC 5463] Length = 285 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 7/115 (6%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ+ S D L + + + + +D++R ++ L+ + R Sbjct: 57 PDGTCQNCKQILSGNHPDVLLVE-------PEGKQTLGIDQVRPLKEELAKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 I+ M +AAN LL LEEP V+ ILI++ S IL T+RSR I F++ Sbjct: 110 FFINEAQKMTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTVRSRTQIINFDN 164 >gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66] gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris RN66] Length = 335 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 33/244 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++ ++ K L G M H LLF G G GK + + N +F + + Sbjct: 22 IYHQTEVVKMLKNVLEFGNMPH-LLFYGPPGTGKTSAILALCRELFGNDEFRNRTLELNA 80 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D V + + S +NP TG R+I W+V Sbjct: 81 SDERGINVVREKIKTWTRQVVYSNKINPITG-----------RKI----------PPWKV 119 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS--- 190 +++D + M +A +AL + +E + F++I + I+ + SRC +F +S Sbjct: 120 VILDEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKA 179 Query: 191 -ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC-----DKII--SSYIDL 242 L +Q I+ D + + G + RAI IL C ++I+ +S I++ Sbjct: 180 QRERLNFICQQENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEV 239 Query: 243 IHIP 246 IP Sbjct: 240 AGIP 243 >gi|312873602|ref|ZP_07733649.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] gi|311090855|gb|EFQ49252.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] Length = 285 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLVCLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKDELAKKPVEGSRRFFIVKDASS 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521] gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521] Length = 341 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 37/229 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + + R+ H LLF G G GK + A + P F Sbjct: 28 YRPATLDDLVSHKDITSTIQNFIDKNRLPH-LLFYGPPGTGKTSTILAMARKIF-GPQFR 85 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + LN + V+ ++I+ S+ Sbjct: 86 NSVLE----------------------------LNASDDRGIDVVR-EQIKSFASTKSVF 116 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ G +++I++D D M + A AL + +E+ + V F +I + I+ I+SRC + Sbjct: 117 SSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFR 176 Query: 186 FNSLS----ENNLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 FN L E+ L +E + D K +K+ + G + RA+ +L Sbjct: 177 FNPLELDQVEDRLNHVIESEGCNITQDGKEALLKL-SRGDMRRALNVLQ 224 >gi|47565320|ref|ZP_00236362.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9241] gi|47557674|gb|EAL16000.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9241] Length = 130 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID V ++ +A N+LLK+LEEPP V+FIL + S + TI SRC KF ++ L Sbjct: 3 IIDEVHMLSNSAFNSLLKTLEEPPAHVIFILATTDSQKVPKTIISRCQQFKFRNIP---L 59 Query: 195 YKALEQLKIMGWD 207 +++LK + D Sbjct: 60 QAMIDRLKFISND 72 >gi|325690661|gb|EGD32662.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK115] Length = 296 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 18/193 (9%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVQNFSQSGLEGSRQVFIICDADRMHVNAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 IL TIRSR F +SL ++ L K+ +L + + + + A+ Sbjct: 145 ADEQLILPTIRSRTQVYHFLKNTAVLQHSLEQDGLIKSRAEL-LAAYSQTQSEAESLAHN 203 Query: 220 SVARAIKILHYDCDKIISSYIDLIHIPRQEY-ALQKMQQIADELLSQDQKIAFDFLIEFI 278 + A L +C++ + D + Q + + ++ ++AD+ Q+Q F L Sbjct: 204 N---AFFELVSECERFVK---DFQNRSSQAFLQVSRLAKLADDKEKQEQ--VFKLLEVLF 255 Query: 279 LKEICKSAKAAAL 291 KEI + AL Sbjct: 256 YKEIATESGRQAL 268 >gi|149280101|ref|ZP_01886225.1| DNA polymerase III gamma/tau subunit [Pedobacter sp. BAL39] gi|149229115|gb|EDM34510.1| DNA polymerase III gamma/tau subunit [Pedobacter sp. BAL39] Length = 382 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 27/204 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA----------GHVLQNPD 63 + G E++++ L Q R+ HA LF +G G L YA G Sbjct: 6 IIGQEEVKEQLLQTVAENRVSHAQLFLSSEGSGALPLAIAYAQYINCLDKRTGDSCGECS 65 Query: 64 FSKAPVRMCNPDP--CSPFVKQMASHALHDFL--YLSYSLNP---KTGKWRTV------- 109 + R +PD PF + D L + S +N WR+ Sbjct: 66 SCRKYERYIHPDLHFSYPFFASKDARVAVDVLDEWRSMLMNDPYFDMDIWRSNLNAENKQ 125 Query: 110 --ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I + E I LS A +V+++ + +++ N+LLK +EEPP+ LFIL++ Sbjct: 126 ANINIAECHDIIKKLSFKAFEAETKVLIMWLPEYLDKEG-NSLLKIIEEPPKNTLFILVA 184 Query: 168 HASPTILSTIRSRCLSIKFNSLSE 191 + ILST+ SR +K LS+ Sbjct: 185 NNQEQILSTLLSRTQIVKIPKLSD 208 >gi|302552517|ref|ZP_07304859.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes DSM 40736] gi|302470135|gb|EFL33228.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes DSM 40736] Length = 627 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGK-TTSARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGPT----PTPCGECQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPARSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + L L ++ Sbjct: 173 HHYPFRLVPPGTLRDYLAEV 192 >gi|212704000|ref|ZP_03312128.1| hypothetical protein DESPIG_02053 [Desulfovibrio piger ATCC 29098] gi|212672505|gb|EEB32988.1| hypothetical protein DESPIG_02053 [Desulfovibrio piger ATCC 29098] Length = 297 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + VD IR ++ L + RV+++ V+ NAANALLK+LEEP F+L++ Sbjct: 101 ALNVDNIRELKQKLRDAPHGQGRRVVLLMGVEQNRSNAANALLKALEEPSPSSCFVLLAA 160 Query: 169 ASPTILSTI--RSRCLSIKF-NSLSENNLYKALEQLKIMGWDSKRD-FVKIAAYGSV-AR 223 +L T+ RS CL++ + +SLS + + E+ + S R F + A ++ AR Sbjct: 161 QREQLLPTLVSRSLCLTLPWPDSLSRDPALQPWEEALALFITSGRGLFERTGARNALDAR 220 Query: 224 AIKILHYDCDKIISSYI 240 + C K +S + Sbjct: 221 LAGQILLACQKSMSRVM 237 >gi|319946510|ref|ZP_08020746.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus australis ATCC 700641] gi|319747341|gb|EFV99598.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus australis ATCC 700641] Length = 299 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR + S + G +V ++ D M+ NAAN+LLK +EEP +V L++ Sbjct: 86 IIKTDRIRDLIQHFSQSGYEGSKQVFIVCDADRMHVNAANSLLKVIEEPQSEVHIFLLTA 145 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR + F Sbjct: 146 DEQLVLPTIKSRAQQVHF 163 >gi|325126245|gb|ADY85575.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 290 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD P +++ + D + N ++ I +D+IR ++ L+ + G R Sbjct: 57 PDGTCPACRRILAGNHPDVFLIDTEENKQS------IAIDQIRPLKQELAKSPLEGDRRY 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +I+ + AANALL LEEP V+ LI++ IL TI+SR I F+ Sbjct: 111 FVINRAQKLTLPAANALLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFS 164 >gi|189426944|ref|YP_001950043.1| DNA polymerase III gamma/tau subunit-like protein [Ralstonia phage RSL1] gi|189233256|dbj|BAG41613.1| DNA polymerase III gamma/tau subunit-like protein [Ralstonia phage RSL1] Length = 362 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 110/290 (37%), Gaps = 59/290 (20%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P R+ G E I L SG++ A+ F G GK TLG R H L Sbjct: 8 RKYRPTTLDRVIGQEKIVTRLKGMLSSGKIPSAIAFFGPPSAGKTTLG-RCVAHAL---- 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ PV K ++ V DE R + Sbjct: 63 -NELPVE-------------------------------KQTDYKEVDAADE-RGVDAVRD 89 Query: 124 LTANTGYW-----RVIMIDPVDGM--NRNAANALLKSLEEPPQKVLFILISHASPTILST 176 L N+ + R+I+ID + N+ AA ALLK+LEEP L+I+ S P T Sbjct: 90 LIRNSRFRPQRNKRIILIDEAQQIVSNQVAAQALLKTLEEPSPDTLWIICSM-EPEKFGT 148 Query: 177 IR------SRCLSIKFNSLSENNLYK-ALEQLKIMG----WDSKRDFVKIAAYGSVARAI 225 R SRC SE++L K A+ K G D +R +K G R + Sbjct: 149 TRTGKAILSRCTQFVLQEPSESDLLKQAVRIAKGEGMSYAMDEERTVLKALVRG-CNREM 207 Query: 226 KILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + L + Y L P++ + + + + S D ++A D +I Sbjct: 208 RTLANLMQALQQYYEGLDKKPKK-LGTEHLADLISSVESPDDELAADLMI 256 >gi|167836305|ref|ZP_02463188.1| DNA polymerase III subunit delta' [Burkholderia thailandensis MSMB43] Length = 223 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 25/171 (14%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 R H HALL G+ GIGK A G + + P + P C C+ F + +H Sbjct: 17 RAHWPHALLLYGQAGIGKLAFAQHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHP 72 Query: 89 LHDFLY---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGY 130 + + L+ L PK K RT I ++++R + F + ++ G Sbjct: 73 DYRIVVPEALAAELPGAADEPKAADADEGGKKTRTPSKEIKIEQVRGLVDFCGIASHRGG 132 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV+++ P + +N AANALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 133 ARVVVLYPAEALNVAAANALLKTLEEPPSGVVFLLVSARIDRLLPTIVSRC 183 >gi|29830693|ref|NP_825327.1| DNA polymerase III subunits gamma and tau [Streptomyces avermitilis MA-4680] gi|29607805|dbj|BAC71862.1| putative DNA polymerase III gamma and tau subunit [Streptomyces avermitilis MA-4680] Length = 846 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G E + L Q + R++HA LF G +G GK T R L + Sbjct: 8 RRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGK-TTSARILARCL---N 63 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P P PC + +A + + G VD+ R +R Sbjct: 64 CEQGPT----PTPCGACQSCQDLARNGPGSIDVIEIDAASHGG-------VDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPAGSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L + L + I D V A GSV ++ ++ Sbjct: 173 HHYPFRLVPPGTLREYLGDVCGRENIPVADGVLPLVVRAGGGSVRDSMSVM 223 >gi|302388613|ref|YP_003824434.1| DNA polymerase III gamma/tau subunits [Thermosediminibacter oceani DSM 16646] gi|302199241|gb|ADL06811.1| DNA polymerase III gamma/tau subunits [Thermosediminibacter oceani DSM 16646] Length = 271 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +++IR + S G ++ +I M ++A N LLK+LE+PP +F+L++ Sbjct: 67 IKIEKIRNVILSASQPPIEGRRKIYVIHEAGKMTQDAQNTLLKTLEDPPTASIFLLLTQN 126 Query: 170 SPTILSTIRSRCLSIKFNSLSENNL 194 +L T+ SRC + ++ L E+ + Sbjct: 127 IKNLLPTVVSRCQILDYSKLDESEI 151 >gi|104774435|ref|YP_619415.1| hypothetical protein Ldb1629 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423516|emb|CAI98418.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 290 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD P +++ + D + N ++ I +D+IR ++ L+ + G R Sbjct: 57 PDGTCPACRRILAGNHPDVFLIDTEENKQS------IAIDQIRPLKQELAKSPLEGDRRY 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +I+ + AANALL LEEP V+ LI++ IL TI+SR I F+ Sbjct: 111 FVINHAQKLTLPAANALLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFS 164 >gi|116514534|ref|YP_813440.1| DNA replication ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093849|gb|ABJ59002.1| DNA replication ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 290 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD P +++ + D + N ++ I +D+IR ++ L+ + G R Sbjct: 57 PDGTCPACRRILAGNHPDVFLIDTEENKQS------IAIDQIRPLKQELAKSPLEGDRRY 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +I+ + AANALL LEEP V+ LI++ IL TI+SR I F+ Sbjct: 111 FVINHAQKLTLPAANALLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFS 164 >gi|171741491|ref|ZP_02917298.1| hypothetical protein BIFDEN_00576 [Bifidobacterium dentium ATCC 27678] gi|171277105|gb|EDT44766.1| hypothetical protein BIFDEN_00576 [Bifidobacterium dentium ATCC 27678] Length = 851 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + G++ HA LF G +G GK + A V Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCEKG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + +A+ + G VD+ R +R Sbjct: 67 PTSHPCGECE------SCRDLATGGPGSIDVVEIDAASHNG-------VDDARELRERAG 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 114 FAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHH 173 Query: 184 IKFNSLSENNLYKALEQL 201 F + + + LE++ Sbjct: 174 YPFRLVPQEVMGPYLERI 191 >gi|295676548|ref|YP_003605072.1| DNA polymerase III, delta prime subunit [Burkholderia sp. CCGE1002] gi|295436391|gb|ADG15561.1| DNA polymerase III, delta prime subunit [Burkholderia sp. CCGE1002] Length = 344 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 29/170 (17%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQN-----PDFSKAPVRMC----------NPD---- 75 HALL G+ GIGK R+A H+ Q P P C +PD Sbjct: 22 HALLLHGQAGIGK----LRFAQHLAQGLLCEAPQPGGEPCGSCVACNWFAQGNHPDYRIV 77 Query: 76 -PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLTANTGYW 131 P + + ++ D + K K RT I +++IR + F+ + ++ G Sbjct: 78 VPEALAAEAGLANGAEDKAEKAEGDEGK--KTRTPSKEIKIEQIRGLLDFVGVGSHRGGA 135 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 136 RVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRC 185 >gi|227894604|ref|ZP_04012409.1| DNA polymerase III, delta subunit [Lactobacillus ultunensis DSM 16047] gi|227863595|gb|EEJ71016.1| DNA polymerase III, delta subunit [Lactobacillus ultunensis DSM 16047] Length = 285 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 34/212 (16%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ+ S D L + + + + +D++R ++ L+ + R Sbjct: 57 PDGTCRNCKQILSGNHPDVLLVG-------PEGKQTLGIDQVRPLKEELAKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS----- 188 I+ + +AAN LL LEEP V+ ILI++ S IL TIRSR I F++ Sbjct: 110 FFINEAQKLTLSAANGLLNLLEEPVAPVVTILITNNSDQILPTIRSRTQIINFDNGEKPG 169 Query: 189 -----LSENNLYKALEQLKIMGWDSKRD------FVKIAAYGSVARAIKILHYDCDKIIS 237 L EN K+ +++ +G KRD + ++ + S+A + K++S Sbjct: 170 SKTAILLENGFSKS--EIEELGNLEKRDQEIKYFYQELLEHNSLALVSAHKLSENAKLVS 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKI 269 Q Y L K++ +A+ L+ QK+ Sbjct: 228 ---------EQRYILVKLKLLAEHDLTNVQKM 250 >gi|325978912|ref|YP_004288628.1| DNA polymerase III subunit delta' [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178840|emb|CBZ48884.1| DNA polymerase III subunit delta' [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 291 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPF 80 K +Q S RM+HA LF G+ F +A ++ A R C N P Sbjct: 12 KEFNQILKSDRMNHAYLFSGDFA------SFDFALYL--------AKSRFCENLQDGLPC 57 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + + + + + +G+ VI D IR + S + G +V +I + Sbjct: 58 GECRECQLIAESEFSDVKIVKPSGQ---VIKTDTIRELMRDFSRSGFEGKSQVFIIQDCE 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 115 KMHVNAANSLLKFIEEPQSSSYMILLTSDENKVLPTIKSRTQIFRF 160 >gi|322690330|ref|YP_004219900.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. longum JCM 1217] gi|320455186|dbj|BAJ65808.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. longum JCM 1217] Length = 970 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|291517614|emb|CBK71230.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. longum F8] Length = 970 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + L + G++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSP--FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC K +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECESCKDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LE + Sbjct: 172 HHYPFRLVPQEVMGPYLETI 191 >gi|283455169|ref|YP_003359733.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium Bd1] gi|283101803|gb|ADB08909.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium Bd1] Length = 851 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + G++ HA LF G +G GK + A V Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCEKG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + +A+ + G VD+ R +R Sbjct: 67 PTSHPCGECE------SCRDLATGGPGSIDVVEIDAASHNG-------VDDARELRERAG 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 114 FAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHH 173 Query: 184 IKFNSLSENNLYKALEQL 201 F + + + LE++ Sbjct: 174 YPFRLVPQEVMGPYLERI 191 >gi|225465294|ref|XP_002268959.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1219 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ LF+G +G GK + + + Sbjct: 447 LSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCL 506 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C CS F+ + H + K G + R+RY Sbjct: 507 AVGETKPCGICRE--CSDFISGKSRH------FREIDGTNKKG----------MDRMRYL 548 Query: 122 L-----SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 L + ++V +ID + A LK LEEPP +V+FI I+ + T Sbjct: 549 LKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRT 608 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 + SRC FN + E ++ L ++ Sbjct: 609 VLSRCQKYLFNKIKEGDIVARLRKI 633 >gi|167569637|ref|ZP_02362511.1| DNA polymerase III subunit delta' [Burkholderia oklahomensis C6786] Length = 216 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 23/170 (13%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCS-------PFV 81 R H HALL G+ GIGK A G + + P S P C C+ P Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPHESGEPCGACA--ACTWFEQGNHPDY 74 Query: 82 KQMASHALHDFLYLSYSLNPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYW 131 + + AL L + PK G K +T I ++++R + F + ++ G Sbjct: 75 RIVVPEALAGELP-GAADEPKAGDADEGGKKTKTPSKEIKIEQVRALVDFCGIASHRGGA 133 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV+++ P + +N AANALLK+LEEP V+F+L+S +L TI SRC Sbjct: 134 RVVVLYPAEALNVAAANALLKTLEEPSAGVVFLLVSARIDRLLPTIVSRC 183 >gi|161527748|ref|YP_001581574.1| replication factor C [Nitrosopumilus maritimus SCM1] gi|160339049|gb|ABX12136.1| Replication factor C [Nitrosopumilus maritimus SCM1] Length = 316 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 35/170 (20%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H LLF G G+GK T + +L D++K Sbjct: 39 MPH-LLFSGSAGVGKTTTALCISRQIL--GDYAK-------------------------- 69 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALL 151 Y+L R + V E +++ F +++I++D D M +A AL Sbjct: 70 ---DYTLELNASDERGIGMVRE--KVKKFSRYAGMADVPFKIIILDEADEMTSDAQTALR 124 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + +E+ + FILI++ I+ I+SRC + KF ++ E ++ K LE++ Sbjct: 125 RIIEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVPEEDVIKRLEEI 174 >gi|262277218|ref|ZP_06055011.1| putative DNA polymerase III [alpha proteobacterium HIMB114] gi|262224321|gb|EEY74780.1| putative DNA polymerase III [alpha proteobacterium HIMB114] Length = 258 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 22/170 (12%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 ++ G E K + ++ L+ +G GIGK T +L Sbjct: 7 NKVIGFERELKLFKNLFDIKKLPQTLMIQGLDGIGKYTFCLNLVSLLL------------ 54 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 K+ ++ + + S L K + +D+IR I F L + Sbjct: 55 ----------KKNNTNIEDELISDSNVLILKNESSEQAVKIDDIRNIINFCQLKSFNDLP 104 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + I+I +N N+ NALLK +E+P + + FI S + T+ SRC Sbjct: 105 KFIIIKNSQFLNVNSVNALLKLIEQPGENIYFIFTSSLIDQNVETLMSRC 154 >gi|170742371|ref|YP_001771026.1| DNA polymerase III subunits gamma and tau [Methylobacterium sp. 4-46] gi|168196645|gb|ACA18592.1| DNA polymerase III, subunits gamma and tau [Methylobacterium sp. 4-46] Length = 605 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 25/209 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT--------LGF 52 ++ R + P L G + + L+ + +GR+ A + G +G+GK T L + Sbjct: 31 VLARKYRPQSFDDLIGQGAMVRTLANAFEAGRIPQAWMLTGVRGVGKTTTARILARGLNY 90 Query: 53 RYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 AG P + P + C+ M S + D L + + + TG + Sbjct: 91 ALAGDAKAGPTI-RMPTLGLH---CAAI---MESRHI-DVLEMDAASH--TG-------I 133 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D++R+I + + ++V ++D V ++ A NA LK+LEEPP F+ + Sbjct: 134 DDVRQIIDGIRYAPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRK 193 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRC + L L ++ Sbjct: 194 VPVTILSRCQRFDLRRVEAGTLVAHLHRI 222 >gi|253827492|ref|ZP_04870377.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] gi|313141700|ref|ZP_07803893.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] gi|253510898|gb|EES89557.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] gi|313130731|gb|EFR48348.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] Length = 211 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S A+TGY V++ + N A NALLK LEEPP +V FIL + +L TIRSR Sbjct: 47 SYIASTGYKFVLI--AANSFNVYAQNALLKILEEPPSQVCFILFARMKSQLLPTIRSRMP 104 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA--YGSVARAIKI----LHYDCDK 234 I N L + L ++ + F+K + +G+ +KI L+ DC K Sbjct: 105 II--NQLKKEKLSPFSLSIRTLALKDIYPFLKEKSKEFGTNPTQLKIEIQSLYLDCIK 160 >gi|154486523|ref|ZP_02027930.1| hypothetical protein BIFADO_00338 [Bifidobacterium adolescentis L2-32] gi|154084386|gb|EDN83431.1| hypothetical protein BIFADO_00338 [Bifidobacterium adolescentis L2-32] Length = 814 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/267 (21%), Positives = 99/267 (37%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + ++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDENKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC + +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECASCRDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQLKI----------------MGWDSKRDFVKI-------AAY 218 F + + + LEQ+ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLEQICADEHIEAEAGVLRLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYIDLI 243 G + A+ +L + D +I ID + Sbjct: 232 GKIPYDSAVALLGFTPDALIGEAIDAV 258 >gi|119025155|ref|YP_909000.1| DNA polymerase III subunits gamma and tau [Bifidobacterium adolescentis ATCC 15703] gi|118764739|dbj|BAF38918.1| DNA polymerase III subunit gamma_tau [Bifidobacterium adolescentis ATCC 15703] Length = 814 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/267 (21%), Positives = 99/267 (37%), Gaps = 42/267 (15%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + ++ HA LF G +G GK + A V + Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDENKLTHAYLFSGPRGCGKTSSARILARCV----N 62 Query: 64 FSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P PC + +A+ + G VD+ R +R Sbjct: 63 CAKGPTSH----PCGECASCRDLATGGPGSIDVVEIDAASHNG-------VDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 112 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQLKI----------------MGWDSKRDFVKI-------AAY 218 F + + + LEQ+ G S RD + + A Sbjct: 172 HHYPFRLVPQEVMGPYLEQICADEHIEAEAGVLRLAMRAGGGSVRDTLSVLDQLMVGAVD 231 Query: 219 GSVA--RAIKILHYDCDKIISSYIDLI 243 G + A+ +L + D +I ID + Sbjct: 232 GKIPYDSAVALLGFTPDALIGEAIDAV 258 >gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii DSM 2375] gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM 2374] gi|222435032|gb|EEE42197.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii DSM 2375] gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM 2374] Length = 315 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 52/309 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I L +Y M + L+F G G+GK T +L Sbjct: 17 IIGQKQIVNRLQKYVGEESMPN-LMFTGPAGVGKTTTAIALVKAIL-------------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 + +FL L+ S +D +R I+ F L +R Sbjct: 62 -----------GEYWRQNFLELNAS---------DARGIDTVRNDIKNFCRLKPVGAPFR 101 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D VD M ++A +AL + +E + FIL + S I+ I+SRC +F + Sbjct: 102 IIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGE 161 Query: 193 NLYKALEQL-KIMGW---DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + L+ + G+ D + ++ A G + +A+ +L + D ++ Sbjct: 162 EIANRLKYICTSEGFEYTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVS 221 Query: 249 EYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSL 308 + Q + + + LS D A + L E ++ + SG+ D ++QIY + Sbjct: 222 KAKPQDVHNLITKALSGDFMGARNLLRETMVLQ--------GTSGE----DMVSQIYQDV 269 Query: 309 VKRVHAFSM 317 KRV M Sbjct: 270 SKRVFEGKM 278 >gi|239617286|ref|YP_002940608.1| DNA polymerase III gamma/tau subunits-like protein [Kosmotoga olearia TBF 19.5.1] gi|239506117|gb|ACR79604.1| DNA polymerase III gamma/tau subunits-like protein [Kosmotoga olearia TBF 19.5.1] Length = 343 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + P +G I +D+I + FL G + ++I V+ + A+NA LK+LEEPP Sbjct: 60 VQPSSGN----IGIDDILDVERFLLHKPANGKKKYVVIHRVERLTPEASNAFLKTLEEPP 115 Query: 159 QKVLFILISHASPTILSTIRSRCL 182 + IL + + ++L TIRSR + Sbjct: 116 EFATLILTTTSWESLLPTIRSRSI 139 >gi|83720641|ref|YP_442676.1| DNA polymerase III subunit delta' [Burkholderia thailandensis E264] gi|257138889|ref|ZP_05587151.1| DNA polymerase III subunit delta' [Burkholderia thailandensis E264] gi|83654466|gb|ABC38529.1| DNA polymerase III, delta prime subunit [Burkholderia thailandensis E264] Length = 344 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPF-------- 80 R H HALL G+ GIGK A G + + P + P C C+ F Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWFEQGNHPDY 74 Query: 81 ---VKQMASHALHDFLYLSYSLNPKTGKWRTV-----ITVDEIRRIRYFLSLTANTGYWR 132 V + + L + + G +T I ++++R + F + ++ G R Sbjct: 75 RIVVPEALAAELPGAADEPKAADADEGGKKTKTPSKEIKIEQVRALVDFCGIASHRGGAR 134 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V+++ P + +N AANALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 135 VVVLYPAEALNVAAANALLKTLEEPPSGVVFLLVSARIDRLLPTIVSRC 183 >gi|306831965|ref|ZP_07465120.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425891|gb|EFM29008.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 291 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDPCSPF 80 K +Q S RM+HA LF G+ F +A ++ A R C N P Sbjct: 12 KEFNQILKSDRMNHAYLFSGDFA------SFDFALYL--------AKSRFCENLQDGLPC 57 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + + + + + +G+ VI D IR + S + G +V +I + Sbjct: 58 GECRECQLIAENEFSDVKIVKPSGQ---VIKTDTIRELMRDFSRSGFEGKSQVFIIQDCE 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 M+ NAAN+LLK +EEP IL++ +L TI+SR +F Sbjct: 115 KMHVNAANSLLKFIEEPQSSSYMILLTSDENKVLPTIKSRTQIFRF 160 >gi|323344735|ref|ZP_08084959.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] gi|323094005|gb|EFZ36582.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] Length = 375 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 29/243 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL----QNPDFSKAPV 69 + G E+ ++ L Q R+ HA++F G G GK L +A +L + A Sbjct: 6 VIGQEEAKQRLLQLVHEHRVPHAMMFCGPDGCGKLPLALAFASFLLGEREDDSSIGNAEA 65 Query: 70 ---RMCNPDP--CSPFVKQMASHALH-----DFLYLSYSL---NP-----------KTGK 105 R +PD P ++ + A H DF ++L P K Sbjct: 66 MLRRWEHPDLHFSYPVIRPAGTSADHKMVSDDFAREWHALLAEGPYITIDQWLDAMKAAN 125 Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 + I E + LSL ++ G ++V +I + MN AN LLK LEEPP + +FI+ Sbjct: 126 QQAQIYAAESDELTRKLSLKSSQGGYKVSLIWLPERMNAECANKLLKLLEEPPLQTVFIM 185 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 + +L TIRSR I + ++ +AL + + + ++ R ++A GS +A+ Sbjct: 186 VCEEPEKLLDTIRSRVQRIDMKRIGNEDIERALIEQRGIEQETARRIARVAN-GSWLKAL 244 Query: 226 KIL 228 + L Sbjct: 245 ETL 247 >gi|78213887|ref|YP_382666.1| DNA polymerase III subunit delta' [Synechococcus sp. CC9605] gi|78198346|gb|ABB36111.1| DNA polymerase III, delta prime subunit [Synechococcus sp. CC9605] Length = 314 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS----KAPV 69 L G LS GR+ A LF G +G+G+ R+ +L + S + + Sbjct: 8 LIGQPLAVDLLSAALAQGRVAPAYLFAGPEGVGRQLAAVRFFEGLLADGQPSVRERRRLL 67 Query: 70 RMCNPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PD P ++ + A + LS P+ + +++IR I L+ Sbjct: 68 ERNHPDLLWVEPTYQHQGRLLTRAEAEEAGLSRRTPPQ-------LRLEQIRDIGRCLAR 120 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I+ + M AANALLK+LEEP VL IL++ A +LSTIRSRC I Sbjct: 121 QPVEAKRGMVVIEAAEAMAEAAANALLKTLEEPGHGVL-ILLTSAPERLLSTIRSRCQLI 179 Query: 185 KFNSLSENNLYKALEQ 200 +F L++ + LE+ Sbjct: 180 RFLRLNQEAMALVLER 195 >gi|113953170|ref|YP_731780.1| DNA polymerase III subunit delta' [Synechococcus sp. CC9311] gi|113880521|gb|ABI45479.1| DNA polymerase III, delta' subunit [Synechococcus sp. CC9311] Length = 323 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ A +F G +G+G+ R+ V+ ++ R + P + + H Sbjct: 29 RLAPAYVFAGPEGVGRRLAVLRFLEGVISEGQCNQRQRRRLA-ERNHPDLLWVEPSYSHQ 87 Query: 92 FLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 ++ S + G R ++ +D+IR I FLS +++++ + M AAN Sbjct: 88 GRLITRSEAEEAGVSRRTPPLVRLDQIRDISRFLSRQPLESSRGLVVLEEPEAMAEAAAN 147 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ALLK+LEEP VL IL+S A +LSTIRSRC I+ LS ++ L++L Sbjct: 148 ALLKTLEEPGHGVL-ILLSAAPERLLSTIRSRCQLIRLIQLSAEDMQSVLQRL 199 >gi|312890475|ref|ZP_07750011.1| DNA polymerase III gamma/tau subunit [Mucilaginibacter paludis DSM 18603] gi|311296933|gb|EFQ74066.1| DNA polymerase III gamma/tau subunit [Mucilaginibacter paludis DSM 18603] Length = 381 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 41/211 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV--------------- 58 + G E+I++ L R+ HA LF G +G G L YA ++ Sbjct: 6 IVGQEEIKQRLINTVKENRVSHAQLFLGPEGSGSLALAIAYAQYLSCEDKQENDSCGVCS 65 Query: 59 -------LQNPD--FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV 109 L +PD FS D FV+Q AL YLS L WR+ Sbjct: 66 SCRKYQKLVHPDLHFSYPFFAKHKDDTALNFVEQW-REALLKNPYLSLDL------WRSY 118 Query: 110 ---------ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 I + E +I LS ++++++ + +++ NALLK +EEP Sbjct: 119 LDAENKQANINIAECHQIIKKLSFKPFESAYKILILWLPEYLDK-TGNALLKIIEEPQPN 177 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSE 191 LF+L++ IL+TI SR IK L++ Sbjct: 178 TLFLLVAQNQDQILNTILSRTQLIKVPCLND 208 >gi|225439256|ref|XP_002263213.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera] Length = 354 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 45/75 (60%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T +RV++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+I Sbjct: 125 TKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNI 184 Query: 185 KFNSLSENNLYKALE 199 + N+ +E + K LE Sbjct: 185 RINAPTEEQITKVLE 199 >gi|167893849|ref|ZP_02481251.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 7894] Length = 218 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 25/171 (14%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 R H HALL G+ GIGK A G + + P + P C C+ F + +H Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHP 72 Query: 89 LHDFLY---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGY 130 + + L+ L PK K RT I ++++R + F + ++ G Sbjct: 73 DYRIVVPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGG 132 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV+++ P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 133 ARVVVLYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|306823770|ref|ZP_07457144.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium ATCC 27679] gi|309802091|ref|ZP_07696201.1| DNA polymerase III, subunit gamma and tau [Bifidobacterium dentium JCVIHMP022] gi|304552768|gb|EFM40681.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium ATCC 27679] gi|308221292|gb|EFO77594.1| DNA polymerase III, subunit gamma and tau [Bifidobacterium dentium JCVIHMP022] Length = 851 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L + G++ HA LF G +G GK + A V Sbjct: 7 RRYRPDTFDGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCEKG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + +A+ + G VD+ R +R Sbjct: 67 PTSHPCGECE------SCRDLATGGPGSIDVVEIDAASHNG-------VDDARELRERAG 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 114 FAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHH 173 Query: 184 IKFNSLSENNLYKALEQL 201 F + + + LE++ Sbjct: 174 YPFRLVPQEVMGPYLERI 191 >gi|269859750|ref|XP_002649599.1| replication factor C subunit [Enterocytozoon bieneusi H348] gi|220066962|gb|EED44431.1| replication factor C subunit [Enterocytozoon bieneusi H348] Length = 349 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 32/235 (13%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-PDFSKAPVRMCNPD 75 H DI L + + R L+F G G K TL F + + P F K + Sbjct: 18 HHDITALLQCF--TLRTVPNLIFYGSVGSNKKTLVFSLINSLYKAYPQFQKITTEL---- 71 Query: 76 PCSPFVKQMASHALHDFLYLSYS----LNPKT--GKWRTVI-----TVDEIRRIRYFLSL 124 Q+ + D YL + +NP K R V+ V E + I FL+ Sbjct: 72 -------QINGSRI-DVSYLESNDVILINPSIYKNKDRVVVQNIIKKVAESKPITSFLN- 122 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ GY R I+ID + + ++A AL ++E+ +I TI+ I+SR L I Sbjct: 123 SSFHGY-RTILIDQAENLTKDAQAALRITMEQYSSYFKIFMICTNINTIIEPIKSRSLLI 181 Query: 185 KFNSLSENNLYKALEQLKIM-GWDSKRDFVK---IAAYGSVARAIKILHYDCDKI 235 + +EN L LE + + G++ D +K I + G RAI +L C + Sbjct: 182 RCRQFAENELITILETISLKEGYNISLDILKDIAINSNGDCGRAISLLEIYCQTV 236 >gi|186475809|ref|YP_001857279.1| DNA polymerase III subunit delta' [Burkholderia phymatum STM815] gi|184192268|gb|ACC70233.1| DNA polymerase III, delta prime subunit [Burkholderia phymatum STM815] Length = 349 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 35/200 (17%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS----------- 78 R H HALL G+ GIGK R+A H+ Q A + N +PC Sbjct: 17 RAHWPHALLLHGQAGIGK----LRFAQHLAQGLLCESA---LPNGEPCGTCAACNWFVQG 69 Query: 79 --PFVKQMASHALHDFLYLSYSL-------------NPKTGKWRTVITVDEIRRIRYFLS 123 P + + AL S + KT I ++++R + F Sbjct: 70 NHPDYRIVVPEALAAEAGFSSAAADEKAEKGDADDSGKKTRTPSKEIKIEQVRALLDFCG 129 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++ G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SRC Sbjct: 130 VGSHRGGVRVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRCRQ 189 Query: 184 IKFNSLSENNLYKALEQLKI 203 + S + L Q + Sbjct: 190 WPMTTPSPESATAWLAQQGV 209 >gi|327474589|gb|EGF19994.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK408] Length = 296 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSR 180 IL TIRSR Sbjct: 145 ADEQLILPTIRSR 157 >gi|228478365|ref|ZP_04062973.1| DNA polymerase III delta prime subunit [Streptococcus salivarius SK126] gi|228250044|gb|EEK09314.1| DNA polymerase III delta prime subunit [Streptococcus salivarius SK126] Length = 291 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 17/160 (10%) Query: 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 E+F SQ R+ HA LF G+ G + A + P C P Sbjct: 12 EEF-SQIIRENRLSHAYLFSGD--FGSLDMAIWLAQSRFCVTPENGLPCGHCRP------ 62 Query: 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 + +A D L G+ +I D IR++ S ++ G +V +I D Sbjct: 63 CRLIAQGDFSDV-----KLVEPQGQ---IIKTDTIRQLTREFSQSSFEGQAQVFIIRDAD 114 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 M+ NAAN+LLK +EEP ++ L++ +L TI+SR Sbjct: 115 KMHVNAANSLLKFIEEPQSQIYIFLLTADDSRMLPTIKSR 154 >gi|254520803|ref|ZP_05132859.1| DNA polymerase III gamma and tau [Clostridium sp. 7_2_43FAA] gi|226914552|gb|EEH99753.1| DNA polymerase III gamma and tau [Clostridium sp. 7_2_43FAA] Length = 539 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 23/221 (10%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I + + R+ HA LF G +G GK T +A L D Sbjct: 18 IVGQEHITTTVKNQILNDRIAHAYLFCGTRGTGKTTTAKVFA-KALNCLDLKDG------ 70 Query: 74 PDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 +PC+ +++ D L + N K R +I D+++ + Sbjct: 71 -EPCNECEMCRKINDGLAIDVTELDAASNNGVDKIRDII--DDVK-------YPPQEARF 120 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC F ++ Sbjct: 121 KVYIMDEVHMLSTGAVNAFLKTLEEPPNNVIFILATTDPQKLPITILSRCQRFDFKRINN 180 Query: 192 NN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 N L K + + + D + + + G++ A+ IL Sbjct: 181 NEITERLRKIVNEQNALADDKSLNLIARVSDGAMRDALSIL 221 >gi|167619730|ref|ZP_02388361.1| DNA polymerase III subunit delta' [Burkholderia thailandensis Bt4] Length = 237 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPF-------- 80 R H HALL G+ GIGK A G + + P + P C C+ F Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWFEQGNHPDY 74 Query: 81 ---VKQMASHALHDFLYLSYSLNPKTGKWRTV-----ITVDEIRRIRYFLSLTANTGYWR 132 V + + L + + G +T I ++++R + F + ++ G R Sbjct: 75 RIVVPEALAAELPGAADEPKAADADEGGKKTKTPSKEIKIEQVRALVDFCGIASHRGGAR 134 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V+++ P + +N AANALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 135 VVVLYPAEALNVAAANALLKTLEEPPSGVVFLLVSARIDRLLPTIVSRC 183 >gi|111035803|emb|CAL29430.1| DNA polymerase III tau subunit [Wolbachia endosymbiont of Onchocerca volvulus] Length = 494 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 40/269 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPDFSKAPVR 70 L G + + + L + ++ ++L G G+GK T R L P F P Sbjct: 15 LIGQDVLVRILKNAFTLNKIPQSILLSGSSGVGKTTTA-RIIALCLNCSLGPTFE--PCG 71 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 +C + C + ++H+ D + + + + ++++I+ I + + Sbjct: 72 LC--ENC--LAIKNSNHS--DVIEIDAA---------SHTSIEDIKVILENICYLPISSK 116 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++ +ID V ++ +A NALLK+LEEPP V FIL + + TI +RC Sbjct: 117 FKIYIIDEVHMLSGSAFNALLKTLEEPPSSVKFILATTEIKKMPITIIARC--------Q 168 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 +LYK + KI+G D + Y RA++++ + C + + + L++ Q Sbjct: 169 RFDLYK-IPATKIVG--RLNDIAQKENYLIENRALELIAHHCSNSMRNALFLMN---QAM 222 Query: 251 ALQKMQQIADELLSQ-----DQKIAFDFL 274 K I+ E +++ D+ I FD + Sbjct: 223 LYSKNGPISTEDVTEILGLVDEGIVFDLM 251 >gi|313631594|gb|EFR98854.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL N1-067] Length = 456 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 11/142 (7%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR F ++ ++ Sbjct: 2 IIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDI 61 Query: 195 YKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 LE + + + +D K V AA G + A+ +L D++IS + + + E Sbjct: 62 IGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYGSEEVTV---ED 114 Query: 251 ALQKMQQIADELLSQDQKIAFD 272 AL+ +A LL++ AFD Sbjct: 115 ALEITGSVAQGLLTKLVSAAFD 136 >gi|167823761|ref|ZP_02455232.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 9] Length = 198 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|167738166|ref|ZP_02410940.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 14] Length = 190 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|126642101|ref|YP_001085085.1| DNA polymerase III tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii ATCC 17978] Length = 636 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + Sbjct: 34 VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 93 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKAL 198 + T+ SRCL L+ + + K L Sbjct: 94 KLPITVISRCLQFTLRPLAVDEITKHL 120 >gi|167581614|ref|ZP_02374488.1| DNA polymerase III subunit delta' [Burkholderia thailandensis TXDOH] Length = 288 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPF-------- 80 R H HALL G+ GIGK A G + + P + P C C+ F Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWFEQGNHPDY 74 Query: 81 ---VKQMASHALHDFLYLSYSLNPKTGKWRTV-----ITVDEIRRIRYFLSLTANTGYWR 132 V + + L + + G +T I ++++R + F + ++ G R Sbjct: 75 RIVVPEALAAELPGAADEPKAADADEGGKKTKTPSKEIKIEQVRALVDFCGIASHRGGAR 134 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V+++ P + +N AANALLK+LEEPP V+F+L+S +L TI SRC Sbjct: 135 VVVLYPAEALNVAAANALLKTLEEPPSGVVFLLVSARIDRLLPTIVSRC 183 >gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299] gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299] Length = 334 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 38/194 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G++D L+ +G M + L+F G GIGK T A H L P + Sbjct: 16 YRPTKIDDIVGNKDAVDRLTAIASTGNMPN-LIFTGPPGIGKTTSVLCLA-HTLLGPSYK 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 A L + + G +D +R +I+ F Sbjct: 74 DA--------------------------VLELNASDDRG-------IDAVRNKIKMFAQK 100 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G ++I++D D M A AL +++E F L +AS I+ I+SRC Sbjct: 101 KVTLPPGRHKIILLDEADSMTSAAQQALRRTMELYSSTTRFALACNASEKIIEPIQSRCA 160 Query: 183 SIKFNSLSENNLYK 196 ++F LS+ + + Sbjct: 161 IVRFTRLSDQEVLE 174 >gi|324993715|gb|EGC25634.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK405] gi|324994972|gb|EGC26885.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK678] gi|327462986|gb|EGF09307.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis SK1] Length = 296 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I D +R + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 85 NIIKTDRVRELVRNFSQSGLEGSRQVFIICDADRMHINAANSLLKVIEEPQSEIYIFLLT 144 Query: 168 HASPTILSTIRSR 180 IL TIRSR Sbjct: 145 ADEQLILPTIRSR 157 >gi|306829297|ref|ZP_07462487.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus mitis ATCC 6249] gi|304428383|gb|EFM31473.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus mitis ATCC 6249] Length = 296 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVAQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 IL TIRSR F E L LEQ Sbjct: 146 DEEKILPTIRSRTQIFNFKK-QEEKLIHQLEQ 176 >gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] gi|153797705|gb|EDN80125.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] Length = 967 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P ++ G E + + L + R+ HA LF G +G GK T A + Q Sbjct: 7 RRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNCAQG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C +++A+ + G VD+ R +R Sbjct: 67 P--TDTPCGQCE------SCRELATGGPGSLDVVEIDAASHGG-------VDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 112 ATFAPVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L L L I + V A GSV + +L D++++ Sbjct: 172 HHYPFRLVPPDVLGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVL----DQLMA 227 Query: 238 SYID 241 ID Sbjct: 228 GAID 231 >gi|163842075|ref|YP_001626480.1| DNA polymerase III subunits gamma and tau [Renibacterium salmoninarum ATCC 33209] gi|162955551|gb|ABY25066.1| DNA polymerase III subunit gamma/tau [Renibacterium salmoninarum ATCC 33209] Length = 812 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 21/221 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRM 71 + G E + + L R++HA LF G +G GK T A + Q+P + P Sbjct: 17 VIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCAQSP--TDTPCGS 74 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 C D C ++A+ + G VD+ R +R + + Sbjct: 75 C--DSCV----ELATGGPGSLDVIEIDAASHGG-------VDDARDLRERATFAPVRDRY 121 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID + NALLK +EEPP+ + FI + ++ TIRSR F + Sbjct: 122 KIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPEKVIGTIRSRTHHYPFRLVPP 181 Query: 192 NNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L L+ Q K+ V A GSV ++ +L Sbjct: 182 EPLMAYLQLLCDQEKVPVAPGVLSLVVRAGGGSVRDSLSVL 222 >gi|53719073|ref|YP_108059.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei K96243] gi|53723613|ref|YP_103079.1| DNA polymerase III subunit delta' [Burkholderia mallei ATCC 23344] gi|67640222|ref|ZP_00439037.1| DNA polymerase III, delta prime subunit [Burkholderia mallei GB8 horse 4] gi|76809523|ref|YP_333837.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 1710b] gi|121600516|ref|YP_993234.1| DNA polymerase III subunit delta' [Burkholderia mallei SAVP1] gi|124383982|ref|YP_001029321.1| DNA polymerase III subunit delta' [Burkholderia mallei NCTC 10229] gi|126451424|ref|YP_001080742.1| DNA polymerase III subunit delta' [Burkholderia mallei NCTC 10247] gi|126452739|ref|YP_001066583.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 1106a] gi|134277237|ref|ZP_01763952.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 305] gi|166998744|ref|ZP_02264598.1| DNA polymerase III, delta prime subunit [Burkholderia mallei PRL-20] gi|167910540|ref|ZP_02497631.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 112] gi|217421970|ref|ZP_03453474.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 576] gi|226197209|ref|ZP_03792786.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei Pakistan 9] gi|237812639|ref|YP_002897090.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei MSHR346] gi|242315042|ref|ZP_04814058.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1106b] gi|254178064|ref|ZP_04884719.1| DNA polymerase III, delta prime subunit [Burkholderia mallei ATCC 10399] gi|254179466|ref|ZP_04886065.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1655] gi|254189147|ref|ZP_04895658.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei Pasteur 52237] gi|254198135|ref|ZP_04904557.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei S13] gi|254200025|ref|ZP_04906391.1| DNA polymerase III, delta prime subunit [Burkholderia mallei FMH] gi|254206359|ref|ZP_04912711.1| DNA polymerase III, delta prime subunit [Burkholderia mallei JHU] gi|254260736|ref|ZP_04951790.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1710a] gi|254297347|ref|ZP_04964800.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 406e] gi|254358226|ref|ZP_04974499.1| DNA polymerase III, delta prime subunit [Burkholderia mallei 2002721280] gi|52209487|emb|CAH35439.1| putative DNA polymerase [Burkholderia pseudomallei K96243] gi|52427036|gb|AAU47629.1| DNA polymerase III, delta prime subunit [Burkholderia mallei ATCC 23344] gi|76578976|gb|ABA48451.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1710b] gi|121229326|gb|ABM51844.1| DNA polymerase III, delta prime subunit [Burkholderia mallei SAVP1] gi|124292002|gb|ABN01271.1| DNA polymerase III, delta prime subunit [Burkholderia mallei NCTC 10229] gi|126226381|gb|ABN89921.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1106a] gi|126244294|gb|ABO07387.1| DNA polymerase III, delta prime subunit [Burkholderia mallei NCTC 10247] gi|134250887|gb|EBA50966.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 305] gi|147749621|gb|EDK56695.1| DNA polymerase III, delta prime subunit [Burkholderia mallei FMH] gi|147753802|gb|EDK60867.1| DNA polymerase III, delta prime subunit [Burkholderia mallei JHU] gi|148027353|gb|EDK85374.1| DNA polymerase III, delta prime subunit [Burkholderia mallei 2002721280] gi|157807343|gb|EDO84513.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 406e] gi|157936826|gb|EDO92496.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei Pasteur 52237] gi|160699103|gb|EDP89073.1| DNA polymerase III, delta prime subunit [Burkholderia mallei ATCC 10399] gi|169654876|gb|EDS87569.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei S13] gi|184210006|gb|EDU07049.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1655] gi|217395712|gb|EEC35730.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 576] gi|225930588|gb|EEH26598.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei Pakistan 9] gi|237503299|gb|ACQ95617.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei MSHR346] gi|238520910|gb|EEP84366.1| DNA polymerase III, delta prime subunit [Burkholderia mallei GB8 horse 4] gi|242138281|gb|EES24683.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1106b] gi|243065098|gb|EES47284.1| DNA polymerase III, delta prime subunit [Burkholderia mallei PRL-20] gi|254219425|gb|EET08809.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 1710a] Length = 344 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|251780082|ref|ZP_04823002.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084397|gb|EES50287.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 30/188 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE I S HA L G+ GIGK+ + A +L K V + Sbjct: 2 REIIGHERIINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSIL-GLKGDKEFVDI 60 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N P S + VD+IR I +S Sbjct: 61 INYYPLS-----------------------------SSFGVDDIRNIIAEVSKKPFESDK 91 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ + M A NALLK++EEPP V IL+S + IL TI+SRC + K LS+ Sbjct: 92 KVLILHKCEKMTIQAQNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSK 151 Query: 192 NNLYKALE 199 ++ K +E Sbjct: 152 EDITKYIE 159 >gi|108885112|ref|NP_073090.2| DNA polymerase III subunits gamma and tau [Mycoplasma genitalium G37] gi|255660073|ref|ZP_05405482.1| DNA polymerase III subunits gamma and tau [Mycoplasma genitalium G37] gi|94730374|sp|P47658|DPO3X_MYCGE RecName: Full=DNA polymerase III subunit gamma/tau gi|84626167|gb|AAC71650.2| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium G37] gi|166079036|gb|ABY79654.1| DNA polymerase III, subunit gamma and tau [synthetic Mycoplasma genitalium JCVI-1.0] Length = 597 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 19/189 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNP 62 + + P+ ++ G E I K L ++ + +F GE+G GK T A + N Sbjct: 7 QKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCLNW 66 Query: 63 DFSKAPVRMCNP-DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + +CN D C K + +++ D + + + K G +++IR + Sbjct: 67 D----QIDVCNSCDVC----KSINTNSAIDIVEIDAA--SKNG-------INDIRELVEN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +V ++D + + LLK+LEE P VLFI + I TI SRC Sbjct: 110 VFNHPFTFKKKVYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRC 169 Query: 182 LSIKFNSLS 190 S F ++ Sbjct: 170 QSFFFKKIT 178 >gi|293399976|ref|ZP_06644122.1| DNA polymerase III, delta prime subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306376|gb|EFE47619.1| DNA polymerase III, delta prime subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 325 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 15/157 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ HA +F G G K + A ++L C C K++A++ D Sbjct: 25 KLAHAYMFSGPAGTMK-----KEAAYLLAQSLVCSTHGFACE---CCDTCKRIAANEFAD 76 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 Y+ G ++ D ++ + F T ++ ++D + +A N+LL Sbjct: 77 LKYID-------GTTTSIKKEDIVKLQKEFNKTGLETTGKKIYILDHAENATPDALNSLL 129 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 K LEEP + ILI +L TI SRC +I F + Sbjct: 130 KFLEEPTNDMTAILIVEQMDRVLPTIISRCQNIPFTA 166 >gi|126438921|ref|YP_001059315.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 668] gi|126218414|gb|ABN81920.1| DNA polymerase III, delta prime subunit [Burkholderia pseudomallei 668] Length = 344 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|329921008|ref|ZP_08277536.1| hypothetical protein HMPREF9210_0037 [Lactobacillus iners SPIN 1401G] gi|328935284|gb|EGG31764.1| hypothetical protein HMPREF9210_0037 [Lactobacillus iners SPIN 1401G] Length = 285 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLVCLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|309803492|ref|ZP_07697585.1| DNA polymerase III subunit delta' family protein [Lactobacillus iners LactinV 11V1-d] gi|308164376|gb|EFO66630.1| DNA polymerase III subunit delta' family protein [Lactobacillus iners LactinV 11V1-d] Length = 259 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|300811146|ref|ZP_07091658.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497850|gb|EFK32860.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 290 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD P +++ + D + N ++ I +D+IR ++ L+ + G R Sbjct: 57 PDGTCPACRRILAGNHPDVFLIDTEENKQS------IAIDQIRPLKQELAKSPLEGDRRY 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +I+ + AANA+L LEEP V+ LI++ IL TI+SR I F+ Sbjct: 111 FVINHAQKLTLPAANAMLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFS 164 >gi|300857645|ref|YP_003782628.1| DNA polymerase III subunit delta' [Corynebacterium pseudotuberculosis FRC41] gi|300685099|gb|ADK28021.1| DNA polymerase III delta' subunit [Corynebacterium pseudotuberculosis FRC41] gi|302205383|gb|ADL09725.1| DNA polymerase III subunit delta [Corynebacterium pseudotuberculosis C231] gi|302329937|gb|ADL20131.1| DNA polymerase III subunit delta [Corynebacterium pseudotuberculosis 1002] gi|308275621|gb|ADO25520.1| DNA polymerase III subunit delta [Corynebacterium pseudotuberculosis I19] Length = 400 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 24/155 (15%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M HA LF G G G++ +A L+ D A C P + + ++A D Sbjct: 36 MTHAWLFTGAPGSGRSVAAVAFA-AALECEDPHVAGCGRC------PQCRSVMANAHADV 88 Query: 93 LYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +++ P+ I+V+ +R + + G WRV+++D D + AANALL Sbjct: 89 VHIV----PR----ELSISVETMRAEVVEPAAKRPTVGRWRVVILDNADRLTDGAANALL 140 Query: 152 KSLEEPPQKVLFILISHAS------PTILSTIRSR 180 K++EEPP + +L + ++ PT+LS RSR Sbjct: 141 KTVEEPPAHTVIMLCAPSTDPTDIIPTLLS--RSR 173 >gi|309806633|ref|ZP_07700629.1| DNA polymerase III subunit delta' domain protein [Lactobacillus iners LactinV 03V1-b] gi|308166938|gb|EFO69121.1| DNA polymerase III subunit delta' domain protein [Lactobacillus iners LactinV 03V1-b] Length = 259 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|42559322|sp|O26343|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=mthRFC small subunit gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 321 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 36/187 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I L +Y M + L+F G G+GK T A +L Sbjct: 20 IVGQEHIIPRLKRYVEEKSMPN-LMFTGPAGVGKTTAALALAREIL-------------- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 + +FL L+ S +D +R I+ F L +R Sbjct: 65 -----------GEYWRQNFLELNAS---------DARGIDTVRTSIKNFCRLKPVGAPFR 104 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D VD M ++A +AL + +E + FIL + S I+ I+SRC +F L + Sbjct: 105 IIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGH 164 Query: 193 NLYKALE 199 + K LE Sbjct: 165 QIIKRLE 171 >gi|284163322|ref|YP_003401601.1| Replication factor C [Haloterrigena turkmenica DSM 5511] gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511] Length = 330 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 40/219 (18%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GHE+I L QY + + L+F G G GK T A + + D+ + Sbjct: 33 GHENIVPRLKQYVERDELPN-LMFAGPAGTGKTTAAVGIAREIYGD-DWRE--------- 81 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVI 134 +FL L+ S + G +D +R RI+ F + R+I Sbjct: 82 ---------------NFLELNAS--DQRG-------IDVVRDRIKDFARSSFGGYSHRII 117 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +D D + +A +AL +++E+ FIL + S I+ I+SRC +F L+E+ + Sbjct: 118 FLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAI 177 Query: 195 YKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILH 229 + ++ I D D + AA G + +AI L Sbjct: 178 EAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQ 216 >gi|332075548|gb|EGI86016.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae GA17545] Length = 233 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|259501360|ref|ZP_05744262.1| DNA-directed DNA polymerase III delta' subunit [Lactobacillus iners DSM 13335] gi|302190919|ref|ZP_07267173.1| DNA replication ATPase [Lactobacillus iners AB-1] gi|315653111|ref|ZP_07906036.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|259167213|gb|EEW51708.1| DNA-directed DNA polymerase III delta' subunit [Lactobacillus iners DSM 13335] gi|315489476|gb|EFU79113.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 285 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|148984676|ref|ZP_01817944.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP3-BS71] gi|149006391|ref|ZP_01830103.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP18-BS74] gi|149010422|ref|ZP_01831793.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP19-BS75] gi|168485885|ref|ZP_02710393.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC1087-00] gi|168494364|ref|ZP_02718507.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC3059-06] gi|169833216|ref|YP_001694388.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae Hungary19A-6] gi|182683880|ref|YP_001835627.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14] gi|221231706|ref|YP_002510858.1| putative DNA polymerase III, delta' subunit [Streptococcus pneumoniae ATCC 700669] gi|303254971|ref|ZP_07341050.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae BS455] gi|303259846|ref|ZP_07345821.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP-BS293] gi|303262260|ref|ZP_07348204.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS292] gi|303264682|ref|ZP_07350600.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397] gi|303267183|ref|ZP_07353050.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457] gi|303269431|ref|ZP_07355200.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458] gi|147762168|gb|EDK69130.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP18-BS74] gi|147764903|gb|EDK71832.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP19-BS75] gi|147923067|gb|EDK74182.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP3-BS71] gi|168995718|gb|ACA36330.1| DNA polymerase III subunit delta [Streptococcus pneumoniae Hungary19A-6] gi|182629214|gb|ACB90162.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14] gi|183570982|gb|EDT91510.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC1087-00] gi|183575632|gb|EDT96160.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC3059-06] gi|220674166|emb|CAR68689.1| putative DNA polymerase III, delta' subunit [Streptococcus pneumoniae ATCC 700669] gi|301794078|emb|CBW36482.1| putative DNA polymerase III, delta' subunit [Streptococcus pneumoniae INV104] gi|301799918|emb|CBW32497.1| putative DNA polymerase III, delta' subunit [Streptococcus pneumoniae OXC141] gi|302598051|gb|EFL65118.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae BS455] gi|302636583|gb|EFL67074.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS292] gi|302639051|gb|EFL69511.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP-BS293] gi|302641050|gb|EFL71428.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458] gi|302643298|gb|EFL73578.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457] gi|302645769|gb|EFL75998.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|15900816|ref|NP_345420.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae TIGR4] gi|111658125|ref|ZP_01408823.1| hypothetical protein SpneT_02000691 [Streptococcus pneumoniae TIGR4] gi|14972411|gb|AAK75060.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae TIGR4] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|312870941|ref|ZP_07731046.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] gi|311093631|gb|EFQ51970.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] Length = 285 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|225854441|ref|YP_002735953.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae JJA] gi|225722540|gb|ACO18393.1| DNA polymerase III subunit delta [Streptococcus pneumoniae JJA] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|213966044|ref|ZP_03394233.1| DNA polymerase III subunit delta [Corynebacterium amycolatum SK46] gi|213951339|gb|EEB62732.1| DNA polymerase III subunit delta [Corynebacterium amycolatum SK46] Length = 453 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 15/83 (18%) Query: 108 TVITV----DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 T+I+V DE+R Y + TA+ RV++I+ D +N +A+NALLK +EEPP + + Sbjct: 130 TIISVATVRDELRPWAYKMPTTADC---RVLIIEDADRLNESASNALLKVVEEPPLRTVI 186 Query: 164 ILISHASPTILS-----TIRSRC 181 I+ +PT + T+RSRC Sbjct: 187 IMC---APTTNAEDFSVTLRSRC 206 >gi|87125182|ref|ZP_01081028.1| DNA polymerase III, delta prime subunit [Synechococcus sp. RS9917] gi|86166951|gb|EAQ68212.1| DNA polymerase III, delta prime subunit [Synechococcus sp. RS9917] Length = 321 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 15/178 (8%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQN--PDFSKAPVRMCNPDPCSPFVKQMASHAL 89 R+ A L G G+G+ R+ VL + PD + P +V+ SH Sbjct: 26 RIAPAYLLHGPDGVGRRLAALRFLEGVLADGQPDSRQRRRLEARNHPDLLWVEPTYSH-- 83 Query: 90 HDFLYLSYSLNPKTGKWR---TVITVDEIRRIRYFLS---LTANTGYWRVIMIDPVDGMN 143 + S + G R + +++IR + FL+ L A G +++++ + M Sbjct: 84 -QGRLIPRSEAEEAGVNRRSPPQVRLEQIRELARFLARQPLEARRG---LVVLEEPEAMA 139 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 AANALLK+LEEP L IL+S A +L TIRSRC I+F LS +++ LE+L Sbjct: 140 EAAANALLKTLEEPGHG-LLILVSAAPERLLDTIRSRCQQIRFVRLSAGAMHQVLERL 196 >gi|188589337|ref|YP_001919634.1| DNA polymerase III subunit delta' [Clostridium botulinum E3 str. Alaska E43] gi|188499618|gb|ACD52754.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E3 str. Alaska E43] Length = 310 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 30/188 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE I S HA L G+ GIGK+ + A +L K V + Sbjct: 2 REIIGHERIINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSIL-GLKGDKEFVDI 60 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N P S + VD+IR I +S Sbjct: 61 INYYPLS-----------------------------SSFGVDDIRNIIAEVSKKPFESDK 91 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ + M A NALLK++EEPP V IL+S + IL TI+SRC + K LS+ Sbjct: 92 KVLILHKCEKMTIQAQNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSK 151 Query: 192 NNLYKALE 199 ++ K +E Sbjct: 152 GDITKYIE 159 >gi|332073267|gb|EGI83746.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae GA17570] Length = 233 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|148996973|ref|ZP_01824627.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP11-BS70] gi|149002483|ref|ZP_01827417.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP14-BS69] gi|168575598|ref|ZP_02721534.1| DNA polymerase III subunit delta [Streptococcus pneumoniae MLV-016] gi|225858733|ref|YP_002740243.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae 70585] gi|225861171|ref|YP_002742680.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae Taiwan19F-14] gi|237651111|ref|ZP_04525363.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae CCRI 1974] gi|237821890|ref|ZP_04597735.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae CCRI 1974M2] gi|298230559|ref|ZP_06964240.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254567|ref|ZP_06978153.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503052|ref|YP_003724992.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|307067592|ref|YP_003876558.1| DNA replication ATPase [Streptococcus pneumoniae AP200] gi|147756673|gb|EDK63713.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP11-BS70] gi|147759420|gb|EDK66412.1| DNA polymerase III, delta prime subunit [Streptococcus pneumoniae SP14-BS69] gi|183578395|gb|EDT98923.1| DNA polymerase III subunit delta [Streptococcus pneumoniae MLV-016] gi|225720685|gb|ACO16539.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 70585] gi|225727512|gb|ACO23363.1| DNA polymerase III subunit delta [Streptococcus pneumoniae Taiwan19F-14] gi|298238647|gb|ADI69778.1| possible DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|306409129|gb|ADM84556.1| ATPase involved in DNA replication [Streptococcus pneumoniae AP200] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|327389216|gb|EGE87561.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae GA04375] gi|332076214|gb|EGI86680.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae GA41301] Length = 233 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|224418165|ref|ZP_03656171.1| DNA polymerase III subunit delta' [Helicobacter canadensis MIT 98-5491] Length = 219 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S A+TGY V++ + N A NALLK LEEPP +V FIL + +L TIRSR Sbjct: 55 SYIASTGYKFVLI--AANSFNVYAQNALLKILEEPPSQVCFILFARMKSQLLPTIRSRMP 112 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA--YGSVARAIKI----LHYDCDK 234 I N L + L ++ + F+K + +G+ +KI L+ DC K Sbjct: 113 II--NQLKKEKLSPFSLSIRTLALKDIYPFLKEKSKEFGTNPTQLKIEIQSLYLDCIK 168 >gi|149019524|ref|ZP_01834843.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP23-BS72] gi|225856598|ref|YP_002738109.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae P1031] gi|307127512|ref|YP_003879543.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 670-6B] gi|147930899|gb|EDK81879.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP23-BS72] gi|225726264|gb|ACO22116.1| DNA polymerase III subunit delta [Streptococcus pneumoniae P1031] gi|306484574|gb|ADM91443.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 670-6B] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|309808253|ref|ZP_07702162.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|312872153|ref|ZP_07732226.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] gi|308168541|gb|EFO70650.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|311092237|gb|EFQ50608.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] Length = 285 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L Y ++ HA LF G L Y L N P CN C Sbjct: 13 KILFDAYLHDKIAHAYLFIDPTGY--TALATAYWLICLLNCTGEHKPDANCNN--C---- 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 Q + H ++L + N K+ +++D+IR ++ L+ G R ++ Sbjct: 65 -QRILNGNHPDVFLVEAENKKS------LSIDQIRPLKEELAKKPVEGSRRFFIVKDASL 117 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 118 LTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 162 >gi|154346764|ref|XP_001569319.1| replication factor C, subunit 5 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066661|emb|CAM44460.1| putative replication factor C, subunit 5 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 351 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 19/175 (10%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LLF G G GK T H + P S VR+ + Q++ + D LS Sbjct: 37 LLFYGPSGSGKKTRAMAML-HEIYGP--SVYSVRLEHKS------VQVSDSKVVDIATLS 87 Query: 97 ----YSLNPK-TGKWRTVITVDEIRRIRYFLSL--TANTGY---WRVIMIDPVDGMNRNA 146 +NP G + I + IR I + L T N+G ++V++++ VD M+R+A Sbjct: 88 SPHHIDINPSDAGYYDRSIVMQMIREIAQTVPLHTTVNSGKSVPYKVVVLNEVDKMSRSA 147 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +AL +++E+ L+ +++ ++S +RSRCL I+ S+ NL A++++ Sbjct: 148 QHALRRTMEKYMSTCRLFLLCNSTSRLISPLRSRCLGIRVALHSKENLKLAVQRV 202 >gi|307708577|ref|ZP_07645041.1| DNA polymerase III, delta' subunit [Streptococcus mitis NCTC 12261] gi|307615326|gb|EFN94535.1| DNA polymerase III, delta' subunit [Streptococcus mitis NCTC 12261] Length = 222 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTR 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 IL TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKILPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|194397015|ref|YP_002037573.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae G54] gi|194356682|gb|ACF55130.1| DNA polymerase III, delta' subunit [Streptococcus pneumoniae G54] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|312864207|ref|ZP_07724441.1| DNA polymerase III, delta' subunit [Streptococcus vestibularis F0396] gi|311100208|gb|EFQ58417.1| DNA polymerase III, delta' subunit [Streptococcus vestibularis F0396] Length = 291 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR++ S ++ G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 83 IIKTDTIRQLTREFSQSSFEGQAQVFIIRDADKMHVNAANSLLKFIEEPQSQIYIFLLTA 142 Query: 169 ASPTILSTIRSR 180 +L TI+SR Sbjct: 143 DDSRMLPTIKSR 154 >gi|322517268|ref|ZP_08070147.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus vestibularis ATCC 49124] gi|322124174|gb|EFX95708.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus vestibularis ATCC 49124] Length = 291 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I D IR++ S ++ G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 83 IIKTDTIRQLTREFSQSSFEGQAQVFIIRDADKMHVNAANSLLKFIEEPQSQIYIFLLTA 142 Query: 169 ASPTILSTIRSR 180 +L TI+SR Sbjct: 143 DDSRMLPTIKSR 154 >gi|148992932|ref|ZP_01822551.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP9-BS68] gi|168483005|ref|ZP_02707957.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC1873-00] gi|168490249|ref|ZP_02714448.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP195] gi|147928384|gb|EDK79400.1| DNA polymerase III subunit delta' [Streptococcus pneumoniae SP9-BS68] gi|172043468|gb|EDT51514.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC1873-00] gi|183571408|gb|EDT91936.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP195] Length = 296 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|167815352|ref|ZP_02447032.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei 91] Length = 196 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 25/171 (14%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 R H HALL G+ GIGK A G + + P + P C C+ F + +H Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHP 72 Query: 89 LHDFLY---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGY 130 + + L+ L PK K RT I ++++R + F + ++ G Sbjct: 73 DYRIVVPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGG 132 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 RV+++ P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 133 ARVVVLYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|306825447|ref|ZP_07458787.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432385|gb|EFM35361.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 296 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 IL TIRSR F E L LEQ Sbjct: 146 DEEKILPTIRSRTQIFHFKK-QEEKLIHQLEQ 176 >gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM 12286] gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286] Length = 322 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 40/221 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GHE I + L Y + H +LF G G GK T Sbjct: 25 VVGHETIVERLQSYVDRNDLSH-MLFAGPAGTGKTT------------------------ 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 + +++ + +L + + + G +D +R RI+ F + +R Sbjct: 60 --SATAIARELYGDDWQEH-FLELNASDERG-------IDVVRDRIKSFARTSFGGVDYR 109 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D D + +A +AL +++E+ V FI+ + S I+ I+SRC +F+ L + Sbjct: 110 IIFLDEADALTSDAQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDE 169 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + ++ I D D + AA G + +AI L Sbjct: 170 AVEAEIRHIADEEGIELTDDGVDALVYAAGGDMRKAINGLQ 210 >gi|168491023|ref|ZP_02715166.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC0288-04] gi|183574644|gb|EDT95172.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CDC0288-04] Length = 296 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ D M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|257462534|ref|ZP_05626945.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium sp. D12] gi|317060188|ref|ZP_07924673.1| ATPase and helicase [Fusobacterium sp. D12] gi|313685864|gb|EFS22699.1| ATPase and helicase [Fusobacterium sp. D12] Length = 290 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +++IR T+ G ++ ++ + + + +ANALLKS+EEP + F+L + Sbjct: 73 LNIEDIREAESSFHETSYEGERKIFILPNIQDLRKESANALLKSIEEPGENTFFLLWT-T 131 Query: 170 SPTILSTIRSRCLSI 184 ILSTIRSR + + Sbjct: 132 RKNILSTIRSRSIQV 146 >gi|227549651|ref|ZP_03979700.1| DNA polymerase III subunit gamma and tau [Corynebacterium lipophiloflavum DSM 44291] gi|227078275|gb|EEI16238.1| DNA polymerase III subunit gamma and tau [Corynebacterium lipophiloflavum DSM 44291] Length = 605 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +VD++R +R +RV +ID ++ NALLK +EEPP+ ++F+ + Sbjct: 10 SVDDMRELRERALFAPAEFRYRVFIIDEAHMISTQGNNALLKVVEEPPEHLIFVFATTEP 69 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSR + F L+ + + LE + Sbjct: 70 EKMLGTIRSRTHNYPFRLLTPQAMRQLLENV 100 >gi|315633632|ref|ZP_07888922.1| DNA polymerase III subunit delta [Aggregatibacter segnis ATCC 33393] gi|315477674|gb|EFU68416.1| DNA polymerase III subunit delta [Aggregatibacter segnis ATCC 33393] Length = 327 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 34 HHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 HHALL + G+G L A ++ P+ ++A C+ + + Q SH DF Sbjct: 25 HHALLIRADDGLGVEQLCSALAKRLMCLTPNGAEA-CGECH----ACHLMQANSHP--DF 77 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 +S N G VD+IR + + A +V+ I+ + AANA+LK Sbjct: 78 QPISPIDNKDIG-------VDQIRAMNEQATQHAQQNGNKVVYIEQAHRLTEAAANAILK 130 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRC 181 +LEEP FIL +L TI SRC Sbjct: 131 TLEEPRPNTYFILQCDMQKALLPTIYSRC 159 >gi|187933040|ref|YP_001884436.1| DNA polymerase III subunit delta' [Clostridium botulinum B str. Eklund 17B] gi|187721193|gb|ACD22414.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 30/189 (15%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + GHE + S HA L G+ GIGK+ + A +L K V + Sbjct: 2 REIIGHERVINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSIL-GLKGDKEFVDI 60 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N P S + VD+IR I +S Sbjct: 61 INYYPLS-----------------------------SSFGVDDIRNIITEVSKKPFESDK 91 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ + M A NALLK++EEPP V IL+S + IL TI+SRC + K LS+ Sbjct: 92 KVLILHKCEKMTIQAQNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSK 151 Query: 192 NNLYKALEQ 200 ++ K +E Sbjct: 152 EDITKYIEN 160 >gi|167957235|ref|ZP_02544309.1| putative DNA polymerase III, gamma/tau subunits [candidate division TM7 single-cell isolate TM7c] Length = 489 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 31/183 (16%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-DFSKAPVRM 71 + G + + L + S ++ HA L G +G GK ++ A + P D + + Sbjct: 16 EIVGQDHVTSLLDRALESNKVAHAYLLTGPRGTGKTSVARILAHKITGLPYDIEDNNLDI 75 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D S G VD +R +R + Sbjct: 76 IEIDAAS-----------------------NNG-------VDNVRDLREKALVAPIKSQK 105 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V +ID V ++++A NALLK +EEPP+ V+FIL + + TI SR F + E Sbjct: 106 KVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQRYNFRLIDE 165 Query: 192 NNL 194 + + Sbjct: 166 STV 168 >gi|307704912|ref|ZP_07641803.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK597] gi|307621526|gb|EFO00572.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK597] Length = 296 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 IL TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKILPTIRSRTQIFHFKK-QEEQLILLLEQMGLV 180 >gi|300122545|emb|CBK23114.2| unnamed protein product [Blastocystis hominis] gi|300122911|emb|CBK23918.2| unnamed protein product [Blastocystis hominis] Length = 354 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+D+ L + S H +LF G G GK T R + + +RM + Sbjct: 18 HKDMSINLMKLASSNEFPH-MLFYGPSGCGKKT---RIMALLREMFGSGVEKLRMEKREF 73 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVI 134 +P K + + ++ LNP G + V+ + I+ I + L AN + ++V+ Sbjct: 74 KTPSQKSIEIVTIASNYHIE--LNPSDVGIYDYVVVQEIIKEIAQYKQLDANAKHPFKVV 131 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN--SLSE 191 ++ D ++RNA L +++E+ IL S I++ IRSRCL ++ + +LSE Sbjct: 132 LLSEADNLSRNAQAGLRRTMEKYSSNCRLILCCENSSRIIAPIRSRCLCLRISAPTLSE 190 >gi|32490844|ref|NP_871098.1| hypothetical protein WGLp095 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166050|dbj|BAC24241.1| holB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 329 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 17/158 (10%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMCNPDPCSPFVK 82 YY +L + G G L +L N S + CN F+K Sbjct: 15 SYYIRSNTSSVILIQSNTGCGIKNLYLYIVKRILCLKPNNFISCNNCKSCN------FIK 68 Query: 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM 142 + + + L +Y + I +D++R I L L ++ +VI+I+ ++ + Sbjct: 69 ENSHPDFFNILTKNYL--------KNTIGIDDVRFICKNLLLNSHLNKGKVILIENLEKL 120 Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 A++ALLK+LEEP K FIL IL +I SR Sbjct: 121 TNQASHALLKTLEEPTIKTYFILGCKNIYCILPSIISR 158 >gi|167845305|ref|ZP_02470813.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei B7210] Length = 228 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|167719163|ref|ZP_02402399.1| DNA polymerase III subunit delta' [Burkholderia pseudomallei DM98] Length = 193 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 35 HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 HALL G+ GIGK A G + + P + P C C+ F + +H + + Sbjct: 22 HALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAA--CTWF--EQGNHPDYRIV 77 Query: 94 Y---LSYSL-----NPKTG-------KWRTV---ITVDEIRRIRYFLSLTANTGYWRVIM 135 L+ L PK K RT I ++++R + F + ++ G RV++ Sbjct: 78 VPEALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVV 137 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + P + +N AANALLK+LEEPP V+F+L S +L TI SRC Sbjct: 138 LYPAEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRC 183 >gi|209517024|ref|ZP_03265872.1| DNA polymerase III, delta prime subunit [Burkholderia sp. H160] gi|209502555|gb|EEA02563.1| DNA polymerase III, delta prime subunit [Burkholderia sp. H160] Length = 350 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 37/181 (20%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK----QMAS 86 G HALL G+ GIGK R+A H+ Q +AP N +PC V + Sbjct: 18 GHWPHALLLHGQAGIGK----LRFAQHLAQG-LLCEAP--QPNGEPCGACVACNWFTQGN 70 Query: 87 HALHDFLYLSYSL--------------------------NPKTGKWRTVITVDEIRRIRY 120 H + + KT I ++++R + Sbjct: 71 HPDYRIVVPEALAAELAPASAANGADDKAEKTDKADGDEGKKTRTPSKEIKIEQVRGLLD 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F+ + ++ G RV+++ P + +N AANALLK+LEEPP V+F+++S +L TI SR Sbjct: 131 FVGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISR 190 Query: 181 C 181 C Sbjct: 191 C 191 >gi|7262689|gb|AAF43947.1|AC012188_24 Contains similarity to DNA Pol III Gamma and Tau from Chlamydia trachomatis gb|AE001306.1 and contains an AAA (ATPase) PF|00004 domain [Arabidopsis thaliana] Length = 1071 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 32/210 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ H LF+G +G GK + R L N Sbjct: 424 LSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTA-RILSAAL-N 481 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR---- 117 D ++ C + K+ + + L GK R ++ +D ++ Sbjct: 482 CDVVTEEMKPCG------YCKECSDYML--------------GKSRDLLELDAGKKNGAE 521 Query: 118 -IRYFLS--LT---ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +RY L LT ++ ++V +ID + +LLK LE P QK +F+ I+ Sbjct: 522 KVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLD 581 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI+SRC FN + + ++ L ++ Sbjct: 582 NVPRTIQSRCQKYIFNKVRDGDIVVRLRKI 611 >gi|19745550|ref|NP_606686.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS8232] gi|19747671|gb|AAL97185.1| putative DNA polymerase III delta subunit [Streptococcus pyogenes MGAS8232] Length = 291 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T G +V +I + M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYEGKRQVFIIKDCEKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGEAYMFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|325973697|ref|YP_004250761.1| DNA polymerase III subunits gamma and tau [Mycoplasma suis str. Illinois] gi|323652299|gb|ADX98381.1| DNA polymerase III, subunits gamma and tau [Mycoplasma suis str. Illinois] Length = 391 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 27/208 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ + P + + L G E +K L H+ LF G G GK T R + Sbjct: 1 MLYNKYRPQFFRELVGQEFSKKLLINILKQKADVHSFLFYGPNGTGKTT-SARLFSRAIN 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +F + + C K D + + + N + + IR Sbjct: 60 CENFLEGEDICGKCEAC----KISREEGCTDIIEIDGATN------------NGVEFIRE 103 Query: 121 FLSLTANTGYW-------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 F+ N + ++ +ID ++ A N+LLK +EEPP ++ I ++ I Sbjct: 104 FI---KNNAIYPPLLLKKKIYLIDEAHCLSIQAWNSLLKIIEEPPSHLILIFLTTEIHKI 160 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRC + F+ L EN L LE++ Sbjct: 161 IPTILSRCQKLLFSPLEENTLISFLEKI 188 >gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710] gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710] Length = 329 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 48/233 (20%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + D + NQ E+I L ++ M H LLF G G GK T A H L Sbjct: 20 KTLDEIVNQ-----EEIVSRLKRFVQERNMPH-LLFAGPPGTGKTT-----AAHCL---- 64 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYF- 121 +H L Y Y L R + D IR +++ F Sbjct: 65 ----------------------AHDLFGENYRQYMLELNASDERGI---DVIRSKVKEFA 99 Query: 122 -LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +TAN + +++++D D M +A AL + +E FILI++ I+ I+SR Sbjct: 100 RTRVTANIPF-KIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSR 158 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 C +F L + ++ L+ Q K+ + + + + G + RAI IL Sbjct: 159 CAVFRFAPLKKEDVISRLKWIANQEKVEVDEEALEAIHDLSEGDMRRAINILQ 211 >gi|325990141|ref|YP_004249840.1| DNA polymerase III subunits gamma and tau [Mycoplasma suis KI3806] gi|323575226|emb|CBZ40891.1| DNA polymerase III, subunits gamma and tau [Mycoplasma suis] Length = 649 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 27/208 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ + P + + L G E +K L H+ LF G G GK T R + Sbjct: 1 MLYNKYRPQFFRELVGQEFSKKLLINILKQKADVHSFLFYGPNGTGKTT-SARLFSRAIN 59 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +F + + C K D + + + N + + IR Sbjct: 60 CENFLEGEDICGKCEAC----KISREEGCTDIIEIDGATN------------NGVEFIRE 103 Query: 121 FLSLTANTGYW-------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 F+ N + ++ +ID ++ A N+LLK +EEPP ++ I ++ I Sbjct: 104 FI---KNNAIYPPLLLKKKIYLIDEAHCLSIQAWNSLLKIIEEPPSHLILIFLTTEIHKI 160 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI SRC + F+ L EN L LE++ Sbjct: 161 IPTILSRCQKLLFSPLEENTLISFLEKI 188 >gi|327198331|ref|YP_004306905.1| DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit [Streptococcus phage Dp-1] gi|314912633|gb|ADT64024.1| DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit [Streptococcus phage Dp-1] Length = 341 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V +ID V ++ A NALLK+LEEP +FIL + I TI SR F + Sbjct: 96 FKVYIIDEVHMLSTGAFNALLKTLEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRID 155 Query: 191 ENNLYKAL------EQLKIMGWDSKRD---FVKIAAYG----SVARAIKILHYDCDKIIS 237 +++ L E + G+ +RD F+ A G S+ R K+L Y + Sbjct: 156 NDDIVNQLQFIIESENEEGAGYSYERDALSFIGKLANGGMRDSITRLEKVLDYSHHVDME 215 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF 273 + + + +P E ++ IA+ S+ +I DF Sbjct: 216 AVSNALGVPDYETFASLVEAIANYDGSKCLEIVNDF 251 >gi|115455849|ref|NP_001051525.1| Os03g0792600 [Oryza sativa Japonica Group] gi|28269436|gb|AAO37979.1| putative replication factor [Oryza sativa Japonica Group] gi|108711507|gb|ABF99302.1| Activator 1 38 kDa subunit, putative, expressed [Oryza sativa Japonica Group] gi|113549996|dbj|BAF13439.1| Os03g0792600 [Oryza sativa Japonica Group] gi|125546006|gb|EAY92145.1| hypothetical protein OsI_13856 [Oryza sativa Indica Group] gi|215737314|dbj|BAG96243.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765336|dbj|BAG87033.1| unnamed protein product [Oryza sativa Japonica Group] gi|222625948|gb|EEE60080.1| hypothetical protein OsJ_12910 [Oryza sativa Japonica Group] Length = 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDP 76 ++++K +++ C LLF G G GK TL + D K + D Sbjct: 23 QNLKKLVAEQDCPH-----LLFYGPSGSGKKTLVMALIKQMFGAGADKVKMENKTWKIDT 77 Query: 77 CSPFVK---QMASHALHDFLYLSYSLNPKTGKWRTVITVDE-IRRIRYFLSLTANTGY-W 131 S ++ M S A H +NP ++ V E I+ + + A + Sbjct: 78 GSRNIEIELAMLSSAHH------VEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGKRAF 131 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+++ N+ SE Sbjct: 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPSE 191 Query: 192 NNLYKALE 199 + + + LE Sbjct: 192 DQIVQVLE 199 >gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa] Length = 353 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 44/75 (58%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++V++++ VD ++R A ++L +++E+ IL ++S + IRSRCL++ Sbjct: 125 TKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNV 184 Query: 185 KFNSLSENNLYKALE 199 + N+ E + K LE Sbjct: 185 RINAPKEEQIVKVLE 199 >gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1] gi|158513390|sp|A3DNV9|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1] Length = 329 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 43/231 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + E+I L Q+ M H LLF G G GK T A H L Sbjct: 17 YRPKTLDEIVDQEEIVSRLKQFVKERNMPH-LLFAGPPGTGKTT-----AAHCL------ 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYF--L 122 +H L Y Y L R + D IR +++ F Sbjct: 65 --------------------AHDLFGENYRQYMLELNASDERGI---DVIRSKVKEFART 101 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + AN + +++++D D M +A AL + +E FILI++ I+ I+SRC Sbjct: 102 RVAANIPF-KIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCA 160 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F L + ++ L EQ K+ + + + + G + RAI IL Sbjct: 161 VFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQ 211 >gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio] gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio] Length = 334 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 56/296 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + A + ++ +F+ Sbjct: 28 LISHQDILSTIQKFISEDRLPH-LLFYGPPGTGKTSTILACARQLYKDKEFNS------- 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 80 ---------------------MVLELNASDDRG-----IDVVRGPILSFASTRTIFKKGF 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS+ Sbjct: 114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQ 173 Query: 192 NNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKIL---HYDCDKII--SSYIDL 242 N + LE ++ D D +K + G + R++ IL H K+ + Y Sbjct: 174 NQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCT 233 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 H R + A I D L++D A++ ++E K+ K AL L E Sbjct: 234 GHPLRSDIA-----NILDWALNKDFTTAYNQILEL------KTLKGLALHDILTEV 278 >gi|42518524|ref|NP_964454.1| hypothetical protein LJ0429 [Lactobacillus johnsonii NCC 533] gi|41582809|gb|AAS08420.1| hypothetical protein LJ_0429 [Lactobacillus johnsonii NCC 533] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGNRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKFN 187 LI++ IL T++SR + F+ Sbjct: 141 LITNNENQILPTVKSRTQILNFS 163 >gi|268610327|ref|ZP_06144054.1| DNA polymerase III, delta prime subunit [Ruminococcus flavefaciens FD-1] Length = 326 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 13/188 (6%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + ++G+E + ++ + + +++F GE+G GK + Y ++ P Sbjct: 2 KNIYGNEYLLSTIANMIKNDKAAQSVIFCGEKGSGKRLMAKYYTMSLMCESPVDGRPCGK 61 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 CN C M H D +Y P +GK +V+ R + + N Sbjct: 62 CNA--CHNV--DMGYHP--DVIYA-----PTSGKLGGY-SVETARAVINQAYIKPNNSSG 109 Query: 132 RVIMI-DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 R + I + N LLK +EEPP+ FI ++ L TI SRC+ ++++ Sbjct: 110 RKVCIFTDCKNTDPRTQNVLLKLIEEPPEYAYFIFTCNSRTDFLPTIISRCVCFGVSTVT 169 Query: 191 ENNLYKAL 198 + KAL Sbjct: 170 DEEAKKAL 177 >gi|116629045|ref|YP_814217.1| DNA replication ATPase [Lactobacillus gasseri ATCC 33323] gi|311111159|ref|ZP_07712556.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22] gi|116094627|gb|ABJ59779.1| DNA replication ATPase [Lactobacillus gasseri ATCC 33323] gi|311066313|gb|EFQ46653.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ ILI Sbjct: 83 KQTLSIDQIRPLKEELAKSPVEGKRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTILI 142 Query: 167 SHASPTILSTIRSRCLSIKFN 187 ++ IL T++SR + F+ Sbjct: 143 TNNENQILPTVKSRTQILNFS 163 >gi|288575013|ref|ZP_06393370.1| DNA polymerase III gamma/tau subunits-like protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570754|gb|EFC92311.1| DNA polymerase III gamma/tau subunits-like protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 254 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV-LFILISHA 169 +VD+ RR+ LSL R+ ++ D M+ N+AN+LLK EEPP+ LF L+ Sbjct: 85 SVDQCRRMSEELSLRPVVASRRIAVVPDADRMSLNSANSLLKITEEPPESGHLFFLLRED 144 Query: 170 SPTILSTIRSRCLSIKFNS 188 ++ T+RSR +++F+S Sbjct: 145 --RMIPTLRSRVWTLRFSS 161 >gi|75758637|ref|ZP_00738755.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493896|gb|EAO56994.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 431 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 31/192 (16%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-Q 60 I R + P G+ED++K + + + A+L +G G GK ++ A L + Sbjct: 14 ITRRYRPKSMDEYKGNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYLCE 73 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + D K C + + D++ +TG ++ + EI + Sbjct: 74 DRDEEKGACGEC-----------YSCKMMDDYI--------ETGNTDGLMGLREINASKD 114 Query: 121 FLSLTANT-----------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 N+ G W++ ++D ++ A N+LLK +EEPP+ VLF+ + Sbjct: 115 SGLTAINSLLEEAQYPNPDGSWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTTD 174 Query: 170 SPTILSTIRSRC 181 +L T+ +RC Sbjct: 175 PDKMLDTLLNRC 186 >gi|327182910|gb|AEA31357.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1118] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD +Q+ S D L + + + + +D++R ++ L+ + R Sbjct: 57 PDGTCQNCRQILSGNHPDVLLVG-------PEGKQTLGIDQVRPLKEELAKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 I+ + +AAN LL LEEP V+ ILI++ S IL TIRSR I F++ Sbjct: 110 FFINEAQKLTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTIRSRTQIINFDN 164 >gi|300362305|ref|ZP_07058481.1| DNA polymerase III [Lactobacillus gasseri JV-V03] gi|300353296|gb|EFJ69168.1| DNA polymerase III [Lactobacillus gasseri JV-V03] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGKRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKFN 187 LI++ IL T++SR + F+ Sbjct: 141 LITNNENQILPTVKSRTQILNFS 163 >gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio] gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio] gi|220673394|emb|CAX13672.1| replication factor C (activator 1) 5 [Danio rerio] Length = 334 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 56/296 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + A + ++ +F+ Sbjct: 28 LISHQDILSTIQKFISEDRLPH-LLFYGPPGTGKTSTILACARQLYKDKEFNS------- 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 80 ---------------------MVLELNASDDRG-----IDVVRGPILSFASTRTIFKKGF 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS+ Sbjct: 114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQ 173 Query: 192 NNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKIL---HYDCDKII--SSYIDL 242 N + LE ++ D D +K + G + R++ IL H K+ + Y Sbjct: 174 NQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCT 233 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 H R + A I D L++D A++ ++E K+ K AL L E Sbjct: 234 GHPLRSDIA-----NILDWALNKDFTTAYNQILEL------KTLKGLALHDILTEV 278 >gi|313124282|ref|YP_004034541.1| DNA replication ATPase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280845|gb|ADQ61564.1| DNA replication ATPase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685696|gb|EGD27775.1| DNA polymerase III [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 290 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD P +++ + D + N ++ I +D+IR ++ L+ + G R Sbjct: 57 PDGTCPACRRILACNHPDVFLIDTEENKQS------IAIDQIRPLKQELAKSPLEGDRRY 110 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I+ + AANA+L LEEP V+ LI++ IL TI+SR I F+ + + Sbjct: 111 FVINHAQKLTLPAANAMLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFSQQAAS- 169 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK-----ILHYDCDKIISSY--IDLIHIP 246 + ++L + S+ + ++ + V +A+K + +D I+S++ DL+ Sbjct: 170 ---SKDRLLLANGMSQEEVDQVKSSQEVDQAVKYFYQELREHDSLAIVSAHQLADLVKKQ 226 Query: 247 RQ 248 +Q Sbjct: 227 KQ 228 >gi|281414720|ref|ZP_06246462.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] Length = 774 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 19/201 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P + + G + + L R++HA LF G +G GK T R L Q Sbjct: 7 RRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGK-TTSARILARCLNCAQ 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C D C + +A+ L G V++ R +R Sbjct: 66 GP--TPTPCGEC--DSC----RDLATGGPGSLDVLEIDAASHGG-------VEDARGLRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++++ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 111 RATFAPVRDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL 201 F + L LEQL Sbjct: 171 THHYPFRLVPPEPLIAYLEQL 191 >gi|15639511|ref|NP_218961.1| DNA polymerase III, gamma and tau subunits, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189025750|ref|YP_001933522.1| DNA polymerase III, gamma and tau subunits [Treponema pallidum subsp. pallidum SS14] gi|3322812|gb|AAC65508.1| DNA polymerase III, gamma and tau subunits, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189018325|gb|ACD70943.1| possible DNA polymerase III, gamma and tau subunits [Treponema pallidum subsp. pallidum SS14] gi|291059897|gb|ADD72632.1| DNA polymerase III domain-containing protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 423 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T + V +IR ++ LT + G +V++I+ M+ +A A LK LEEPP+ LFIL + Sbjct: 178 TQLPVQQIRNAIQWVRLTPS-GRKKVLIIEHAHAMHESARTAFLKILEEPPRDTLFILTT 236 Query: 168 HASPTILSTIRSRCLSIKFNSLS 190 I+ T+ SR S F S Sbjct: 237 ATKYAIMPTVLSRVRSYSFRERS 259 >gi|30683811|ref|NP_172898.2| DNA polymerase-related [Arabidopsis thaliana] gi|332191046|gb|AEE29167.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 1116 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 32/210 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P++ L G + + L GR+ H LF+G +G GK + R L N Sbjct: 424 LSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTA-RILSAAL-N 481 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR---- 117 D ++ C + K+ + + L GK R ++ +D ++ Sbjct: 482 CDVVTEEMKPCG------YCKECSDYML--------------GKSRDLLELDAGKKNGAE 521 Query: 118 -IRYFLS--LT---ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +RY L LT ++ ++V +ID + +LLK LE P QK +F+ I+ Sbjct: 522 KVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLD 581 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + TI+SRC FN + + ++ L ++ Sbjct: 582 NVPRTIQSRCQKYIFNKVRDGDIVVRLRKI 611 >gi|227888763|ref|ZP_04006568.1| DNA-directed DNA polymerase III delta' subunit [Lactobacillus johnsonii ATCC 33200] gi|227850600|gb|EEJ60686.1| DNA-directed DNA polymerase III delta' subunit [Lactobacillus johnsonii ATCC 33200] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGNRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKF 186 LI++ IL T++SR + F Sbjct: 141 LITNNENQILPTVKSRTQILNF 162 >gi|212721694|ref|NP_001131961.1| hypothetical protein LOC100193357 [Zea mays] gi|194693044|gb|ACF80606.1| unknown [Zea mays] Length = 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 45/69 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+++ N+ S Sbjct: 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPS 190 Query: 191 ENNLYKALE 199 E+ + + LE Sbjct: 191 EDQIVQVLE 199 >gi|329666795|gb|AEB92743.1| hypothetical protein LJP_0409 [Lactobacillus johnsonii DPC 6026] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGNRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKFN 187 LI++ IL T++SR + F+ Sbjct: 141 LITNNENQILPTVKSRTQILNFS 163 >gi|325478746|gb|EGC81857.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 263 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 39/200 (19%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 L++ + ++ A +FEG+ +A +V + + A NPD Sbjct: 4 LNEQLKNNKLASAYIFEGKNPSSNKEFALDFAKNVFTS--YKVASDIENNPD-------- 53 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 LY+ K VI + IR I + L + G ++ +I M Sbjct: 54 ---------LYV-------LDKEGDVIDIQSIRNILKDIYLRPDNGKIKIYIIHNAQDMR 97 Query: 144 RNAANALLKSLEE--PPQKVLFILISHASPTILSTIRSRC--LSIKFN----SLSENNLY 195 ANA+LKSLEE P K++F ++ S I+ TIRSRC +SIK + S+ ++ LY Sbjct: 98 DVGANAMLKSLEELKPYVKIIFTCVNRDS--IIPTIRSRCQIISIKTSDIDLSVDKDKLY 155 Query: 196 KALEQL---KIMGWDSKRDF 212 + + + KI + ++DF Sbjct: 156 RIIADVYSGKIEAYYKEKDF 175 >gi|325956095|ref|YP_004286705.1| DNA polymerase III subunit delta [Lactobacillus acidophilus 30SC] gi|325332660|gb|ADZ06568.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus 30SC] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD +Q+ S D L + + + + +D++R ++ L+ + R Sbjct: 57 PDGTCQNCRQILSGNHPDVLLVG-------PEGKQTLGIDQVRPLKEELAKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 I+ + +AAN LL LEEP V+ ILI++ S IL TIRSR I F++ Sbjct: 110 FFINEAQKLTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTIRSRTQIINFDN 164 >gi|284028399|ref|YP_003378330.1| DNA polymerase III subunits gamma and tau [Kribbella flavida DSM 17836] gi|283807692|gb|ADB29531.1| DNA polymerase III, subunits gamma and tau [Kribbella flavida DSM 17836] Length = 1113 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 31/186 (16%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-------G 56 R + P + G + + L + R++HA LF G +G GK T A G Sbjct: 19 RRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAYLFSGPRGCGKTTSARILARAINCEKG 78 Query: 57 HVLQNPDFSKAPVRMCNPDPCSPFVKQM--ASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + Q K+ + P S V ++ ASH VD+ Sbjct: 79 PIAQPCGVCKSCTDLARGGPGSIDVIEIDAASHG----------------------GVDD 116 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 R +R +++ +ID + NALLK +EEPP + FI + ++ Sbjct: 117 ARDLRERAFFAPVESRYKIYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVI 176 Query: 175 STIRSR 180 TIRSR Sbjct: 177 GTIRSR 182 >gi|268318945|ref|YP_003292601.1| DNA polymerase III delta' subunit [Lactobacillus johnsonii FI9785] gi|262397320|emb|CAX66334.1| DNA polymerase III delta' subunit [Lactobacillus johnsonii FI9785] Length = 285 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGNRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKF 186 LI++ IL T++SR + F Sbjct: 141 LITNNENQILPTVKSRTQILNF 162 >gi|256545291|ref|ZP_05472655.1| DNA polymerase III, delta prime subunit [Anaerococcus vaginalis ATCC 51170] gi|256398972|gb|EEU12585.1| DNA polymerase III, delta prime subunit [Anaerococcus vaginalis ATCC 51170] Length = 276 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 48/83 (57%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++ IR + + L + G ++ +I + ++ ++NALLKS+EE ++ I ++ Sbjct: 67 ISIKTIRILIKDMYLRPSNGKIKIYIIKDSENLSIESSNALLKSIEEAKDYIILIFTTNN 126 Query: 170 SPTILSTIRSRCLSIKFNSLSEN 192 + ++L TIRSRC I F S EN Sbjct: 127 AYSLLKTIRSRCQIISFKSQIEN 149 >gi|269122239|ref|YP_003310416.1| DNA polymerase III gamma/tau subunits [Sebaldella termitidis ATCC 33386] gi|268616117|gb|ACZ10485.1| DNA polymerase III gamma/tau subunits-like protein [Sebaldella termitidis ATCC 33386] Length = 382 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +D++R I + +V +++ V+ + + +ANALLK +EEPP+ + FIL+S Sbjct: 87 VKIDDVREIILNAIESPYKAKKKVYILNGVEKLRKESANALLKIIEEPPKNLYFILLSK- 145 Query: 170 SPTILSTIRSRCLS 183 S I+ TI+SR ++ Sbjct: 146 SLNIIPTIKSRVMT 159 >gi|195621066|gb|ACG32363.1| replication factor C subunit 5 [Zea mays] Length = 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 45/69 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+++ N+ S Sbjct: 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPS 190 Query: 191 ENNLYKALE 199 E+ + + LE Sbjct: 191 EDQIVQVLE 199 >gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Candidatus Methanoregula boonei 6A8] gi|166225154|sp|A7I8Y0|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8] Length = 322 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 37/187 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G +DI + LS Y SG + H LLF G G+GK T A Sbjct: 12 YRPAKLADIVGQDDIVERLSSYVKSGNLPH-LLFTGSAGVGKTTAAVTLA---------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-S 123 +F S+ +N + +D +R +I+ F + Sbjct: 61 ------------------------REFFGDSWQMNFRELNASDERGIDVVRNQIKEFART 96 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 A ++++ +D D + +A AL +++E + FIL + S I+ I+SRC Sbjct: 97 RPAGDAAFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAI 156 Query: 184 IKFNSLS 190 +F L Sbjct: 157 YRFRPLG 163 >gi|258510142|ref|YP_003183576.1| DNA polymerase III gamma/tau subunits-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476868|gb|ACV57187.1| DNA polymerase III gamma/tau subunits-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 312 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 20/171 (11%) Query: 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRY-AGHVLQNPDFSKAPV 69 N RL G + + L + +G + HA+L GE +A R+ A +L + AP Sbjct: 7 NGRLDGAVGLPEVLVRRLRAGELWHAVLLVGESS--QAERAARWLAQALLCEAPRADAPC 64 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C C+ F S H + S K G ++ ++ +L+ T G Sbjct: 65 GRCRS--CAQF-----SAGSHPDFWASGEEGLKAG---------DVEALQAWLA-TKGHG 107 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +V ++ D M AAN +LK+LEEP + IL + + +LST+RSR Sbjct: 108 TRKVYVLYGADEMTPVAANRMLKTLEEPAPETYAILTAKSRQKVLSTLRSR 158 >gi|225871113|ref|YP_002747060.1| DNA polymerase III, delta' subunit [Streptococcus equi subsp. equi 4047] gi|225700517|emb|CAW94976.1| putative DNA polymerase III, delta' subunit [Streptococcus equi subsp. equi 4047] Length = 291 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + AP C C Q+ H +D Sbjct: 22 RLNHAYLFSGD--FANFDMALFLAKTLFCEQKRGNAPCHHCRA--C-----QLIEH--ND 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P G+ +I D ++ + S T G +V +I D M+ NAAN++L Sbjct: 71 FSDVTI-LEP-VGQ---LIKTDTVKEMMTNFSQTGYEGRRQVFIIKDCDKMHVNAANSIL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP L+++ +L TI+SR F Sbjct: 126 KYIEEPQGDCYMFLLTNDDNQVLPTIKSRTQVFHF 160 >gi|304360727|ref|YP_003856858.1| putative DNA polymerase III [Clostridium phage phiCTP1] gi|302495586|gb|ADL40366.1| putative DNA polymerase III [Clostridium phage phiCTP1] Length = 364 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 36/188 (19%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G E+++K L + A LF G G GK TL +L N Sbjct: 14 EDVVGQENVKKILENQVATKEFKQAYLFIGSAGTGKTTLA-----RILANA--------- 59 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 N + P AS+ V+ +R+I A + Sbjct: 60 INANKGKPIEVDGASNN----------------------GVENVRKIIDDCKFKALDSKY 97 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +ID + A NA+LK +EEPP +F+ + I TI SR S Sbjct: 98 KIYIIDECHMLTVGAWNAMLKVIEEPPANTIFMFCTTNPEKIPDTILSRVQRFDIEKHST 157 Query: 192 NNLYKALE 199 N+ LE Sbjct: 158 ENIVNRLE 165 >gi|325283826|ref|YP_004256367.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit) [Deinococcus proteolyticus MRP] gi|324315635|gb|ADY26750.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit) [Deinococcus proteolyticus MRP] Length = 319 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%) Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKW--RTVITVDEIRRIR---------YFLSLTAN 127 P + +A+ A D L LS TG+ R +I + + + R F L Sbjct: 62 PSCRALAAGAHPDLLELSPRETTSTGRTARRKIIPIGAVLQSRDKGRDYDTHVFEFLEVR 121 Query: 128 TGYWR-VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 Y R ++I + + AANALLK +EEPP LF+L++ ++ T+ SR + Sbjct: 122 PTYRRRAVLIHGAEYLGAEAANALLKLMEEPPHGALFVLLAGDVRAVMPTLVSRSTRLSV 181 Query: 187 NSLSENNLYKALEQLKIMGWDSKRD 211 L + +++ L + ++ G S D Sbjct: 182 PPLDDPTMHEELAR-QVAGESSTLD 205 >gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] Length = 944 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHAL 89 R++HA LF G +G GK T R L + ++ P PC + +A Sbjct: 40 RINHAYLFSGPRGCGK-TSSARIMARSL---NCAEGPTAT----PCGQCASCRALAPGGP 91 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + + G V+++R +R +R+ +ID + + NA Sbjct: 92 GNLDVIELDAASHNG-------VEDMRELREKAIFQPAESRYRIFIIDEAHMITASGFNA 144 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LLK +EEPP+ ++FI + +L TIRSR F L+ ++ LE++ Sbjct: 145 LLKIVEEPPEHLIFIFATTEPERVLPTIRSRTHHYPFRLLTPPDMRGLLERV 196 >gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii] Length = 331 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/296 (20%), Positives = 117/296 (39%), Gaps = 52/296 (17%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + L H DI + ++ R+ H LLF G G GK + A + +F+ Sbjct: 22 EELISHADILSTIDRFIKEDRLPH-LLFYGPPGTGKTSTILAVAKQLYSPKEFNSM---- 76 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 L L+ S + G R + + + + T + Sbjct: 77 --------------------VLELNASDDRGIGIVRGPV-------LSFASTRTIFKSGF 109 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M +A NAL + +E+ + F LI + I+ I+SRC +F L Sbjct: 110 KIVILDEADAMTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDN 169 Query: 192 NNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDCDKIISSYIDL 242 + LE Q ++ + + + A G + +++ IL YD ++ Y + Sbjct: 170 QQMVPRLEHVIQQERVDVTEDGMNALVTLANGDMRKSLNILQSTSMAYDVVNEVNVYTCV 229 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 H P +E + I + +L++D A++ +++ K+ K AL L E Sbjct: 230 GH-PLKE----DISNIVNWMLNEDFTTAYNNILDL------KTLKGLALQDILTEV 274 >gi|281339983|gb|EFB15567.1| hypothetical protein PANDA_008825 [Ailuropoda melanoleuca] Length = 244 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 3 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 62 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ LS+ L LEQ K+ D + V A G + +A Sbjct: 63 ASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQA 122 Query: 225 I 225 + Sbjct: 123 L 123 >gi|238853623|ref|ZP_04643992.1| DNA replication ATPase [Lactobacillus gasseri 202-4] gi|238833767|gb|EEQ26035.1| DNA replication ATPase [Lactobacillus gasseri 202-4] Length = 285 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%) Query: 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + + +++D+IR ++ L+ + G R +I+ + + A+NALL LEEP V+ I Sbjct: 81 EGKQTLSIDQIRPLKEELAKSPVEGKRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTI 140 Query: 165 LISHASPTILSTIRSRCLSIKFN 187 LI++ IL T++SR + F+ Sbjct: 141 LITNNENQILPTVKSRTQILNFS 163 >gi|225020217|ref|ZP_03709409.1| hypothetical protein CORMATOL_00219 [Corynebacterium matruchotii ATCC 33806] gi|224946961|gb|EEG28170.1| hypothetical protein CORMATOL_00219 [Corynebacterium matruchotii ATCC 33806] Length = 364 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 13/119 (10%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS------PTILSTIRSRCL 182 G WR++++D D + AAN LLK++EEPP + +L + ++ PT+LS RSR L Sbjct: 83 GKWRIVILDNADRLTDAAANTLLKTVEEPPAHTVIMLCAPSTDPEDIIPTLLS--RSRHL 140 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 I S+ +++ L + D++R +A+ + RA +LH+ +I + I Sbjct: 141 YIPQPSI--DDIVAILTRTDNATEADARR--AAMASGNHIGRARHLLHHQESQIRRTNI 195 >gi|315221917|ref|ZP_07863828.1| DNA polymerase III, delta' subunit [Streptococcus anginosus F0211] gi|315188883|gb|EFU22587.1| DNA polymerase III, delta' subunit [Streptococcus anginosus F0211] Length = 297 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYW---RVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 R V + + R+R + + +G+ +V +I D M+ NAAN+LLK +EEP +V Sbjct: 81 RPVNQIIKTERVRELVRNFSQSGFESSKQVFIICDADKMHVNAANSLLKVIEEPQSEVYI 140 Query: 164 ILISHASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKI 215 L++ ILSTI+SR F L + L K +L ++ + +++ Sbjct: 141 FLLTADENLILSTIKSRAQLFHFPKNQAYLLEKLEQAGLIKTQAELLTAYSQTEEEALRL 200 Query: 216 AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA---LQKMQQIADELLSQDQ 267 AA + A L +C++ S + + R+E A + K+ +AD+ Q+Q Sbjct: 201 AA----SPAFFDLAAECERFAS-----LCLNRKETAYLQVAKLASLADDKEKQEQ 246 >gi|305679810|ref|ZP_07402620.1| DNA polymerase III, delta' subunit [Corynebacterium matruchotii ATCC 14266] gi|305660430|gb|EFM49927.1| DNA polymerase III, delta' subunit [Corynebacterium matruchotii ATCC 14266] Length = 364 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 13/119 (10%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS------PTILSTIRSRCL 182 G WR++++D D + AAN LLK++EEPP + +L + ++ PT+LS RSR L Sbjct: 83 GKWRIVILDNADRLTDAAANTLLKTVEEPPAHTVIMLCAPSTDPEDIIPTLLS--RSRHL 140 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 I S+ +++ L + D++R +A+ + RA +LH+ +I + I Sbjct: 141 YIPQPSI--DDIVAILTRTDNATEADARR--AAMASGNHIGRARHLLHHQESQIRRTNI 195 >gi|218261650|ref|ZP_03476385.1| hypothetical protein PRABACTJOHN_02053 [Parabacteroides johnsonii DSM 18315] gi|218223902|gb|EEC96552.1| hypothetical protein PRABACTJOHN_02053 [Parabacteroides johnsonii DSM 18315] Length = 374 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 33/250 (13%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA------------- 55 +Y + + G E+I+K L +G + HA LF + G G L YA Sbjct: 1 MYFKDIIGQEEIKKRLIHSAQTGVVPHAQLFTEQGGAGAFPLALAYARYLNCTNRTETDS 60 Query: 56 -GHV--------LQNPD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYL---SYSL 99 GH L +PD F + + C ++ + L D Y + Sbjct: 61 CGHCPSCLKYNELAHPDLHFVFPIVSKKEKKKEVCDDYLTEWRDF-LKDRPYFDIDGWLD 119 Query: 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 + G + +I E I LSL +R++++ + +++ AN LLK +EEPP+ Sbjct: 120 HIDAGNSQALIYSKESDEIIRKLSLKIYEATYRILLVWLPEKLHQTCANKLLKIIEEPPR 179 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIAAY 218 + +++S +L TI SR I + ++ ++ + + D+K V A Sbjct: 180 NTVILMVSELPDLVLGTILSRAQRINVRGIHPEDIASSMISRFNLTPEDAKH--VAHLAN 237 Query: 219 GSVARAIKIL 228 GS +A++ + Sbjct: 238 GSYLKAVEAI 247 >gi|297565101|ref|YP_003684073.1| DNA polymerase III subunit delta' [Meiothermus silvanus DSM 9946] gi|296849550|gb|ADH62565.1| DNA polymerase III delta prime subunit [Meiothermus silvanus DSM 9946] Length = 296 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 33/58 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V +ID +N A NALLK LEEPP ILI+ + +L T+ SR L I F L Sbjct: 99 KVAVIDGAHLLNEPAGNALLKILEEPPAYARIILITPSRELVLPTLASRSLEIAFGPL 156 >gi|30314657|dbj|BAC76086.1| replication factor C 38 kDa subunit [Oryza sativa Japonica Group] Length = 354 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 45/69 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+++ N+ S Sbjct: 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPS 190 Query: 191 ENNLYKALE 199 E+ + + LE Sbjct: 191 EDQIVQVLE 199 >gi|313817549|gb|EFS55263.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA2] Length = 633 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae] gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae] Length = 352 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A +AL +++E+ Q F LI + I+ I SRC +F SL Sbjct: 134 FKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLG 193 Query: 191 ENNLYKAL----EQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 E + L EQ + + D+ + VKI+ G + RAI L Sbjct: 194 EEKVIARLQFICEQEGVQIDPDAYKSIVKISG-GDLRRAITTLQ 236 >gi|319936705|ref|ZP_08011118.1| hypothetical protein HMPREF9488_01951 [Coprobacillus sp. 29_1] gi|319808262|gb|EFW04827.1| hypothetical protein HMPREF9488_01951 [Coprobacillus sp. 29_1] Length = 317 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + L++ + +G++ HA L G+ A+L Y L D + C D C+ Sbjct: 16 QILTKSFQNGKIPHAFLLVGKN----ASLPAHYIAKSLICED----DLLAC--DNCND-C 64 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 +++ H D +YL TGK ++ D + I+ S ++ G ++ M++ ++ Sbjct: 65 RRIGQHNYADLIYL-------TGKDESIKKGD-VENIQEQFSKSSIEGKAKIYMLENIEN 116 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 A N+LLK LEEP + I +L TI+SRC I+ Sbjct: 117 STVEAMNSLLKILEEPIPGIYAIFTCQNINRVLPTIQSRCQVIQL 161 >gi|58336720|ref|YP_193305.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus NCFM] gi|227903282|ref|ZP_04021087.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC 4796] gi|58254037|gb|AAV42274.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus NCFM] gi|227868911|gb|EEJ76332.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC 4796] Length = 285 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD KQ+ S D L + + + +D+IR ++ L + R Sbjct: 57 PDGTCQNCKQILSGNHPDVLLVQ-------SDGKQTLGIDQIRPLKEELVKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I + +AAN LL LEEP V+ ILI++ S IL TIRSR I F++ + N Sbjct: 110 FFIKEAQKLTLSAANGLLNLLEEPVAPVVTILITNNSDQILPTIRSRTQIINFDNGKKRN 169 >gi|284931759|gb|ADC31697.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum str. F] Length = 260 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 7/104 (6%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I ++ N+ + N+LLK LEEP + IL + +L TI SRC+ NS E Sbjct: 90 KIYIIHQIEKANKESLNSLLKFLEEPKDNTIGILTTRKPYGVLDTIVSRCVRYSTNSYEE 149 Query: 192 ----NNLYKA--LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 N YKA LE +KIM + S D ++ + + ++++H Sbjct: 150 KVEFKNKYKAKELELIKIMFY-SYDDILQYENTKDIFKLLELIH 192 >gi|295692246|ref|YP_003600856.1| DNA polymerase iii, delta subunit [Lactobacillus crispatus ST1] gi|295030352|emb|CBL49831.1| DNA polymerase III, delta subunit [Lactobacillus crispatus ST1] Length = 285 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + + +D+IR ++ L+ + R I+ + AAN LL LEEP V+ ILI Sbjct: 83 KQTLGIDQIRPLKEELAKSPVESTRRFFFINEAQKLTLAAANGLLNLLEEPVAPVVTILI 142 Query: 167 SHASPTILSTIRSRCLSIKFNS 188 ++ S IL T+RSR I F++ Sbjct: 143 TNNSDQILPTVRSRTQIINFDN 164 >gi|42527476|ref|NP_972574.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818061|gb|AAS12485.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] Length = 429 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I ++++R+ ++ L +G +V++++ D M A NA LK LEEPP +FIL + Sbjct: 180 TIPINQVRKASSWVRLMP-SGIKKVLIVENADKMQEGARNAFLKILEEPPSYAVFILTTA 238 Query: 169 ASPTILSTIRSRCLSIKF 186 I+ TI SR + F Sbjct: 239 HRGAIMPTILSRVRTYTF 256 >gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter marburgensis str. Marburg] gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter marburgensis str. Marburg] Length = 317 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 43/235 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I L +Y M + L+F G G+GK T A +L Sbjct: 17 IVGQEHIIPRLKRYVEERSMPN-LMFTGPAGVGKTTTALALAREIL-------------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWR 132 + +FL L+ S +D +R I+ F L +R Sbjct: 62 -----------GEYWRQNFLELNAS---------DARGIDTVRTSIKNFCRLKPVGAPFR 101 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I +D VD M ++A +AL + +E + FIL + S I+ I+SRC +F L Sbjct: 102 IIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGR 161 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---DKIISSYI 240 ++ L EQ + D V A G + +AI IL +KI S I Sbjct: 162 HIISRLEYIAEQEGLEYEPQALDTVVYFAEGDLRKAINILQSAASLGEKITESSI 216 >gi|99032647|pdb|2GNO|A Chain A, Crystal Structure Of A Dna Polymerase Iii, Gamma Subunit-Related Protein (Tm0771) From Thermotoga Maritima Msb8 At 2.00 A Resolution Length = 305 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR I+ FL+ + + +++ + + AANA LK+LEEPP+ + +L + Sbjct: 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERXTQQAANAFLKALEEPPEYAVIVLNTRR 121 Query: 170 SPTILSTIRSRCLSI------KFNSLSENNLYKALEQLKIMGWDSKRDF 212 +L TI+SR + +F L + + E+L ++ +RDF Sbjct: 122 WHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLL----ERDF 166 >gi|308190302|ref|YP_003923233.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|319777696|ref|YP_004137347.1| DNA polymerase iii subunit delta [Mycoplasma fermentans M64] gi|4587466|gb|AAD25733.1|AF100324_1 DNA polymerase III subunit [Mycoplasma fermentans] gi|307625044|gb|ADN69349.1| predicted DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|318038771|gb|ADV34970.1| DNA polymerase III subunit delta [Mycoplasma fermentans M64] Length = 305 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++ + V+ ++ A N+LLK +EEP V+FIL ++ +L TI+SR ++I N+ Sbjct: 93 GQKKITVFKNVENASKAALNSLLKIIEEPSDNVVFILTTNNITKVLETIKSRSITININA 152 Query: 189 LSENNLYKAL--EQLK 202 S L + L E LK Sbjct: 153 PSNEELAEELKGENLK 168 >gi|227877630|ref|ZP_03995683.1| DNA polymerase III, delta subunit [Lactobacillus crispatus JV-V01] gi|256844528|ref|ZP_05550014.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] gi|256849083|ref|ZP_05554516.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|262047565|ref|ZP_06020520.1| DNA polymerase III, delta subunit [Lactobacillus crispatus MV-3A-US] gi|293379958|ref|ZP_06626059.1| conserved hypothetical protein [Lactobacillus crispatus 214-1] gi|312977916|ref|ZP_07789662.1| DNA polymerase III, delta subunit [Lactobacillus crispatus CTV-05] gi|227862778|gb|EEJ70244.1| DNA polymerase III, delta subunit [Lactobacillus crispatus JV-V01] gi|256613606|gb|EEU18809.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] gi|256713859|gb|EEU28847.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|260572141|gb|EEX28706.1| DNA polymerase III, delta subunit [Lactobacillus crispatus MV-3A-US] gi|290923471|gb|EFE00373.1| conserved hypothetical protein [Lactobacillus crispatus 214-1] gi|310895223|gb|EFQ44291.1| DNA polymerase III, delta subunit [Lactobacillus crispatus CTV-05] Length = 285 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 + + +D+IR ++ L+ + R I+ + AAN LL LEEP V+ ILI Sbjct: 83 KQTLGIDQIRPLKEELAKSPVESTRRFFFINEAQKLTLAAANGLLNLLEEPVAPVVTILI 142 Query: 167 SHASPTILSTIRSRCLSIKFNS 188 ++ S IL T+RSR I F++ Sbjct: 143 TNNSDQILPTVRSRTQIINFDN 164 >gi|117929177|ref|YP_873728.1| DNA polymerase III, delta prime subunit [Acidothermus cellulolyticus 11B] gi|117649640|gb|ABK53742.1| DNA polymerase III, delta prime subunit [Acidothermus cellulolyticus 11B] Length = 442 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 36/58 (62%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 W+V++++ D + AAN LLK++EEP + +++L A ++ TIRSRC + + Sbjct: 115 WQVVVLEDADRLTEGAANVLLKAIEEPAPRTVWLLCVPAPHDLVPTIRSRCRLVTLRT 172 >gi|238810241|dbj|BAH70031.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 306 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++ + V+ ++ A N+LLK +EEP V+FIL ++ +L TI+SR ++I N+ Sbjct: 94 GQKKITVFKNVENASKAALNSLLKIIEEPSDNVVFILTTNNITKVLETIKSRSITININA 153 Query: 189 LSENNLYKAL--EQLK 202 S L + L E LK Sbjct: 154 PSNEELAEELKGENLK 169 >gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] gi|150415670|sp|A1RSA2|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ SG M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKSRLREFVKSGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I SRC Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRC 152 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILH 229 +F+ + + + + L+ + K G + K D + + + G + +AI IL Sbjct: 153 AVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQ 204 >gi|94986456|ref|YP_594389.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730705|emb|CAJ54067.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 319 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 21/140 (15%) Query: 76 PC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P Q+ + HD L + I +D+IR++R A++ +V Sbjct: 93 PCLTCPTCLQIGAKLFHDLFLLHGA--------EGSIKIDDIRKLRTVFGEPAHSNGKKV 144 Query: 134 IMIDPVDGMNRNAANALLKSLEEP-PQKVLFILISHAS---PTILSTIRSRCLSIKFNSL 189 +++ + AANALLKSLEEP PQ +L+ PT++S RS +++ + S+ Sbjct: 145 VILAEAQHLRTEAANALLKSLEEPHPQTCCLLLVPQREQLLPTLVS--RSWTITLPWTSV 202 Query: 190 SENNLYKALEQLKIMGWDSK 209 ++ + +E+ W+ K Sbjct: 203 MTSSSSELIEE-----WEEK 217 >gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans 345-15] gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans 345-15] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 40/196 (20%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ + NQ+ +I + LS++ M H LLF G G GK T A H L Sbjct: 17 RSLKEIVNQK-----EIVERLSKFVAEKNMPH-LLFAGPPGTGKTT-----AAHAL---- 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL- 122 +H L+ Y Y L R + T+ E +++ F Sbjct: 62 ----------------------AHDLYGDNYTQYMLELNASDERGIDTIRE--KVKEFAR 97 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T ++++++D D M +A AL + +E FIL ++ I+ I+SRC Sbjct: 98 SKTPPDIPFKIVLLDEADNMTADAQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCA 157 Query: 183 SIKFNSLSENNLYKAL 198 +F L ++++ L Sbjct: 158 FFRFTPLGKDDVVGRL 173 >gi|313891283|ref|ZP_07824901.1| putative DNA polymerase III, delta' subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120350|gb|EFR43471.1| putative DNA polymerase III, delta' subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S T G +V +I + M+ NAANALLK +EEP L+++ Sbjct: 83 VIKTETIREMLKDFSRTGYEGEQQVFIIKDCEKMHINAANALLKHIEEPQSASYIFLLTN 142 Query: 169 ASPTILSTIRSR 180 +L TI+SR Sbjct: 143 DDNQVLPTIKSR 154 >gi|317495398|ref|ZP_07953767.1| hypothetical protein HMPREF0432_00369 [Gemella moribillum M424] gi|316914457|gb|EFV35934.1| hypothetical protein HMPREF0432_00369 [Gemella moribillum M424] Length = 277 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%) Query: 107 RTVITVDEIRRIRYFLSLTANTG---YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 T I +E++ ++ S+ + G YW I ++ M AAN+LLK LEEP + ++ Sbjct: 83 ETSIKKEEVQLLKKEFSIKSYYGKKIYW----IKDIEKMTDQAANSLLKFLEEPEEDIIA 138 Query: 164 ILISHASPTILSTIRSRCLSIK 185 IL + +L TI SRC IK Sbjct: 139 ILSCKNTSAVLPTIISRCQQIK 160 >gi|300779972|ref|ZP_07089828.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium genitalium ATCC 33030] gi|300534082|gb|EFK55141.1| DNA-directed DNA polymerase III subunit delta' [Corynebacterium genitalium ATCC 33030] Length = 439 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 109 VITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 I++D +R I + WRVI+I+ D +R A A+LK++EEPP+ + I+ + Sbjct: 111 TISIDTVRDTIIPAATRLPTVANWRVIIIEDADRFSREAPEAILKTVEEPPETTVIIMCA 170 Query: 168 HAS-PTILS-TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 ++ P S T+RSRC + + S + + + L + R + + + RA Sbjct: 171 PSTDPQDFSVTLRSRCRHLYVPAPSVDEIVRILVSEEGAAEPDAR-LAAVTSLRHIGRAR 229 Query: 226 KILHYDCDK 234 ++++ D + Sbjct: 230 RLVNSDASQ 238 >gi|94993723|ref|YP_601821.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS10750] gi|94547231|gb|ABF37277.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS10750] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHTNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGEAYMFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|322380271|ref|ZP_08054491.1| DNA polymerase III subunit delta' [Helicobacter suis HS5] gi|321147308|gb|EFX41988.1| DNA polymerase III subunit delta' [Helicobacter suis HS5] Length = 222 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 13/97 (13%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR--CL--------- 182 + I + N A NALLK LEEPP+K LFIL + +L TIRSR C+ Sbjct: 76 VCIIAANTFNIFAQNALLKILEEPPEKTLFILFAKHKHVLLPTIRSRLPCIDKRVKPTPK 135 Query: 183 --SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 + + S + +Y+ L+++ W+ ++I+A Sbjct: 136 PFGLDLRTCSLDEVYRYLQRIDQENWNKAETQMQISA 172 >gi|315612951|ref|ZP_07887862.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis ATCC 49296] gi|315315061|gb|EFU63102.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus sanguinis ATCC 49296] Length = 296 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 24/172 (13%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG---------WDSKRDFVKIAAYG 219 IL TIRSR F E L EQ+ ++ S+ + K+A G Sbjct: 146 DEEKILPTIRSRTQIFHFKK-QEEKLILLFEQMGLVKKKATLLAQFCQSRAEAEKLANQG 204 Query: 220 S----VARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ 267 S V + ++L + K SY+ + K+ +AD+ QDQ Sbjct: 205 SFWTLVDESERLLTWLLAKKKESYLQVA----------KLASLADDKEKQDQ 246 >gi|195978710|ref|YP_002123954.1| DNA polymerase III subunit delta' [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975415|gb|ACG62941.1| DNA polymerase III delta' subunit HolB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + AP C C Q+ H +D Sbjct: 22 RLNHAYLFSGD--FANFDMALFLAKTLFCEQKRGNAPCHHCRA--C-----QLIEH--ND 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P G+ +I D ++ + S T G +V +I D M+ NAAN++L Sbjct: 71 FSDVTI-LEP-VGQ---LIKTDTVKEMMTNFSQTGYEGKRQVFIIKDCDKMHVNAANSIL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP L+++ +L TI+SR F Sbjct: 126 KYIEEPQGDCYMFLLTNDDNRVLPTIKSRTQVFHF 160 >gi|148272079|ref|YP_001221640.1| DNA polymerase III subunits gamma and tau [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830009|emb|CAN00937.1| DNA polymerase III gamma and tau subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 826 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 25/216 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P L G + L + R++HA LF G +G GK T R L + Sbjct: 7 RRYRPENFAELIGQTQVTDPLRTALRTNRVNHAYLFSGPRGCGK-TTSARILARCLNCAE 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P +C P + + S +L + S N VD+ R IR Sbjct: 66 GP--TDTPCGVC---PSCVELSRDGSGSLDVVEIDAASHN----------GVDDARDIRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ ++D + NALLK +EEPP+ V FI + ++ TIRSR Sbjct: 111 RAVFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSR 170 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA 216 F + + +E L S+ + V++A Sbjct: 171 THHYPFRLVPPAQMLDYVEHL------SREESVQVA 200 >gi|206895978|ref|YP_002246825.1| DNA polymerase III, gamma subunit-related protein [Coprothermobacter proteolyticus DSM 5265] gi|206738595|gb|ACI17673.1| DNA polymerase III, gamma subunit-related protein [Coprothermobacter proteolyticus DSM 5265] Length = 232 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I FL+ +G + +++ D + A NA LK+LEEPP+ +L Sbjct: 53 TLGIDAVRTIEEFLAFVPGSGV-KYVLVLGGDNLTPEAQNAFLKTLEEPPRYARVLLFCQ 111 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 +L T+RSR ++I + + L Sbjct: 112 RWSNLLPTVRSRVVNIPLPAKTRTEL 137 >gi|221106575|ref|XP_002170406.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 260 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 17/135 (12%) Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY----WRVIMIDPVD 140 LHD LY S L R + + E +++ F S + ++ G ++V+++D D Sbjct: 48 LHD-LYKSRVLELNASDERGIQVIRE--KVKNFASQSVSSFKVDGTPCPPFKVVILDEAD 104 Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 M +A AL +++E + F LI + I+ I SRC +F LS N +Y EQ Sbjct: 105 SMTTSAQAALRRTMERQTKTTRFCLICNYVSRIIEPITSRCAKFRFKELSSNAIY---EQ 161 Query: 201 LKIMGWDSKRDFVKI 215 LK + S+ + VKI Sbjct: 162 LK---YISRMEAVKI 173 >gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta] gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta] Length = 353 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ + F LI + I+ I SRC +F +L Sbjct: 135 FKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALG 194 Query: 191 ENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E+ + LE +KI D+ + VKI+ G + RAI L Sbjct: 195 EDKVIDRLKYICGLEGVKIE-EDAYKSIVKISG-GDLRRAITTLQ 237 >gi|321398829|emb|CBZ09063.1| putative replication factor C, subunit 5 [Leishmania infantum JPCM5] gi|322504050|emb|CBZ39137.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 351 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LLF G G GK T H + P S VR+ + Q++ + D LS Sbjct: 37 LLFYGPSGSGKKTRAMAML-HEIYGP--SVYSVRLEHKS------VQVSDSKVVDIATLS 87 Query: 97 ----YSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-----WRVIMIDPVDGMNRNA 146 +NP G + I + IR I + L ++V++++ VD M+R+A Sbjct: 88 SPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLHTTASNRKNVPYKVVVLNEVDKMSRSA 147 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +AL +++E+ L+ +++ ++ +RSRCL I+ S S++NL A++++ Sbjct: 148 QHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHSKDNLKLAVQRV 202 >gi|322378377|ref|ZP_08052832.1| DNA polymerase III subunit delta' [Helicobacter suis HS1] gi|321149190|gb|EFX43635.1| DNA polymerase III subunit delta' [Helicobacter suis HS1] Length = 222 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 13/97 (13%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR--CL--------- 182 + I + N A NALLK LEEPP+K LFIL + +L TIRSR C+ Sbjct: 76 VCIIAANTFNIFAQNALLKILEEPPEKTLFILFAKHKHVLLPTIRSRLPCIDKRVKPTPK 135 Query: 183 --SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 + + S + +Y+ L+++ W+ ++I+A Sbjct: 136 PFGLDLRTCSLDEVYRYLQRIDQENWNKAETQMQISA 172 >gi|251771719|gb|EES52294.1| DNA polymerase III [Leptospirillum ferrodiazotrophum] Length = 216 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 14/171 (8%) Query: 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 LS+ G A+L G +G+GK T + +L AP C C Sbjct: 23 LSRILAGGLRSGAVLLWGPEGVGKRTTALALSRRILCAEPQEGAPCGRCLS--CR---TP 77 Query: 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN 143 +A+H DF L + G+ ++ I +D +R + ++ R+ ++D V + Sbjct: 78 LAAHP--DFHLL------EPGETQS-IGIDAVRELLRGTLESSLVSPVRIALLDEVHRLT 128 Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 A+N+LLKSLEEP +LF L+S + +L T+ SR L ++F LS+ +L Sbjct: 129 PEASNSLLKSLEEPSDNLLFFLVSPSPDRLLPTLLSRLLKVRFLPLSDGDL 179 >gi|238762943|ref|ZP_04623911.1| DNA polymerase III subunit gamma [Yersinia kristensenii ATCC 33638] gi|238698954|gb|EEP91703.1| DNA polymerase III subunit gamma [Yersinia kristensenii ATCC 33638] Length = 598 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 V++ R + + G ++V +ID V ++R++ NALLK+LEEPP V F+L + Sbjct: 45 VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQ 104 Query: 172 TILSTIRSRCL 182 + TI SRCL Sbjct: 105 KLPVTILSRCL 115 >gi|147918695|ref|YP_687582.1| replication factor C small subunit [uncultured methanogenic archaeon RC-I] gi|121687726|sp|Q0W037|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [uncultured methanogenic archaeon RC-I] Length = 322 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 46/264 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH+ I + L Y SG + H LLF G G+GK A Sbjct: 11 YRPRRLEDVIGHQQITRRLISYVKSGNLPH-LLFSGPPGVGKTACAVALA---------- 59 Query: 66 KAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +++ H +F+ L+ S + G +D +R + Sbjct: 60 ----------------RELYGETWHSNFIELNAS--DERG-------IDVVRNNIKNFAR 94 Query: 125 TANTG--YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 TA G +++I +D D + +A +AL +++E FI+ + S I+ I+SRC Sbjct: 95 TAPLGEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCA 154 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILHYDCDKIISS 238 +F L+ ++ + ++ K G ++D + Y G + RAI L Sbjct: 155 VYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDI 214 Query: 239 YIDLIHIPRQEYALQKMQQIADEL 262 D+I+ Q + K ++I D L Sbjct: 215 TADVIY---QTTSTAKPKEIEDML 235 >gi|308176117|ref|YP_003915523.1| DNA polymerase III subunits gamma and tau [Arthrobacter arilaitensis Re117] gi|307743580|emb|CBT74552.1| DNA polymerase III, subunits gamma and tau [Arthrobacter arilaitensis Re117] Length = 1148 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 70/182 (38%), Gaps = 37/182 (20%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMC-------NPDPCSPFV 81 R++HA LF G +G GK T R L Q P + P C N P S V Sbjct: 8 RVNHAYLFSGPRGCGKTTSA-RILARCLNCEQGP--TPVPCGTCASCVDLANGGPGSLDV 64 Query: 82 KQM--ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 ++ ASH VD+ R +R + +++ +ID Sbjct: 65 IEIDAASHG----------------------GVDDARDLRERATFAPTRDRYKIFIIDEA 102 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + NALLK +EEPP + FI + ++ TIRSR F + L L+ Sbjct: 103 HMVTAAGFNALLKIVEEPPAHIKFIFATTEPEKVIGTIRSRTHHYPFRLVPPEALLAYLQ 162 Query: 200 QL 201 L Sbjct: 163 LL 164 >gi|94989836|ref|YP_597936.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS10270] gi|94543344|gb|ABF33392.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS10270] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 26/212 (12%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 K +EEP + L+++ +L TI+SR +F +E LY+ ++ ++ +K Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQFPK-NEAYLYQLAQEKGLLNHQAKL- 183 Query: 212 FVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 K+A S H +C S ++LI Sbjct: 184 VAKLATNTS--------HLECLLQTSKLLELI 207 >gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16] Length = 551 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 25/195 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE + K L+++ + + H LLF G G GK T A Sbjct: 232 YRPSKLNELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAAR--------- 281 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +M +P S V ++ + D + N T++ + + ++ F S + Sbjct: 282 ----KMYHPSKMSSMVLELNAS---DERGIDVVRN-------TIVNFAQTKGLQAFASAS 327 Query: 126 -ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ ++++++D D M ++A NAL + +E+ V F +I + +I+ I+SRC Sbjct: 328 DKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRF 387 Query: 185 KFNSLSENNLYKALE 199 +F L ++ + L+ Sbjct: 388 RFAPLDQSLIVPRLD 402 >gi|71910145|ref|YP_281695.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS5005] gi|71852927|gb|AAZ50950.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS5005] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEP + L+++ +L TI+SR +F +E LY+ ++ +++ +K Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQFPK-NEAYLYQLAQEKELLNHQAK 182 >gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar] gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar] Length = 335 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 36/188 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + A + + +F+ Sbjct: 28 LISHKDILSTIQKFISEDRLPH-LLFYGPPGTGKTSTVLASAKQLYKEKEFNA------- 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 80 ---------------------MVLELNASDDRG-----IDVVRGPILSFASTRTIFKKGF 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M R+A NAL + +E+ + F LI + I+ ++SRC +F LS+ Sbjct: 114 KLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQ 173 Query: 192 NNLYKALE 199 + + LE Sbjct: 174 DQMIPRLE 181 >gi|170780614|ref|YP_001708946.1| DNA polymerase III subunits gamma and tau [Clavibacter michiganensis subsp. sepedonicus] gi|169155182|emb|CAQ00282.1| DNA polymerase III subunit gamma [Clavibacter michiganensis subsp. sepedonicus] Length = 837 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P L G + L + R++HA LF G +G GK T A + + Sbjct: 14 RRYRPENFAELIGQTQVTDPLRTALRTNRVNHAYLFSGPRGCGKTTSARILARCLNCAEG 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P +C P + + S +L + S N VD+ R IR Sbjct: 74 P--TDTPCGVC---PSCVELSRDGSGSLDVVEIDAASHN----------GVDDARDIRER 118 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V FI + ++ TIRSR Sbjct: 119 AVFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSRT 178 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA 216 F + + +E L S+ + V++A Sbjct: 179 HHYPFRLVPPAQMLDYVEHL------SREESVQVA 207 >gi|167562454|ref|ZP_02355370.1| DNA polymerase III subunit delta' [Burkholderia oklahomensis EO147] Length = 215 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 21/169 (12%) Query: 32 RMH--HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPF-------- 80 R H HALL G+ GIGK A G + + P S P C C+ F Sbjct: 17 RAHWPHALLLYGQAGIGKLAFARHLAKGFLCETPHESGEPCGACAA--CTWFEQGNHPDY 74 Query: 81 ---VKQMASHALHDFLYLSYSLNPKTGKWRTV-----ITVDEIRRIRYFLSLTANTGYWR 132 V + + L + + G +T I ++++R + F + ++ G R Sbjct: 75 RIVVPEALAGELPGAADEPKAADADEGGKKTKTPSKEIKIEQVRALVDFCGIASHRGGAR 134 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 V+++ P + +N AANALLK+LEEP V+F+L+S +L TI SRC Sbjct: 135 VVVLYPAEALNVAAANALLKTLEEPSAGVVFLLVSARIDRLLPTIVSRC 183 >gi|293365190|ref|ZP_06611907.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus oralis ATCC 35037] gi|307703728|ref|ZP_07640669.1| DNA polymerase III delta prime subunit [Streptococcus oralis ATCC 35037] gi|291316640|gb|EFE57076.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus oralis ATCC 35037] gi|307622563|gb|EFO01559.1| DNA polymerase III delta prime subunit [Streptococcus oralis ATCC 35037] Length = 296 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3] gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E+I L +Y + + LLF G GIGK T Sbjct: 22 YRPGTLGEVIGQEEITDRLERYVERDDLPN-LLFSGSAGIGKTT---------------- 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHD-FLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS 123 C + +++ D FL L+ S + +D +R RI+ F Sbjct: 65 ------C----ATAIAREVYGEDWRDNFLELNASDDRG---------IDVVRGRIKEFAR 105 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +R+I +D D + +A +AL +++E+ FIL + S I+ I+SRC Sbjct: 106 ASFGGYSYRIIFLDEADSLTSDAQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAV 165 Query: 184 IKFNSLSENNLYKALEQLK-IMG---WDSKRDFVKIAAYGSVARAIKILH 229 +F+ +S+ + + + ++ I G D + + AA G + RA+ L Sbjct: 166 FRFSPISDAAVGERIREIAHIEGIEITDGGVEALVYAADGDMRRAVNSLQ 215 >gi|307706441|ref|ZP_07643250.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK321] gi|307618151|gb|EFN97309.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK321] Length = 296 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +L TIRSR F E L LEQ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLIHQLEQ 176 >gi|260436291|ref|ZP_05790261.1| DNA polymerase III subunit delta' [Synechococcus sp. WH 8109] gi|260414165|gb|EEX07461.1| DNA polymerase III subunit delta' [Synechococcus sp. WH 8109] Length = 310 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 18/213 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD----FSKAPV 69 L G LS R+ A LF G +G+G+ R+ +L + + + Sbjct: 5 LIGQSLAVDLLSAALAQERVAPAYLFAGPEGVGRQLAAVRFLEGLLADGQPSSRERRRLL 64 Query: 70 RMCNPD-----PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 +PD P ++ + A + LS P+ + +++IR I L+ Sbjct: 65 ERNHPDLLWVEPTYQHQGRLLTRAEAEEAGLSRRTPPQ-------LRLEQIRDIGRCLAR 117 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I+ + M AANALLK+LEEP VL IL++ A +LSTIRSRC I Sbjct: 118 QPVEAKRGMVVIEAAEAMAEAAANALLKTLEEPGHGVL-ILLTSAPERLLSTIRSRCQLI 176 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAA 217 +F L+ + + LE+ DS + + +AA Sbjct: 177 RFLRLNPEAMAQVLERTDATSQDSP-ELLALAA 208 >gi|26554268|ref|NP_758202.1| DNA polymerase III subunit delta' [Mycoplasma penetrans HF-2] gi|26454277|dbj|BAC44606.1| predicted DNA polymerase [Mycoplasma penetrans HF-2] Length = 275 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 + ++I ++ +N+ AN LLK++E P + +I ++ I++TI+SRC+ K S E Sbjct: 99 KFLIIYGIENVNKQIANMLLKNIENPSKNTYYIFVTRNHNNIINTIKSRCVFYKIIS-EE 157 Query: 192 NNLYKALEQLKI------------MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 K LE KI D DF + + + L D +K+IS + Sbjct: 158 KRFIKELESNKIDQRYFSYFLLNFYSIDEVLDFYNNETFSKIVNVYETLINDKNKLISIH 217 Query: 240 IDLI 243 LI Sbjct: 218 KSLI 221 >gi|58697229|ref|ZP_00372626.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila simulans] gi|58536440|gb|EAL59856.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila simulans] Length = 234 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 ++D+I+ I + + + ++V +ID V ++ +A NALLK+LEEPP V FIL + Sbjct: 13 SIDDIKVILGDICYSPISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEI 72 Query: 171 PTILSTIRSRC 181 I TI +RC Sbjct: 73 KKIPITIIARC 83 >gi|225867972|ref|YP_002743920.1| DNA polymerase III, delta' subunit [Streptococcus equi subsp. zooepidemicus] gi|225701248|emb|CAW98211.1| putative DNA polymerase III, delta' subunit [Streptococcus equi subsp. zooepidemicus] Length = 291 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + AP C C Q+ H +D Sbjct: 22 RLNHAYLFSGD--FANFDMALFLAKTLFCEQKRGNAPCHHCRT--C-----QLIEH--ND 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P G+ +I D ++ + S T G +V +I D M+ NAAN++L Sbjct: 71 FSDVTI-LEP-VGQ---LIKTDTVKEMMTNFSQTGYEGKRQVFIIKDCDKMHVNAANSIL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP L+++ +L TI+SR F Sbjct: 126 KYIEEPQGDCYMFLLTNDDNRVLPTIKSRTQVFHF 160 >gi|46451028|gb|AAS97673.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 305 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++D +R +R L +RVI+ + AANALLKSLEEP F+L++ Sbjct: 87 ISIDSVREVRSILGEPPRGDGYRVIVFAEAQSLGEAAANALLKSLEEPRPGTSFLLLAPQ 146 Query: 170 SPTILSTIRSR 180 +L T+ SR Sbjct: 147 RERLLPTLVSR 157 >gi|325473734|gb|EGC76923.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 429 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I ++++R+ ++ L +G +V++++ D M A NA LK LEEPP +F+L + Sbjct: 180 TIPINQVRKASSWVRLMP-SGIKKVLIVENADKMQEGARNAFLKILEEPPSYAVFVLTTA 238 Query: 169 ASPTILSTIRSRCLSIKF 186 I+ TI SR + F Sbjct: 239 HRGAIMPTILSRVRTYTF 256 >gi|307709125|ref|ZP_07645584.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK564] gi|307620071|gb|EFN99188.1| DNA polymerase III delta prime subunit [Streptococcus mitis SK564] Length = 296 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis mellifera] Length = 303 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 33/219 (15%) Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA--------NTGYWRVIMI 136 A+ L LY L R + V E +I+ F LTA + +++I++ Sbjct: 58 AARQLFGSLYKERVLELNASDERGIQVVRE--KIKSFAQLTAGGMRDDGKSCPPFKIIVL 115 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 D D M A AL +++E+ F LI + I+ + SRC +F L EN + + Sbjct: 116 DEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIE 175 Query: 197 AL------EQLKIMGWDSKRDFVKI--AAYGSVARAIKILHY-------DCDKIISSYID 241 L E LK+ K +KI + G + RAI L D + + ++ Sbjct: 176 RLEYICKEEDLKV----EKPVLLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLE 231 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +I I ++ + ++ D ++D A +F+ +F+L+ Sbjct: 232 IIGIVPDKW----LDELIDVCKTKDYSKAEEFVDQFMLE 266 >gi|15835077|ref|NP_296836.1| DNA polymerase III subunit delta' [Chlamydia muridarum Nigg] gi|270285244|ref|ZP_06194638.1| DNA polymerase III subunit delta' [Chlamydia muridarum Nigg] gi|270289263|ref|ZP_06195565.1| DNA polymerase III subunit delta' [Chlamydia muridarum Weiss] gi|301336640|ref|ZP_07224842.1| DNA polymerase III subunit delta' [Chlamydia muridarum MopnTet14] gi|7190502|gb|AAF39310.1| DNA polymerase III, tau subunit, putative [Chlamydia muridarum Nigg] Length = 290 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 20/152 (13%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 ++ A++ G+ +T + YA +L+ SP ++ LH Sbjct: 17 KVPSAIILHGQDLSTLSTCAYEYASLILKE---------------GSPHASYKIANRLHP 61 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 +Y YS GK R + T++ R IR + + +++ +I D ++ +A +A L Sbjct: 62 DIY-EYS---PQGKGR-LHTIETPRAIRKNIWIHPYESSYKIYIIYEADRISLDAISAFL 116 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 K LE+PP +FIL+S + TIRSRC+S Sbjct: 117 KLLEDPPYYSIFILVSALPQRLPPTIRSRCVS 148 >gi|304569736|ref|YP_012413.2| DNA polymerase III subunit delta' [Desulfovibrio vulgaris str. Hildenborough] gi|311235248|gb|ADP88102.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio vulgaris RCH1] Length = 320 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++D +R +R L +RVI+ + AANALLKSLEEP F+L++ Sbjct: 102 ISIDSVREVRSILGEPPRGDGYRVIVFAEAQSLGEAAANALLKSLEEPRPGTSFLLLAPQ 161 Query: 170 SPTILSTIRSR 180 +L T+ SR Sbjct: 162 RERLLPTLVSR 172 >gi|167042652|gb|ABZ07373.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_ANIW133M9] gi|167043915|gb|ABZ08603.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_APKG3H9] gi|167044610|gb|ABZ09283.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_APKG7F11] Length = 318 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 19/193 (9%) Query: 97 YSLNPKTGKWRTVITVDE-IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 Y+L R + V E +++ F L + ++I++D D M +A AL + E Sbjct: 72 YTLELNASDERGINMVRERVKKFSRFAGLDTEIPF-KIIILDEADEMTADAQTALRRITE 130 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK-----R 210 + + FILI++ I+ I+SRC+ KF +S+ + L QLK +G K + Sbjct: 131 DTAKICRFILIANNLSKIIKPIQSRCVVFKFTKISDKEI---LSQLKSIGKKEKIKADEK 187 Query: 211 DFVKIAAY--GSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADEL-LSQDQ 267 I Y G + AI IL SS + + L K + D L L+ D Sbjct: 188 GLSAICDYTDGDLRHAINILQAAA----SSGNVTESVVKSVVGLTKTNDVQDVLKLALDG 243 Query: 268 KI--AFDFLIEFI 278 KI A D +IE I Sbjct: 244 KISDARDKMIELI 256 >gi|67809793|gb|AAY81977.1| DNA polymerase III gamma and tau subunit [Wolbachia pipientis] Length = 446 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 ++D+I+ I + + + ++V +ID V ++ +A NALLK+LEEPP V FIL + Sbjct: 52 SIDDIKVILGDICYSPISSKFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEI 111 Query: 171 PTILSTIRSRC 181 I TI +RC Sbjct: 112 KKIPITIIARC 122 >gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi] gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi] Length = 356 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 22/178 (12%) Query: 117 RIRYFLSLTANT--------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I+ F LTA++ +++I++D D M A AL +++E+ + F LI + Sbjct: 116 KIKNFAQLTASSVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 I+ I SRC +F +L E + L+ + D + ++ AY S+ +KI Sbjct: 176 YVSRIIVPITSRCSKFRFKALGETQIITRLQHI----CDLESVSIEPDAYQSI---VKIS 228 Query: 229 HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D + I++ + E+ + +D+LL I +L +++ E+C+S Sbjct: 229 GGDMRRAITTLQSCYRLKGAEHTIN-----SDDLLEMSGIIPEHYLDDYL--EVCRSG 279 >gi|315037616|ref|YP_004031184.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1112] gi|312275749|gb|ADQ58389.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1112] Length = 285 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PD +Q+ S D L + + + + +D++R ++ L + R Sbjct: 57 PDGTCQNCRQILSGNHPDVLLVG-------PEGKQTLGIDQVRPLKEELVKSPVESSRRF 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 I+ + +AAN LL LEEP V+ ILI++ S IL TIRSR I F++ Sbjct: 110 FFINEAQKLTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTIRSRTQIINFDN 164 >gi|322435111|ref|YP_004217323.1| DNA polymerase III, delta prime subunit [Acidobacterium sp. MP5ACTX9] gi|321162838|gb|ADW68543.1| DNA polymerase III, delta prime subunit [Acidobacterium sp. MP5ACTX9] Length = 378 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Query: 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 K G+ RTVI +R +Y S R + I + AAN+LLK LEEPP Sbjct: 139 KLGQVRTVI-----QRAQYLPSEGP-----RKLFIFTASNFMKEAANSLLKLLEEPPDYA 188 Query: 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK-RDFVKIAAYGS 220 IL +L TIRSRC ++ +L L L + W K R V A G+ Sbjct: 189 HLILCVENIGELLPTIRSRCAVVRLGALPIEELEMLLADRRPE-WQPKHRTLVARLAQGA 247 Query: 221 VARAIKILHYDCDKIISSYIDLIHIPR 247 +A L +D + ++ D + + R Sbjct: 248 AGKA---LGFDLEGFTAARADALVMLR 271 >gi|270284546|ref|ZP_05966311.2| DNA polymerase III subunit gamma/tau [Bifidobacterium gallicum DSM 20093] gi|270276403|gb|EFA22257.1| DNA polymerase III subunit gamma/tau [Bifidobacterium gallicum DSM 20093] Length = 935 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 17/200 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G + + L + + ++ HA LF G +G GK + A + Q Sbjct: 11 RRYRPDTFEGVVGQDQVTVPLMRALDANKLTHAYLFSGPRGCGKTSSARILARCINCAQG 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C K +A+ + G V++ R +R Sbjct: 71 P--TSHPCGECE------SCKDLANGGPGSIDVVEIDAASHNG-------VEDARELRDR 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRSR Sbjct: 116 AGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPERVIGTIRSRT 175 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + + + LEQ+ Sbjct: 176 HHYPFRLVPQEIMGPYLEQI 195 >gi|120601235|ref|YP_965635.1| DNA polymerase III subunit delta' [Desulfovibrio vulgaris DP4] gi|120561464|gb|ABM27208.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio vulgaris DP4] Length = 320 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I++D +R +R L +RVI+ + AANALLKSLEEP F+L++ Sbjct: 102 ISIDSVREVRSILGEPPRGDGYRVIVFAEAQSLGEAAANALLKSLEEPRPGTSFLLLAPQ 161 Query: 170 SPTILSTIRSR 180 +L T+ SR Sbjct: 162 RERLLPTLVSR 172 >gi|227499764|ref|ZP_03929864.1| DNA polymerase III delta subunit [Anaerococcus tetradius ATCC 35098] gi|227218150|gb|EEI83416.1| DNA polymerase III delta subunit [Anaerococcus tetradius ATCC 35098] Length = 263 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 73 NPDPCSPFVKQMASHALHDF-LYLSYSLNPK---TGKWRTVITVDEIRRIRYFLSLTANT 128 NPD F + A + + NP K +VI ++ IR + + L Sbjct: 23 NPDYNKTFALEFARKVFESYGIVQENETNPDLYLIDKEGSVIDIESIREMLKNIYLRPEN 82 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ +I + + ANA+LKSLEE V I TIL TIRSRC ++ Sbjct: 83 SKIKIYIIHQAQDLRQEGANAMLKSLEELKSYVKLIFTCVNKDTILPTIRSRCQTL 138 >gi|223932403|ref|ZP_03624405.1| DNA polymerase III, delta prime subunit [Streptococcus suis 89/1591] gi|302023624|ref|ZP_07248835.1| DNA polymerase III subunit delta' [Streptococcus suis 05HAS68] gi|330832636|ref|YP_004401461.1| DNA polymerase III subunit delta' [Streptococcus suis ST3] gi|223898857|gb|EEF65216.1| DNA polymerase III, delta prime subunit [Streptococcus suis 89/1591] gi|329306859|gb|AEB81275.1| DNA polymerase III, delta' subunit [Streptococcus suis ST3] Length = 294 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VI D IR + S + +V +I + M+ NAAN+LLK +EEP + +L++ Sbjct: 85 NVIKTDTIRELVKNFSQSGFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHILLLT 144 Query: 168 HASPTILSTIRSRCLSIKF 186 + +L TI+SR I F Sbjct: 145 NQEEAVLPTIKSRTQIIGF 163 >gi|332180893|gb|AEE16581.1| DNA polymerase III domain-containing protein [Treponema brennaborense DSM 12168] Length = 417 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH- 168 I V ++RR + TG +V++++ D M + NA+LK LEEPP+ +FIL + Sbjct: 187 IPVAQMRRASVWARYRTGTGK-KVLIVENADRMQESVRNAMLKILEEPPEDTVFILTTSR 245 Query: 169 ---ASPTILSTIRS 179 PTILS +R+ Sbjct: 246 RGAVMPTILSRVRT 259 >gi|312796385|ref|YP_004029307.1| DNA polymerase III, delta' subunit [Burkholderia rhizoxinica HKI 454] gi|312168160|emb|CBW75163.1| DNA polymerase III, delta' subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 357 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 49/72 (68%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I ++++R + F S+ ++ G RV+++ P + +N AANALLK+LEEPP V+F+L+S Sbjct: 124 IRIEQVRALLDFCSIGSHRGGRRVVVLFPAEALNVAAANALLKTLEEPPSGVVFLLVSAN 183 Query: 170 SPTILSTIRSRC 181 +L TI SRC Sbjct: 184 VERLLPTIVSRC 195 >gi|21909826|ref|NP_664094.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS315] gi|28896481|ref|NP_802831.1| DNA polymerase III subunit delta' [Streptococcus pyogenes SSI-1] gi|21904012|gb|AAM78897.1| putative DNA polymerase III delta prime subunit [Streptococcus pyogenes MGAS315] gi|28811732|dbj|BAC64664.1| putative DNA polymerase III delta prime subunit [Streptococcus pyogenes SSI-1] Length = 291 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEP + L+++ +L TI+SR +F +E LY+ ++ ++ +K Sbjct: 126 KYIEEPQGEAYMFLLTNDDNKVLPTIKSRTQVFQFPK-NEAYLYQLAQEKGLLNHQAK 182 >gi|326488121|dbj|BAJ89899.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 354 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 45/69 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD ++R A ++L +++E+ IL ++S + +RSRCL+++ N+ + Sbjct: 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPT 190 Query: 191 ENNLYKALE 199 E+ + + LE Sbjct: 191 EDQIVQVLE 199 >gi|168028662|ref|XP_001766846.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681825|gb|EDQ68248.1| predicted protein [Physcomitrella patens subsp. patens] Length = 354 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 17/201 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++ H++ L G H LLF G G GK TL + + S Sbjct: 7 YRPRTLDKVMVHKEEATNLKNLIAQGDCPH-LLFYGPSGAGKKTLIMALLREMFGS---S 62 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-----LNPKTGKWRTVITVDEIRR--- 117 V++ N P+ + + + L S LNP ++ V EI + Sbjct: 63 AEKVKVEN----KPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMA 118 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 L + N G+ +V++++ VD +++ A ++L +++E+ +L +++ ++ + Sbjct: 119 KNRPLDVAGNRGF-KVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAV 177 Query: 178 RSRCLSIKFNSLSENNLYKAL 198 RSRC++I+ NS S +++ L Sbjct: 178 RSRCVNIRINSPSRDDIVDVL 198 >gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Thermoproteus neutrophilus V24Sta] gi|170934373|gb|ACB39634.1| Replication factor C [Thermoproteus neutrophilus V24Sta] Length = 319 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 39/189 (20%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ SG M H LLF G G GK T+ Sbjct: 13 RSFDEVVDL-----EEVKSRLREFVRSGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEFAR 93 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++++++D D M +A AL + +E Q FIL+++ I+ I+SR + Sbjct: 94 TAPIKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVM 153 Query: 184 IKFNSLSEN 192 ++FN L ++ Sbjct: 154 VRFNPLPKD 162 >gi|56808245|ref|ZP_00366016.1| COG0470: ATPase involved in DNA replication [Streptococcus pyogenes M49 591] gi|209558886|ref|YP_002285358.1| DNA polymerase III subunit delta' [Streptococcus pyogenes NZ131] gi|209540087|gb|ACI60663.1| DNA polymerase III delta prime subunit [Streptococcus pyogenes NZ131] Length = 291 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|294464282|gb|ADE77654.1| unknown [Picea sitchensis] Length = 354 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 20/203 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ D + R + +++ +S++ C LLF G G GK TL + P Sbjct: 10 RSLDKISVHREIAN-NLKNLVSEHDCP-----HLLFYGPSGAGKKTLIMALLKQIF-GPG 62 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-----LNPKTGKWRTVITVDEI-RR 117 K V P+ + + + L S LNP ++ V EI + Sbjct: 63 AEKVKVEN------KPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKE 116 Query: 118 IRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + N T ++V++++ VD +++ A ++L +++E IL + +L Sbjct: 117 MAKSRPIDVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEA 176 Query: 177 IRSRCLSIKFNSLSENNLYKALE 199 +RSRCL+I+ NS S+ + LE Sbjct: 177 VRSRCLNIRINSPSKEQIVDVLE 199 >gi|20089039|ref|NP_615114.1| replication factor C small subunit 2 [Methanosarcina acetivorans C2A] gi|19913896|gb|AAM03594.1| replication factor C subunit [Methanosarcina acetivorans C2A] Length = 344 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 20/269 (7%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + + G+E + LS+ SG + H L+F G + GK T A L + V Sbjct: 18 EGMLGNEHAVRTLSELLQSGTLPH-LIFYGPENSGKTTASLALA-RELYGETWKNNFVYF 75 Query: 72 CNPDPCSPFVKQMASHALHD--FLYLSYSLNPKTGKWRTVITV-DEIRRIRYFLSLTANT 128 D F Q + + D F+ + + +PK +++VI + E+ + + + + Sbjct: 76 NASD----FFDQGKRYLVRDKRFVRILGTDDPKK-IYKSVIDIFKEV--VNEYAGMASID 128 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I ID + ++ +A +AL + +E+ FIL + ++S +RSR L + F Sbjct: 129 ADYKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLISPLRSRGLQVFFAY 188 Query: 189 LSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 + ++ L LE++ K+ D D V A G+VARA++ L + S ++ Sbjct: 189 VPDSLLKTHLERIALAEKLKLSDGALDAVLYLAKGNVARAVQTLQLAA--LRSEGAEITE 246 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDF 273 E ++ + DELL + +A DF Sbjct: 247 EIVYEATMKGRDETIDELL--EAALAGDF 273 >gi|259502697|ref|ZP_05745599.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus antri DSM 16041] gi|259169342|gb|EEW53837.1| DNA-directed DNA polymerase III subunit delta' [Lactobacillus antri DSM 16041] Length = 343 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD IR ++ + +A G ++ +I + M +AAN+LLK +EEP ++++ Sbjct: 92 IKVDRIRYLKSEFTKSAMEGSQKLFIIQDAEKMTTSAANSLLKFIEEPGPGTYILMLTSN 151 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TI+SR ++ L +L + L Sbjct: 152 KSAVLPTIQSRTQVLEMAPLKRADLLRVL 180 >gi|221121120|ref|XP_002160048.1| PREDICTED: similar to Replication factor C subunit 2 [Hydra magnipapillata] Length = 349 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTSGAQQALRRTMELYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC +++ L++ L + L E+ K++ D + + A G + +A Sbjct: 171 QSDKIIEAIQSRCAVLRYTKLTDAQLLERLLDICEKEKVIKTDEGLEAIVFTAQGDMRQA 230 Query: 225 IKILH 229 I L Sbjct: 231 INNLQ 235 >gi|254389993|ref|ZP_05005215.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] gi|197703702|gb|EDY49514.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R + +++ +ID + NALLK +EEPP+ + FI + Sbjct: 12 VDDARELREKAFFGPASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPE 71 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 ++ TIRSR F + + L + L ++ KI D V A GSV ++ + Sbjct: 72 KVIGTIRSRTHHYPFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSV 131 Query: 228 LHYDCDKIISSYID 241 + D++++ D Sbjct: 132 M----DQLLAGATD 141 >gi|270292958|ref|ZP_06199169.1| DNA polymerase III, delta prime subunit [Streptococcus sp. M143] gi|270278937|gb|EFA24783.1| DNA polymerase III, delta prime subunit [Streptococcus sp. M143] Length = 296 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LEQ+ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEQMGLV 180 >gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1] gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG] Length = 336 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALL 151 + +Y+L RT+ + E ++++F + G +++++D VD M A AL Sbjct: 94 WRAYTLELNASDERTIDVIRE--KVKHFAKEKRDLPAGRHKIVILDEVDAMTEAAQQALR 151 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 + +E+ F L ++S +++ ++SRC ++F L ++ L + L Q+ M Sbjct: 152 RIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQLVRRLRQVCAM 204 >gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens] Length = 333 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 38/188 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G++D+ L G M + L+F G G GK T A H L P+F +A + + Sbjct: 30 IVGNQDVVARLQVIAQGGNMPN-LIFSGPPGTGKTTSILALA-HELLGPNFKEAVLELNA 87 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS--LTANTGY 130 D +D +R +I+ F +T G Sbjct: 88 SDDRG---------------------------------IDVVRNKIKMFAQKKVTLPPGR 114 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V+++D D M A AL +++E F L + S I+ I+SRC ++F+ LS Sbjct: 115 HKVVLLDEADSMTAGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLS 174 Query: 191 ENNLYKAL 198 ++ + L Sbjct: 175 DSEILDRL 182 >gi|314922555|gb|EFS86386.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL001PA1] Length = 627 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|152990882|ref|YP_001356604.1| DNA polymerase III, delta' subunit [Nitratiruptor sp. SB155-2] gi|151422743|dbj|BAF70247.1| DNA polymerase III, delta' subunit [Nitratiruptor sp. SB155-2] Length = 201 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 28/43 (65%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 A NALLK LEEPP+ V FILIS A T L TI SR +K S Sbjct: 71 AQNALLKVLEEPPKNVCFILISKAKSTFLPTILSRLPVVKEKS 113 >gi|50913703|ref|YP_059675.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS10394] gi|71902986|ref|YP_279789.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS6180] gi|306827928|ref|ZP_07461195.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus pyogenes ATCC 10782] gi|50902777|gb|AAT86492.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS10394] gi|71802081|gb|AAX71434.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS6180] gi|304429847|gb|EFM32889.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus pyogenes ATCC 10782] Length = 291 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHVNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] gi|150421641|sp|Q9YBS7|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 50/234 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ D + +Q+ + + L Q+ M H LLF G G GK T A H L Sbjct: 16 RSLDDIVDQK-----HVVERLKQFVKQRNMPH-LLFAGPPGTGKTT-----AAHAL---- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL- 122 +H L Y Y L R + + E +++ F Sbjct: 61 ----------------------AHDLFGENYRQYMLELNASDERGINVIRE--KVKEFAR 96 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T ++++++D D M +A AL + +E FILI++ I+ I+SRC Sbjct: 97 SRTPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCA 156 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA-------AYGSVARAIKILH 229 +F LS+ ++ +E+L+ + + D+ + A + G + +AI +L Sbjct: 157 FFRFQPLSKQDV---IERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQ 207 >gi|160946457|ref|ZP_02093666.1| hypothetical protein PEPMIC_00421 [Parvimonas micra ATCC 33270] gi|158447573|gb|EDP24568.1| hypothetical protein PEPMIC_00421 [Parvimonas micra ATCC 33270] Length = 268 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 R I++D IR + ++ G +++++I + ++NALLK+LEE V+ ++ Sbjct: 67 RNNISIDSIREMIKYVQKRPLEGKYKLVIIKGGQFLRAESSNALLKTLEESFDYVIICIL 126 Query: 167 SHASPTILSTIRSRCLSIKFNSLSEN 192 + +LSTIRSRC+ + + SEN Sbjct: 127 VDSRYKLLSTIRSRCIFVSEVNSSEN 152 >gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba] gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba] Length = 353 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ + F LI + I+ I SRC +F +L Sbjct: 135 FKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALG 194 Query: 191 ENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ + A+E +KI D+ + VKI+ G + RAI L Sbjct: 195 DDKVIDRLKYICAMEGVKIE-EDAYKSIVKISG-GDLRRAITTLQ 237 >gi|326429355|gb|EGD74925.1| replication factor C subunit 3 [Salpingoeca sp. ATCC 50818] Length = 353 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 137/352 (38%), Gaps = 75/352 (21%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT-----LGFRYAGHV----LQNPDFSKA 67 H+ I + L SG + H LLF G G GK T L Y +++ F Sbjct: 19 HDGITQQLKTLASSGDVPH-LLFYGPPGAGKKTRVQCFLRELYGASTDKLKIEHRSFKAT 77 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + + + +AS H +NP + +D+ +R L A+ Sbjct: 78 PSKTVD-------ISTIAS-GYH------IEINPSD------VGIDDYHVVRLLLKEIAS 117 Query: 128 TGY-------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V++I D + R A AL + +E+ ++LI ++S IL+ IRSR Sbjct: 118 SPQLDTSHHAFKVVVISEADRLTRKAQQALRRIMEKYVHNCRYVLIGNSSSKILAPIRSR 177 Query: 181 CLSIKFNSLSENNLYKAL------EQLKIM-GWDSK----------RDFVKIAAYGSVAR 223 CL ++ + S + L L E ++M G+ +K R + + A S +R Sbjct: 178 CLGLRVGAPSVDELSTVLIDVGKKEGCQVMPGFAAKVANASSRNLRRALLMLEATASQSR 237 Query: 224 AIKILHYDCDKIISSYIDLIHIPRQEYALQKM------QQIADELLSQDQKIAFDFLIEF 277 K++ D I +P E L++ QQ LL Q++ ++ L Sbjct: 238 GSKVMEATND---------IQLPDWEIFLRETAKRIISQQSPQRLLEVRQRL-YELLSHC 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 I ++ L G ++ Q+ ++ F R+ IFHL Sbjct: 288 IPPDVIIKRLTEELIGHID-----GQLKVDVIAYAADFEHRLTTGRKPIFHL 334 >gi|71892179|ref|YP_277911.1| DNA polymerase III, delta prime subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796285|gb|AAZ41036.1| DNA polymerase III, delta prime subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 333 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 25/178 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDF 64 D YNQ L + R HHALL ++ G+ TL + A ++ +PD Sbjct: 7 LDSTYNQILNAYR-----------QDRGHHALLLNSKRNNGENTLIYAIARWLICSHPDA 55 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 ++ CN C H D+ Y ++P+ I VD IR L Sbjct: 56 NQC----CNI--CYDCRLMNVGHH-PDY----YEISPENNT--QTIGVDTIRACINSLHK 102 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A ++I I+ V+ + A N LLK+L+EPP F + I T+ SRC+ Sbjct: 103 YAYQSKVKIIYIEYVECLTDQAVNVLLKTLDEPPTNTYFFFKTRDYMRISLTLLSRCM 160 >gi|259508098|ref|ZP_05750998.1| DNA polymerase III, gamma and tau subunits [Corynebacterium efficiens YS-314] gi|259164321|gb|EEW48875.1| DNA polymerase III, gamma and tau subunits [Corynebacterium efficiens YS-314] Length = 704 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD++R +R +RV +ID + NA+LK +EEPP+ ++FI + Sbjct: 24 VDDMRELREKAHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEPPEHLIFIFATTEPD 83 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQ 200 ++ TIRSR F L+ + LE+ Sbjct: 84 KVIGTIRSRTHHYPFRLLTPGAMRGLLER 112 >gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS] gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 315 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 36/228 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G+ DI K L + S + H LL G+ GIGK T + H L Sbjct: 13 YRPKLLDEIIGNVDIIKTLKSFRDSKQFPH-LLLCGQPGIGKTT-----SIHCL------ 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +H L Y L R + T+ + L Sbjct: 61 --------------------AHELLKDRYKDAVLELNASDERGIETIRSTIKSFCEKKLV 100 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++++D D M A AL +++E + F+L + I+ I+SRC + Sbjct: 101 LPDNLPKIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLT 160 Query: 186 FNSLSENNLYKALEQLK-IMGWDSKRDFVK---IAAYGSVARAIKILH 229 F L E L ++++ G D + D VK I + G + +AI L Sbjct: 161 FRPLGEEELMNRIKEIAHCEGVDIEDDAVKALEIVSEGDMRKAINALQ 208 >gi|67922680|ref|ZP_00516184.1| DNA polymerase III delta prime subunit [Crocosphaera watsonii WH 8501] gi|67855462|gb|EAM50717.1| DNA polymerase III delta prime subunit [Crocosphaera watsonii WH 8501] Length = 313 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 8/196 (4%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG---FRYAGHVLQNPDFSKAP 68 ++L G L Q R+ A LF G GIG+A LG F L + + Sbjct: 5 RQLIGQAAGVSLLQQAIAKNRIAPAYLFAGPPGIGRA-LGAKCFTELLLSLGLSEEKQVK 63 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV---ITVDEIRRIRYFLSLT 125 ++ + P + + LH L+ + G R + +++IR I FLS Sbjct: 64 LKKRVWERNHPDLYWVEPTYLHQGQLLTAKQAQENGLKRKAPPQVRIEQIRDITQFLSRP 123 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 V++I+ + M AAN LLK+LEE P K ILI+ + ++L T+ SRC I Sbjct: 124 PLEASRCVVVIEAAETMTEAAANGLLKTLEE-PGKATLILIAPSVDSLLPTLVSRCQRIP 182 Query: 186 FNSLSENNLYKALEQL 201 F L + ++ L +L Sbjct: 183 FYRLCDRDVKTILGRL 198 >gi|255645652|gb|ACU23320.1| unknown [Glycine max] Length = 354 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 45/75 (60%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++V++++ VD ++R A ++L +++E+ IL ++S + IRSRCL++ Sbjct: 125 TKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNV 184 Query: 185 KFNSLSENNLYKALE 199 + N+ SE + + LE Sbjct: 185 RINAPSEEQIVEVLE 199 >gi|256052294|ref|XP_002569709.1| replication factor C / DNA polymerase III gamma-tau subunit [Schistosoma mansoni] gi|227284417|emb|CAY16957.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Schistosoma mansoni] Length = 337 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++++++D D M ++A NAL + +E+ + F LI + I+ I+SRC +F Sbjct: 113 GKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAP 172 Query: 189 LSENNLYKALEQLKI-MGWDSKRDFVKIA---AYGSVARAIKILH 229 L+ N++ L ++ G D D VK A G + ++I +L Sbjct: 173 LAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQ 217 >gi|225166282|ref|ZP_03727977.1| DNA polymerase III gamma/tau subunits-like protein [Opitutaceae bacterium TAV2] gi|224799473|gb|EEG18007.1| DNA polymerase III gamma/tau subunits-like protein [Opitutaceae bacterium TAV2] Length = 336 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R+ H+LL G A++ + + +L P A R P SH D Sbjct: 29 RLSHSLLITGPDHELLASVAYTLSDRLLNPPTHPAAARR--------PIHADTGSHP--D 78 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 + L P GK R I + R + +++ +V +I D M+ +AAN L Sbjct: 79 L----FELRP-AGKMRQ-IGAEATRELIGKTQVSSTAAPCKVAIIHECDRMHVSAANIFL 132 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K+LEEPP +L++ +L TIRSRCL+ +F Sbjct: 133 KTLEEPPANTTLLLLTTRPYALLPTIRSRCLNFRF 167 >gi|88194241|ref|YP_499033.1| DNA polymerase III subunit delta' [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87201799|gb|ABD29609.1| DNA polymerase III, delta prime subunit, putative [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 279 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 A + +C D S +++++ DF+Y+S + N I +++ ++ ++ Sbjct: 9 AKLILCQTD--SQCETKVSTYNHPDFMYISTTEN--------AIKKEQVEQLVRHMNQLP 58 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +V +I+ + + N++LK LEEPP + IL+S IL TI SRC + F Sbjct: 59 IESTNKVYIIEDFEKLTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYF 118 Query: 187 ---------NSLSENNLYKALEQL 201 N L E N+ K + ++ Sbjct: 119 KPIDKEKFINRLVEQNMSKPVAEM 142 >gi|291296143|ref|YP_003507541.1| DNA polymerase III subunits gamma/tau [Meiothermus ruber DSM 1279] gi|290471102|gb|ADD28521.1| DNA polymerase III gamma/tau subunits [Meiothermus ruber DSM 1279] Length = 292 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 26/187 (13%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + GH+ I + L + LF G +G+G+ + + + N + P C Sbjct: 3 ILGHQRILELLPKIKA-----QTFLFTGPEGVGRRLVARWFTAGL--NCEVGFPPCGNCA 55 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW-- 131 C ++ +H D+L ++ KTG+ + + + +I S N W Sbjct: 56 S--C-----RLEAHP--DYLEIAPEHETKTGR-KARLPQIRLEQIAPRESEEPNLLDWIT 105 Query: 132 -------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +V ++D + AANALLK LEEPP ILI+ + +L T+ SR L + Sbjct: 106 TYPRFKTKVAVVDGAHFLGEAAANALLKVLEEPPSFARIILIAPSRELVLPTLVSRSLEV 165 Query: 185 KFNSLSE 191 F + E Sbjct: 166 GFAPVPE 172 >gi|139474334|ref|YP_001129050.1| DNA polymerase III subunit delta' [Streptococcus pyogenes str. Manfredo] gi|134272581|emb|CAM30848.1| putative DNA polymerase III, delta' subunit [Streptococcus pyogenes str. Manfredo] Length = 291 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEP + L+++ +L TI+SR +F +E LY+ ++ ++ +K Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQFPK-NEAYLYQLAQEKGLLNHQAK 182 >gi|73957665|ref|XP_546916.2| PREDICTED: similar to replication factor C 2 (40kD) isoform 1 [Canis familiaris] Length = 352 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ LS+ L LEQ K+ D + V A G + +A Sbjct: 171 ASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQA 230 Query: 225 I 225 + Sbjct: 231 L 231 >gi|21227528|ref|NP_633450.1| replication factor C small subunit 2 [Methanosarcina mazei Go1] gi|20905906|gb|AAM31122.1| replication factor C subunit [Methanosarcina mazei Go1] Length = 341 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 16/236 (6%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 +RL G+E K LS+ S + H L+F G + GK T A + D K Sbjct: 15 ERLLGNEHAVKTLSELVQSRTLPH-LIFYGPENSGKTTAALALARQLY--GDTWKNNFAY 71 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSY--SLNPKTGKWRTVITV-DEIRRIRYFLSLTANT 128 N S F Q + + D ++ + + +PK +++VI + EI I + + Sbjct: 72 FN---ASDFFNQGKRYLVRDRRFVRFIGTDDPKK-IYKSVIDIFKEI--INEYAGMAPLD 125 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I ID + ++ +A +AL + +E+ FIL + ++S +RSR L + F Sbjct: 126 ADYKLIYIDNAESLSSDAQHALRRIMEKYSATCRFILSTTRPSKLISPLRSRGLQVFFAY 185 Query: 189 LSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 +S++ + LE++ + D D + + G++ARA++ L K S+ I Sbjct: 186 VSDSLVKPHLERIALSEDLELSDGALDAILYLSKGNIARAVQTLQLAALKAESAEI 241 >gi|322386923|ref|ZP_08060547.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus cristatus ATCC 51100] gi|321269205|gb|EFX52141.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus cristatus ATCC 51100] Length = 300 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + IR + S + G +V +I D M+ NAAN+LLK +EEP ++ L++ Sbjct: 86 IIKTERIRELVRNFSQSGMEGNRQVFIICDADKMHVNAANSLLKVIEEPQSEIYIFLLTA 145 Query: 169 ASPTILSTIRSR 180 IL TI+SR Sbjct: 146 DEHLILPTIKSR 157 >gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1 [Ailuropoda melanoleuca] Length = 352 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ LS+ L LEQ K+ D + V A G + +A Sbjct: 171 ASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQA 230 Query: 225 I 225 + Sbjct: 231 L 231 >gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca] Length = 318 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 12 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 63 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 64 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 97 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 98 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 157 Query: 192 NNLYKALEQL----KI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + K+ + D + V +A+ G + RA+ IL + ++ Sbjct: 158 ELMVPRLEHVIKEEKVDLSEDGMKALVTLAS-GDMRRALNILQSTNMAFGKVTEETVYTC 216 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ + E K+ K AL L E + ++ Sbjct: 217 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTETHLFVHRVD 270 Query: 306 FSLVKRVHAFS 316 F RVH + Sbjct: 271 FPSSVRVHLLT 281 >gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda melanoleuca] Length = 340 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/311 (20%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F + + Sbjct: 34 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGSMVLELNA 92 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 D +D +R + + + T + Sbjct: 93 SDDRG---------------------------------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 NNLYKALEQL----KI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + K+ + D + V +A+ G + RA+ IL + ++ Sbjct: 180 ELMVPRLEHVIKEEKVDLSEDGMKALVTLAS-GDMRRALNILQSTNMAFGKVTEETVYTC 238 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ + E K+ K AL L E + ++ Sbjct: 239 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTETHLFVHRVD 292 Query: 306 FSLVKRVHAFS 316 F RVH + Sbjct: 293 FPSSVRVHLLT 303 >gi|228904104|ref|ZP_04068199.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] gi|228931031|ref|ZP_04093987.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828652|gb|EEM74332.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855189|gb|EEM99753.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] Length = 409 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 31/178 (17%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNP 74 G+ED++K + + + A+L +G G GK ++ A L ++ D K C Sbjct: 6 GNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYLCEDRDEEKGACGEC-- 63 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT------ 128 + + D++ +TG ++ + EI + N+ Sbjct: 64 ---------YSCKMMDDYI--------ETGNTDGLMGLREINASKDSGLTAINSLLEEAQ 106 Query: 129 -----GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G W++ ++D ++ A N+LLK +EEPP+ VLF+ + +L T+ +RC Sbjct: 107 YPNPDGSWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTTDPDKMLDTLLNRC 164 >gi|226357211|ref|YP_002786951.1| DNA polymerase III subunit [Deinococcus deserti VCD115] gi|226319201|gb|ACO47197.1| putative DNA-directed DNA polymerase (DNA polymerase III, delta prime subunit) [Deinococcus deserti VCD115] Length = 318 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%) Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKW--RTVITVDEIRRIR-----------YFLSLT 125 P + +A+ A D L + TGK R +I + + R FL + Sbjct: 68 PSCRALAAGAHPDLLLIEPRATTTTGKVARRKLIPIGAVLEARDKGGEYDVHVFEFLEVR 127 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 T RV++++ + + + AANALLK +EEPP LF+ ++ ++L TI SR + Sbjct: 128 -PTHRRRVVIVNGAEYLGQEAANALLKLIEEPPHGALFVFLAEDLRSVLPTIVSRSARLN 186 Query: 186 FNSLSENNLYKAL 198 ++ + AL Sbjct: 187 VTPATDRAMEFAL 199 >gi|182415141|ref|YP_001820207.1| DNA polymerase III gamma/tau subunits-like protein [Opitutus terrae PB90-1] gi|177842355|gb|ACB76607.1| DNA polymerase III gamma/tau subunits-like protein [Opitutus terrae PB90-1] Length = 320 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 R+ PDP A H + ++L P GK R I+ + R + + ++A Sbjct: 52 RLLTPDPTG-----SAHHFPPEQHPDCHALRP-AGKMRQ-ISAEATRNLISQVQVSATVS 104 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +V +I D MN AAN LK+LEEPP +L++ +L TIRSR L +F S Sbjct: 105 KRKVAIIHEADRMNVPAANVFLKTLEEPPANTTLLLLTTRPYALLPTIRSRVLHFRFPSA 164 Query: 190 S 190 + Sbjct: 165 T 165 >gi|253755792|ref|YP_003028932.1| DNA polymerase III, delta' subunit [Streptococcus suis BM407] gi|251818256|emb|CAZ56064.1| putative DNA polymerase III, delta' subunit [Streptococcus suis BM407] Length = 294 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VI D IR + S + +V +I + M+ NAAN+LLK +EEP + L++ Sbjct: 85 NVIKTDTIRELVKNFSQSGFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF 186 + +L TI+SR I F Sbjct: 145 NQEEAVLPTIKSRTQIIGF 163 >gi|11992993|gb|AAF98347.2| DNA polymerase III delta prime subunit [Streptococcus pyogenes] Length = 290 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 K +EEP + L+++ +L TI+SR +F +E LY+ ++ ++ +K Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQFPK-NEAYLYQLAQEKGLLNHQAK 182 >gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius] Length = 335 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 36/190 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + A + ++ +F+ Sbjct: 28 LISHKDILSTIQKFISEDRLPH-LLFYGPPGTGKISTILACAKQLYKDKEFNA------- 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 80 -------------------MVLELNASDDRG-------IDVVRGPILSFASTRTIFKKGF 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M R+A NAL + +E+ + F LI + I+ ++SRC +F LS+ Sbjct: 114 KLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQ 173 Query: 192 NNLYKALEQL 201 + + LE + Sbjct: 174 DQMIPRLEHV 183 >gi|15674540|ref|NP_268714.1| DNA polymerase III subunit delta' [Streptococcus pyogenes M1 GAS] gi|13621645|gb|AAK33435.1| putative DNA polymerase III delta' subunit [Streptococcus pyogenes M1 GAS] Length = 291 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + + P C C ++Q D Sbjct: 22 RLNHAYLFSGD--FANEEMALFLAKVIFCEQKKDQTPCGHCRS--CQ-LIEQ------GD 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F ++ L P TG+ VI D ++ + S T +V +I D M+ NAAN+LL Sbjct: 71 FADVTV-LEP-TGQ---VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 K +EEP + L+++ +L TI+SR +F Sbjct: 126 KYIEEPQGEAYIFLLTNDDNKVLPTIKSRTQVFQF 160 >gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5] gi|150415673|sp|A1RWU7|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5] Length = 325 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ D + +Q E+I K L ++ + M H LLF G G GK T A Sbjct: 13 RSLDEIVDQ-----EEIVKRLKEFVKNKNMPH-LLFAGPPGTGKTTAALALA-------- 58 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIR-YF 121 HD S+ N +D IR RI+ Y Sbjct: 59 --------------------------HDLYGESWRDNTLELNASDERGIDVIRSRIKDYA 92 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L ++++++D D M +A AL +++E + FILI++ + I+ I+SRC Sbjct: 93 RTLPIGDVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRC 152 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F L + + ++ L +Q I D + + + G + +AI L Sbjct: 153 AVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQ 204 >gi|222478820|ref|YP_002565057.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239] gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239] Length = 327 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 44/223 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I + L Y + H LLF G G GK T A V + ++ Sbjct: 30 IHGQEAIVERLQSYIEQDDIPH-LLFGGPAGTGKTTAATAIARQVYGDDNWRG------- 81 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 +FL L+ S + G +D +R RI+ F + ++ G +R Sbjct: 82 -----------------NFLELNAS--DQRG-------IDVVRDRIKGF-ARSSFGGDFR 114 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 ++ +D D + A AL +++E+ FIL + S I+ I+SRC +F+ LS+ Sbjct: 115 IVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDA 174 Query: 193 NLY------KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + A E +++ D D + AA G + RAI L Sbjct: 175 AVAAQTREIAAAEGIEVT--DEGVDALVYAADGDMRRAINSLQ 215 >gi|146320509|ref|YP_001200220.1| DNA polymerase III subunit delta' [Streptococcus suis 98HAH33] gi|253751478|ref|YP_003024619.1| putative DNA polymerase III, delta' subunit [Streptococcus suis SC84] gi|253753379|ref|YP_003026520.1| DNA polymerase III, delta' subunit [Streptococcus suis P1/7] gi|145691315|gb|ABP91820.1| ATPase involved in DNA replication [Streptococcus suis 98HAH33] gi|251815767|emb|CAZ51369.1| putative DNA polymerase III, delta' subunit [Streptococcus suis SC84] gi|251819625|emb|CAR45365.1| putative DNA polymerase III, delta' subunit [Streptococcus suis P1/7] gi|292558110|gb|ADE31111.1| putative DNA polymerase III, delta subunit [Streptococcus suis GZ1] gi|319757896|gb|ADV69838.1| DNA polymerase III subunit delta' [Streptococcus suis JS14] Length = 294 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VI D IR + S + +V +I + M+ NAAN+LLK +EEP + L++ Sbjct: 85 NVIKTDTIRELVKNFSQSGFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF 186 + +L TI+SR I F Sbjct: 145 NQEEAVLPTIKSRTQIIGF 163 >gi|329769792|ref|ZP_08261193.1| hypothetical protein HMPREF0433_00957 [Gemella sanguinis M325] gi|328838154|gb|EGF87772.1| hypothetical protein HMPREF0433_00957 [Gemella sanguinis M325] Length = 279 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%) Query: 107 RTVITVDEIRRIRYFLSLTANTG---YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 T I +EI+ ++ LS+ + G YW I ++ M A+N+LLK LEEP ++ Sbjct: 83 ETSIKKEEIQNLKSELSVKSFYGRKIYW----IKDIEKMTEQASNSLLKFLEEPEDDIIA 138 Query: 164 ILISHASPTILSTIRSRCLSIKF 186 IL IL TI SRC +K Sbjct: 139 ILSCKNISAILPTIISRCQQVKL 161 >gi|319939587|ref|ZP_08013946.1| DNA-directed DNA polymerase subunit III [Streptococcus anginosus 1_2_62CV] gi|319811176|gb|EFW07482.1| DNA-directed DNA polymerase subunit III [Streptococcus anginosus 1_2_62CV] Length = 297 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 23/177 (12%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYW---RVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 R + + + R+R + + +G+ +V +I D M+ NAAN+LLK +EEP +V Sbjct: 81 RPINNIIKTERVRELVRNFSQSGFESNKQVFIICDADKMHVNAANSLLKVIEEPQSEVYI 140 Query: 164 ILISHASPTILSTIRSRCLSIKF--------NSLSENNLYKALEQLKIMGWDSKRDFVKI 215 L++ IL TI+SR F L + L K +L ++ + +++ Sbjct: 141 FLLTADENLILPTIKSRAQLFHFPKNQAYLLEKLEQTGLIKTQAELLTAYSQTEEEAMRL 200 Query: 216 AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA---LQKMQQIADELLSQDQKI 269 AA + A L +CD S + + R+E A + K+ +AD+ Q+Q + Sbjct: 201 AA----SPAFFDLAAECDCFAS-----LCLNRKETAYLQVAKLASLADDKEKQEQAL 248 >gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae] Length = 353 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 25/188 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE + K L+++ + + H LLF G G GK T A Sbjct: 17 YRPSKLNELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAAR--------- 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +M +P S V ++ + D + N T++ + + ++ F S + Sbjct: 67 ----KMYHPSKMSSMVLELNAS---DERGIDVVRN-------TIVNFAQTKGLQAFASAS 112 Query: 126 -ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++ ++++++D D M ++A NAL + +E+ V F +I + +I+ I+SRC Sbjct: 113 DKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRF 172 Query: 185 KFNSLSEN 192 +F L ++ Sbjct: 173 RFAPLDQS 180 >gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba] gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba] Length = 332 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 38/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +Q S L L+ S + G R I + + + T +++ Sbjct: 66 RQLYSP--QQFKSMVLE----LNASDDRGIGIVRGQI-------LNFASTRTIFCDTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS+N Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQ 172 Query: 194 LYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + LE++ + D KR + +A G + + + +L Sbjct: 173 MMPRLEKIIEAEAVQITDDGKRALLTLAK-GDMRKVLNVLQ 212 >gi|322388015|ref|ZP_08061622.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus infantis ATCC 700779] gi|321141288|gb|EFX36786.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus infantis ATCC 700779] Length = 294 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + IR + S + +V +I+ + M+ NAAN+LLK +EEP + +++ Sbjct: 86 IIKTERIRELVGQFSQSGIENQRQVFIIEQAEKMHANAANSLLKVIEEPQSETYIFFLTN 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 +L TIRSR +F E +L LEQ Sbjct: 146 DQEQMLPTIRSRTQIFQFKKQVE-SLRNQLEQ 176 >gi|190360157|sp|P0C7N7|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication factor C2 Length = 411 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 22/234 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + ++ + LS+ S + H +LF G G GK + A L P+ Sbjct: 39 YRPKTLSEVTAQDNTIQILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQ-LYGPELM 96 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD----EIRRIRYF 121 K+ V N + + DF S+ P V+T D E + +RY Sbjct: 97 KSRVLELNASDERGI--SIVRQKVKDFARQQLSVAPTY----NVMTEDKDGGEAKMVRYR 150 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++I++D D M ++A +AL +++E + F L+ + I+ + SRC Sbjct: 151 DKYSCPP--FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 208 Query: 182 LSIKFNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F SL + N + LE +K+ S+ + V++A G + +AI L Sbjct: 209 SKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSE-ELVRVAD-GDLRKAITFLQ 260 >gi|146329436|ref|YP_001210097.1| DNA polymerase III, delta' subunit [Dichelobacter nodosus VCS1703A] gi|146232906|gb|ABQ13884.1| DNA polymerase III, delta' subunit [Dichelobacter nodosus VCS1703A] Length = 316 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I ++EIR + ++T RV+ + +D + A N LLK+LEEP LFIL + Sbjct: 81 IKIEEIRALITKTTMTPALSARRVVFLGQIDDYSEEALNTLLKTLEEPSPHSLFILSARN 140 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK 209 + +TI SR I SL + AL L+ G+ K Sbjct: 141 RHAVKATIISRAHCI---SLVKPRFEDALAWLQEQGFSEK 177 >gi|269217441|ref|ZP_06161295.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral taxon 848 str. F0332] gi|269213062|gb|EEZ79402.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral taxon 848 str. F0332] Length = 401 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 21/231 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E + + + + R HA LF G +G GK T R L + Sbjct: 5 RRYRPQTFQEVIGQEHVTRPIMAALRADRTAHAYLFSGPRGCGKTT-SARILARCL---N 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++AP PC + L SL+ + VD+ R + + Sbjct: 61 CAEAPTDT----PCG-----VCESCRELSLGGGGSLDVVEMDAASHGGVDDARELIERAA 111 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID ++ NALLK +EEPP V F+ + ++ TIRSR Sbjct: 112 FAPARDRYKIFIIDEAHMVSNQGFNALLKLVEEPPPHVKFVFATTEPEKVIGTIRSRTHH 171 Query: 184 IKFNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 F + L A E +++ G V A GSV ++ +L Sbjct: 172 YPFRLVPPETLENYMAGICAEEGIEVGGG--VLPLVVRAGAGSVRDSLSVL 220 >gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster] gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster] gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster] Length = 353 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ + F LI + I+ I SRC +F +L Sbjct: 135 FKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALG 194 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E+ + L E +KI D+ + VKI+ G + RAI L Sbjct: 195 EDKVIDRLKYICEMEGVKIED-DAYKSIVKISG-GDLRRAITTLQ 237 >gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] Length = 320 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 42/188 (22%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ SG M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKSRLREFVKSGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I+SR Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRV 152 Query: 182 LSIKFNSL 189 + I+FN L Sbjct: 153 VMIRFNPL 160 >gi|296436626|gb|ADH18796.1| DNA polymerase III subunit delta' [Chlamydia trachomatis G/11222] Length = 290 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 T++ R IR + + +++ +I D + +A +A LK LE+PPQ +FIL+S Sbjct: 76 TIETPRAIRKDIWIHPYESPYKIYIIYEADRITLDAISAFLKLLEDPPQYGMFILVSALP 135 Query: 171 PTILSTIRSRCLSIKF 186 + TIRSRC+S + Sbjct: 136 QRLPPTIRSRCVSFRI 151 >gi|222152171|ref|YP_002561331.1| hypothetical protein MCCL_1928 [Macrococcus caseolyticus JCSC5402] gi|222121300|dbj|BAH18635.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 306 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 26/160 (16%) Query: 24 LSQYYCSGRMHHALLFEG--EQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 L Q + ++ HA LFEG +Q + + + F A +C D Sbjct: 4 LMQAIKNNKLSHAYLFEGSNKQALKEEAIIF--------------ASAIICGDDEVCH-- 47 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 ++A+H DF + I + I + ++ G ++V +I D Sbjct: 48 TRIAAHNHSDFFIMETD--------EATIKKEMIEEALHKMNQKPIEGSYKVYIIVDFDK 99 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N++LK LEEPP + +L++ A IL TI SRC Sbjct: 100 VTTQGENSILKFLEEPPGNTIALLLTSAPNEILPTIHSRC 139 >gi|94991848|ref|YP_599947.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS2096] gi|94545356|gb|ABF35403.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS2096] Length = 291 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI D ++ + S T +V +I D M+ NAAN+LLK +EEP + L+++ Sbjct: 83 VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLLKYIEEPQGEAYIFLLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DDNKVLPTIKSRTQVFQF 160 >gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2] gi|50400879|sp|Q6M044|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2] Length = 315 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 40/261 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH +I K L+ Y M H LLF G G+GK T A + Sbjct: 9 YRPETLSEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDL------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 61 ------------------YGDTWRENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ FIL + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---DKIISS 238 F+ L +L + L E+ + D + + G + +AI +L D+I Sbjct: 156 FSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEE 215 Query: 239 YIDLIHIPRQEYALQKMQQIA 259 + + + ++KM Q+A Sbjct: 216 IVYKVASKARPDEIKKMTQLA 236 >gi|296118104|ref|ZP_06836686.1| DNA polymerase III, delta' subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968990|gb|EFG82233.1| DNA polymerase III, delta' subunit [Corynebacterium ammoniagenes DSM 20306] Length = 415 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS- 167 I V+E+R + + +RVI+ D D + A+NALLK++EEP + + I+ + Sbjct: 114 TIKVEEVRGVIKDAIALPTSAKYRVIIFDNADRLTAGASNALLKTVEEPSAQTIIIMCAP 173 Query: 168 HASPTILS-TIRSRC 181 A P S T+RSRC Sbjct: 174 SADPQDFSQTLRSRC 188 >gi|289808157|ref|ZP_06538786.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 66 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 2 AANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 37 >gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae] gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae] Length = 362 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 119 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 178 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC ++++ L++N + + L E+ + D + V A G + +A Sbjct: 179 ASDKIIEAIQSRCAVLRYSKLTDNQILERLLYVCEKENVEHTDDGLEAVIFTAQGDMRQA 238 Query: 225 IKILH 229 + L Sbjct: 239 LNNLQ 243 >gi|94987964|ref|YP_596065.1| DNA polymerase III subunit delta' [Streptococcus pyogenes MGAS9429] gi|94541472|gb|ABF31521.1| DNA polymerase III, delta' subunit [Streptococcus pyogenes MGAS9429] Length = 291 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI D ++ + S T +V +I D M+ NAAN+LLK +EEP + L+++ Sbjct: 83 VIKTDVVKEMMANFSQTGYENKRQVFIIKDCDKMHINAANSLLKYIEEPQGEAYIFLLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DDNKVLPTIKSRTQVFQF 160 >gi|322376439|ref|ZP_08050932.1| DNA polymerase III, delta prime subunit [Streptococcus sp. M334] gi|321282246|gb|EFX59253.1| DNA polymerase III, delta prime subunit [Streptococcus sp. M334] Length = 296 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIENQQQVFIIEQAEKMHPNAANSLLKVIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSR 180 IL TIRSR Sbjct: 146 DEEKILPTIRSR 157 >gi|294781848|ref|ZP_06747180.1| ATPase and helicase [Fusobacterium sp. 1_1_41FAA] gi|294481659|gb|EFG29428.1| ATPase and helicase [Fusobacterium sp. 1_1_41FAA] Length = 289 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 18/185 (9%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 72 LNIDTVRDIIKKTYTSSHEGGAKVFILKNIQDIRKESANAMLKIIEEPTRDNFFILISK- 130 Query: 170 SPTILSTIRSRCLSIKFNSLSEN---------NLYKALEQLKIMGWDSKRDFVKIAAYGS 220 ILSTI+SR + + + N + + + + D + +Y S Sbjct: 131 RLNILSTIKSRSIIYRVRKSTPEELGVDKYVYNFFLGISNDIAEYKEQEIDLMLEKSYKS 190 Query: 221 VARAIKILHYDCDKIISSYIDLIHIPR----QEYALQKMQQI--ADELLSQDQKIAFDFL 274 VA +K Y+ +K I IDL R + +L+K ++I A+++ S K + + + Sbjct: 191 VAGVLK--EYEKEKKIVVKIDLYKCLRNFVQESTSLKKYEKIKFAEDIYSNASKESINLI 248 Query: 275 IEFIL 279 +++I+ Sbjct: 249 VDYII 253 >gi|124485741|ref|YP_001030357.1| replication factor C small subunit 2 [Methanocorpusculum labreanum Z] gi|124363282|gb|ABN07090.1| DNA polymerase III gamma/tau subunits-like protein [Methanocorpusculum labreanum Z] Length = 332 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 22/228 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G K LS Y G + H LL G G GK++ A V ++ Sbjct: 7 YRPTSFEEVIGQNSPVKQLSAYAALGNLPH-LLVIGRSGCGKSS-----ALEVFSRRFYT 60 Query: 66 KAPVRMCNPDPCSPFVKQMASH-ALHD-FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 ++ P S Q ++ A +D F +L ++ ++ R+ S Sbjct: 61 ESAAENTTVLPVSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIV--------RWHAS 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L + +R+I+ D + ++A AL + +E+ Q FI ++ + +I+ IRSRC+ Sbjct: 113 LKPLSAPFRLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVP 172 Query: 184 IKFNSLSENN----LYKALEQLKIMGWDSKR--DFVKIAAYGSVARAI 225 + F + E L LEQ +G S+ D + + + G + +A+ Sbjct: 173 LYFLPIDEATMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKAL 220 >gi|323175670|gb|EFZ61264.1| DNA polymerase III subunit delta' [Escherichia coli 1180] Length = 300 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 Y+L P+ GK ++ +D +R + L+ A G +V+ + + AANALLK+LEE Sbjct: 43 YTLAPEKGK--NMLGIDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE 100 Query: 157 PPQKVLFILISHASPTILSTIRSRC 181 PP + F L + +L+T+RSRC Sbjct: 101 PPAETWFFLATREPERLLATLRSRC 125 >gi|295395500|ref|ZP_06805695.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri ATCC 49030] gi|294971671|gb|EFG47551.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri ATCC 49030] Length = 894 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 19/191 (9%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G + + L +GR++HA LF G +G GK T R L Q P + P Sbjct: 17 VIGQDHVTGPLKAALDNGRVNHAYLFSGPRGCGK-TTSARILARCLNCEQGP--TSTPCG 73 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C + +A+ + G VD+ R +R Sbjct: 74 QCA------SCRDLATGGPGSLDVVEIDAASHNG-------VDDARDLRERAVYAPARDR 120 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V ++D + NALLK +EEPP V F+ + ++ TIRSR F + Sbjct: 121 FKVFILDEAHMVTPQGFNALLKLVEEPPPHVKFVFATTEPEKVIGTIRSRTHHYPFRLVP 180 Query: 191 ENNLYKALEQL 201 + L L +L Sbjct: 181 PDILTAYLTEL 191 >gi|291001551|ref|XP_002683342.1| predicted protein [Naegleria gruberi] gi|284096971|gb|EFC50598.1| predicted protein [Naegleria gruberi] Length = 356 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 9/198 (4%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P+ +++ H+++ + L SG H LL G G GK T + + N K Sbjct: 10 PMSLEKMQIHKEVSEQLMNITKSGDFPH-LLIHGPSGAGKKT-RIQALLREIYNNKIDKV 67 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY-----FL 122 + + S K + AL +L + + +G + + + I+ + FL Sbjct: 68 KLENKDVSVGSDGSKTITVTALSSGYHLEITPS-DSGYYDKYVVANMIKEVAETDSVDFL 126 Query: 123 SL-TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S ++ + + +VI++ VD + R A AL + +E+ + IL ++++ I+ IRSRC Sbjct: 127 STGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIPPIRSRC 186 Query: 182 LSIKFNSLSENNLYKALE 199 ++++ + S+ + L+ Sbjct: 187 MAVRIPAPSDEEISTVLQ 204 >gi|198283697|ref|YP_002220018.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666094|ref|YP_002426326.1| DNA polymerase III, delta prime subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248218|gb|ACH83811.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518307|gb|ACK78893.1| DNA polymerase III, delta prime subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 333 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 + P+TGK IT++ +R FL+ T R + I P + M AANALLK+LEEP Sbjct: 79 ITPETGK---RITIEAVRHANEFLAFTPQVSACRWLRIAPAEAMTAAAANALLKTLEEPA 135 Query: 159 QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS---KRDFVKI 215 + +L+S ++ TIRSR + F ++ LE L I ++ R F Sbjct: 136 ARAHILLLSEHPSQLIPTIRSRLQRLPFPTMLPGQCVNWLEGLGIPPAEALSLSRQFAN- 194 Query: 216 AAYGSVARAIKILHYDCDKIISSYID-LIHIPRQ 248 RA ++ + ++I+ L+++PRQ Sbjct: 195 ----RPLRAWQLWESGWVTLRRTWIETLLNLPRQ 224 >gi|15604907|ref|NP_219691.1| DNA polymerase III subunit delta' [Chlamydia trachomatis D/UW-3/CX] gi|76788909|ref|YP_327995.1| DNA polymerase III subunit delta' [Chlamydia trachomatis A/HAR-13] gi|237802611|ref|YP_002887805.1| DNA polymerase III subunit delta' [Chlamydia trachomatis B/Jali20/OT] gi|237804533|ref|YP_002888687.1| DNA polymerase III subunit delta' [Chlamydia trachomatis B/TZ1A828/OT] gi|255310987|ref|ZP_05353557.1| DNA polymerase III subunit delta' [Chlamydia trachomatis 6276] gi|255317288|ref|ZP_05358534.1| DNA polymerase III subunit delta' [Chlamydia trachomatis 6276s] gi|3328592|gb|AAC67779.1| DNA Pol III Gamma and Tau [Chlamydia trachomatis D/UW-3/CX] gi|76167439|gb|AAX50447.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A/HAR-13] gi|231272833|emb|CAX09742.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis B/TZ1A828/OT] gi|231273845|emb|CAX10635.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis B/Jali20/OT] gi|296435702|gb|ADH17876.1| DNA polymerase III subunit delta' [Chlamydia trachomatis G/9768] gi|296437562|gb|ADH19723.1| DNA polymerase III subunit delta' [Chlamydia trachomatis G/11074] gi|297140061|gb|ADH96819.1| DNA polymerase III subunit delta' [Chlamydia trachomatis G/9301] gi|297748317|gb|ADI50863.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC] gi|297749197|gb|ADI51875.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC] Length = 290 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 T++ R IR + + +++ +I D + +A +A LK LE+PPQ +FIL+S Sbjct: 76 TIETPRAIRKDIWIHPYESPYKIYIIYEADRITLDAISAFLKLLEDPPQYGMFILVSALP 135 Query: 171 PTILSTIRSRCLSIKF 186 + TIRSRC+S + Sbjct: 136 QRLPPTIRSRCVSFRI 151 >gi|154499205|ref|ZP_02037583.1| hypothetical protein BACCAP_03200 [Bacteroides capillosus ATCC 29799] gi|150272045|gb|EDM99271.1| hypothetical protein BACCAP_03200 [Bacteroides capillosus ATCC 29799] Length = 381 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 22/191 (11%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + GH+++ +FL + G + ++FEG++G+GK++ A Sbjct: 5 PTSFDDIVGHKNLIEFLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLA------------ 52 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 + + DP +K++ L Y+++ GK D + + LSL + Sbjct: 53 -LELMGRDP--QVLKRVIQENKSTESVLLYNMSINGGK-------DTAKEVEANLSLGLS 102 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +VI++D M+ A L S E P+ V + + S + +T++SR ++ Sbjct: 103 GLDRKVIILDEAHDMSEAAQETFLVSTEYLPKGVYLFMCTTDSLNLKATLKSRAFTLHLQ 162 Query: 188 SLSENNLYKAL 198 L++ ++ L Sbjct: 163 HLTQADMVSLL 173 >gi|302338222|ref|YP_003803428.1| DNA polymerase III gamma/tau subunits [Spirochaeta smaragdinae DSM 11293] gi|301635407|gb|ADK80834.1| DNA polymerase III gamma/tau subunits [Spirochaeta smaragdinae DSM 11293] Length = 405 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I +D+IR I Y+ + + + ++++ V+ M ++ NALLK LEEPP+ IL++ Sbjct: 181 IPIDQIRNITYWCR-SLGGKHPKFVLLEGVENMVDSSRNALLKLLEEPPENCYLILLTSR 239 Query: 170 SPTILSTIRSRCLSIKFN 187 I+ TI SR F+ Sbjct: 240 KGGIIQTILSRVRQYSFS 257 >gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter ruminantium M1] gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter ruminantium M1] Length = 314 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 34/173 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + I + L +Y G M + L+F G G+GK T +L Sbjct: 17 IVGQKHIVESLKKYVDQGSMPN-LMFTGPAGVGKTTSALALVKAIL-------------- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + +FL L+ S R + TV I+ F L +R+ Sbjct: 62 -----------GDYWRQNFLELNAS------DARGIETVRT--NIKNFCRLKPVGAPFRI 102 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 I +D VD M ++A +AL + +E + FIL + S I+ I+SRC +F Sbjct: 103 IFLDEVDNMTKDAQHALRREMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRF 155 >gi|167533047|ref|XP_001748204.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773324|gb|EDQ86965.1| predicted protein [Monosiga brevicollis MX1] Length = 355 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 23/191 (12%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV--RMCNP 74 H ++ + L SG + H +LF G G GK T + L P + + ++ P Sbjct: 20 HANLSQHLKMLSASGDVPH-MLFHGPSGAGKKTRCMAFLRE-LYGPSADRLKIDHQVIKP 77 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY---- 130 P S H +NP + +D+ +R L A T Sbjct: 78 TPSKTVEISTLSSNFH------IEINPSD------VGIDDYHVVRMILKEIARTPLVDTS 125 Query: 131 ---WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 ++ ++I D + R + AL + +E +ILI ++S IL+ IRSRCL ++ Sbjct: 126 KHPFKTVVIVEADRLTRKSQQALRRIMESYVSNCRYILICNSSTKILAPIRSRCLQMRVG 185 Query: 188 SLSENNLYKAL 198 + + + + L Sbjct: 186 APTMSEMCAVL 196 >gi|116326855|ref|YP_796575.1| DNA polymerase III gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116119599|gb|ABJ77642.1| DNA polymerase III gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 312 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 78/194 (40%), Gaps = 28/194 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALL-FEGEQGIGKATLGFRYAGHVLQNPDFS------- 65 + G E FL +Y LL F G G GK + R+ +VL S Sbjct: 11 ILGQEVALTFLKRYTSKPETIPPLLIFHGPDGTGKESTSERFIKNVLCFEGTSCGTCASC 70 Query: 66 KAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLNPK--TGKWRTVITVDEIRRIRYFL 122 KA +R +PD C P + + NP+ T +W IR L Sbjct: 71 KAFMRNSHPDYICFP-------EDRGKIIAIGSEDNPEEFTIRW----------LIRSRL 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + +R I+ + A ALLKSLEE P FI I + T+ TI SR + Sbjct: 114 NYRPHLSKFRFIVFPDASLIGNEAETALLKSLEEAPSFSKFIFIVNNIDTLKETIISRAI 173 Query: 183 SIKFNSLSENNLYK 196 + F L++N+L K Sbjct: 174 CVPFQYLNQNDLKK 187 >gi|307596342|ref|YP_003902659.1| Replication factor C [Vulcanisaeta distributa DSM 14429] gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429] Length = 342 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 37/190 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + E++++ + Q+ +G M H +LF G G GK T+ A Sbjct: 20 IIDQEEVKERIKQFLKTGNMPH-MLFYGPPGTGKTTMALAIA------------------ 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY--W 131 L+ + L R + T+ E R++ F + TA G + Sbjct: 61 -------------RELYGDAWRENVLELNASDERGITTIRE--RVKEF-ARTAPMGKAPY 104 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M +A AL + +E FILI++ I+ I+SRC +F+ L + Sbjct: 105 KLVILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPK 164 Query: 192 NNLYKALEQL 201 + + L ++ Sbjct: 165 DAVLGRLREI 174 >gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis] gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis] Length = 348 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ K+ D + + A G + +A Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKEKVQCTDDGLEAIVFTAQGDMRQA 227 Query: 225 IKILHYDC 232 + + C Sbjct: 228 LNNVQSTC 235 >gi|304360728|ref|YP_003856859.1| putative DNA polymerase III [Clostridium phage phiCTP1] gi|302495587|gb|ADL40367.1| putative DNA polymerase III [Clostridium phage phiCTP1] Length = 280 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + VD IR +R S TA+T ++ + +D D + AANALLK EEPP ++ Sbjct: 57 LKVDSIRNLRNRASETADTKFYYLGDVD--DNLTTQAANALLKITEEPPDNAYIVMSVKD 114 Query: 170 SPTILSTIRSR 180 IL T++SR Sbjct: 115 ISNILGTLKSR 125 >gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371] gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371] Length = 417 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 15/222 (6%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A +Y S + T I V + S + G +++ Sbjct: 120 DRGIDVVREQIKTFASTSLVYKGRS----EAESLTAIIVGTKQIFSTAPSSGSGLGAFKL 175 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 176 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKD 235 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + E+++I D+ VK+ + G + RA+ +L Sbjct: 236 IRRLVDTVIEKEEVQIQP-DAIDSLVKL-SKGDMRRALNVLQ 275 >gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi] Length = 345 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 35/221 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HEDI + ++ RM H +LF G G GK + + V Sbjct: 29 LVSHEDIVGTIRRFVKESRMPH-MLFYGPPGTGKTSAILAASREV--------------- 72 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 F + S L L S + R ++ +RI ++ A T +++ Sbjct: 73 ------FGETSNSSVLE--LNASDDRGIDVARGR-ILNFASTKRI----AIQAGTASFKL 119 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F LI + I+ ++SRC +F L+ Sbjct: 120 IILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQ 179 Query: 194 LYKAL-----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + L E+ M D + + + A G + R + IL Sbjct: 180 ILPRLQAVVKEESLEMSPDGAKALLTL-AKGDMRRILNILQ 219 >gi|302806064|ref|XP_002984782.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii] gi|302808301|ref|XP_002985845.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii] gi|300146352|gb|EFJ13022.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii] gi|300147368|gb|EFJ14032.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii] Length = 354 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 58/105 (55%), Gaps = 4/105 (3%) Query: 98 SLNPKTGKWRTVITVDEIRR---IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 LNP ++ V EI + + L L + + +V++++ VD +++ A ++L +++ Sbjct: 96 ELNPSDAGFQDRYVVQEIIKEMAMSRPLDLGVDISF-KVLVLNEVDRLSKEAQHSLRRTM 154 Query: 155 EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 E+ IL ++ ++ +RSRCL+++ N+ SE+ + K L+ Sbjct: 155 EKYSAACRLILCCTSASKVIEAVRSRCLNVRINAPSEDEITKVLQ 199 >gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1] Length = 323 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 16/195 (8%) Query: 117 RIRYFLSLTANT----GY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I+ F +TANT GY +++I++D D M A +AL +++E+ F ++ + Sbjct: 82 KIKNFAVMTANTRVSGGYPCPPFKIILLDEADAMTEAAQSALRRTIEQHSNVTRFCMVCN 141 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARA 224 I+ + SRC +F LS+ + L+ ++ + D + + G + +A Sbjct: 142 YVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAENVKCADEVLQTIVKVSGGDMRQA 201 Query: 225 IKILHYDCDKIISSY-IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 I L C ++ I+ H+ ++ + Q +ELLS+ + +F+ L + I Sbjct: 202 ITFLQ-SCHRLRGDLGIETSHV--EDVSGLVPQSTINELLSRCNENSFEALQASVDDAIL 258 Query: 284 KSAKAAALSGQLEEA 298 + L QL E Sbjct: 259 SGFSGSQLLHQLHET 273 >gi|88856402|ref|ZP_01131060.1| DNA polymerase III subunits gamma and tau [marine actinobacterium PHSC20C1] gi|88814269|gb|EAR24133.1| DNA polymerase III subunits gamma and tau [marine actinobacterium PHSC20C1] Length = 713 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P L G + L + R++HA LF G +G GK T A + Sbjct: 7 RRYRPETFAELIGQSQVTDPLRTALRTDRVNHAYLFSGPRGCGKTTSARILARCLNCAEG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P +C C + +L + S N VD+ R +R Sbjct: 67 PTDTPCGVCAS--CVELSRD-GGGSLDVVEIDAASHN----------GVDDARDLRERAV 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ ++D + NA+LK +EEPP+ V FI + ++ TIRSR Sbjct: 114 FAPARDRFKIFILDEAHMVTPQGFNAMLKIVEEPPEHVKFIFATTEPDKVIGTIRSRTHH 173 Query: 184 IKFNSLSENNLYKALEQL 201 F + + ++QL Sbjct: 174 YPFRLVPPAQMLDYVQQL 191 >gi|257452927|ref|ZP_05618226.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium sp. 3_1_5R] gi|317059468|ref|ZP_07923953.1| ATPase and helicase [Fusobacterium sp. 3_1_5R] gi|313685144|gb|EFS21979.1| ATPase and helicase [Fusobacterium sp. 3_1_5R] Length = 290 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +++IR ++ G ++ ++ + + + +ANALLKS+EEP + F+L S Sbjct: 73 LKIEDIREAETSFHESSYEGERKIFILPNIQDLRKESANALLKSIEEPGEGTFFLLWS-T 131 Query: 170 SPTILSTIRSRCLSI 184 IL+TIRSR + + Sbjct: 132 RKNILATIRSRAIQV 146 >gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus DX253] gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus DX253] Length = 325 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 42/220 (19%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI L Y + + LLF G+ GIGK T A + Sbjct: 30 GHDDITARLKSYIERNDLPN-LLFSGQAGIGKTTCAVAIAKEL----------------- 71 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVI 134 + SH +L + + + G +D +R +I+ F +++I Sbjct: 72 ----YGDSWQSH------FLELNASDERG-------IDVVRDQIKNFARHDPGAVDFQII 114 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +D D + +A AL +++E+ K FI+ + S I+ I+SRC +F + ++ + Sbjct: 115 FLDEADSLTSDAQAALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAV 174 Query: 195 -----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 Y A E+ I D + + AA G + +AI L Sbjct: 175 AGYVQYVADEE-GIETTDDGIEALVYAADGDMRKAINALQ 213 >gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis] gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis] Length = 354 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 32/184 (17%) Query: 117 RIRYFLSLTANT--------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I+ F LTA+ +++I++D D M A AL +++E+ + F LI + Sbjct: 114 KIKNFAQLTASNVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 173 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVAR 223 I+ I SRC +F +L E + L+ + + + D+ + VKI+ G + R Sbjct: 174 YVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQENVNIDPDAYKSIVKISG-GDMRR 232 Query: 224 AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 AI L C ++ S ++ + D+LL I +L +++ E+C Sbjct: 233 AITTLQ-SCYRLKGS----------DHTIN-----TDDLLEMSGIIPEHYLEDYL--EVC 274 Query: 284 KSAK 287 +S K Sbjct: 275 RSGK 278 >gi|300707470|ref|XP_002995941.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01] gi|239605186|gb|EEQ82270.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01] Length = 310 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I+ F S +NT +++++D VD M R+A NAL + +E+ F LI++ I++ I Sbjct: 83 IKEFASTYSNT--IKLVVLDEVDFMTRDAQNALRRIMEDFSSTTRFCLIANYPKKIITPI 140 Query: 178 RSRCLSIKFNSLS--ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 SRC +FN + ++ + ++ I + DF+ +YG + R + Sbjct: 141 TSRCSKFRFNPVKIFRKSVLEICKKENIEVEYTGIDFLMKTSYGDMRRVV 190 >gi|156550041|ref|XP_001605078.1| PREDICTED: similar to replication factor C [Nasonia vitripennis] Length = 358 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA +++I++D D M A +AL +++E+ Q F LI + Sbjct: 116 KVKKFAQLTAGNTRPDGKPCPPFKIIILDEADSMTDAAQSALRRTMEKESQTTRFCLICN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARA 224 I+ + SRC +F L E + + LE + + S V A+ G + RA Sbjct: 176 YVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYICGEEDLKAEKSVLKLVVDASGGDLRRA 235 Query: 225 IKILH 229 I L Sbjct: 236 ITCLQ 240 >gi|256811337|ref|YP_003128706.1| Replication factor C [Methanocaldococcus fervens AG86] gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86] Length = 316 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 45/232 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G ++I K L +Y M H LLF G G+GK T A + Sbjct: 9 YRPKTLDEIVGQDEIVKRLKKYVEKKSMPH-LLFSGPPGVGKTTAALCLARDLF------ 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + +FL L+ S + G +D IR + T Sbjct: 62 -------------------GENWRENFLELNAS--DERG-------IDVIRTKVKDFART 93 Query: 126 ANTG--YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++I +D D + +A NAL +++E+ FIL + I+ I+SRC Sbjct: 94 KPIGDVPFKIIFLDESDALTPDAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAI 153 Query: 184 IKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L + ++ K L E LK+ +S + + + G + +AI +L Sbjct: 154 FRFSPLKKEDIAKKLKEIAEKEGLKLT--ESGLEAIIYVSEGDMRKAINVLQ 203 >gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49] gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49] gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1] gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG] Length = 398 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 24/200 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------GFRYAGHVLQ---N 61 + H+DI + + Y G++ H LLF G G GK + G HVL+ + Sbjct: 49 VLAHDDIIRTIRNYVHKGQLPH-LLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNAS 107 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D VR + F + ++ + L S P T + + ++ + Sbjct: 108 DDRGINTVR----EQIKTFAETSSTSFQQNRLIFGKSAVPATEAAEATSSHGQEKKGQGG 163 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 SL ++I++D D M A NAL + +E + V F LI + I I+SRC Sbjct: 164 PSL-------KLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRC 216 Query: 182 LSIKFNSLSENNLYKALEQL 201 +F +S +L Q+ Sbjct: 217 TGFRFTPVSSASLKTKAAQI 236 >gi|224373234|ref|YP_002607606.1| DNA polymerase III delta prime subunit HolB [Nautilia profundicola AmH] gi|223589825|gb|ACM93561.1| DNA polymerase III delta prime subunit HolB [Nautilia profundicola AmH] Length = 183 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 5/107 (4%) Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 DF + L P + V+++++IR F + + I+I + + + NA Sbjct: 8 DDFEKVINELKPDEKVLADELKVEDVQKIREFAYIAEKNK--KTILI-AAEKYSVVSQNA 64 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK--FNSLSENNL 194 LLK LEEPP+ + FIL++ + +L TI+SR + K +N+L+E+++ Sbjct: 65 LLKLLEEPPKNIDFILLAKSKYALLDTIKSRLILEKKIYNTLNESDI 111 >gi|50954176|ref|YP_061464.1| DNA polymerase III subunits gamma and tau [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950658|gb|AAT88359.1| DNA polymerase III, gamma and tau subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 789 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 17/180 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L+ + R++HA LF G +G GK T R L + Sbjct: 9 RRYRPDTFAEMIGQSQVTDPLTTALRTNRVNHAYLFSGPRGCGK-TTSARILARCL---N 64 Query: 64 FSKAPVRMCNPDPCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P + PC P +++ + G VD+ R IR Sbjct: 65 CAEGPTDI----PCGVCPSCVELSRGGGGSLDVVEIDAASHNG-------VDDARDIRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP V FI + ++ TIRSR Sbjct: 114 AIFAPARDRYKIFILDEAHMVTPQGFNALLKIIEEPPDHVKFIFATTEPEKVIGTIRSRT 173 >gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469] gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469] gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469] gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469] gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469] gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469] Length = 317 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 104/274 (37%), Gaps = 45/274 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G ++I L Y + M H LLF G G GK T A + Sbjct: 9 YRPKSLDEVVGQDEIVDRLKSYVKAKTMPH-LLFAGPAGTGKTTCAIALARELF------ 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + F L+ S G RT I Y + Sbjct: 62 -------------------GENWRASFHELNASDERGIGIVRTKIK-------EYARTAA 95 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 N +++I +D D + +A AL +++E + FIL + S I+ I+SRC + Sbjct: 96 PNDVGFKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFR 155 Query: 186 FNSLSENNLYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F L ++ K L+ + K + D+ V I+ G + +AI IL IS I Sbjct: 156 FTPLKSEDIKKRLKYIADSEGKKITEDALNAIVYISG-GDMRKAINILQMSA--AISDTI 212 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D + + L K + + D L + +A DF+ Sbjct: 213 DE-GVVYKATGLAKREDVEDVL---KKALAGDFI 242 >gi|300214868|gb|ADJ79284.1| DNA polymerase III, delta' subunit [Lactobacillus salivarius CECT 5713] Length = 330 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 32/226 (14%) Query: 23 FLSQYYC----SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---- 74 FL++++ ++ HA L G +G GK L A + + P C+ Sbjct: 11 FLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECNRI 70 Query: 75 -DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + P V + L I V++IR ++ + + +V Sbjct: 71 ENNNHPDVVTIMPDGLS-------------------IKVEQIRYLKSEFNKSGVESDRKV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I M+ AAN+LLK LEEP + L++ +L TI SRC ++ L+ Sbjct: 112 FIIQDAQKMSIGAANSLLKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLTSGQ 171 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-HYDCDKIISS 238 L ++L G K + SV A KI + + DKI+++ Sbjct: 172 LE---QELISEGISEKNSHILANLAQSVVEAKKINDNENFDKILAT 214 >gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] Length = 319 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 42/197 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L Q+ +G M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKARLRQFVKAGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I+SR Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRT 152 Query: 182 LSIKFNSLSENNLYKAL 198 + I+F+ L + ++ L Sbjct: 153 VMIRFSPLPKEAVFARL 169 >gi|116617410|ref|YP_817781.1| DNA polymerase III, delta prime subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096257|gb|ABJ61408.1| DNA polymerase III, delta prime subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H ++++ + P T + V +IR + TA ++ ++D V+ + +AAN+ Sbjct: 70 HPDVHITAPIPPATS-----LKVAQIRDLTPEFVTTATESPRKIFILDAVETLTASAANS 124 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 LLK +EEP L ++++ +L TIRSR ++ S Sbjct: 125 LLKFIEEPAGPQLIMMLTENMSDVLPTIRSRAQVVQLAS 163 >gi|307298651|ref|ZP_07578454.1| DNA polymerase III gamma/tau subunits-like protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915816|gb|EFN46200.1| DNA polymerase III gamma/tau subunits-like protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 342 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 + DFL + P++G I +D IR I + + + ++I + M +AN Sbjct: 54 VEDFLLI----EPESGN----IGIDRIRDIEEIMLHRPSGDGKKYVLIHQCERMTDESAN 105 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A LK LEEPP I+ + + ++L TIRSR +S++ Sbjct: 106 AFLKILEEPPSFATLIMTTTSWQSLLPTIRSRTVSMR 142 >gi|160903372|ref|YP_001568953.1| DNA polymerase III gamma/tau subunits-like protein [Petrotoga mobilis SJ95] gi|160361016|gb|ABX32630.1| DNA polymerase III gamma/tau subunits-like protein [Petrotoga mobilis SJ95] Length = 346 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I ++++R + FL N +V+ + +D +N AANA LK +EEPP+ L + Sbjct: 64 IKIEQVRDVEEFLMYKPNYAKVKVVFFEDIDRLNIEAANAALKLIEEPPEYALVFGTTTR 123 Query: 170 SPTILSTIRSRCL 182 +L TI+SR + Sbjct: 124 WNYLLPTIKSRFI 136 >gi|315605705|ref|ZP_07880738.1| DNA polymerase III subunits gamma and tau [Actinomyces sp. oral taxon 180 str. F0310] gi|315312660|gb|EFU60744.1| DNA polymerase III subunits gamma and tau [Actinomyces sp. oral taxon 180 str. F0310] Length = 973 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 19/181 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---Q 60 R + P ++ G E + + L + R+ HA LF G +G GK T R L Q Sbjct: 30 RRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGK-TTSARILARCLNCAQ 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P C +++A+ + G VD+ R +R Sbjct: 89 GP--TDKPCGQCA------SCRELATGGPGSLDVVEIDAASHGG-------VDDARDLRE 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 134 RATFAPVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSR 193 Query: 181 C 181 Sbjct: 194 T 194 >gi|324526295|gb|ADY48652.1| Replication factor C subunit 5 [Ascaris suum] Length = 207 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 10/127 (7%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 + ++I++D D M ++A NAL + +E+ + V F +I + I+ ++SRC +F Sbjct: 17 SHIKLIILDEADAMTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAP 76 Query: 189 LSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKI--LHYDCDKIISSYI 240 L E + L E LK + D +R +K+A +A +K +H D + +YI Sbjct: 77 LKEEQILPRLRHIAKSESLK-LTEDGERALMKLAGRA-LAPGMKFTYIHTDTHRHRYTYI 134 Query: 241 DLIHIPR 247 P+ Sbjct: 135 CATSFPK 141 >gi|260579452|ref|ZP_05847333.1| DNA polymerase III, gamma and tau subunits [Corynebacterium jeikeium ATCC 43734] gi|258602422|gb|EEW15718.1| DNA polymerase III, gamma and tau subunits [Corynebacterium jeikeium ATCC 43734] Length = 881 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD++R +R +RV +ID ++ NALLK +EEPP+ ++FI + Sbjct: 14 VDDMRELRERAFYAPAESRYRVFIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPE 73 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L TIRSR + F L+ ++ LE + Sbjct: 74 KLLQTIRSRTHNYPFRLLAPPDMRGLLESV 103 >gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis] Length = 356 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%) Query: 117 RIRYFLSLTANT--------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTAN+ +++I++D D M + A AL +++E+ + F LI + Sbjct: 116 KVKNFAQLTANSLREDGKKCPPYKIIILDEADSMTKAAQEALRRTMEKSSKTTRFCLICN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 I+ I SRC +F SLS + K L Sbjct: 176 YVTRIIPPIISRCSQFRFKSLSTEDQKKRL 205 >gi|66800141|ref|XP_628996.1| replication factor C subunit [Dictyostelium discoideum AX4] gi|74996427|sp|Q54BN3|RFC3_DICDI RecName: Full=Probable replication factor C subunit 3; AltName: Full=Activator 1 subunit 3 gi|60462442|gb|EAL60663.1| replication factor C subunit [Dictyostelium discoideum AX4] Length = 347 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 16/206 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 ID+ + P ++ H DI L SG H L++ G G GK T VLQ Sbjct: 4 IDK-YKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVY-GPSGAGKKTRILA----VLQE 57 Query: 61 --NPDFSKAPV-RMCNPDPCSPFVKQMASHALHDFLYLSYSLNP-KTGKWRTVITVDEIR 116 P+ K + P S Q+ + + H + +NP + G + V+ I+ Sbjct: 58 IYGPNALKLKIDHRTFKHPTSSKNIQITTISSHYHI----EINPGEAGSYDRVVIQTIIK 113 Query: 117 RIRYFLSLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 I + + + G +++++++ VD ++++A +AL +++E+ IL ++ ++ Sbjct: 114 EIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVID 173 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 I+SRCL I+ + S+ + K L ++ Sbjct: 174 PIKSRCLGIRVPAPSQEEIEKVLAKV 199 >gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1] gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1] Length = 418 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + ++ + LS+ S + H +LF G G GK + A L P+ Sbjct: 39 YRPKTLSEVTAQDNTIQILSRTMQSSNLPH-MLFYGPPGTGKTSTILALAKE-LYGPELM 96 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K+ V N + + DF S+ P + E + +RY Sbjct: 97 KSRVLELNASDERGI--SIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTVRYRDKYP 154 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC + Sbjct: 155 CPP--FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212 Query: 186 FNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F SL + N K LE + + D + V++A G + +AI L Sbjct: 213 FKSLDQGNAVKRVSDIAKLENVSLED-DVAEELVRVAD-GDLRKAITFLQ 260 >gi|166154397|ref|YP_001654515.1| DNA polymerase III subunit delta' [Chlamydia trachomatis 434/Bu] gi|166155272|ref|YP_001653527.1| DNA polymerase III subunit delta' [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348544|ref|ZP_05380551.1| DNA polymerase III subunit delta' [Chlamydia trachomatis 70] gi|255503084|ref|ZP_05381474.1| DNA polymerase III subunit delta' [Chlamydia trachomatis 70s] gi|255506762|ref|ZP_05382401.1| DNA polymerase III subunit delta' [Chlamydia trachomatis D(s)2923] gi|301335656|ref|ZP_07223900.1| DNA polymerase III subunit delta' [Chlamydia trachomatis L2tet1] gi|165930385|emb|CAP03878.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis 434/Bu] gi|165931260|emb|CAP06832.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525225|emb|CBJ14701.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis Sweden2] gi|296434773|gb|ADH16951.1| DNA polymerase III subunit delta' [Chlamydia trachomatis E/150] gi|296438493|gb|ADH20646.1| DNA polymerase III subunit delta' [Chlamydia trachomatis E/11023] Length = 290 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 T++ R IR + + +++ +I D + +A +A LK LE+PPQ +FIL+S Sbjct: 76 TIETPRAIRKDIWIHPYESPYKIYIIYEADRITLDAISAFLKLLEDPPQYGMFILVSALP 135 Query: 171 PTILSTIRSRCLS 183 + TIRSRC+S Sbjct: 136 QRLPPTIRSRCVS 148 >gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica] Length = 329 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++VI++D D M R+A AL + +E+ + V F LI + ++ I+SRC +F LS Sbjct: 107 FKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLS 166 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---HYDCDKIISSYI-DL 242 + +E+ I + D + A G + R++ IL H +K+ + + Sbjct: 167 VEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKV 226 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 PR+ ++++ + LL+QD K D + E +L+ Sbjct: 227 TGRPRR----NDIRRMMEWLLNQDIKYCMDSIEELMLE 260 >gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str. Fusaro] gi|110287811|sp|Q46C63|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str. Fusaro] Length = 334 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 34/195 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV ++ G E+ + L Y + + H LLF G G+GK A + D Sbjct: 15 YRPVRLDQVAGQEETIERLKSYVATKNLPH-LLFSGPPGVGKTASAVSIAREIF-GEDLW 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + +F L+ S RT +I+ F Sbjct: 73 R-----------------------ENFTELNASDERGIDVVRT--------KIKNFAKTA 101 Query: 126 ANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G +++I +D D + +A +AL +++E FIL + S I+ I+SRC Sbjct: 102 PMGGAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVF 161 Query: 185 KFNSLSENNLYKALE 199 +F LS+ + K LE Sbjct: 162 RFRRLSDEAIRKRLE 176 >gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis] gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis] Length = 332 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 36/220 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTINRFINQKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +H L L+ S + G R I + + + T G +++ Sbjct: 66 RQLYSP------AHFKSMVLELNASDDRGIGIVRGQI-------LNFASTRTIFCGTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ + V F +I + I+ ++SRC +F LS Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQ 172 Query: 194 ----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L K +++ + D ++ + A G + + + +L Sbjct: 173 MLPRLNKVIQEENVNVTDDGKNALLTLAKGDMRKVLNVLQ 212 >gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica] gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica] Length = 329 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++VI++D D M R+A AL + +E+ + V F LI + ++ I+SRC +F LS Sbjct: 107 FKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLS 166 Query: 191 ENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---HYDCDKIISSYI-DL 242 + +E+ I + D + A G + R++ IL H +K+ + + Sbjct: 167 VEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKV 226 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 PR+ ++++ + LL+QD K D + E +L+ Sbjct: 227 TGRPRR----NDIRRMMEWLLNQDIKYCMDSIEELMLE 260 >gi|313664900|ref|YP_004046771.1| DNA polymerase III, delta prime subunit [Mycoplasma leachii PG50] gi|312949949|gb|ADR24545.1| DNA polymerase III, delta prime subunit [Mycoplasma leachii PG50] Length = 247 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGYWRV--IMIDPVDGMNRNAANALLKSLEEPPQKV 161 G VIT E+ + +SL+A TG + +I + +AAN+LLK LEEPP Sbjct: 73 GNNNVVITNQEVLNLINKMSLSA-TGKQNIKFFIIKNAQNLKLSAANSLLKFLEEPPVNT 131 Query: 162 LFILISHASPTILSTIRSRC 181 IL+++ I++TI SRC Sbjct: 132 YGILLTNNYSEIINTIWSRC 151 >gi|329765879|ref|ZP_08257445.1| replication factor C [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137722|gb|EGG41992.1| replication factor C [Candidatus Nitrosoarchaeum limnia SFB1] Length = 315 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 35/170 (20%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H L+F G G+GK T A +L +++K Sbjct: 39 MPH-LMFSGSAGVGKTTTALCIARQIL--GEYAK-------------------------- 69 Query: 93 LYLSYSLNPKTGKWRTVITVDE-IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 Y+L R + V E +++ F + +++I++D D M +A AL Sbjct: 70 ---DYTLELNASDERGIGMVREKVKKFSRFAGMAEVP--FKIIILDEADEMTADAQTALR 124 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + +E+ + FILI++ I+ I+SRC + KF S+ + ++ LE + Sbjct: 125 RIIEDTAKYCRFILIANNISKIIDPIQSRCATFKFTSIPQEDVINHLESI 174 >gi|220905873|ref|YP_002481184.1| Hedgehog/intein hint domain-containing protein [Cyanothece sp. PCC 7425] gi|219862484|gb|ACL42823.1| Hedgehog/intein hint domain protein [Cyanothece sp. PCC 7425] Length = 1232 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ +A NALLK+LEEPP++V+F+L + +L TI SRC + + ++ + L + Sbjct: 709 LSGSAFNALLKTLEEPPKRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLTDMVQHLSTI 768 >gi|157362932|ref|YP_001469699.1| hypothetical protein Tlet_0063 [Thermotoga lettingae TMO] gi|157313536|gb|ABV32635.1| hypothetical protein Tlet_0063 [Thermotoga lettingae TMO] Length = 291 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +D+IR + FL +++ GY ++++I D + AAN++LK LEEPP +L S Sbjct: 53 IDDIRYMSQFLYTSSSDGY-KIVIIHRADRILHEAANSMLKILEEPPVYSEIVLTSAKYT 111 Query: 172 TILSTIRSR 180 +L TI+SR Sbjct: 112 DLLPTIKSR 120 >gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1] gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication factor C4 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 309 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 36/196 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G+E + +S S M H LLF G G GK T A +L N + Sbjct: 8 YQPSEIQDIVGNEATMELVSLMIESRDMPH-LLFTGPPGTGKTTCAKILARRLLGNKE-- 64 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 L L+ S RT I RR++ Sbjct: 65 -------------------------GLLELNASDERGIDTVRTTIKSFAQRRVK------ 93 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M A A+ + +E + FILI + I I+SRC ++ Sbjct: 94 --DCEFKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILR 151 Query: 186 FNSLSENNLYKALEQL 201 F+ + ++ + K L+++ Sbjct: 152 FDRIEQSVILKRLKEI 167 >gi|262067254|ref|ZP_06026866.1| ATPase and helicase subunit [Fusobacterium periodonticum ATCC 33693] gi|291379028|gb|EFE86546.1| ATPase and helicase subunit [Fusobacterium periodonticum ATCC 33693] Length = 289 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 26/189 (13%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 72 LNIDTVRDIIKKTYTSSHEGGAKVFILKNIQDIRKESANAMLKIIEEPTRDNFFILISK- 130 Query: 170 SPTILSTIRSRCLSIKFNSLSENNL-------------YKALEQLKIMGWDSKRDFVKIA 216 ILSTI+SR + + + L +E+ K + + D + Sbjct: 131 RLNILSTIKSRSIIYRIRKSTPEELGVDKYVYNFFLGISNDIEEYK----EQEIDLMLER 186 Query: 217 AYGSVARAIKILHYDCDKIISSYIDLIHIPR----QEYALQKMQQI--ADELLSQDQKIA 270 +Y S+A +K Y+ +K I IDL R + +L+K ++I A+++ S K + Sbjct: 187 SYKSIAGVLK--EYEKEKNIVVKIDLYKCLRNFVQESTSLKKYEKIKFAEDIYSNASKES 244 Query: 271 FDFLIEFIL 279 + ++++I+ Sbjct: 245 INLIVDYII 253 >gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities AAA [uncultured archaeon MedDCM-OCT-S05-C724] Length = 321 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 54/270 (20%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E + L Y M H LLF G GIGK T A + Sbjct: 9 YRPNNLSEVVGQEAVTTRLKNYVKESSMPH-LLFAGPAGIGKTTSALALAREMF------ 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 ++ H LH+ LN + +D +R +I+ F + Sbjct: 62 ----------------GELWQHNLHE-------LNASDERG-----IDVVRGKIKEF-AR 92 Query: 125 TANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 TA G +++I +D D + A AL +++E+ + F++ + S I+ I+SRC Sbjct: 93 TAPLGEKGFKIIFLDEADALTGAAQAALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCA 152 Query: 183 SIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDK 234 +F + +L K L E +K+ +K F + A G + RAI L Sbjct: 153 VFRFRPIKAEDLEKYLKFVASKENVKV----TKEAFESLTYLAQGDLRRAINGLQMAAAA 208 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLS 264 D+++ Q A + +++ D L S Sbjct: 209 KTEVTPDVVY---QAVAAARPEEVKDALES 235 >gi|301300463|ref|ZP_07206663.1| DNA polymerase III, delta' subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851960|gb|EFK79644.1| DNA polymerase III, delta' subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 330 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 32/226 (14%) Query: 23 FLSQYYC----SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---- 74 FL++++ ++ HA L G +G GK L A + + P C+ Sbjct: 11 FLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECNRI 70 Query: 75 -DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + P V + L I V++IR ++ + + +V Sbjct: 71 ENNNHPDVVTIMPDGLS-------------------IKVEQIRYLKSEFNKSGVESDRKV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I M+ AAN+LLK LEEP + L++ +L TI SRC ++ L+ Sbjct: 112 FIIQDAQKMSIGAANSLLKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLTPGQ 171 Query: 194 LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-HYDCDKIISS 238 L ++L G K + SV A KI + + DKI+++ Sbjct: 172 LE---QELISEGISEKNSHILANLAQSVVEAKKINDNENFDKILAT 214 >gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 315 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 40/230 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G+ DI K L + S + H LL G+ GIGK T + H L Sbjct: 13 YRPKLLDEIIGNVDIIKTLKSFRDSKQFPH-LLLCGQPGIGKTT-----SIHCL------ 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 +H L Y L R + T+ I+ F Sbjct: 61 --------------------AHELLKDRYKEAVLELNASDERGIETIRST--IKSFCEKK 98 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L +++++D D M A AL +++E + F+L + I+ I+SRC Sbjct: 99 LVLPDNLPKIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCAR 158 Query: 184 IKFNSLSENNLYKALEQL-KIMGWDSKRDFVK---IAAYGSVARAIKILH 229 + F L E L ++++ + D + D VK I + G + +AI L Sbjct: 159 LTFRPLGEEELMNRIKEIARCENVDIEDDAVKALEIVSEGDMRKAINALQ 208 >gi|327334774|gb|EGE76485.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL097PA1] Length = 941 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|116329802|ref|YP_799520.1| DNA polymerase III gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123491|gb|ABJ74762.1| DNA polymerase III gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 312 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 24/192 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALL-FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 + G E FL +Y LL F G G GK + R+ +VL F C Sbjct: 11 ILGQEVALTFLKRYTSKPETIPPLLIFHGPDGTGKESTSERFIKNVLC---FEGTSCGTC 67 Query: 73 NPDPCSPFVKQMASHALH------DFLYLSYSLNPK--TGKWRTVITVDEIRRIRYFLSL 124 C F++ + + + NP+ T +W IR L+ Sbjct: 68 A--SCKAFMRNSHPDYIRFPEDRGKIIAIGSEDNPEEFTIRW----------LIRSRLNY 115 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +R I+ + A ALLKSLEE P FI I + T+ TI SR + + Sbjct: 116 RPHLSKFRFIVFPDASLIGNEAETALLKSLEEAPSFSKFIFIVNNIDTLKETIISRAICV 175 Query: 185 KFNSLSENNLYK 196 F L++N+L K Sbjct: 176 PFQYLNQNDLKK 187 >gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis] gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis] Length = 332 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 36/220 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTINRFINQKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +H L L+ S + G R I + + + T G +++ Sbjct: 66 RQLYSP------AHFKSMVLELNASDDRGIGIVRGQI-------LNFASTRTIFCGTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ + V F +I + I+ ++SRC +F LS Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQ 172 Query: 194 ----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L K +E+ + D + + A G + + + +L Sbjct: 173 MMPRLNKVVEEENVNITDDGKKALLTLAKGDMRKVLNVLQ 212 >gi|161621801|ref|YP_054923.2| DNA polymerase III subunits gamma and tau [Propionibacterium acnes KPA171202] Length = 900 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 55 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 114 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 115 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 159 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 160 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 219 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 220 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 275 Query: 238 SYID 241 D Sbjct: 276 GAAD 279 >gi|17158706|ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] Length = 429 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 25/225 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G E I + L ++ A LF G +G GK + A + N S Sbjct: 9 YRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSL--NCQSS 66 Query: 66 KAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P PC K + + + D L + N V+ IR + Sbjct: 67 NEPTT----KPCGECNSCKGITASSSVDVTELDAASNSG---------VELIRELISTTQ 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ +ID ++ + ALLK++E PP+ V+FI + + TI SRC Sbjct: 114 FAPVESRFKIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQK 173 Query: 184 IKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA--AYGSVARAIK 226 F + + + LE++ S ++ + IA A +VA+A K Sbjct: 174 FDFKRVPVSLVASYLEKI------SHQESINIAPSAVTAVAKANK 212 >gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 338 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 36/198 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G++D + L+ + G + + +L G G+GK T A +L P F Sbjct: 25 YRPVTFKDVVGNDDAIRRLAAFAEVGNVPN-ILIAGPPGVGKTTTILCLA-RILLGPSFK 82 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL--S 123 +A + + +A +D R + TV +I+ F Sbjct: 83 EAVLEL---------------NASND---------------RGIDTVR--NKIKMFAQQK 110 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G ++I++D D M A AL +++E Q F + S I+ ++SRC Sbjct: 111 VTLPKGKHKIIVLDEADSMTDGAQQALRRTMEMYSQTTRFAFACNDSSKIIEPLQSRCAV 170 Query: 184 IKFNSLSENNLYKALEQL 201 ++F L + + K L Q+ Sbjct: 171 LRFTKLKDEEILKKLLQI 188 >gi|312869688|ref|ZP_07729835.1| DNA polymerase III, delta' subunit [Lactobacillus oris PB013-T2-3] gi|311094737|gb|EFQ53034.1| DNA polymerase III, delta' subunit [Lactobacillus oris PB013-T2-3] Length = 343 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD IR ++ + +A G ++ +I + M +AAN+LLK +EEP ++++ Sbjct: 92 IKVDRIRYLKSEFTKSAMEGSQKLFIIQDAEKMTTSAANSLLKFIEEPGPGTYILMLTSN 151 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +L TI+SR ++ L +L L Sbjct: 152 KSAVLPTIQSRTQVLEMAPLKRADLLGVL 180 >gi|289424444|ref|ZP_06426227.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] gi|289155141|gb|EFD03823.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] Length = 967 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 122 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 181 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 182 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 226 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 227 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 286 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 287 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 342 Query: 238 SYID 241 D Sbjct: 343 GAAD 346 >gi|86608578|ref|YP_477340.1| DNA polymerase III subunit delta' [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557120|gb|ABD02077.1| putative DNA polymerase III, delta' subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 343 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 8/183 (4%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V++++ + + +AANALLK+LEE P ILI+ + ++L T+ SRC + F LS Sbjct: 148 VVVLEGAETLAESAANALLKTLEE-PGPAHIILIAPQAASLLPTLLSRCQMVPFRRLSPE 206 Query: 193 NLYKALEQLKI--MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 + + L L + + + + + A GS A+ + H +I S ++ + Sbjct: 207 EVDRVLSGLGCPDLAGIPRSELIAL-AQGSPGLAL-LAHQHLQQIPPSLLEELKRWPWHS 264 Query: 251 ALQKMQQIADELLSQD---QKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFS 307 +LQ+ ++ + S + Q D+L + + + A + + + ++I Q Sbjct: 265 SLQQALELGRAVASLELPAQLWLIDYLQQHFWAQGSRQPFAPGVQSAIRQLERIRQHLLQ 324 Query: 308 LVK 310 LV+ Sbjct: 325 LVQ 327 >gi|313772740|gb|EFS38706.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL074PA1] gi|313832224|gb|EFS69938.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL007PA1] gi|314976987|gb|EFT21082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL045PA1] gi|327331270|gb|EGE73009.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA2] gi|327450460|gb|EGE97114.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA2] gi|328761179|gb|EGF74721.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL099PA1] Length = 948 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|313826420|gb|EFS64134.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA1] Length = 948 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|323254274|gb|EGA38091.1| DNA polymerase III subunit delta' [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 215 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 AANALLK+LEEPP++ F L S +L+T+RSRC Sbjct: 5 AANALLKTLEEPPEQTWFFLASPEPARLLATLRSRC 40 >gi|312066686|ref|XP_003136388.1| activator 1 38 kDa subunit [Loa loa] gi|307768452|gb|EFO27686.1| activator 1 38 kDa subunit [Loa loa] Length = 354 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 4/105 (3%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 A ++V ++ D + R+A NAL +++E+ Q IL + I+ ++SRCL++ Sbjct: 123 VATQRNFKVAVLMEADQLTRDAQNALRRTMEKYAQSCRLILCCDSISKIIDPLKSRCLAV 182 Query: 185 KFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAI 225 + + S++++ KA+ +Q + DS D V A G++ RA+ Sbjct: 183 RVAAPSDDDVAKAVRFVCKQENVSVPDSIVDAVVQKANGNMRRAL 227 >gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7] gi|166225156|sp|A6VJ61|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7] Length = 315 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 33/196 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH +I K L+ Y M H LLF G G+GK T A + Sbjct: 9 YRPQTLSEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDL------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 61 ------------------YGETWRENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ F+L + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKALEQL 201 F+ L +L + L+++ Sbjct: 156 FSPLKTEDLVENLKEI 171 >gi|149194493|ref|ZP_01871589.1| DNA polymerase III subunit delta' [Caminibacter mediatlanticus TB-2] gi|149135237|gb|EDM23717.1| DNA polymerase III subunit delta' [Caminibacter mediatlanticus TB-2] Length = 181 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 +DF + + P + + +++I I+ LT + I+I + N A NA Sbjct: 8 NDFEKIINEIKPNEVFLKDELKIEDIEEIKKVSFLTDKNK--KTILI-AANKYNIYAQNA 64 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 LLK LEEPP+ + FI+++ + +L TIRSR + Sbjct: 65 LLKILEEPPKNIEFIILAKSKYNLLDTIRSRLIE 98 >gi|229823578|ref|ZP_04449647.1| hypothetical protein GCWU000282_00876 [Catonella morbi ATCC 51271] gi|229787022|gb|EEP23136.1| hypothetical protein GCWU000282_00876 [Catonella morbi ATCC 51271] Length = 317 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + VD++R ++ +L + G + +I+ + +N ++ANALL LEEP V L S Sbjct: 80 TLKVDQVRELKEWLGQSPLEGRGKFAIIEQAERLNASSANALLTVLEEPVDNVYLFLWSP 139 Query: 169 ASPTILSTIRSRC 181 ++ +L TI SR Sbjct: 140 SANLLLPTILSRV 152 >gi|289428998|ref|ZP_06430678.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|289157999|gb|EFD06222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|313806717|gb|EFS45222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA2] gi|313811221|gb|EFS48935.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA1] gi|313824758|gb|EFS62472.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA2] gi|313828817|gb|EFS66531.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA2] gi|313840337|gb|EFS78051.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL086PA1] gi|314961562|gb|EFT05663.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA2] gi|314989198|gb|EFT33289.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA3] gi|315082833|gb|EFT54809.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA2] gi|315086408|gb|EFT58384.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA3] gi|315087895|gb|EFT59871.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA1] gi|327333903|gb|EGE75620.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA3] Length = 948 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6] gi|226739142|sp|A9A6K6|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6] Length = 315 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 40/261 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH +I K L+ Y M H LLF G G+GK T A + Sbjct: 9 YRPETLPEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDL------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 61 ------------------YGDTWRENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ FIL + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---DKIISS 238 F+ L +L + L E+ + D + + G + +AI +L D + Sbjct: 156 FSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEE 215 Query: 239 YIDLIHIPRQEYALQKMQQIA 259 + + + ++KM Q+A Sbjct: 216 IVYKVASKARPDEIKKMTQLA 236 >gi|197294305|ref|YP_001798846.1| DNA polymerase III, delta prime subunit [Candidatus Phytoplasma australiense] gi|171853632|emb|CAM11503.1| DNA polymerase III, delta prime subunit [Candidatus Phytoplasma australiense] Length = 315 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 ++I +++ F S ++ G R+ +I+ ++ AAN+LL LE P ++ L++ Sbjct: 82 EQILQLKDFFSQSSLFGEQRIYVIEEMEKTTLPAANSLLHFLENTPNNIIGFLLTDNLHQ 141 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 +L+TI SRC I + + L A+E+ K+ Sbjct: 142 VLTTIVSRCQVINIDVFKQQLLTPAIEERKL 172 >gi|314969702|gb|EFT13800.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL037PA1] Length = 293 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++++ D + A+ALLK++EEP K +++L + ++ TIRSRC + + Sbjct: 6 GCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLAT 65 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + + L + + + + + A G + RA + L +D ++ + + +P + Sbjct: 66 PRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RCLAWD-EEARARRNAIGELPTR 122 Query: 249 EYALQKMQQIADELLSQ 265 +L Q A++L++Q Sbjct: 123 LRSLGDCLQAAEDLVNQ 139 >gi|170584076|ref|XP_001896847.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit) [Brugia malayi] gi|158595810|gb|EDP34309.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit), putative [Brugia malayi] Length = 354 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 47/78 (60%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +TA ++V+++ D + R+A NAL +++E+ Q IL + I+ ++SRCL+ Sbjct: 122 VTATQRNFKVVVLVEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLKSRCLA 181 Query: 184 IKFNSLSENNLYKALEQL 201 ++ + S++++ KA+ + Sbjct: 182 VRVAAPSDDDVAKAVRHV 199 >gi|170726336|ref|YP_001760362.1| DNA polymerase III subunit delta' [Shewanella woodyi ATCC 51908] gi|169811683|gb|ACA86267.1| DNA polymerase III, delta prime subunit [Shewanella woodyi ATCC 51908] Length = 303 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 48/79 (60%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 I VD++R + L+ T+ G RV ++ + +N AANALLK+LEEP + L +L S Sbjct: 86 IKVDQVRALCQKLTSTSQQGGRRVAVLSQCEKLNLAAANALLKTLEEPGKDTLLLLQSDT 145 Query: 170 SPTILSTIRSRCLSIKFNS 188 +++TI SRC + F+S Sbjct: 146 PSRLMATISSRCQRVHFHS 164 >gi|86742982|ref|YP_483382.1| DNA polymerase III subunit delta' [Frankia sp. CcI3] gi|86569844|gb|ABD13653.1| DNA polymerase III, delta prime subunit [Frankia sp. CcI3] Length = 414 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G AGH Q+ + A C +P L D Sbjct: 42 MTHSWLFTGPAG----------AGH--QDAARAFAASLTCENEPPGCGECTGCHTVLTDT 89 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 ++ P+ + V ++R + + G WR+++I D + AANALLK Sbjct: 90 ATDLRTVQPEG----LSLGVKDVRALVRDAASAPTAGRWRILLITDADRLTEAAANALLK 145 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 +LEEP + +F+L + + +L TIRSRC ++ S ++ AL Sbjct: 146 ALEEPADRAVFLLCAPSVEDVLPTIRSRCRTVALRLPSATDVRDAL 191 >gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi] gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi] Length = 332 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 32/188 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + A + + F Sbjct: 25 LISHEEIISTITRFINQKQLPH-LLFYGPPGTGKTSTILACARQLYSSAHF--------- 74 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K M L L+ S + G R I + + + T G +++ Sbjct: 75 --------KSMV-------LELNASDDRGIGIVRGQI-------LNFASTRTIFCGTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ + V F +I + I+ ++SRC +F LS Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQ 172 Query: 194 LYKALEQL 201 + L Q+ Sbjct: 173 MLPRLNQI 180 >gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus] Length = 332 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 69 VRMCNPDPCSPFVKQMASHAL-HDFLYLSYS---LNPKTGKWRTVITVDEIRRIRYFLSL 124 V +C P K + HAL H L +Y+ L R + V ++ + Sbjct: 46 VIICGPPGTG---KTTSVHALAHTMLGDAYANAVLELNASDSRGIEVVRNTIKMFTQKKV 102 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T G +VI++D D M +A AL +++E F L + S I+ I+SRC + Sbjct: 103 TLPPGQHKVIILDEADSMTASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAIL 162 Query: 185 KFNSLSENNLYKALEQL 201 +F+ LSE + L+Q+ Sbjct: 163 RFSRLSEEEILLRLQQV 179 >gi|257466694|ref|ZP_05631005.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium gonidiaformans ATCC 25563] gi|315917846|ref|ZP_07914086.1| ATPase and helicase [Fusobacterium gonidiaformans ATCC 25563] gi|313691721|gb|EFS28556.1| ATPase and helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 290 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +++IR ++ G ++ ++ + + + +ANALLKS+EEP F+L S Sbjct: 73 LKIEDIREAETSFHESSYEGERKIFILPNIQDLRKESANALLKSIEEPGDGTFFLLWS-T 131 Query: 170 SPTILSTIRSRCLSI 184 IL+TIRSR + + Sbjct: 132 RKNILATIRSRAIQV 146 >gi|295129771|ref|YP_003580434.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] gi|50839298|gb|AAT81965.1| DNA polymerase III subunit gamma [Propionibacterium acnes KPA171202] gi|291376500|gb|ADE00355.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] Length = 957 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 112 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 171 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 172 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 216 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 217 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 276 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 277 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 332 Query: 238 SYID 241 D Sbjct: 333 GAAD 336 >gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon pisum] Length = 329 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HEDI + + ++ ++ H LLF G G GK + + C Sbjct: 22 LISHEDIIQTIGKFIKEDQLPH-LLFYGPPGTGKTST------------------ILAC- 61 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 KQ+ + A + L + + G I V + + + + T +++ Sbjct: 62 -------AKQLYTPAQFRSMVLELNASDDRG-----INVVRGQVLNFASTRTIFKSGFKL 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F LI + I+ ++SRC +F L Sbjct: 110 IILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQ 169 Query: 194 LYKAL----EQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 + L EQ K+ + D K+ + +A G + + + IL Sbjct: 170 IMPRLEYVVEQEKVKVTEDGKKALIDLAQ-GDMRKVLNILQ 209 >gi|227431243|ref|ZP_03913297.1| DNA polymerase III, delta prime subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353005|gb|EEJ43177.1| DNA polymerase III, delta prime subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 H ++++ + P T + V +IR + TA ++ ++D V+ + +AAN+ Sbjct: 70 HPDVHITAPIPPATS-----LKVAQIRDLTPEFVTTATESPRKIFILDAVETLTASAANS 124 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 LLK +EEP L ++++ +L TIRSR ++ S Sbjct: 125 LLKFIEEPAGPQLIMMLTENMSDVLPTIRSRAQVVQLVS 163 >gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster] gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia] gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans] gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster] gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster] gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster] gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia] gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans] gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct] gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct] Length = 332 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 38/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +Q S L L+ S + G R I + + + T +++ Sbjct: 66 RQLYSP--QQFKSMVLE----LNASDDRGIGIVRGQI-------LNFASTRTIFCDTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS++ Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQ 172 Query: 194 LYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + LE++ + D KR + +A G + + + +L Sbjct: 173 MMPRLEKIIEAEAVQITEDGKRALLTLAK-GDMRKVLNVLQ 212 >gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae] gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae] Length = 329 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 36/228 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + ++ R+ H LLF G G GK + A + + +F+ Sbjct: 16 YRPKEMTELISHQDIISTIQRFLDEDRLPH-LLFYGPPGTGKTSTILACARRLYADREFN 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 L L+ S + G R + +++ + T Sbjct: 75 SM------------------------VLELNASDDRGIGIVRGPV-------LQFASTRT 103 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++++++D D M +A NAL + +E+ + F LI + I+ I+SRC + Sbjct: 104 IFKRGFKLVILDEADAMTGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFR 163 Query: 186 FNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L + + LE + K+ D + + A G + R + IL Sbjct: 164 FGPLGVDQMLPRLEHVIQEEKVDVTDDGKKAILQLANGDMRRVLNILQ 211 >gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura] gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura] Length = 354 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ F LI + I+ I SRC +F L Sbjct: 136 FKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLG 195 Query: 191 ENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E + LE +KI D+ + VKI+ G + RAI L Sbjct: 196 EEKIIARLQHICELESVKI-DPDAYKTIVKISG-GDLRRAITTLQ 238 >gi|301801781|emb|CBW34492.1| putative DNA polymerase III, delta' subunit [Streptococcus pneumoniae INV200] Length = 296 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + IR + S +V +I+ + M+ NAAN+LLK +EEP +V ++ Sbjct: 86 VIKTERIRELVGQFSQAGIESQQQVFIIEQAEKMHPNAANSLLKIIEEPQSEVYIFFLTS 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 +L TIRSR F E L LE++ ++ Sbjct: 146 DEEKMLPTIRSRTQIFHFKK-QEEKLILLLEKMGLV 180 >gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis] gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis] Length = 354 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ F LI + I+ I SRC +F L Sbjct: 136 FKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLG 195 Query: 191 ENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E + LE +KI D+ + VKI+ G + RAI L Sbjct: 196 EEKIIARLQHICELESVKI-DPDAYKTIVKISG-GDLRRAITTLQ 238 >gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa II] gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa II] Length = 335 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 37/243 (15%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+D+ LS +G M H LLF G G GK + + + ++ + + D Sbjct: 24 HKDVVSMLSHVLKNGNMPH-LLFHGPPGTGKTSAVLALSRELFGPNEYKNRILELNASD- 81 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKW-RTVITVDEIRRIRYFLSLTANT-GYWRVI 134 + + D K W R V+ ++ I T N W+++ Sbjct: 82 ------ERGISVVRD----------KIKSWTRQVVQCNKTHEI------TGNLLPSWKIV 119 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 ++D + M +A +AL + +E + F++I + I+ + SRC +F +S N+ Sbjct: 120 ILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQ 179 Query: 195 YKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDCDKII--SSYIDLI 243 + L+ Q + D + + + G + R I IL + DK I SS +D+ Sbjct: 180 IERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVS 239 Query: 244 HIP 246 +P Sbjct: 240 GVP 242 >gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis carolinensis] Length = 342 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 42/288 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LLF G G GK + A + ++ +F+ Sbjct: 36 LISHQDILSTIQKFISEDRLPH-LLFYGPPGTGKTSTILACAKQLYKDKEFNSM------ 88 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 L L+ S + G R I + + + T +++ Sbjct: 89 ------------------VLELNASDDRGIGIVRGPI-------LSFASTRTIFKKGFKL 123 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN- 192 +++D D M + A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 124 VILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPEL 183 Query: 193 ---NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 L +E K+ D + + G + R++ IL + ++ + Sbjct: 184 MVPRLKHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQ 243 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ ++E K+ K AL L E Sbjct: 244 PLKSDIANILDWMLNQDFTAAYHNIMEL------KTLKGLALHDILTE 285 >gi|313813997|gb|EFS51711.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA1] gi|313821300|gb|EFS59014.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA1] gi|314926534|gb|EFS90365.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA3] gi|314980021|gb|EFT24115.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA2] gi|314987438|gb|EFT31529.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA2] gi|315081813|gb|EFT53789.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL078PA1] gi|315107699|gb|EFT79675.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA1] gi|315109896|gb|EFT81872.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA2] gi|327444628|gb|EGE91282.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA2] gi|328758132|gb|EGF71748.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL020PA1] Length = 982 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 137 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 196 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 197 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYID 241 D Sbjct: 358 GAAD 361 >gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545] gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545] Length = 335 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 38/194 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G+ D + L+ +G + + L+F G GIGK T A H L P + Sbjct: 17 YRPTKIDEIVGNADAVERLAAMAATGNVPN-LIFSGPPGIGKTTSILCLA-HTLLGPAYK 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 A + LN + +D +R +I+ F Sbjct: 75 DAVLE----------------------------LNASDDRG-----IDVVRNKIKMFAQK 101 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A A+ +++E F L +AS I+ I+SRC Sbjct: 102 KVTLPPGRHKIVLLDEADSMTSAAQQAMRRTMEIYSNTTRFALACNASEKIIEPIQSRCA 161 Query: 183 SIKFNSLSENNLYK 196 ++F LS+ + + Sbjct: 162 IVRFTRLSDQEVLE 175 >gi|94986361|ref|YP_605725.1| DNA polymerase III subunit, putative [Deinococcus geothermalis DSM 11300] gi|94556642|gb|ABF46556.1| DNA polymerase III subunit, putative [Deinococcus geothermalis DSM 11300] Length = 316 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 22/179 (12%) Query: 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHALHDF 92 +ALL G +GK + F A + + R + C P + +A+ D Sbjct: 26 NALLLTGPARVGKRDVAFAVAAQ------HNCSGTRGMYGEACGSCPSCRALAAGVHPDL 79 Query: 93 LYLSYSLNPKTGKW--RTVITVDEIRRIR-----------YFLSLTANTGYWRVIMIDPV 139 L + TG+ R VI + I R FL L T RV+++D Sbjct: 80 LLVEPRATTTTGRAARRKVIPIGAILADRDKGREYETHVFEFLELR-PTFRRRVVVVDGA 138 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 + + AANALLK +EEPP LF+ ++ ++ TI SR + + + + L Sbjct: 139 EHLGPEAANALLKLVEEPPHGALFVFLAEDLRAVIPTIVSRSARLSVTPAPDPAIERIL 197 >gi|313834284|gb|EFS71998.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL056PA1] gi|314974379|gb|EFT18474.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA1] gi|314985375|gb|EFT29467.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA1] gi|315097214|gb|EFT69190.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL038PA1] gi|327447352|gb|EGE94006.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA1] Length = 982 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 137 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 196 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 197 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYID 241 D Sbjct: 358 GAAD 361 >gi|327329176|gb|EGE70936.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL103PA1] Length = 948 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|32266119|ref|NP_860151.1| DNA polymerase III subunit delta' [Helicobacter hepaticus ATCC 51449] gi|32262168|gb|AAP77217.1| DNA poymerase III subunit delta' [Helicobacter hepaticus ATCC 51449] Length = 206 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/38 (60%), Positives = 26/38 (68%) Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 N+ A NALLK +EEPPQ V FILI+ L TIRSR Sbjct: 65 NQAAQNALLKIIEEPPQNVRFILIAKNKNAFLPTIRSR 102 >gi|313815375|gb|EFS53089.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA1] Length = 948 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|154149288|ref|YP_001406562.1| DNA polymerase III subunit delta' [Campylobacter hominis ATCC BAA-381] gi|153805297|gb|ABS52304.1| DNA polymerase III subunit delta [Campylobacter hominis ATCC BAA-381] Length = 205 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 30/41 (73%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 A N LLK LEEPP+ ++FI+I+++ ++L TIRSR L F Sbjct: 69 AQNTLLKILEEPPRNIIFIIITNSLNSLLPTIRSRLLVKNF 109 >gi|224438271|ref|ZP_03659198.1| DNA polymerase III subunit delta' [Helicobacter cinaedi CCUG 18818] Length = 217 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 T + ++I + N A NALLK +EEPP K+ FILI+ +L TIRSR I Sbjct: 61 TREKQSLIILAANKYNHAAQNALLKIIEEPPSKIQFILIAKNKNALLPTIRSRMRIITHK 120 Query: 188 S 188 S Sbjct: 121 S 121 >gi|90962198|ref|YP_536114.1| DNA polymerase III subunit delta' [Lactobacillus salivarius UCC118] gi|227891203|ref|ZP_04009008.1| DNA polymerase III subunit delta' [Lactobacillus salivarius ATCC 11741] gi|90821392|gb|ABE00031.1| DNA polymerase III, delta' subunit [Lactobacillus salivarius UCC118] gi|227867077|gb|EEJ74498.1| DNA polymerase III subunit delta' [Lactobacillus salivarius ATCC 11741] Length = 330 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 28/185 (15%) Query: 23 FLSQYYC----SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---- 74 FL++++ ++ HA L G +G GK L A + + P C+ Sbjct: 11 FLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECNRI 70 Query: 75 -DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + P V + L I V++IR ++ + + +V Sbjct: 71 ENNNHPDVVTIMPDGLS-------------------IKVEQIRYLKSEFNKSGVESDRKV 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +I M+ AAN+LLK LEEP + L++ +L TI SRC ++ L+ Sbjct: 112 FIIQDAQKMSIGAANSLLKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLTSGQ 171 Query: 194 LYKAL 198 L + L Sbjct: 172 LEQEL 176 >gi|314916439|gb|EFS80270.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA4] gi|314917280|gb|EFS81111.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA1] gi|314921655|gb|EFS85486.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA3] gi|314955184|gb|EFS99589.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA1] gi|315102222|gb|EFT74198.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA1] gi|327454471|gb|EGF01126.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA3] gi|327456539|gb|EGF03194.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA2] gi|328756234|gb|EGF69850.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA1] Length = 948 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|57238735|ref|YP_179871.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str. Welgevonden] gi|57160814|emb|CAH57712.1| putative DNA polymerase III, gamma subunit [Ehrlichia ruminantium str. Welgevonden] Length = 487 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 19/170 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 L G + + + L + ++ ++L G GIGK T + + P + P Sbjct: 15 LIGQDVLVRILRNAFHLNKVPQSILLTGSSGIGKTTAARIISMCLNCISGP--TSNPCNT 72 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 CN + + D + + + N ++++++ I T + Sbjct: 73 CNN------CISIKNFNHPDVIEIDAASNT---------SIEDVKIILENSHYVPITSKF 117 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 118 KVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRC 167 >gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM 17230] gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM 17230] Length = 323 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M +A AL + +E + FILI++ I+ I+SRC S +F L Sbjct: 101 FKIVILDEADNMTADAQQALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLK 160 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ L EQ K+ + D + + G + +AI IL Sbjct: 161 REDVTSRLRWICEQEKVKCDEDGLDVIYELSGGDMRKAINILQ 203 >gi|291276383|ref|YP_003516155.1| DNA polymerase III subunit delta' [Helicobacter mustelae 12198] gi|290963577|emb|CBG39409.1| Putative DNA polymerase III delta prime subunit [Helicobacter mustelae 12198] Length = 206 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 13/68 (19%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC-------------LSIKFNSLSEN 192 A NALLK LEEPP+ F+LI T L T+RSR S+ N+LS Sbjct: 73 AQNALLKILEEPPKNTTFVLIGKNKNTFLPTVRSRLHIEDKRIRAKIRDFSLDLNALSLQ 132 Query: 193 NLYKALEQ 200 +Y+ L+Q Sbjct: 133 GIYEYLKQ 140 >gi|315078844|gb|EFT50866.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA2] Length = 948 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|314965630|gb|EFT09729.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA2] Length = 948 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5] gi|166225155|sp|A4FZ74|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5] Length = 315 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 33/196 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH +I K L+ Y M H LLF G G+GK T A + Sbjct: 9 YRPETLPEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDL------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 61 ------------------YGETWRENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ FIL + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKALEQL 201 F+ L +L + L+ + Sbjct: 156 FSPLKTEDLVENLKDI 171 >gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei] gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei] Length = 365 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 31/190 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE + K L+++ + + H LLF G G GK T A Sbjct: 17 YRPSKLDELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAA---------- 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG---KWRTVITVDEIRRIR-YF 121 ++M S A + L + + + G T++ + + ++ Y Sbjct: 66 ----------------RKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYA 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++++++D D M ++A NAL + +E+ V F +I + +I+ I+SRC Sbjct: 110 TASSSDQVPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRC 169 Query: 182 LSIKFNSLSE 191 +F L + Sbjct: 170 TRFRFAPLDQ 179 >gi|47156991|gb|AAT12364.1| replication factor C activator 1 37KDa subunit [Antonospora locustae] Length = 210 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A A+ + +E FILI + I I+SRC +KF+ LS Sbjct: 3 FKIVILDEADSMTTAAQQAMRRVMEIYADTTRFILICNTFTKIFEPIQSRCAVLKFDRLS 62 Query: 191 ENNLYKALEQLKIM 204 + + LE++ ++ Sbjct: 63 DGEIRNELERICVI 76 >gi|322392106|ref|ZP_08065568.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus peroris ATCC 700780] gi|321145006|gb|EFX40405.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus peroris ATCC 700780] Length = 294 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + IR + S + +V +I+ + M+ NAAN+LLK +EEP ++ +++ Sbjct: 86 LIKTERIRELVGQFSQSGIENQRQVFIIEQAEKMHVNAANSLLKVIEEPQSEIYIFFLTN 145 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TIRSR +F Sbjct: 146 DQEQMLPTIRSRTQIFQF 163 >gi|314959377|gb|EFT03479.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA1] Length = 948 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|314969354|gb|EFT13452.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA1] Length = 982 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 137 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 196 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 197 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKGGIAVAPAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYID 241 D Sbjct: 358 GAAD 361 >gi|289177989|gb|ADC85235.1| DNA polymerase III subunit gamma/tau [Bifidobacterium animalis subsp. lactis BB-12] Length = 865 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G + + L ++ HA LF G +G GK + A + ++ Sbjct: 22 RRYRPDTFEGVIGQDQVTVPLMHALDENKLTHAYLFSGPRGCGKTSSARILARCINCVKG 81 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + +VD+ R +R Sbjct: 82 P--TSHPCGEC--DSC----RDLATGGPGSIDVVEIDAASHN-------SVDDARELRER 126 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ ++FI + ++ TIRSR Sbjct: 127 AGFAPVRDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHLMFIFATTEPDKVIGTIRSRT 186 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L EQ I V A GSV + +L D+++ Sbjct: 187 HHYPFRLVPPEIMTPYLEHVCEQEHIETEPGVLRLVTRAGGGSVRDTLSVL----DQLMG 242 Query: 238 SYID 241 +D Sbjct: 243 GCVD 246 >gi|237738882|ref|ZP_04569363.1| ATPase and helicase [Fusobacterium sp. 2_1_31] gi|229423985|gb|EEO39032.1| ATPase and helicase [Fusobacterium sp. 2_1_31] Length = 289 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 18/185 (9%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 72 LNIDAVRDIIKKTYTSSHEGGAKVFILKNIQDIRKESANAMLKIIEEPTRDNFFILISK- 130 Query: 170 SPTILSTIRSRCLSIKFNSLSEN---------NLYKALEQLKIMGWDSKRDFVKIAAYGS 220 ILSTI+SR + + + N + + + + D + +Y S Sbjct: 131 RLNILSTIKSRSIIYRVRKSTPEELGVDKYVYNFFLGISNDIAEYKEQEIDLMLEKSYKS 190 Query: 221 VARAIKILHYDCDKIISSYIDLIHIPR----QEYALQKMQQI--ADELLSQDQKIAFDFL 274 +A +K Y+ +K I IDL R + +L+K ++I A+++ S K + + + Sbjct: 191 IAGVLK--EYEKEKNIVVKIDLYKCLRNFVQESTSLKKYEKIKFAEDIYSNASKESINLI 248 Query: 275 IEFIL 279 +++I+ Sbjct: 249 VDYII 253 >gi|77408319|ref|ZP_00785061.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae COH1] gi|77173082|gb|EAO76209.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae COH1] Length = 287 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I ++ I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKIETIKELTKDFSRSGFEGKSQVFIIKYCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|25011665|ref|NP_736060.1| DNA polymerase III subunit delta' [Streptococcus agalactiae NEM316] gi|77411401|ref|ZP_00787748.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae CJB111] gi|24413205|emb|CAD47284.1| Unknown [Streptococcus agalactiae NEM316] gi|77162574|gb|EAO73538.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae CJB111] Length = 287 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKTETIKELTKDFSRSGFEGKSQVFIIKDCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|313764794|gb|EFS36158.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA1] gi|314930699|gb|EFS94530.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL067PA1] gi|328759443|gb|EGF73059.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA2] Length = 982 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 137 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 196 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 197 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYID 241 D Sbjct: 358 GAAD 361 >gi|58579613|ref|YP_197825.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str. Welgevonden] gi|58418239|emb|CAI27443.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str. Welgevonden] Length = 500 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 19/170 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPDFSKAPVRM 71 L G + + + L + ++ ++L G GIGK T + + P + P Sbjct: 28 LIGQDVLVRILRNAFHLNKVPQSILLTGSSGIGKTTAARIISMCLNCISGP--TSNPCNT 85 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 CN + + D + + + N ++++++ I T + Sbjct: 86 CNN------CISIKNFNHPDVIEIDAASNT---------SIEDVKIILENSHYVPITSKF 130 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ +A NALLK LEEP V FIL + I TI SRC Sbjct: 131 KVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRC 180 >gi|315094384|gb|EFT66360.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL060PA1] Length = 948 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|77413413|ref|ZP_00789605.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae 515] gi|77160507|gb|EAO71626.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae 515] Length = 287 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKTETIKELTKDFSRSGFEGKSQVFIIKDCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|313144709|ref|ZP_07806902.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818] gi|313129740|gb|EFR47357.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818] Length = 206 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 T + ++I + N A NALLK +EEPP K+ FILI+ +L TIRSR I Sbjct: 50 TREKQSLIILAANKYNHAAQNALLKIIEEPPSKIQFILIAKNKNALLPTIRSRMRIITHK 109 Query: 188 S 188 S Sbjct: 110 S 110 >gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis] gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis] Length = 356 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 14/126 (11%) Query: 117 RIRYFLSLTANT--------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I+ F LTA+ +++I++D D M A AL +++E+ + F LI + Sbjct: 116 KIKNFAQLTASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGW----DSKRDFVKIAAYGSVAR 223 I+ I SRC +F +L E + L+ + ++ G D+ + V+I+ G + R Sbjct: 176 YVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISG-GDMRR 234 Query: 224 AIKILH 229 AI L Sbjct: 235 AITTLQ 240 >gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST] gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST] Length = 327 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++I++D D M +A NAL + +E+ + V F +I + I+ I+SRC +F Sbjct: 106 GGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAP 165 Query: 189 LSENNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILH 229 LS + + LE ++ G D D K A G + + + +L Sbjct: 166 LSPDQILPRLEHVVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQ 210 >gi|321248728|ref|XP_003191220.1| subunit of DNA Replication factor C (RF-C); Rfc5p [Cryptococcus gattii WM276] gi|317457687|gb|ADV19433.1| Subunit of DNA Replication factor C (RF-C), putative; Rfc5p [Cryptococcus gattii WM276] Length = 356 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + L SG H +LF G G GK T L P K +R+ Sbjct: 19 HDGLSSRLKSLAASGDFPH-ILFYGPSGAGKKT-RIMCTLRELYGPGVEK--LRIDQRVF 74 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVI 134 +P +++ + + ++ L P G + V+ D ++ I + N ++V+ Sbjct: 75 VTPSNRKLDVNVVQSNYHIE--LTPSDVGMYDRVVIQDILKEIAQTQQVDLNAKQRFKVV 132 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I+ D + R+A AL +++E+ + IL ++++ I++ IRSRCL ++ + +++ + Sbjct: 133 IINEADALTRDAQAALRRTMEKYMANMRLILCANSTSKIIAPIRSRCLLMRVAAPTDDEM 192 Query: 195 YKAL 198 L Sbjct: 193 TTVL 196 >gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15] gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15] Length = 1017 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 22/218 (10%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 + LS+ S + H +LF G G GK + A L P+ K+ V N Sbjct: 661 QILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQ-LYGPELMKSRVLELNASDERGI- 717 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVD----EIRRIRYFLSLTANTGYWRVIMID 137 + + DF S+ P V+T D E + +RY + +++I++D Sbjct: 718 -SIVRQKVKDFARQQLSVAPTY----NVMTEDKDGGEAKMVRYRDKYSCPP--FKIIVLD 770 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK- 196 D M ++A +AL +++E + F L+ + I+ + SRC +F SL + N + Sbjct: 771 EADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRR 830 Query: 197 -----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 LE +K+ S+ + V++A G + +AI L Sbjct: 831 VDDIAKLEDVKLDAGVSE-ELVRVAD-GDLRKAITFLQ 866 >gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404] gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404] Length = 354 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 29/220 (13%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 E K L+Q SG + H +LF G G GK + A L P+ K+ V N Sbjct: 37 SQEHTVKVLTQTITSGNLPH-MLFYGPPGTGKTSTILALA-KTLYGPNLYKSRVLELNAS 94 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + + +F L+ S NP +Y +++I+ Sbjct: 95 DERGI--SIVREKIKNFARLTIS-NPSKEDLE-----------KYPCP------PYKIII 134 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M +A +AL +++E F+LI + I+ + SRC +F L+ N Sbjct: 135 LDEADSMTNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENAL 194 Query: 196 KAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L E L+ G D + +KI+A G + + I L Sbjct: 195 LRLRFIANEENLRYTGDDVLNEVLKISA-GDLRKGITYLQ 233 >gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae] gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae] Length = 332 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 38/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I +S++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTISRFISRKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +Q S L L+ S + G R I + + + T +++ Sbjct: 66 RQLYSP--QQFKSMVLE----LNASDDRGIGIVRGQI-------LNFASTRTIFCDTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS + Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQ 172 Query: 194 LYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + LE++ + D KR + +A G + + + +L Sbjct: 173 MMPRLEKIIDAEAVQITEDGKRALLTLAK-GDMRKVLNVLQ 212 >gi|77406663|ref|ZP_00783706.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae H36B] gi|77174735|gb|EAO77561.1| DNA polymerase III, delta prime chain [Streptococcus agalactiae H36B] Length = 287 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKTETIKELTKDFSRSGFEGKSQVFIIKGCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|58263060|ref|XP_568940.1| DNA clamp loader [Cryptococcus neoformans var. neoformans JEC21] gi|134107896|ref|XP_777330.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260020|gb|EAL22683.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223590|gb|AAW41633.1| DNA clamp loader, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 356 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + L SG H +LF G G GK T L P K +R+ Sbjct: 19 HDGLSSRLKSLAASGDFPH-ILFYGPSGAGKKT-RIMCTLRELYGPGVEK--LRIDQRVF 74 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVI 134 +P +++ + + ++ L P G + V+ D ++ I + N ++V+ Sbjct: 75 VTPSNRKLDVNVVQSNYHIE--LTPSDVGMYDRVVIQDILKEIAQTQQVDLNAKQRFKVV 132 Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 +I+ D + R+A AL +++E+ + IL ++++ I++ IRSRCL ++ + +++ + Sbjct: 133 IINEADALTRDAQAALRRTMEKYMTNMRLILCANSTSKIIAPIRSRCLLMRVAAPTDDEM 192 Query: 195 YKAL 198 L Sbjct: 193 STVL 196 >gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 417 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + ++ + LS+ S + H +LF G G GK + A L P+ Sbjct: 39 YRPKTLSEVTAQDNTIQILSRTMQSSNLPH-MLFYGPPGTGKTSTILALAKE-LYGPELM 96 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K+ V N + + DF S+ P + E + +RY Sbjct: 97 KSRVLELNASDERGI--SIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTVRYRDKYP 154 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC + Sbjct: 155 CPP--FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKI----AAYGSVARAIKILH 229 F SL + N K + + + S D V A G + +AI L Sbjct: 213 FKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQ 260 >gi|22537715|ref|NP_688566.1| DNA polymerase III subunit delta' [Streptococcus agalactiae 2603V/R] gi|76787329|ref|YP_330194.1| DNA polymerase III subunit delta' [Streptococcus agalactiae A909] gi|22534604|gb|AAN00439.1|AE014263_18 DNA polymerase III, delta prime subunit, putative [Streptococcus agalactiae 2603V/R] gi|76562386|gb|ABA44970.1| DNA polymerase III, delta prime subunit [Streptococcus agalactiae A909] Length = 287 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKTETIKELTKDFSRSGFEGKSQVFIIKDCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|319745549|gb|EFV97851.1| DNA-directed DNA polymerase III subunit delta' [Streptococcus agalactiae ATCC 13813] Length = 287 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I + I+ + S + G +V +I + M+ NAAN+LLK +EEP IL+++ Sbjct: 83 LIKTETIKELTKDFSRSGFEGKSQVFIIKDCEKMHVNAANSLLKFIEEPQSSSYVILLTN 142 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TI+SR +F Sbjct: 143 DENNVLPTIKSRTQIFRF 160 >gi|329942860|ref|ZP_08291639.1| DNA polymerase III subunit gamma/tau [Chlamydophila psittaci Cal10] gi|313848032|emb|CBY17030.1| putative DNA polymerase III subunit [Chlamydophila psittaci RD1] gi|325507322|gb|ADZ18960.1| DNA polymerase III subunit [Chlamydophila psittaci 6BC] gi|328815120|gb|EGF85109.1| DNA polymerase III subunit gamma/tau [Chlamydophila psittaci Cal10] gi|328914701|gb|AEB55534.1| DNA-directed DNA polymerase III chain [Chlamydophila psittaci 6BC] Length = 295 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 20/163 (12%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 G++ HA+L G + + A H+L +P + S LH Sbjct: 22 GKVCHAILLHGSSLSILSQYAYNLASHILLKD---------------TPEARYKISQKLH 66 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + P +GK R + +++ R I+ +++ GY+++ +I VD M A + Sbjct: 67 PDIQ---EFQP-SGKGR-LHSIEIPRDIKKQIAILPYEGYYKIYIIHEVDRMTLPAISVF 121 Query: 151 LKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 LK LEE P + IL S I +TI SR LSI + N Sbjct: 122 LKVLEEAPSHSVIILTSAKLQRIPATILSRSLSIHIQGQEKTN 164 >gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp. lyrata] gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp. lyrata] Length = 1222 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 27/203 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P++ + L G + + L R+ LF+G +G GK + F A + + + Sbjct: 459 YRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEE 518 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C+ F+ S DF L + N K ++RY L Sbjct: 519 M--KPCGYCK--ECNEFM----SGKSKDFWELDGA-NKKGAD-----------KVRYLLK 558 Query: 124 -----LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L N+ ++V +ID + + LK LE P QKV+FI I+ + TI+ Sbjct: 559 NLPTILPRNSSMYKVFVIDECHLLPLKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQ 618 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC F+ L ++++ L+++ Sbjct: 619 SRCQKFLFDKLKDSDIVVRLKKI 641 >gi|290561887|gb|ADD38341.1| Replication factor C subunit 3 [Lepeophtheirus salmonis] Length = 353 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 45/68 (66%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD + ++A +AL +++E+ IL S+++ I+ I+SRCLSI+ + S Sbjct: 127 FKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRCLSIRIPAPS 186 Query: 191 ENNLYKAL 198 +++ + L Sbjct: 187 ADDIIQIL 194 >gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura] gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura] Length = 333 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 29/181 (16%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS Sbjct: 110 FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLS 169 Query: 191 ENNLYKALEQL-------------KIMGWDSKRDFVKI-AAYGSVARAIKILHYDCDKII 236 + + LEQ+ K + SK D K+ S A A +++ D + Sbjct: 170 PDKMIPRLEQIVQSEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVYMC 229 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + Y P + Q ++ I LLS +F + F ++ KSA+ AL + Sbjct: 230 AGY------PLR----QDIENILKALLS-----GHNFEVSFQNVDVAKSARGLALEDIIT 274 Query: 297 E 297 E Sbjct: 275 E 275 >gi|183602338|ref|ZP_02963705.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis HN019] gi|219682696|ref|YP_002469079.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis AD011] gi|241190272|ref|YP_002967666.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195678|ref|YP_002969233.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218552|gb|EDT89196.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis HN019] gi|219620346|gb|ACL28503.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium animalis subsp. lactis AD011] gi|240248664|gb|ACS45604.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250232|gb|ACS47171.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793259|gb|ADG32794.1| DNA polymerase III subunits gamma and tau [Bifidobacterium animalis subsp. lactis V9] Length = 850 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQN 61 R + P + + G + + L ++ HA LF G +G GK + A + ++ Sbjct: 7 RRYRPDTFEGVIGQDQVTVPLMHALDENKLTHAYLFSGPRGCGKTSSARILARCINCVKG 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C D C + +A+ + +VD+ R +R Sbjct: 67 P--TSHPCGEC--DSC----RDLATGGPGSIDVVEIDAASHN-------SVDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP+ ++FI + ++ TIRSR Sbjct: 112 AGFAPVRDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHLMFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L EQ I V A GSV + +L D+++ Sbjct: 172 HHYPFRLVPPEIMTPYLEHVCEQEHIETEPGVLRLVTRAGGGSVRDTLSVL----DQLMG 227 Query: 238 SYID 241 +D Sbjct: 228 GCVD 231 >gi|315099548|gb|EFT71524.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA2] Length = 982 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 137 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 196 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 197 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L +L G D + + A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYID 241 D Sbjct: 358 GAAD 361 >gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae] gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae] Length = 331 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 40/205 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G+ED LS + G + ++ G G+GK T + +L + Sbjct: 22 YRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTT-IQCLARILLGDSYK 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +A L + + + G +D +R +I+ F Sbjct: 80 EA--------------------------VLELNASNERG-------IDVVRNKIKMFAQQ 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 107 KVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCA 166 Query: 183 SIKFNSLSENNLYKALEQLKIMGWD 207 ++F LS++ + L L++ W+ Sbjct: 167 MLRFTKLSDSQVLAKL--LEVSKWE 189 >gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis] gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis] Length = 339 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 33/180 (18%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ +G + H LLF G G GK T A H L P++ + + D Sbjct: 26 QEEVVRALTNTLETGNLPH-LLFYGPPGTGKTTTALAIA-HQLFGPEYKSRVLELNASDD 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----WR 132 V + + DF ++ S N+GY ++ Sbjct: 84 RGINVVRTK---IKDFAAVAVG------------------------SGNTNSGYLCPPFK 116 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M +A NAL +++E + F I + I+ + SRC +F L E+ Sbjct: 117 IIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVED 176 >gi|16330139|ref|NP_440867.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803] gi|1652627|dbj|BAA17547.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803] Length = 1116 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 20/36 (55%), Positives = 27/36 (75%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 567 AFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRC 602 >gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT] gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT] Length = 305 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 43/234 (18%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 G +I + L Y + + H LLF G G+GK Sbjct: 1 MGQPEIVRRLKSYVATRNLPH-LLFSGPPGVGKTAAAI---------------------- 37 Query: 75 DPCSPFVKQMASHALHD-FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WR 132 V+++ D F+ L+ S RT +++ F + G ++ Sbjct: 38 ----SIVREIFGEGWRDNFIELNASDERGIDVVRT--------KVKDFARMAPLGGAEFK 85 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 VI +D D + +A +AL +++E FIL + S I+ I+SRC +F +L+ + Sbjct: 86 VIFLDEADALTSDAQSALRRTMERYSATCRFILSCNYSSKIIEPIQSRCAVYRFRALTPD 145 Query: 193 NLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + K + EQ + + + + A G + +AI L +IS +D+ Sbjct: 146 AIEKRIRYIAEQEGVEVTEDGIEAINYVARGDMRKAINALQ--AAALISDKVDM 197 >gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis] gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis] Length = 363 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY--------WRVIMID 137 S L +Y S L R + V E +I+ F LTAN ++++++D Sbjct: 87 SRELFGDMYKSRILELNASDERGIQVVRE--KIKNFSQLTANATRPDGRPCPPFKIVILD 144 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA 197 D M +A AL +++E+ + F LI + I+ + SRC +F L ++ L + Sbjct: 145 EADSMTPSAQAALRRTMEKQTKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLER 204 Query: 198 LEQLKIMGWDSKRD-------FVKIAAYGSVARAIKILH 229 L+++ D F+K A G + RAI + Sbjct: 205 LQKICTAENVQCDDEAILFFFFLKSACLGDMRRAITLFQ 243 >gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis] gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis] Length = 333 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 29/181 (16%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS Sbjct: 110 FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLS 169 Query: 191 ENNLYKALEQL-------------KIMGWDSKRDFVKI-AAYGSVARAIKILHYDCDKII 236 + + LEQ+ K + SK D K+ S A A +++ D + Sbjct: 170 PDKMIPRLEQIVQSEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVYMC 229 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + Y P + Q ++ I LLS +F + F ++ KSA+ AL + Sbjct: 230 AGY------PLR----QDIENILKALLS-----GHNFEVSFQNVDVAKSARGLALEDIIT 274 Query: 297 E 297 E Sbjct: 275 E 275 >gi|224531648|ref|ZP_03672280.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511113|gb|EEF81519.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 348 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVSDVKKIQAWIFSEKEKS--KVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1] gi|150415672|sp|A3CUX9|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1] Length = 322 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 45/232 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G +DI L Y +G + H LLF G GIGK T A Sbjct: 12 YRPRRLDEMVGQKDIVVRLQSYVKTGNLPH-LLFTGSAGIGKTTAAVALA---------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 +F S+ N + +D +R +I+ F Sbjct: 61 ------------------------REFFGDSWQTNFREMNASDERGIDVVRNQIKEFART 96 Query: 125 TANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++++ +D D + +A AL +++E + FIL + S I+ I+SRC Sbjct: 97 SPLAGATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAI 156 Query: 184 IKFNSL------SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F L E A E L + + D + A G + +AI L Sbjct: 157 YRFRPLDREAVIEETRRIAAAEGLTVT--EGALDAIVYVASGDMRKAINALQ 206 >gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_APKG10F13] Length = 323 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 47/245 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G + L+ Y M H LLF G G GK T Sbjct: 9 YRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTT---------------- 51 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-S 123 C+ + H LH+ LN + +D +R +I+ F + Sbjct: 52 ------CSLALAREMFGEHWQHNLHE-------LNASDERG-----IDVVRGKIKEFART 93 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++I +D D + A AL +++E+ + F+L + S I+ I+SRC Sbjct: 94 APIGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAV 153 Query: 184 IKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 +F L ++ + L E+LK+ D + + A G + RAI L DK Sbjct: 154 FRFRPLQGEDVQRYLKFIAGREKLKVN--DDAYEALAYLAQGDLRRAINSLQMAAAADKD 211 Query: 236 ISSYI 240 I+S + Sbjct: 212 ITSEV 216 >gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni] gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni] Length = 331 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 36/228 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L HE+I ++++ ++ H LLF G G GK + A + F Sbjct: 16 YRPNNLEDLISHEEIVSTINRFIGQKQLPH-LLFYGPPGTGKTSTILACARQLYTPAQF- 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K M L L+ S + G R I + + + T Sbjct: 74 ----------------KSMV-------LELNASDDRGIGIVRGQI-------LNFASTRT 103 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++I++D D M +A NAL + +E+ + V F +I + I+ ++SRC + Sbjct: 104 IFCGTFKLIILDEADAMTNDAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFR 163 Query: 186 FNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 F LS + L+++ + D + + A G + + + +L Sbjct: 164 FAPLSPEQMLPRLDKIVEAEAVTITDDGKKALLTLAKGDMRKVLNVLQ 211 >gi|282853259|ref|ZP_06262596.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|282582712|gb|EFB88092.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|313793235|gb|EFS41302.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA1] gi|313802801|gb|EFS44017.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA2] gi|314964646|gb|EFT08746.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA1] gi|314982793|gb|EFT26885.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA3] gi|315091446|gb|EFT63422.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA4] gi|315105106|gb|EFT77082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA2] gi|327457184|gb|EGF03839.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL092PA1] Length = 948 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 103 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 162 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 163 P--TPTPCGTCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L L +L G D + + A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYID 241 D Sbjct: 324 GAAD 327 >gi|170739791|ref|YP_001768446.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46] gi|168194065|gb|ACA16012.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46] Length = 699 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 48/268 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHH----ALLFEGEQGIGKATLGFRYAGHVL 59 + +D Y R+FG + + + + +C R+ LL G G GK T+ VL Sbjct: 8 KGWDEKYRPRVFG-DLVGQDGAVAWCKERVRERQVKTLLLHGPSGCGKTTIA-----RVL 61 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N +APV + PC +D Y + + G +++ R + Sbjct: 62 GNALNCRAPV---DGSPCLSCDICREFKPKNDTYYREHLCASQGG-------LEDARMLV 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 S + + Y ++ +D M A +ALL LEEP +F+L++ I + + Sbjct: 112 RASSASGSRKYRKIFALDEAHRMTGAAFDALLSRLEEPNSTTVFMLLTTDLEAIPEAVLT 171 Query: 180 RCLSIKFNSLSENNLYK----------------ALEQLKIMGWDSK----RDFVKIAAYG 219 R L I+ +S+ + AL+ L G S RD ++ +G Sbjct: 172 RSLRIEIRPISDEDALTYLNKICRHEGLEPEAAALQLLVETGRGSPRRLIRDLERVKDFG 231 Query: 220 S-----VARAIKILHYDCDKIISSYIDL 242 S V RA+ + H D ++ +Y+ + Sbjct: 232 SLTYDGVRRALDLDHAD---VVPAYLKV 256 >gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST] gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST] Length = 361 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 32/216 (14%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F L+ + Sbjct: 119 KVKTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCN 178 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSK-RDFVKIAAYGSVAR 223 I+ I SRC +F L E + + L +Q + D +D V I+ G + R Sbjct: 179 YVSRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISG-GDLRR 237 Query: 224 AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 AI L C ++ + I RQ ++L + +L EFI +C Sbjct: 238 AITTLQ-SCHRLKGAQ---ARIERQ------------DILEMSGVVPERYLEEFI--SVC 279 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 KS+ + L ++ A L +++ + +YN Sbjct: 280 KSSNYSKLEEYVQNLSYDAYSVGQLFEQLTEYIVYN 315 >gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii] gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii] Length = 1291 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G + + L+ GR+ LF+G +G GK++ +A + S Sbjct: 505 YRPKTFRDMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAAL---NCLS 561 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +R PC + +A L L SL+ + + ++ + L Sbjct: 562 SEELR-----PCGLCRECVA-------LNLGKSLDVREFDASRFNGLGSVKELLEVAILP 609 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++G +R+ ++D V + + N LK +EE P + ILI+ + T+ SRC Sbjct: 610 PSSGRYRLSVVDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYP 669 Query: 186 FNSLSENNLYKALEQL 201 F L + ++ L++L Sbjct: 670 FTKLKDPDIISRLQKL 685 >gi|218887028|ref|YP_002436349.1| DNA polymerase III subunit delta' [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757982|gb|ACL08881.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 321 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 76 PC--SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P +MA D + L + K +++ +R +R L G RV Sbjct: 93 PCLTCPSCLRMAGGGHRDLVVLDGN---KPSAEEGSFSIENVRALRGLLGEPPREGRRRV 149 Query: 134 IMIDPVDGMNR-NAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ VD R AAN LLKSLEEP F+L++ +L T+ SR Sbjct: 150 VVL--VDAHTRVEAANGLLKSLEEPRPTTCFVLLAPQRERLLPTLVSR 195 >gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta] gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta] Length = 332 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 38/221 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I ++++ ++ H LLF G G GK + + C Sbjct: 25 LISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS------------------TILACA 65 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 SP +Q S L L+ S + G R I + + + T +++ Sbjct: 66 RQLYSP--QQFKSMVLE----LNASDDRGIGIVRGQI-------LNFASTRTIFCDTFKL 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS++ Sbjct: 113 IILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQ 172 Query: 194 LYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + LE++ + D KR + +A G + + + +L Sbjct: 173 MMPRLEKIIEAEAVQITDDGKRALLTLAK-GDMRKVLNVLQ 212 >gi|330801755|ref|XP_003288889.1| replication factor C subunit [Dictyostelium purpureum] gi|325081034|gb|EGC34565.1| replication factor C subunit [Dictyostelium purpureum] Length = 349 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 8/202 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 ID+ + P ++ H+DI L SG H L++ G G GK T + Sbjct: 4 IDK-YKPSSLDKMDYHKDISANLKNMIKSGDFPHLLVY-GPSGAGKKTRILAILQEIYGV 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + K R P S Q+ + + H + +S + G + V+ I+ I Sbjct: 62 NVNKLKIDHRTFK-HPTSSKSIQITTISSHYHIEISPG---EAGSYDRVVIQTIIKEIAQ 117 Query: 121 FLSL-TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A+ G +++++++ VD ++++A +AL +++E+ IL ++ ++ I+S Sbjct: 118 SPPIENADLGPFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKS 177 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 RCL I+ + + + K L ++ Sbjct: 178 RCLGIRIPAPTNEEIEKVLSKV 199 >gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa] Length = 340 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 58/291 (19%), Positives = 117/291 (40%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + + +++ G + RA+ IL + ++ Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALITLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 238 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ ++E K+ K AL+ L E Sbjct: 239 TGHPLKSDIANILDWMLNQDFTTAYRNIMEL------KTLKGLALNDILTE 283 >gi|294102042|ref|YP_003553900.1| DNA polymerase III gamma/tau subunits-like protein [Aminobacterium colombiense DSM 12261] gi|293617022|gb|ADE57176.1| DNA polymerase III gamma/tau subunits-like protein [Aminobacterium colombiense DSM 12261] Length = 256 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK-- 160 +G T+ E R I LSL R+++I D + AAN++LK +EEPP+ Sbjct: 79 SGSLEKAPTISECREIAVELSLYPVVASCRLVVIQSADTLLLPAANSMLKIVEEPPEHGV 138 Query: 161 VLFILISHASPTILSTIRSRCLSIKF 186 +LF+L + L T++SRC ++ Sbjct: 139 ILFLL---ENDKFLPTLKSRCWNLAL 161 >gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia 768-28] gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia 768-28] Length = 338 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 43/204 (21%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + E++++ + Q +G M H +LF G G GK T+ A Sbjct: 20 IIDQEEVKERVKQLLKTGNMPH-MLFYGPPGTGKTTMALAIA------------------ 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY--W 131 L+ + L R + T+ E R++ F + TA G + Sbjct: 61 -------------RELYGDAWRENVLELNASDERGITTIRE--RVKEF-ARTAPMGKAPY 104 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M +A AL + +E FILI++ I+ I+SRC +F+ L + Sbjct: 105 KLIILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPK 164 Query: 192 NNLYKALEQLKIMGWDSKRDFVKI 215 + + L + + R+ VK+ Sbjct: 165 DAVLGRLRDI------ASREGVKV 182 >gi|289620609|emb|CBI52970.1| unnamed protein product [Sordaria macrospora] Length = 387 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 141 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 200 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 201 QGNAKKRLEEI 211 >gi|329117125|ref|ZP_08245842.1| DNA polymerase III, delta' subunit [Streptococcus parauberis NCFD 2020] gi|326907530|gb|EGE54444.1| DNA polymerase III, delta' subunit [Streptococcus parauberis NCFD 2020] Length = 291 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 16/149 (10%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 R++HA LF G+ + A + N P C C K ++ Sbjct: 22 RLNHAYLFSGD--YANFEMAIFLAKAIFCNNKIDFLPCGDCRT--CQLIDK-------NE 70 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 F L+ L P TG+ VI + +R + S T +V +I + M+ NAAN+LL Sbjct: 71 FSDLTI-LEP-TGQ---VIKTEAVREMMRNFSQTGYESQKQVFIIKDCEKMHTNAANSLL 125 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSR 180 K +EEP L+++ +L TI+SR Sbjct: 126 KFIEEPQSTSYIFLLTNDDNQVLPTIKSR 154 >gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii] gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii] Length = 1241 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G + + L+ GR+ LF+G +G GK++ +A + S Sbjct: 505 YRPKTFRDMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAAL---NCLS 561 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +R PC + +A L L SL+ + + ++ + L Sbjct: 562 SEELR-----PCGLCRECVA-------LNLGKSLDVREFDASRFNGLGSVKELLEVAILP 609 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++G +R+ ++D V + + N LK +EE P + ILI+ + T+ SRC Sbjct: 610 PSSGRYRLSVVDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYP 669 Query: 186 FNSLSENNLYKALEQL 201 F L + ++ L++L Sbjct: 670 FTKLKDPDIISRLQKL 685 >gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula] Length = 339 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 26/176 (14%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ +G H +LF G G GK T A H L P+ K+ V N Sbjct: 26 QEEVVRVLTNTLETGSCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRVLELNASD 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLN-PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + + DF ++ N PK G +++I+ Sbjct: 84 DRGI--NVVRTKIKDFAAVAVGTNKPKNGY---------------------PCPPYKIIV 120 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +D D M +A NAL +++E + F I + I+ + SRC +F L+E Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTE 176 >gi|291166623|gb|EFE28669.1| DNA polymerase III [Filifactor alocis ATCC 35896] Length = 241 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 11/84 (13%) Query: 110 ITVDEIRRIRYFLSLTANT-----GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 + VDE+R L NT G ++ + D ++ +A NALLK++EEP + +F Sbjct: 56 VGVDEVRE------LVKNTVLQPYGNQKIYLFLHADKLSVSAQNALLKTIEEPAKNTVFF 109 Query: 165 LISHASPTILSTIRSRCLSIKFNS 188 L+++ S +L TI SR +++ N+ Sbjct: 110 LLTNNSYKLLPTILSRTVTLYHNN 133 >gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis] gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis] Length = 356 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + N ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIDINGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 IL +++ I+ IRSRCL I+ + SEN + L+ Sbjct: 155 YVATCRIILSVNSTSRIIPAIRSRCLGIRVPAPSENEMTAVLQ 197 >gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Thermoproteus neutrophilus V24Sta] gi|170935661|gb|ACB40922.1| Replication factor C [Thermoproteus neutrophilus V24Sta] Length = 328 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 45/231 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ SG M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKSRLREFVRSGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEFAR 93 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++++++D D M +A AL + +E Q FIL+++ I+ I SRC Sbjct: 94 TAPIKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAV 153 Query: 184 IKFNS-----LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ ++E Y A + +G D+ D + + G + +AI +L Sbjct: 154 FRFSPMPRSLMAERLKYIAKREGIEVGEDAL-DLIYELSEGDMRKAINLLQ 203 >gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti] gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti] gi|108877369|gb|EAT41594.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti] Length = 358 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F L+ + Sbjct: 116 KVKTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSK-RDFVKIAAYGSVAR 223 I+ I SRC +F L E + + L EQ + D R+ V I+ G + R Sbjct: 176 YVSRIIEPITSRCTKFRFKPLGEEKVIERLRFICEQENVDVEDQAYREIVDISG-GDLRR 234 Query: 224 AIKILH 229 AI L Sbjct: 235 AITTLQ 240 >gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1] Length = 314 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 42/71 (59%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 74 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 133 Query: 191 ENNLYKALEQL 201 ++N K LE++ Sbjct: 134 QSNAKKRLEEI 144 >gi|167933140|ref|ZP_02520227.1| DNA polymerase III subunit delta' [candidate division TM7 single-cell isolate TM7b] Length = 71 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T G +++I + A NALLK LEEP Q + FIL + ++L T+RSRC Sbjct: 6 TQRKGVQTIVIIHDAAKLTEQAQNALLKILEEPHQNLHFILATKRIQSLLDTVRSRCQVK 65 Query: 185 KFNSLS 190 K ++ Sbjct: 66 KLRQVT 71 >gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes aegypti] gi|108874432|gb|EAT38657.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes aegypti] Length = 330 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 38/229 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE+I ++++ ++ H LLF G G GK + A + + F+ Sbjct: 15 YRPATLSDLISHEEIISTINKFIQEEQLPH-LLFYGPPGTGKTSTILACARQLYKPQSFN 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL- 124 + + LN + ++ +I F S Sbjct: 74 Q----------------------------MVLELNASDDRGINIVR----NQILNFASTR 101 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T +G +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC Sbjct: 102 TIFSGGYKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRF 161 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F LS + + LE + I D + + A G + + + +L Sbjct: 162 RFAPLSPDQILPRLEHVIDAEGIKVSDDGKKALMTLAGGDMRKVLNVLQ 210 >gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102] Length = 314 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 74 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 133 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 134 QGNARKRLEEI 144 >gi|221116027|ref|XP_002154784.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 322 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 38/229 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + ++ G++ H LLF G G GK + A + +F Sbjct: 127 YRPACLDDLISHKDIIDTIQKFISEGKLPH-LLFYGPPGTGKTSTILAVAKQLYSPKEF- 184 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 H++ L L+ S + G R I + + + T Sbjct: 185 ---------------------HSM--VLELNASDDRGIGIVREQI-------LGFASTRT 214 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++++++D D M +A NAL + +E+ + F LI + I+ I+SRC + Sbjct: 215 VFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFR 274 Query: 186 FNSLSENNLYKAL-----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L + + L E+ + D + +++ G + R++ IL Sbjct: 275 FGPLDADQVSLRLKHVIQEENVTVTEDGMKSLIRLGK-GDMRRSLNILQ 322 >gi|303248158|ref|ZP_07334422.1| putative DNA polymerase III delta' subunit [Desulfovibrio fructosovorans JJ] gi|302490422|gb|EFL50331.1| putative DNA polymerase III delta' subunit [Desulfovibrio fructosovorans JJ] Length = 290 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 + AL+ EG +A + A + N + P +C +Q+ + D Sbjct: 30 VPQALILEGGSAGERAAVALFLAARL--NCEAETPPCGVCG------TCRQILDNVFLDL 81 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 Y + I VD +R +R + RVI++ + AANALLK Sbjct: 82 QYFDGAAE--------TIKVDAMREVRRLVGEPPRGPGKRVIILAEAQALTEEAANALLK 133 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++EEP +F+L++ + T+ SR ++ Sbjct: 134 AMEEPRPGNVFVLLAPQRERLFPTLVSRSFTLTL 167 >gi|217071788|gb|ACJ84254.1| unknown [Medicago truncatula] Length = 262 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 45/75 (60%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++V++++ VD ++R A ++L +++E+ +L ++S + IRSRCL++ Sbjct: 125 TKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNV 184 Query: 185 KFNSLSENNLYKALE 199 + N+ SE + + L+ Sbjct: 185 RINAPSEEQIVEVLQ 199 >gi|327334821|gb|EGE76532.1| putative DNA polymerase III, delta' subunit [Propionibacterium acnes HL097PA1] Length = 293 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++++ D + A+ALLK++EEP K +++L + ++ TIRSRC + + Sbjct: 6 GCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLAT 65 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + + L + + + + + A G + RA + L +D ++ + + +P + Sbjct: 66 PRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLAWD-EEARARRNAIGELPTR 122 Query: 249 EYALQKMQQIADELLSQ 265 +L Q A++L++Q Sbjct: 123 LRSLGDCLQAAEDLVNQ 139 >gi|313772786|gb|EFS38752.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL074PA1] gi|313810926|gb|EFS48640.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL083PA1] gi|313831691|gb|EFS69405.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL007PA1] gi|313834427|gb|EFS72141.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL056PA1] gi|313840382|gb|EFS78096.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL086PA1] gi|314974768|gb|EFT18863.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL053PA1] gi|314977033|gb|EFT21128.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL045PA1] gi|314985481|gb|EFT29573.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL005PA1] gi|315097316|gb|EFT69292.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL038PA1] gi|327331314|gb|EGE73053.1| putative DNA polymerase III, delta' subunit [Propionibacterium acnes HL096PA2] gi|327447306|gb|EGE93960.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL043PA1] gi|327450248|gb|EGE96902.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL043PA2] gi|328761127|gb|EGF74671.1| putative DNA polymerase III, delta' subunit [Propionibacterium acnes HL099PA1] Length = 293 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++++ D + A+ALLK++EEP K +++L + ++ TIRSRC + + Sbjct: 6 GCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLAT 65 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + + L + + + + + A G + RA + L +D ++ + + +P + Sbjct: 66 PRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLAWD-EEARARRNAIGELPTR 122 Query: 249 EYALQKMQQIADELLSQ 265 +L Q A++L++Q Sbjct: 123 LRSLGDCLQAAEDLVNQ 139 >gi|154492832|ref|ZP_02032458.1| hypothetical protein PARMER_02471 [Parabacteroides merdae ATCC 43184] gi|154087137|gb|EDN86182.1| hypothetical protein PARMER_02471 [Parabacteroides merdae ATCC 43184] Length = 374 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 31/249 (12%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-----LQNPD 63 +Y + + G E+I+K L +G + HA LF + G G L YA ++ + Sbjct: 1 MYFKDIIGQEEIKKRLIHSAQTGVVPHAQLFTEQGGAGAFPLTLAYARYLNCTNRTETDS 60 Query: 64 FSKAPV-----RMCNPDP--CSPFVKQMASHALHDFLYLS-----------YSLNP---- 101 P + +PD P V + YL+ + ++ Sbjct: 61 CGHCPSCLKYNELAHPDLHFVFPIVSKKDKKKDVCDDYLTEWRGFLKDRPYFDIDGWLDY 120 Query: 102 -KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 G + +I E I LSL +R++++ + ++ AN LLK +EEPP+ Sbjct: 121 IDAGNSQALIYSKESDEIIRKLSLKIYEATYRILLVWLPEKLHPTCANKLLKIIEEPPRN 180 Query: 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-EQLKIMGWDSKRDFVKIAAYG 219 + +++S +L TI SR I + ++ ++ + + D+K V A G Sbjct: 181 TVILMVSELPDLVLGTILSRAQRINVRGIHPEDIAASMISRFNLTPEDAKH--VAHLANG 238 Query: 220 SVARAIKIL 228 S +A++ + Sbjct: 239 SYLKAVEAI 247 >gi|73668390|ref|YP_304405.1| replication factor C small subunit 2 [Methanosarcina barkeri str. Fusaro] gi|72395552|gb|AAZ69825.1| replication factor C subunit [Methanosarcina barkeri str. Fusaro] Length = 340 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 24/229 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA----GHVLQNPDFSKA 67 + + G+E LS+ SG + H L+F G + GK T A G +N +F+ Sbjct: 15 KEMLGNEHAVATLSELAQSGTLPH-LIFYGPENSGKTTAALALARQLYGRTWKN-NFAYF 72 Query: 68 PVRMCNPDPCSPFVKQMASHALHD--FLYLSYSLNPKTGKWRTVITV-DEIRRIRYFLSL 124 S F Q + + D F+ + +PK +++VI + EI I + + Sbjct: 73 N--------ASDFFDQGKRYLVRDKRFVRFLGTDDPKK-IYKSVIDIFKEI--INEYAGI 121 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +++I ID + +N +A +AL + +E+ FIL + +++ +RSR L I Sbjct: 122 ASLDADYKLIYIDNAESLNSDAQHALRRIMEKYSATCRFILSTTKPSKLIAPLRSRGLQI 181 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 F + ++ L L+++ K+ + D + +A G+VA+A++ L Sbjct: 182 FFTYVPDSVLKTHLKKIGCAEKLQLSEGAFDAILYSAKGNVAKAVQTLQ 230 >gi|110669521|ref|YP_659332.1| replication factor C small subunit I [Haloquadratum walsbyi DSM 16790] gi|121684598|sp|Q18E75|RFCS_HALWD RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Hwa RFC intein gi|109627268|emb|CAJ53758.1| replication factor C small subunit I [Haloquadratum walsbyi DSM 16790] Length = 649 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 11/126 (8%) Query: 112 VDEIR-RIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +D +R RI+ F + ++ GY R+I +D D + +A +AL +++E+ FIL + Sbjct: 415 IDVVRDRIKNF-ARSSFGGYDHRIIFLDEADSLTDDAQSALRRTMEQFADNTRFILSCNY 473 Query: 170 SPTILSTIRSRCLSIKFNSLSENNL------YKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 S I+ I+SRC +F+ LSE + A E +++ + D + AA G + R Sbjct: 474 SSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELT--EDGLDALVYAAGGDMRR 531 Query: 224 AIKILH 229 AI L Sbjct: 532 AINSLQ 537 >gi|13435948|gb|AAH04812.1| Rfc2 protein [Mus musculus] Length = 272 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 31 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 90 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ K+ D + + A G + +A Sbjct: 91 ASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQA 150 Query: 225 IKILH 229 + L Sbjct: 151 LNNLQ 155 >gi|315078379|gb|EFT50410.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL053PA2] Length = 293 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++++ D + A+ALLK++EEP K +++L + ++ TIRSRC + + Sbjct: 6 GCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLAT 65 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + + L + + + + + A G + RA + L +D ++ + + +P + Sbjct: 66 PRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLAWD-EEARARRNAIGELPTR 122 Query: 249 EYALQKMQQIADELLSQ 265 +L Q A++L++Q Sbjct: 123 LRSLGDCLQAAEDLVNQ 139 >gi|313765298|gb|EFS36662.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL013PA1] gi|313793191|gb|EFS41258.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL110PA1] gi|313802720|gb|EFS43938.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL110PA2] gi|313806378|gb|EFS44885.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL087PA2] gi|313814575|gb|EFS52289.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL025PA1] gi|313815334|gb|EFS53048.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL059PA1] gi|313817532|gb|EFS55246.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL046PA2] gi|313822007|gb|EFS59721.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL036PA1] gi|313824097|gb|EFS61811.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL036PA2] gi|313826464|gb|EFS64178.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL063PA1] gi|313828772|gb|EFS66486.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL063PA2] gi|314916049|gb|EFS79880.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL005PA4] gi|314917201|gb|EFS81032.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL050PA1] gi|314921700|gb|EFS85531.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL050PA3] gi|314926584|gb|EFS90415.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL036PA3] gi|314931093|gb|EFS94924.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL067PA1] gi|314955038|gb|EFS99444.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL027PA1] gi|314959077|gb|EFT03179.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL002PA1] gi|314961351|gb|EFT05452.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL002PA2] gi|314964603|gb|EFT08703.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL082PA1] gi|314980305|gb|EFT24399.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL072PA2] gi|314987390|gb|EFT31481.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL005PA2] gi|314989069|gb|EFT33160.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL005PA3] gi|315082153|gb|EFT54129.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL078PA1] gi|315082704|gb|EFT54680.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL027PA2] gi|315086063|gb|EFT58039.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL002PA3] gi|315087648|gb|EFT59624.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL072PA1] gi|315099503|gb|EFT71479.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL059PA2] gi|315101990|gb|EFT73966.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL046PA1] gi|315106310|gb|EFT78286.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL030PA1] gi|315110087|gb|EFT82063.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL030PA2] gi|327333302|gb|EGE75022.1| putative DNA polymerase III, delta' subunit [Propionibacterium acnes HL096PA3] gi|327445221|gb|EGE91875.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL013PA2] gi|327454516|gb|EGF01171.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL087PA3] gi|327456586|gb|EGF03241.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL083PA2] gi|327457140|gb|EGF03795.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL092PA1] gi|328755568|gb|EGF69184.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL087PA1] gi|328756896|gb|EGF70512.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL025PA2] gi|328758421|gb|EGF72037.1| putative DNA polymerase III subunit delta [Propionibacterium acnes HL020PA1] Length = 293 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V++++ D + A+ALLK++EEP K +++L + ++ TIRSRC + + Sbjct: 6 GCHQVVVVEDADRITERGADALLKAIEEPAPKTVWLLCAPTPEDVIVTIRSRCRRLHLAT 65 Query: 189 LSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQ 248 + + L + + + + + A G + RA + L +D ++ + + +P + Sbjct: 66 PRDEAVADLLTRRDGIAPEVAAEAAR-AGQGHIGRA-RRLAWD-EEARARRNAIGELPTR 122 Query: 249 EYALQKMQQIADELLSQ 265 +L Q A++L++Q Sbjct: 123 LRSLGDCLQAAEDLVNQ 139 >gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+] gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+] Length = 405 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 164 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 223 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 224 QGNAKKRLEEI 234 >gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I] gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I] Length = 329 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 40/199 (20%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + EDI + L ++ + H +LF G G GK T A Sbjct: 13 YRPKSLDEIVDQEDIVRRLKKFVEEKNVPH-MLFAGPPGTGKTTAALALA---------- 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-S 123 H L+ Y Y L R + D IR +++ F S Sbjct: 62 ---------------------HDLYGEKYRQYILELNASDERGI---DVIRTKVKEFARS 97 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T T ++++++D D M +A AL + +E FIL+++ I+ ++SRC+ Sbjct: 98 RTPPTVPFKLVILDEADNMTADAQQALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVY 157 Query: 184 IKFNSLSENNLYKALEQLK 202 +F L ++ K +E+LK Sbjct: 158 FRFRPLPKD---KVIERLK 173 >gi|78777845|ref|YP_394160.1| DNA polymerase III subunit delta' [Sulfurimonas denitrificans DSM 1251] gi|78498385|gb|ABB44925.1| DNA polymerase III, delta prime subunit [Sulfurimonas denitrificans DSM 1251] Length = 209 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 31/42 (73%) Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N + N+LLK+LEEPP+ + FI++S+++ +L T+RSR Sbjct: 69 NNFNTVSQNSLLKALEEPPRNIEFIILSNSTSNLLPTVRSRL 110 >gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514158|sp|A4WGV2|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514] Length = 329 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ G M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKARLREFVRGGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I SRC Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRC 152 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILH 229 +F+ + + + + L + K G + + D + + + G + +AI +L Sbjct: 153 AVFRFSPMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQ 204 >gi|317152768|ref|YP_004120816.1| DNA polymerase III subunit delta' [Desulfovibrio aespoeensis Aspo-2] gi|316943019|gb|ADU62070.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio aespoeensis Aspo-2] Length = 279 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 14/152 (9%) Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P +Q+ A +D L+ G+ +I V+ +R R + RV Sbjct: 61 PCGQCPACRQIGDLAFNDLLFYD-------GR-EGLIKVESVREQRSTWGQPPHGDGHRV 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI--RSRCLSIKFNSLSE 191 + AANALLKSLEEP +F+L + +L T+ RS +++ + + E Sbjct: 113 TIFAEAQMFMTEAANALLKSLEEPRPGNVFVLAAPQRERLLETLVSRSWVVTLAWPDIRE 172 Query: 192 NNLYKALEQLKIMG-WDSKRD-FVKIAAYGSV 221 N A ++G W S R F + ++ G+V Sbjct: 173 NEPAIAEWTTALVGFWQSGRGWFERTSSKGAV 204 >gi|157737447|ref|YP_001490130.1| putative DNA polymerase III delta prime subunit HolB [Arcobacter butzleri RM4018] gi|157699301|gb|ABV67461.1| putative DNA polymerase III delta prime subunit HolB [Arcobacter butzleri RM4018] Length = 211 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 29/38 (76%) Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A NALLK LEEPP+ ++FILI+++ ++L TI SR Sbjct: 76 KEAQNALLKILEEPPRNIVFILITNSKTSLLPTIYSRL 113 >gi|315637178|ref|ZP_07892400.1| DNA-directed DNA polymerase III subunit delta' [Arcobacter butzleri JV22] gi|315478545|gb|EFU69256.1| DNA-directed DNA polymerase III subunit delta' [Arcobacter butzleri JV22] Length = 211 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 29/38 (76%) Query: 144 RNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A NALLK LEEPP+ ++FILI+++ ++L TI SR Sbjct: 76 KEAQNALLKILEEPPRNIVFILITNSKTSLLPTIYSRL 113 >gi|33519859|ref|NP_878691.1| DNA polymerase III, delta prime subunit [Candidatus Blochmannia floridanus] gi|33504204|emb|CAD83466.1| DNA polymerase III, delta prime subunit [Candidatus Blochmannia floridanus] Length = 333 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 33/182 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + +YNQ LF + DI+K HHALL Q G+ L A ++ F Sbjct: 7 LNTIYNQILFSY-DIKK----------GHHALLLYSTQNNGEDILINSIARWLICKNSFK 55 Query: 66 KAPVRMCNPDPCSP-FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR----RIRY 120 ++ CN CS ++ + H + L L Y I VD IR I Sbjct: 56 ---IKYCNS--CSDCYLMNIGQHPDYYQLDLKYQAQS--------IGVDSIRDCIDSIYR 102 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F + + +++ I ++ + A N LLK LEEPP F S I T+ SR Sbjct: 103 FTQYSKS----KIVFIQYIEYLTDEAVNMLLKILEEPPDNTYFFFRSRKIINIPLTLLSR 158 Query: 181 CL 182 C+ Sbjct: 159 CV 160 >gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis carolinensis] Length = 329 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 88 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 147 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC ++++ L++ L K +E+ + D + + A G + +A Sbjct: 148 ASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIVEKENVQYTDDGLEAIIFTAQGDMRQA 207 Query: 225 IKILH 229 + L Sbjct: 208 LNNLQ 212 >gi|225713906|gb|ACO12799.1| Replication factor C subunit 3 [Lepeophtheirus salmonis] Length = 296 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 45/68 (66%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD + ++A +AL +++E+ IL S+++ I+ I+SRCLSI+ + S Sbjct: 130 FKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRCLSIRIPAPS 189 Query: 191 ENNLYKAL 198 +++ + L Sbjct: 190 ADDIIQIL 197 >gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus] Length = 339 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 33 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 85 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 118 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 119 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 178 Query: 192 NNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + + D + V +++ G + RA+ IL + ++ Sbjct: 179 ELMVPRLEHVVQEENVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 237 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ ++E K+ K AL L E + ++ Sbjct: 238 TGHPLKTDIANILDWMLNQDFTTAYKSIMEL------KTLKGLALHDILTEVHLFVHRVD 291 Query: 306 FSLVKRVHAFS 316 F R+H + Sbjct: 292 FPSSVRIHLLT 302 >gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens] Length = 338 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 40/183 (21%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ +G + H LLF G G GK T H L P+ K V Sbjct: 26 QEEVVRTLTNTLETGNLPH-LLFYGPPGTGKTTTALAIC-HQLFGPELYKTRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY------ 130 L L+ S + RT +I+ F + G Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKDFAGVAVGAGVSGYPCP 112 Query: 131 -WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V+++D D M +A NAL +++E + F I + I+ + SRC +F L Sbjct: 113 PFKVLILDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPL 172 Query: 190 SEN 192 EN Sbjct: 173 LEN 175 >gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 314 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 74 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 133 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 134 QGNARKRLEEI 144 >gi|225020182|ref|ZP_03709374.1| hypothetical protein CORMATOL_00184 [Corynebacterium matruchotii ATCC 33806] gi|224946926|gb|EEG28135.1| hypothetical protein CORMATOL_00184 [Corynebacterium matruchotii ATCC 33806] Length = 925 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD++R +R +R+ +ID + +NALLK +EEPP ++FI + Sbjct: 24 VDDMRELRDRAMFAPAESRYRIFIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPE 83 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALE 199 ++ TIRSR F L+ + LE Sbjct: 84 KVIGTIRSRTHHYPFRLLTPQAMRGLLE 111 >gi|167518313|ref|XP_001743497.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778596|gb|EDQ92211.1| predicted protein [Monosiga brevicollis MX1] Length = 384 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D VD M A AL +++E F L + S I+ I+SRC +++ Sbjct: 162 GRHKIVILDEVDSMTPTAQQALRRTIELYSNTTRFALACNTSEKIIDPIQSRCTILRYTR 221 Query: 189 LSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L++ + K L + KI+ DS + + A G + +AI L Sbjct: 222 LTDAQVLKRLIDVCQAEKIVQLDSGLEALIFTAEGDMRQAINNLQ 266 >gi|149063103|gb|EDM13426.1| replication factor C (activator 1) 2, isoform CRA_c [Rattus norvegicus] Length = 233 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G ++I++D D M A AL +++E + F L +AS I+ I+SRC Sbjct: 7 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV 66 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +++ L++ + L +E+ K+ D + + A G + +A+ L Sbjct: 67 LRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 116 >gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 314 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 42/71 (59%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 74 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 133 Query: 191 ENNLYKALEQL 201 ++N K LE++ Sbjct: 134 QSNAKKRLEEI 144 >gi|152992054|ref|YP_001357775.1| DNA polymerase III, delta' subunit [Sulfurovum sp. NBC37-1] gi|151423915|dbj|BAF71418.1| DNA polymerase III, delta' subunit [Sulfurovum sp. NBC37-1] Length = 205 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 27/40 (67%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 N LLK +EEPP K FILI+ + TILSTIRSR + N Sbjct: 74 NKLLKVIEEPPTKKEFILITPSKATILSTIRSRLPIVILN 113 >gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus] Length = 342 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 61/305 (20%), Positives = 119/305 (39%), Gaps = 50/305 (16%) Query: 2 IDRA--FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 +DR + P L H DI + ++ R+ H LL+ G G GK + A + Sbjct: 22 LDRVEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLY 80 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-- 117 ++ +F + LN + +D +R Sbjct: 81 KDKEFGS----------------------------MVLELNASDDRG-----IDIVRGPI 107 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 + + + T ++++++D D M ++A NAL + +E+ + F LI + I+ + Sbjct: 108 LSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 167 Query: 178 RSRCLSIKFNSLSEN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +SRC +F L+ L +E+ K+ + D + + +++ G + RA+ IL Sbjct: 168 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVYVSEDGMKALITLSS-GDMRRALNILQSTN 226 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + ++ + I D +L+QD A+ ++E K+ K AL Sbjct: 227 MAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNIMEL------KTVKGLALH 280 Query: 293 GQLEE 297 L E Sbjct: 281 DILTE 285 >gi|323942568|gb|EGB38735.1| DNA polymerase III [Escherichia coli E482] Length = 270 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%) Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 + S L+P + K + + VD +R + L+ A G +V+ + + AANALLK+ Sbjct: 8 HASRLLHPGSRKRKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKT 67 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRC 181 LEEPP + F L + +L+T+RSRC Sbjct: 68 LEEPPAETWFFLATREPERLLATLRSRC 95 >gi|330444526|ref|YP_004377512.1| DNA-directed DNA polymerase III chain [Chlamydophila pecorum E58] gi|328807636|gb|AEB41809.1| DNA-directed DNA polymerase III chain [Chlamydophila pecorum E58] Length = 292 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 +GK R + ++D R I+ + + ++V +I+ D M +A +A LK LEEPP + Sbjct: 71 SGKGR-LHSIDLAREIKKDIWIPPFEASYKVYIIEEADRMTLSAISAFLKVLEEPPHHAI 129 Query: 163 FILISHASPTILSTIRSRCLSI 184 IL S + +TI SR L + Sbjct: 130 LILTSTKPQRLPATILSRTLGV 151 >gi|224541622|ref|ZP_03682161.1| hypothetical protein CATMIT_00793 [Catenibacterium mitsuokai DSM 15897] gi|224525460|gb|EEF94565.1| hypothetical protein CATMIT_00793 [Catenibacterium mitsuokai DSM 15897] Length = 319 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +D I+ + S N G +V ++ +D A N+LLK LEEP ++V IL + Sbjct: 88 IDHIQE-EFVKSSVENNG--KVYILKNIDNATTQAMNSLLKFLEEPVEEVYAILTTKNIN 144 Query: 172 TILSTIRSRCLSIKFNSLSENNL 194 +L TI+SRC IK S+++L Sbjct: 145 KVLPTIQSRCQVIKLLPESKHSL 167 >gi|325182836|emb|CCA17291.1| replication factor C subunit 3 putative [Albugo laibachii Nc14] Length = 352 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 99 LNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP + + V E+ + +Y L+ T ++V+++ VD ++++A +AL +++E+ Sbjct: 95 MNPSDADNQDRLIVQEVLKEIAQYHLADTKAKKPFKVVLLMEVDRLSKHAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 IL ++S I+ +RSRCL I ++ + + LE + Sbjct: 155 YTATCRLILCCNSSSKIIEPLRSRCLGICVSAPTNREICNVLESV 199 >gi|323359076|ref|YP_004225472.1| DNA polymerase III, gamma/tau subunits [Microbacterium testaceum StLB037] gi|323275447|dbj|BAJ75592.1| DNA polymerase III, gamma/tau subunits [Microbacterium testaceum StLB037] Length = 936 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 13/198 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + + L S R+ HA LF G +G GK T A + Sbjct: 7 RRYRPQAFGEMIGQSQVTEPLMTALRSDRVGHAYLFSGPRGCGKTTSARILARCLNCAAG 66 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C D C + + S +L + S N VD+ R +R Sbjct: 67 PTDTPCGTC--DSCV-ELGRGGSGSLDVVEIDAASHN----------GVDDARDLRERAI 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++ ++D + + NALLK +EEPP V FI + +L TIRSR Sbjct: 114 FAPARDRFKIFILDEAHMVTQQGFNALLKLVEEPPAHVKFIFATTEPEKVLGTIRSRTHH 173 Query: 184 IKFNSLSENNLYKALEQL 201 F + + + +++L Sbjct: 174 YPFRLVPPAAMLEYVQEL 191 >gi|20093446|ref|NP_613293.1| replication factor C (ATPase involved in DNA replication) intein containing [Methanopyrus kandleri AV19] gi|42559498|sp|Q8TZC4|RFCS_METKA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Mkn RFC intein gi|19886265|gb|AAM01223.1| Replication factor C (ATPase involved in DNA replication) intein containing [Methanopyrus kandleri AV19] Length = 635 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + R++ AL + +E FIL ++ S I+ I+SRC+ KF L Sbjct: 414 FKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLP 473 Query: 191 ENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 E+ + + L ++ + G + D + Y G + RAI +L Sbjct: 474 ESAIKERLRKIAESEGVEITEDALDAIVYVSEGDMRRAINVLQ 516 >gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus] gi|30913281|sp|Q9D0F6|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName: Full=Activator 1 36 kDa subunit; Short=A1 36 kDa subunit; AltName: Full=Activator 1 subunit 5; AltName: Full=Replication factor C 36 kDa subunit; Short=RF-C 36 kDa subunit; Short=RFC36 gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus] gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus] gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus] gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus] Length = 339 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 33 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 85 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 118 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 119 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 178 Query: 192 NNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + + D + V +++ G + RA+ IL + ++ Sbjct: 179 ELMVPRLEHVVQEENVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 237 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ ++E K+ K AL L E + ++ Sbjct: 238 TGHPLKTDIANILDWMLNQDFTTAYKNIMEL------KTLKGLALHDILTEVHLFVHRVD 291 Query: 306 FSLVKRVHAFS 316 F R+H + Sbjct: 292 FPSSVRIHLLT 302 >gi|296111515|ref|YP_003621897.1| DNA polymerase III, delta prime subunit [Leuconostoc kimchii IMSNU 11154] gi|295833047|gb|ADG40928.1| DNA polymerase III, delta prime subunit [Leuconostoc kimchii IMSNU 11154] Length = 308 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%) Query: 101 PKTG-----KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 PK+G W+ VD+IR ++ + A +V + D V+ ++ + NALLK +E Sbjct: 81 PKSGIGTNRTWK----VDQIRALKPEFATVAQESARKVFIFDAVESLHAESGNALLKFIE 136 Query: 156 EPPQKVLFILISHASPTILSTIRSRC 181 EP + +++ +L TIRSR Sbjct: 137 EPTGPQVIFMLAENINEVLPTIRSRA 162 >gi|256028169|ref|ZP_05442003.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium sp. D11] gi|289766102|ref|ZP_06525480.1| ATPase and helicase [Fusobacterium sp. D11] gi|289717657|gb|EFD81669.1| ATPase and helicase [Fusobacterium sp. D11] Length = 289 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFILKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|34762386|ref|ZP_00143388.1| ATPases and helicase subunits involved in DNA replication [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887968|gb|EAA25034.1| ATPases and helicase subunits involved in DNA replication [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 289 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFILKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|295698603|ref|YP_003603258.1| DNA polymerase III delta' subunit [Candidatus Riesia pediculicola USDA] gi|291157328|gb|ADD79773.1| DNA polymerase III delta' subunit [Candidatus Riesia pediculicola USDA] Length = 330 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 13/148 (8%) Query: 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 ++LF G+G L + + ++ F + +CN C + M S DF Sbjct: 26 SILFHSNSGLGSDLLIYAISRWMMCRKHFG---IMICNK--CRN-CRMMLSGVHPDF--- 76 Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 Y LN T + I V++IR I L +N + R+I I + + + A +L+K+LE Sbjct: 77 -YRLN--TSEKGNSIGVEQIREINKVLHHHSNYNFVRIIWIRNIQYLTKEARYSLIKTLE 133 Query: 156 E-PPQKVLFILISHASPTILSTIRSRCL 182 +K F L S + LS++RS+C+ Sbjct: 134 NFSEKKTYFFLESSQAIFNLSSLRSKCI 161 >gi|260495813|ref|ZP_05815934.1| ATPase and helicase [Fusobacterium sp. 3_1_33] gi|260196660|gb|EEW94186.1| ATPase and helicase [Fusobacterium sp. 3_1_33] Length = 289 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFVLKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|23271821|gb|AAH23674.1| Rfc5 protein [Mus musculus] Length = 333 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 27 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 78 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 79 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 112 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 113 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 172 Query: 192 NNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + + D + V +++ G + RA+ IL + ++ Sbjct: 173 ELMVPRLEHVVQEENVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 231 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ ++E K+ K AL L E + ++ Sbjct: 232 TGHPLKTDIANILDWMLNQDFTTAYKNIMEL------KTLKGLALHDILTEVHLFVHRVD 285 Query: 306 FSLVKRVHAFS 316 F R+H + Sbjct: 286 FPSSVRIHLLT 296 >gi|242310649|ref|ZP_04809804.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT 98-5489] gi|239523047|gb|EEQ62913.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT 98-5489] Length = 213 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++I+I + N A NALLK LEEPP++V FIL + +L TIRSR Sbjct: 58 KIILI-AANAFNIYAQNALLKILEEPPKQVYFILFAKMKSQLLPTIRSR 105 >gi|237741370|ref|ZP_04571851.1| ATPase and helicase [Fusobacterium sp. 4_1_13] gi|256846541|ref|ZP_05551998.1| DNA polymerase III, delta' subunit [Fusobacterium sp. 3_1_36A2] gi|229430902|gb|EEO41114.1| ATPase and helicase [Fusobacterium sp. 4_1_13] gi|256718310|gb|EEU31866.1| DNA polymerase III, delta' subunit [Fusobacterium sp. 3_1_36A2] Length = 289 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFILKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C (activator 1) 5, 36.5kDa [Equus caballus] Length = 340 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 62/311 (19%), Positives = 123/311 (39%), Gaps = 49/311 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + V +++ G + RA+ IL + ++ Sbjct: 180 ELMVPRLQHVVEEEKVAISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 238 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQIY 305 + I D +L+QD A+ + E K+ K AL L E + ++ Sbjct: 239 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTEIHLFVHRVD 292 Query: 306 FSLVKRVHAFS 316 F R+H + Sbjct: 293 FPTSVRIHLLT 303 >gi|148687477|gb|EDL19424.1| replication factor C (activator 1) 2, isoform CRA_b [Mus musculus] Length = 233 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G ++I++D D M A AL +++E + F L +AS I+ I+SRC Sbjct: 7 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV 66 Query: 184 IKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +++ L++ L +E+ K+ D + + A G + +A+ L Sbjct: 67 LRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 116 >gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool] Length = 347 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Query: 111 TVDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T+D IR ++++F + G +++++D VD M A AL + +E+ F L Sbjct: 104 TIDVIREKVKHFAKEKRDLPPGRHKIVILDEVDAMTEAAQQALRRIMEQFSDTTRFALAC 163 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 ++S +++ ++SRC ++F L + L + L Q+ M Sbjct: 164 NSSASVIEPLQSRCAILRFRKLDDAQLVRRLRQVCSM 200 >gi|326693441|ref|ZP_08230446.1| DNA polymerase III subunit delta' [Leuconostoc argentinum KCTC 3773] Length = 306 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 27/162 (16%) Query: 26 QYYCSGRMHHALLFEGEQGIGKATLGF-RYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 Q + ++ H LF G K L F RY ++ D +A +R+ D Sbjct: 22 QLIATNQLSHLYLFVGPSQPEK--LAFSRYLAWIMAGADERQA-IRIMADD--------- 69 Query: 85 ASHALHDFLYLSYSLNPKTGK-----WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPV 139 H + ++ PK+G W+ VD+IR ++ A +V + D + Sbjct: 70 -----HPDVKITQPSLPKSGTGTKRTWK----VDQIRALKPEFITVAQESQRKVFVFDAI 120 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + NALLK +EEP L I+++ +L TI+SR Sbjct: 121 ETLQAESGNALLKFIEEPAGPQLMIMLAENLNEVLPTIQSRA 162 >gi|226226518|ref|YP_002760624.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca T-27] gi|226089709|dbj|BAH38154.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca T-27] Length = 598 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 23/155 (14%) Query: 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNP 74 + L GR+ H L G +G GK TL R L P+ P C Sbjct: 23 VANTLKGAIARGRVAHGYLLCGPRGTGKTTLA-RVLAMALNCERRGEPELQGEPCGHCGS 81 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG--YWR 132 C + + A D + + + N VD+ R +R ++ A +G ++ Sbjct: 82 --CQ---RIWSGSASLDVVEIDAASN---------RGVDDARELRER-AMYAPSGDDRYK 126 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 V ++D + R A NALLK LEEPP +V+F+ + Sbjct: 127 VYIVDEAHMLTREAWNALLKILEEPPPRVVFVFAT 161 >gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus] gi|23813636|sp|Q9WUK4|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 40 kDa subunit; Short=A1 40 kDa subunit; AltName: Full=Activator 1 subunit 2; AltName: Full=Replication factor C 40 kDa subunit; Short=RF-C 40 kDa subunit; Short=RFC40 gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus] gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus] gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus] gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus] gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus] gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus] gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus] Length = 349 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ K+ D + + A G + +A Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQA 227 Query: 225 IKILH 229 + L Sbjct: 228 LNNLQ 232 >gi|328906727|gb|EGG26499.1| DNA polymerase III, subunit gamma and tau [Propionibacterium sp. P08] Length = 968 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 R + P + G + + + L + + R++HA LF G +G GK T A + Q Sbjct: 122 RRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCDQG 181 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + P C + +A + G VD+ R +R Sbjct: 182 PTLT--PCGKCQ------SCRDLACGGPGSIDVIEIDAASHGG-------VDDARDLRER 226 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 227 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 286 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIIS 237 F + L + L L G D + + A GSV ++ +L D+++ Sbjct: 287 HHYPFRLVPPKVLVEYLAGLCSKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 342 Query: 238 SYID 241 D Sbjct: 343 GAAD 346 >gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori] gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori] Length = 334 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 32/188 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI K ++Q+ ++ H LLF G G GK + A + FS Sbjct: 24 LVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTPQQFSSM------ 76 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 L L+ S + G R I + + + T ++ Sbjct: 77 ------------------VLELNASDDRGIGIVRGQI-------LSFASTRTIFKAGPKL 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M +A NAL + +E+ + V F +I + I+ ++SRC +F L ++ Sbjct: 112 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 171 Query: 194 LYKALEQL 201 + L+++ Sbjct: 172 IVPRLQEI 179 >gi|313681732|ref|YP_004059470.1| DNA polymerase iii delta prime subunit holb [Sulfuricurvum kujiense DSM 16994] gi|313154592|gb|ADR33270.1| putative DNA polymerase III delta prime subunit HolB [Sulfuricurvum kujiense DSM 16994] Length = 207 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A NALLK LEEPP+ ++FIL++ T L T+RSR LS+K Sbjct: 72 AQNALLKILEEPPRNIVFILLAPNKSTFLPTVRSR-LSLK 110 >gi|260890597|ref|ZP_05901860.1| DNA polymerase III, gamma and tau subunit [Leptotrichia hofstadii F0254] gi|260859642|gb|EEX74142.1| DNA polymerase III, gamma and tau subunit [Leptotrichia hofstadii F0254] Length = 403 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL--- 198 + + A NALLK+LEEPP V+FIL + I T+ SRC F + + ++ K L Sbjct: 2 LTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVISRCQRYDFLPIDKEDIKKLLKNV 61 Query: 199 -EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 E+ I D+ D + + GS + I + ID+ Sbjct: 62 AEKENIKIDDASLDLIYRKSEGSARDSFSIFEQVVSNFNNEEIDI 106 >gi|323698486|ref|ZP_08110398.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio sp. ND132] gi|323458418|gb|EGB14283.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio desulfuricans ND132] Length = 279 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 76 PCS--PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 PC P +Q+A A +D L+ G+ +I VD +R R + +RV Sbjct: 61 PCGQCPACRQIADLAFNDLLFFD-------GR-EGLIKVDSVREKRSTWGQPPHGDGYRV 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + AANALLKSLEEP +F+L + +L T+ SR + Sbjct: 113 TIFAEAQMFMTEAANALLKSLEEPRPGNVFVLAAPQRERLLETLVSRSWVVTL 165 >gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii] gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii] Length = 326 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F LT G +V+++D D M A AL +++E F L + Sbjct: 86 IDVVRNKIKMFAQKKLTLPRGRHKVVILDEADSMTSGAQQALRRTMEIYSSSTRFGLACN 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F LSE ++ L Sbjct: 146 LSSQIIEPIQSRCAIVRFTRLSEQDILARL 175 >gi|145629286|ref|ZP_01785085.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 22.1-21] gi|144978789|gb|EDJ88512.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 22.1-21] Length = 343 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 ++R++ NALLK+LEEPP+ V F+L + + TI SRCL +L E + + L Sbjct: 2 LSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQHL 58 >gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus] gi|122131746|sp|Q05B83|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 subunit 2 gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus] gi|296472929|gb|DAA15044.1| replication factor C subunit 2 [Bos taurus] Length = 352 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ K+ D + + A G + +A Sbjct: 171 ASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQA 230 Query: 225 IKILH 229 + L Sbjct: 231 LNNLQ 235 >gi|297693133|ref|XP_002823878.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Pongo abelii] gi|297693135|ref|XP_002823879.1| PREDICTED: replication factor C subunit 5-like isoform 3 [Pongo abelii] Length = 319 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 59/291 (20%), Positives = 114/291 (39%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 13 LISHQDILSTIQKFIIEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 65 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 98 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 99 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 158 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + V +++ G + RA+ IL + ++ Sbjct: 159 ELMVPRLEHVVEEEKVDVSEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 217 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ + E K+ K AL L E Sbjct: 218 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTE 262 >gi|254302118|ref|ZP_04969476.1| possible DNA replication protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322310|gb|EDK87560.1| possible DNA replication protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 289 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFVLKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus] gi|81884071|sp|Q641W4|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 subunit C2 gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus] gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus norvegicus] Length = 349 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ + L +E+ K+ D + + A G + +A Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQA 227 Query: 225 IKILH 229 + L Sbjct: 228 LNNLQ 232 >gi|28200485|gb|AAO31691.1| DNA polymerase III gamma and tau subunits [Arthrospira platensis] Length = 768 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + + LE + Sbjct: 269 LSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAMATHLETI 328 >gi|227494434|ref|ZP_03924750.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226832168|gb|EEH64551.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 768 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 21/205 (10%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + R+ HA LF G +G GK T A + ++ P + P C ++A+ Sbjct: 11 ANRVTHAYLFSGPRGCGKTTSARILARCLNCVEGP--TDTPCGKCA------SCIELATG 62 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 + G VD+ R +R + ++V ++D + Sbjct: 63 GPGSLDVVEIDAASHNG-------VDDARELRERAAFAPARDRYKVFILDEAHMVTPQGF 115 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KI 203 NALLK +EEPP+ V F+ + ++ TIRSR F + + L L L +I Sbjct: 116 NALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPGDVLMPYLSSLCAAERI 175 Query: 204 MGWDSKRDFVKIAAYGSVARAIKIL 228 + V A GSV ++ +L Sbjct: 176 SVAEGVLPLVVRAGGGSVRDSLSVL 200 >gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus] Length = 340 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 221 >gi|237743814|ref|ZP_04574295.1| ATPase and helicase [Fusobacterium sp. 7_1] gi|229432845|gb|EEO43057.1| ATPase and helicase [Fusobacterium sp. 7_1] Length = 289 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDTVRDIIKKSYTSSHEGGAKVFVLKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus] gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus] gi|296478479|gb|DAA20594.1| replication factor C 5 [Bos taurus] Length = 316 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 58/291 (19%), Positives = 116/291 (39%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 33 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 85 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 118 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 119 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 178 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + + +++ G + RA+ IL + ++ Sbjct: 179 ELMVPRLEHVVEEEKVDISEDGMKALITLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 237 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ ++E K+ K AL L E Sbjct: 238 TGHPLKSDIANILDWMLNQDFTTAYRNIMEL------KTLKGLALHDILTE 282 >gi|126324700|ref|XP_001375103.1| PREDICTED: similar to Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit) [Monodelphis domestica] Length = 342 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 42/231 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + ++ R+ H LL+ G G GK + A + ++ +F+ Sbjct: 28 YRPQTLDELISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACARQLYKDKEFN 86 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLS 123 + L + + G +D +R + + + Sbjct: 87 S--------------------------MVLELNASDDRG-------IDIVRGPILSFAST 113 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC Sbjct: 114 RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR 173 Query: 184 IKFNSLSENNLYKALEQL----KI-MGWDSKRDFVKIAAYGSVARAIKILH 229 +F L+ + LE + K+ + D + V +++ G + RA+ IL Sbjct: 174 FRFGPLTPELMVPRLEHVIAEEKVDVSEDGMKALVTLSS-GDMRRALNILQ 223 >gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura] gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis] gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura] gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis] Length = 331 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 93 IDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDS 208 S I+ I+SRC ++F LS+ + L +++ W+S Sbjct: 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKL--IEVSKWES 190 >gi|315186285|gb|EFU20046.1| hypothetical protein SpithDRAFT_1296 [Spirochaeta thermophila DSM 6578] Length = 390 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 R + V +RRI + L+++ V++++ D + + NALLK LEEPP FIL+ Sbjct: 179 RDGVPVAMVRRILSSVHLSSSRTP-HVVIVEHADTLQEASRNALLKELEEPPAGTYFILL 237 Query: 167 SHASPTILSTIRSR 180 + I+ TI SR Sbjct: 238 TRRRTAIIPTILSR 251 >gi|209523005|ref|ZP_03271562.1| DNA polymerase III, subunits gamma and tau [Arthrospira maxima CS-328] gi|209496592|gb|EDZ96890.1| DNA polymerase III, subunits gamma and tau [Arthrospira maxima CS-328] Length = 768 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + + LE + Sbjct: 269 LSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAMATHLETI 328 >gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi] gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi] Length = 351 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 27/189 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H +I + + G++ H LL+ G G GK + A + N Sbjct: 26 LLSHTEIISTIQRLIDGGKLPHLLLY-GPPGTGKTSTVLAIAKKLFGN------------ 72 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT-VDEIRRIRYFLSLTANTGYWR 132 + L L+ S + R I + +++F + T + Sbjct: 73 -------------RLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M ++A AL +++E+ + V F LI + I+ ++SRC +F+ L ++ Sbjct: 120 LIILDEADQMTKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKH 179 Query: 193 NLYKALEQL 201 + LE++ Sbjct: 180 EVVSRLEEI 188 >gi|302835774|ref|XP_002949448.1| DNA replication factor C complex subunit 3 [Volvox carteri f. nagariensis] gi|300265275|gb|EFJ49467.1| DNA replication factor C complex subunit 3 [Volvox carteri f. nagariensis] Length = 355 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 19/191 (9%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ I L + +G H L F G G GK TL + P K V Sbjct: 18 HKQIADNLKKLVAAGDFPHTL-FYGPPGAGKKTLVMALL-RAIYGPGVEKIRVE------ 69 Query: 77 CSPFVKQMASHALH-DFLYLSYS----LNP----KTGKWRTVITVDEIRRIRYFLSLTAN 127 P+ ++ S L + +S S LNP ++ + ++ R R L + N Sbjct: 70 TKPWQIELPSRKLEVELTTISSSYHLELNPSDVGNNDRYVVQEIIKDMARNRP-LGVDGN 128 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G+ +V++++ VD ++R A L +++E+ +++ + ++ +RSRCL ++ Sbjct: 129 KGF-KVLVLNEVDRLSREAQQGLRRTMEKYSSACRIVMVCNNISKVMEPVRSRCLCVRVA 187 Query: 188 SLSENNLYKAL 198 + +++ + + L Sbjct: 188 APTDDQMMEVL 198 >gi|291567347|dbj|BAI89619.1| DNA polymerase III gamma/tau subunit [Arthrospira platensis NIES-39] Length = 767 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + + LE + Sbjct: 269 LSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAMATHLETI 328 >gi|226481347|emb|CAX73571.1| replication factor C [Schistosoma japonicum] Length = 230 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++++++D D M ++A NAL + +E+ + F LI + I+ I+SRC +F Sbjct: 32 GKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAP 91 Query: 189 LSENNLYKALEQLKI-MGWDSKRDFVKIA---AYGSVARAIKILH 229 L N++ L ++ G D VK A G + ++I +L Sbjct: 92 LKFNDVNLCLRKIATNEGVTLTDDGVKAIYQFASGDMRKSINLLQ 136 >gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens] gi|728777|sp|P40937|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName: Full=Activator 1 36 kDa subunit; Short=A1 36 kDa subunit; AltName: Full=Activator 1 subunit 5; AltName: Full=Replication factor C 36 kDa subunit; Short=RF-C 36 kDa subunit; Short=RFC36 gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens] gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens] gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens] gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens] gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct] Length = 340 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D IR + + + T + Sbjct: 86 ---------------------MVLELNASDDRG-----IDIIRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + V +++ G + RA+ IL + ++ Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 238 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ + E K+ K AL L E Sbjct: 239 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTE 283 >gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi] gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi] Length = 347 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 45/235 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H++I L + R+ H LLF G G GK + Sbjct: 21 YRPASLTELVSHQEITDTLMKLINENRLPH-LLFYGPPGTGKTSTIL------------- 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 A RM KQ++S L L+ S + G R I I + + T Sbjct: 67 -AAARMLYTS------KQLSSMVLE----LNASDDRGIGIVREQI-------INFAQTST 108 Query: 126 AN-----TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 N + ++I++D D M ++A +AL + +E+ V F +I + I+ I+SR Sbjct: 109 LNVDKNQSSVPKLIILDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSR 168 Query: 181 CLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 C ++F LS + L E L + D ++ + +A G + R I IL Sbjct: 169 CTRLRFAPLSNEQILPRLHHIVQVETLTVT-EDGQKALLNLAE-GDMRRVINILQ 221 >gi|12847419|dbj|BAB27561.1| unnamed protein product [Mus musculus] Length = 349 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ K+ D + + A G + +A Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQA 227 Query: 225 IKILH 229 + L Sbjct: 228 LNNLQ 232 >gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens] gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens] Length = 319 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 13 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 64 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D IR + + + T + Sbjct: 65 ---------------------MVLELNASDDRG-----IDIIRGPILSFASTRTIFKKGF 98 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 99 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 158 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + V +++ G + RA+ IL + ++ Sbjct: 159 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 217 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ + E K+ K AL L E Sbjct: 218 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTE 262 >gi|284050482|ref|ZP_06380692.1| DNA polymerase III subunit [Arthrospira platensis str. Paraca] Length = 767 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ A NALLK+LEEPP +V+F+L + +L TI SRC F + + LE + Sbjct: 269 LSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAMATHLETI 328 >gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens] Length = 340 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D IR + + + T + Sbjct: 86 ---------------------MVLELNASDDRG-----IDIIRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 221 >gi|109098912|ref|XP_001084022.1| PREDICTED: replication factor C subunit 5 isoform 3 [Macaca mulatta] Length = 340 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 221 >gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303] gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303] Length = 318 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 43/234 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L Y + + H LLF G G+GK A Sbjct: 18 IVGQGEAIKRLKSYISTNNLPH-LLFSGPPGVGKTAAAVAIA------------------ 58 Query: 74 PDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-W 131 K++ A H +F L+ S RT +I+ F + G + Sbjct: 59 --------KELFGDAWHQNFTELNASDERGIDVVRT--------KIKDFSKTSPIGGADF 102 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I +D D + +A +AL +++E FIL + S I+ I+SRC +F SLS Sbjct: 103 KIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSY 162 Query: 192 NNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 + K + EQ + + + +K + G + +AI L +I ID Sbjct: 163 EAVEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKAINALQ--ASALIDDVID 214 >gi|115655395|ref|XP_790650.2| PREDICTED: similar to replication factor C, 40-kDa subunit [Strongylocentrotus purpuratus] gi|115928698|ref|XP_001184083.1| PREDICTED: similar to replication factor C, 40-kDa subunit [Strongylocentrotus purpuratus] Length = 352 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A A+ +++E + F L + Sbjct: 110 IDVVRNKIKMFAQKKVTLPKGRHKIIILDEADSMTGAAQQAMRRTMEVFSKTTRFALACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 AS I+ I+SRC ++++ LS++ + K L Sbjct: 170 ASDKIIEPIQSRCAVLRYSRLSDSQILKRL 199 >gi|83319611|ref|YP_424010.1| DNA polymerase III, delta prime subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283497|gb|ABC01429.1| DNA polymerase III, delta prime subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 247 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGYWRV--IMIDPVDGMNRNAANALLKSLEEPPQKV 161 G VIT E+ + +SL+A G + +I + ++AAN+LLK LEEPP Sbjct: 73 GNNNLVITNQEVLNLINKMSLSA-IGKQNIKFFIIKNAQNLKQSAANSLLKFLEEPPINT 131 Query: 162 LFILISHASPTILSTIRSRC 181 IL+++ I++TI SRC Sbjct: 132 YGILLTNNYSEIINTIWSRC 151 >gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster] gi|1703054|sp|P53034|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 40 kDa subunit; Short=A1 40 kDa subunit; AltName: Full=Activator 1 subunit 2; AltName: Full=Replication factor C 40 kDa subunit; Short=RF-C 40 kDa subunit; Short=RFC40; AltName: Full=Replication factor C subunit 4; Short=DmRfc4 gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster] gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster] gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster] gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct] gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct] Length = 331 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 40/205 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G+ED LS + G + ++ G G+GK T + +L + Sbjct: 22 YRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTT-IQCLARILLGDSYK 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +A L + + + G +D +R +I+ F Sbjct: 80 EA--------------------------VLELNASNERG-------IDVVRNKIKMFAQQ 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 107 KVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCA 166 Query: 183 SIKFNSLSENNLYKALEQLKIMGWD 207 ++F LS+ + L +++ W+ Sbjct: 167 MLRFTKLSDAQVLAKL--IEVAKWE 189 >gi|297693131|ref|XP_002823877.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Pongo abelii] Length = 340 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFIIEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 86 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVDVSEDGMKALVTLSS-GDMRRALNILQ 221 >gi|157164770|ref|YP_001467149.1| DNA polymerase III subunit delta' [Campylobacter concisus 13826] gi|112801366|gb|EAT98710.1| DNA polymerase III subunit delta [Campylobacter concisus 13826] Length = 206 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ A NALLK +EEPP+ + FI+++ + +L TIRSR L Sbjct: 56 ILVIEAKSFRTEAQNALLKIIEEPPRNIKFIIVTQSKNLLLPTIRSRML 104 >gi|312372786|gb|EFR20672.1| hypothetical protein AND_19724 [Anopheles darlingi] Length = 335 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++I++D D M +A NAL + +E+ + V F +I + I+ I+SRC +F Sbjct: 114 GGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAP 173 Query: 189 LSENNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILH 229 L + LE ++ G ++ D K A G + + + +L Sbjct: 174 LGVEQILPRLEHVIEAEGIEATEDGKKALITLAGGDMRKVLNVLQ 218 >gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517] gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517] Length = 416 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 16/222 (7%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A +Y S + ++ +I S + G +++ Sbjct: 120 DRGIDVVREQIKTFASTSLVYKGRS---EAESLTAIVGTKQI--FSTAPSSGSGLGAFKL 174 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 175 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKD 234 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + E+++I D+ VK+ + G + RA+ +L Sbjct: 235 IRRLVDTVIETEEVQIQP-DAIDSLVKL-SKGDMRRALNVLQ 274 >gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis] gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis] Length = 336 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +VI++D D M A AL +++E + F L + Sbjct: 96 IDVVRNKIKMFAQKKVTLPPGKHKVIILDEADSMTEGAQQALRRTMEIYSKTTRFALACN 155 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 156 TSDKIIEPIQSRCAVVRFSRLSDAQVLAKL 185 >gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens] gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct] Length = 337 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D IR + + + T + Sbjct: 86 ---------------------MVLELNASDDRG-----IDIIRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 221 >gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] Length = 322 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 42/197 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ G M H LLF G G GK T+ Sbjct: 13 RSFDEVVDL-----EEVKARLREFVRGGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I+SR Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRT 152 Query: 182 LSIKFNSLSENNLYKAL 198 + I+F+ L + ++ L Sbjct: 153 VMIRFSPLPKEAVFARL 169 >gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A] gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A] Length = 387 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 141 FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 200 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 201 QGNAKKRLEEI 211 >gi|319760532|ref|YP_004124470.1| DNA polymerase III subunit delta [Candidatus Blochmannia vafer str. BVAF] gi|318039246|gb|ADV33796.1| DNA polymerase III subunit delta [Candidatus Blochmannia vafer str. BVAF] Length = 342 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 RV+ I ++ +N + N LLK +EEPP F L + I +TIRSRC+ Sbjct: 112 RVVFIKYIEYLNAESVNLLLKIIEEPPINTYFFLKTREYMYIPATIRSRCM 162 >gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 340 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M +A NAL + +E+ V F +I + I+ I+SRC +F Sbjct: 110 GGVKLIILDEADAMTHDAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAP 169 Query: 189 LSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L + L EQ KI D + V G + + + IL Sbjct: 170 LDSKEILPRLEYVIEQEKIKISDDGKQAVLTLGQGDMRKVLNILQ 214 >gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus] gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus norvegicus] gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus] Length = 338 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 58/291 (19%), Positives = 113/291 (38%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 32 LISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 83 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 84 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKRGF 117 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 118 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 177 Query: 192 NNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE + + D + V +++ G + RA+ IL + ++ Sbjct: 178 ELMVPRLEHVVQEENVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 236 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ ++E K+ K AL L E Sbjct: 237 TGHPLKTDIANILDWMLNQDFTTAYKNIMEL------KTLKGLALHDILTE 281 >gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium castaneum] Length = 344 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 38/189 (20%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G+ED LS G + + L+ G G+GK T A +L P F Sbjct: 32 YRPQTFQEIVGNEDTTNRLSVIAKQGNLPN-LIIAGPPGVGKTTTILCLA-RILLGPAFK 89 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 A + + +A +D +D +R +I+ F Sbjct: 90 DAVLEL---------------NASNDR------------------GIDVVRNKIKMFAQQ 116 Query: 124 -LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G ++I++D VD M A AL +++E F L + S ++ I+SRC Sbjct: 117 KVTLPPGRHKIIILDEVDSMTEGAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCA 176 Query: 183 SIKFNSLSE 191 ++++ L++ Sbjct: 177 ILRYSRLTD 185 >gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans] gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans] Length = 331 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 40/205 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G+ED LS + G + ++ G G+GK T + +L + Sbjct: 22 YRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTT-IQCLARILLGDSYK 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +A L + + + G +D +R +I+ F Sbjct: 80 EA--------------------------VLELNASNERG-------IDVVRNKIKMFAQQ 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 107 KVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCA 166 Query: 183 SIKFNSLSENNLYKALEQLKIMGWD 207 ++F LS+ + L +++ W+ Sbjct: 167 MLRFTKLSDAQVLAKL--IEVAKWE 189 >gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] gi|42559513|sp|Q8ZYK4|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] Length = 329 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+FD V + E+++ L ++ +G M H LLF G G GK T+ Sbjct: 13 RSFDEVVD-----LEEVKARLREFVKAGNMPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I SRC Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRC 152 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIA---AYGSVARAIKILH 229 +F+ + + + + L+ + K G + + D + + + G + +AI +L Sbjct: 153 AVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQ 204 >gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980] gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980 UF-70] Length = 390 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 26/190 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH+DI ++++ + R+ H LLF G G GK + A + Sbjct: 51 YRPDTLEDVSGHQDILATINKFVDTNRLPH-LLFYGPPGTGKTSTILALARRIY------ 103 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSL 124 P M +QM L L+ S + R I T ++I S Sbjct: 104 -GPKNM----------RQM-------VLELNASDDRGIEVVREQIKTFASTKQIFSMNSA 145 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T + G +++I++D D M A AL + +E+ F +I++ + + + SRC Sbjct: 146 TVSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRF 205 Query: 185 KFNSLSENNL 194 +F+ L E+++ Sbjct: 206 RFSPLKESDI 215 >gi|119962449|ref|YP_946470.1| DNA polymerase III subunits gamma and tau [Arthrobacter aurescens TC1] gi|119949308|gb|ABM08219.1| DNA polymerase III, subunits gamma and tau [Arthrobacter aurescens TC1] Length = 1028 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 17/172 (9%) Query: 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHAL 89 R++HA LF G +G GK T R L + ++ P PC P ++A Sbjct: 8 RVNHAYLFSGPRGCGK-TTSARILARCL---NCAEGPTDT----PCGKCPSCIELARGGS 59 Query: 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 + G VD+ R +R + +++ +ID + NA Sbjct: 60 GSLDVIEIDAASHGG-------VDDARDLRERATFAPVRDRYKIFIIDEAHMVTSAGFNA 112 Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LLK +EEPP+ + FI + ++ TIRSR F + L + LE L Sbjct: 113 LLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEPLMQYLELL 164 >gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1] Length = 325 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 59/283 (20%), Positives = 122/283 (43%), Gaps = 60/283 (21%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P ++G +D+ + + ++ GR+ H LLF G G GK + A + + Sbjct: 12 YRPAKLDDVYGQKDVVQTVRKFAKEGRIPH-LLFYGPPGTGKTSTIIALAREL-----YG 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 K ++ + LN + +D +R +I+ F S Sbjct: 66 K------------------------NYRNMVLELNASDDRG-----IDVVRDQIKNFAST 96 Query: 125 TA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 N+G+ ++I++D D M+ A NAL + +E+ + F ++++ S + + SRC Sbjct: 97 RQIFNSGF-KLIILDEADAMSNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCT 155 Query: 183 SIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F+ L+++ L + E LKI D+++ ++++ G + RA+ +L C + Sbjct: 156 RFRFSPLADSALQDRVDYVIKAEGLKIAS-DARQSLLELSE-GDMRRALNVLQA-CATAV 212 Query: 237 SSYIDL--------IHIPRQEYALQKMQQIADELLSQDQKIAF 271 S ++ + PR Q + + D ++S D A+ Sbjct: 213 ESGEEITQDMVYECVGAPRP----QSVMTVLDAIMSNDWTDAY 251 >gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana) tropicalis] gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis] Length = 345 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 168 ASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQA 227 Query: 225 IKILH 229 + L Sbjct: 228 LNNLQ 232 >gi|320451407|ref|YP_004203503.1| DNA polymerase III subunit delta' [Thermus scotoductus SA-01] gi|320151576|gb|ADW22954.1| DNA polymerase III delta prime subunit [Thermus scotoductus SA-01] Length = 269 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 53/294 (18%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P + GHE + + L + S LLF G +G+G+ + YA + N F Sbjct: 2 ALHPPDPWGIIGHEAVLELLPRLGAS-----TLLFSGPEGVGRRLVARWYAWGL--NRGF 54 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG-KWRTVITVDEIRRIRYFLS 123 P P + H D L + P+ G K R I ++E+ + + + Sbjct: 55 ---------PPPA------LGEHP--DLLEIG---PPERGLKGRVEIRLEEVEPLFDWFA 94 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T +V ++D + AANALLK LEEPP +LI+ + T+L T+ SR L Sbjct: 95 -THPRERVKVAILDAAHLLTEAAANALLKLLEEPPSYGRIVLIAPSRATLLPTLASRALE 153 Query: 184 IKFNSLSENNLYKALEQLKIMGW--DSKRDFVKIAAYGSVARA----------------- 224 + F + E LY + +++ + + ++ A + RA Sbjct: 154 VAFAPVPEERLYPLTQDPELLAYAGGAPGRLLRALADPTAFRARMEKAREVGGASSWRRF 213 Query: 225 --IKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDF 273 +K L D + I + Y H P+ AL+ ++ + +S D ++A D Sbjct: 214 ALLKELFADEEGIFALYAAFRHRPQALLALEAAREALERYVSPDLVLARLALDL 267 >gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia] gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia] Length = 331 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 40/205 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G+ED LS + G + ++ G G+GK T + +L + Sbjct: 22 YRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTT-IQCLARILLGDSYK 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +A L + + + G +D +R +I+ F Sbjct: 80 EA--------------------------VLELNASNERG-------IDVVRNKIKMFAQQ 106 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 107 KVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCA 166 Query: 183 SIKFNSLSENNLYKALEQLKIMGWD 207 ++F LS+ + L +++ W+ Sbjct: 167 MLRFTKLSDAQVLAKL--IEVAKWE 189 >gi|269214659|ref|ZP_06158724.1| DNA polymerase III, subunit gamma and tau [Neisseria lactamica ATCC 23970] gi|269209322|gb|EEZ75777.1| DNA polymerase III, subunit gamma and tau [Neisseria lactamica ATCC 23970] Length = 578 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS----ENNLYKA 197 ++++A NA+LK+LEEPP+ V FIL + + T+ SRCL +++ ++L Sbjct: 2 LSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHV 61 Query: 198 LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L+ KI + + AA GS+ A+ +L Sbjct: 62 LDSEKIAYEPAALQLLGRAAAGSMRDALSLL 92 >gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa] Length = 366 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 141 FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 200 Query: 191 ENNLYKALEQL 201 + N K LE++ Sbjct: 201 QGNAKKRLEEI 211 >gi|224102151|ref|XP_002334208.1| predicted protein [Populus trichocarpa] gi|222870040|gb|EEF07171.1| predicted protein [Populus trichocarpa] Length = 180 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 A LK LEEPPQ+V+FI ++ + T++SRC FN + + ++ L ++ Sbjct: 4 AFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKI 56 >gi|255994226|ref|ZP_05427361.1| DNA polymerase III, delta prime subunit [Eubacterium saphenum ATCC 49989] gi|255993894|gb|EEU03983.1| DNA polymerase III, delta prime subunit [Eubacterium saphenum ATCC 49989] Length = 251 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G ++++I D M A N +LK LEEP + L++ +L TIRSRC+ +F+ Sbjct: 99 GDRKLLIISHSDLMTVRAQNRILKKLEEPSGDAVIALVTRTPDLMLDTIRSRCIEKRFD 157 >gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis] gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis] Length = 335 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 64/315 (20%), Positives = 123/315 (39%), Gaps = 47/315 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + ++ ++ H LLF G G GK + A + ++ +F+ Sbjct: 21 YRPQTLDELISHQDILSTIQRFISEDKLPH-LLFYGPPGTGKTSTILACAKQLYKDREFN 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLS 123 + LN + +D +R + + + Sbjct: 80 S----------------------------MVLELNASDDRG-----IDIVRGPVLSFAST 106 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC Sbjct: 107 RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR 166 Query: 184 IKFNSLSENNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILHYDCDKIISSY 239 +F LS + LE +K D D +K + G + R++ IL Sbjct: 167 FRFGPLSSEMMIPRLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYSKVT 226 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 D ++ + I D +L++D A+ ++E K+ K AL L E Sbjct: 227 EDTVYTCTGHPLRSDIANILDWMLNKDFTSAYKNIMEL------KTLKGLALHDILTEIH 280 Query: 300 -QIAQIYFSLVKRVH 313 + ++ F + R+H Sbjct: 281 LYVHRVDFPALVRIH 295 >gi|195434074|ref|XP_002065028.1| GK15241 [Drosophila willistoni] gi|194161113|gb|EDW76014.1| GK15241 [Drosophila willistoni] Length = 356 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + N +RVI++ D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEINGQREFRVIVVSEADELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 IL +++ I+ IRSRCL I+ + SE + L+ Sbjct: 155 YVATCRIILSVNSTSRIIPAIRSRCLGIRVAAPSETEIINILQ 197 >gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens] Length = 351 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 48 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 99 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D IR + + + T + Sbjct: 100 -------------------MVLELNASDDRG-------IDIIRGPILSFASTRTIFKKGF 133 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 134 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 193 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 194 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 235 >gi|328772230|gb|EGF82269.1| hypothetical protein BATDEDRAFT_16167 [Batrachochytrium dendrobatidis JAM81] Length = 353 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 90/199 (45%), Gaps = 10/199 (5%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NPD 63 + P+ +L H D K L Q S H L++ G G GK T R + Q P Sbjct: 8 YRPLSLDKLSYHPDTSKLLCQLANSDEFPHLLVY-GPSGAGKKT---RVTATLRQLFGPG 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 K + + +P +++ + + ++ + + G + +I + I+ + Sbjct: 64 VEKLKIETRQFE--TPSNRKLEINIVSSNYHVEITPS-DVGIYDRIIVQELIKEVAQTQQ 120 Query: 124 LTANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 L ++ ++V++++ D ++R+A L +++E+ + IL + + I+S IRSRCL Sbjct: 121 LDSSAKKQFKVVVLNEADSLSRDAQAGLRRTMEKYMGNMRMILCCNVTSKIISPIRSRCL 180 Query: 183 SIKFNSLSENNLYKALEQL 201 I+ + S + L+ + Sbjct: 181 LIRVAAPSFTEIQTVLQNV 199 >gi|224072550|ref|XP_002188696.1| PREDICTED: similar to replication factor C 5 [Taeniopygia guttata] Length = 329 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 10/171 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 108 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 167 Query: 191 ENNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + L+ ++ G D D +K + G + RA+ IL + ++ Sbjct: 168 PELMVPRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTC 227 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ ++E K+ K AL L E Sbjct: 228 TGHPLKSDIANILDWMLNQDFSTAYRKIMEL------KTLKGLALQDILTE 272 >gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51] gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51] Length = 382 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 202 Query: 191 ENNLYKALEQL 201 + N + LE++ Sbjct: 203 QGNARRRLEEI 213 >gi|300172671|ref|YP_003771836.1| DNA polymerase III subunit delta' [Leuconostoc gasicomitatum LMG 18811] gi|299887049|emb|CBL91017.1| DNA polymerase III, delta' subunit, putative [Leuconostoc gasicomitatum LMG 18811] Length = 306 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 9/86 (10%) Query: 101 PKTGK-----WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 PK+G W+ VD+IR ++ A +V + D V+ ++ + NALLK +E Sbjct: 81 PKSGTGTNRTWK----VDQIRALKPEFVTVAQESTRKVFVFDAVETLHAESGNALLKFIE 136 Query: 156 EPPQKVLFILISHASPTILSTIRSRC 181 EP L ++++ +++TI+SR Sbjct: 137 EPTGPQLIVMLAENINEVMTTIQSRA 162 >gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis IC-167] Length = 318 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 59/239 (24%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F PV L E ++ L ++ G + H LLF G G+GK T Sbjct: 4 FRPVRLVDLVDQEGVKVGLMEFVRRGDLPH-LLFYGPPGVGKTT---------------- 46 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI---------TVDEIR 116 A+ AL LY WR+ + +D IR Sbjct: 47 -------------------AALALARELY--------GDSWRSSVLELNASDERGIDVIR 79 Query: 117 RIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + T TG ++++++D D M +A AL + +E FIL+++ I+ Sbjct: 80 EKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYISGII 139 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILH 229 I+SRC +FN L + + + L Q+ K G + D ++ + G + +AI L Sbjct: 140 EPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQ 198 >gi|73995285|ref|XP_534696.2| PREDICTED: similar to replication factor C 5 isoform 1 [Canis familiaris] Length = 410 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 13/192 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 189 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 248 Query: 191 ENNLYKALEQL----KI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 + LE + K+ + D + V +++ G + RA+ IL + ++ Sbjct: 249 PELMVPRLEHVVGEEKVDLSEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYT 307 Query: 246 PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ-IAQI 304 + I D +L+QD A+ ++E K+ K AL L E + ++ Sbjct: 308 CTGHPLKSDIANILDWMLNQDFTTAYRNIMEL------KTLKGLALHDILTEIHLFVHRV 361 Query: 305 YFSLVKRVHAFS 316 F RVH + Sbjct: 362 DFPSSVRVHLLT 373 >gi|223889380|ref|ZP_03623966.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|223885066|gb|EEF56170.1| conserved hypothetical protein [Borrelia burgdorferi 64b] Length = 348 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|15595110|ref|NP_212899.1| hypothetical protein BB0765 [Borrelia burgdorferi B31] gi|216264678|ref|ZP_03436670.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221217988|ref|ZP_03589455.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224533273|ref|ZP_03673867.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225548935|ref|ZP_03769912.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225550045|ref|ZP_03771006.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|2688709|gb|AAC67118.1| predicted coding region BB0765 [Borrelia burgdorferi B31] gi|215981151|gb|EEC21958.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221192294|gb|EEE18514.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224513438|gb|EEF83795.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369504|gb|EEG98956.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370538|gb|EEG99974.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312148472|gb|ADQ31131.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 348 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis] Length = 335 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 36/190 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ ++ H LLF G G GK + A + ++ +F+ Sbjct: 28 LISHKDILSTIQRFISEDKLPH-LLFYGPPGTGKTSTILACARQLYRDKEFNS------- 79 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 80 ---------------------MVLELNASDDRG-----IDVVRGPILSFASTRTIFKKGF 113 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS Sbjct: 114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSP 173 Query: 192 NNLYKALEQL 201 + + LE + Sbjct: 174 DQMVPRLEHV 183 >gi|225551775|ref|ZP_03772718.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371570|gb|EEH00997.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 348 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str. Silveira] Length = 398 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 31/254 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + Sbjct: 59 GHQDIIATINRFIESNRLPHLLLY-GPPGTGKTSTILALARQIY---------------- 101 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 VK + L ++ + +T + +I + +N G +++I+ Sbjct: 102 ----GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLII 157 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L E ++ Sbjct: 158 LDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIR 217 Query: 196 KAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + EQ++I D+ V++ + G + RA+ +L C S + L +PR + Sbjct: 218 VLVDQVIEKEQVRIQP-DAIDSLVRL-SKGDMRRALNVLQA-C-HASSMPLPLRDVPRDQ 273 Query: 250 YALQKMQQIADELL 263 ++ + I D+ + Sbjct: 274 QPAREPETITDDTI 287 >gi|195941585|ref|ZP_03086967.1| hypothetical protein Bbur8_01711 [Borrelia burgdorferi 80a] Length = 348 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|164656026|ref|XP_001729141.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966] gi|159103031|gb|EDP41927.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966] Length = 247 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/99 (22%), Positives = 57/99 (57%), Gaps = 1/99 (1%) Query: 104 GKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 G + ++ D ++ I + N +++++I+ D ++R+A AL +++E+ + + Sbjct: 9 GSYDRLVIQDILKEIAQTQQVDQNAARRFKMVVINEADSLSRDAQAALRRTMEKYMRNMR 68 Query: 163 FILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 IL ++++ I++ IRSRCL ++ + S+ ++ + L + Sbjct: 69 MILCANSTSRIIAPIRSRCLLLRVGAPSDEDMSRVLRHV 107 >gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167] gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167] Length = 348 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 59/239 (24%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F PV L E ++ L ++ G + H LLF G G+GK T Sbjct: 13 FRPVRLVDLVDQEGVKVGLMEFVRRGDLPH-LLFYGPPGVGKTT---------------- 55 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI---------TVDEIR 116 A+ AL LY WR+ + +D IR Sbjct: 56 -------------------AALALARELY--------GDSWRSSVLELNASDERGIDVIR 88 Query: 117 RIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + T TG ++++++D D M +A AL + +E FIL+++ I+ Sbjct: 89 EKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYISGII 148 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILH 229 I+SRC +FN L + + + L Q+ K G + D ++ + G + +AI L Sbjct: 149 EPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQ 207 >gi|170017861|ref|YP_001728780.1| ATPase involved in DNA replication [Leuconostoc citreum KM20] gi|169804718|gb|ACA83336.1| ATPase involved in DNA replication [Leuconostoc citreum KM20] Length = 311 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 101 PKTGKW-RTVITVDEIRRIR-YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 PK+G + VD+IR ++ F++++ + +V + D ++ + A NALLK +EEP Sbjct: 81 PKSGSGTKRTWKVDQIRSLKPEFITMSRESPR-KVFVFDAIETLQAEAGNALLKYIEEPA 139 Query: 159 QKVLFILISHASPTILSTIRSRC 181 L ++++ IL TI+SR Sbjct: 140 GPQLMVMLAENVNDILPTIKSRA 162 >gi|268679999|ref|YP_003304430.1| DNA polymerase III delta prime subunit HolB [Sulfurospirillum deleyianum DSM 6946] gi|268618030|gb|ACZ12395.1| putative DNA polymerase III delta prime subunit HolB [Sulfurospirillum deleyianum DSM 6946] Length = 208 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 28/38 (73%) Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP+ ++FI+++ + +L TIRSR + Sbjct: 74 EAQNALLKILEEPPRHIIFIVVAPSKTALLPTIRSRLV 111 >gi|91089203|ref|XP_966829.1| PREDICTED: similar to replication factor C subunit 3 [Tribolium castaneum] gi|270012468|gb|EFA08916.1| hypothetical protein TcasGA2_TC006622 [Tribolium castaneum] Length = 354 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ +D I+ + L ANT ++VI++ VD + ++A +AL +++E+ Sbjct: 94 VNPSDVGINDRVVIMDVIKNVAQSQQLNANTQREFKVILLTDVDNLTKDAQHALRRTMEK 153 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL + + ++ IRSRCL I+ + S +++ L Sbjct: 154 YIANCRIILCTTSISRVIPAIRSRCLCIRVPAPSIDDITSIL 195 >gi|307106826|gb|EFN55071.1| hypothetical protein CHLNCDRAFT_35851 [Chlorella variabilis] Length = 354 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 15/181 (8%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H D+ L + +G H L F G G GK TL + P K V Sbjct: 18 HSDVADNLRKLVVNGDCPHTL-FYGPPGAGKKTLILALLREIY-GPGVEKLKVE------ 69 Query: 77 CSPFVKQMASHALH-DFLYLSYS----LNPKTGKWRTVITVDEIRRIRYFLSLTANTGY- 130 C P+ ++ S ++ +F +S + +NP R V EI + G Sbjct: 70 CKPWKIKLPSSSIDLEFTTISSAYHVEMNPSDVGNRDRYVVQEIIKEMAKSRPIGTDGQR 129 Query: 131 -WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V++++ VD +++ A ++L +++E+ +L + ++ +RSRCL I+ + Sbjct: 130 SFKVLVLNEVDQLSKEAQHSLRRTMEKYSAACRLVLCGNNVSKVIDPVRSRCLCIRVAAP 189 Query: 190 S 190 S Sbjct: 190 S 190 >gi|255321404|ref|ZP_05362564.1| DNA polymerase III subunit delta [Campylobacter showae RM3277] gi|255301557|gb|EET80814.1| DNA polymerase III subunit delta [Campylobacter showae RM3277] Length = 206 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 A N+LLK +EEPP+ + FI+ + +L T+RSR ++EN L K +Q + G Sbjct: 68 AQNSLLKIIEEPPKNIFFIIACESKNMLLPTVRSRL-------VTENRLEK--KQREKTG 118 Query: 206 WDSKR-DFVKIAAY----GSVARAIKILHYDCDKIISS 238 D KR + +I A+ ++ R+ K+ D ++I++ Sbjct: 119 LDYKRLELKEICAFIDEKSALERSEKLGKNDLKELIAA 156 >gi|218249910|ref|YP_002375263.1| hypothetical protein BbuZS7_0793 [Borrelia burgdorferi ZS7] gi|224532584|ref|ZP_03673206.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226321464|ref|ZP_03796991.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|218165098|gb|ACK75159.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|224512440|gb|EEF82819.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226233260|gb|EEH32012.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 348 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|302822922|ref|XP_002993116.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii] gi|300139007|gb|EFJ05756.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii] Length = 220 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 80/200 (40%), Gaps = 15/200 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P + + G + + L GR+ LF G +G GK + A + Sbjct: 2 LSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAAL--- 58 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V + + PC + + L L S + K + + ++++ Sbjct: 59 -----NCVSVEDTRPCGVCRECL-------LLCLGKSGDVKEVDVASHDSTSLMKKLLMD 106 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++G ++V +ID + N LK LEEPP+ +FIL + + + +RC Sbjct: 107 AVVGPSSGRYKVFIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRC 166 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + ++++ L+ L Sbjct: 167 QKFHFPKIKDSDVVSRLQAL 186 >gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris gallopavo] Length = 360 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 119 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 178 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L+++ L K +E+ + D + + A G + +A Sbjct: 179 ASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQA 238 Query: 225 IKILH 229 + L Sbjct: 239 LNNLQ 243 >gi|149458861|ref|XP_001516769.1| PREDICTED: similar to replication factor C/activator 1 subunit, partial [Ornithorhynchus anatinus] Length = 407 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 166 IDVVRNKIKMFAQQKVTLPRGRHKIIVLDEADSMTDGAQQALRRTMEIYSKTTRFALACN 225 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L K +E+ + D + + A G + +A Sbjct: 226 ASDKIIEPIQSRCAVLRYTKLTDAQVLARLLKVIEKEDVPHSDDGLEAIVFTAQGDMRQA 285 Query: 225 IKILH 229 + L Sbjct: 286 LNNLQ 290 >gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi] Length = 328 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 20/129 (15%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F L+ + Sbjct: 106 KVKTFAQLTASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCN 165 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL------EQLKIMGWDSK--RDFVKIAAYGS 220 I+ I SRC +F L E + + L EQ+ + D +D V I+ G Sbjct: 166 YVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTV---DEAVYKDIVDISG-GD 221 Query: 221 VARAIKILH 229 + RAI L Sbjct: 222 MRRAITTLQ 230 >gi|302762260|ref|XP_002964552.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii] gi|300168281|gb|EFJ34885.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii] Length = 220 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 80/200 (40%), Gaps = 15/200 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P + + G + + L GR+ LF G +G GK + A + Sbjct: 2 LSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAAL--- 58 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V + + PC + + L L S + K + + ++++ Sbjct: 59 -----NCVSVEDTRPCGVCRECL-------LLCLGKSGDVKEVDVASHDSTSLMKKLLMD 106 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++G ++V +ID + N LK LEEPP+ +FIL + + + +RC Sbjct: 107 AVVGPSSGRYKVFIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRC 166 Query: 182 LSIKFNSLSENNLYKALEQL 201 F + ++++ L+ L Sbjct: 167 QKFHFPKIKDSDVVSRLQAL 186 >gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi] gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi] Length = 356 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 98 SLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLE 155 +NP G + + +D I+++ + N ++VI+I D + ++A +AL +++E Sbjct: 94 EVNPSDAGMYDRTVVIDLIKQVAQTQQIDINGQREFKVIVISEGDELTKDAQHALRRTME 153 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + IL +++ I+ IRSRCL I+ + SE+++ L+ Sbjct: 154 KYVATCRIILSVNSTSRIIPAIRSRCLGIRVPAPSESDMAAVLQ 197 >gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314] gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314] gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314] gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans] gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1] Length = 363 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 44/231 (19%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L+Q SG + H +LF G G GK + A L P+ K+ V N Sbjct: 46 KVLTQTIKSGNLPH-MLFYGPPGTGKTSTILALAKE-LYGPNLYKSRVLELNASDERGI- 102 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 + + +F L+ S NP T ++++ +++I++D D Sbjct: 103 -SIVREKIKNFARLTIS-NP---------TKEDLQNYP--------CPPYKIIILDEADS 143 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL------------ 189 M +A +AL +++E F+LI + I+ I SRC +F L Sbjct: 144 MTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYI 203 Query: 190 ---------SENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 SENN ++ +++ LKI G D ++ + + ++ I H+ Sbjct: 204 GQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHH 254 >gi|224076092|ref|XP_002192072.1| PREDICTED: replication factor C (activator 1) 2, 40kDa [Taeniopygia guttata] Length = 318 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 77 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 136 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L K +E+ + D + + A G + +A Sbjct: 137 ASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQA 196 Query: 225 IKILH 229 + L Sbjct: 197 LNNLQ 201 >gi|114647199|ref|XP_001156404.1| PREDICTED: replication factor C 5 isoform 3 [Pan troglodytes] gi|114647201|ref|XP_001156460.1| PREDICTED: replication factor C 5 isoform 4 [Pan troglodytes] Length = 319 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 43/236 (18%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+++ + P L H+DI + ++ R+ H LL+ G G GK + A + + Sbjct: 1 MVEK-YRPQTLNDLISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYK 58 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--I 118 + +F + LN + +D +R + Sbjct: 59 DKEFGS----------------------------MVLELNASDDRG-----IDIVRGPIL 85 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + T ++++++D D M ++A NAL + +E+ + F LI + I+ ++ Sbjct: 86 SFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQ 145 Query: 179 SRCLSIKFNSLSEN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 SRC +F L+ L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 146 SRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDGMKALVTLSS-GDMRRALNILQ 200 >gi|114614001|ref|XP_001149802.1| PREDICTED: similar to replication factor C, 40-kDa subunit isoform 3 [Pan troglodytes] Length = 325 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix jacchus] Length = 352 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +++ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKVKMFAQHKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 171 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERVPHTDDGLEAIIFTAQGDMRQA 230 Query: 225 IKILH 229 + L Sbjct: 231 LNNLQ 235 >gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii] gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii] Length = 352 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 5/170 (2%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F SL Sbjct: 132 YKIIILDEADSMTADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLD 191 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 E+N L+++ + + + + G + RAI +L ++ +D I Sbjct: 192 ESNAIGRLKEISQLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQ 251 Query: 247 R-QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 +E A I E+L++ + + +IE++ + + A ++ QL Sbjct: 252 EVEELAGLVPTHILQEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQL 301 >gi|296327721|ref|ZP_06870261.1| ATPase and helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155159|gb|EFG95936.1| ATPase and helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 289 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDIVRDIIKKSYTSSHEGGAKVFILKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 R-LNILSTIKSRSI 143 >gi|225459627|ref|XP_002285875.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 329 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 41/164 (25%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 +LF G G GK T A H L P+ K+ V Sbjct: 33 MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV--------------------------- 64 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY---------WRVIMIDPVDGMNRNAA 147 LN + V+ +I+ F ++ +G+ +++I++D D M +A Sbjct: 65 LELNASDDRGINVVRT----KIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQ 120 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 NAL +++E + F I + I+ + SRC +F LSE Sbjct: 121 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 164 >gi|114613995|ref|XP_001149874.1| PREDICTED: similar to replication factor C, 40-kDa subunit isoform 4 [Pan troglodytes] Length = 354 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|19704897|ref|NP_602392.1| ATPase and helicase subunits involved in DNA replication [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712790|gb|AAL93691.1| ATPases and helicase subunits involved in DNA replication [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 289 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + +D +R I +++ G +V ++ + + + +ANA+LK +EEP + FILIS Sbjct: 71 TLNIDIVRDIIKKSYTSSHEGGAKVFILKNIQDIRKESANAMLKLIEEPTKDNFFILISK 130 Query: 169 ASPTILSTIRSRCL 182 ILSTI+SR + Sbjct: 131 -RLNILSTIKSRSI 143 >gi|34558041|ref|NP_907856.1| DNA polymerase III subunit delta' [Wolinella succinogenes DSM 1740] gi|34483759|emb|CAE10756.1| DNA POLYMERASE III DELTA PRIME SUBUNIT HOLB [Wolinella succinogenes] Length = 210 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF-NSLS 190 RVI+ N A NALLK LEEPP+ + FIL++ + ++L TIRSR I LS Sbjct: 59 RVIIA--AQNYNLYAQNALLKILEEPPKHISFILLATSKSSLLPTIRSRLPIIDHREPLS 116 Query: 191 ENNLYKALEQLKI 203 +N AL L + Sbjct: 117 QNPFPLALSSLSL 129 >gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus] gi|1703053|sp|P53033|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 40 kDa subunit; Short=A1 40 kDa subunit; AltName: Full=Activator 1 subunit 2; AltName: Full=Replication factor C 40 kDa subunit; Short=RF-C 40 kDa subunit; Short=RFC40 gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus] Length = 359 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 118 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 177 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L+++ L K +E+ + D + + A G + +A Sbjct: 178 ASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQA 237 Query: 225 IKILH 229 + L Sbjct: 238 LNNLQ 242 >gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818] Length = 324 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G +++++D VD M A AL +++E F L + S I+ I+SRC Sbjct: 96 VTLPPGRHKIVILDEVDSMTSAAQQALRRTMEMYANTTRFALACNTSEKIIEPIQSRCAV 155 Query: 184 IKFNSLSENNLYKALEQL 201 +++ LS+ L K L ++ Sbjct: 156 LRYTRLSDAQLLKRLLEI 173 >gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens] Length = 354 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1] gi|42559488|sp|Q8PVY4|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1] Length = 338 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 44/200 (22%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA----GHVLQN 61 + PV ++ G E+ + L Y + + H LLF G G+GK A G L Sbjct: 19 YRPVRLNQVAGQEETIERLMSYVATKNLPH-LLFSGPPGVGKTASAVSIAREIFGEDLWR 77 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRY 120 +F++ LN + +D +R +I+ Sbjct: 78 ENFTE--------------------------------LNASDERG-----IDIVRNKIKN 100 Query: 121 FLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F G +++I +D D + +A +AL +++E+ FIL + S I+ I+S Sbjct: 101 FAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQS 160 Query: 180 RCLSIKFNSLSENNLYKALE 199 RC +F LS+ + + LE Sbjct: 161 RCAVYRFRRLSDKAIRERLE 180 >gi|330718535|ref|ZP_08313135.1| DNA polymerase III, delta prime subunit [Leuconostoc fallax KCTC 3537] Length = 299 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T + V +IR + A +V ++D V+ M +AAN+LLK +EEP L ++++ Sbjct: 83 TALKVAQIRALTPEFVTRATESSRKVFVLDAVETMTTSAANSLLKFIEEPAGPQLILMLT 142 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNL 194 + +L TI+SR + S + L Sbjct: 143 NNLNDVLPTIQSRAQIVHLQSEQHSGL 169 >gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] Length = 324 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 37/174 (21%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 E+++ L ++ +G + H LLF G G GK T+ Sbjct: 22 EEVKARLREFVKAGNLPH-LLFYGPPGTGKTTMAL------------------------- 55 Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY--WRVIM 135 + + L+ + +L R + + E R++ F + TA G +++++ Sbjct: 56 ------VLARELYGEYWRENTLELNASDERGIGVIRE--RVKEF-ARTAPVGKAPFKLVI 106 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +D D M +A AL + +E Q FIL+++ I+ I+SR + I+FN L Sbjct: 107 LDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPL 160 >gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens] gi|2507300|sp|P35250|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName: Full=Activator 1 40 kDa subunit; Short=A1 40 kDa subunit; AltName: Full=Activator 1 subunit 2; AltName: Full=Replication factor C 40 kDa subunit; Short=RF-C 40 kDa subunit; Short=RFC40 gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens] gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens] gi|30172692|gb|AAP22334.1| unknown [Homo sapiens] gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo sapiens] gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo sapiens] gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens] gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct] Length = 354 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|331667499|ref|ZP_08368363.1| DNA polymerase III subunit delta' [Escherichia coli TA271] gi|331065084|gb|EGI36979.1| DNA polymerase III subunit delta' [Escherichia coli TA271] Length = 270 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 49/88 (55%) Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 + S L+P + K ++ +D +R + L+ A G +V+ + + AANALLK+ Sbjct: 8 HASRLLHPGSRKRENMLGIDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKT 67 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRC 181 LEEPP + F L + +L+T+RSRC Sbjct: 68 LEEPPAETWFFLATREPERLLATLRSRC 95 >gi|226320646|ref|ZP_03796205.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|226233969|gb|EEH32691.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 303 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum] Length = 512 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 38/189 (20%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G+ED LS G + + L+ G G+GK T A +L P F Sbjct: 200 YRPQTFQEIVGNEDTTNRLSVIAKQGNLPN-LIIAGPPGVGKTTTILCLA-RILLGPAFK 257 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 A + + +A +D +D +R +I+ F Sbjct: 258 DAVLEL---------------NASNDR------------------GIDVVRNKIKMFAQQ 284 Query: 124 -LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G ++I++D VD M A AL +++E F L + S ++ I+SRC Sbjct: 285 KVTLPPGRHKIIILDEVDSMTEGAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCA 344 Query: 183 SIKFNSLSE 191 ++++ L++ Sbjct: 345 ILRYSRLTD 353 >gi|307153433|ref|YP_003888817.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822] gi|306983661|gb|ADN15542.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7822] Length = 843 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 26/36 (72%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 294 AFNALLKTLEEPPNRVVFVLATTDPQRVLPTIISRC 329 >gi|224534556|ref|ZP_03675132.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224514233|gb|EEF84551.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 348 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVHDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPLNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|219685568|ref|ZP_03540384.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219672846|gb|EED29869.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 348 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor] gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor] Length = 339 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 41/183 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + + H +LF G G GK T A + L P+ K+ V Sbjct: 26 QEEVIRVLTNTLQTADLPH-MLFYGPPGTGKTTTALAIA-YQLYGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY-- 130 L L+ S + RT +I+ F ++ T GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKDFAAVAVGTARKAGYPC 112 Query: 131 --WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I++D D M +A NAL +++E + F I + I+ + SRC +F Sbjct: 113 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 172 Query: 189 LSE 191 LSE Sbjct: 173 LSE 175 >gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C 5 isoform 5 [Pan troglodytes] Length = 340 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 42/223 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 ELMVPRLEHVVEEEKVGISEDGMKALVTLSS-GDMRRALNILQ 221 >gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium dendrobatidis JAM81] Length = 358 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M + A NAL + +E+ + V F LI + I+ ++SRC +F L Sbjct: 134 FKLIILDEADAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLE 193 Query: 191 E----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E + + + Q I + R V + G + RA+ IL Sbjct: 194 EAQISDRITHIINQEGINITQAGRQAVLKLSQGDMRRALNILQ 236 >gi|291237115|ref|XP_002738484.1| PREDICTED: replication factor C (activator 1) 2-like [Saccoglossus kowalevskii] Length = 320 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 82 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 141 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC ++++ LS+ + K L E+ + DS + + + G + +A Sbjct: 142 TSDKIIEPIQSRCAVLRYSKLSDAQVLKRLLEISERENVTYNDSGLEAIIFTSQGDMRQA 201 Query: 225 IKILH 229 + L Sbjct: 202 LNNLQ 206 >gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864] Length = 348 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 36/228 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+DI + ++ R+ H LLF G G GK + A + N Sbjct: 35 YRPSSLDELISHKDIISTIDRFITEDRVPH-LLFYGPPGTGKTSTILACAKKMYGN---- 89 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +M S L L+ S + G R ++I+ ++T Sbjct: 90 -----------------RMQSMVLE----LNASDDRGIGVVR-----EQIKEFASTRTIT 123 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ G +++++D D M +A AL + +E+ + F LI + I I+SRC + Sbjct: 124 SSGGT-KLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCTRFR 182 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F LS + L E ++ D + + A G + + + IL Sbjct: 183 FAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKVLNILQ 230 >gi|219684346|ref|ZP_03539290.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219672335|gb|EED29388.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 348 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|55379148|ref|YP_136998.1| replication factor C small subunit 2 [Haloarcula marismortui ATCC 43049] gi|55231873|gb|AAV47292.1| replication factor C small subunit [Haloarcula marismortui ATCC 43049] Length = 335 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 12/186 (6%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LL G +G GK +A V +NPD + M + K+ S+ D + S Sbjct: 36 LLVHGPKGSGKTAAVRAFAREVHENPDADFTELNMAD---VFGMTKKEVSN---DPRFAS 89 Query: 97 YSLNPKTGKWRTVITVDEIRRI-RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 + ++ K + R D I + + S + +G ++ I++D +GM + AL + +E Sbjct: 90 F-IDSK--RRRESSKADLINHVLKESASYSPVSGSYKTILLDNAEGMREDFQQALRRVME 146 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVK 214 + + F++ + ++ IRSRC + + LE + G D D ++ Sbjct: 147 QYYEATQFVIATRQPSAVIPPIRSRCFPVVMREPTHEETASVLEDIVTAEGVDHDDDGIE 206 Query: 215 -IAAYG 219 +A Y Sbjct: 207 YVAGYA 212 >gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3] gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3] Length = 314 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 39/217 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G ++I + L Y M H LLF G GIGK T A L D+ Sbjct: 9 YRPTTLSEIVGQKEIIERLKNYVEKQSMPH-LLFSGSPGIGKTTAALCLAKD-LYGDDWR 66 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +FL L+ S RT V + R + Sbjct: 67 ------------------------ENFLELNSSDERGIDVIRT--KVKDFARTKPI---- 96 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI +D D + +A NAL +++E+ FIL + I+ I+SRC + Sbjct: 97 -GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFR 155 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVA 222 F+ L K + L M + S+ + + I GS A Sbjct: 156 FSPL------KTEDVLDYMNYISENENITIEKSGSDA 186 >gi|302675274|ref|XP_003027321.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8] gi|300101007|gb|EFI92418.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8] Length = 356 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ + K L SG H +LF G G GK T L P K +++ Sbjct: 19 HQGLSKRLQSLASSGDFPH-ILFYGPSGAGKKT-RISCVLKELFGPGAEK--LKIDQRIF 74 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIM 135 SP +++ + + ++ + + + G + V+ + ++ I + N ++V++ Sbjct: 75 LSPSKRKLEINLVQSNFHIEITPS-EAGNYDRVVIQELLKEIAQTQQVDLNAKQRFKVVV 133 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 I+ DG++R+A AL +++E+ + IL ++++ +++ I+SRCL ++ + + + Sbjct: 134 INEADGLSRDAQAALRRTMEKYMSNLRIILCANSTSRLIAPIKSRCLLMRVAAPNAGEMM 193 Query: 196 KALE 199 L+ Sbjct: 194 SVLD 197 >gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 333 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 38/188 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+ED L G M + L+ G G GK T A H L P++ +A + + Sbjct: 29 IVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALA-HELLGPNYKEAVLELNA 86 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL--SLTANTGY 130 D +D +R +I+ F +T G Sbjct: 87 SDDRG---------------------------------IDVVRNKIKMFAQKKVTLPPGR 113 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V+++D D M A AL +++E F L + S I+ I+SRC ++F+ LS Sbjct: 114 HKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLS 173 Query: 191 ENNLYKAL 198 + + L Sbjct: 174 DQEILGRL 181 >gi|312379835|gb|EFR25995.1| hypothetical protein AND_08190 [Anopheles darlingi] Length = 296 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 57 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 116 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE--QLKIMGWDSKR-DFVKIAAYGSVARA 224 S I+ I+SRC ++F+ LS+ L K +E Q +++ +D + + A G + +A Sbjct: 117 TSEKIIEPIQSRCAMLRFSKLSDAQILAKVVEVCQKEVLTYDEDGLEAIVFTAQGDMRQA 176 Query: 225 IKILH 229 + L Sbjct: 177 LNNLQ 181 >gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348] gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348] Length = 326 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ D + NQR DI + L + M H LLF G G GK T Sbjct: 14 RSLDDIVNQR-----DIVERLKHFVKEKNMPH-LLFAGPPGTGKTTSALALV-------- 59 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL 122 H L+ Y Y L R + D IR +++ F Sbjct: 60 -----------------------HDLYGENYEQYLLELNASDERGI---DVIRNKVKEFA 93 Query: 123 -SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++T + ++ +++D D M +A AL +++E + FIL + I+ I+SR Sbjct: 94 RTVTPGSVPFKTVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRT 153 Query: 182 LSIKFNSLSENNLYKALE---QLKIMGWDSKR-DFVKIAAYGSVARAIKILH 229 +F L + ++ LE + + + +D K D + G + +AI +L Sbjct: 154 ALFRFYPLKKEDVISRLEFIMKQEGVQYDPKALDVIYDVTNGDMRKAINVLQ 205 >gi|225459625|ref|XP_002285874.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera] Length = 341 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 41/164 (25%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 +LF G G GK T A H L P+ K+ V L L+ Sbjct: 45 MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV-----------------------LELN 80 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY---------WRVIMIDPVDGMNRNAA 147 S + RT +I+ F ++ +G+ +++I++D D M +A Sbjct: 81 ASDDRGINVVRT--------KIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQ 132 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 NAL +++E + F I + I+ + SRC +F LSE Sbjct: 133 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 176 >gi|254173022|ref|ZP_04879696.1| Replication factor C family protein [Thermococcus sp. AM4] gi|214033178|gb|EEB74006.1| Replication factor C family protein [Thermococcus sp. AM4] Length = 870 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L+ Sbjct: 651 FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLN 710 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + ++ K + EQ + + + A G + RAI +L Sbjct: 711 DEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQ 753 >gi|289613657|emb|CBI59405.1| unnamed protein product [Sordaria macrospora] Length = 389 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 32/231 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ S R+ H LL+ G G GK + A + + Sbjct: 49 YRPVSLADVSGHQDILATINKFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGTANM- 106 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSL 124 +QM L L+ S + R I T ++I S Sbjct: 107 ----------------RQM-------VLELNASDDRGIDVVREQIKTFASTKQIFTLGSS 143 Query: 125 TANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + +G +++I++D D M A AL + +E+ F +I++ S + + SRC Sbjct: 144 ASRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCT 203 Query: 183 SIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L E ++ K +E+ + D + + G + RA+ +L Sbjct: 204 RFRFSPLKEKDIRVLVDKVIEEENVQIMPDATDALVKLSKGDMRRALNVLQ 254 >gi|216263489|ref|ZP_03435484.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215980333|gb|EEC21154.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 348 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +VI I+ ++ ++ N N+LLK LEEPP + FIL + I TI SR Sbjct: 164 KVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARNKNKIPKTILSRL 213 >gi|111115596|ref|YP_710214.1| hypothetical protein BAPKO_0813 [Borrelia afzelii PKo] gi|110890870|gb|ABH02038.1| hypothetical protein BAPKO_0813 [Borrelia afzelii PKo] Length = 348 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +VI I+ ++ ++ N N+LLK LEEPP + FIL + I TI SR Sbjct: 164 KVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARNKNKIPKTILSRL 213 >gi|193659798|ref|XP_001951302.1| PREDICTED: replication factor C subunit 3-like [Acyrthosiphon pisum] Length = 355 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 41/197 (20%), Positives = 91/197 (46%), Gaps = 6/197 (3%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q++ H+D + L+ G H LLF G G GK T L P Sbjct: 8 YRPNSLQKVDYHQDQAQHLTNLVNQGDFPH-LLFYGPNGAGKKTRILALLRQ-LYGPGVE 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL- 124 + +R + + +P K+ + ++ + + G + ++ ++ I+ + L Sbjct: 66 R--LRTEHMNFMTPSNKKFEIMTVASNYHIEVNAS-DAGMYDRIVVMELIKTVAQTHQLD 122 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +++VI++ VD + + A AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 STKQRHFKVILLTEVDRLTKEAQQALRRTMEKYMATCRIILCANSIGQVIPAIRSRCLAV 182 Query: 185 KFNSLSENNLYKALEQL 201 + + + ++ K L+ + Sbjct: 183 RVPAPTHEDICKILKTI 199 >gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba] gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba] Length = 331 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 5/99 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 93 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 S I+ I+SRC ++F LS+ + L +++ W+ Sbjct: 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKL--IEVAKWE 189 >gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta] gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta] Length = 331 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 5/99 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 93 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD 207 S I+ I+SRC ++F LS+ + L +++ W+ Sbjct: 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKL--IEVAKWE 189 >gi|66523693|ref|XP_624376.1| PREDICTED: replication factor C subunit 3 [Apis mellifera] Length = 355 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 8/198 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H++ +L G H L++ G G GK T R + + Sbjct: 8 YRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVY-GPSGAGKKT---RIMCIIKELYGSG 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSL 124 +RM +P K++ + ++ +NP G + V+ +D ++ + Sbjct: 64 TERLRMETMTFETPSKKKLEISTISSNYHIE--VNPSDVGIYDRVVVMDLVKTTAQTHQI 121 Query: 125 TAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 N ++V+++ VD + ++A +AL +++E+ IL ++++ +L IRSRCL Sbjct: 122 DPNGQKEFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRCLG 181 Query: 184 IKFNSLSENNLYKALEQL 201 I+ + S N+ L + Sbjct: 182 IRVPAPSIKNIKDILHTI 199 >gi|148377946|ref|YP_001256822.1| DNA polymerase III subunit delta' [Mycoplasma agalactiae PG2] gi|148291992|emb|CAL59384.1| DNA polymerase III subunit [Mycoplasma agalactiae PG2] Length = 300 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I++ +D + + NALLK++EEP +F+L + ++L TI+SR + I Sbjct: 90 YKIIILKEIDKASNASLNALLKNIEEPSSDTIFLLTTRNINSVLPTIQSRSIVI 143 >gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis] gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis] Length = 335 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 47/307 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ ++ H LLF G G GK + A + ++ +F+ Sbjct: 29 LISHQDILSTIQRFISEDKLPH-LLFYGPPGTGKTSTILACAKQLYKDREFNS------- 80 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D +R + + + T + Sbjct: 81 -------------------MVLELNASDDRG-------IDIVRGPILSFASTRTIFKKGF 114 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS Sbjct: 115 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSS 174 Query: 192 NNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILHYDCDKIISSYIDLIHIPR 247 + + LE +K D D +K + G + R++ IL D ++ Sbjct: 175 DMMIPRLEHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCT 234 Query: 248 QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD-QIAQIYF 306 + I D +L++D A+ ++E K+ K AL L E + ++ F Sbjct: 235 GHPLRSDIANILDWMLNKDFTSAYKNIMEL------KTLKGLALHDILTEVHLYVHRVNF 288 Query: 307 SLVKRVH 313 R+H Sbjct: 289 PASVRMH 295 >gi|309805432|ref|ZP_07699479.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308165250|gb|EFO67486.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 188 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G R ++ + +A NALL LEEP V+ ILI++ TIL T+RSR I F Sbjct: 8 GSRRFFIVKDASSLTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHF 65 >gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407] Length = 395 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 28/201 (13%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 +LF G G GK + A L P+F K+ V N + + DF + Sbjct: 69 MLFYGPPGTGKTSTILALAKE-LYGPEFVKSRVLELNASDERGI--SIVREKVKDFARMQ 125 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + NP G R RY +++I++D D M ++A +AL +++E Sbjct: 126 LT-NPPPGY-----------RDRYPCP------PFKLIVLDEADSMTQDAQSALRRTMET 167 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIA 216 + F LI + I+ + SRC +F SL + N +E + + R+ V +A Sbjct: 168 YSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDI------ATREHVSLA 221 Query: 217 AYGSVARAIKILHYDCDKIIS 237 G+V I+ D K I+ Sbjct: 222 P-GAVDALIRCSEGDLRKAIT 241 >gi|301754743|ref|XP_002913283.1| PREDICTED: spatacsin-like [Ailuropoda melanoleuca] Length = 2445 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 W+ + TVDE + + + W + ++ V ANA+L + + P + F + Sbjct: 658 WKIIDTVDEYD-VNENVPKVRESNIWEKLSVEEV------IANAILNN-KIPEAQTFFRI 709 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 +H++ + IR L++ F+SL +NN+ +A E LK MG+D K +KI Y + Sbjct: 710 NNHSAQRLEELIRIG-LNLVFDSLKKNNIKEASELLKNMGFDVKDQLLKICFYTT 763 >gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299] gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299] Length = 355 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 36/218 (16%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 H+DI + + R+ + LL+ G G GK + A L P FS+ Sbjct: 47 AHKDIIDTIGRLTSQDRLPYLLLY-GPPGTGKTSTILAVAKE-LYGPQFSQ--------- 95 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 ++ LN + V+ +EI + +N G+ ++I+ Sbjct: 96 -------------------MTLELNASDDRGIDVVR-NEISAFASTMRFGSNAGF-KLII 134 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M ++A AL + +E+ + F LI + ++ ++SRC +F+ L N + Sbjct: 135 LDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVK 194 Query: 196 KALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ Q + D D V G + R + IL Sbjct: 195 DRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQ 232 >gi|289804114|ref|ZP_06534743.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 270 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 V ++R++ NALLK+LEEPP V F+L + + TI SRCL +L + L Sbjct: 1 VHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 60 Query: 199 EQL 201 E + Sbjct: 61 EHI 63 >gi|114613993|ref|XP_001149740.1| PREDICTED: similar to replication factor C, 40-kDa subunit isoform 2 [Pan troglodytes] Length = 378 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480] gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480] Length = 397 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 35/222 (15%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVESNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A ++ S P +G + G +++ Sbjct: 120 DRGIDVVREQIKTFASTKQIF---STAPSSG---------------------SGLGAFKL 155 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 156 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQD 215 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + K + EQ++I D+ VK+ + G + RA+ +L Sbjct: 216 IRKLVDTVIDKEQVQIQP-DAIDSLVKL-SKGDMRRALNVLQ 255 >gi|257066617|ref|YP_003152873.1| DNA polymerase III gamma/tau subunits-like protein [Anaerococcus prevotii DSM 20548] gi|256798497|gb|ACV29152.1| DNA polymerase III gamma/tau subunits-like protein [Anaerococcus prevotii DSM 20548] Length = 261 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 Y ++ K G VI ++ IR++ + L G ++ +I + + +NA+LKSLEE Sbjct: 53 YLIDKKGG----VIDIETIRQVLKDIYLRPYNGKIKIYIIHNAQDLRQEGSNAMLKSLEE 108 Query: 157 PPQKVLFILISHASPTILSTIRSRC 181 V I +L+TIRSRC Sbjct: 109 LRDYVKIIFTCTNRYNLLATIRSRC 133 >gi|111225914|ref|YP_716708.1| DNA polymerase III subunit delta' [Frankia alni ACN14a] gi|111153446|emb|CAJ65204.1| DNA polymerase III delta' subunit [Frankia alni ACN14a] Length = 417 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 M H+ LF G G G+ +A + + + P C + A+ L Sbjct: 45 MTHSWLFTGPSGAGRQEAARAFAAGL----NCEREPPGCGECTGCHTVLTDTATD-LRTV 99 Query: 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK 152 SL V ++R + + G WR++++ D + AANALLK Sbjct: 100 TPEGLSLG-----------VKDVRALVRDAASAPTAGRWRILLLTDADRLTEAAANALLK 148 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +LEEP ++ +F+L + + +L TIRSRC ++ Sbjct: 149 ALEEPAERAVFLLCAPSIEDVLPTIRSRCRTVALR 183 >gi|261886173|ref|ZP_06010212.1| DNA polymerase III subunit delta' [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 170 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 27/35 (77%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NALLK LEEPP+ +FIL++ + ++L TIRSR + Sbjct: 35 NALLKILEEPPKNSIFILVAPSKNSLLPTIRSRLM 69 >gi|240047503|ref|YP_002960891.1| DNA polymerase III subunit delta' [Mycoplasma conjunctivae HRC/581] gi|239985075|emb|CAT05068.1| HYPOTHETICAL PROTEIN MCJ_003800 [Mycoplasma conjunctivae] Length = 295 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 ++EI ++ YF ++ A+ R ++I VD + + N+LLK +EEPPQ FI + Sbjct: 64 LEEINQL-YFSNVGASN--LRFVIIKSVDQGHPSLLNSLLKIIEEPPQDTYFIFSAQKKE 120 Query: 172 TILSTIRSRC 181 +LSTI SR Sbjct: 121 KVLSTICSRS 130 >gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens] Length = 340 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 48/291 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ R+ H LL+ G G GK + A + ++ +F Sbjct: 34 LISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLYKDKEFGS------- 85 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + L + + G +D IR + + + T + Sbjct: 86 -------------------MVLELNASDDRG-------IDIIRGPILSFASTRTIFKKGF 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 KLVILDEADAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 179 Query: 192 N----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 L +E+ K+ + D + V +++ G + RA+ IL + ++ Sbjct: 180 ELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQSTNMAFGKVTEETVYTC 238 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L+QD A+ + E K+ K AL L E Sbjct: 239 TGHPLKSDIANILDWMLNQDFTTAYRNITEL------KTLKGLALHDILTE 283 >gi|309800192|ref|ZP_07694376.1| DNA polymerase III delta prime subunit [Streptococcus infantis SK1302] gi|308116180|gb|EFO53672.1| DNA polymerase III delta prime subunit [Streptococcus infantis SK1302] Length = 115 Score = 42.7 bits (99), Expect = 0.072, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 112 VDEIRRIRYFLSLTANTGY---WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 V + RIR + A +G +V +I+ + M+ NAAN+LLK +EEP ++ ++ Sbjct: 19 VIKTERIRELVGQFAQSGIENQRQVFIIEQAEKMHVNAANSLLKVIEEPQSEIYIFFLTD 78 Query: 169 ASPTILSTIRSRCLSIKF 186 +L TIRSR +F Sbjct: 79 DEEQMLPTIRSRTQIFQF 96 >gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 344 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 112 VDEIR-RIRYF----LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D +R RI+ F +SL A +++++D D M A A+ +++E F L Sbjct: 93 IDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQAMRRTMEIHSATTRFALA 152 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 + S I+ I+SRC ++F+ L ++++ ++++ M Sbjct: 153 CNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADM 190 >gi|313678821|ref|YP_004056561.1| DNA polymerase III subunit-like protein [Mycoplasma bovis PG45] gi|312950782|gb|ADR25377.1| DNA polymerase III subunit-like protein [Mycoplasma bovis PG45] Length = 300 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I++ +D + + NALLKS+EEP +F+L + +L TI SR + I Sbjct: 90 YKIIILKEIDKASNASLNALLKSIEEPSDDTIFLLTTKNLSAVLQTILSRSVVI 143 >gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum] Length = 387 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 47/228 (20%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GHEDI ++++ + R+ H LLF G G GK + A H+ Sbjct: 59 GHEDILTTINKFVQTNRLPH-LLFYGPPGTGKTSTILALARHI----------------- 100 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS----LTANT--- 128 + H+ LN + V+ +I+ F S A+T Sbjct: 101 -----------YGAHNIRQQVLELNASDDRGIEVVR----EQIKTFASTKQIFGASTKTD 145 Query: 129 ---GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G +++I++D D M A NAL + +E+ F +I++ + + + + SRC + Sbjct: 146 GELGSFKLIILDEADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFR 205 Query: 186 FNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 F+ L + L + ++ + K+ S D + + G + R++ +L Sbjct: 206 FSPLPIDALRRRVDHVIDAEKVKITPSAVDALLQLSRGDMRRSLNVLQ 253 >gi|270261352|ref|ZP_06189625.1| hypothetical protein SOD_a05820 [Serratia odorifera 4Rx13] gi|270044836|gb|EFA17927.1| hypothetical protein SOD_a05820 [Serratia odorifera 4Rx13] Length = 142 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 L P+ GK + + ++ IR++ L A G +VI + + + AANALLK+LEEPP Sbjct: 79 LTPEKGK--SSLGIEPIRQVIETLYSHAQQGGAKVIWLPQAELLTEAAANALLKTLEEPP 136 Query: 159 QKVL 162 +K + Sbjct: 137 EKPI 140 >gi|269114873|ref|YP_003302636.1| DNA polymerase III subunit [Mycoplasma hominis] gi|268322498|emb|CAX37233.1| DNA polymerase III subunit [Mycoplasma hominis ATCC 23114] Length = 277 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 SL AN ++ ++I V+ + AAN++LK LE PP + +L + +L TI+SRC Sbjct: 87 SLFANK--YKFLIIKCVENITLKAANSILKFLENPPFNTIILLHTIKPQNVLKTIKSRCF 144 Query: 183 SI 184 I Sbjct: 145 II 146 >gi|242073490|ref|XP_002446681.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor] gi|241937864|gb|EES11009.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor] Length = 855 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 21/205 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + F P L G + + L C G++ LF G +G GK + +A + Sbjct: 163 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAAL--- 219 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 V + PC F K+ + +S + K +D + R++ Sbjct: 220 -----NCVSLEEQRPCG-FCKECV---------ILFSGKSRDVKELDAAKMDRLGRVKAL 264 Query: 122 L---SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L SL + ++V +ID + +A +A+LKSL+EP + ++I+I+ ++ T Sbjct: 265 LKSASLVPYSSRFKVFIIDECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRTSI 324 Query: 179 SRCLSIKFNSLSENNLYKALEQLKI 203 + C F + ++ LE++ I Sbjct: 325 THCQKFHFPKIKVADIVYRLERICI 349 >gi|269859525|ref|XP_002649487.1| replication factor C subunit [Enterocytozoon bieneusi H348] gi|220067038|gb|EED44506.1| replication factor C subunit [Enterocytozoon bieneusi H348] Length = 303 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 20/143 (13%) Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV----------ITVDE--- 114 P + N + ++ + S +L DF + + P TGK T+ I + E Sbjct: 12 PTDLNNICGNTNIIQCLKSFSLLDFPNMLFYGPPGTGKTTTIKALIHNKINPINILELNA 71 Query: 115 -----IRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 I +R + A T R++++D D M+R+A NAL + +E+ + F LI + Sbjct: 72 SDDRGINIVRNQIKQFAETSTQLRLVILDEADSMSRDAQNALRRIMEDY-ENCRFCLICN 130 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 I+ I+SRC KF+++++ Sbjct: 131 YVKNIIDPIQSRCAKFKFSNMTD 153 >gi|171689292|ref|XP_001909586.1| hypothetical protein [Podospora anserina S mat+] gi|170944608|emb|CAP70719.1| unnamed protein product [Podospora anserina S mat+] Length = 352 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D + R+A AL +++E+ + IL+ ++ I++ IRSRCL ++ + Sbjct: 129 FKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILVGESTAGIIAPIRSRCLLVRVARPT 188 Query: 191 ENNLYKALE-QLKIMGWDSKRDFVKIAAYGSVAR 223 + L + GW+ + V G VAR Sbjct: 189 VGEVEGVLRGSCEREGWEVREGLV-----GRVAR 217 >gi|331703061|ref|YP_004399748.1| DNA polymerase III subunit delta [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801616|emb|CBW53769.1| DNA polymerase III delta subunit [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 246 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 110 ITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 IT E+ + +SL+A T + +I + ++AAN+LLK LEEPP IL+++ Sbjct: 78 ITNQEVLDLINKMSLSATATQNIKFFIIKNAQNLKQSAANSLLKFLEEPPINTYGILLTN 137 Query: 169 ASPTILSTIRSRC 181 I++TI SRC Sbjct: 138 NYSEIINTIWSRC 150 >gi|311269763|ref|XP_003132629.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa] Length = 364 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 + ++Q +++ + ++ VKI+ G +A +K+ D K I+ + + Sbjct: 204 DK-----IQQQRLLDI-ADKEHVKISDEG-IAYLVKVSEGDLRKAITFLQSATRLTGGKE 256 Query: 251 ALQKM---------QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 +KM + D +L+ Q +FD L E ++K++ AA Sbjct: 257 VTEKMITDIAGVVPTETIDGVLAACQSGSFDKL-EAVVKDLIDEGHAAT 304 >gi|118474531|ref|YP_892272.1| DNA polymerase III subunit delta' [Campylobacter fetus subsp. fetus 82-40] gi|118413757|gb|ABK82177.1| DNA polymerase III subunit delta [Campylobacter fetus subsp. fetus 82-40] Length = 205 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 27/35 (77%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 NALLK LEEPP+ +FIL++ + ++L TIRSR + Sbjct: 70 NALLKILEEPPKNSIFILVAPSKNSLLPTIRSRLM 104 >gi|296273261|ref|YP_003655892.1| putative DNA polymerase III delta prime subunit HolB [Arcobacter nitrofigilis DSM 7299] gi|296097435|gb|ADG93385.1| putative DNA polymerase III delta prime subunit HolB [Arcobacter nitrofigilis DSM 7299] Length = 207 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 26/35 (74%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 A N+LLK LEEPP+ ++F++I+ A IL TI SR Sbjct: 75 AQNSLLKVLEEPPRNIVFVIITTAKSNILPTILSR 109 >gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens] gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens] Length = 315 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 75 IDVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 134 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC ++F L+++ L + Q ++ + + V A G + +A Sbjct: 135 TSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQESVIATNDGLEAVIFTAQGDMRQA 194 Query: 225 IKILH 229 + L Sbjct: 195 LNNLQ 199 >gi|256383649|gb|ACU78219.1| DNA polymerase III delta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256384480|gb|ACU79049.1| DNA polymerase III delta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455852|gb|ADH22087.1| DNA polymerase III delta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 246 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 110 ITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 IT E+ + +SL+A T + +I + ++AAN+LLK LEEPP IL+++ Sbjct: 78 ITNQEVLDLINKMSLSATATQNIKFFIIKNAQNLKQSAANSLLKFLEEPPINTYGILLTN 137 Query: 169 ASPTILSTIRSRC 181 I++TI SRC Sbjct: 138 NYSEIINTIWSRC 150 >gi|13508357|ref|NP_110307.1| gamma-like [Mycoplasma pneumoniae M129] gi|2494198|sp|P75177|DPO3X_MYCPN RecName: Full=DNA polymerase III subunit gamma/tau gi|1673890|gb|AAB95872.1| DnaX [Mycoplasma pneumoniae M129] Length = 681 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 113/276 (40%), Gaps = 38/276 (13%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMC 72 G + I++ + ++ H +F GE+G GK T A + N D +C Sbjct: 19 GQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCLNWNGD-------VC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N C ++ A+ F + S N +++IR + + + Sbjct: 72 NQ--CEACQAINSNSAIDVFEIDAASKN----------GINDIRELAENVFNLPFKFKKK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D + + + LLK+LEE P VLFI + I TI SRC S F ++ N Sbjct: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQIT-N 178 Query: 193 NLYK-------ALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLI 243 +L + A E +KI + VK+A A GS+ + +L + S I L Sbjct: 179 DLIQQRLAEVAAKESIKI----TTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLA 234 Query: 244 HIPRQEYALQKMQQIA--DELLSQDQKIAFDFLIEF 277 + + L K Q+ + +LS D K +F + F Sbjct: 235 DVEKTFNLLDKEQKFGFIEAVLSGDLKQSFHLIDNF 270 >gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1] gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1] Length = 393 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 32/221 (14%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + N + + + + D Sbjct: 59 GHKDIIATINKFVDSNRLPHLLLY-GPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + + ++ S PKTG ++ +++ Sbjct: 118 DRGIDVVREQIKTFSSTKQIFASA---PKTGD--------------------SSLATFKL 154 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L + + Sbjct: 155 IILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQD 214 Query: 194 LY----KALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 + K +E K+ + D+ V + + G + RA+ +L Sbjct: 215 IRNLVDKVIEDEKVNITQDATGSLVTL-SKGDMRRALNVLQ 254 >gi|172056069|ref|YP_001812529.1| DNA-directed DNA polymerase [Exiguobacterium sibiricum 255-15] gi|171988590|gb|ACB59512.1| DNA-directed DNA polymerase [Exiguobacterium sibiricum 255-15] Length = 330 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 75 DPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 +PC ++M S L D+ Y + P I ++I+ + + LSL G + Sbjct: 61 EPCQTCRSCRRMDSGNLVDY----YQIEPDGA----TIKKEQIQELMHDLSLRGLEGDRQ 112 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 + ++ M AAN+LLK EEP + ILI++ +L TIRSR + F Sbjct: 113 IYVVTQSHKMTPQAANSLLKFFEEPGAGKVAILITNQPQLLLPTIRSRGQLLSF 166 >gi|312149336|gb|ADQ29407.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 348 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LEEPP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEEPPLNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|301633509|gb|ADK87063.1| DNA polymerase III, subunit gamma and tau [Mycoplasma pneumoniae FH] Length = 681 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 113/276 (40%), Gaps = 38/276 (13%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVRMC 72 G + I++ + ++ H +F GE+G GK T A + N D +C Sbjct: 19 GQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCLNWNGD-------VC 71 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 N C ++ A+ F + S N +++IR + + + Sbjct: 72 NQ--CEACQAINSNSAIDVFEIDAASKN----------GINDIRELAENVFNLPFKFKKK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 V ++D + + + LLK+LEE P VLFI + I TI SRC S F ++ N Sbjct: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQIT-N 178 Query: 193 NLYK-------ALEQLKIMGWDSKRDFVKIA--AYGSVARAIKILHYDCDKIISSYIDLI 243 +L + A E +KI + VK+A A GS+ + +L + S I L Sbjct: 179 DLIQQRLAEVAAKESIKI----TTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLA 234 Query: 244 HIPRQEYALQKMQQIA--DELLSQDQKIAFDFLIEF 277 + + L K Q+ + +LS D K +F + F Sbjct: 235 DVEKTFNLLDKEQKFGFIEAVLSGDLKQSFHLIDNF 270 >gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 316 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 40/63 (63%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I +D D + +A +AL +++E+ + FIL ++ + I+ I+SRC+ +F L+E Sbjct: 100 KIIFLDEADALTADAQHALRRTMEKFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTE 159 Query: 192 NNL 194 +++ Sbjct: 160 DDM 162 >gi|224076090|ref|XP_002192040.1| PREDICTED: similar to replication factor C (activator 1) 2 [Taeniopygia guttata] Length = 271 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 127 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 186 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L K +E+ + D + + A G + +A Sbjct: 187 ASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQA 246 Query: 225 IKILH 229 + L Sbjct: 247 LNNLQ 251 >gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z] gi|158512813|sp|A2SQT3|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z] Length = 321 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 81/191 (42%), Gaps = 39/191 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G +D+ + L Y + + H LLF G G+GK T A + + Sbjct: 20 VVGQQDVVERLRSYVATKALPH-LLFTGSAGVGKTTCAVALAREMFGD------------ 66 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTG--Y 130 ++++N + +D +R +I+ F + TA G Sbjct: 67 ----------------------TWNMNFRELNASDERGIDVVRNQIKQF-ARTAPLGDAT 103 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++ +D D + ++A AL +++E + FIL + S I+ I+SRC +F L+ Sbjct: 104 FKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLT 163 Query: 191 ENNLYKALEQL 201 + + + + ++ Sbjct: 164 DEAISEEIARI 174 >gi|109066327|ref|XP_001082511.1| PREDICTED: replication factor C subunit 2 isoform 2 [Macaca mulatta] Length = 352 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 111 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ ++ D + + A G + +A Sbjct: 171 ASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 230 Query: 225 IKILH 229 + L Sbjct: 231 LNNLQ 235 >gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371] gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517] gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371] gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517] Length = 362 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 28/199 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P++ + G+ + + L G M H ++ G GIGK T A +L + + Sbjct: 34 YRPIFLDDVVGNTETIERLKIIARDGNMPHVII-SGMPGIGKTTSILCLARQLLGDT-YK 91 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +A + + +A + L+Y+LN + +D +R RI+ F Sbjct: 92 EAVLEL---------------NASDERGLLNYALN--------LFRIDVVRNRIKGFAQK 128 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F + S I+ ++SRC Sbjct: 129 KVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCA 188 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L++ + K L Q+ Sbjct: 189 ILRYSRLTDAQVVKRLMQI 207 >gi|241839414|ref|XP_002415236.1| replication factor C, subunit RFC2, putative [Ixodes scapularis] gi|215509448|gb|EEC18901.1| replication factor C, subunit RFC2, putative [Ixodes scapularis] Length = 252 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A NAL + +E+ + F LI + I+ ++SRC +F LS Sbjct: 34 FKLIILDEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLS 93 Query: 191 ENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + +EQ ++ + + + A G + +A+ IL Sbjct: 94 LSQMSPRIEHVIEQERLTVTEDGKKALMDLAQGDMRKALNILQ 136 >gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus lucimarinus CCE9901] gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus lucimarinus CCE9901] Length = 332 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 33/196 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + H+ I ++++ G++ H LLF G G GK + A L +FS Sbjct: 19 YRPVGLSEVVAHKAIVDVINKFADGGQLPH-LLFHGPPGTGKTSTILALAKE-LYGLNFS 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + LN + V+ DEI+ + Sbjct: 77 N----------------------------MVLELNASDARGINVVR-DEIQSFASTMRPF 107 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + T ++++++D D M ++A AL + +E+ Q F LI + + ++ ++SRC + Sbjct: 108 STT--FKLVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFR 165 Query: 186 FNSLSENNLYKALEQL 201 F+ ++ ++ + L + Sbjct: 166 FSPIASGDMLQRLRHI 181 >gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor] gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor] Length = 339 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 41/183 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + + H +LF G G GK T A + L P+ K+ V Sbjct: 26 QEEVIRVLTNTLQTADLPH-MLFYGPPGTGKTTTALAIA-YQLYGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY-- 130 L L+ S + RT +I+ F ++ T GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKDFAAVAVGTARKAGYPC 112 Query: 131 --WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I++D D M +A NAL +++E + F I + I+ + SRC +F Sbjct: 113 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKP 172 Query: 189 LSE 191 LSE Sbjct: 173 LSE 175 >gi|24753760|gb|AAN64008.1|AF434658_5 DNA polymerase III, gamma subunit [Leptospira interrogans] Length = 310 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 20/191 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALL-FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G E FL +Y LL F G G GK + R+ +VL F + Sbjct: 8 EILGQEVALTFLKRYISKPETIPPLLIFHGPDGTGKESASERFIKNVLC---FEGTSCGV 64 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR------IRYFLSLT 125 C C F+ SH D++ ++GK + + D IR L+ Sbjct: 65 CAS--CKSFIHN--SHP--DYIRFP----EESGKIIPIGSEDNPEEFSIRWLIRSRLNYR 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +R I+ + A ALLKSLEE P FI I + + TI SR + + Sbjct: 115 PHLSKFRFIVFPDASLIGNEAETALLKSLEEAPPFSRFIFIVNNLDKLKETIVSRAICVP 174 Query: 186 FNSLSENNLYK 196 F L++ +L K Sbjct: 175 FQYLNQEDLRK 185 >gi|24217060|ref|NP_714541.1| DNA polymerase III gamma and tau subunits [Leptospira interrogans serovar Lai str. 56601] gi|45659308|ref|YP_003394.1| DNA polymerase III subunit-like protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24198473|gb|AAN51559.1| DNA polymerase III gamma and tau subunits [Leptospira interrogans serovar Lai str. 56601] gi|45602554|gb|AAS72031.1| DNA polymerase III subunit-related protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 310 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 20/191 (10%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALL-FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 + G E FL +Y LL F G G GK + R+ +VL F + Sbjct: 8 EILGQEVALTFLKRYISKPETIPPLLIFHGPDGTGKESASERFIKNVLC---FEGTSCGV 64 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR------IRYFLSLT 125 C C F+ SH D++ ++GK + + D IR L+ Sbjct: 65 CAS--CKSFIHN--SHP--DYIRFP----EESGKIIPIGSEDNPEEFSIRWLIRSRLNYR 114 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +R I+ + A ALLKSLEE P FI I + + TI SR + + Sbjct: 115 PHLSKFRFIVFPDASLIGNEAETALLKSLEEAPPFSRFIFIVNNLDKLKETIVSRAICVP 174 Query: 186 FNSLSENNLYK 196 F L++ +L K Sbjct: 175 FQYLNQEDLRK 185 >gi|156537616|ref|XP_001607747.1| PREDICTED: similar to ENSANGP00000009446 [Nasonia vitripennis] Length = 351 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 38/181 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+ED + LS + G + L+ G G+GK T +A +L P F A Sbjct: 48 IVGNEDTVERLSIFAQHGNAPN-LIIAGPPGVGKTTTILCFA-RILLGPSFKDA------ 99 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTAN--TGY 130 L + + + G +D +R +I+ F N G Sbjct: 100 --------------------VLELNASNERG-------IDVVRNKIKMFAQKKVNLAPGK 132 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I++D D M A AL +++E F L + S I+ I+SRC I++ LS Sbjct: 133 HKIIILDEADSMTDGAQQALRRTMEIYSSTTRFALACNNSEKIIEPIQSRCAMIRYGKLS 192 Query: 191 E 191 + Sbjct: 193 D 193 >gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis] gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis] Length = 356 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Query: 98 SLNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLE 155 +NP G + + +D I+++ + N ++VI+I D + ++A +AL +++E Sbjct: 94 EVNPSDAGMYDRTVVIDLIKQVAQTHQIDVNGQREFKVIVISEGDELTKDAQHALRRTME 153 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + IL +++ I+ IRSRCL I+ + SE + L+ Sbjct: 154 KYVATCRIILSVNSTSRIIPAIRSRCLGIRVPAPSEAEMIAVLQ 197 >gi|194306569|ref|NP_001123584.1| replication factor C subunit 5 isoform 3 [Homo sapiens] Length = 255 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 34 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93 Query: 191 EN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 94 PELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 136 >gi|114647197|ref|XP_001156346.1| PREDICTED: replication factor C 5 isoform 2 [Pan troglodytes] Length = 341 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 120 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 179 Query: 191 EN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 180 PELMVPRLEHVVEEEKVGISEDGMKALVTLSS-GDMRRALNILQ 222 >gi|289810799|ref|ZP_06541428.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 140 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 15/150 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C D C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVC--DNC----REIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 + G ++V +ID V ++R++ NAL Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 >gi|78183895|ref|YP_376329.1| DNA polymerase III subunit delta' [Synechococcus sp. CC9902] gi|78168189|gb|ABB25286.1| DNA polymerase III, delta prime subunit [Synechococcus sp. CC9902] Length = 318 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 86/214 (40%), Gaps = 40/214 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 FD + Q L H L R+ A LF G G+G+ R+ VL Sbjct: 5 FDGLVGQPLAVH-----LLEAALQQNRLAPAYLFAGPDGVGRRFAALRFLEGVLSGGVG- 58 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI------RRIR 119 C +++ D +++ + G+ ++T DE RR Sbjct: 59 -----------CDRARRRLEERNHPDLIWVEPTFQ-HQGR---LLTRDEAVDAGMSRRTP 103 Query: 120 YFLSLTANTGYWRVIMIDPVD---GM---------NRNAANALLKSLEEPPQKVLFILIS 167 L L G R + PV+ GM AANALLK+LEEP L IL++ Sbjct: 104 PQLRLEQIRGVSRALARQPVESTRGMVVIESAEAMAEAAANALLKTLEEPGHG-LLILLT 162 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 A +LSTIRSRC I+F L ++ + L +L Sbjct: 163 AAPERLLSTIRSRCQLIRFVRLDVPSVSQVLHRL 196 >gi|291320670|ref|YP_003515935.1| DNA polymerase III subunit [Mycoplasma agalactiae] gi|290753006|emb|CBH40982.1| DNA polymerase III subunit [Mycoplasma agalactiae] Length = 300 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 34/54 (62%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++I++ +D + + NALLK++EEP +F+L + +L TI+SR + I Sbjct: 90 YKIIILKEIDKASNASLNALLKNIEEPSSDTIFLLTTRNINAVLPTIQSRSIVI 143 >gi|67969441|dbj|BAE01071.1| unnamed protein product [Macaca fascicularis] Length = 255 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 34 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93 Query: 191 EN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 94 PELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 136 >gi|301092501|ref|XP_002997106.1| replication factor C subunit 3 [Phytophthora infestans T30-4] gi|262111642|gb|EEY69694.1| replication factor C subunit 3 [Phytophthora infestans T30-4] Length = 352 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 25/205 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT-----LGFRYAGHVL- 59 + P L H ++ K LS S + H L++ G G GK T L Y L Sbjct: 7 YRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVY-GPSGAGKKTRIMALLRALYGDGALK 65 Query: 60 ---QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 ++ F KAP R + + +AS+ +NP + V E+ Sbjct: 66 VRLEHKSF-KAPNRSTKVE-----ITTVASN-------FHIEMNPSDVGNNDRLVVQEVL 112 Query: 117 R--IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 + +Y L+ T ++V+++ VD +++NA +AL +++E+ IL + ++ Sbjct: 113 KEIAQYHLADTNAHRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVI 172 Query: 175 STIRSRCLSIKFNSLSENNLYKALE 199 +RSRCL ++ + + +++ L+ Sbjct: 173 DPLRSRCLGVRVGAPTTDDICTILQ 197 >gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata] gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata] Length = 334 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 38/188 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+ED L G M + L+ G G GK T A H L P++ +A + + Sbjct: 30 IVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALA-HELLGPNYKEAVLELNA 87 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL--SLTANTGY 130 D +D +R +I+ F +T G Sbjct: 88 SDDRG---------------------------------IDVVRNKIKMFAQKKVTLPPGR 114 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V+++D D M A AL +++E F L + S I+ I+SRC ++F+ LS Sbjct: 115 HKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLS 174 Query: 191 ENNLYKAL 198 + + L Sbjct: 175 DQQILGRL 182 >gi|255066245|ref|ZP_05318100.1| DNA polymerase III, subunit gamma and tau [Neisseria sicca ATCC 29256] gi|255049455|gb|EET44919.1| DNA polymerase III, subunit gamma and tau [Neisseria sicca ATCC 29256] Length = 598 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE----NNLYKA 197 ++++A NA+LK+LEEPP+ V FIL + + T+ SRCL +++ ++L Sbjct: 2 LSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTSQQVADHLAHV 61 Query: 198 LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L I + + AA GS+ A+ +L Sbjct: 62 LNNENIAYESAALQLLGRAAAGSMRDALSLL 92 >gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 305 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K + A+ + L S L R + TV E I+ F S + T +++++D D Sbjct: 49 KTTSIRAIANNLPRSCVLELNASDERGIATVRET--IKEFASTYSKT--TKLVILDEADM 104 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 M+R+A NAL + +E+ F LI++ S I+ I SRC +F + + Sbjct: 105 MSRDAQNALRRIIEDFSANARFCLIANHSRKIIPPILSRCTKFRFGPIED 154 >gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni] gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni] Length = 333 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 95 IDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 154 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F LS++ + L Sbjct: 155 TSEKIIEPIQSRCAMLRFTKLSDSQVMAKL 184 >gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera] Length = 341 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 41/164 (25%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 +LF G G GK T A H L P+ K+ V L L+ Sbjct: 45 MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV-----------------------LELN 80 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY---------WRVIMIDPVDGMNRNAA 147 S + RT +I+ F + +G+ +++I++D D M +A Sbjct: 81 ASDDRGINVVRT--------KIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQ 132 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 NAL +++E + F I + I+ + SRC +F LSE Sbjct: 133 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 176 >gi|158255650|dbj|BAF83796.1| unnamed protein product [Homo sapiens] Length = 255 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 34 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93 Query: 191 EN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 94 PELMVPRLEHVVEEEKVDISEDGMKALVTLSS-GDMRRALNILQ 136 >gi|146318316|ref|YP_001198028.1| DNA polymerase III subunit delta' [Streptococcus suis 05ZYH33] gi|145689122|gb|ABP89628.1| ATPase involved in DNA replication [Streptococcus suis 05ZYH33] Length = 294 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 VI D IR + S + +V +I + M+ NA+N+LLK +EE + L++ Sbjct: 85 NVIKTDTIRELVKNFSQSGFESNKQVFIIRDAEKMHANASNSLLKVIEEAQSAIHIFLLT 144 Query: 168 HASPTILSTIRSRCLSIKF 186 + +L TI+SR I F Sbjct: 145 NQEEAVLPTIKSRTQIIGF 163 >gi|114647203|ref|XP_001156284.1| PREDICTED: replication factor C 5 isoform 1 [Pan troglodytes] Length = 255 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F L+ Sbjct: 34 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93 Query: 191 EN----NLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 L +E+ K+ + D + V +++ G + RA+ IL Sbjct: 94 PELMVPRLEHVVEEEKVGISEDGMKALVTLSS-GDMRRALNILQ 136 >gi|317011430|gb|ADU85177.1| DNA polymerase III subunit delta' [Helicobacter pylori SouthAfrica7] Length = 218 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 13/79 (16%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC-------------LSIKFNSLSEN 192 A NALLK LEEPP V FI+ + + +L+TI+SR L++ + L Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDRRQKIPLKPLNLDLSRLDLK 141 Query: 193 NLYKALEQLKIMGWDSKRD 211 ++Y L++L +DS+ + Sbjct: 142 DIYAFLKELDKENFDSREN 160 >gi|54020349|ref|YP_115633.1| DNA polymerase III subunit delta' [Mycoplasma hyopneumoniae 232] gi|53987522|gb|AAV27723.1| putative DNA polymerase III subunit [Mycoplasma hyopneumoniae 232] gi|312601235|gb|ADQ90490.1| DNA polymerase III delta subunit [Mycoplasma hyopneumoniae 168] Length = 290 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ ++ ++ + + N+LLK LE+PP+ F+LI+ + ++ TI SRC F Sbjct: 85 KIFILKNIEKTHISLLNSLLKILEDPPKSTYFLLIAKSQNLVIPTIVSRCQVFWFTEFDR 144 Query: 191 ENNLYKALEQLKIMGWDS 208 + +L K L+Q K ++S Sbjct: 145 QKDLKKKLDQWKETPYNS 162 >gi|144575351|gb|AAZ53634.2| DNA polymerase III delta subunit [Mycoplasma hyopneumoniae 7448] Length = 290 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ ++ ++ + + N+LLK LE+PP+ F+LI+ + ++ TI SRC F Sbjct: 85 KIFILKNIEKTHISLLNSLLKILEDPPKSTYFLLIAKSQNLVIPTIVSRCQVFWFTEFDR 144 Query: 191 ENNLYKALEQLKIMGWDS 208 + +L K L+Q K ++S Sbjct: 145 QKDLKKKLDQWKETPYNS 162 >gi|85110603|ref|XP_963541.1| activator 1 38 kDa subunit [Neurospora crassa OR74A] gi|30913260|sp|Q8X082|RFC5_NEUCR RecName: Full=Replication factor C subunit 5; Short=Replication factor C5; AltName: Full=Probable activator 1 subunit 5 gi|18376021|emb|CAB91755.2| probable replication factor C 38K chain [Neurospora crassa] gi|28925224|gb|EAA34305.1| activator 1 38 kDa subunit [Neurospora crassa OR74A] Length = 352 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D + R+A AL +++E+ + IL+++++ I++ IRSRCL ++ + + Sbjct: 129 FKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPT 188 Query: 191 ENNLYKAL-EQLKIMGW 206 + L K GW Sbjct: 189 HKEICDVLASSAKKEGW 205 >gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera] Length = 328 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 36/190 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HE+I K ++++ + H LLF G G GK + A + + F+ + M Sbjct: 25 LISHEEIIKTINKFIDENLLPH-LLFYGPPGTGKTSTILACARKLYTSAQFNSMVLEMNA 83 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D + Q+ S A +Y K+G + Sbjct: 84 SDDRGINIVRGQILSFASTGTMY-------KSG--------------------------F 110 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F LS Sbjct: 111 KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSI 170 Query: 192 NNLYKALEQL 201 + + L+ + Sbjct: 171 DQILPRLDTI 180 >gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana) tropicalis] gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana) tropicalis] gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana) tropicalis] Length = 335 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 46/290 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L H+DI + ++ ++ H LLF G G GK + A + ++ +F+ Sbjct: 29 LISHQDILSTIQRFISEDKLPH-LLFYGPPGTGKTSTILACAKQLYKDREFNS------- 80 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYW 131 + LN + +D +R + + + T + Sbjct: 81 ---------------------MVLELNASDDRG-----IDIVRGPILSFASTRTIFKKGF 114 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A NAL + +E+ + F LI + I+ ++SRC +F LS Sbjct: 115 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSP 174 Query: 192 NNLYKALEQ-LKIMGWDSKRDFVK---IAAYGSVARAIKILHYDCDKIISSYIDLIHIPR 247 + LE +K D D +K + G + R++ IL D ++ Sbjct: 175 EMMVPRLEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCT 234 Query: 248 QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I D +L++D A+ ++E K+ K AL L E Sbjct: 235 GHPLRSDIANILDWMLNKDFTSAYKNIMEL------KTLKGLALHDILTE 278 >gi|9453897|dbj|BAB03292.1| replication factor C small subunit precursor [Pyrococcus furiosus DSM 3638] Length = 268 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L Sbjct: 52 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 111 Query: 191 ENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 + ++ K L + + G + + ++ Y G + RAI IL Sbjct: 112 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 154 >gi|289614474|emb|CBI58758.1| unnamed protein product [Sordaria macrospora] Length = 352 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D + R+A AL +++E+ + IL+++++ I++ IRSRCL ++ + + Sbjct: 129 FKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPT 188 Query: 191 ENNLYKAL-EQLKIMGW 206 + L K GW Sbjct: 189 HQEICDVLASSAKKEGW 205 >gi|71893608|ref|YP_279054.1| DNA polymerase III subunit delta' [Mycoplasma hyopneumoniae J] Length = 270 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ ++ ++ + + N+LLK LE+PP+ F+LI+ + ++ TI SRC F Sbjct: 65 KIFILKNIEKTHISLLNSLLKILEDPPKSTYFLLIAKSQNLVIPTIVSRCQVFWFTEFDR 124 Query: 191 ENNLYKALEQLKIMGWDS 208 + +L K L+Q K ++S Sbjct: 125 QKDLKKKLDQWKKTPYNS 142 >gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138] gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata] Length = 352 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F SL Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLD 193 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +N AL++LK + ++ + VK+ A GS+ + I D + I+ Sbjct: 194 SSN---ALQRLK---YVAEEEGVKVKA-GSLETILDISAGDLRRAIT 233 >gi|294660634|ref|NP_853502.2| DNA polymerase III subunit delta' [Mycoplasma gallisepticum str. R(low)] gi|284812297|gb|AAP57070.2| DNA polymerase III subunit delta' [Mycoplasma gallisepticum str. R(low)] gi|284931002|gb|ADC30941.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum str. R(high)] Length = 260 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ +I ++ N+ + N+LLK L EP + IL + +L TI SRC+ NS E Sbjct: 90 KIYIIHQIEKANKESLNSLLKFLGEPKDNTIGILTTRKPYGVLDTIVSRCVRYSTNSYEE 149 Query: 192 ----NNLY--KALEQLKIMGW 206 N Y K LE +KIM + Sbjct: 150 KVEFKNKYKPKELELIKIMFY 170 >gi|222152617|ref|YP_002561792.1| DNA polymerase III subunit delta' [Streptococcus uberis 0140J] gi|222113428|emb|CAR41107.1| putative DNA polymerase III, delta' subunit [Streptococcus uberis 0140J] Length = 291 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VI + ++ + S T +V +I + M+ NAAN+LLK +EEP L+++ Sbjct: 83 VIKTETVKEMMKNFSRTGYESEKQVFIIKDCEKMHVNAANSLLKYIEEPQSASYIFLLTN 142 Query: 169 ASPTILSTIRSR 180 +L TI+SR Sbjct: 143 DDNLVLPTIKSR 154 >gi|254563705|ref|YP_003070800.1| hypothetical protein METDI5378 [Methylobacterium extorquens DM4] gi|254270983|emb|CAX26989.1| hypothetical protein METDI5378 [Methylobacterium extorquens DM4] Length = 806 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 15/164 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQNPD 63 A+ P +++FG + + LS GR+ ++L G G GK TL YA + + PD Sbjct: 103 AYRPHTFKKVFGQDSVVACLSGLIARGRIGRSILLHGAVGSGKTTLARIYARALNCEAPD 162 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +P C + C ++ + +F Y+++ + G +++ R Sbjct: 163 PRASPCYAC--EACG----RLGEKPIKEFE--EYNVSRRGGG------REDVERFLSTHD 208 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 + +R++ D + R A + LL +E P + FI + Sbjct: 209 RPVHGAKYRILFFDEAHALTREACDLLLLPVESPQHAIRFIFAT 252 >gi|15221697|ref|NP_176504.1| replication factor C 40 kDa, putative [Arabidopsis thaliana] gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana] gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana] gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana] Length = 333 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +V+++D D M A AL +++E F L + Sbjct: 92 IDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACN 151 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 152 TSAKIIEPIQSRCALVRFSRLSDQQILGRL 181 >gi|225426826|ref|XP_002283246.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera] Length = 330 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T +G +++++D D M A AL +++E F L + Sbjct: 89 IDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACN 148 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 149 ISSKIIEPIQSRCAIVRFSRLSDQEILGRL 178 >gi|254457147|ref|ZP_05070575.1| DNA polymerase III delta prime subunit HolB [Campylobacterales bacterium GD 1] gi|207085939|gb|EDZ63223.1| DNA polymerase III delta prime subunit HolB [Campylobacterales bacterium GD 1] Length = 204 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 28/43 (65%) Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 N + N+LLK LEEPP+ + FI+IS +L T+RSR IK Sbjct: 70 NAVSQNSLLKVLEEPPRNIEFIIISPTKSNLLPTVRSRLPIIK 112 >gi|72080599|ref|YP_287657.1| DNA polymerase III subunit delta' [Mycoplasma hyopneumoniae 7448] Length = 270 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ ++ ++ + + N+LLK LE+PP+ F+LI+ + ++ TI SRC F Sbjct: 65 KIFILKNIEKTHISLLNSLLKILEDPPKSTYFLLIAKSQNLVIPTIVSRCQVFWFTEFDR 124 Query: 191 ENNLYKALEQLKIMGWDS 208 + +L K L+Q K ++S Sbjct: 125 QKDLKKKLDQWKETPYNS 142 >gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE] gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE] Length = 332 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 53/208 (25%) Query: 1 MIDRAFDPVYNQR--------LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGF 52 +I+ A D V+ ++ + G E I + L Y +G + H LLF G G+GK Sbjct: 8 VIEMASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPH-LLFSGPPGVGKTACAV 66 Query: 53 RYA----GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT 108 A G QN +F L+ S + G Sbjct: 67 ALAKDMFGDTWQN-----------------------------NFTELNAS--DERG---- 91 Query: 109 VITVDEIRRIRYFLSLTANTG--YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D +R + TA G +++I +D D + +A +AL +++E FI+ Sbjct: 92 ---IDVVRNNIKNFARTAPLGDARFKIIFLDEADALTSDAQSALRRTMERYTATCRFIIS 148 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNL 194 + S I+ I+SRC +F L ++ Sbjct: 149 CNYSSKIIEPIQSRCAVYRFGPLGPKDI 176 >gi|144227538|gb|AAZ44343.2| putative DNA polymerase III delta subunit [Mycoplasma hyopneumoniae J] Length = 290 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS- 190 ++ ++ ++ + + N+LLK LE+PP+ F+LI+ + ++ TI SRC F Sbjct: 85 KIFILKNIEKTHISLLNSLLKILEDPPKSTYFLLIAKSQNLVIPTIVSRCQVFWFTEFDR 144 Query: 191 ENNLYKALEQLKIMGWDS 208 + +L K L+Q K ++S Sbjct: 145 QKDLKKKLDQWKKTPYNS 162 >gi|330945331|gb|EGH46948.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. pisi str. 1704B] Length = 327 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 NALLK+LEEPP V FIL + + +TI SRCL +++ + + L + Sbjct: 10 NALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTPERVVEHLTHV 63 >gi|328855373|gb|EGG04500.1| hypothetical protein MELLADRAFT_37376 [Melampsora larici-populina 98AG31] Length = 363 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 23/204 (11%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 LF G G GK T R A + + A +R+ +P +++ + +L Sbjct: 42 LFYGPSGAGKKT---RIAATLRELFGPGAAKLRIEQRVFMTPSRRRLEVQIIESNYHLE- 97 Query: 98 SLNPKT-GKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLE 155 L P +W + D ++ + L + ++V++I D + +A AL +++E Sbjct: 98 -LTPADLAQWDRSVIQDILKEVGGTTQLDSTASRKFKVVVIHCADQLTLDAQAALRRTME 156 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVK- 214 + IL ++++ I+ IRSRCL ++ + + + K L+ + SK DF++ Sbjct: 157 RHTSSLRLILCANSTSKIIGPIRSRCLLLRVGAPHPDQIVKVLQSVA-----SKEDFIRQ 211 Query: 215 ----------IAAYGSVARAIKIL 228 ++A G++ +AI L Sbjct: 212 FPEETAMSIALSAEGNLRKAILTL 235 >gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis] gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis] Length = 335 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 94 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACN 153 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 154 TSAKIIEPIQSRCAIVRFSKLSDQEILGRL 183 >gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces japonicus yFS275] gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces japonicus yFS275] Length = 344 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 38/199 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + G+ED L G M H ++ G GIGK T Sbjct: 29 YRPVVLDDIVGNEDTIARLKVIARDGNMPH-MIISGMPGIGKTT---------------- 71 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 +C +H L Y L R + D +R +I+ F Sbjct: 72 ---SVLC------------LAHQLLGSAYREGVLELNASDERGI---DVVRNKIKGFAQK 113 Query: 125 TAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 N G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 114 KVNLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 173 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L+E + K L ++ Sbjct: 174 ILRYSRLNEQQIQKRLSEI 192 >gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 28/189 (14%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L +G + H LL G G GK + A + PDF + V N Sbjct: 44 QEEVVQSLQGVLKTGNLPH-LLLHGPPGTGKTSTIIALAKQLF-GPDFWRQRVLELNASD 101 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 + + + F + NP G FL + +++I++ Sbjct: 102 DRGI--NVVRNKVKKFAEQIVAKNPNPG----------------FLCPS-----YKIIIL 138 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK 196 D D M +A +AL + +E+ F +I + I+ + SRC+ +F S+ EN + Sbjct: 139 DEADSMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPEN---E 195 Query: 197 ALEQLKIMG 205 +E+LK + Sbjct: 196 QIERLKFVA 204 >gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS 118893] gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS 118893] Length = 397 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 35/222 (15%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVESNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A ++ S P +G + G +++ Sbjct: 120 DRGIDVVREQIKTFASTKQIF---STAPSSG---------------------SGLGAFKL 155 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 156 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQD 215 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + EQ++I D+ VK+ + G + RA+ +L Sbjct: 216 IKRLVDTVIEKEQVQIQP-DAIDSLVKL-SKGDMRRALNVLQ 255 >gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa] gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa] Length = 330 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 89 IDVVRNKIKMFAQKKVTLPPGQHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACN 148 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 149 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 178 >gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia] gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia] Length = 326 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +++E+ + F LI + I+ I SRC +F +L Sbjct: 135 FKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALG 194 Query: 191 ENNLYKALEQLK 202 E+ K +++LK Sbjct: 195 ED---KVIDRLK 203 >gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 342 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 42/184 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + H +LF G G GK T A H L P+ K+ V Sbjct: 26 QEEVVRVLTNTLETSNCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY------ 130 LN + V+ +I+ F ++ +G Sbjct: 77 --------------------LELNASDDRGINVVRT----KIKNFAAVAVGSGQRAGGYP 112 Query: 131 ---WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++I++D D M +A NAL +++E + F + + I+ + SRC +F Sbjct: 113 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFK 172 Query: 188 SLSE 191 LSE Sbjct: 173 PLSE 176 >gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo sapiens and is a member of PF|00004 ATPases associated with various cellular activities [Arabidopsis thaliana] Length = 319 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 42/184 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + H +LF G G GK T A H L P+ K+ V Sbjct: 26 QEEVVRVLTNTLQTADCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT-----GY- 130 L L+ S + RT +I+ F ++ + GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKDFAAVAVGSNHRQSGYP 112 Query: 131 ---WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +++I++D D M +A NAL +++E + F I + I+ + SRC +F Sbjct: 113 CPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172 Query: 188 SLSE 191 LSE Sbjct: 173 PLSE 176 >gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] gi|158513488|sp|A3MS28|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548] Length = 326 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+F+ V + E+++ L ++ +G + H LLF G G GK T+ Sbjct: 13 RSFEEVVD-----LEEVKARLREFVKAGNLPH-LLFYGPPGTGKTTMAL----------- 55 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + L+ + +L R + + E R++ F + Sbjct: 56 --------------------VLARELYGEYWRENTLELNASDERGIGVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E Q FIL+++ I+ I SRC Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRC 152 Query: 182 LSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKILH 229 +F+ + + + + L ++ + G + K D + + + G + +AI +L Sbjct: 153 AVFRFSPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQ 204 >gi|42560605|ref|NP_975056.1| DNA polymerase III delta subunit [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492101|emb|CAE76698.1| DNA polymerase III delta subunit [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320673|gb|ADK69316.1| DNA polymerase III, delta prime subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 246 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 110 ITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 IT EI + +SL+A T + +I + +AAN+LLK LEEPP IL+++ Sbjct: 78 ITNQEILDLINKMSLSATATQNIKFFIIKNAQNLKLSAANSLLKFLEEPPINTYGILLTN 137 Query: 169 ASPTILSTIRSRC 181 I++TI SRC Sbjct: 138 NYSEIINTIWSRC 150 >gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina 98AG31] Length = 349 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F + +T G ++I++D D M A AL +++E F L + Sbjct: 104 IDVVRNKIKTFANTKVTLPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACN 163 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ LS+ + K L ++ Sbjct: 164 FSSKIIEPIQSRCAILRYGKLSDQEILKRLVEI 196 >gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex] Length = 343 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E + F L + Sbjct: 100 IDVVRNKIKMFAQQKVTLPKGRQKIVILDEADSMTEGAQQALRRTMELFSKTTRFALACN 159 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALEQLKI 203 S I+ I+SRC I++ L++ L K +E K+ Sbjct: 160 TSDKIIEPIQSRCAMIRYGKLTDAQILQKMIEVCKL 195 >gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1] gi|110287812|sp|Q2FQT9|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1] Length = 323 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 37/198 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G ++I + L Y M H LLF G G GK T A Sbjct: 12 YRPRVLEDIIGQQEIIERLRSYVAKREMPH-LLFTGNAGTGKTTAAVALA---------- 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 +F + +N + +D +R +I+ F Sbjct: 61 ------------------------REFFGEDWQMNFRELNASDERGIDVVRNQIKQFART 96 Query: 125 TANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + G ++++ +D D + +A +AL +++E Q FIL + S I+ I+SRC Sbjct: 97 SPFGGSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAI 156 Query: 184 IKFNSLSENNLYKALEQL 201 +F L + + ++++ Sbjct: 157 YRFRPLGRQAVSEMVKRI 174 >gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C (activator 1) 4, 37kDa, partial [Taeniopygia guttata] Length = 294 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 67/130 (51%), Gaps = 15/130 (11%) Query: 116 RRIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +++ F LTA+ + ++++++D D M A AL +++E+ + F LI Sbjct: 51 EKVKAFAQLTASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 110 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + I+ + SRC +F LS+ +++Q +++ S+++ VKI+ +++ +K+ Sbjct: 111 NYISRIIEPLTSRCSKFRFKPLSD-----SIQQQRLLDV-SEKEHVKISNE-AISYLVKV 163 Query: 228 LHYDCDKIIS 237 D K I+ Sbjct: 164 SEGDLRKAIT 173 >gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] Length = 322 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 54/236 (22%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+F+ V + E+++ L ++ +G M H LLF G G GK T+ A Sbjct: 13 RSFEEVVD-----LEEVKARLKEFVKAGNMPH-LLFYGPPGTGKTTMALVLA-------- 58 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 L+ + +L R + + E R++ F + Sbjct: 59 -----------------------RELYGDAWRENTLELNASDERGINVIRE--RVKEF-A 92 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E FIL+++ I+ I+SRC Sbjct: 93 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSRC 152 Query: 182 LSIKFNSLSENNLYKAL------EQLKIM--GWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L + + L E +KI D+ DF + G + RAI L Sbjct: 153 AIFRFSPLPKEAVLSRLRFIAEQEGVKISQEALDAIFDFTQ----GDMRRAITALQ 204 >gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818] Length = 345 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%) Query: 117 RIRYFLSLTANTGY-------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +I+ F S + + G +++I++D D M A +AL +++E+ F LI + Sbjct: 107 KIKTFASTSVSKGVDGYPCPPFKIIILDEADAMTAAAQSALRRTMEKYSNVTRFCLICNY 166 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQLK 202 I+ + SRC +F LS + L L+ ++ Sbjct: 167 ISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIR 199 >gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36] gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36] Length = 364 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 29/218 (13%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L+Q SG + H +LF G G GK + A L P+ K+ V N Sbjct: 47 KVLTQTIKSGNLPH-MLFYGPPGTGKTSTILALAKE-LYGPNLYKSRVLELNASDERGI- 103 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN--TGYWRVIMIDPV 139 + + +F L+ S NP T +++ AN +++I++D Sbjct: 104 -SIVREKIKNFARLTIS-NP---------TKEDL----------ANYPCPPYKIIILDEA 142 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D M +A +AL +++E F+LI + I+ I SRC +F L+ N A Sbjct: 143 DSMTYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNEN---AQL 199 Query: 200 QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +LK +G F K + +KI D K I+ Sbjct: 200 RLKYIGQQENLRFDKGQEDQVIQELLKISGGDLRKAIT 237 >gi|222629391|gb|EEE61523.1| hypothetical protein OsJ_15825 [Oryza sativa Japonica Group] Length = 306 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 80 VTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 139 Query: 184 IKFNSLSENNLYKAL 198 ++F+ LS+ + L Sbjct: 140 VRFSRLSDQEILGRL 154 >gi|219112623|ref|XP_002178063.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410948|gb|EEC50877.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 361 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/78 (24%), Positives = 43/78 (55%) Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++ +++ VD ++R A AL +++E+ IL+ + ++ +RSRCL I+ Sbjct: 132 SGAATFKTVVLVEVDRLSRQAQAALRRTMEKYASTCRLILVCNNQSKVIEPVRSRCLGIR 191 Query: 186 FNSLSENNLYKALEQLKI 203 + +E+ + K L+ + I Sbjct: 192 VAAPTEDEICKVLKSVSI 209 >gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens] gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens] gi|1703052|sp|P35249|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName: Full=Activator 1 37 kDa subunit; Short=A1 37 kDa subunit; AltName: Full=Activator 1 subunit 4; AltName: Full=Replication factor C 37 kDa subunit; Short=RF-C 37 kDa subunit; Short=RFC37 gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens] gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens] gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens] gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens] gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens] gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens] gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct] gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct] gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct] gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct] gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo sapiens] gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo sapiens] gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] Length = 363 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ +K++ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AKKENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata] gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata] Length = 339 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 32/179 (17%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + H +LF G G GK T A H L P+ K+ V N Sbjct: 26 QEEVVRVLTNTLQTADCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRVLELNASD 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----WR 132 + + DF ++ N + +GY ++ Sbjct: 84 DRGI--NVVRTKIKDFAAVAVGSNHR------------------------QSGYPCPSFK 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +I++D D M +A NAL +++E + F I + I+ + SRC +F LSE Sbjct: 118 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 176 >gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Pongo abelii] gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Pongo abelii] Length = 363 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ +K++ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AKKENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|223039650|ref|ZP_03609936.1| DNA polymerase III subunit delta [Campylobacter rectus RM3267] gi|222879033|gb|EEF14128.1| DNA polymerase III subunit delta [Campylobacter rectus RM3267] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 A N+LLK +EEPP+ + FI+ + +L T+RSR ++EN L K +Q + G Sbjct: 68 AQNSLLKIIEEPPKNIFFIIACESKNMLLPTVRSRL-------VTENRLIK--KQREKTG 118 Query: 206 WDSKR-DFVKIAAY----GSVARAIKILHYDCDKIISS 238 + KR + +I A+ ++ R+ K+ D ++I++ Sbjct: 119 LNYKRLELKEICAFIDEKSALERSEKLGKNDLKELIAA 156 >gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis] Length = 340 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 99 IDVVRNKIKMFAQQKVTLPLGRHKIVILDEADSMTSGAQQALRRTMEIYSSTTRFALACN 158 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++++ LS+ L + L Sbjct: 159 QSSKIIEPIQSRCAIVRYSKLSDKELLQRL 188 >gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct] gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct] gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct] gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct] gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct] Length = 364 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ +K++ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AKKENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|156383529|ref|XP_001632886.1| predicted protein [Nematostella vectensis] gi|156219948|gb|EDO40823.1| predicted protein [Nematostella vectensis] Length = 355 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/196 (20%), Positives = 92/196 (46%), Gaps = 8/196 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H+D+ L + SG H L++ G G GK T R + + Sbjct: 8 YRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVY-GPSGAGKKT---RITCILRELYGSG 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR--YFLS 123 +++ + +P K++ + +L + + G + V+ + ++ + L Sbjct: 64 VEKLKIEHHSFTTPSNKKVEISTIGSIFHLEVNAS-DVGIYDRVVVQELLKNTAQAHSLE 122 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 L+A+ + +V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL Sbjct: 123 LSAHRDF-KVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLG 181 Query: 184 IKFNSLSENNLYKALE 199 ++ + S + + L+ Sbjct: 182 VRIPAPSVEEICQILQ 197 >gi|303322344|ref|XP_003071165.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110864|gb|EER29020.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta SOWgp] Length = 283 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 33/199 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV+ + G+ + + L G M H ++ G GIGK T Sbjct: 34 YRPVFLDDVVGNTETIERLKIIARDGNMPH-VIISGMPGIGKTT---------------- 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +C +QM + + LN + R + +D +R RI+ F Sbjct: 77 ---SILC-------LARQMLGDVYKEAVL---ELNASDERVRFLAGIDVVRNRIKGFAQK 123 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F + S I+ ++SRC Sbjct: 124 KVTLPPGKHKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCA 183 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L++ + K L Q+ Sbjct: 184 ILRYSRLTDAQIVKRLMQI 202 >gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo sapiens] gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens] Length = 303 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ +K++ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AKKENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus yFS275] gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus yFS275] Length = 338 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 35/189 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + H+DI L ++ + R+ H +LF G G GK + A + P+F Sbjct: 34 VVAHKDIIATLEKFISTNRVPH-MLFYGPPGTGKTSTILACANRIY-GPNFRN------- 84 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN-TGYWR 132 + M +A D R + V E +I+ F S + ++ Sbjct: 85 --------QVMELNASDD---------------RGIDVVRE--QIKSFASTKQIFSSAFK 119 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M A NAL + +E+ + V F +I + I I+SRC +F L Sbjct: 120 LIILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPIT 179 Query: 193 NLYKALEQL 201 + K ++++ Sbjct: 180 EIEKKVDEV 188 >gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+] gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+] Length = 389 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 32/231 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ S R+ H LL+ G G GK + A + + Sbjct: 49 YRPVSLDDVSGHQDILATINKFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGAENM- 106 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSL 124 +QM L L+ S + R I T ++I + Sbjct: 107 ----------------RQM-------VLELNASDDRGIDVVREQIKTFASTKQIFSLGAS 143 Query: 125 TANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T+ TG +++I++D D M A AL + +E+ F +I++ S + + SRC Sbjct: 144 TSKTGLAGFKLIILDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCT 203 Query: 183 SIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L E ++ K +++ I D + + G + RA+ +L Sbjct: 204 RFRFSPLKERDIRVLVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVLQ 254 >gi|116515152|ref|YP_802781.1| DNA polymerase III, d' subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257006|gb|ABJ90688.1| DNA polymerase III, d' subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 325 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I ++ + A+++LLK+LEEPP+ +F L + I TI+SR + N+ Sbjct: 107 GKEKIIYFQNINYLTPEASSSLLKTLEEPPKNTIFFLRTTNISKIDHTIKSRSIIYYINT 166 Query: 189 LSEN 192 L EN Sbjct: 167 LDEN 170 >gi|50286125|ref|XP_445491.1| hypothetical protein [Candida glabrata CBS 138] gi|49524796|emb|CAG58402.1| unnamed protein product [Candida glabrata] Length = 355 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 87/191 (45%), Gaps = 10/191 (5%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS-KAPVRMCNPD 75 ++D+ +FLS + R LL G G GK T + + + K VR Sbjct: 19 NDDLTRFLSSLAMNPRDLPHLLIYGPNGSGKKTRCMALLESIFGSQVYRLKIDVRRF--- 75 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-----TVDEIRRIRYFLSLTANTGY 130 +P +++ + + +L + + R VI V ++ ++ + + Sbjct: 76 -VTPSNRKLELNVVSSPYHLEITPSDMGNNDRVVIQELLKEVAQMEQVDFQDGSSGIANR 134 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ ++I+ + + R+A AL +++E+ + + I++ + +I+S IRSRCL I+ + Sbjct: 135 FKCVIINEANSLTRDAQAALRRTMEKYSKNIRLIMLCDSMSSIISPIRSRCLMIRSPAPQ 194 Query: 191 ENNLYKALEQL 201 ++ K L+ + Sbjct: 195 MKDITKTLKDV 205 >gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] Length = 309 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 42/211 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + G++ + +S S M H LLF G G GK T Sbjct: 8 YRPNEVQDVIGNQMTVELVSLIIDSKDMPH-LLFAGPPGTGKTT---------------- 50 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 C+ + + + L L+ S RT I RRI+ Sbjct: 51 -----------CAKILARKLLPSKEGLLELNASDERGIETVRTTIKSFAQRRIK------ 93 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI++D D M A A+ + +E + FILI + I I+SRC ++ Sbjct: 94 --DCSFKVIILDEADSMTTAAQQAMRRVMEVHSSECRFILICNTLTKIFEPIQSRCAILR 151 Query: 186 FNSLSENNLYKALEQLKIMGWDSKRDFVKIA 216 F+ + + + + L ++ SK + +KI+ Sbjct: 152 FDRIENSMILERLREI------SKDEGIKIS 176 >gi|17541988|ref|NP_500069.1| RFC (DNA replication factor) family member (rfc-2) [Caenorhabditis elegans] gi|2662601|gb|AAB88360.1| Rfc (dna replication factor) family protein 2 [Caenorhabditis elegans] Length = 334 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYF--LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 87 IDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ LS L ++++ Sbjct: 147 QSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEV 179 >gi|18395021|ref|NP_564148.1| emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana] gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana] gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana] gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana] gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana] Length = 339 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 32/179 (17%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + H +LF G G GK T A H L P+ K+ V N Sbjct: 26 QEEVVRVLTNTLQTADCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRVLELNASD 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----WR 132 + + DF ++ N + +GY ++ Sbjct: 84 DRGI--NVVRTKIKDFAAVAVGSNHR------------------------QSGYPCPSFK 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +I++D D M +A NAL +++E + F I + I+ + SRC +F LSE Sbjct: 118 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 176 >gi|14590058|ref|NP_142122.1| replication factor C small subunit [Pyrococcus horikoshii OT3] gi|42559333|sp|O57852|RFCS_PYRHO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Pho RFC intein gi|3256498|dbj|BAA29181.1| 855aa long hypothetical replication factor C subunit [Pyrococcus horikoshii OT3] Length = 855 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L Sbjct: 638 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 697 Query: 191 ENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 + ++ K L + + G + + ++ Y G + RAI IL Sbjct: 698 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 740 >gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST] gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST] Length = 341 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 102 IDVVRSKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 161 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 S I+ I+SRC ++F+ LS+ Sbjct: 162 TSEKIIEPIQSRCAMLRFSKLSD 184 >gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A] gi|42559497|sp|Q8TSX5|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans C2A] Length = 338 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 68 PVRMCNPDPCSPFVKQMASH-ALHDFLYLSYSLNPKTGK----------------WRTVI 110 PVR+ ++++ S+ A + +L +S P GK WR Sbjct: 21 PVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENF 80 Query: 111 T---------VDEIR-RIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 T +D +R +I+ F G +++I +D D + +A +AL +++E Sbjct: 81 TELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLDEADALTADAQSALRRTMERFSS 140 Query: 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 FIL + S I+ I+SRC +F LS+ + + LE Sbjct: 141 NCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLE 180 >gi|307721616|ref|YP_003892756.1| DNA polymerase III subunit delta' [Sulfurimonas autotrophica DSM 16294] gi|306979709|gb|ADN09744.1| DNA polymerase III subunit delta' [Sulfurimonas autotrophica DSM 16294] Length = 205 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A N+LLK LEEPP+ + FI+IS +L T+RSR +K Sbjct: 74 AQNSLLKLLEEPPKNIEFIIISPTKSNLLPTVRSRLPILK 113 >gi|281204078|gb|EFA78274.1| replication factor C subunit [Polysphondylium pallidum PN500] Length = 346 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 28/210 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGK-----ATLGFRYAG 56 ID+ + P ++ H+DI + L G H L++ G G GK ATL Y Sbjct: 4 IDK-YKPTSLDQMDYHKDISENLKNMILGGDFPHLLVY-GPSGAGKKTRVMATLKEIYGA 61 Query: 57 HVL----QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP-KTGKWRTVIT 111 + L +N F +P S H +NP + G + ++ Sbjct: 62 NCLKVKIENKTFK-------HPSSSKSIQVTTVSSPYH------IEINPGEAGSYDRLVI 108 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 I+ I + + + V++++ VD ++++A +AL +++E+ IL ++ Sbjct: 109 QSIIKDIAQSPPIDSQSF---VVILNEVDKLSKDAQHALRRTMEKYANFCRLILCCDSTS 165 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ IRSRC+ I+ + ++ + K L+ + Sbjct: 166 KVIDPIRSRCMGIRVPAPTKEEIVKVLQNV 195 >gi|288576349|ref|ZP_06394328.1| DNA polymerase III, gamma and tau subunit [Neisseria mucosa ATCC 25996] gi|288565716|gb|EFC87276.1| DNA polymerase III, gamma and tau subunit [Neisseria mucosa ATCC 25996] Length = 602 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE----NNLYKA 197 ++++A NA+LK+LEEPP+ V FIL + + T+ SRCL +++ ++L Sbjct: 2 LSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTSQQVADHLAHV 61 Query: 198 LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 L I + + AA GS+ A+ +L Sbjct: 62 LNNENIAYEPAALQLLGRAAAGSMRDALSLL 92 >gi|194706108|gb|ACF87138.1| unknown [Zea mays] Length = 331 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 90 LDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 149 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 150 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 179 >gi|331215451|ref|XP_003320406.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309299396|gb|EFP75987.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 382 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 62/270 (22%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E K LS+ + H +LF G G GK + A + P+ Sbjct: 37 YRPKSIESVQGQEGTTKILSKALNRADLPH-MLFYGPPGTGKTSTILALARDLF-GPELM 94 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K+ V N R + V E +I+ F ++ Sbjct: 95 KSRVLELN-----------------------------ASDERGISVVRE--KIKNFAKVS 123 Query: 126 ---ANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 A +GY +++I++D D M ++A +AL + +E + F LI + I+ I Sbjct: 124 ISPATSGYPCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIV 183 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SRC +F LS + L ++ S +IKI D +IS Sbjct: 184 SRCSKFRFKPLSVSGTRSKLTEI------------------STLESIKISDNVLDSLIS- 224 Query: 239 YIDLIHIPRQEYALQKMQQIA--DELLSQD 266 I + R LQ ++A DE+L+QD Sbjct: 225 -ISAGDLRRSITFLQSASKLATSDEILAQD 253 >gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus] Length = 363 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ ++R+ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AERENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|148226246|ref|NP_001089570.1| replication factor C (activator 1) 3, 38kDa [Xenopus laevis] gi|67514211|gb|AAH98179.1| MGC115007 protein [Xenopus laevis] Length = 356 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKAT-----LGFRYAGHVLQ 60 + P +L H+D L G H L+F G G GK T L Y V + Sbjct: 8 YRPSSLSKLDYHKDQASQLRNLVQCGDFPHLLVF-GPSGAGKKTRIMCLLRELYGAGVEK 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIR 119 +R+ + +P K++ + +L +NP G V+ + ++ + Sbjct: 67 --------LRIEHQTITTPSKKKIEISTIASNYHLE--VNPSDAGNSDRVVIQELLKTVA 116 Query: 120 YFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L +T ++V+++ VD + ++A +AL +++E+ IL +++ +++ IR Sbjct: 117 QSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIR 176 Query: 179 SRCLSIKFNSLSENNLYKAL 198 SRCL+++ + S + + L Sbjct: 177 SRCLAVRVPAPSTDEICTVL 196 >gi|298675294|ref|YP_003727044.1| AAA ATPase central domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288282|gb|ADI74248.1| AAA ATPase central domain protein [Methanohalobium evestigatum Z-7303] Length = 499 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 50/202 (24%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 D V N++ E ++K+ ++ + A++ G GIGK + + A Sbjct: 18 DVVGNKKAL--ESLKKWAEEWLDNVPEKRAVILHGRAGIGKTSTAYALA----------- 64 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 +DF + LN + T + I +I S T Sbjct: 65 -----------------------NDFGWEVIELNASDQR-----TAEVINKIAGSASKTG 96 Query: 127 N---TGYWRVIMIDPVDGM----NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +G R+I++D D + +R A A+ +++++ Q V +LI++ + S+IR+ Sbjct: 97 SLFGSGGKRLIVLDEADNLHGTNDRGGARAISETIKKTDQPV--VLIANDVYGVASSIRN 154 Query: 180 RCLSIKFNSLSENNLYKALEQL 201 +CL IKFN++ ++ +L+++ Sbjct: 155 QCLEIKFNNVQTRSIAASLKKI 176 >gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group] gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group] gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group] Length = 335 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G +++++D D M A AL +++E F L + S I+ I+SRC Sbjct: 109 VTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 168 Query: 184 IKFNSLSENNLYKAL 198 ++F+ LS+ + L Sbjct: 169 VRFSRLSDQEILGRL 183 >gi|109948122|ref|YP_665350.1| DNA polymerase III subunit delta' [Helicobacter acinonychis str. Sheeba] gi|109715343|emb|CAK00351.1| DNA polymerase III delta subunit [Helicobacter acinonychis str. Sheeba] Length = 217 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 13/79 (16%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRC-------------LSIKFNSLSEN 192 A NALLK LEEPP V FI+ + + +L+TI+SR L+ + L Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDRRQKIPLKPLNFDLSKLDLK 141 Query: 193 NLYKALEQLKIMGWDSKRD 211 ++Y L +L +DS+ + Sbjct: 142 DIYAFLRELDKENFDSREN 160 >gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group] gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group] gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group] Length = 335 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 94 LDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 153 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 154 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 183 >gi|260655330|ref|ZP_05860818.1| putative DNA polymerase III, delta prime subunit [Jonquetella anthropi E3_33 E1] gi|260629778|gb|EEX47972.1| putative DNA polymerase III, delta prime subunit [Jonquetella anthropi E3_33 E1] Length = 265 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +T+DE R+ L L +R++ + D + AAN+LLK EEPP + +S Sbjct: 82 AMTIDECRQGALALGLAPVAAPYRLLTVWRADELLPPAANSLLKITEEPPPRGRLCFVS- 140 Query: 169 ASPTILSTIRSRC--LSIKFNSLSE 191 ++P + T+ SR LS++ +SE Sbjct: 141 STPNLSDTLHSRAWMLSLQGQDVSE 165 >gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] Length = 328 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 46/232 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+F+ V + E+++ L ++ +G M H LLF G G GK T+ A Sbjct: 15 RSFEEVVD-----LEEVKARLKEFVKAGNMPH-LLFYGPPGTGKTTMALVLA-------- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 L+ + +L R + + E R++ F + Sbjct: 61 -----------------------RELYGDAWRENTLELNASDERGINVIRE--RVKEF-A 94 Query: 124 LTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TA G ++++++D D M +A AL + +E FIL+++ I+ I SRC Sbjct: 95 RTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSRIIDPIISRC 154 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F + + + K L +Q I + D + + G + RAI +L Sbjct: 155 AVFRFPPMPKELMAKRLAYIAKQEGITVTEDGIDAIYEISQGDMRRAINLLQ 206 >gi|158299762|ref|XP_319799.4| AGAP009047-PA [Anopheles gambiae str. PEST] gi|157013673|gb|EAA14768.4| AGAP009047-PA [Anopheles gambiae str. PEST] Length = 358 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 33/223 (14%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + V+ D I++I + + ++ I++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDVGIYDRVVITDMIKQIAQTQQIDPSGQREFKTIVLSEVDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN-------------NLYKALEQLKI 203 IL +++ I+ ++SRCL I+ ++ +E+ NL+ E Sbjct: 155 YVATCRLILCVNSTSRIIPAVKSRCLGIRVSAPTEDEIVSIMNSICKKENLHIPPELATR 214 Query: 204 MGWDSKRDF---------VKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQK 254 + S+R+ K+ Y A +I D + ++I QE Q+ Sbjct: 215 IAQKSERNLRRAILTLEACKVMQYPFTANQ-EIPDMDWQTYLKETANMI---VQEQTPQR 270 Query: 255 MQQIAD---ELLSQD--QKIAFDFLIEFILKEICKSAKAAALS 292 M+ + + ELLSQ I F L++ ++K S K LS Sbjct: 271 MEVVRERLYELLSQGIPPDIIFKGLVQILVKNCDMSLKTQTLS 313 >gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri] gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri] Length = 342 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 40/201 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + E + + L Q +G M H L F G G GK T A L P+ Sbjct: 22 YRPKTVRDVASQEQVVRVLEQALETGNMPHCL-FYGPPGTGKTTCALAIAKQ-LYGPELY 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K V+ LN + +V+ +++ F SL Sbjct: 80 KQRVK---------------------------ELNASDERGISVVR----DKVKTFASLA 108 Query: 126 ANT---GY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 GY ++++++D D M +A +A+ + +E + F L+ + I+ I Sbjct: 109 VGAPAPGYPSPPYKILILDEADAMTTDAQSAMRRMMETYSKVTRFFLLCNYVTKIIDPIT 168 Query: 179 SRCLSIKFNSLSENNLYKALE 199 SRC +F L+ + L+ Sbjct: 169 SRCAKFRFQPLALETMTTRLK 189 >gi|225709786|gb|ACO10739.1| Replication factor C subunit 3 [Caligus rogercresseyi] Length = 357 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 39/60 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ VD + ++A +AL +++E+ IL ++++ ++ IRSRCLSI+ + S Sbjct: 131 FKVVILTEVDKLTKDAQHALRRTMEKYTSTCRLILCANSTSKVIPAIRSRCLSIRVPAPS 190 >gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa] gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa] Length = 354 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 39/232 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + H +I + L + R+ H LLF G G GK + +L Sbjct: 21 YRPVSLTEVVSHGEITETLMKLINENRLPH-LLFYGPPGTGKTS-------TILAAAKMM 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT-VITVDEIRRIRYFLSL 124 AP KQ++S L L+ S + G R +I + LS+ Sbjct: 73 YAP-------------KQLSSMVLE----LNASDDRGIGIVREQIINFAQTST----LSM 111 Query: 125 TAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 N ++I++D D M ++A +AL + +E+ V F +I + I+ I+SRC Sbjct: 112 DKNQKSMPKLIVLDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTR 171 Query: 184 IKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++F L + L E L I D + + +A G + R I IL Sbjct: 172 LRFAPLPNEQILPRLHYIVQAESLTITK-DGQNALLNLAE-GDMRRIINILQ 221 >gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor] gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor] Length = 333 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 92 LDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACN 151 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 152 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 181 >gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays] gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays] Length = 331 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 90 LDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 149 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 150 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 179 >gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138] gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata] Length = 322 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 38/196 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G+E+ + L Q G M H ++ G GIGK T H + +S Sbjct: 16 YRPHLLKDIVGNEETVERLQQIAADGNMPH-MIISGLPGIGKTT-SIHCLAHEMLGESYS 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 +A + + D +D +R +I++F Sbjct: 74 QAVLELNASDDRG---------------------------------IDVVRNQIKHFAQK 100 Query: 125 TAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++I++D D M A AL +++E F + S I+ ++SRC Sbjct: 101 KCHLPPGKHKIIILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCA 160 Query: 183 SIKFNSLSENNLYKAL 198 ++++ LS+ + K L Sbjct: 161 ILRYSKLSDEQVLKRL 176 >gi|145614662|ref|XP_361944.2| conserved hypothetical protein [Magnaporthe oryzae 70-15] gi|145021569|gb|EDK05698.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] Length = 384 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 202 Query: 191 ENNLYKALEQL 201 + N LE + Sbjct: 203 QENARSRLEDI 213 >gi|312215534|emb|CBX95486.1| hypothetical protein [Leptosphaeria maculans] Length = 434 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + ++ + LS+ S + H +LF G G GK + A L PD Sbjct: 39 YRPKTLSEVTAQDNTIQILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQ-LYGPDLL 96 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K+ V N + + DF SL P +V+ D+ R Sbjct: 97 KSRVLELNASDERGI--SIVRQKVKDFARQQLSLAPSY----SVMVEDKAAAGRGE-DEA 149 Query: 126 ANTGY--------------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 A TG +++I++D D M ++A +AL +++E + F L+ + Sbjct: 150 AGTGEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYVT 209 Query: 172 TILSTIRSRCLSIKFNSLSENNLYK 196 I+ + SRC +F SL + N + Sbjct: 210 RIIDPLASRCSKFRFKSLDQGNAVR 234 >gi|72016481|ref|XP_779912.1| PREDICTED: similar to replication factor C, 38-kDa subunit isoform 1 [Strongylocentrotus purpuratus] gi|115963444|ref|XP_001195473.1| PREDICTED: similar to replication factor C, 38-kDa subunit [Strongylocentrotus purpuratus] Length = 356 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + ++ D I+ F + T+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGIYDRIVIQDLIKNTAQFQQMETSAQRDFKVVVLTEVDRLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 IL +++ ++ IRSRCL ++ + S + + L+ + Sbjct: 155 YTATCRLILCCNSTSKVIPAIRSRCLGVRVAAPSIAEITQILQNV 199 >gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa] gi|307764567|gb|EFO23801.1| replication factor C [Loa loa] Length = 308 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +VI++D D M A AL +++E+ + F LI + I+ + SRC +F S+S Sbjct: 129 KVIILDEADAMTTPAQAALRRTMEKESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISS 188 Query: 192 NNLYKALE 199 + K LE Sbjct: 189 ESQGKRLE 196 >gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans] Length = 333 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 96 IDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTMEIYCNTTRFALACN 155 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 S I+ I+SRC ++F LS+ Sbjct: 156 TSEKIIEPIQSRCAMLRFTKLSD 178 >gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 514 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 112 VDEIR-RIRYF----LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D +R RI+ F +SL A +++++D D M A A+ +++E F L Sbjct: 93 IDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQAMRRTMEIHSATTRFALA 152 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 + S I+ I+SRC ++F+ L ++++ ++++ M Sbjct: 153 CNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADM 190 >gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus] gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus] Length = 355 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F L+ + I+ I SRC +F L Sbjct: 135 FKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLR 194 Query: 191 ENNLYKAL----EQLKIMGWDSK-RDFVKIAAYGSVARAIKILH 229 + + + L +Q + D +D V I+ G + RAI L Sbjct: 195 QEKIIERLRFICDQETVEVEDQAYQDIVDISG-GDLRRAITTLQ 237 >gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC BAA-381] gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381] Length = 392 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + V++IR+I L++ N+ Y +I ID + +++N LL LE QK + I + Sbjct: 70 LKVEDIRKI---LNMHENSLYKPLIFIDEIHRLSKNQQEILLIPLEN--QKAVIIGATTE 124 Query: 170 SP--TILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGW--DSKRDFVKIAAYGSVARA 224 +P + S IRSRC+ +F +L+ +L + E++ K + + D + I++ G ARA Sbjct: 125 NPQFVLTSGIRSRCMFFEFKALTNADLCELFEKVQKSLNFTIDKEAKNYLISSSGGDARA 184 Query: 225 I 225 + Sbjct: 185 M 185 >gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori] gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori] Length = 351 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E + F LI + I+ I SRC +F L+ Sbjct: 136 YKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLA 195 Query: 191 ENNLYKALEQL 201 N+ K L ++ Sbjct: 196 RENVIKRLREI 206 >gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus] gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus] Length = 344 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 105 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++++ LS++ + L Sbjct: 165 TSEKIIEPIQSRCAMLRYSKLSDSQVLAKL 194 >gi|269123415|ref|YP_003305992.1| DNA polymerase III gamma/tau subunits-like protein [Streptobacillus moniliformis DSM 12112] gi|268314741|gb|ACZ01115.1| DNA polymerase III gamma/tau subunits-like protein [Streptobacillus moniliformis DSM 12112] Length = 294 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 22/126 (17%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN-SLS 190 ++ +ID ++ + NALLK +EEP V FIL++ IL T++SR + + N +L+ Sbjct: 80 KIYIIDSIETTKKEPLNALLKVIEEPSPNVFFILLTRRLE-ILETVKSRSIILNLNLTLN 138 Query: 191 ENNLYKALEQLKIMG--------WDSKRDFVKIAAYGSVARAIKILHYDCDKIISS---Y 239 + + LE + + SK+D V + Y + D+IISS Y Sbjct: 139 TKLIEENLEMFNFLENNMDYLNMYISKKDRVDLEVYKVES---------LDEIISSIKNY 189 Query: 240 IDLIHI 245 D I++ Sbjct: 190 FDEINV 195 >gi|15645845|ref|NP_208023.1| DNA polymerase III subunit delta' [Helicobacter pylori 26695] gi|2314393|gb|AAD08275.1| DNA polymerase III delta prime subunit (holB) [Helicobacter pylori 26695] Length = 218 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSQNHVLATIKSRLI 118 >gi|19073950|ref|NP_584556.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon cuniculi GB-M1] gi|19068592|emb|CAD25060.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 305 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 K + A+ + L + L R + TV E I+ F S + T +++++D D Sbjct: 49 KTTSIRAIANNLPRTSVLELNASDERGIATVRET--IKEFASTYSKT--MKLVILDEADM 104 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 M+R+A NAL + +E+ F LI++ I+S I SRC +F + + Sbjct: 105 MSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGD 154 >gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays] gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays] Length = 339 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + + H +LF G G GK T A + L P+ K+ V Sbjct: 26 QEEVIRVLNNTLQTADLPH-MLFYGPPGTGKTTTALAIA-YQLYGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY-- 130 L L+ S + RT +I+ F ++ T GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKNFAAVAVGTARKAGYPC 112 Query: 131 --WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I++D D M +A NAL ++ E + F I + I+ + SRC +F Sbjct: 113 PPYKIIILDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 172 Query: 189 LSE 191 LSE Sbjct: 173 LSE 175 >gi|118586631|ref|ZP_01544071.1| DNA-dependent DNA polymerase III, delta' subunit [Oenococcus oeni ATCC BAA-1163] gi|290890954|ref|ZP_06554018.1| hypothetical protein AWRIB429_1408 [Oenococcus oeni AWRIB429] gi|118432946|gb|EAV39672.1| DNA-dependent DNA polymerase III, delta' subunit [Oenococcus oeni ATCC BAA-1163] gi|290479353|gb|EFD88013.1| hypothetical protein AWRIB429_1408 [Oenococcus oeni AWRIB429] Length = 300 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 27/163 (16%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D+++F SG++ HA LF GE L + +LQ Sbjct: 10 DLKRFFLHLIESGKLSHAYLFLGEDPREIHNLIAAISSRILQ------------------ 51 Query: 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDP 138 D + + K + + ++VD++R +R + + + ++ +ID Sbjct: 52 -------EKTGDDVFENANLIEVKIPEGKKTLSVDQMRTVRDIFA--EKSEHPQIAVIDD 102 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 D M +AAN++LK +EEP + L + +L TI SR Sbjct: 103 ADKMTDSAANSILKFIEEPYDRQYIFLQARNRNRVLPTILSRV 145 >gi|194700788|gb|ACF84478.1| unknown [Zea mays] gi|194706416|gb|ACF87292.1| unknown [Zea mays] Length = 339 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + + H +LF G G GK T A + L P+ K+ V Sbjct: 26 QEEVIRVLNNTLQTADLPH-MLFYGPPGTGKTTTALAIA-YQLYGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY-- 130 L L+ S + RT +I+ F ++ T GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKNFAAVAVGTARKAGYPC 112 Query: 131 --WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I++D D M +A NAL ++ E + F I + I+ + SRC +F Sbjct: 113 PPYKIIILDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 172 Query: 189 LSE 191 LSE Sbjct: 173 LSE 175 >gi|91774163|ref|YP_566855.1| replication factor C large subunit [Methanococcoides burtonii DSM 6242] gi|121686603|sp|Q12TX1|RFCL_METBU RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|91713178|gb|ABE53105.1| Replication factor C large subunit [Methanococcoides burtonii DSM 6242] Length = 497 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 24/176 (13%) Query: 82 KQMASHAL-HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140 K A+HAL D + + LN RT ++ + +S T R+I++D D Sbjct: 56 KTSAAHALARDLDWETIELN--ASDQRTAGVIERVAGSASKMSSLTGTTAKRLIILDEAD 113 Query: 141 GMNRNAA-------NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 ++ NA ++K+ ++P +LI++ + ++RS C+ +KFNS+ + Sbjct: 114 NIHGNADRGGARAIGGIIKNTDQP-----IVLIANDLYGLTPSVRSLCIELKFNSVQGRS 168 Query: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 + A++++ KIM + + +A G + AIK L +++ D IHI Sbjct: 169 MIPAMKRICVEEKIMCGVGVLEKLAESAGGDLRSAIKDLQ-----AVATGRDEIHI 219 >gi|18976465|ref|NP_577822.1| replication factor C small subunit [Pyrococcus furiosus DSM 3638] gi|42559506|sp|Q8U4J3|RFCS_PYRFU RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=PfuRFC small subunit; Contains: RecName: Full=Pfu RFC intein gi|18892004|gb|AAL80217.1| replication factor C, small subunit [Pyrococcus furiosus DSM 3638] Length = 852 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L Sbjct: 636 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 695 Query: 191 ENNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 + ++ K L + + G + + ++ Y G + RAI IL Sbjct: 696 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 738 >gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana] Length = 341 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 32/179 (17%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + H +LF G G GK T A H L P+ K+ V N Sbjct: 26 QEEVVRVLTNTLQTADCPH-MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRVLELNASD 83 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----WR 132 + + DF ++ N + +GY ++ Sbjct: 84 DRGI--NVVRTKIKDFAAVAVGSNHR------------------------QSGYPCPSFK 117 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +I++D D M +A NAL +++E + F I + I+ + SRC +F LSE Sbjct: 118 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 176 >gi|289741699|gb|ADD19597.1| replication factor C subunit RFC3 [Glossina morsitans morsitans] Length = 356 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + V+ +D I+++ + N +++I++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGIYDRVVIIDLIKQVAQVHQIDPNGQREFKIIVLSEVDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 IL +++ I+ IRSRCL I+ + + + L+ + Sbjct: 155 YVATCRIILSVNSTSRIIPAIRSRCLGIRVAAPRPDEIATILQHI 199 >gi|209876285|ref|XP_002139585.1| replication factor C subunit 2 [Cryptosporidium muris RN66] gi|209555191|gb|EEA05236.1| replication factor C subunit 2, putative [Cryptosporidium muris RN66] Length = 323 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 50/275 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E++ L G M + LL G G GK T A +L P F++A + + Sbjct: 18 MVGNEEVLIRLKVLAKQGNMPN-LLLSGPPGTGKTTSIHCLAAELL-GPKFNRAVLELNA 75 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWR 132 D +D +R RI+ F + + R Sbjct: 76 SDDRG---------------------------------IDVVRDRIKSFAKEKIDLPFGR 102 Query: 133 --VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +I++D VD M A AL + +E F L + S I+ I+SRC I+++ LS Sbjct: 103 HKIIILDEVDSMTDTAQQALRRLMEVYSDSTRFALACNQSTKIIEPIQSRCAIIRYSKLS 162 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH--YDCDKIIS--SYIDL 242 + + + L + I DS + + A G + AI L Y+ +IS + + + Sbjct: 163 DEQIRERLFDIIKFENIPYIDSGIETLIFTADGDMRIAINNLQATYNGFTLISKDNVLKI 222 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 IP E K++ I D + D ++A + E Sbjct: 223 SDIPSPE----KIKSILDACVKSDWRLAHNIAEEL 253 >gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1] Length = 331 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 43/83 (51%) Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R L + T ++++++D D M+ A AL + +E+ + F LI + I ++ Sbjct: 86 RMVLEVRLVTSGFKLVILDEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQ 145 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC +F LSE+ L ++++ Sbjct: 146 SRCTRFRFAPLSEDELKSQVQRV 168 >gi|261402851|ref|YP_003247075.1| Replication factor C [Methanocaldococcus vulcanius M7] gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7] Length = 544 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + +A NAL +++E+ FIL + I+ I+SRC +F+ L Sbjct: 329 FKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQSRCAIFRFSPLK 388 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 + ++ K L+++ + +S D + + G + +AI +L Sbjct: 389 KEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQ 431 >gi|207092696|ref|ZP_03240483.1| DNA polymerase III subunit delta' [Helicobacter pylori HPKX_438_AG0C1] Length = 166 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|71004802|ref|XP_757067.1| hypothetical protein UM00920.1 [Ustilago maydis 521] gi|46096871|gb|EAK82104.1| hypothetical protein UM00920.1 [Ustilago maydis 521] Length = 353 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L H+D+ K LS H L++ G G GK T R A + Q Sbjct: 7 YRPKALSELHYHQDLSKRLSSLADHEDFPHMLMY-GPSGAGKKT---RIACLLRQLYGPG 62 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSL 124 +++ +P +++ + + ++ L P G + ++ D ++ I ++ Sbjct: 63 TYKLKIDQRVFVTPSNRKIDVNIVSSNYHIE--LTPSDAGNYDRLVIQDILKEIAQTQNV 120 Query: 125 TANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 N + ++V++I+ D ++R+A +AL +++E+ + +L + ++ I+ IRSRCL Sbjct: 121 DLNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLL 180 Query: 184 IKFNSLSENNLYKALEQL 201 ++ + ++ + L + Sbjct: 181 LRVGAPTDEEIKTVLNHV 198 >gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum] Length = 372 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F L Sbjct: 143 YKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLD 202 Query: 191 ENNLYKALEQLKIM 204 E N LE++ M Sbjct: 203 EENAKLRLEEIAKM 216 >gi|223985442|ref|ZP_03635502.1| hypothetical protein HOLDEFILI_02808 [Holdemania filiformis DSM 12042] gi|223962585|gb|EEF67037.1| hypothetical protein HOLDEFILI_02808 [Holdemania filiformis DSM 12042] Length = 331 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPP-QKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V +++ + A N+LLK LEEP L ILI IL TI SRC ++ F L+ Sbjct: 113 KVYILNNAENTTPEALNSLLKFLEEPQGSDTLAILIVENQDRILPTIVSRCQTLTFRPLT 172 Query: 191 ENNLYK-ALEQ 200 + +++ ALE+ Sbjct: 173 QRQIHQIALEE 183 >gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis] gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis] Length = 331 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A +L +++E F L + Sbjct: 93 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSLRRTMEIYSNTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKA------LEQLK 202 S I+ I+SRC ++F+ LS+ + LEQLK Sbjct: 153 TSEKIIEPIQSRCAMLRFSKLSDAQVLAKLIEVCQLEQLK 192 >gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM 70294] gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM 70294] Length = 350 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 131 YKIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALD 190 Query: 191 ENNLYKALEQLKIMGWDSKRDF--------VKIAAYGSVARAIKILH 229 E N AL++LK + + ++ ++I++ G + RAI +L Sbjct: 191 ETN---ALDRLKFVAQEENVNYKENVLEKILEISS-GDLRRAITLLQ 233 >gi|145504098|ref|XP_001438021.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405182|emb|CAK70624.1| unnamed protein product [Paramecium tetraurelia] Length = 356 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 46/77 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + T ++V++I+ VD + + A +L +++E+ ++ ILI + I++ IRSRCL I Sbjct: 127 SKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCLLI 186 Query: 185 KFNSLSENNLYKALEQL 201 + + + + + L+++ Sbjct: 187 RVPAPDQTQVAQILDKI 203 >gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4] gi|74851260|sp|Q54E21|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName: Full=Activator 1 subunit 2 gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4] Length = 338 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 111 TVDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T+D +R +I+ F +T G ++I++D VD M A AL + +E F Sbjct: 96 TLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFAC 155 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + S I+ I+SRC ++F LS++ + L ++ Sbjct: 156 NQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREV 189 >gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa [Ciona intestinalis] Length = 336 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 94 IDVVRNKIKMFAQKKVTLPKGKHKIIILDEADSMTSGAQQALRRTMEIYSKTTRFALACN 153 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC ++++ LS+ + L ++ Sbjct: 154 QSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEV 186 >gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 360 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F L+A++ ++++++D D M A AL +++E + F L+ + Sbjct: 118 KVKTFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAAQAALRRTMELYTKTTRFCLVCN 177 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KI-MGWDSKRDFVKIAAYGSVAR 223 I+ I SRC +F L EN +++ L ++ K+ + D+ VK G + R Sbjct: 178 YVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKVNINDDTLMTLVKCTG-GDLRR 236 Query: 224 AIKILHYDCDKI 235 AI L C +I Sbjct: 237 AITSLQ-SCARI 247 >gi|317009912|gb|ADU80492.1| DNA polymerase III subunit delta' [Helicobacter pylori India7] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|188528018|ref|YP_001910705.1| DNA polymerase III subunit delta' [Helicobacter pylori Shi470] gi|188144258|gb|ACD48675.1| DNA polymerase III subunit delta' [Helicobacter pylori Shi470] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|149641294|ref|XP_001513440.1| PREDICTED: similar to replication factor C, 37-kDa subunit, partial [Ornithorhynchus anatinus] Length = 259 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 39 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 98 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++ L + S+++ VKI++ G +A +++ D K I+ Sbjct: 99 DKIQHQRLLDI------SEKEKVKISSEG-IAYLVQVSEGDLRKAIT 138 >gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group] gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group] gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa Japonica Group] gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group] gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group] gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group] gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group] Length = 339 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 41/183 (22%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ + L+ + + H +LF G G GK T A + L P+ K+ V Sbjct: 26 QEEVVRVLTTTLQTADLPH-MLFYGPPGTGKTTTALAIA-YQLYGPELYKSRV------- 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GY-- 130 L L+ S + RT +I+ F ++ + GY Sbjct: 77 ----------------LELNASDDRGINVVRT--------KIKDFAAVAVGSARKGGYPC 112 Query: 131 --WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 +++I++D D M +A NAL +++E + F I + I+ + SRC +F Sbjct: 113 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 172 Query: 189 LSE 191 LSE Sbjct: 173 LSE 175 >gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 389 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 30/230 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ S R+ H LL+ G G GK + A + + + Sbjct: 49 YRPVSLADVSGHQDILATINKFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGSENMR 107 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + + D ++ + +T + +I + S T Sbjct: 108 QMVLELNASD--------------------DRGIDVVREQIKTFASTKQIFTMGASASRT 147 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G+ ++I++D D M A AL + +E+ F +I++ S + + SRC + Sbjct: 148 GIAGF-KLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR 206 Query: 186 FNSLSENNLY----KALEQ--LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F+ L E ++ K +E+ +KI+ ++ V++ + G + RA+ +L Sbjct: 207 FSPLKEQDIRVLVDKVIEEETVKIIP-EATEALVRL-SKGDMRRALNVLQ 254 >gi|301608991|ref|XP_002934079.1| PREDICTED: replication factor C subunit 3-like [Xenopus (Silurana) tropicalis] Length = 356 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T+ ++V+++ VD + ++A +AL +++E+ IL +++ +++ IRSRCL++ Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S + + L Sbjct: 183 RICAPSVDEICTVL 196 >gi|108563598|ref|YP_627914.1| DNA polymerase III subunit delta' [Helicobacter pylori HPAG1] gi|107837371|gb|ABF85240.1| DNA polymerase III delta prime subunit [Helicobacter pylori HPAG1] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|317182480|dbj|BAJ60264.1| DNA polymerase III subunit delta' [Helicobacter pylori F57] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|312381002|gb|EFR26856.1| hypothetical protein AND_06782 [Anopheles darlingi] Length = 378 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLE 155 +NP G + V+ D I++I + TG ++ I++ VD + ++A +AL +++E Sbjct: 95 VNPSDVGIYDRVVITDMIKQIAQTQQIDP-TGQRDFKTIVLSEVDELTKDAQHALRRTME 153 Query: 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 + +L +++ I+ ++SRCL I+ +S +E + Sbjct: 154 KYVATCRLVLCVNSTSRIIPAVKSRCLGIRVSSPTEEEI 192 >gi|297380410|gb|ADI35297.1| DNA polymerase III subunit delta' [Helicobacter pylori v225d] gi|308064010|gb|ADO05897.1| DNA polymerase III subunit delta' [Helicobacter pylori Sat464] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|217034066|ref|ZP_03439487.1| hypothetical protein HP9810_893g13 [Helicobacter pylori 98-10] gi|216943461|gb|EEC22915.1| hypothetical protein HP9810_893g13 [Helicobacter pylori 98-10] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|317013014|gb|ADU83622.1| DNA polymerase III subunit delta' [Helicobacter pylori Lithuania75] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica] gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica] Length = 326 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F T G ++I++D D M A AL +++E + F L + Sbjct: 86 IDVVRNKIKMFAQKKCTLPAGKHKIIILDEADSMTSGAQQALRRTMEIYSKTTRFALACN 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 S I+ I+SRC ++F+ LS+ Sbjct: 146 NSEKIIEPIQSRCAVLRFSKLSD 168 >gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM 5219] gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM 5219] Length = 318 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 112 VDEIR-RIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +D +R +I+ F + G +++I +D D + +A +AL +++E FIL + Sbjct: 81 IDVVRTKIKNFAKTSPIGGADFKIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNY 140 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRD---FVKIAAYGSVARAI 225 S I+ I+SRC +F LS++ + K + + G D D +K A G + +AI Sbjct: 141 SSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAI 200 Query: 226 KILH 229 + Sbjct: 201 NAVQ 204 >gi|207108217|ref|ZP_03242379.1| DNA polymerase III subunit delta' [Helicobacter pylori HPKX_438_CA4C1] Length = 218 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|154175430|ref|YP_001408013.1| DNA polymerase III subunit delta' [Campylobacter curvus 525.92] gi|112803319|gb|EAU00663.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 206 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 28/37 (75%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK +EEPP+ V F++ +++ +L+TIRSR + Sbjct: 68 AQNALLKIIEEPPRNVQFLITANSKNLLLATIRSRLV 104 >gi|308183336|ref|YP_003927463.1| DNA polymerase III subunit delta' [Helicobacter pylori PeCan4] gi|308065521|gb|ADO07413.1| DNA polymerase III subunit delta' [Helicobacter pylori PeCan4] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|282852751|ref|ZP_06262093.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|282556493|gb|EFB62113.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] Length = 192 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G R +I+ + + A+NALL LEEP V+ ILI++ IL T++SR + F+ Sbjct: 12 GKRRFFIIENAEKLTLAASNALLNLLEEPVAPVVTILITNNENQILPTVKSRTQILNFS 70 >gi|217032243|ref|ZP_03437741.1| hypothetical protein HPB128_2g45 [Helicobacter pylori B128] gi|298735750|ref|YP_003728275.1| DNA polymerase III subunit delta' [Helicobacter pylori B8] gi|216946114|gb|EEC24725.1| hypothetical protein HPB128_2g45 [Helicobacter pylori B128] gi|298354939|emb|CBI65811.1| DNA polymerase III subunit delta' [Helicobacter pylori B8] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|317178474|dbj|BAJ56262.1| DNA polymerase III subunit delta' [Helicobacter pylori F30] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|331236101|ref|XP_003330710.1| hypothetical protein PGTG_12247 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309700|gb|EFP86291.1| hypothetical protein PGTG_12247 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 360 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 11/168 (6%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQ--NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 LF G G GK T R A + + P K +R+ +P +++ + +L Sbjct: 39 LFYGPSGAGKKT---RIAATLTELFGPGAQK--LRIDQKVFVTPSRRRLDVQVVQSNYHL 93 Query: 96 SYSLNPK-TGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVDGMNRNAANALLKS 153 L P G+W + D ++ + L + T ++V++I D + +A AL ++ Sbjct: 94 E--LTPSDVGQWDRSVVQDVLKEVGQSAQLDSGATQRFKVVVIHGADELTNDAQAALRRT 151 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +E + IL + ++ I+ IRSRCL ++ + + + + L + Sbjct: 152 MERHTSTMRLILCATSTAKIIGPIRSRCLLLRVGAPNPEQIAQVLNNV 199 >gi|317014618|gb|ADU82054.1| DNA polymerase III subunit delta' [Helicobacter pylori Gambia94/24] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|308184977|ref|YP_003929110.1| DNA polymerase III subunit delta' [Helicobacter pylori SJM180] gi|308060897|gb|ADO02793.1| DNA polymerase III subunit delta' [Helicobacter pylori SJM180] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|261839951|gb|ACX99716.1| DNA polymerase III subunit delta' [Helicobacter pylori 52] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|208435125|ref|YP_002266791.1| DNApolymerase III delta prime subunit [Helicobacter pylori G27] gi|208433054|gb|ACI27925.1| DNApolymerase III delta prime subunit [Helicobacter pylori G27] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|162446998|ref|YP_001620130.1| DNA polymerase III subunit delta' [Acholeplasma laidlawii PG-8A] gi|161985105|gb|ABX80754.1| DNA polymerase III, delta prime subunit [Acholeplasma laidlawii PG-8A] Length = 316 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 32/223 (14%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP--QKVLFILIS 167 I D+I ++ S T+ R+ +I+ + M+ AAN+LLK LEEP + F+L+ Sbjct: 74 IKKDQIMSLQQEFSKTSLVSGPRIFIIEQAETMSTQAANSLLKFLEEPKDDDTIGFLLVD 133 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 + +L TI SR I+ +++ + L + +I D K + + A+ I Sbjct: 134 DIN-LMLPTILSRAQIIRLTDTFDDSFIQVLMEQEI---DIKNAHFIASLTKELNEALAI 189 Query: 228 L----HYDCDKIISSYIDLIHIPR-----------------QEY---ALQKMQQIADEL- 262 + D + I ++I+ ++ PR +EY L M QI ++ Sbjct: 190 FADQKYMDTVEFIDTFINWLNNPRTPLTPLFMTISQALYQDKEYIIFILDTMCQIFLDIL 249 Query: 263 -LSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 L +QK+ ++F++E +L+ + + A L DQI + Sbjct: 250 HLHMNQKVTYEFMMESLLEYVKRIKSDTAQRVILRLQDQIKNL 292 >gi|210135390|ref|YP_002301829.1| DNA polymerase III subunit delta' [Helicobacter pylori P12] gi|210133358|gb|ACJ08349.1| DNA polymerase III delta prime subunit [Helicobacter pylori P12] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|317180956|dbj|BAJ58742.1| DNA polymerase III subunit delta' [Helicobacter pylori F32] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|315587121|gb|ADU41502.1| DNA-directed DNA polymerase III subunit delta' [Helicobacter pylori 35A] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|261838554|gb|ACX98320.1| delta prime subunit of the DNA polymerase III holoenzyme [Helicobacter pylori 51] Length = 218 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis] Length = 325 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 87 IDVVRNKIKMFAQQKVTLPPGRHKIIVLDEADSMTEAAQQALRRTMEIYSDTTRFCLACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 AS ++ I+SRC ++++ LS+ Sbjct: 147 ASEKVIEPIQSRCAMLRYSKLSD 169 >gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM 11486] gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM 11486] Length = 325 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 50/234 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R D V NQ +I L ++ M H +LF G G GK T+ H L Sbjct: 15 RTLDEVVNQ-----SEIVARLKKFVSDKNMPH-MLFAGPPGTGKTTMA-----HCL---- 59 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY--SLNPKTGKWRTVI--TVDEIRRIR 119 +H L+ Y Y LN + VI V E R R Sbjct: 60 ----------------------AHDLYGDNYRQYILELNASDERGIEVIRSKVKEFARTR 97 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ +++I++D D M +A AL + +E FILI++ I+ I+S Sbjct: 98 VVGNVP-----FKIILLDEADNMTADAQQALRRLMELYTASTRFILIANYPSKIIEPIQS 152 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 R +F L ++ + L+ + K+ + + + + G + RAI IL Sbjct: 153 RTAVFRFTPLKREDVVERLKYICSNEKVKCHEDALNTIFELSEGDMRRAINILQ 206 >gi|320162792|gb|EFW39691.1| replication factor C subunit [Capsaspora owczarzaki ATCC 30864] Length = 356 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTG-YWRVIMIDPVDGMNRNAANALLKSLEE 156 LNP G ++ D ++ I L T ++V+++ VD ++++A +AL +++E Sbjct: 105 LNPSDAGTQDRLVVQDILKEIASSHQLDTQTQRSFKVVVLTEVDKLSKDAQHALRRTMEL 164 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKF 186 IL+ +++ +LS IRSRCL I+ Sbjct: 165 YVSTCRLILLCNSTSKVLSPIRSRCLGIRI 194 >gi|308062510|gb|ADO04398.1| DNA polymerase III subunit delta' [Helicobacter pylori Cuz20] Length = 218 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces pombe 972h-] gi|13431787|sp|O14003|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication factor C3 gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe] gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe] gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe] gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces pombe] Length = 342 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 33/196 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + H+DI L ++ S R+ H +LF G G GK + A + P++ Sbjct: 29 YRPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTSTILACARKIY-GPNYR 86 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + L+ S + R ++I+ + Sbjct: 87 ------------------------NQLMELNASDDRGIDAVR-----EQIKNFASTRQIF 117 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 A+T +++I++D D M A NAL + +E+ + V F +I + I I+SRC + Sbjct: 118 AST--FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFR 175 Query: 186 FNSLSENNLYKALEQL 201 F L + K ++ + Sbjct: 176 FQPLPPKEIEKTVDHV 191 >gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001] Length = 383 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 142 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 201 Query: 191 ENNLYKAL 198 + N K L Sbjct: 202 QGNAKKRL 209 >gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri] gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri] Length = 354 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 98 IDVVRNKIKMFAQKKVTLPPGRTKIVILDEADAMTTAAQQALRRTMEIFSATTRFCLACN 157 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S ++ I+SRC ++F L++ + K L Sbjct: 158 TSDKVIEPIQSRCAIVRFVKLTDEQVLKRL 187 >gi|156553425|ref|XP_001599543.1| PREDICTED: similar to ENSANGP00000009970 [Nasonia vitripennis] Length = 284 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +GY ++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F Sbjct: 109 SGY-KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFG 167 Query: 188 SLSENNLYKALEQL-----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 L+ + LE + + D K+ + ++ G + + I +L Sbjct: 168 PLAPEQILPRLEHVITEENVTVTEDGKKALMTLSG-GDMRKVINVLQ 213 >gi|15612217|ref|NP_223870.1| DNA polymerase III subunit delta' [Helicobacter pylori J99] gi|4155746|gb|AAD06725.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99] Length = 218 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p [Cryptococcus gattii WM276] gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative; Rfc3p [Cryptococcus gattii WM276] Length = 347 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 38/199 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + G+ D + L G + H ++ G GIGK T + H L Sbjct: 32 YRPVLLDDIVGNSDTVERLKVIAEDGNLPH-IIISGMPGIGKTT-----SIHCL------ 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +HAL Y L R + D +R +I+ F Sbjct: 80 --------------------AHALLGEAYKEGVLELNASDERGI---DVVRNKIKSFAQR 116 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G ++I++D D M A AL +++E F L + S I+ I+SRC Sbjct: 117 KVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCA 176 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L++ + K L+++ Sbjct: 177 ILRYSKLNDAEVLKRLKEI 195 >gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40] gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae] Length = 352 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L++ + K L+Q+ Sbjct: 165 QSNKIIEPIQSRCAILRYARLTDGQVVKRLKQV 197 >gi|328866222|gb|EGG14607.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 325 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 117 RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +I+ F + +T G ++I++D D M A AL + +E F L + S I+ Sbjct: 89 KIKKFAAKKVTLPPGRHKIIILDEADSMTAGAQQALRRIMEINSATTRFALACNQSTKII 148 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 I+SRC +++ LS+ + K L+++ Sbjct: 149 EPIQSRCAVLRYTRLSDEQILKRLKEV 175 >gi|317177973|dbj|BAJ55762.1| DNA polymerase III subunit delta' [Helicobacter pylori F16] Length = 218 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|226469850|emb|CAX70206.1| Replication factor C 38kD subunit [Schistosoma japonicum] Length = 357 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ D + R+A +AL +++E+ IL + ++ I+S RSRCL I+ ++ S Sbjct: 129 FKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPS 188 Query: 191 ENNLYKAL-------------EQLKIMGWDSKRDFVKIAAYGSVAR 223 + + + L E K + S+R+ + Y VAR Sbjct: 189 TDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVAR 234 >gi|254779775|ref|YP_003057881.1| DNA polymerase III subunit delta' [Helicobacter pylori B38] gi|254001687|emb|CAX29916.1| DNA polymerase III delta' subunit [Helicobacter pylori B38] Length = 218 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP V FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLI 118 >gi|229819047|ref|YP_002880573.1| DNA polymerase III, subunits gamma and tau [Beutenbergia cavernae DSM 12333] gi|229564960|gb|ACQ78811.1| DNA polymerase III, subunits gamma and tau [Beutenbergia cavernae DSM 12333] Length = 841 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 19/171 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL---QNPDFSKAPVR 70 + G E + L S R HA LF G +G GK T R L Q P + P Sbjct: 17 VIGQEHVTGPLMAALRSDRATHAYLFSGPRGCGK-TTSARILARCLNCAQGP--TDTPCG 73 Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 C D C + +L + S N VD+ R +R Sbjct: 74 TC--DSCVELARG-GPGSLDVVEIDAASHN----------GVDDARDLRERAVFAPARDR 120 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D + NALLK +EEPP V F+ + ++ TIRSR Sbjct: 121 YKIFILDEAHMVTAQGFNALLKLVEEPPPHVKFVFATTEPDRVIGTIRSRT 171 >gi|194218937|ref|XP_001504577.2| PREDICTED: similar to Replication factor C subunit 2 (Replication factor C 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) (Activator 1 40 kDa subunit) (A1 40 kDa subunit) [Equus caballus] Length = 368 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 127 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 186 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L++ L +E+ + D + + A G + +A Sbjct: 187 ASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKENVPYTDDGLEAIVFTAQGDMRQA 246 Query: 225 IKILH 229 + L Sbjct: 247 LNNLQ 251 >gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa] Length = 342 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 43/186 (23%) Query: 16 GHED-IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 H+D + + L+ + H +LF G G GK T A H L P+ K+ V Sbjct: 24 AHQDEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-HQLYGPELYKSRV----- 76 Query: 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY---- 130 L L+ S + RT +I+ F ++ +G Sbjct: 77 ------------------LELNASDDRGINVVRT--------KIKDFAAVAVGSGQRQGV 110 Query: 131 -----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M +A NAL +++E + F I + I+ + SRC + Sbjct: 111 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 170 Query: 186 FNSLSE 191 F L E Sbjct: 171 FKPLPE 176 >gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis] gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis] Length = 331 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A +L +++E F L + Sbjct: 93 IDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSLRRTMEIYSNTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE--QLKIMGWDSKR-DFVKIAAYGSVARA 224 S I+ I+SRC ++F LS+ L K +E QL+ + +D + + A G + +A Sbjct: 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVCQLEKLKYDEDGLEAIVFTAQGDMRQA 212 Query: 225 IKILH 229 + L Sbjct: 213 LNNLQ 217 >gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 335 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 95 LDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACN 154 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F+ LS+ + L Sbjct: 155 TSSKIIEPIQSRCAIVRFSRLSDQEILGRL 184 >gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum subterraneum] gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum subterraneum] Length = 327 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +R++++D D + A +A +++E+ FIL ++ S I+ I+SRC ++F LS Sbjct: 109 FRLLLLDESDQLTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLS 168 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 ++ + L+++ I DS D + + G + +AI IL IS ID Sbjct: 169 KDMVETMLKKIAASENIKLDDSAIDAIYEFSLGDMRKAINILQSAAS--ISKTID 221 >gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500] Length = 319 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 111 TVDEIR-RIRYF--LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T+D +R +I+ F +T G ++I++D D M A AL + +E F L Sbjct: 93 TLDVVRDKIKTFAQTKVTLPPGRHKIIILDEADSMTSGAQQALRRIMEIYSSTTRFALAC 152 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + S I+ I+SRC +++ L++ + K L ++ Sbjct: 153 NQSSKIIEPIQSRCAVLRYTRLTDAQVLKRLREV 186 >gi|219852477|ref|YP_002466909.1| replication factor C small subunit 2 [Methanosphaerula palustris E1-9c] gi|219546736|gb|ACL17186.1| Replication factor C [Methanosphaerula palustris E1-9c] Length = 332 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA---------- 55 + P + G + + LS + SG + H LL G G GK +A Sbjct: 7 YRPAVLGEILGQDSVVASLSSFAASGNVPH-LLISGPHGTGKTAAIEAFAKVLYHDHWEE 65 Query: 56 -GHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 + Q D + D + Q + +F Y+ Sbjct: 66 NTSIFQTGDLFEQGKAYLEADERYAHIYQKDLSLIANFKYI------------------- 106 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R++ S+ +++++ + + R A AL + +E+ FIL + I+ Sbjct: 107 ---VRWYASIRPLDAPFKLMVFEDAGALTREAQQALRRIMEQFSGTCRFILCAQNQSAII 163 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL--KIMG-----WDSKRDFVKIAAYGSVARAIKI 227 I SRCL + F ++ + L ++ + G D D + AA G + RAI + Sbjct: 164 PAIASRCLPLFFGPIANQVIEDRLREVLAGVAGDRPPVTDEDLDLIIQAARGDLRRAIMM 223 Query: 228 LH 229 L Sbjct: 224 LQ 225 >gi|242058891|ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor] gi|241930566|gb|EES03711.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor] Length = 1176 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 43/269 (15%) Query: 4 RAFDPVYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 R+ Y R F G + + LS R+ A LF G +G GK + + + Sbjct: 417 RSLSQKYRPRSFLEIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALS 476 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE----- 114 P +C CS F TG +I VD Sbjct: 477 CTATGETKPCGVCTE--CSDFF---------------------TGNGINLIEVDATNRKG 513 Query: 115 IRRIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 I R+R+ + +A + ++V ++D ++ +A +K L+EP +V+FI I+ Sbjct: 514 INRVRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPE 573 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIM-GWD---SKRDFVKIAAYGSVARAIKI 227 + ++ SRC F+ + + ++ L ++ + D + D + + + GS+ A + Sbjct: 574 NLPRSVVSRCQKYMFSKIKDIDIVCRLRKIAMKENLDVELAALDLIALNSDGSLRDAETM 633 Query: 228 LHYDC---DKIISSYI-DLIHIPRQEYAL 252 L C KI S + DL+ + +E L Sbjct: 634 LDQLCLLGKKITPSLVNDLVGVVSEEKLL 662 >gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta SOWgp] gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta SOWgp] Length = 398 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 31/254 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + Sbjct: 59 GHQDIIATINRFIESNRLPHLLLY-GPPGTGKTSTILALARQIY---------------- 101 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 VK + L ++ + +T + +I + + G +++I+ Sbjct: 102 ----GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLII 157 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L E ++ Sbjct: 158 LDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIR 217 Query: 196 KAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + EQ++I D+ V++ + G + RA+ +L C S + L +PR + Sbjct: 218 VLVDQVIEKEQVRIQP-DAIDSLVRL-SKGDMRRALNVLQA-C-HASSMPLPLRDVPRDQ 273 Query: 250 YALQKMQQIADELL 263 ++ + I D+ + Sbjct: 274 QPAREPETITDDTI 287 >gi|193216552|ref|YP_001999794.1| DNA polymerase III subunit delta [Mycoplasma arthritidis 158L3-1] gi|193001875|gb|ACF07090.1| DNA polymerase III subunit delta [Mycoplasma arthritidis 158L3-1] Length = 297 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++++I ++ ++ NALLK LE PP+ + + ++A +L TI+SR I Sbjct: 95 KILIIKNIENGSQKTLNALLKFLENPPKDCIIFITTNAQNKVLKTIKSRAFII 147 >gi|226469848|emb|CAX70205.1| Replication factor C 38kD subunit [Schistosoma japonicum] Length = 357 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ D + R+A +AL +++E+ IL + ++ I+S RSRCL I+ ++ S Sbjct: 129 FKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPS 188 Query: 191 ENNLYKAL-------------EQLKIMGWDSKRDFVKIAAYGSVAR 223 + + + L E K + S+R+ + Y VAR Sbjct: 189 TDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVAR 234 >gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10] gi|150849687|gb|EDN24880.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10] Length = 390 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 26/190 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH+DI ++++ + R+ H LLF G G GK + A + + + Sbjct: 52 YRPDTLEDVSGHQDILATINKFVDTNRLPH-LLFYGPPGTGKTSTILALARRIYGSKNM- 109 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRYFLSL 124 +QM L L+ S + R I T ++I S Sbjct: 110 ----------------RQM-------VLELNASDDRGIDVVREQIKTFASTKQIFASKSS 146 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + + G +++I++D D M A AL + +E+ F +I++ + + + SRC Sbjct: 147 STSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRF 206 Query: 185 KFNSLSENNL 194 +F+ L E ++ Sbjct: 207 RFSPLKEADI 216 >gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis] Length = 350 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL + +E + F L + Sbjct: 109 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACN 168 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 AS I+ I+SRC ++++ L++ + L+ + Sbjct: 169 ASDKIIEPIQSRCAVLRYSKLTDGQILARLQDV 201 >gi|242398094|ref|YP_002993518.1| Replication factor C small subunit [Thermococcus sibiricus MM 739] gi|242264487|gb|ACS89169.1| Replication factor C small subunit [Thermococcus sibiricus MM 739] Length = 766 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 24/214 (11%) Query: 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR-------MCNPDPCSPFVKQMASHALH 90 L+EG++ + KATL R A ++ + R + N D + V+++ + Sbjct: 441 LYEGKKRVRKATL--RKAIEMVNEEKLDEKGKRILEVLKKLANTDLHALLVRKIELVEYN 498 Query: 91 DFLY-LSYSLNPK--TGKWRTVI------TVDEIR-RIRYFLSLTANTGY-WRVIMIDPV 139 DF+Y +S N G+ ++ ++ IR +++ F G +++I +D Sbjct: 499 DFVYDVSVPGNEMFFAGEIPVLLHNSDERGINVIREKVKEFARTKPIGGVSFKIIFLDEA 558 Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 D + ++A AL +++E V FIL + S I+ I+SRC +F L + ++ + L+ Sbjct: 559 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDVARRLK 618 Query: 200 QL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 + + G + + ++ Y G + RAI +L Sbjct: 619 YIAENEGLELTEEGLQAILYVAEGDLRRAINVLQ 652 >gi|331222505|ref|XP_003323926.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309302916|gb|EFP79507.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 310 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F + +T G ++I++D D M A AL +++E F L + Sbjct: 93 IDVVRNKIKTFANTKVTLPAGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACN 152 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L + + K L ++ Sbjct: 153 NSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEI 185 >gi|297621243|ref|YP_003709380.1| putative DNA polymerase III, delta' subunit [Waddlia chondrophila WSU 86-1044] gi|297376544|gb|ADI38374.1| putative DNA polymerase III, delta' subunit [Waddlia chondrophila WSU 86-1044] Length = 307 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS--- 188 +V ++ + M +ANALLK+ EEP + IL + + +L T+ SRC + + Sbjct: 84 KVFILLEAERMLPTSANALLKTFEEPAPDSVIILATSSPSQLLPTVLSRCQKVTIDKGNP 143 Query: 189 --LSENNLYKAL 198 + E+ LYKAL Sbjct: 144 QIVKEDPLYKAL 155 >gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain] Length = 332 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 107 IDVVRNKIKMFAQQKVTLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 166 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +S I+ I+SRC ++++ L++ + L+ + Sbjct: 167 SSEKIIEPIQSRCAMLRYSKLTDAQILNKLQHV 199 >gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia] Length = 384 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%) Query: 107 RTVITVDEIRRIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 R + TV E +I+ F N G +++++D D + A AL + + F+ Sbjct: 80 RGIETVRE--QIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMIISDYSTSTRFV 137 Query: 165 LISHASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 L + S ++ I+SRC ++FN L E + L + + Q + D + A G Sbjct: 138 LSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGLDALTFTAEGD 197 Query: 221 VARAIKILH 229 + +AI L Sbjct: 198 MRQAINNLQ 206 >gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892] gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892] Length = 397 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 35/222 (15%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A ++ S P +G + G +++ Sbjct: 120 DRGIDVVREQIKTFASTKQIF---STAPSSG---------------------SGLGAFKL 155 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 156 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKD 215 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + + E+++I D+ VK+ + G + RA+ +L Sbjct: 216 IRRLVDTVIEKEEVQIQP-DAIDSLVKL-SKGDMRRALNVLQ 255 >gi|116071492|ref|ZP_01468760.1| DNA polymerase III subunit delta [Synechococcus sp. BL107] gi|116065115|gb|EAU70873.1| DNA polymerase III subunit delta [Synechococcus sp. BL107] Length = 318 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 LLK+LEEP L IL++ A +LSTIRSRC I+F L ++ + L +L Sbjct: 146 LLKTLEEPGHG-LLILLTAAPERLLSTIRSRCQLIRFVRLDVASVAQVLHRL 196 >gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus] gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus] Length = 359 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 65/129 (50%), Gaps = 15/129 (11%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F LI + Sbjct: 120 KVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQGALRRTMEKESKTTRFCLICN 179 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 I+ + SRC +F LS+ ++Q +++ S+++ VKI + +V+ +K+ Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDK-----IQQQRLLDV-SEKENVKITSE-AVSYLVKVS 232 Query: 229 HYDCDKIIS 237 D K I+ Sbjct: 233 DGDLRKAIT 241 >gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct] Length = 364 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ +K++ VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDI-AKKENVKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans JEC21] gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var. neoformans B-3501A] gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 347 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 103 IDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACN 162 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC ++++ L++ + K L+++ Sbjct: 163 MSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEI 195 >gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus NRRL3357] gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus NRRL3357] Length = 295 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L++ + K L+Q+ Sbjct: 165 QSNKIIEPIQSRCAILRYARLTDGQVVKRLKQV 197 >gi|241237969|ref|XP_002401228.1| replication factor C, subunit RFC3, putative [Ixodes scapularis] gi|215496129|gb|EEC05770.1| replication factor C, subunit RFC3, putative [Ixodes scapularis] Length = 353 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LTA V+++ VD + R A +AL +++E+ IL ++ ++ IRSRCL Sbjct: 120 GLTAACAPLAVVLLAEVDKLTREAQHALRRTMEKYMASCRLILCCNSCSKVIPAIRSRCL 179 Query: 183 SIKFNSLSENNLYKAL 198 ++ + S + + L Sbjct: 180 GVRVAAPSLDQVADVL 195 >gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi] gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi] Length = 331 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 41/208 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + + G+ED LS + G + ++ G G+GK T + +L + Sbjct: 22 YRPVKFEEIVGNEDTVARLSVFSTQGNSPN-IIIAGPPGVGKTTT-IQCLARILLGDSYK 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 A L + + + G +D +R +I+ F Sbjct: 80 DA--------------------------VLELNASNERG-------IDVVRNKIKMFAQQ 106 Query: 124 -LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A +L +++E F L + S I+ I+SRC Sbjct: 107 KVTLPRGRHKIVILDEADSMTEGAQQSLRRTMEIYSNTTRFALACNTSEKIIEPIQSRCA 166 Query: 183 SIKFNSLSENN-LYKALE--QLKIMGWD 207 ++F LS+ L K +E QL+ + +D Sbjct: 167 MLRFTKLSDAQVLAKLIEVCQLEKLKYD 194 >gi|156542237|ref|XP_001600907.1| PREDICTED: similar to replication factor C, 38-kDa subunit [Nasonia vitripennis] Length = 372 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 41/68 (60%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ VD + ++A +AL +++E+ IL S+++ +L IRSRCL I+ + + Sbjct: 146 FKVVLLTNVDHLTKDAQHALRRTMEKYVGTCRLILCSNSTSRVLPAIRSRCLGIRVPAPT 205 Query: 191 ENNLYKAL 198 + + L Sbjct: 206 TDEIKSIL 213 >gi|75762823|ref|ZP_00742644.1| DNA polymerase III, delta' subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489690|gb|EAO53085.1| DNA polymerase III, delta' subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 202 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG 205 N LLK LEEP IL++ S IL+TI SRC + F L +L + L++ I Sbjct: 4 NTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQEEGITA 61 >gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei] gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei] Length = 329 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 112 VDEIR-RIRYF--LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 87 IDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMELYSKTTRFALACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLS 190 S I+ I+SRC +++ LS Sbjct: 147 QSEKIIEPIQSRCALLRYTKLS 168 >gi|303325869|ref|ZP_07356312.1| putative DNA polymerase III, delta prime subunit [Desulfovibrio sp. 3_1_syn3] gi|302863785|gb|EFL86716.1| putative DNA polymerase III, delta prime subunit [Desulfovibrio sp. 3_1_syn3] Length = 312 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 142 MNRN-AANALLKSLEEPPQKVLFILISHASPTILSTIRSR--CLSIKF--NSLSENNLYK 196 +NR+ AANALLK+LEEP +F+L++ +L T+ SR CL++ + + + L Sbjct: 145 LNRDEAANALLKALEEPSPTTVFVLLAPQREQLLPTLVSRSFCLTLPWPDSRARDTALAP 204 Query: 197 ALEQLKIMGWDSKRDFVKIAAYGSV 221 E L + D + K++A G++ Sbjct: 205 WEEALAVFLRDGQGFLDKVSARGAM 229 >gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14] Length = 333 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 36/186 (19%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E + L Q SG++ H LLF G G GK + A + N DF K Sbjct: 27 QEHVVATLRQSIASGQLPH-LLFYGPPGTGKTSTIVAVARELYGN-DFRKN--------- 75 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG----YWR 132 +L L+ S + R + V E +++ F N+ ++ Sbjct: 76 -------------GRYLELNASDD------RGIKVVRE--KVKLFAQGAINSSESMPAFK 114 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M +A +AL + +E+ + F LI + I+ I SRC+ +F+ L++ Sbjct: 115 IIVLDEADSMTNDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKE 174 Query: 193 NLYKAL 198 ++ L Sbjct: 175 SMAARL 180 >gi|76154829|gb|AAX26239.2| SJCHGC08481 protein [Schistosoma japonicum] Length = 193 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ D + R+A +AL +++E+ IL + ++ I+S RSRCL I+ ++ S Sbjct: 114 FKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPS 173 Query: 191 ENNLYKALEQLKIM 204 + + +E LKI+ Sbjct: 174 TDEI---VEILKIL 184 >gi|297287127|ref|XP_002803097.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Macaca mulatta] gi|297287129|ref|XP_002803098.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Macaca mulatta] Length = 363 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ K + VKI+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDIAEKEN-VKISDEG-IAYLVKVSEGDLRKAIT 243 >gi|125986059|ref|XP_001356793.1| GA19473 [Drosophila pseudoobscura pseudoobscura] gi|195148330|ref|XP_002015127.1| GL18586 [Drosophila persimilis] gi|54645119|gb|EAL33859.1| GA19473 [Drosophila pseudoobscura pseudoobscura] gi|194107080|gb|EDW29123.1| GL18586 [Drosophila persimilis] Length = 356 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + N ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEINGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + SE + L+ Sbjct: 155 YVATCRIIMSVNSTSRIIPAIRSRCLGIRVAAPSEAEMTAILQ 197 >gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP-6] gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP-6] Length = 323 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++VI +D D + +A +AL +++E FIL + S I+ I+SRC +F LS Sbjct: 104 FKVIFLDEADALTNDAQSALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLS 163 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + K + E L++ D ++ A G + +AI L Sbjct: 164 PEAVTKRIKFIASEEGLRVS--DGGLSAIEYVAGGDMRKAINALQ 206 >gi|76801186|ref|YP_326194.1| replication factor C small subunit 2 [Natronomonas pharaonis DSM 2160] gi|76557051|emb|CAI48625.1| replication factor C small subunit II [Natronomonas pharaonis DSM 2160] Length = 332 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 27/173 (15%) Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +G +R I++D + + + AL + +E+ + F++ + +++ I SRC + Sbjct: 117 SGSFRTILLDNAEAIREDFQQALRRVMEKHYEATQFVIATRQPSKLIAPIESRCFPVPVR 176 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI--ISSYIDLIHI 245 + S LE + + A G + YD D + ++ Y D Sbjct: 177 APSHEETVSVLESI-------------VEAEG--------VEYDADGLEYVAGYGD---- 211 Query: 246 PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 A+ Q A+E + A+D L + L+E + AAA SG E+A Sbjct: 212 GDLRKAILGAQTAAEEAGEVTMQAAYDALGDIGLRERMEEILAAADSGDFEDA 264 >gi|68076857|ref|XP_680348.1| replication factor c subunit 4 [Plasmodium berghei strain ANKA] gi|56501262|emb|CAH99168.1| replication factor c subunit 4, putative [Plasmodium berghei] Length = 335 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 45/281 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Y + + G+ + L SG M + LL G G GK T A +L Sbjct: 22 YRPEYLEDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTTSILCLASEML------ 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 S A L L+ S + R D I+ +SL Sbjct: 75 -------------------GSQAKKAVLELNASDDRGINVIR-----DRIKSFAKEISLP 110 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G ++I++D VD M A +L + +E F L + S I+ ++SRC I+ Sbjct: 111 P--GRHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIR 168 Query: 186 FNSLSENNLYKALEQLKIMGW------DSKRDFVKIAAYGSVARAIKILH--YDCDKIIS 237 + L+++ + K + LKI + D + + A G + +A+ L Y ++++ Sbjct: 169 YFKLTDDQVLKRI--LKICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYAGLEVVN 226 Query: 238 --SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + +++ IP E ++ + IA+D + E Sbjct: 227 KENVLNICDIPSPERIENLLKHCISSEWRKAHDIAYDMIKE 267 >gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae] Length = 328 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 87 IDVVRNRIKTFAQTRVTLPEGRHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 S I+ I+SRC +++ L+ L Sbjct: 147 QSEKIIEPIQSRCALLRYTKLTAAEL 172 >gi|303244085|ref|ZP_07330423.1| Replication factor C [Methanothermococcus okinawensis IH1] gi|302485470|gb|EFL48396.1| Replication factor C [Methanothermococcus okinawensis IH1] Length = 883 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + +A NAL +++E+ FIL + I+ I+SRC +F+ L Sbjct: 667 FKIIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSRIIPPIQSRCAIFRFSPLK 726 Query: 191 ENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ K ++++ I +S D + + G + +AI +L Sbjct: 727 REDIIKKIKEIAENEGITIDESGIDAIIYVSEGDLRKAINVLQ 769 >gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Penicillium marneffei ATCC 18224] gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Penicillium marneffei ATCC 18224] Length = 350 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 38/199 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PVY + G+ + + L G M H ++ G GIGK T Sbjct: 34 YRPVYLDDIVGNTETIERLKIIAKDGNMPH-VIISGMPGIGKTT---------------- 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL-- 122 +C +QM A + + L + + + G +D +R RI+ F Sbjct: 77 ---SILC-------LARQMLGDAYKEAV-LELNASDERG-------IDVVRNRIKGFAQK 118 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F + S I+ ++SRC Sbjct: 119 KVTLPPGRHKLVILDEADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCA 178 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L++ + K L Q+ Sbjct: 179 ILRYSRLTDGQVVKRLSQI 197 >gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa II] gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa II] Length = 339 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D VD M +A AL + +E + F L + S I+ I+SRC I+++ Sbjct: 113 GRHKIVILDEVDSMTDSAQQALRRLMEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSK 172 Query: 189 LSENNLYKAL 198 L++ + K L Sbjct: 173 LTDAQIRKRL 182 >gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571] gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571] Length = 324 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 41/222 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++I L Y +G + H LLF G GIGK T A Sbjct: 20 VVGQKEIVARLKSYVKTGSLPH-LLFTGPAGIGKTTSAVALA------------------ 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGY-W 131 +F ++ +N + +D +R +I+ F G + Sbjct: 61 ----------------REFFGENWQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEF 104 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++ +D D + +A AL +++E FIL + S I+ I+SRC +F L Sbjct: 105 KILFLDEADALTNDAQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDR 164 Query: 192 NNLYKALEQL-KIMGWDSKRDFVKIAAY---GSVARAIKILH 229 + + L ++ K G D + Y G + +AI L Sbjct: 165 EAVTEELNRIAKTEGLSITEDAMSAIIYVAQGDMRKAINALQ 206 >gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500] Length = 347 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L HEDI +S+ + H LLF G G GK T + L +S+ + + Sbjct: 34 LIAHEDITDTVSKLIAKNSLPH-LLFYGPPGTGK-TSTIQAIARKLYGESYSRMVLELNA 91 Query: 74 PDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYW 131 D V +Q+ + A F++ +Y + Sbjct: 92 SDDRGIDVVREQIKTFASSMFMFSNYP--------------------------------Y 119 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M A AL + +E+ + F +I + IL ++SRC +F+ L Sbjct: 120 KLIILDEADSMTNPAQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPR 179 Query: 192 NNLYKALEQL 201 + + K ++++ Sbjct: 180 SAITKRMKEI 189 >gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar] gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar] Length = 353 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 112 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 171 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 AS I+ I+SRC +++ L + L + +E+ ++ + + + A G + +A Sbjct: 172 ASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQA 231 Query: 225 IKILH 229 + L Sbjct: 232 LNNLQ 236 >gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica] gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica] Length = 333 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 37/75 (49%) Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G ++I++D D M A NAL +++E F + S I+ I+SRC Sbjct: 111 VTMPPGKHKIIILDEADSMTAGAQNALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAI 170 Query: 184 IKFNSLSENNLYKAL 198 ++F LS + + L Sbjct: 171 LRFGRLSNEQVLERL 185 >gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC 30864] Length = 366 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 36/195 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P+ + + G+ED L G M + ++ G+ G GK T A H L P + Sbjct: 57 YRPILLKDVVGNEDTVARLQIIAEEGNMPN-IIIAGQPGTGKTTSILCLA-HQLLGPAYK 114 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 A + LN + V+ D I+ F Sbjct: 115 NAVLE----------------------------LNASDDRGIDVVRND----IKMFAQKK 142 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +T G +VI++D D M A AL +++E F L + S I+ I+SRC Sbjct: 143 VTLPPGRQKVIILDEADSMTEAAQQALRRTMEIYSATTRFALACNMSDKIIEPIQSRCAI 202 Query: 184 IKFNSLSENNLYKAL 198 +++ L++ + K L Sbjct: 203 LRYTRLTDEQILKRL 217 >gi|331035544|gb|AEC53101.1| clamp loader subunit [Synechococcus phage S-CRM01] Length = 310 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 112 VDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +D++R ++ F S T+ TG +V+++D D + +A AL ++EE F+L + Sbjct: 77 IDDVRNKMFSFGSTTSLTGDRKVLLLDEADNLTGDAQKALRAAMEELQNNCSFVLTCNYK 136 Query: 171 PTILSTIRSRCLSIKF 186 ++ + SRC I F Sbjct: 137 NKLIPALHSRCAVIDF 152 >gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum] Length = 327 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D VD M +A AL + +E + F L + S I+ I+SRC I+++ Sbjct: 101 GRHKIVILDEVDSMTDSAQQALRRLMEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSK 160 Query: 189 LSENNLYKAL 198 L++ + K L Sbjct: 161 LTDAQIRKRL 170 >gi|309355067|emb|CAP39425.2| CBR-RFC-2 protein [Caenorhabditis briggsae AF16] Length = 329 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 87 IDVVRNRIKTFAQTRVTLPEGRHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 S I+ I+SRC +++ L+ L Sbjct: 147 QSEKIIEPIQSRCALLRYTKLTAAEL 172 >gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502] gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis] Length = 327 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D VD M +A AL + +E + F L + S I+ I+SRC I+++ Sbjct: 101 GRHKIVILDEVDSMTDSAQQALRRLMEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSK 160 Query: 189 LSENNLYKAL 198 L++ + K L Sbjct: 161 LTDAQIRKRL 170 >gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS 112818] gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS 127.97] Length = 397 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 31/220 (14%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + + + + + + D Sbjct: 61 GHQDIIATINRFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 119 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A ++ S P +G + G +++ Sbjct: 120 DRGIDVVREQIKTFASTKQIF---STAPSSG---------------------SGLGAFKL 155 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 156 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKD 215 Query: 194 LYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + +E+ ++ D + + G + RA+ +L Sbjct: 216 IRRLVDTVIEKEEVQIQPDAVDSLVTLSKGDMRRALNVLQ 255 >gi|260943850|ref|XP_002616223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238849872|gb|EEQ39336.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 304 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 37/221 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMC 72 L G+E+ + L G M H ++ G GIGK T + L PD +++A + + Sbjct: 3 LLGNEETIERLKLIVQDGNMPH-MIISGLPGIGKTT-SIHCLAYELLGPDLYNQATLELN 60 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWR 132 D V + + F SL P G + Sbjct: 61 ASDDRGIDV---VRNKIKQFAQTKISLPP---------------------------GRHK 90 Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 +I++D D M A AL +++E F + S I+ ++SRC +++N L+++ Sbjct: 91 IIILDEADSMTPGAQQALRRTMELYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADD 150 Query: 193 N-LYKALEQLKIMGWDSKRDFVK---IAAYGSVARAIKILH 229 L + LE +K + + +K A G + +AI L Sbjct: 151 QVLSRLLEIIKAEDVKANSEGIKALIFTAEGDMRQAINNLQ 191 >gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris gallopavo] Length = 362 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 65/129 (50%), Gaps = 15/129 (11%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F LI + Sbjct: 120 KVKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 I+ + SRC +F LS+ ++Q +++ S+++ VKI + +V+ +K+ Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDK-----IQQQRLLDV-SEKENVKITSE-AVSYLVKVS 232 Query: 229 HYDCDKIIS 237 D K I+ Sbjct: 233 EGDLRKAIT 241 >gi|70984108|ref|XP_747574.1| DNA replication factor C subunit Rfc4 [Aspergillus fumigatus Af293] gi|66845201|gb|EAL85536.1| DNA replication factor C subunit Rfc4, putative [Aspergillus fumigatus Af293] gi|159122360|gb|EDP47481.1| DNA replication factor C subunit Rfc4, putative [Aspergillus fumigatus A1163] Length = 348 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 115 IRRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 I RI+ F +T G +++++D D M A AL +++E F + S Sbjct: 105 ISRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNK 164 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I+ I+SRC +++ L++ + K L+Q+ Sbjct: 165 IIEPIQSRCAILRYARLTDAQVVKRLKQI 193 >gi|167755131|ref|ZP_02427258.1| hypothetical protein CLORAM_00635 [Clostridium ramosum DSM 1402] gi|237733443|ref|ZP_04563924.1| predicted protein [Mollicutes bacterium D7] gi|167705181|gb|EDS19760.1| hypothetical protein CLORAM_00635 [Clostridium ramosum DSM 1402] gi|229383478|gb|EEO33569.1| predicted protein [Coprobacillus sp. D7] Length = 313 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++ +I+ ++ + A N LLK LEEP + + I ++ + +L TI SRC I Sbjct: 101 GKAKIYIIENIEYATKEAMNTLLKMLEEPTEGIYAIFTANNASRVLPTILSRCQVIDIKP 160 Query: 189 LSENNLYKALEQ 200 S+ + AL Q Sbjct: 161 DSKEVIIGALCQ 172 >gi|29840269|ref|NP_829375.1| DNA polymerase III subunit delta' [Chlamydophila caviae GPIC] gi|29834617|gb|AAP05253.1| DNA polymerase III, tau subunit, putative [Chlamydophila caviae GPIC] Length = 288 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 24/156 (15%) Query: 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL--QNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 G++ HA+L G + + A H+L P+ + +PD Sbjct: 22 GKVSHAILLHGNALSLLSQYAYDLAAHILIKDTPEAQYKITQRVHPD------------- 68 Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 +H+F +GK R + ++ R I+ + + G +++ +I VD M A + Sbjct: 69 IHEFF--------PSGKGR-LHPIEIPRDIKKQIGVLPYEGCYKIYIIHEVDRMTLPAIS 119 Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 LK LE+ P + +L S I +TI SR LSI Sbjct: 120 VFLKVLEDAPAHSVILLTSAKLQRIPATILSRSLSI 155 >gi|169351615|ref|ZP_02868553.1| hypothetical protein CLOSPI_02395 [Clostridium spiroforme DSM 1552] gi|169291837|gb|EDS73970.1| hypothetical protein CLOSPI_02395 [Clostridium spiroforme DSM 1552] Length = 313 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++ +I+ ++ A N LLK LEEP + + + + IL T+ SRC I+ Sbjct: 101 GKAKIYIIENIEYATLEAMNTLLKMLEEPTEGIYALFTTKNKNRILPTVLSRCQVIEIKP 160 Query: 189 LSENNLYKALEQLKI 203 S+ N+ K L L I Sbjct: 161 DSKENIIKYLIDLDI 175 >gi|118386221|ref|XP_001026231.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89307998|gb|EAS05986.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 321 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F N G ++I++D D + A AL + + F+L + Sbjct: 82 IDVVREKIKSFAQKKVNLKPGLHKIIILDEADSLTEGAQQALRMIISDFADTTRFVLSCN 141 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S ++ I+SRC ++F L++ + + LE++ Sbjct: 142 DSSKLIDAIQSRCAILRFTKLTDEQILRRLEEI 174 >gi|303281866|ref|XP_003060225.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458880|gb|EEH56177.1| predicted protein [Micromonas pusilla CCMP1545] Length = 356 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 18/190 (9%) Query: 15 FGHEDIE--KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 F H ++ + L + G H LLF G G GK TL + P K V Sbjct: 15 FAHANVSTAEHLKRLVADGDCPH-LLFYGVSGAGKKTLALAVLREIF-GPGVEKVKV--- 69 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYS----LNPKTG--KWRTVI--TVDEIRRIRYFLSL 124 + + ++Q + +S + +NP K R V+ + E+ + R + Sbjct: 70 --EGKTWKIEQGERKIEVELTTMSSNYHVEMNPSDAGNKDRYVVQEVIKEMAKSRP-IDA 126 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 N G+ + VD +++ A + L +++E+ Q +L+ ++ +L +RSRCL I Sbjct: 127 AGNQGFKGAFYLTLVDNLSKEAQHGLRRTMEKYSQACRLVLVCNSVSKVLDAVRSRCLPI 186 Query: 185 KFNSLSENNL 194 + + S + Sbjct: 187 RVAAPSTTEV 196 >gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis] Length = 293 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 38/188 (20%) Query: 10 YNQRLFG----HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 Y R G E++ + L SG + H LLF G G GK T + P+ Sbjct: 10 YRPRSIGEVAHQEEVVQTLQHALSSGNLPH-LLFYGPPGTGKTTSALAIVRQLF-GPELC 67 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 KA V L L+ S G R D+I+ Sbjct: 68 KARV-----------------------LELNASDERGIGVVR-----DKIKNFAANSVGQ 99 Query: 126 ANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 GY ++VI++D D M +A NAL +++E + F+ I + I+ + SRC Sbjct: 100 GVAGYPCPPFKVIILDEADSMTGDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRC 159 Query: 182 LSIKFNSL 189 +F L Sbjct: 160 AKFRFKPL 167 >gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda melanoleuca] gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca] Length = 363 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 143 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 202 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ + ++ VKI+ G +A +K+ D K I+ Sbjct: 203 DK-----IQQQRLLDI-ADKEHVKISNEG-IAYLVKVSEGDLRKAIT 242 >gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818] Length = 330 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 35/190 (18%) Query: 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC 72 +L H++I + ++ R+ H LLF G G GK + ++ C Sbjct: 23 QLVSHKEIIDTIQRFVDEKRLPH-LLFYGPPGTGKTS------------------TIKAC 63 Query: 73 NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANTGYW 131 KQ+ A Y S L R + V E +I+ F S T + + Sbjct: 64 --------AKQLYGKA-----YKSMVLELNASDDRGIGVVRE--QIKTFASTKTVFSAGF 108 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M +A AL + +E+ + F LI + I ++SRC +F L+ Sbjct: 109 KLIILDEADAMTNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLAT 168 Query: 192 NNLYKALEQL 201 ++ + ++++ Sbjct: 169 EHMIQQVQRV 178 >gi|190348623|gb|EDK41109.2| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC 6260] Length = 362 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 40/284 (14%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H+ I L +G H L++ G G GK T + H L P K + + Sbjct: 19 HDSITNNLRALASTGDFPHLLVY-GPSGSGKKTRIYSTL-HELYGPSVEKLKIDVKKFTT 76 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT-----VDEIRRIRYFLSLTANTGYW 131 S +++ + L +L + + R VI V ++ + ++ + Sbjct: 77 TSN--RKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFTAKASSPRHKF 134 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL--------- 182 +V++I+ D ++R+A AL +++E+ + I++ + + +I+S I+SR L Sbjct: 135 KVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISPIKSRTLLVRIPAPTT 194 Query: 183 --------------SIKFNSLSENNLYKALEQLKI-MGWDSKRDFVKIAAYGSVARAIKI 227 ++KFN E K EQL + +R + I I Sbjct: 195 AEIASVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRALLCFETISMQTETINI 254 Query: 228 -------LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLS 264 + D + IIS+ I+ R L K++ + ELLS Sbjct: 255 NNPKQAIVDLDWEVIISNLAQSIYTQRTVANLAKVRVVLYELLS 298 >gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis] Length = 320 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 36/195 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G+ED + L G M H ++ G GIGK T H L +S Sbjct: 15 YRPHLLKDIVGNEDTVQRLQTIAADGNMPH-MIISGLPGIGKTT-SIHCLAHELLGDAYS 72 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 +A + + D R + V +I++F Sbjct: 73 QAVLELNASDD------------------------------RGIEVVR--NQIKHFAQKK 100 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T G ++I++D D M A AL +++E F + S I+ ++SRC Sbjct: 101 CTLPAGKHKIIILDEADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAI 160 Query: 184 IKFNSLSENNLYKAL 198 ++++ L++ + K L Sbjct: 161 LRYSKLTDEQVLKRL 175 >gi|307637904|gb|ADN80354.1| DNA poymerase III subunit delta [Helicobacter pylori 908] gi|325996501|gb|ADZ51906.1| DNA poymerase III delta subunit [Helicobacter pylori 2018] gi|325998089|gb|ADZ50297.1| DNA poymerase III subunit delta [Helicobacter pylori 2017] Length = 218 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A NALLK LEEPP + FI+ + + +L+TI+SR + Sbjct: 82 AQNALLKILEEPPNNICFIMFAKSPNHVLATIKSRLI 118 >gi|257387303|ref|YP_003177076.1| replication factor C small subunit 2 [Halomicrobium mukohataei DSM 12286] gi|257169610|gb|ACV47369.1| Replication factor C [Halomicrobium mukohataei DSM 12286] Length = 340 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 40/79 (50%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T +G ++ I++D +GM + AL + +E+ + F++ + ++ IRSRC Sbjct: 114 SYTPMSGSYKTILLDNAEGMREDFQQALRRVMEQYYEATQFVIATRQPSQLIPPIRSRCF 173 Query: 183 SIKFNSLSENNLYKALEQL 201 I + + ALE++ Sbjct: 174 PIVMRAPTHEETVGALERV 192 >gi|61651808|ref|NP_001013344.1| replication factor C subunit 2 [Danio rerio] gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio] gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio] Length = 349 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 108 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 167 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 AS I+ I+SRC ++++ L + + L ++ Sbjct: 168 ASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEV 200 >gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1] gi|62287362|sp|Q5JHP2|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Pko RFC intein gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis KOD1] Length = 866 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + ++A AL +++E V FIL + S I+ I+SRC +F L Sbjct: 651 FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 710 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + ++ K + E L++ + + A G + RAI +L Sbjct: 711 DEDIAKRIRYIAENEGLELT--EEGLQAILYVAEGDLRRAINVLQ 753 >gi|307188807|gb|EFN73390.1| Replication factor C subunit 3 [Camponotus floridanus] Length = 354 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 36/55 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++VI++ VD + R+A +AL +++E+ IL ++++ +L IRSRC+ I+ Sbjct: 128 FKVILLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVRIR 182 >gi|269303146|gb|ACZ33246.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN] Length = 298 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 SP + S +H +Y + GK R + ++D R I+ + ++ +++ +I Sbjct: 52 SPGSEHKVSQKIHPDIYQFFP----EGKGR-LHSIDLPRGIKKQIYISPFEANYKIYIIH 106 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 D M A +A LK EEPP+ + IL + + TI SR LSI Sbjct: 107 EADRMTLAAISAFLKVFEEPPKHAVIILTTAKVQRLPKTIISRSLSI 153 >gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis] gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis] Length = 401 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E + F L + Sbjct: 130 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 189 Query: 169 ASPTILSTIRSRCLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC +++ L++ L + ++ ++ D + + A G + +A Sbjct: 190 TSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQA 249 Query: 225 IKILH 229 I L Sbjct: 250 INNLQ 254 >gi|74000443|ref|XP_544657.2| PREDICTED: similar to CG13531-PB [Canis familiaris] Length = 2458 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 W+ V VDE L + + W + I+ V ANA+L + + P + F + Sbjct: 675 WKIVDPVDEYDVSENVLKVR-ESDTWEKLSIEEV------IANAILNN-KIPEAQTFFRI 726 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 +H++ + IR L++ F+ L +NN+ +A E LK MG+D K +KI Y + Sbjct: 727 NNHSAQRLEELIRIG-LNLVFDCLKKNNIKEASELLKNMGFDVKDQLLKICFYTT 780 >gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C (activator 1) 4, 37kDa [Taeniopygia guttata] Length = 362 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 15/129 (11%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F LI + Sbjct: 120 KVKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 I+ + SRC +F LS+ +++Q +++ S+++ VKI+ +++ +K+ Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSD-----SIQQQRLLDV-SEKEHVKISNE-AISYLVKVS 232 Query: 229 HYDCDKIIS 237 D K I+ Sbjct: 233 EGDLRKAIT 241 >gi|282855442|ref|ZP_06264763.1| putative DNA polymerase III, delta prime subunit [Pyramidobacter piscolens W5455] gi|282586738|gb|EFB91985.1| putative DNA polymerase III, delta prime subunit [Pyramidobacter piscolens W5455] Length = 267 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +DE R LSL+ R+++ + M+ A N+LLK EEPP K + + Sbjct: 87 IDECRAKSADLSLSPVVAPVRLLVFYAPEKMSPGAVNSLLKITEEPPPKGHLLYMMDRG- 145 Query: 172 TILSTIRSRCLSIKFN 187 TILST+RSR + F+ Sbjct: 146 TILSTLRSRLWMLSFS 161 >gi|150864072|ref|XP_001382764.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054] gi|149385328|gb|ABN64735.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054] Length = 363 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 20/196 (10%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGK-----ATLGFRYAGHVLQNPDFSKAPVRM 71 H+ I + L SG H L++ G G GK ATL + V + K V Sbjct: 19 HDSISQNLRALARSGDFPHLLIY-GPSGAGKKTRIYATLNEIFGSQVEKLKIDVKTFVTS 77 Query: 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT-----VDEIRRIRYFLSLTA 126 N ++M + L +L + + R VI+ V ++ + T+ Sbjct: 78 SN--------RKMEFNVLSSAYHLEITPSDMGNNDRVVISDLLKDVASTEQVDFSHQNTS 129 Query: 127 NTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 T + ++V++I+ D ++R+A AL +++E+ + IL+ ++ I+ I+SR L ++ Sbjct: 130 KTKHRFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIPPIKSRTLLVR 189 Query: 186 FNSLSENNLYKALEQL 201 S S + L Q+ Sbjct: 190 IPSPSTTAISSILGQV 205 >gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group] Length = 1079 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 35/226 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQ 60 + + + P + + G + + LS ++ +F G G GK + +A + Sbjct: 356 LTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCH 415 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV-------- 112 +P+ +P PC AS H+ GK R+++ + Sbjct: 416 SPE---------HPRPCD----SCASCIAHNL-----------GKSRSLVEIGPVGNIDL 451 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D I I + L+ RV ++D + + + + + K +E P++V+FILIS + Sbjct: 452 DSIVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSVISKVIERAPRRVVFILIS-PNLD 510 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAA 217 + I SRC F L E ++ L+ + G D RD +K+ A Sbjct: 511 LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDVDRDALKLIA 556 >gi|28572854|ref|NP_789634.1| DNA polymerase [Tropheryma whipplei TW08/27] gi|28410987|emb|CAD67372.1| putative DNA polymerase [Tropheryma whipplei TW08/27] Length = 411 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + + EIR + L + V +++ + + R + N LLK LEEP V++IL + Sbjct: 123 TVPIREIRELVMKAQLEPSLADKTVFIVEDLTRVPRRSLNVLLKPLEEPHAHVVWILCAP 182 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 + + TIRSR +I N S NL Sbjct: 183 SIRGVTPTIRSRLRAIYLNEPSIENL 208 >gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28] Length = 327 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +R+I++D D M +A AL + +E V FIL+++ S I+ I+SRC +F+ L Sbjct: 104 FRLIILDEADNMTPDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLP 163 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKI 215 ++ + L + + R+ VK+ Sbjct: 164 KDAVLGRLRDI------ASREGVKV 182 >gi|299749385|ref|XP_001838721.2| DNA clamp loader [Coprinopsis cinerea okayama7#130] gi|298408416|gb|EAU83080.2| DNA clamp loader [Coprinopsis cinerea okayama7#130] Length = 314 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 43/68 (63%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D ++R+A AL +++E+ + IL ++++ +++ I+SRCL I+ + + Sbjct: 107 FKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCLLIRVAAPN 166 Query: 191 ENNLYKAL 198 E + L Sbjct: 167 EEEMATVL 174 >gi|15618192|ref|NP_224477.1| DNA polymerase III subunit delta' [Chlamydophila pneumoniae CWL029] gi|15835807|ref|NP_300331.1| DNA polymerase III subunit delta' [Chlamydophila pneumoniae J138] gi|16752766|ref|NP_445034.1| DNA polymerase III subunit delta' [Chlamydophila pneumoniae AR39] gi|4376545|gb|AAD18421.1| DNA Polymerase III Gamma and Tau [Chlamydophila pneumoniae CWL029] gi|7189405|gb|AAF38317.1| DNA polymerase III, tau subunit, putative [Chlamydophila pneumoniae AR39] gi|8978646|dbj|BAA98482.1| DNA polymerase III gamma and tau [Chlamydophila pneumoniae J138] Length = 298 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 SP + S +H +Y + GK R + ++D R I+ + ++ +++ +I Sbjct: 52 SPGSEHKVSQKIHPDIYQFFP----EGKGR-LHSIDLPRGIKKQIYISPFEANYKIYIIH 106 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 D M A +A LK EEPP+ + IL + + TI SR LSI Sbjct: 107 EADRMTLAAISAFLKVFEEPPKHAVIILTTAKVQRLPKTIISRSLSI 153 >gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces stipitatus ATCC 10500] gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces stipitatus ATCC 10500] Length = 815 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 38/199 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PVY + G+ + + L G M H ++ G GIGK T Sbjct: 34 YRPVYLDDIVGNTETIERLKIIAKDGNMPHVII-SGMPGIGKTT---------------- 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 +C +QM +A + + L + + + G +D +R RI+ F Sbjct: 77 ---SILC-------LARQMLGNAYKEAV-LELNASDERG-------IDVVRNRIKGFAQK 118 Query: 124 -LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +T G +++++D D M A AL +++E F + S I+ ++SRC Sbjct: 119 KVTLPPGRHKLVILDEADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCA 178 Query: 183 SIKFNSLSENNLYKALEQL 201 ++++ L++ + K L Q+ Sbjct: 179 ILRYSRLTDGQVVKRLSQI 197 >gi|28493661|ref|NP_787822.1| DNA polymerase III delta' subunit [Tropheryma whipplei str. Twist] gi|28476703|gb|AAO44791.1| putative DNA polymerase III delta' subunit [Tropheryma whipplei str. Twist] Length = 411 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%) Query: 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 + + EIR + L + V +++ + + R + N LLK LEEP V++IL + Sbjct: 123 TVPIREIRELVMKAQLEPSLADKTVFIVEDLTRVPRRSLNVLLKPLEEPHAHVVWILCAP 182 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 + + TIRSR +I N S NL Sbjct: 183 SIRGVTPTIRSRLRAIYLNEPSIENL 208 >gi|57526873|ref|NP_001009629.1| replication factor C subunit 3 [Rattus norvegicus] gi|56789712|gb|AAH88281.1| Replication factor C (activator 1) 3 [Rattus norvegicus] gi|149015521|gb|EDL74921.1| replication factor C (activator 1) 3 [Rattus norvegicus] Length = 356 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL+I Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAI 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICSVL 196 >gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 334 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A A+ +++E F L + Sbjct: 78 IDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQQAMRRTMEIYSATTRFALACN 137 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S ++ I+SRC ++F L++ + K L Sbjct: 138 TSEKVIEPIQSRCAIVRFGKLTDAQVLKRL 167 >gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624] gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624] Length = 352 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G ++I++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L+Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDGQVVKRLKQV 197 >gi|296109834|ref|YP_003616783.1| Replication factor C [Methanocaldococcus infernus ME] gi|295434648|gb|ADG13819.1| Replication factor C [Methanocaldococcus infernus ME] Length = 749 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + +A NAL +++E+ FIL + I+ I+SRC +F+ L Sbjct: 532 FKIIFLDESDALTADAQNALRRTMEKYSNVCRFILSCNYPSKIIPPIQSRCAIFRFSPLK 591 Query: 191 ENNLYKALEQL 201 + ++ K L+++ Sbjct: 592 KEDIAKKLKEI 602 >gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera] Length = 350 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 112 VDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F N G ++I++D D M A AL +++E F L + Sbjct: 113 IDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSE 191 +S I+ I+SRC +++ LS+ Sbjct: 173 SSDKIIEPIQSRCAMLRYGKLSD 195 >gi|30687479|ref|NP_849695.1| emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana] Length = 327 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 41/164 (25%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 +LF G G GK T A H L P+ K+ V L L+ Sbjct: 33 MLFYGPPGTGKTTTALAIA-HQLFGPELYKSRV-----------------------LELN 68 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANT-----GY----WRVIMIDPVDGMNRNAA 147 S + RT +I+ F ++ + GY +++I++D D M +A Sbjct: 69 ASDDRGINVVRT--------KIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 120 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 NAL +++E + F I + I+ + SRC +F LSE Sbjct: 121 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 164 >gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis] gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis] Length = 357 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F L+A+ ++++++D D M +A AL +++E+ + F LI + Sbjct: 115 KVKTFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICN 174 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 I+ + SRC +F LS L + L+++ ++ D D V + G + +A Sbjct: 175 YVSRIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKA 234 Query: 225 IKILH 229 I L Sbjct: 235 ITFLQ 239 >gi|33241614|ref|NP_876555.1| DNA polymerase III subunit delta' [Chlamydophila pneumoniae TW-183] gi|33236123|gb|AAP98212.1| DNA-directed DNA polymerase III chain [Chlamydophila pneumoniae TW-183] Length = 251 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMID 137 SP + S +H +Y + GK R + ++D R I+ + ++ +++ +I Sbjct: 5 SPGSEHKVSQKIHPDIYQFFP----EGKGR-LHSIDLPRGIKKQIYISPFEANYKIYIIH 59 Query: 138 PVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 D M A +A LK EEPP+ + IL + + TI SR LSI Sbjct: 60 EADRMTLAAISAFLKVFEEPPKHAVIILTTAKVQRLPKTIISRSLSI 106 >gi|262341345|ref|YP_003284200.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272682|gb|ACY40590.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 501 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 36/199 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP--D 63 + P+ L G E+I L + R+ L F G +G+GK T H+L N Sbjct: 15 YKPLKWDELIGQENISITLKKAIQENRLSQVLFFFGPKGVGKNT-----CAHILANELNS 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFL 122 FS+ N + F + +H + S YS PK GK Sbjct: 70 FSEFKDISLNTFEINGFFHN-SLKCIHRIIDTSRYS--PKRGK----------------- 109 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + +I + +++ + LK +EE +LFI + I SRC Sbjct: 110 --------YNIFIIKEIHKFSKDVFDFFLKFIEEKHPHILFIFCGTEEKIVPEFILSRCQ 161 Query: 183 SIKFNSLSENNLYKALEQL 201 +F SLS ++ L+ + Sbjct: 162 VYEFQSLSVKKIFFHLKMI 180 >gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 864 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + +A NAL +++E+ FIL + I+ I+SRC +F+ L Sbjct: 649 FKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCNYPSRIIPPIQSRCAVFRFSPLK 708 Query: 191 ENNLYKALEQL 201 + ++ K L+++ Sbjct: 709 KEDIAKKLKEI 719 >gi|51599015|ref|YP_073203.1| hypothetical protein BG0788 [Borrelia garinii PBi] gi|51573586|gb|AAU07611.1| hypothetical protein BG0788 [Borrelia garinii PBi] Length = 348 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 ITV ++++I+ ++ + +VI I+ ++ ++ N N+LLK LE PP + FIL + Sbjct: 144 ITVYDVKKIQTWI--FSEKEKPKVIYINEIENLSFNVHNSLLKILEGPPSNIYFILAARN 201 Query: 170 SPTILSTIRSRC 181 I TI SR Sbjct: 202 KNKIPKTILSRL 213 >gi|257461407|ref|ZP_05626503.1| DNA polymerase III subunit delta [Campylobacter gracilis RM3268] gi|257441130|gb|EEV16277.1| DNA polymerase III subunit delta [Campylobacter gracilis RM3268] Length = 206 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ A NALLK LEEPP+ +F LI+ +L TIRSR + Sbjct: 58 IIVISATKFGEEAQNALLKILEEPPKNTVFFLITPFINALLPTIRSRLI 106 >gi|296118022|ref|ZP_06836604.1| putative DNA polymerase III subunit gamma/tau [Corynebacterium ammoniagenes DSM 20306] gi|295968908|gb|EFG82151.1| putative DNA polymerase III subunit gamma/tau [Corynebacterium ammoniagenes DSM 20306] Length = 885 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 E+R Y+ + +R+ +ID + NALLK +EEPP+ ++FI + + Sbjct: 3 ELRERAYYAPADS---RYRIFIIDEAHMVTNQGFNALLKIVEEPPEHLIFIFATTEPDKV 59 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALE 199 + TIRSR F L+ + LE Sbjct: 60 IGTIRSRTHHYPFRLLTPPAMKGLLE 85 >gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18] Length = 395 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 21/186 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH DI ++++ S R+ H LL+ G G GK + A + Sbjct: 61 GHHDIIGTINRFIDSNRLPHLLLY-GPPGTGKTSTILALARRIYG--------------- 104 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 VK M L ++ + +T + +I + ++ G +++I+ Sbjct: 105 -----VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLII 159 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L E ++ Sbjct: 160 LDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIR 219 Query: 196 KALEQL 201 + Q+ Sbjct: 220 ALVNQV 225 >gi|170096496|ref|XP_001879468.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645836|gb|EDR10083.1| predicted protein [Laccaria bicolor S238N-H82] Length = 356 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 43/69 (62%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D ++R+A AL +++E+ + IL ++++ +++ I+SRCL ++ + S Sbjct: 129 FKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCLLMRVPAPS 188 Query: 191 ENNLYKALE 199 + LE Sbjct: 189 PEEMLNVLE 197 >gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88] gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger] Length = 352 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L++ + K L+Q+ Sbjct: 165 QSNKIIEPIQSRCAILRYARLTDAQIVKRLKQV 197 >gi|194222681|ref|XP_001498117.2| PREDICTED: similar to Replication factor C subunit 4 (Replication factor C 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) (Activator 1 37 kDa subunit) (A1 37 kDa subunit) [Equus caballus] Length = 364 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + L L I G ++ VKI+ G +A +K+ D K I+ Sbjct: 204 DKIQQQRL--LDIAG----KEHVKISNEG-IAYLVKVSEGDLRKAIT 243 >gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 80/218 (36%), Gaps = 45/218 (20%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E+ K L +G + H L+F G G GK +L + + Sbjct: 25 QEEAVKALKTTLETGDLPH-LIFHGPPGTGKTSLALALCRSLFGD--------------- 68 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGY--WRV 133 DF LN + +D +R I+ F SL G +++ Sbjct: 69 --------------DFRLRVKELNASDERG-----IDAVRSSIKEFASLAVPNGKIPFKI 109 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE-- 191 +++D D M A NAL + +E FI+I + I+ I SRC +F L Sbjct: 110 VILDEADSMTSAAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPA 169 Query: 192 --NNLYKALE--QLKIMGWDSKRDFVKIAAYGSVARAI 225 L+K E L + D+ V I+ G + +AI Sbjct: 170 IIERLHKIFEDQNLSVDSEDTYETLVNISG-GDLRKAI 206 >gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407] Length = 386 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 53/241 (21%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ S R+ H LL+ G G GK + A + Sbjct: 49 YRPVSLDDVSGHQDILATINKFVDSNRLPHLLLY-GPPGTGKTSTILALARRI------- 100 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 + + + LN + +D +R +I+ F S Sbjct: 101 ---------------------YGAENTRQMVLELNASDDRG-----IDVVREQIKTFAST 134 Query: 124 ---LTANTG------YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 A++G +++I++D D M A AL + +E+ F +I++ + + Sbjct: 135 RQIFAASSGPAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 194 Query: 175 STIRSRCLSIKFNSLSEN------NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL 228 + SRC +F+ L E N A E +KIM + D + + G + RA+ +L Sbjct: 195 PALLSRCTRFRFSPLKEADIRVLVNKVIADEDVKIMSEAA--DALVTLSRGDMRRALNVL 252 Query: 229 H 229 Sbjct: 253 Q 253 >gi|268325655|emb|CBH39243.1| conserved hypothetical protein, similar to replication factor C small subunit [uncultured archaeon] gi|268326125|emb|CBH39713.1| conserved hypothetical protein, similar to replication factor C, small subunit [uncultured archaeon] gi|268326285|emb|CBH39873.1| conserved hypothetical protein, similar to replication factor C small subunit [uncultured archaeon] Length = 345 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 22/205 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M + P + GH ++ K L+ + + + LL+ G +G GK +L + A Sbjct: 4 MWTEKYRPKRLHEILGHVEVVKRLNGFVMEKTIPNLLLW-GPKGTGKTSLVYALANEFYG 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQ----MASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + + +R+ C F++Q + + F Y + ++ I + + Sbjct: 63 DDE---NLLRI----ECRDFIEQRKKWLKADKRFKFFY---------DEQKSAINIFKAM 106 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I+ + SL+ ++++ D + L + +E+ + FI + + +++ Sbjct: 107 -IKEYASLSPLNAPFKLLFFSNADYLPVYLQQGLRRVMEQSSKTCRFIFSTTKATSVIPA 165 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL 201 IRSRCL+ +F SL+E++ + L +L Sbjct: 166 IRSRCLNFRFPSLAESDAFGTLIRL 190 >gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum] Length = 364 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M A AL +++E + F L + S I+ I+SRC ++F+ Sbjct: 143 GRHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSK 202 Query: 189 LSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 L + + L Q+ +++ +S D + A G + +A+ L Sbjct: 203 LKDEEIATRLLQVCTYEQVVYDESGIDALIFTAQGDMRQALNNLQ 247 >gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces pombe 972h-] gi|1350581|sp|Q09843|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication factor C2; AltName: Full=Activator 1 41 kDa subunit gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces pombe] Length = 340 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A AL +++E + F LI + I+ + SRC +F L Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLD 183 Query: 191 ENNLYKALE 199 N+ K LE Sbjct: 184 NENMVKRLE 192 >gi|298104116|ref|NP_001177121.1| replication factor C subunit 3 [Sus scrofa] Length = 356 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICHVL 196 >gi|126338206|ref|XP_001370165.1| PREDICTED: similar to replication factor C, 37-kDa subunit [Monodelphis domestica] Length = 366 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 145 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 204 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++ L + S+++ VKI G +A +K+ D K I+ Sbjct: 205 DKIQHQRLLDI------SEKENVKINNEG-IAYLVKVSEGDLRKAIT 244 >gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior] Length = 327 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 40/230 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE I K +++Y ++ H LL+ G G GK + A + F+ Sbjct: 16 YRPKSLDELISHETIIKTINKYIDENQLPHLLLY-GPPGTGKTSTILACARKLYTPAQFN 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 L L+ S + G R I + + + T Sbjct: 75 SM------------------------VLELNASDDRGIGIVRGQI-------LSFASTGT 103 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC + Sbjct: 104 MYKSAFKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFR 163 Query: 186 FNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L+ + L E LK+ D K+ + ++ G + + I +L Sbjct: 164 FLPLAAEQIIPRLNHVIEAENLKVTE-DGKQALITLSG-GDMRKVISVLQ 211 >gi|222615775|gb|EEE51907.1| hypothetical protein OsJ_33507 [Oryza sativa Japonica Group] Length = 905 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 31/210 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P L G + + L+ R+ A LF G +G GK + ++ + Sbjct: 90 LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAAL--- 146 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-----EIR 116 + V + PC A DF TG +I VD I Sbjct: 147 -----SCVAIGENKPCG------ACMECTDFF---------TGNGINLIEVDASNRKSIN 186 Query: 117 RIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 RIR+ + +A + ++V ++D ++ +A +K L+EP +V+FI I+ + Sbjct: 187 RIRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENL 246 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + SRC F+ + + ++ L ++ + Sbjct: 247 PRAVISRCQKYMFSKIKDIDIVCRLRKIAV 276 >gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15] gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15] Length = 393 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 28/229 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH+DI ++++ S R+ H LL+ G G GK + A + N + Sbjct: 49 YRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLY-GPPGTGKTSTVLALARRIYGNKNMR 107 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + + D V + + +S PK G Sbjct: 108 QMVLELNASDDRGIDVVREQIKTFSSTKQI-FSAAPKAGD-------------------- 146 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + +++I++D D M A AL + +E+ F +I++ + + + SRC + Sbjct: 147 SALATFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFR 206 Query: 186 FNSLSENNLY----KALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 F+ L + ++ K +E K+ + D+ V + + G + RA+ +L Sbjct: 207 FSPLKDQDIRNLVDKVIEDEKVNITQDAASSLVTL-SKGDMRRALNVLQ 254 >gi|70952026|ref|XP_745209.1| replication factor c subunit 4 [Plasmodium chabaudi chabaudi] gi|56525460|emb|CAH78469.1| replication factor c subunit 4, putative [Plasmodium chabaudi chabaudi] Length = 336 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 61/283 (21%), Positives = 109/283 (38%), Gaps = 48/283 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Y + + G+ + L SG M + LL G G GK T A +L Sbjct: 22 YRPEYLEDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTTSILCLASEML------ 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 S A L L+ S + R RI+ F Sbjct: 75 -------------------GSQAKKAVLELNASDDRGINVIRD--------RIKSFAKEV 107 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++ G ++I++D VD M A +L + +E F L + S I+ ++SRC Sbjct: 108 ISLPPGRHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAI 167 Query: 184 IKFNSLSENNLYKALEQLKIMGW------DSKRDFVKIAAYGSVARAIKILH--YDCDKI 235 I++ L+++ + K + LKI + D + + A G + +A+ L Y ++ Sbjct: 168 IRYFKLTDDQVLKRI--LKICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYAGLEV 225 Query: 236 IS--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 I+ + +++ IP E ++ + IA+D + E Sbjct: 226 INKENVLNICDIPSPERIENLLKHCISSEWRKAHDIAYDMIKE 268 >gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4] gi|74853593|sp|Q54MD4|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName: Full=Activator 1 subunit 4 gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4] Length = 347 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 36/221 (16%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 ED+ L + +G + H LLF G G GK + A + P+ K V N Sbjct: 27 QEDVISALKKSLNTGNLPH-LLFYGPPGTGKTSTILAIAMDIY-GPELMKQRVLELNASD 84 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-YWRVIM 135 ++ + +F Y++N T + T+N G +++I+ Sbjct: 85 ERGI--EVVRTKIKNFA--GYAVNKTT-------------------TGTSNPGATFKLII 121 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M +A AL +++E + F L+ + I+ + SRC +F L + Sbjct: 122 LDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPL---DTV 178 Query: 196 KALEQLKIMGW-------DSKRDFVKIAAYGSVARAIKILH 229 +E+LK + +S +++ + G + +AI L Sbjct: 179 ATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQ 219 >gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus] Length = 382 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 72/331 (21%), Positives = 128/331 (38%), Gaps = 59/331 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L HEDI L + S ++ H LLF G G GK + A + Sbjct: 69 YRPSSLEELVAHEDIVGILQKLIASNKLPH-LLFYGPPGTGKTSTILACAKKLYGA---- 123 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 DF + LN + +D +R +I+ F Sbjct: 124 -------------------------DFKMMVLELNASDDRG-----IDVVRGQIKEFAGT 153 Query: 125 TA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++G +++++D D M +A AL + +E+ + F +I + I+ ++SRC Sbjct: 154 KRLFSSGV-KLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCT 212 Query: 183 SIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL---HYDCDKI 235 +F L + L ++Q K+ + V G + R + +L H K+ Sbjct: 213 KFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQKV 272 Query: 236 ISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 + L P +E M+ I + LL+ K AFD +++ +AK +L Sbjct: 273 DERHAYLCAAAPLKE----DMEYIRNALLTASFKDAFDGILKLT------TAKGYSLGDI 322 Query: 295 LEE-ADQIAQIYFSLVKRVHAF-SMYNLDRR 323 ++E A ++ +I VH M N + R Sbjct: 323 VQELALKVMEIELPAAVMVHLLDEMSNTEER 353 >gi|223998512|ref|XP_002288929.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] gi|220976037|gb|EED94365.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] Length = 359 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TAN Y V++++ VD + R A AL +++E+ IL + ++ +RSRCL I Sbjct: 126 TANNEYKVVVLVE-VDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGI 184 Query: 185 KFNSLSENNLYKALEQL 201 + + S + + L+ + Sbjct: 185 RVAAPSHDEIATVLKTV 201 >gi|327268843|ref|XP_003219205.1| PREDICTED: replication factor C subunit 3-like [Anolis carolinensis] Length = 356 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T+ ++V+++ VD + ++A +AL +++E+ IL +++ +++ IRSRCL++ Sbjct: 123 TSTQRDFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIGDICSVL 196 >gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001] Length = 393 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 30/232 (12%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ S R+ H LL+ G G GK + A + + Sbjct: 48 YRPVSLADVSGHQDILVTINKFVDSNRLPHLLLY-GPPGTGKTSTILALARRIYGAENMR 106 Query: 66 KAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + + D V +Q+ + A ++ +L P + Sbjct: 107 QMVLELNASDDRGIDVVREQIKTFASTKQIF---TLGPSAKSGGGGGGM----------- 152 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++I++D D M A AL + +E+ F +I++ S + + SRC Sbjct: 153 -----ASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTR 207 Query: 184 IKFNSLSENNLY----KALEQ--LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L E ++ K +E+ +KIM ++ VK+ + G + RA+ +L Sbjct: 208 FRFSPLKERDIRVLVDKVIEEEHVKIMP-EATEALVKL-SKGDMRRALNVLQ 257 >gi|220905528|ref|YP_002480840.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869827|gb|ACL50162.1| DNA polymerase III, delta prime subunit, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 313 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 ++ +R ++ L + RV+++ + AANALLK+LEEP +F+L++ Sbjct: 106 MERVRELKSRLRDAPHGNGRRVVLLMGLSLTRDEAANALLKALEEPSATTVFVLLAPQRE 165 Query: 172 TILSTIRSR--CLSIKF 186 +L T+ SR CL++ + Sbjct: 166 QLLPTLVSRSFCLTLPW 182 >gi|84370117|ref|NP_001033636.1| replication factor C subunit 3 [Bos taurus] gi|108860923|sp|Q2TBV1|RFC3_BOVIN RecName: Full=Replication factor C subunit 3; AltName: Full=Activator 1 38 kDa subunit; Short=A1 38 kDa subunit; AltName: Full=Activator 1 subunit 3; AltName: Full=Replication factor C 38 kDa subunit; Short=RF-C 38 kDa subunit; Short=RFC38 gi|83638731|gb|AAI09607.1| Replication factor C (activator 1) 3, 38kDa [Bos taurus] gi|296481817|gb|DAA23932.1| replication factor C subunit 3 [Bos taurus] Length = 356 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICHVL 196 >gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980] gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980 UF-70] Length = 412 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 142 YKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLD 201 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + N ++++ + ++ VK+ G+V I+ D K I+ Sbjct: 202 KGNAVVRVKEI------ADKEGVKLEE-GAVEALIRCSEGDLRKAIT 241 >gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081] gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081] gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3] gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188] Length = 404 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 21/196 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH+DI ++++ + R+ H LL+ G G GK + A + Sbjct: 51 YRPNTLEDVSGHQDIIGTINRFIDTNRLPHLLLY-GPPGTGKTSTILALARRIYG----- 104 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 VK M L ++ + +T + +I + Sbjct: 105 ---------------VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAE 149 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++I++D D M A AL + +E+ F +I++ S + + SRC + Sbjct: 150 STLGAFKLIILDEADAMTAVAQMALRRIMEKYTANARFCIIANYSHKLSPALLSRCTRFR 209 Query: 186 FNSLSENNLYKALEQL 201 F+ L E ++ ++Q+ Sbjct: 210 FSPLKEKDIRVLVDQV 225 >gi|57109940|ref|XP_535837.1| PREDICTED: similar to Activator 1 37 kDa subunit (Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) [Canis familiaris] Length = 363 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 143 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 202 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ + ++ VK++ G +A +K+ D K I+ Sbjct: 203 DK-----IQQQRLLDI-ADKEHVKVSNEG-IAYLVKVSEGDLRKAIT 242 >gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted) [Schizosaccharomyces pombe 972h-] gi|30913230|sp|O94449|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication factor C4 gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted) [Schizosaccharomyces pombe] Length = 342 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 38/196 (19%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P+ + G+E+ L G M H L+ G GIGK T A H L P + Sbjct: 27 YRPIVLDDIVGNEETIDRLKVIAKEGNMPH-LVISGMPGIGKTTSILCLA-HALLGPAYK 84 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS- 123 + + + D +D +R RI+ F Sbjct: 85 EGVLELNASDERG---------------------------------IDVVRNRIKAFAQK 111 Query: 124 -LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++I++D D M A AL +++E F L + S I+ I+SRC Sbjct: 112 KVILPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 171 Query: 183 SIKFNSLSENNLYKAL 198 ++++ L++ + + L Sbjct: 172 ILRYSRLTDQQVLQRL 187 >gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03] Length = 391 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 21/186 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH DI ++++ S R+ H LL+ G G GK + A + Sbjct: 61 GHHDIIGTINRFIDSNRLPHLLLY-GPPGTGKTSTILALARRIYG--------------- 104 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 VK M L ++ + +T + +I + ++ G +++I+ Sbjct: 105 -----VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLII 159 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L E ++ Sbjct: 160 LDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIR 219 Query: 196 KALEQL 201 + Q+ Sbjct: 220 ALVNQV 225 >gi|297693825|ref|XP_002824203.1| PREDICTED: replication factor C subunit 3-like isoform 1 [Pongo abelii] Length = 356 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVVQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15] Length = 351 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 30/176 (17%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASH 87 SG M H LL+ G G GK TL H P F +A V N D V++ Sbjct: 33 SGNMPHMLLY-GPAGTGKTTL-IHAMMHEFFGPRFWRARVNEFNASTDRGIKIVRERIKS 90 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITV--DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 RTVI V D+++ + ++VI++D D + R Sbjct: 91 IA-----------------RTVIAVAPDDVKAVY-------PCPDFQVIILDEADALTRE 126 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + AL + +E+ + F +I + I++ I SRC F+SL ++ + LE + Sbjct: 127 SQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEAI 182 >gi|324520157|gb|ADY47571.1| Replication factor C subunit 3 [Ascaris suum] Length = 354 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA ++V+++ V+ + R+A +AL +++E+ IL + ++ +RSRC++I Sbjct: 123 TATQKQFKVVVLMEVEQLTRDAQHALRRTMEKYSATCRLILCCESIAKVIDPLRSRCMAI 182 Query: 185 KFNSLSENNLYKALEQLKIM 204 + + S+++ A+E +K++ Sbjct: 183 RVAAPSDHD---AVEVVKVV 199 >gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool] Length = 403 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 16/198 (8%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATL---------GFRYAGHVLQNPDF 64 + H+DI + + Y G++ H LLF G G GK + G HVL+ Sbjct: 50 VLAHDDIIRTIRHYVEKGQLPH-LLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLE---L 105 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + + R N +K A + F + K +E + Sbjct: 106 NASDDRGINT--VREQIKTFAETSSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEK 163 Query: 125 TANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++I++D D M A NAL + +E + V F LI + I I+SRC Sbjct: 164 RGGAGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTG 223 Query: 184 IKFNSLSENNLYKALEQL 201 +F +S +L + Q+ Sbjct: 224 FRFTPVSSLSLKQKAAQI 241 >gi|116491388|ref|YP_810932.1| DNA polymerase III, delta prime subunit [Oenococcus oeni PSU-1] gi|116092113|gb|ABJ57267.1| DNA polymerase III, delta prime subunit [Oenococcus oeni PSU-1] Length = 300 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 37/168 (22%) Query: 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 D++ F SG++ HA LF GE +P Sbjct: 10 DLKHFFLHLIESGKLSHAYLFLGE------------------------------DPREIH 39 Query: 79 PFVKQMASHALH-----DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 + ++S L D + + K + + ++VD++R +R + + + ++ Sbjct: 40 NLIAAISSRILREKTGDDVFENANLIEVKIPEGKKTLSVDQMRTVRDIFA--EKSEHPQI 97 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +ID D M +AAN++LK +EEP + L + +L TI SR Sbjct: 98 AVIDDADKMTDSAANSILKFIEEPYDRQYIFLQARNRNRVLPTILSRV 145 >gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 358 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 13/126 (10%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I+ F S T N +++I++D D M ++A AL +++E + F L+ + Sbjct: 112 KIKNFASFTVNNTTVAGKQVPSFKLIILDEADSMTQDAQAALRRTIENTSKTTRFCLLCN 171 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL-----YKALEQLKIMGWDSKRDFVKIAAYGSVAR 223 I+ + SRC +F L + Y A ++ + +S D + + G + + Sbjct: 172 YITRIIEPLSSRCAKFRFKPLKSEAMGERLKYIADQEGVNLANESTLDAIHTVSQGDMRK 231 Query: 224 AIKILH 229 AI + Sbjct: 232 AITFMQ 237 >gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 315 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 34/196 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G ++I + L + H +L G G+GK T A V Sbjct: 8 YRPQSFDEIIGQKEIVEKLKAMAEKKEIQHMIL-SGPPGVGKTTSAVVLAKAVF------ 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 PD F++ LN + +VI +++ F Sbjct: 61 -------GPDWTQNFIE----------------LNASDDRKLSVIQ----GKVKEFARTK 93 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I+ D D + + A AL + +EE F+ + I+ ++SRC ++ Sbjct: 94 PIDAPFKIILFDEADSLTQEAQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQSRCAILR 153 Query: 186 FNSLSENNLYKALEQL 201 F LS+ +++K ++++ Sbjct: 154 FQPLSKEDVHKFIKRI 169 >gi|297803640|ref|XP_002869704.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315540|gb|EFH45963.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 818 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 38/237 (16%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVL 59 + + F P L G E + K L GR+ LF G +G GK + F A + L Sbjct: 244 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 303 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--EIRR 117 S+ P +C+ C + +G+ R V+ D ++ R Sbjct: 304 SQAAHSR-PCGLCS--ECKSYF---------------------SGRGRDVMETDSGKLNR 339 Query: 118 IRYFLSLTAN------TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 Y SL N T ++V +ID + + LL SL+ Q +FIL++ Sbjct: 340 PSYLRSLIKNASLPPVTSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELE 399 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKI-MGWD---SKRDFVKIAAYGSVARA 224 + + SR F+ + + ++ L ++ + G D DF+ + GS+ A Sbjct: 400 KLPRNVLSRSQKYHFSKVCDADISTKLAKICVEEGIDFDQGAVDFIASKSDGSLRDA 456 >gi|124249204|ref|NP_081285.1| replication factor C subunit 3 [Mus musculus] gi|30913256|sp|Q8R323|RFC3_MOUSE RecName: Full=Replication factor C subunit 3; AltName: Full=Activator 1 38 kDa subunit; Short=A1 38 kDa subunit; AltName: Full=Activator 1 subunit 3; AltName: Full=Replication factor C 38 kDa subunit; Short=RF-C 38 kDa subunit; Short=RFC38 gi|20071210|gb|AAH26795.1| Rfc3 protein [Mus musculus] gi|74188877|dbj|BAE39214.1| unnamed protein product [Mus musculus] gi|74203125|dbj|BAE26250.1| unnamed protein product [Mus musculus] gi|148673950|gb|EDL05897.1| mCG17786, isoform CRA_a [Mus musculus] Length = 356 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICSVL 196 >gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8] gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8] Length = 340 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 96 IDVVRNKIKNFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIFSNTTRFCLACN 155 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L + + K L ++ Sbjct: 156 MSNKIIEPIQSRCAILRYGKLKDQEILKRLLEI 188 >gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex] Length = 356 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F L Sbjct: 139 FKIVILDEADSMTGAAQAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLP 198 Query: 191 ENNLYKALEQLKIMGWDSKRDFVK----IAAYGSVARAIKILH 229 L K LE + I S + V A+ G + RAI L Sbjct: 199 REILVKRLEHICIAENMSCSEEVLESLIEASEGDLRRAITFLQ 241 >gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 321 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M A AL +++E F+ + S I+ ++SRC +++N Sbjct: 106 GRTKIIILDEADSMTPGAQQALRRTMEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNK 165 Query: 189 LS-ENNLYKALEQLK 202 LS E L + LE +K Sbjct: 166 LSDEEVLARLLEIIK 180 >gi|126327443|ref|XP_001367742.1| PREDICTED: similar to replication factor C, 38-kDa subunit [Monodelphis domestica] Length = 356 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 40/66 (60%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T+ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLS 190 + + S Sbjct: 183 RVPAPS 188 >gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 112 VDEIR-RIRYFLSLTANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +D +R RI+ F S + G ++I++D D M A AL + +E+ V FILI + Sbjct: 84 IDTVRMRIKDFASSRSLFGPKIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNY 143 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++ +RSRC +F L + + K L + Sbjct: 144 PEKLIPALRSRCTEFRFQPLPDEDAAKFLRHI 175 >gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966] gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966] Length = 371 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M A AL +++E F + S I+ I+SRC ++F Sbjct: 112 GRHKIIVLDEADSMTPGAQQALRRTMEIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGR 171 Query: 189 LSENNLYKALEQL 201 +S+ L + L Q+ Sbjct: 172 ISDEELLRRLLQI 184 >gi|260833022|ref|XP_002611456.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae] gi|229296827|gb|EEN67466.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae] Length = 356 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 40/71 (56%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ VD + ++A +AL +++E+ IL ++ ++ IRSRCL ++ + S Sbjct: 129 FKVVLLTEVDRLTKDAQHALRRTMEKYVTTCRLILCCESTSKVIPAIRSRCLGVRVPAPS 188 Query: 191 ENNLYKALEQL 201 + L+ + Sbjct: 189 NQQICSILQTV 199 >gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa] Length = 357 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 116 RRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +RI+ F +T G +++++D D M A AL +++E F + S I Sbjct: 115 QRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKI 174 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + ++SRC ++F L++ + K L Q+ Sbjct: 175 IEPLQSRCAILRFAKLTDAQVVKRLLQI 202 >gi|330796823|ref|XP_003286464.1| replication factor C subunit [Dictyostelium purpureum] gi|325083587|gb|EGC37036.1| replication factor C subunit [Dictyostelium purpureum] Length = 498 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 111 TVDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 T+D +R +I+ F +T G ++I++D VD M A AL + +E F Sbjct: 86 TLDVVRDKIKSFAQKKVTLPPGRHKIIILDEVDSMTSGAQQALRRIMELYSSTTRFAFAC 145 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM 204 + S I+ I+SRC ++F L NNL A ++M Sbjct: 146 NQSTKIIEPIQSRCAVLRFTKL--NNLQIAARLKEVM 180 >gi|164426330|ref|XP_001728317.1| activator 1 37 kDa subunit [Neurospora crassa OR74A] gi|157071292|gb|EDO65226.1| activator 1 37 kDa subunit [Neurospora crassa OR74A] Length = 353 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 116 RRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +RI+ F +T G +++++D D M A AL +++E F + S I Sbjct: 111 QRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKI 170 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + ++SRC ++F L++ + K L Q+ Sbjct: 171 IEPLQSRCAILRFAKLTDAQVVKRLLQI 198 >gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS] Length = 398 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 52/264 (19%), Positives = 109/264 (41%), Gaps = 31/264 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH+DI ++++ S R+ H LL+ G G GK + A + Sbjct: 49 YRPSTLDDVSGHQDIIATINRFIESNRLPHLLLY-GPPGTGKTSTILALARQIY------ 101 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 VK + L ++ + +T + +I + Sbjct: 102 --------------GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAG 147 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++I++D D M A AL + +E+ F +I++ + + + SRC + Sbjct: 148 SKLGAFKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFR 207 Query: 186 FNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F+ L E ++ + EQ++I D+ V++ + G + RA+ +L C S Sbjct: 208 FSPLKEQDIRVLVDQVIEKEQVRIQP-DAIDSLVRL-SKGDMRRALNVLQA-C-HASSMP 263 Query: 240 IDLIHIPRQEYALQKMQQIADELL 263 + L +P+ + ++ + I D+ + Sbjct: 264 LPLRDVPKDQQPAREPETITDDTI 287 >gi|227486760|ref|ZP_03917076.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235230|gb|EEI85245.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC 51172] Length = 262 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 A+NA+LKSLEE L I I+ TIRSRC I N+++ N Sbjct: 98 ASNAMLKSLEELKSYSLIIFTVDNRGKIIPTIRSRCQLISLNTVNTN 144 >gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae] gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae] Length = 356 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + VD I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGIYDRTVVVDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ ++ SE + L+ Sbjct: 155 YVATCRIIISVNSTSRIIPAIRSRCLGIRVSAPSEPEIVSILQ 197 >gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130] gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130] Length = 323 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 79 IDVVRNKIKAFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACN 138 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC +++ L + + K L E K+ D + A G + +A Sbjct: 139 MSNKIIEPIQSRCAILRYAKLRDQEVLKRLLEICEMEKVQYNDDGLTALIFTAEGDMRQA 198 Query: 225 IKILH 229 I L Sbjct: 199 INNLQ 203 >gi|124806707|ref|XP_001350805.1| replication factor C subunit 4 [Plasmodium falciparum 3D7] gi|11559514|gb|AAG37992.1|AF126257_1 replication factor C subunit 4 [Plasmodium falciparum] gi|23496934|gb|AAN36485.1| replication factor C subunit 4 [Plasmodium falciparum 3D7] Length = 336 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 40/230 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G+ + L SG M + LL G G GK T A +L N Sbjct: 22 YRPEFLDEVVGNPFVINTLKSIITSGNMPN-LLLAGAPGTGKTTSILCLASEMLGN---- 76 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 A A+ LN + VI RI+ F Sbjct: 77 ------------------QAKKAV-------LELNASDDRGINVIR----DRIKSFAKEI 107 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++ G ++I++D VD M A +L + +E F L + S I+ ++SRC Sbjct: 108 ISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAI 167 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 I++ LS++ + K + ++ I D D + A G + +A+ L Sbjct: 168 IRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQ 217 >gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus clavatus NRRL 1] gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus clavatus NRRL 1] Length = 395 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 37/224 (16%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ + R+ H LL+ G G GK + A + + Sbjct: 61 GHQDILTTINKFVEANRLPHLLLY-GPPGTGKTSTILALARRIYGTSNM----------- 108 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----W 131 +QM L L+ S + R I + + ++ +A+TG + Sbjct: 109 ------RQM-------VLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASY 155 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E Sbjct: 156 KLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKE 215 Query: 192 NNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 ++ + EQ++I ++ VK+ + G + RA+ +L Sbjct: 216 QDIRSLVDHVIEKEQVQIQP-EAVSSLVKL-SKGDMRRALNVLQ 257 >gi|307203721|gb|EFN82681.1| Replication factor C subunit 3 [Harpegnathos saltator] Length = 354 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 42/71 (59%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ VD + R+A +AL +++E+ IL ++++ +L IRSRC+ I+ + + Sbjct: 128 FKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVRIRVPAPT 187 Query: 191 ENNLYKALEQL 201 + + L + Sbjct: 188 ASEIKNILHSI 198 >gi|298714917|emb|CBJ27673.1| conserved unknown protein [Ectocarpus siliculosus] Length = 361 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +V+++ VD + + A L +++E IL+ H+ ++ +RSRCL ++ + SE Sbjct: 139 KVVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPSE 198 Query: 192 NNLYKAL 198 + + L Sbjct: 199 SEVCSVL 205 >gi|62185124|ref|YP_219909.1| DNA polymerase III subunit delta' [Chlamydophila abortus S26/3] gi|62148191|emb|CAH63948.1| putative DNA polymerase III subunit [Chlamydophila abortus S26/3] Length = 266 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 +GK R + +++ R I+ +++ G++++ +I VD M A + LK LEE P + Sbjct: 46 SGKGR-LHSIEIPRDIKKQIAILPYEGHYKIYIIHEVDRMTLPAISVFLKVLEEAPSHNV 104 Query: 163 FILISHASPTILSTIRSRCLSI 184 +L S I +TI SR LSI Sbjct: 105 ILLTSAKLQRIPATILSRSLSI 126 >gi|4506489|ref|NP_002906.1| replication factor C subunit 3 isoform 1 [Homo sapiens] gi|3915601|sp|P40938|RFC3_HUMAN RecName: Full=Replication factor C subunit 3; AltName: Full=Activator 1 38 kDa subunit; Short=A1 38 kDa subunit; AltName: Full=Activator 1 subunit 3; AltName: Full=Replication factor C 38 kDa subunit; Short=RF-C 38 kDa subunit; Short=RFC38 gi|18921089|gb|AAL82505.1|AF484446_1 replication factor C (activator 1) 3 (38kD) [Homo sapiens] gi|1498259|gb|AAB07268.1| replication factor C, 38-kDa subunit [Homo sapiens] gi|12652795|gb|AAH00149.1| Replication factor C (activator 1) 3, 38kDa [Homo sapiens] gi|55662184|emb|CAH70947.1| replication factor C (activator 1) 3, 38kDa [Homo sapiens] gi|60812373|gb|AAX36209.1| replication factor C 3 [synthetic construct] gi|119628942|gb|EAX08537.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo sapiens] gi|119628943|gb|EAX08538.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo sapiens] gi|123980104|gb|ABM81881.1| replication factor C (activator 1) 3, 38kDa [synthetic construct] gi|123994885|gb|ABM85044.1| replication factor C (activator 1) 3, 38kDa [synthetic construct] gi|261860576|dbj|BAI46810.1| replication factor C (activator 1) 3, 38kDa [synthetic construct] Length = 356 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|328866732|gb|EGG15115.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 352 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 39/62 (62%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++++ VD ++++A +AL +++E+ IL ++ ++ IRSRCL I+ + Sbjct: 127 GAFKIVILNEVDKLSKDAQHALRRTMEKYAASCRLILCCDSTSRVIDPIRSRCLGIRVPA 186 Query: 189 LS 190 S Sbjct: 187 PS 188 >gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus] Length = 349 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 112 VDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F N G ++I++D D M A AL +++E F L + Sbjct: 113 IDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARA 224 + I+ I+SRC +++ L++ + + E+ K+ D + + A G + +A Sbjct: 173 NTEEIIEPIQSRCAMLRYGKLTDAQILAKVLEVCEKEKLSYTDDGMEAIVFTAQGDMRQA 232 Query: 225 IKILH 229 + L Sbjct: 233 LNNLQ 237 >gi|291408671|ref|XP_002720641.1| PREDICTED: replication factor C 3 [Oryctolagus cuniculus] Length = 356 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 41/66 (62%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLS 190 + + S Sbjct: 183 RVPAPS 188 >gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1 [Acyrthosiphon pisum] gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2 [Acyrthosiphon pisum] Length = 363 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 123 IDTVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQQALRRTMELWSNTTRFALACN 182 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC +++ LS+ + + Sbjct: 183 NSDKIIEAIQSRCAMLRYGKLSDQEVMTQM 212 >gi|301765690|ref|XP_002918266.1| PREDICTED: replication factor C subunit 3-like [Ailuropoda melanoleuca] gi|281349170|gb|EFB24754.1| hypothetical protein PANDA_006686 [Ailuropoda melanoleuca] Length = 356 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|54696202|gb|AAV38473.1| replication factor C (activator 1) 3, 38kDa [synthetic construct] gi|60824442|gb|AAX36680.1| replication factor C 3 [synthetic construct] gi|61364953|gb|AAX42630.1| replication factor C [synthetic construct] gi|61367122|gb|AAX42955.1| replication factor C 3 [synthetic construct] gi|61371558|gb|AAX43689.1| replication factor C 3 [synthetic construct] Length = 357 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|159115535|ref|XP_001707990.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803] gi|157436099|gb|EDO80316.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803] Length = 373 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 37 LLFEGEQGIGKAT--LGFRYAGHVLQNPDFSKAPVRM---CNPDPCSPFVKQMASHALHD 91 LL G +G G+ T LG+ + + +Q D+ P M N D C + A H Sbjct: 36 LLVHGPRGSGRHTRVLGYIRSVYGVQTLDY--IPSTMLYETNTDTCEVNILSTACH---- 89 Query: 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALL 151 LNP V + + ++ S ++ ++V+++ D ++ A AL Sbjct: 90 -----LELNPSEMGNHDVFIIQTV--LKETASTSSIGDKFKVVVLQDADKLSFTAQQALR 142 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + +E+ IL++ + ++ I SRC I+ S+ + ALE Sbjct: 143 RLMEQYAATCKLILMAESISGLIPPIVSRCFCIRVPGFSDEEIVHALE 190 >gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana] Length = 332 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 128 TGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +GY +++I++D D M +A NAL +++E + F I + I+ + SRC Sbjct: 102 SGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 161 Query: 184 IKFNSLSE 191 +F LSE Sbjct: 162 FRFKPLSE 169 >gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704] gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704] Length = 278 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + + L+Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDTQIVERLDQI 197 >gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon pisum] Length = 359 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 31/177 (17%) Query: 117 RIRYFLSLTAN--------TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E + F LI + Sbjct: 119 KVKTFAQLTASDRRPDGKPCPPFKIVVLDEADSMTAPAQAALRRTIERETKTTRFCLICN 178 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-----------------KIMGWDSKRD 211 I+ + SRC +F LS + LE + G D +R Sbjct: 179 YVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRA 238 Query: 212 FVKIAAYGSVARAIKILHYDCDKIISSYID-----LIHIPRQEYALQKMQQIADELL 263 + + + + I D +++ + D +I + R Y QKM ++L+ Sbjct: 239 ITSLQSTARLKGEVGIEEVDVLEVVGTVPDIWLDRMIDMGRM-YDYQKMDGFVEDLI 294 >gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 342 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 40/196 (20%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + E I L +G M H L + G G GK T A L P+ Sbjct: 22 YRPRVVKDVASQEQIVGVLENALKTGNMPHCLFY-GPPGTGKTTTALAIAKE-LYGPELY 79 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K V+ LN + +V+ +I+ F S Sbjct: 80 KQRVK---------------------------ELNASDERGISVVR----NKIKTFASQA 108 Query: 126 ANT---GY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 GY ++++++D D M +A +AL + +E + F L+ + I+ I Sbjct: 109 VGAPAPGYPSPPYKILILDEADAMTGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIA 168 Query: 179 SRCLSIKFNSLSENNL 194 SRC +F+ L++ + Sbjct: 169 SRCAKFRFSPLAQETM 184 >gi|73993384|ref|XP_534500.2| PREDICTED: similar to Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) (RFC38) (Replication factor C subunit 3) [Canis familiaris] Length = 426 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 165 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 224 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 225 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 258 >gi|255715673|ref|XP_002554118.1| KLTH0E14696p [Lachancea thermotolerans] gi|238935500|emb|CAR23681.1| KLTH0E14696p [Lachancea thermotolerans] Length = 384 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFS-KAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 LLF G G GK T + + + K VR +P +++ + + +L Sbjct: 65 LLFYGPNGAGKKTRCMALLQSIFGSGVYKLKIDVRQFT----TPSNRKLELNVVSSPYHL 120 Query: 96 SYSLNPKTGKWRTVI-----TVDEIRRIRYFLSLTANTG----YWRVIMIDPVDGMNRNA 146 + + R VI V ++ ++ + + A TG ++ ++I+ D + R+A Sbjct: 121 EITPSDMGNNDRIVIQELLKEVAQMEQVDFQTASGAETGGLAHRYKCVIINEADSLTRDA 180 Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 AL +++E+ + + FI++ + ++++ I+SRCL ++ Sbjct: 181 QAALRRTMEKYSRNIRFIMLCESMSSMIAPIKSRCLLVR 219 >gi|149730139|ref|XP_001494707.1| PREDICTED: similar to Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) [Equus caballus] Length = 356 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|61367115|gb|AAX42954.1| replication factor C 3 [synthetic construct] Length = 357 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|55981829|ref|YP_145126.1| DNA polymerase III subunit delta' [Thermus thermophilus HB8] gi|55773242|dbj|BAD71683.1| DNA polymerase III delta prime subunit [Thermus thermophilus HB8] Length = 268 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 32/198 (16%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P + + GHE + L + LLF G +G+G+ T+ YA + N F Sbjct: 2 ALHPAHPGAIIGHEAVLALLPRLTA-----QTLLFSGPEGVGRRTVARWYAWGL--NRGF 54 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG--KWRTVITVDEIRRIRYFL 122 P P + H D L + PK + R + ++E+ + + Sbjct: 55 ---------PPPS------LGEHP--DVL----EVGPKARDLRGRAEVRLEEVAPLLEWC 93 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S +V ++D + AANALLK LEEPP +LI+ + T+L T+ SR Sbjct: 94 SSHPRERV-KVAILDSAHLLTEAAANALLKLLEEPPSYARIVLIAPSRATLLPTLASRAT 152 Query: 183 SIKFNSLSENNLYKALEQ 200 + F + E L +AL Q Sbjct: 153 EVAFAPVPEEAL-RALTQ 169 >gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143] gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88] Length = 354 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDGQILKRLTQI 197 >gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10] gi|150842719|gb|EDN17912.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10] Length = 344 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F LI + I+ + SRC +F SL Sbjct: 142 YKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLD 201 Query: 191 ENN 193 + N Sbjct: 202 KGN 204 >gi|13357575|ref|NP_077849.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971145|ref|ZP_02553422.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282035|ref|ZP_02689702.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308182|ref|ZP_02690857.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762264|ref|YP_001752099.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356841|pir||G82944 DNA polymerase III delta subunit UU019 [imported] - Ureaplasma urealyticum gi|6898964|gb|AAF30424.1|AE002101_7 DNA polymerase III delta subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827841|gb|ACA33103.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902529|gb|EDT48818.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676002|gb|EDT87907.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701092|gb|EDU19374.1| DNA polymerase III delta subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 264 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +I +D ++ NALLK +EEPP+ + I + +L TI+SRC Sbjct: 86 LIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRC 132 >gi|294155946|ref|YP_003560330.1| DNA polymerase III, delta' subunit [Mycoplasma crocodyli MP145] gi|291600054|gb|ADE19550.1| DNA polymerase III, delta' subunit [Mycoplasma crocodyli MP145] Length = 307 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++I+I VD N N++LK +EEP Q L +L + +L TI+SR I Sbjct: 91 KIIIIQNVDLATLNGINSILKIIEEPIQNSLILLTTSNISRVLPTIKSRSFLI 143 >gi|17554730|ref|NP_498521.1| RFC (DNA replication factor) family member (rfc-4) [Caenorhabditis elegans] gi|1703051|sp|P53016|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName: Full=Activator 1 subunit 4 gi|1072162|gb|AAA81689.1| Rfc (dna replication factor) family protein 4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 334 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++I++D VD M R A A+ + +E+ + FILI + ++ + SRC +F SL Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 177 >gi|54696204|gb|AAV38474.1| replication factor C (activator 1) 3, 38kDa [Homo sapiens] gi|61357169|gb|AAX41345.1| replication factor C 3 [synthetic construct] Length = 356 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans] Length = 409 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 28/235 (11%) Query: 1 MIDRA--FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 MI+R + P + GH+DI ++++ S R+ H LL+ G G GK + A + Sbjct: 58 MINRVEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLY-GPPGTGKTSTVLALARRI 116 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 N + + + + D V + + +S PK G Sbjct: 117 YGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQI-FSAAPKAGD------------- 162 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +++I++D D M A AL + +E+ F +I++ + + + Sbjct: 163 -------TALATFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALL 215 Query: 179 SRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 SRC +F+ L + ++ K +E+ + D + + G + RA+ +L Sbjct: 216 SRCTRFRFSPLKDQDIRNLVDKVIEEENVNITQDATDSLVSLSKGDMRRALNVLQ 270 >gi|109120427|ref|XP_001102503.1| PREDICTED: replication factor C subunit 3 isoform 2 [Macaca mulatta] gi|67970669|dbj|BAE01677.1| unnamed protein product [Macaca fascicularis] Length = 356 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|52549742|gb|AAU83591.1| replication factor C subunit [uncultured archaeon GZfos31B6] Length = 416 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GHE I L S + H +L+ G + GK + F VL + Sbjct: 81 YRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLY-GAKNTGKMSAVF-----VLARALYG 134 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHD--FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + S F + + + D F L + +PK + +TVI+V + + I + Sbjct: 135 EQWENNLAIFDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQ-KTVISVFK-QVINEYAG 192 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + A +R+I ID + ++ +A +AL + +E+ + FIL + P ++ +RSR L+ Sbjct: 193 MAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRSRGLN 252 Query: 184 IKFNSLSE 191 + F+ S+ Sbjct: 253 LFFDRASD 260 >gi|46199811|ref|YP_005478.1| putative DNA polymerase III subunit [Thermus thermophilus HB27] gi|46197438|gb|AAS81851.1| putative DNA polymerase III subunit [Thermus thermophilus HB27] Length = 268 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 32/198 (16%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 A P + + GHE + L + LLF G +G+G+ T+ YA + N F Sbjct: 2 ALHPAHPGAIIGHEAVLALLPRLTA-----QTLLFSGPEGVGRRTVARWYAWGL--NRGF 54 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTG--KWRTVITVDEIRRIRYFL 122 P P + H D L + PK + R + ++E+ + + Sbjct: 55 ---------PPPS------LGEHP--DVL----EVGPKARDLRGRAEVRLEEVAPLLEWC 93 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S + +V ++D + AANALLK LEEPP +LI+ + T+L T+ SR Sbjct: 94 S-SHPRERVKVAILDSAHLLTEAAANALLKLLEEPPSYARIVLIAPSRATLLPTLASRAT 152 Query: 183 SIKFNSLSENNLYKALEQ 200 + F + E L +AL Q Sbjct: 153 EVAFAPVPEEAL-RALTQ 169 >gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi] gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi] Length = 315 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +VI++D D M A AL +++E + F LI + I+ + SRC +F S+S Sbjct: 129 KVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISS 188 Query: 192 NNLYKALE 199 + K L+ Sbjct: 189 ESQEKRLK 196 >gi|296203698|ref|XP_002749009.1| PREDICTED: replication factor C subunit 3 [Callithrix jacchus] Length = 356 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|114649328|ref|XP_509625.2| PREDICTED: replication factor C 3 isoform 4 [Pan troglodytes] Length = 356 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4] gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4] gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung) [Aspergillus nidulans FGSC A4] Length = 289 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L+Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQIVKRLKQV 197 >gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720] gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720] Length = 339 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 35/209 (16%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL- 189 +++I++D D M +A +AL +++E F LI + I+ + SRC +F SL Sbjct: 121 YKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLD 180 Query: 190 SENNLYK---ALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILHYDCD------------ 233 EN L + +EQ I + DS + + + G + +AI L Sbjct: 181 GENALSRLRYVVEQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKI 240 Query: 234 KIISSYID------LIHIPRQEYALQKMQQIADELLS--QDQKIAFDFLIEFILKEICKS 285 K IS +D L+ R + Q Q + D +L Q+ A F+L + Sbjct: 241 KEISGVVDDASMETLVGAIRAKNPKQIAQVVKDTVLEGWSAQQTAAQLHDVFLLDD---- 296 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHA 314 ALS Q E + IA++ F KR+++ Sbjct: 297 ----ALSSQ--EKNDIARLLFETDKRLNS 319 >gi|62896703|dbj|BAD96292.1| replication factor C 3 isoform 1 variant [Homo sapiens] Length = 356 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|198273288|ref|ZP_03205824.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|198249808|gb|EDY74588.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 264 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +I +D ++ NALLK +EEPP+ + I + +L TI+SRC Sbjct: 86 LIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRC 132 >gi|167975306|ref|ZP_02557583.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|168362383|ref|ZP_02695562.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554429|ref|YP_002284432.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550961|ref|ZP_03771910.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903507|gb|EDT49796.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659990|gb|EDX53370.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|209541930|gb|ACI60159.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225380115|gb|EEH02477.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 264 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +I +D ++ NALLK +EEPP+ + I + +L TI+SRC Sbjct: 86 LIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRC 132 >gi|226469846|emb|CAX70204.1| Replication factor C 38kD subunit [Schistosoma japonicum] Length = 302 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ D + R+A +AL +++E+ IL + ++ I+S RSRCL I+ ++ S Sbjct: 129 FKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPS 188 Query: 191 ENNLYKAL-------------EQLKIMGWDSKRDFVKIAAYGSVAR 223 + + + L E K + S+R+ + + VAR Sbjct: 189 TDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLFAEVAR 234 >gi|119467812|ref|XP_001257712.1| DNA replication factor C subunit Rfc4, putative [Neosartorya fischeri NRRL 181] gi|119405864|gb|EAW15815.1| DNA replication factor C subunit Rfc4, putative [Neosartorya fischeri NRRL 181] Length = 348 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 115 IRRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 + RI+ F +T G +++++D D M A AL +++E F + S Sbjct: 105 MSRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNK 164 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I+ I+SRC +++ L++ + K L+Q+ Sbjct: 165 IIEPIQSRCAILRYARLTDAQVVKRLKQI 193 >gi|322818936|gb|EFZ26208.1| replication factor C, subunit 3, putative [Trypanosoma cruzi] Length = 355 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 38/214 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + HEDI + SG + H LLF G G GK T + + L D Sbjct: 24 YRPVTLDEVVAHEDILSTTRRLMDSGNLPH-LLFYGPPGTGKTTT-IKACAYYLFGKDRI 81 Query: 66 KAPVRMCNP------DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +A V N D V++ AS + F + S P ++ VI Sbjct: 82 RANVLEMNASDDRGIDVVRQQVREFASTS--SFYFASTPAAPTIAAFKLVI--------- 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +D D M+ +A AL + +E+ + V F ++ + I+ ++S Sbjct: 131 ----------------LDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQS 174 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 RC +F + ++ + L +LK + + F Sbjct: 175 RCTRFRFAPVKKSAM---LSRLKFVAQEEGVRFT 205 >gi|307718252|ref|YP_003873784.1| DNA polymerase III domain-containing protein [Spirochaeta thermophila DSM 6192] gi|306531977|gb|ADN01511.1| DNA polymerase III domain protein [Spirochaeta thermophila DSM 6192] Length = 390 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 R + V +RRI + L+++ V++++ D + + N+LLK LEEP FIL+ Sbjct: 179 RDGVPVAMVRRILSSVHLSSSRTP-HVVILEHADTLQEASRNSLLKELEEPSAGTYFILL 237 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + I+ TI SR + S + + L ++ Sbjct: 238 TRRRTAIIPTILSRVRHYQLFERSTEEMRRVLARI 272 >gi|167972274|ref|ZP_02554551.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974297|ref|ZP_02556574.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167988963|ref|ZP_02570634.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195867496|ref|ZP_03079500.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225550992|ref|ZP_03771938.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209510|gb|EDU06553.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018625|gb|EDU56665.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998078|gb|EDU67175.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660972|gb|EDX54225.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378807|gb|EEH01172.1| DNA polymerase III delta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 264 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +I +D ++ NALLK +EEPP+ + I + +L TI+SRC Sbjct: 86 LIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRC 132 >gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1] gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1] Length = 354 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDGQILKRLTQI 197 >gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 313 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 39/198 (19%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++FD V G +DI + L + H +L G G+GK T A V Sbjct: 11 QSFDEV-----IGQKDIVEKLKAMSSKKEIQHMIL-SGPPGVGKTTCAVVLAKEVF---- 60 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 S +F+ L+ S + K +VI +++ F Sbjct: 61 ---------------------GSTWNQNFIELNASDDRKL----SVIQ----GKVKEFAR 91 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 +++I+ D D + + A AL + +EE F+ + I+ ++SRC Sbjct: 92 TKPIDSPFKIILFDEADSLTQEAQQALRRMMEEYSSTCRFLFSVNYQSNIIEPLQSRCAI 151 Query: 184 IKFNSLSENNLYKALEQL 201 ++F LS+ ++ K ++++ Sbjct: 152 LRFQPLSKTDVTKFIDRI 169 >gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum] Length = 354 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LLF G G GK + + +NPD V L ++ Sbjct: 65 LLFYGPPGTGKTSAAVALCRELFKNPDVYSDRV-----------------------LEMN 101 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 S RT I R + L ++ +VI++D D M A AL +++E+ Sbjct: 102 ASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVIILDEADAMTDAAQAALRRTMEK 161 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + F LI + I+ + SRC +F LS + + LE Sbjct: 162 ESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLE 204 >gi|309358101|emb|CAP34442.2| CBR-RFC-4.1 protein [Caenorhabditis briggsae AF16] Length = 340 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++I++D VD M R A A+ + +E+ + FILI + ++ + SRC +F SL Sbjct: 121 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 178 >gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7] gi|42559516|sp|Q975D3|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|15621473|dbj|BAB65468.1| 327aa long hypothetical replication factor C small subunit [Sulfolobus tokodaii str. 7] Length = 327 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 42/193 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R+ D + NQ+ DI + L ++ M H LLF G G GK T Sbjct: 16 RSLDDIVNQK-----DIVERLKRFVKDKNMPH-LLFSGPPGTGKTTAALALV-------- 61 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL 122 H L+ Y Y L R + D IR +++ F Sbjct: 62 -----------------------HDLYGDNYRQYFLELNASDERGI---DVIRNKVKEFA 95 Query: 123 SLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 A ++V+++D D M +A AL +++E + FIL + I+ I+SR Sbjct: 96 RTVAGGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRT 155 Query: 182 LSIKFNSLSENNL 194 +F L + ++ Sbjct: 156 ALFRFYPLKKEDV 168 >gi|297693827|ref|XP_002824204.1| PREDICTED: replication factor C subunit 3-like isoform 2 [Pongo abelii] Length = 305 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVVQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit, putative [Tribolium castaneum] gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum] Length = 355 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +++ F LTA+ ++++++D D M A AL +++E+ + F LI + Sbjct: 113 KVKTFAQLTASGTRPDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKESRSTRFCLICN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 I+ + SRC +F L+E + + L Sbjct: 173 YVSRIIEPLTSRCTKFRFKPLNEAMILERL 202 >gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori] gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori] Length = 340 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L ++ Sbjct: 98 IDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 157 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE 199 S I+ I+SRC ++++ LS+ L K +E Sbjct: 158 NSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 189 >gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL Brener] gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi] Length = 355 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 38/214 (17%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + HEDI + SG + H LLF G G GK T + + L D Sbjct: 24 YRPVTLDEVVAHEDILSTTRRLMDSGNLPH-LLFYGPPGTGKTTT-IKACAYYLFGKDRI 81 Query: 66 KAPVRMCNP------DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +A V N D V++ AS + F + S P ++ VI Sbjct: 82 RANVLEMNASDDRGIDVVRQQVREFASTS--SFYFASAPAAPTIAAFKLVI--------- 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +D D M+ +A AL + +E+ + V F ++ + I+ ++S Sbjct: 131 ----------------LDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQS 174 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFV 213 RC +F + ++ + L +LK + + F Sbjct: 175 RCTRFRFAPVKKSAM---LSRLKFVAQEEGVRFT 205 >gi|167945332|ref|ZP_02532406.1| DNA polymerase III, subunits gamma and tau [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG 51 ++ R + P +L G E + LS + R+HHA LF G +G+GK TL Sbjct: 5 VLARKWRPRLFNQLVGQEHVVNALSNALDNDRLHHAYLFTGTRGVGKTTLA 55 >gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae] gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae] gi|187040034|emb|CAP21143.1| CBR-RFC-4.2 protein [Caenorhabditis briggsae AF16] Length = 335 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++I++D VD M R A A+ + +E+ + FILI + ++ + SRC +F SL Sbjct: 121 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 178 >gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895] gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895] Length = 321 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 32/193 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G+++ + L Q G M H ++ G GIGK T H L +S Sbjct: 16 YRPKLLKDVVGNDETVERLQQIARDGNMPH-MIISGLPGIGKTT-SIHCLAHELLGDAYS 73 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 +A + + D V + + F +L P Sbjct: 74 QAVLELNASDDRGIDV---VRNQIKQFAQKKCTLPP------------------------ 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G ++I++D D M A AL +++E F + S I+ ++SRC ++ Sbjct: 107 ---GKHKIIILDEADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILR 163 Query: 186 FNSLSENNLYKAL 198 ++ LS+ + K L Sbjct: 164 YSKLSDEQVLKRL 176 >gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica] gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica] Length = 378 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E + F LI + I+ + SRC +F L Sbjct: 135 FKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLD 194 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 N+ L EQL + D + + A G + RAI IL Sbjct: 195 GNDALARLRHVSDAEQLSV--EDGVLEKILEVANGDLRRAITILQ 237 >gi|148673951|gb|EDL05898.1| mCG17786, isoform CRA_b [Mus musculus] Length = 289 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 142 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 201 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 202 RVPAPSIEDICSVL 215 >gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796] Length = 264 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I++F L G +++++D D M A AL +++E F + Sbjct: 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ LS+ ++ K L Q+ Sbjct: 146 QSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQI 178 >gi|313226190|emb|CBY21333.1| unnamed protein product [Oikopleura dioica] Length = 357 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 40/70 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++VI+I + + ++A + L +++E+ IL+S ++ ++ +RSRCL I+ + S Sbjct: 129 FKVIVITEANRLTKDAQHGLRRTMEKYMSTCRMILLSESTSKLIPALRSRCLGIRVQAPS 188 Query: 191 ENNLYKALEQ 200 + + L Q Sbjct: 189 TEEVKQCLMQ 198 >gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei] gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei] Length = 362 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++I++D VD M R A A+ + +E+ + FILI + ++ + SRC +F SL Sbjct: 134 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 191 >gi|218185516|gb|EEC67943.1| hypothetical protein OsI_35669 [Oryza sativa Indica Group] Length = 860 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 31/210 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P L G + + L+ R+ A LF G +G GK + ++ + Sbjct: 90 LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAAL--- 146 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-----EIR 116 + V + PC A DF TG +I VD I Sbjct: 147 -----SCVAIGENKPCG------ACMECTDFF---------TGNGINLIEVDASNRKSIN 186 Query: 117 RIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 RIR+ + +A + ++V ++D ++ +A +K L+EP +V+FI I+ + Sbjct: 187 RIRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENL 246 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + SRC F+ + + ++ L ++ + Sbjct: 247 PRAVISRCQKYMFSKIKDIDIVCRLRKIAV 276 >gi|316975429|gb|EFV58873.1| replication factor C subunit 2 [Trichinella spiralis] Length = 251 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D IR +++ F +T G +++++D D M A AL +++E + F+ + Sbjct: 21 IDVIRNKVKMFAQQRVTLPAGKQKIVILDEADSMTDGAQQALRRTMEIYSKTTRFVFACN 80 Query: 169 ASPTILSTIRSRCLSIKFNSL 189 S I+ I+SRC I+F L Sbjct: 81 ESDKIIEPIQSRCAIIRFTYL 101 >gi|225706298|gb|ACO08995.1| Replication factor C subunit 3 [Osmerus mordax] Length = 356 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 36/56 (64%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL+I+ Sbjct: 129 FKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRCLAIRV 184 >gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi] gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi] Length = 328 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 17/157 (10%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I++D D M A NA+ + +E + V F LI + I I+SRC S +F Sbjct: 100 LKLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFPLKE 159 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 E L KAL+ +K + V I G V I++ D +I++ Q Sbjct: 160 EYMLNKALDI-------AKSENVNITKNG-VESLIRVGRGDMRRILNCL--------QVV 203 Query: 251 ALQKMQQIADE-LLSQDQKIAFDFLIEFILKEICKSA 286 +L + DE ++ I I+FIL+ + KS Sbjct: 204 SLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKST 240 >gi|256080226|ref|XP_002576383.1| replication factor C / DNA polymerase III gamma-tau subunit [Schistosoma mansoni] gi|238661650|emb|CAZ32620.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Schistosoma mansoni] Length = 357 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ D + R+A +AL +++E+ IL + ++ I+S RSRCL I+ ++ S Sbjct: 129 FKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPS 188 Query: 191 ENNLYKAL-------------EQLKIMGWDSKRDFVKIAAYGSVAR 223 + + + L E K + S+R+ + Y VA+ Sbjct: 189 IDEIVEILRNTARREGHSMPVELAKRIALASERNLRRALLYAEVAK 234 >gi|156836873|ref|XP_001642477.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM 70294] gi|156113011|gb|EDO14619.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM 70294] Length = 356 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 16/71 (22%), Positives = 45/71 (63%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ ++I+ D + R+A AL +++E+ + + I++ + +I+ I+SRCL I+ ++ + Sbjct: 135 YKCVVINEADSLTRDAQAALRRTMEKYSKNIRLIMVCDSMSSIIPPIKSRCLMIRCSAPT 194 Query: 191 ENNLYKALEQL 201 ++ + + L ++ Sbjct: 195 DDEVVQNLMEV 205 >gi|26335097|dbj|BAC31249.1| unnamed protein product [Mus musculus] Length = 270 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 44/74 (59%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T++ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICSVL 196 >gi|307595017|ref|YP_003901334.1| Replication factor C [Vulcanisaeta distributa DSM 14429] gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429] Length = 327 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 40/71 (56%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +R+I++D D M +A AL + +E V FIL+++ I+ I+SRC +F+ L Sbjct: 104 FRLIILDEADNMTPDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLP 163 Query: 191 ENNLYKALEQL 201 ++ + L ++ Sbjct: 164 KDAVLGRLREI 174 >gi|255082302|ref|XP_002504137.1| predicted protein [Micromonas sp. RCC299] gi|226519405|gb|ACO65395.1| predicted protein [Micromonas sp. RCC299] Length = 355 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 38/66 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++++ VD +++ A + L +++E+ ILI + +L +RSRCL ++ + S Sbjct: 132 YKVLLLNEVDRLSKEAQHGLRRTMEKYSSACRLILICTSVSKVLDAVRSRCLPVRVAAPS 191 Query: 191 ENNLYK 196 + K Sbjct: 192 VETVEK 197 >gi|125536334|gb|EAY82822.1| hypothetical protein OsI_38032 [Oryza sativa Indica Group] Length = 950 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 21/205 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + F P L G + + L C G++ LF G +G GK + +A + Sbjct: 279 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAAL--- 335 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + PC F K+ + +S + K +D + R++ Sbjct: 336 -----NCLSLEEQRPCG-FCKE---------CVILFSGRSRDVKELDAAKMDRLGRVKAL 380 Query: 122 L---SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L SL + ++V ++D + +A +A+LKSL+EP + ++I+I+ ++ T Sbjct: 381 LKSASLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSI 440 Query: 179 SRCLSIKFNSLSENNLYKALEQLKI 203 + C F + ++ LE++ I Sbjct: 441 THCQKFHFPKIKVADIVYRLERICI 465 >gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23] Length = 357 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ LS+ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYAKLSDAQVVKRLMQI 202 >gi|149635763|ref|XP_001509935.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 356 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 43/74 (58%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T+ ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL++ Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPPIRSRCLAV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSVEDICHVL 196 >gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3] gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3] Length = 324 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +V+++D D M A A+ + +E + F+ + S ++ I+SRC ++F+ Sbjct: 102 GRHKVVLLDESDSMTDAAQQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSR 161 Query: 189 LSENNLYKAL 198 + EN + L Sbjct: 162 VEENEIAARL 171 >gi|167387176|ref|XP_001738052.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165898879|gb|EDR25632.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 363 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-----NPDP----CSPF-VKQMAS 86 LLF G +G GK T Y ++ + P P SP+ V+ + S Sbjct: 34 LLFHGPEGSGKYTRALLYLKNIYGDGVMKIEPSTTIIDVKGKPKEINLRSSPYHVELIPS 93 Query: 87 HALH-DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL-------SLTANTGYWRVIMIDP 138 +A D L + + T ++T+ ++ + + I + + S N +RVIMI Sbjct: 94 NATESDKLVIQEYVKSLTT-FQTLSSLIQQKSINHLILTSESKQSYKENQTKFRVIMIFD 152 Query: 139 VDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 D + +A +L +++E + FIL +++ IRSRC+ I+ + + K + Sbjct: 153 ADHLTNDAQQSLRRTMETGSEVCRFILFCTNPCSVIQPIRSRCVMIRVPLPDKQQMTKIV 212 Query: 199 EQL----KIMG 205 E+L KI+G Sbjct: 213 EKLGGNEKIVG 223 >gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314] gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314] gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1] Length = 323 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 112 VDEIR-RIRYF--LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F ++ G ++I++D D M A AL +++E F + Sbjct: 87 IDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRTIEIYSNTTRFAFACN 146 Query: 169 ASPTILSTIRSRCLSIKFNSLS-ENNLYKALEQLKI 203 S I+ ++SRC +++N LS E L + LE +K+ Sbjct: 147 QSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182 >gi|323451834|gb|EGB07710.1| hypothetical protein AURANDRAFT_59087 [Aureococcus anophagefferens] Length = 313 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 117 RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +I+ F N G +++++D D M A A+ +++E F L + S I Sbjct: 84 KIKMFAKKKVNLPPGAHKLVILDEADSMTAAAQQAMRRTMELFSGTTRFALACNTSSKIS 143 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQL 201 I+SRC ++F LS+ L K L + Sbjct: 144 EPIQSRCAILRFTRLSDKELLKRLTHV 170 >gi|238027961|ref|YP_002912192.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237877155|gb|ACR29488.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 455 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 48/227 (21%) Query: 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMC-NPDP 76 +++E + GR H ++ G++G+GK++LG A +Q S +PV + +PD Sbjct: 35 KELETIKQSLFAPGR--HVFIY-GDRGVGKSSLGQTAA---VQYQSASASPVFVSGSPDD 88 Query: 77 C-SPFVKQMASHALH---------------DFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S + + + AL D + S +T V D IR I Sbjct: 89 TFSTVIANIVTQALRQPRTESVKTTRSASIDMARVKMSAGTETS---AVDIADRIRSIGD 145 Query: 121 FLSLTANTGYWR----VIMIDPVDGM----NRNAANALLKSLEEPPQKVLFILISHASPT 172 ++L R ++ID D + RN ALLK + + + FI T Sbjct: 146 AVALLEEVAEKRDGNTAVVIDEFDAILDAGERNKFAALLKQMGDRSVNIKFIF------T 199 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKI--MGWDSKRDFVKIAA 217 + L +S Y+ LEQ+++ +GWD++R+ V+ AA Sbjct: 200 GIGKSLDELLGAHQSS------YRQLEQVELPRLGWDARREIVQAAA 240 >gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus] gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus] gi|296491286|gb|DAA33349.1| replication factor C 4 [Bos taurus] Length = 337 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ + ++ VKI+ G +A +++ D K I+ Sbjct: 204 DK-----IQQQRLLDI-ADKEHVKISNEG-IAYLVQVSEGDLRKAIT 243 >gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36] gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36] Length = 323 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M A AL +++E F + S I+ ++SRC +++N Sbjct: 107 GRQKIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNR 166 Query: 189 LS-ENNLYKALEQLKI 203 LS E L + LE +K+ Sbjct: 167 LSDEEVLARLLEIIKM 182 >gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior] Length = 355 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 39/190 (20%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+ED LS + G + ++ G G+GK T A +L P F +A Sbjct: 54 IVGNEDTVSRLSVFAQHGNTPN-IIIAGPPGVGKTTTILCLA-RILLGPAFKEA------ 105 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTAN--TGY 130 L + + + G +D +R +I+ F N G Sbjct: 106 --------------------VLELNASNERG-------IDVVRNKIKMFAQKKVNLPKGK 138 Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I++D D M A AL +++E F L + + I+ I+SRC +++ L+ Sbjct: 139 HKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLT 198 Query: 191 ENN-LYKALE 199 + L K LE Sbjct: 199 DAEVLAKVLE 208 >gi|91773925|ref|YP_566617.1| replication factor C small subunit 2 [Methanococcoides burtonii DSM 6242] gi|91712940|gb|ABE52867.1| Replication factor C small subunit [Methanococcoides burtonii DSM 6242] Length = 341 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 104/230 (45%), Gaps = 24/230 (10%) Query: 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA----GHVLQNPDFSKA 67 + + G+ + L SG + H L+F G GK++ F A G +N +F+ Sbjct: 15 EDIVGNGESVNSLVHLVGSGNLPH-LVFHGPVNSGKSSTAFALAYELYGEYYEN-NFTYF 72 Query: 68 PVRMCNPDPCSPFVKQMASHALHD--FLYLSYSLNPKTGKWRTVITV-DEIRRIRYFLSL 124 S F Q + + D F+++ + +PK + +VI++ E+ I F + Sbjct: 73 N--------ASDFFDQGKRYLVRDKRFVHIIGTDDPKK-IYSSVISIFKEV--INEFAGM 121 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +++I ID V+ + A +AL + +E+ + FIL + +++ +RSR L + Sbjct: 122 GSLDADYKIIFIDNVESLETGAQHALRRIMEKYTRTCRFILSTTQPSKLIAPLRSRGLEL 181 Query: 185 KFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F + ++ L E+ I D D + A G+V++A+ L + Sbjct: 182 FFTYVPDDALRSFVISVAEKEAISISDDGYDALLYYAGGNVSKALLTLQF 231 >gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407] Length = 357 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 111 IDVVRNRIKGFAQKKVTLPAGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 171 QSNKIIEPLQSRCAILRYARLTDAQVVKRLLQI 203 >gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group] Length = 1050 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 35/226 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQ 60 + + F P + + G + + LS ++ +F G G GK + +A + Sbjct: 352 LTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCH 411 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--------ITV 112 +P+ +P PC +A H L GK R+V I + Sbjct: 412 SPE---------HPRPCDSCTSCIA-HNL--------------GKSRSVMEIGPVGNIDM 447 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D I + + L+ ++RV + D D + + + + K ++ P++V+FIL+S + Sbjct: 448 DGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVS-PNLD 506 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAA 217 + I SRC F L E ++ L+ + D RD +K+ A Sbjct: 507 LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRDALKLIA 552 >gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str. Silveira] Length = 352 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQIVKRLMQI 197 >gi|189219649|ref|YP_001940290.1| ATPase involved in DNA replication HolB [Methylacidiphilum infernorum V4] gi|189186507|gb|ACD83692.1| ATPase involved in DNA replication HolB [Methylacidiphilum infernorum V4] Length = 294 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%) Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN------SLSENNLYKAL 198 AANA LK+LEEPP IL S + T+ SRCL + S E L+ + Sbjct: 107 EAANAFLKTLEEPPLNTTIILTSTRPMALFPTLLSRCLRVSVRNRPFEISPEERELWPEV 166 Query: 199 EQLKIMGWDSKRDFVKIAA 217 ++ D +R+ +K A Sbjct: 167 QKWLEPDSDPEREKLKKIA 185 >gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82] Length = 341 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G ++I++D D M A AL +++E F L + Sbjct: 97 IDVVRNKIKTFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACN 156 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L + + K L ++ Sbjct: 157 MSNKIIEPIQSRCAILRYAKLRDQEILKRLLEI 189 >gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA] gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei] Length = 329 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 18/158 (11%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++I++D D M A NA+ + +E + V F LI + I I+SRC S +F+ L Sbjct: 100 LKLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLK 159 Query: 191 EN-NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 E L KAL+ +K + V + G V I++ D +I++ Q Sbjct: 160 EEYMLNKALDI-------AKSENVNLTKNG-VESLIRVGRGDMRRILNCL--------QV 203 Query: 250 YALQKMQQIADE-LLSQDQKIAFDFLIEFILKEICKSA 286 +L + DE ++ I I+FIL+ + KS Sbjct: 204 VSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKST 241 >gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens] gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens] Length = 373 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F L Sbjct: 140 FKIIILDEADSMTHAAQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLP 199 Query: 191 ENNL 194 EN L Sbjct: 200 ENIL 203 >gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 112 VDEIRR-IRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R ++ F SL G ++++++D D M A NAL + +E FI+I + Sbjct: 85 IDAVRSSVKEFASLAVPNGKIPFKIVILDEADSMTSAAQNALRRIIETYSAVTRFIIICN 144 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I+ I SRC +F L + + L ++ Sbjct: 145 YVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKI 177 >gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator] Length = 351 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 112 VDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F N G ++I++D D M A AL +++E F L + Sbjct: 113 IDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 172 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE 199 + I+ I+SRC +++ L++ L K LE Sbjct: 173 NTEEIIEPIQSRCAMLRYGKLTDAQILAKVLE 204 >gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria] Length = 335 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL + +E+ + LI + I+ ++SRC +F LS Sbjct: 113 FKLVILDEADHMTQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLS 172 Query: 191 ENNLYKALE 199 + + LE Sbjct: 173 PDQMIPRLE 181 >gi|125579060|gb|EAZ20206.1| hypothetical protein OsJ_35804 [Oryza sativa Japonica Group] Length = 949 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 21/205 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + F P L G + + L C G++ LF G +G GK + +A + Sbjct: 279 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAAL--- 335 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + PC F K+ + +S + K +D + R++ Sbjct: 336 -----NCLSLEEQRPCG-FCKE---------CVILFSGRSRDVKELDAAKMDRLGRVKAL 380 Query: 122 L---SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L SL + ++V ++D + +A +A+LKSL+EP + ++I+I+ ++ T Sbjct: 381 LKSASLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSI 440 Query: 179 SRCLSIKFNSLSENNLYKALEQLKI 203 + C F + ++ LE++ I Sbjct: 441 THCQKFHFPKIKVADIVYRLERICI 465 >gi|323175253|gb|EFZ60866.1| DNA polymerase III subunit delta' [Escherichia coli LT-68] Length = 247 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%) Query: 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 + +D +R + L+ A G +V+ + + AANALLK+LEEPP + F L + Sbjct: 1 MGIDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 60 Query: 170 SPTILSTIRSRC 181 +L+T+RSRC Sbjct: 61 PERLLATLRSRC 72 >gi|108773789|ref|NP_853536.2| replication factor C subunit 3 isoform 2 [Homo sapiens] Length = 305 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|47209329|emb|CAF93464.1| unnamed protein product [Tetraodon nigroviridis] Length = 664 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----WRVIMIDPVDGMNRNAANALLK 152 +SLNPKTG+ R ++D R+ Y L ++A G + ++I+ D +N NA LK Sbjct: 287 FSLNPKTGEVRVASSIDYERKSMYELQISAKDGLGLGSYATLIIEITD-VNDNAPVIHLK 345 Query: 153 SLEEP-PQKV 161 SL P P+ V Sbjct: 346 SLTNPIPENV 355 >gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO] Length = 382 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL +++E F + S I+ ++SRC ++++ Sbjct: 165 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSK 224 Query: 189 LSENNLYKALEQL 201 LS+ ++ K L Q+ Sbjct: 225 LSDEDVLKRLLQI 237 >gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a] Length = 323 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL +++E F + S I+ ++SRC ++++ Sbjct: 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSK 165 Query: 189 LSENNLYKALEQL 201 LS+ ++ K L Q+ Sbjct: 166 LSDEDVLKRLLQI 178 >gi|312880077|ref|ZP_07739877.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] gi|310783368|gb|EFQ23766.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] Length = 258 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 +++ R + LSL T +R+ ++ D ++ AAN+LLK EEPP+ +L++ Sbjct: 82 IEQCRPLGGDLSLAPVTASFRLGVVFCADRLSLPAANSLLKVAEEPPEHGRLLLLAERD- 140 Query: 172 TILSTIRSRCLSIKFNSLSE 191 ++ T+RSR F++ E Sbjct: 141 ALIPTLRSRLTPFFFSAPEE 160 >gi|253744271|gb|EET00499.1| Replication factor C, subunit 5 [Giardia intestinalis ATCC 50581] Length = 373 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 14/166 (8%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM---CNPDPCSPFVKQMASHALHDFL 93 LL G +G G+ T Y V P M N D C + A H Sbjct: 36 LLVHGPRGSGRHTRILAYIRSVYGVQTLDYIPSTMLYETNTDTCEVNILSTACH------ 89 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 LNP V + + ++ S ++ ++V+++ D ++ A AL + Sbjct: 90 ---LELNPSEMGNHDVFIIQTV--LKETASTSSIGDKFKVVVLQDADKLSFTAQQALRRL 144 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +E+ IL++ + ++S I SRC I+ S+ + AL+ Sbjct: 145 MEQYAATCKLILVAESISGLISPIVSRCFCIRVPGFSDEEIVHALD 190 >gi|6324478|ref|NP_014547.1| Rfc4p [Saccharomyces cerevisiae S288c] gi|730503|sp|P40339|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication factor C4; AltName: Full=Activator 1 37 kDa subunit gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae] gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae] gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae] gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae] gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789] gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291] gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118] gi|285814797|tpg|DAA10690.1| TPA: Rfc4p [Saccharomyces cerevisiae S288c] gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13] gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23] Length = 323 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL +++E F + S I+ ++SRC ++++ Sbjct: 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSK 165 Query: 189 LSENNLYKALEQL 201 LS+ ++ K L Q+ Sbjct: 166 LSDEDVLKRLLQI 178 >gi|308159636|gb|EFO62161.1| Replication factor C, subunit 5 [Giardia lamblia P15] Length = 373 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 14/166 (8%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM---CNPDPCSPFVKQMASHALHDFL 93 LL G +G G+ T Y V P M N D C + A H Sbjct: 36 LLVHGPRGSGRHTRILAYIRSVYGVQTLDYIPSTMLYETNTDTCEVNILSTACH------ 89 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 LNP V + + ++ S ++ ++V+++ D ++ A AL + Sbjct: 90 ---LELNPSEMGNHDVFVIQTV--LKETASTSSIGDKFKVVVLQDADKLSFTAQQALRRL 144 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 +E+ IL++ + ++ I SRC I+ S+ + ALE Sbjct: 145 MEQYSATCKLILVTESISGLIPPIVSRCFCIRVPGFSDEEIVHALE 190 >gi|297274253|ref|XP_001102409.2| PREDICTED: replication factor C subunit 3 isoform 1 [Macaca mulatta] Length = 305 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB] Length = 323 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL +++E F + S I+ ++SRC ++++ Sbjct: 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSK 165 Query: 189 LSENNLYKALEQL 201 LS+ ++ K L Q+ Sbjct: 166 LSDEDVLKRLLQI 178 >gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102] Length = 357 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ LS+ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQI 202 >gi|153800909|ref|ZP_01955495.1| DNA polymerase III tau subunit [Vibrio cholerae MZO-3] gi|124123500|gb|EAY42243.1| DNA polymerase III tau subunit [Vibrio cholerae MZO-3] Length = 93 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 8 RKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG 67 Query: 64 FSKAPVRMC 72 + P C Sbjct: 68 ITATPCGQC 76 >gi|237752990|ref|ZP_04583470.1| DNA polymerase III subunit delta [Helicobacter winghamensis ATCC BAA-430] gi|229375257|gb|EEO25348.1| DNA polymerase III subunit delta [Helicobacter winghamensis ATCC BAA-430] Length = 211 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 N A NALLK LEEPP +F++ + +L TIRSR Sbjct: 67 NLYAQNALLKVLEEPPSGTIFVIYAKMKSLLLPTIRSR 104 >gi|293363864|ref|ZP_06610600.1| hypothetical protein MALL_0396 [Mycoplasma alligatoris A21JP2] gi|292552354|gb|EFF41128.1| hypothetical protein MALL_0396 [Mycoplasma alligatoris A21JP2] Length = 309 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 35/54 (64%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +++++I V+ + NA N++LK +EEP + L +L ++ +L T++SR + I Sbjct: 93 YKIVIIKNVELCSINAINSVLKIIEEPIKNTLILLSTNNVSRVLPTVKSRSMLI 146 >gi|258571379|ref|XP_002544493.1| activator 1 subunit 3 [Uncinocarpus reesii 1704] gi|237904763|gb|EEP79164.1| activator 1 subunit 3 [Uncinocarpus reesii 1704] Length = 293 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 10/141 (7%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++I++D D M A AL + +E+ F +I++ + + + SRC +F+ Sbjct: 46 GAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSP 105 Query: 189 LSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L E ++ + EQ++I D+ VK+ + G + RA+ +L C S + L Sbjct: 106 LKEQDIRVLVDHVIDKEQVRIHP-DAIDSLVKL-SKGDMRRALNVLQA-C-HASSIPLPL 161 Query: 243 IHIPRQEYALQKMQQIADELL 263 ++P+ + ++ + I DE + Sbjct: 162 RNVPKDQQPAREPEMITDETI 182 >gi|72072160|ref|XP_787339.1| PREDICTED: similar to replication factor C p37 subunit [Strongylocentrotus purpuratus] gi|115929579|ref|XP_001178763.1| PREDICTED: similar to replication factor C p37 subunit [Strongylocentrotus purpuratus] Length = 355 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 38/71 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 134 FKIIILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLS 193 Query: 191 ENNLYKALEQL 201 + K L ++ Sbjct: 194 KPIQGKKLREI 204 >gi|241950693|ref|XP_002418069.1| activator 1 40 kda subunit, putative; replication factor c subunit 5, putative; replication factor c5, putative [Candida dubliniensis CD36] gi|223641408|emb|CAX43368.1| activator 1 40 kda subunit, putative [Candida dubliniensis CD36] Length = 362 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H+ I K L SG H L++ G G GK T + + P Sbjct: 8 YRPRTLDQLTYHDSITKSLRALAKSGDFPHLLVY-GPSGSGKKTRIYCTLNEIF-GPQVE 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS----LNPK-TGKWRTVITVDEIRRIRY 120 K + + N FV +S+ +F LS S + P G V+ D ++ + Sbjct: 66 KLKIDVKN------FV--TSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVAS 117 Query: 121 -----FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 F + + +++++I+ D ++R+A AL +++E+ + IL+ ++ I++ Sbjct: 118 TEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIA 177 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL 201 I+SR L ++ S S +++ L + Sbjct: 178 PIKSRTLLVRIPSPSVDDINHILSHV 203 >gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS] Length = 352 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|242011379|ref|XP_002426428.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212510533|gb|EEB13690.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 355 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 8/195 (4%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H D K L G H L++ G G GK T L P Sbjct: 8 YRPSNLSKLDYHLDQAKQLKNLINKGDFPHLLVY-GTPGSGKKTRIMCLLKE-LYGPGAW 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK-TGKWRTVITVDEIRRIRYFLSL 124 K ++ C + +P K++ L ++ +NP G + V+ + +++ L Sbjct: 66 K--LKTCQMNFTTPSNKKIDIMTLSSNYHIE--VNPSDVGIYDRVVITELVKKTASTYQL 121 Query: 125 -TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++ ++++++ +D + +A +AL K++E IL ++ I+ I+SRCL Sbjct: 122 NSSKQKSFKILLLQGIDELTADAQHALRKTMENYNVTCRLILCGNSISNIIPAIKSRCLH 181 Query: 184 IKFNSLSENNLYKAL 198 I+ + S ++ K L Sbjct: 182 IRIPAPSYEDICKIL 196 >gi|41393079|ref|NP_958865.1| replication factor C subunit 3 [Danio rerio] gi|27503431|gb|AAH42327.1| Replication factor C (activator 1) 3 [Danio rerio] gi|182891582|gb|AAI64808.1| Rfc3 protein [Danio rerio] Length = 356 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 37/56 (66%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V+++ VD + ++A +AL +++E+ IL +++ +++ IRSRCL+++ Sbjct: 129 FKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRV 184 >gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895] gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895] Length = 349 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F L Sbjct: 131 YKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLD 190 Query: 191 ENNLYKALEQL 201 N LEQ+ Sbjct: 191 NVNALGRLEQI 201 >gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 424 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 21/196 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH DI ++++ R+ H LL+ G G GK + A + Sbjct: 76 YRPNSLEEVSGHHDIISTINRFIDKNRLPHLLLY-GPPGTGKTSTILALARRIYG----- 129 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 V M L ++ + +T + +I + Sbjct: 130 ---------------VNNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSE 174 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++I++D D M A AL + +E+ F +I++ + + + SRC + Sbjct: 175 STLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFR 234 Query: 186 FNSLSENNLYKALEQL 201 F+ L E ++ ++Q+ Sbjct: 235 FSPLKEEDIRVLVDQV 250 >gi|62733734|gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa Japonica Group] gi|77549593|gb|ABA92390.1| ATPase, AAA family protein [Oryza sativa Japonica Group] Length = 1121 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 31/210 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P L G + + L+ R+ A LF G +G GK + ++ + Sbjct: 337 LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAAL--- 393 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-----EIR 116 + V + PC A DF TG +I VD I Sbjct: 394 -----SCVAIGENKPCG------ACMECTDFF---------TGNGINLIEVDASNRKSIN 433 Query: 117 RIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 RIR+ + +A + ++V ++D ++ +A +K L+EP +V+FI I+ + Sbjct: 434 RIRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENL 493 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + SRC F+ + + ++ L ++ + Sbjct: 494 PRAVISRCQKYMFSKIKDIDIVCRLRKIAV 523 >gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f. nagariensis] gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f. nagariensis] Length = 335 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 96 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACN 155 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++++ +S+ ++ L Sbjct: 156 QSSKIIEPIQSRCAIVRYSRISDVDILSRL 185 >gi|67623441|ref|XP_668003.1| replication factor C subunit [Cryptosporidium hominis TU502] gi|54659176|gb|EAL37766.1| replication factor C subunit [Cryptosporidium hominis] Length = 290 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 W+++++D + M +A +AL + +E + F++I + I+ + SRC +F +S Sbjct: 71 WKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPIS 130 Query: 191 ENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 N+ + L+ Q + D + + + G + R I IL Sbjct: 131 ANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQ 173 >gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta] Length = 354 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 112 VDEIR-RIRYFLSLTAN--TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F N G ++I++D D M A AL +++E F L + Sbjct: 116 IDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 175 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE 199 + I+ I+SRC +++ L++ L K LE Sbjct: 176 NTEEIIEPIQSRCAMLRYGKLTDAQVLAKVLE 207 >gi|114649332|ref|XP_001143266.1| PREDICTED: replication factor C 3 isoform 3 [Pan troglodytes] Length = 305 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 IL +++ ++ IRSRCL+++ + S ++ L Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVL 196 >gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii str. 17XNL] gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii] Length = 344 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 18/157 (11%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M A NA+ + +E + V F LI + I I+SRC S +F+ L E Sbjct: 116 KLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKE 175 Query: 192 N-NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 L KAL+ +K + V + G V I++ D +I++ Q Sbjct: 176 EYMLNKALDI-------AKSENVNLTKNG-VESLIRVGRGDMRRILNCL--------QVV 219 Query: 251 ALQKMQQIADE-LLSQDQKIAFDFLIEFILKEICKSA 286 +L + DE ++ I I+FIL+ + KS Sbjct: 220 SLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKST 256 >gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102] gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102] Length = 361 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 114 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 173 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 174 QSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQI 206 >gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01] gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01] Length = 352 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQILKRLTQI 197 >gi|195472100|ref|XP_002088340.1| GE12972 [Drosophila yakuba] gi|194174441|gb|EDW88052.1| GE12972 [Drosophila yakuba] Length = 356 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + +E + L+ Sbjct: 155 YVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197 >gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 277 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 37/69 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A AL + +E Q F +I + I+ ++SRC +F LS Sbjct: 130 FKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLS 189 Query: 191 ENNLYKALE 199 + + LE Sbjct: 190 DESQRGRLE 198 >gi|314928456|gb|EFS92287.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL044PA1] Length = 773 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R +++ +ID + NALLK +EEPP V FI + Sbjct: 22 VDDARDLRERAFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPE 81 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKI 227 ++ TIRSR F + L + L L G D + + A GSV ++ + Sbjct: 82 KVIGTIRSRTHHYPFRLVPPKVLVEYLAGLCSKEGIDVDHAVLPLVVRAGGGSVRDSLSV 141 Query: 228 LHYDCDKIISSYID 241 L D+++ D Sbjct: 142 L----DQLLGGAAD 151 >gi|156230598|gb|AAI52282.1| Replication factor C (activator 1) 3 [Danio rerio] Length = 356 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 37/56 (66%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V+++ VD + ++A +AL +++E+ IL +++ +++ IRSRCL+++ Sbjct: 129 FKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRV 184 >gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium dendrobatidis JAM81] Length = 340 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 117 RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 RI+ F +T G +++++D D M A AL +++E F L + S I+ Sbjct: 103 RIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKII 162 Query: 175 STIRSRCLSIKFNSLSENNLYKAL 198 I+SRC +++ L++ L + L Sbjct: 163 EPIQSRCAILRYTRLTDLQLLRRL 186 >gi|154339736|ref|XP_001565825.1| replication factor C, subunit 4 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 360 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M A AL +++E F + S I+ I+SRC ++F LS+ Sbjct: 139 KIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQSRCAVVRFKKLSD 198 Query: 192 NNLYKAL 198 ++ K L Sbjct: 199 ADILKRL 205 >gi|313835781|gb|EFS73495.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA2] gi|314970150|gb|EFT14248.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA3] Length = 773 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 VD+ R +R +++ +ID + NALLK +EEPP V FI + Sbjct: 22 VDDARDLRERAFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPE 81 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKI---AAYGSVARAIKI 227 ++ TIRSR F + L + L L G D + + A GSV ++ + Sbjct: 82 KVIGTIRSRTHHYPFRLVPPKVLVEYLAGLCSKEGIDVDHAVLPLVVRAGGGSVRDSLSV 141 Query: 228 LHYDCDKIISSYID 241 L D+++ D Sbjct: 142 L----DQLLGGAAD 151 >gi|114649334|ref|XP_001143107.1| PREDICTED: replication factor C 3 isoform 1 [Pan troglodytes] Length = 294 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G V+ + ++ + L N+ ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 IL +++ ++ IRSRCL+++ + S Sbjct: 155 YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus helveticus H10] Length = 424 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 12/107 (11%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLS 190 V++ID + M +N + LL LE +L + + +P +I+ IRSRC +F +L+ Sbjct: 99 VLLIDEIHRMTKNLQDFLLPYLEN--GHILLVGATTENPIMSIVPAIRSRCQIFEFKALN 156 Query: 191 ENNLYKAL-----EQLKIMGWDSKRDFVK---IAAYGSVARAIKILH 229 + N+ L E LK+ + + D +K IAA G + A+ IL Sbjct: 157 DQNIEIVLKRAVTEVLKLKKEEIESDALKLIAIAADGDLRVALNILE 203 >gi|322794004|gb|EFZ17242.1| hypothetical protein SINV_07523 [Solenopsis invicta] Length = 353 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/88 (22%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 +NP G + ++ ++ I+ + + ++V+++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGIYDRIVVMELIKATAQTHHIDISQKEFKVVLLSNVDQLTKDAQHALRRTMEKY 154 Query: 158 PQKVLFILISHASPTILSTIRSRCLSIK 185 IL ++++ +L IRSRC+ I+ Sbjct: 155 ISTCRLILCANSTSRVLPAIRSRCVRIR 182 >gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+] gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+] Length = 357 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 112 IDVVRQRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 171 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 172 QSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQI 204 >gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1] Length = 354 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPVGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQI 202 >gi|222480925|ref|YP_002567162.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453827|gb|ACM58092.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 349 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/102 (20%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 +G ++ +++D + + + AL + +E+ + F++ + +++ IRSRC ++ Sbjct: 117 SGEYKTVLLDNAEAIREDFQQALRRVMEQHHRTTQFVIATRQPSKLIAPIRSRCFPVRVR 176 Query: 188 SLSENNLYKALEQL---KIMGWDSKR-DFVKIAAYGSVARAI 225 + + + LE + + + +D +FV AA G + +AI Sbjct: 177 APTTDETIDVLETICEREGVDYDGNGLEFVASAAGGDLRKAI 218 >gi|68472826|ref|XP_719478.1| hypothetical protein CaO19.2029 [Candida albicans SC5314] gi|46441297|gb|EAL00595.1| hypothetical protein CaO19.2029 [Candida albicans SC5314] Length = 362 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 26/224 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H+ I L SG H L++ G G GK T + + P Sbjct: 8 YRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVY-GPSGSGKKTRIYCTLNEIF-GPQVE 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS----LNPK-TGKWRTVITVDEIRRIRY 120 K + + N FV +S+ +F LS S + P G V+ D ++ + Sbjct: 66 KLKIDVKN------FV--TSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVAS 117 Query: 121 -----FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 F + + +++++I+ D ++R+A AL +++E+ + IL+ ++ I++ Sbjct: 118 TEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIA 177 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 I+SR L ++ S S +N+ I+G ++++ +K + + Sbjct: 178 PIKSRTLLVRIPSPSVDNIN------HILGHVAEKESLKFSTHN 215 >gi|194383204|dbj|BAG59158.1| unnamed protein product [Homo sapiens] Length = 305 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 41/68 (60%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL+++ + S Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 Query: 191 ENNLYKAL 198 ++ L Sbjct: 189 IEDICHVL 196 >gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18] Length = 352 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQILKRLTQI 197 >gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767] gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii] Length = 343 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 43/223 (19%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 ++G +DI + ++ G++ H LLF G G GK + A + Sbjct: 37 VYGQQDIVDTVRKFVHEGKLPH-LLFYGPPGTGKTSTIIALAREIY-------------- 81 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS-LTANTGYW 131 P K M LN + +D +R +I+ F S + + + Sbjct: 82 ----GPNYKNMV-----------LELNASDDRG-----IDVVRNQIKNFASTMQIFSKGF 121 Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++I++D D M A N+L + +E+ + F ++++ S + + SRC +F + E Sbjct: 122 KLIILDEADAMTSVAQNSLRRIIEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGE 181 Query: 192 NNLYKALEQLKI-----MGWDSKRDFVKIAAYGSVARAIKILH 229 + + + L+ + I + ++++ +K++ G + RA+ +L Sbjct: 182 SAIQERLKNVIIKENLSINEEAEKTLLKLSN-GDMRRALNVLQ 223 >gi|194861801|ref|XP_001969859.1| GG10322 [Drosophila erecta] gi|190661726|gb|EDV58918.1| GG10322 [Drosophila erecta] Length = 356 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + +E + L+ Sbjct: 155 YVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197 >gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii] gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii] Length = 321 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 42/189 (22%) Query: 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 G+E+ L Q G M H L+ G GIGK T H L +S+ + + Sbjct: 25 VGNEETIHRLQQIAKDGNMPH-LIISGLPGIGKTT-SIHCLAHELLGDSYSQGVLELNAS 82 Query: 75 DP-----CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 D +KQ A H L P G Sbjct: 83 DDRGIDVVRNQIKQFAQKKCH--------LEP---------------------------G 107 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++I++D D M A AL +++E F + S I+ ++SRC ++++ L Sbjct: 108 KHKIIILDEADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKL 167 Query: 190 SENNLYKAL 198 S+ + K L Sbjct: 168 SDEQVLKRL 176 >gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97] Length = 352 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892] gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892] Length = 352 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3] gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC 18188] Length = 354 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQVLKRLTQI 197 >gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88] Length = 443 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/196 (19%), Positives = 78/196 (39%), Gaps = 21/196 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH DI ++++ R+ H LL+ G G GK + A + Sbjct: 51 YRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLY-GPPGTGKTSTILALARRIYG----- 104 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 VK M L ++ + +T + +I + Sbjct: 105 ---------------VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSE 149 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + G +++I++D D M A AL + +E+ F +I++ + + + SRC + Sbjct: 150 STLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFR 209 Query: 186 FNSLSENNLYKALEQL 201 F+ L E ++ ++Q+ Sbjct: 210 FSPLKEEDIRVLVDQV 225 >gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS 112818] Length = 352 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 354 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQI 202 >gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054] gi|149388978|gb|EAZ62975.2| DNA replication factor C [Pichia stipitis CBS 6054] Length = 325 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYF--LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F + G ++I++D D M A AL +++E F + Sbjct: 89 IDVVRNRIKQFAQTKIKLPPGRHKIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACN 148 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ ++SRC +++N L+++ + L Sbjct: 149 QSSKIIEPLQSRCAILRYNKLADDQVLTRL 178 >gi|73544229|ref|XP_848009.1| replication factor C, subunit 4 [Leishmania major strain Friedlin] gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain Friedlin] Length = 360 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M A AL +++E F + S I+ I+SRC ++F LS+ Sbjct: 139 KIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLSD 198 Query: 192 NNLYKAL 198 ++ K L Sbjct: 199 ADILKRL 205 >gi|19921136|ref|NP_609494.1| replication factor C 38kD subunit [Drosophila melanogaster] gi|22946236|gb|AAF53076.2| replication factor C 38kD subunit [Drosophila melanogaster] gi|220942726|gb|ACL83906.1| RfC38-PA [synthetic construct] gi|220952880|gb|ACL88983.1| RfC38-PA [synthetic construct] Length = 356 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + +E + L+ Sbjct: 155 YVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197 >gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893] gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893] Length = 354 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii] Length = 288 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F L+ Sbjct: 141 YKIIILDEADSMTGAAQAALRRTMEKETKTTRFCLICNYVSRIIGPLTSRCAKFRFKPLA 200 Query: 191 ENNLYKALEQL 201 + L L+ + Sbjct: 201 TSILLTRLKGI 211 >gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces stipitatus ATCC 10500] gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces stipitatus ATCC 10500] Length = 399 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/186 (19%), Positives = 77/186 (41%), Gaps = 21/186 (11%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK T A + Sbjct: 61 GHQDILATINRFIDSHRLPHLLLY-GPPGTGKTTTILALARRIYG--------------- 104 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 +K M L ++ + +T + +I + + + G +++I+ Sbjct: 105 -----IKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLII 159 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L E ++ Sbjct: 160 LDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIR 219 Query: 196 KALEQL 201 ++++ Sbjct: 220 SLVDKV 225 >gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus] Length = 370 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ K + VKI +A +KI D K I+ Sbjct: 204 DK-----IQQERLLDIAEKEN-VKIGNE-EIAYLVKISEGDLRKAIT 243 >gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 393 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 28/219 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ S R+ H LL+ G G GK + A + N + + + + D Sbjct: 59 GHKDIIATINKFVDSNRLPHLLLY-GPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 V + + ++ P+ G ++ +++I+ Sbjct: 118 DRGIDVVREQIKTFSSTKQI-FAAAPRAGD--------------------SSLATFKLII 156 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 +D D M A AL + +E+ F +I++ + + + SRC +F+ L + ++ Sbjct: 157 LDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIR 216 Query: 196 ----KALEQLKI-MGWDSKRDFVKIAAYGSVARAIKILH 229 K +E K+ + D+ V + + G + RA+ +L Sbjct: 217 NLVDKVIEDEKVNITQDATGSLVTL-SKGDMRRALNVLQ 254 >gi|154277188|ref|XP_001539435.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1] gi|150413020|gb|EDN08403.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1] Length = 366 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 115 IRRIRYFLSLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 I RY LS + +T G +++I++D D M A AL + +E+ F +I++ + + Sbjct: 153 IHPFRYSLSNSESTLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKL 212 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + SRC +F+ L E ++ ++Q+ Sbjct: 213 SPALLSRCTRFRFSPLKEEDIRVLVDQV 240 >gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis] Length = 314 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL + +E F L+ + S I+ I+SRC ++FN Sbjct: 100 GSHKLVLLDEADSMTPAAQQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNR 159 Query: 189 LSENNLYKAL 198 L + + L Sbjct: 160 LKDTEILDRL 169 >gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 360 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M A AL +++E F + S I+ I+SRC ++F LS+ Sbjct: 139 KIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQSRCAVVRFKKLSD 198 Query: 192 NNLYKAL 198 ++ K L Sbjct: 199 ADILKRL 205 >gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R] gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R] Length = 332 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 100 IDVVRNKIKAFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACN 159 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ I+SRC +++ L + + K L ++ Sbjct: 160 MSNKIIEPIQSRCAILRYAKLRDTEILKRLLEI 192 >gi|296412902|ref|XP_002836158.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629965|emb|CAZ80349.1| unnamed protein product [Tuber melanosporum] Length = 351 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 44/71 (61%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++V++I+ D + R+A AL +++E+ + ILI++++ I++ I+SR L I+ + + Sbjct: 128 FKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILIANSTANIIAPIKSRTLLIRVAAPT 187 Query: 191 ENNLYKALEQL 201 + + L+ + Sbjct: 188 IDEMVGVLKHV 198 >gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480] gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480] Length = 352 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC ++++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQI 197 >gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus] gi|81916548|sp|Q99J62|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName: Full=Activator 1 subunit 4 gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus] gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus] gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus] Length = 364 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ K + VKI +A +KI D K I+ Sbjct: 204 DK-----IQQERLLDIAEKEN-VKIGNE-EIAYLVKISEGDLRKAIT 243 >gi|6644334|gb|AAF21015.1|AF208499_1 replication factor C subunit 2 [Rattus norvegicus] Length = 216 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE--- 191 ++D D M A AL +++E + F L +AS I+ I+SRC +++ L++ Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60 Query: 192 -NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + L +E+ K+ D + + A G + +A+ L Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 99 >gi|269792628|ref|YP_003317532.1| hypothetical protein Taci_1018 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100263|gb|ACZ19250.1| hypothetical protein Taci_1018 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 236 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 ++E R + LS+ +RV +I D ++ AAN+LLK EEPP + +L++ Sbjct: 72 IEECRALALELSMVPVRRTFRVGVILSADRLSLPAANSLLKLTEEPPPRAKMVLLAERD- 130 Query: 172 TILSTIRSR 180 ++ T+RSR Sbjct: 131 NLIPTLRSR 139 >gi|294495084|ref|YP_003541577.1| replication factor C large subunit [Methanohalophilus mahii DSM 5219] gi|292666083|gb|ADE35932.1| replication factor C large subunit [Methanohalophilus mahii DSM 5219] Length = 489 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 6/74 (8%) Query: 132 RVIMIDPVDGM----NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 R+I++D D M +R A+ +++ Q + ILI++ + ST+RS C++IKFN Sbjct: 104 RLIILDEADNMHGSADRGGTRAITNVIKKSNQPI--ILIANDLYALSSTLRSHCVNIKFN 161 Query: 188 SLSENNLYKALEQL 201 + + ++ AL+++ Sbjct: 162 PIPQRSILPALKKI 175 >gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10] gi|150848005|gb|EDN23198.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10] Length = 355 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYARLTDQQVVKRLLQI 202 >gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803] gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803] Length = 351 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 30/176 (17%) Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP--DPCSPFVKQMASH 87 SG M H LL+ G G GK TL H P F +A V N D V++ Sbjct: 33 SGNMPHMLLY-GPAGTGKTTL-IHAMMHEFFGPRFWRARVSEFNASTDRGIKIVRERIKS 90 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITV--DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 RTVI V D+++ + ++VI++D D + R Sbjct: 91 IA-----------------RTVIAVAPDDVKAV-------YPCPDFQVIILDEADALTRE 126 Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + AL + +E+ + F +I + I++ I SRC F+SL + LE + Sbjct: 127 SQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLESI 182 >gi|289617692|emb|CBI61415.1| unnamed protein product [Sordaria macrospora] Length = 357 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 116 RRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +RI+ F +T G +++++D D M A AL +++E F + S I Sbjct: 115 QRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKI 174 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + ++SRC +++ L++ + K L Q+ Sbjct: 175 IEPLQSRCAILRYAKLTDAQVVKRLLQI 202 >gi|119903037|ref|XP_869859.2| PREDICTED: spatacsin isoform 2 [Bos taurus] gi|297480015|ref|XP_002691138.1| PREDICTED: spastic paraplegia 11 (autosomal recessive) [Bos taurus] gi|296482919|gb|DAA25034.1| spastic paraplegia 11 (autosomal recessive) [Bos taurus] Length = 2499 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 W+ +DE + + + W + ++ V ANA+L + + P + F + Sbjct: 712 WKLTDAIDEYD-VNENVPKVKESNIWEKLSVEEV------IANAILNN-KIPEAQTFFRI 763 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAY 218 SH++ + IR L + F+SL +NN+ +A E LK MG++ K +KI Y Sbjct: 764 NSHSAQRLEELIRIG-LDLVFDSLKKNNMEEASELLKNMGFNVKDQLLKICFY 815 >gi|28317156|gb|AAD46852.2|AF160912_1 LD06837p [Drosophila melanogaster] Length = 395 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 134 VNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 193 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + +E + L+ Sbjct: 194 YVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 236 >gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus] Length = 364 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ K + + I+ G +A +K+ D K I+ Sbjct: 204 DK-----IQQQRLLDIAEKENVI-ISNEG-IAYLVKVSEGDLRKAIT 243 >gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae] gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae] Length = 364 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A +L +++E+ + F LI + I+ + SRC +F LS Sbjct: 143 FKIVILDEADSMTNPAQASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLS 202 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + L K L E K+ D + + G + +AI L Sbjct: 203 SDILQKRLRHIAEAEKVNAEDKAITALIDTSEGDLRKAITYLQ 245 >gi|146094540|ref|XP_001467307.1| replication factor C, subunit 4 [Leishmania infantum JPCM5] gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum JPCM5] Length = 360 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M A AL +++E F + S I+ I+SRC ++F LS+ Sbjct: 139 KIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLSD 198 Query: 192 NNLYKAL 198 ++ K L Sbjct: 199 ADILKRL 205 >gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus yFS275] gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus yFS275] Length = 340 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 117 RIRYFLSLTANT---GY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 +++ F + N GY ++++++D D M ++A AL +++E + F L+ + Sbjct: 104 KVKNFARIAVNNTVNGYPCPPFKIVILDEADSMTQDAQAALRRTMEATARITRFCLVCNY 163 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ + SRC +F L ++ K LE Sbjct: 164 VTRIIDPLASRCSKYRFKPLDAQDIAKRLE 193 >gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM 639] gi|73914011|sp|Q4JAB0|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639] Length = 325 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 42/200 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++ D + NQ+ +I + L ++ M H LLF G G GK T Sbjct: 14 KSLDEIVNQK-----EIVERLKKFVKEKNMPH-LLFAGPPGTGKTTAAL----------- 56 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL 122 A VR L+ Y Y L R + D IR +++ F Sbjct: 57 ---ALVR-----------------DLYGNNYRQYFLELNASDERGI---DVIRNKVKEFA 93 Query: 123 -SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +N ++VI++D D M +A AL +++E + FIL + I+ I+SR Sbjct: 94 RTVASNNVPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRT 153 Query: 182 LSIKFNSLSENNLYKALEQL 201 +F L + ++ L Q+ Sbjct: 154 ALFRFYPLKKEDVVNRLIQI 173 >gi|83032953|ref|XP_729265.1| replication factor C subunit 4 [Plasmodium yoelii yoelii str. 17XNL] gi|23486553|gb|EAA20830.1| replication factor C subunit 4 [Plasmodium yoelii yoelii] Length = 358 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 12/158 (7%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D VD M A +L + +E F L + S I+ ++SRC I++ Sbjct: 127 GRHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 186 Query: 189 LSENNLYKALEQLKIMGW------DSKRDFVKIAAYGSVARAIKILH--YDCDKIIS--S 238 L+++ + K + LKI + D + + A G + +A+ L Y ++I+ + Sbjct: 187 LTDDQVLKRI--LKICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYAGLEVINKEN 244 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +++ IP E ++ + IA+D + E Sbjct: 245 VLNICDIPSPERIENLLKHCISSEWRKAHDIAYDMIKE 282 >gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 356 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 116 RRIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 +RI+ F +T G +++++D D M A AL +++E F + S I Sbjct: 114 QRIKGFAQKKVTLPQGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKI 173 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQL 201 + ++SRC +++ L++ + K L Q+ Sbjct: 174 IEPLQSRCAILRYAKLTDAQVVKRLLQI 201 >gi|308321967|gb|ADO28121.1| replication factor c subunit 3 [Ictalurus furcatus] Length = 356 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 36/56 (64%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V+++ D + ++A +AL +++E+ IL +++ ++S IRSRCL+++ Sbjct: 129 FKVVLLTEADRLTKDAQHALRRTMEKYMGTCRLILCCNSTSKVISPIRSRCLAVRV 184 >gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str. Silveira] Length = 393 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F SL Sbjct: 148 FKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLD 207 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 208 GSAAGTRLEEI 218 >gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 350 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 10/93 (10%) Query: 117 RIRYFLSLTANTGY----------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +I++F SLT G +++I++D D + +A AL + +E + FILI Sbjct: 100 KIKHFASLTVAKGNNDMENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILI 159 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 + ++ + SRC +F SL +++ LE Sbjct: 160 CNYVTRVIEPLASRCAKFRFQSLPPSSMKARLE 192 >gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001] Length = 361 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 114 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 173 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 174 QSNKIIEPLQSRCAILRYARLTDEQVVKRLLQI 206 >gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01] gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01] Length = 404 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 21/196 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + GH D+ ++ + S R+ H LL+ G G GK + A + Sbjct: 51 YRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLY-GPPGTGKTSTILALARRIYG----- 104 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K M L ++ + +T + +I + Sbjct: 105 ---------------AKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSE 149 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ G +++I++D D M A AL + +E+ F +I++ + + + SRC + Sbjct: 150 SSLGAFKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFR 209 Query: 186 FNSLSENNLYKALEQL 201 F+ L E ++ + Q+ Sbjct: 210 FSPLKEKDIRALVNQV 225 >gi|94994607|ref|YP_602705.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10750] gi|94548115|gb|ABF38161.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10750] Length = 433 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 ++ A NALLK+LEEP + V+FIL + I +TI SR +F ++ + Sbjct: 7 LSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 56 >gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO] Length = 353 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLEXILDISAGDLRRGITLLQ 236 >gi|289581537|ref|YP_003480003.1| Replication factor C [Natrialba magadii ATCC 43099] gi|289531090|gb|ADD05441.1| Replication factor C [Natrialba magadii ATCC 43099] Length = 334 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 10/165 (6%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 LL +G G GK A +PD + + + F + + +D + Sbjct: 36 LLLQGPPGSGKTAAARALAREAHADPDNDLIEINVAD------FFGRTKTEIKNDPRFAQ 89 Query: 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 + + + R +I ++ S + +G ++ I++D + + + AL + +E+ Sbjct: 90 FLVGRSSMSKRDMIN----HVLKESASYASVSGEYKTILLDNAEDVREDFQQALRRIMEQ 145 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + FI+ + ++ IRSRC + F S S LE++ Sbjct: 146 HHRTTQFIIATRQPTKLIPPIRSRCFPVSFRSPSSAETVAVLERI 190 >gi|57168180|ref|ZP_00367319.1| DNA polymerase III delta prime subunit (holB) [Campylobacter coli RM2228] gi|305431675|ref|ZP_07400844.1| DNA polymerase III [Campylobacter coli JV20] gi|57020554|gb|EAL57223.1| DNA polymerase III delta prime subunit (holB) [Campylobacter coli RM2228] gi|304445270|gb|EFM37914.1| DNA polymerase III [Campylobacter coli JV20] Length = 203 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 A N LLK LEEPP+ + F+++ + +L TI+SR + K N + N Sbjct: 72 AQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLICEKRNKIKAKN 119 >gi|318904079|ref|NP_001187655.1| replication factor C subunit 3 [Ictalurus punctatus] gi|308323615|gb|ADO28943.1| replication factor c subunit 3 [Ictalurus punctatus] Length = 356 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 36/56 (64%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V+++ VD + ++A + L +++E+ IL +++ ++S IRSRCL+++ Sbjct: 129 FKVVLLTEVDRLTKDAQHVLRRTMEKYMGTCRLILCCNSTSKVISPIRSRCLAVRV 184 >gi|210616888|ref|ZP_03291269.1| hypothetical protein CLONEX_03490 [Clostridium nexile DSM 1787] gi|210149593|gb|EEA80602.1| hypothetical protein CLONEX_03490 [Clostridium nexile DSM 1787] Length = 301 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++ G +V +I + N LLK LE+ +K I I++ ++L TI SRC I+ Sbjct: 86 SSVGDRKVCLIHNASSITNITQNKLLKILEDRSEKNTLIFITNRM-SMLPTILSRCFFIQ 144 Query: 186 FNSLSENNLYKALEQLKIMG--WDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 F ++++ + L++ I WD + + A Y + + + Y I+ +L Sbjct: 145 FRPVNDHTMRLCLKEQAIEEKYWDFLQYLLVNAPYHLIEKKESLYDY-----INISEELS 199 Query: 244 HIPRQEYALQKMQQIADELLSQDQKIAFD 272 HI ++E L+K+ L+ +D FD Sbjct: 200 HISKKEEFLEKLHL----LIEKDPNSFFD 224 >gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus clavatus NRRL 1] gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus clavatus NRRL 1] Length = 352 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + + L+Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQVVQRLKQI 197 >gi|195340081|ref|XP_002036645.1| GM11127 [Drosophila sechellia] gi|194130525|gb|EDW52568.1| GM11127 [Drosophila sechellia] Length = 351 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + + +D I+++ + + ++VI+I D + ++A +AL +++E+ Sbjct: 95 VNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE 199 I+ +++ I+ IRSRCL I+ + +E + L+ Sbjct: 155 YVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197 >gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980] gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 333 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 110 IDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACN 169 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 170 QSNKIIEPLQSRCAILRYARLTDAQVVKRLLQI 202 >gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS] gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735 delta SOWgp] gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735 delta SOWgp] Length = 393 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F SL Sbjct: 148 FKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLD 207 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 208 GSAAGTRLEEI 218 >gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga] gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva] Length = 324 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 112 VDEIRR-IRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VD +R I+ F SL +++++D VD M A AL + +E F L + Sbjct: 83 VDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPAQQALRRIMELYSSTTRFALACN 142 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARA 224 S I+ I+SRC I+++ L + + K L + M D + + +A G + RA Sbjct: 143 QSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDMENLTYTDEGMEALLFSADGDLRRA 202 Query: 225 IKILH 229 + L Sbjct: 203 VNNLQ 207 >gi|194206702|ref|XP_001918246.1| PREDICTED: similar to Spatacsin (Spastic paraplegia 11 protein) (Colorectal carcinoma-associated protein) [Equus caballus] Length = 2507 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 NA+L + + P + F + SH++ + IR L + F+SL +NN+ +A E LK MG+ Sbjct: 755 TNAVLNN-KIPEAQTFFRINSHSAQRLEELIRIG-LDLVFDSLKKNNIKEASELLKNMGF 812 Query: 207 DSKRDFVKIAAYGS 220 D K +KI Y + Sbjct: 813 DVKDQLLKICFYTT 826 >gi|327398214|ref|YP_004339083.1| DNA polymerase III subunit delta' HolB [Hippea maritima DSM 10411] gi|327180843|gb|AEA33024.1| DNA polymerase III delta prime subunit HolB [Hippea maritima DSM 10411] Length = 191 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 17/101 (16%) Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE--NNLYKALEQLK 202 +A NA+LK +EEPP FI + +L TI SRC I+ N + + L LE + Sbjct: 69 DAQNAILKLIEEPPPLNWFIF--YEPTNLLDTIYSRCQVIRLNRETSYLDGLEMVLENKE 126 Query: 203 -----IMGWDSKRDFVK--------IAAYGSVARAIKILHY 230 + G + K D +K + G V +A K+ Y Sbjct: 127 ALLEYLFGLNQKEDIIKGIEVLCRILIKKGRVEQAEKLFEY 167 >gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 402 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 25/181 (13%) Query: 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 K L + +G + H +LF G G GK + A L P+ K+ V N Sbjct: 57 KVLKKQISTGNLPH-MLFYGPPGTGKTSTILALAKQ-LYGPNLYKSRVLELNASDERGI- 113 Query: 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG 141 + + +F L+ S NP T D++R +++I++D D Sbjct: 114 -SIVRQKIKNFAKLTVS-NP---------TEDDLRNYP--------CPPYKIIILDEADS 154 Query: 142 MNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 M +A +AL +++E F L+ + I+ + SRC +F L+ N +L +L Sbjct: 155 MTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNEN---SLNRL 211 Query: 202 K 202 K Sbjct: 212 K 212 >gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] Length = 391 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 17/141 (12%) Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 Y YSLN T +++R I L NT +I ID V +N+ LL Sbjct: 64 YPFYSLN------ATSFKSEDLRNI---LKQHQNTLQKPLIFIDEVHRLNKAQQELLLPI 114 Query: 154 LEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRD 211 +E + L + S +P ++++ IRSR +F+ L++ L + LE+ + DS +D Sbjct: 115 MEN--HQALILGASMENPFFSLINAIRSRSFVFEFHRLNKEELAQILEEYSLE--DSIKD 170 Query: 212 FVKIAAYGSVARAIKILHYDC 232 F+ I G ARA+ L DC Sbjct: 171 FL-IGTSGGDARAMLNL-LDC 189 >gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon] gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon] Length = 322 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I +D D + A +AL +++E FIL + S I+ I+SRC +F SLS Sbjct: 103 FKIIFLDEADALTDAAQSALRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLS 162 >gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga] gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva] Length = 347 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 90/246 (36%), Gaps = 63/246 (25%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + HEDI L + G++ H LLF G G GK + Sbjct: 13 YRPETLQDIISHEDIMSTLMIFAEKGQLPH-LLFHGPPGSGKTSTIL------------- 58 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLS----YSLNPKTGKWRTVITVDEIRRIRYF 121 A+ +LY S + L R + TV + +I+ F Sbjct: 59 ----------------------AISRYLYGSQRNGFVLELNASDERGIDTVRD--QIKAF 94 Query: 122 LSLTANT------------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 S T+NT ++I++D D M A NAL + +E V F LI + Sbjct: 95 -SETSNTFTSTMPVDDPPRTNLKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICNF 153 Query: 170 SPTILSTIRSRCLSIKFNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVAR 223 I+ I+SRC +F L + + + LE +KI D D + G + R Sbjct: 154 MNKIIPPIQSRCTGFRFQPLKSDVVRERIREIAKLENVKIT--DCALDALVEIGQGDMRR 211 Query: 224 AIKILH 229 + L Sbjct: 212 VLNCLQ 217 >gi|301769427|ref|XP_002920131.1| PREDICTED: replication factor C subunit 2-like isoform 2 [Ailuropoda melanoleuca] Length = 318 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN----LY 195 D M A AL +++E + F L +AS I+ I+SRC +++ LS+ L Sbjct: 108 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLL 167 Query: 196 KALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 LEQ K+ D + V A G + +A+ Sbjct: 168 TVLEQEKVPYTDDGLEAVIFTAQGDMRQAL 197 >gi|126179181|ref|YP_001047146.1| replication factor C small subunit 2 [Methanoculleus marisnigri JR1] gi|125861975|gb|ABN57164.1| Replication factor C [Methanoculleus marisnigri JR1] Length = 336 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 29/287 (10%) Query: 6 FDPVYNQR----LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + VY R + G +++ + L+ + SG + H +L G G GK T L Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPH-MLISGPHGTGK-TAAVECLAKRLYG 60 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ D + + +Y K R++I V+ + ++++ Sbjct: 61 ENWKANTTVFSATDLLGRGRSALETDERFSMIYR---------KDRSLI-VNFKQIVKWY 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S+ +++++ + G+ A AL +++E FI ++ I+ I SRC Sbjct: 111 ASMRPLDADFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKR------DFVKIAAYGSVARAIKILHYDCDKI 235 L + F + + + LE+ I+ + D + AA G + RAI L Sbjct: 171 LPLFFAPVESSLVLTRLEE--ILAAEGAAVPADDIDLIVYAAQGDLRRAIMYLQIAARA- 227 Query: 236 ISSYIDLIHIPRQE---YALQKMQQIADELLSQDQKIAFDFLIEFIL 279 DL I R E A + D ++IA +IE+ L Sbjct: 228 -EQEFDLAEISRSETTNVATSAFVALRDGNFDAARRIAESLMIEYGL 273 >gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans] gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans] Length = 322 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 32/185 (17%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E+ L Q G M H L+ G GIGK T H L +S+A + + Sbjct: 24 IVGNEETITRLQQIAQDGNMPH-LIISGLPGIGKTT-SVSCLAHELLGNAYSQAVLELNA 81 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D V + + F SL P G ++ Sbjct: 82 SDDRGIDV---VRNQIKQFAQKKCSLPP---------------------------GRHKI 111 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++D D M A AL +++E F + S I+ ++SRC ++++ L ++ Sbjct: 112 VILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQ 171 Query: 194 LYKAL 198 + + L Sbjct: 172 VLRRL 176 >gi|221053736|ref|XP_002258242.1| replication factor c subunit [Plasmodium knowlesi strain H] gi|193808075|emb|CAQ38779.1| replication factor c subunit, putative [Plasmodium knowlesi strain H] Length = 339 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D VD M A +L + +E F L + S I+ ++SRC I++ Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172 Query: 189 LSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 LS++ + K + E I D + + A G + +A+ L Sbjct: 173 LSDDQVLKRIVKICEMENIKYTDDGLETLTFIADGDLRKAVNCLQ 217 >gi|19112438|ref|NP_595646.1| DNA replication factor C complex subunit Rfc5 (predicted) [Schizosaccharomyces pombe 972h-] gi|30913232|sp|O94697|RFC5_SCHPO RecName: Full=Replication factor C subunit 5; Short=Replication factor C5 gi|4455787|emb|CAB36876.1| DNA replication factor C complex subunit Rfc5 (predicted) [Schizosaccharomyces pombe] Length = 358 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 36/55 (65%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++V++I+ D + R+A AL +++E+ + ILI++++ I+ IRSR L ++ Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVR 182 >gi|114649330|ref|XP_001143187.1| PREDICTED: replication factor C 3 isoform 2 [Pan troglodytes] Length = 343 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 37/59 (62%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +V+++ VD + ++A +AL +++E+ IL +++ ++ IRSRCL+++ + S Sbjct: 130 KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188 >gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624] gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624] Length = 319 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F +L Sbjct: 77 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 136 Query: 191 ENNLYKALEQL 201 + + LE + Sbjct: 137 NSAAGERLEHI 147 >gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB] Length = 348 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 >gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis] Length = 357 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++++D D M + A AL +++E + F LI + I+ I SRC +F L+ Sbjct: 139 LKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLT 198 >gi|156095817|ref|XP_001613943.1| replication factor C subunit 4 [Plasmodium vivax SaI-1] gi|148802817|gb|EDL44216.1| replication factor C subunit 4, putative [Plasmodium vivax] Length = 336 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 44/281 (15%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Y + G+ + L SG M + LL G G GK T A +L Sbjct: 22 YRPEYLDDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTTSILCLASEML------ 74 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-- 123 + A L L+ S + R RI+ F Sbjct: 75 -------------------GAQAKKAVLELNASDDRGINVIRD--------RIKSFAKEI 107 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++ G ++I++D VD M A +L + +E F L + S I+ ++SRC Sbjct: 108 ISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAI 167 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH--YDCDKIIS 237 I++ LS++ + K + ++ I D + + A G + +A+ L Y ++I+ Sbjct: 168 IRYFKLSDDQVLKRIVKICQLENIKYTDDGLETLTFIADGDLRKAVNCLQSTYAGLEVIN 227 Query: 238 --SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + +++ IP E ++ + + IA+D + E Sbjct: 228 KENVLNICDIPSPERIENLLKFCINSEWKKAHDIAYDMIRE 268 >gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii] Length = 332 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL +++E + F+ I + I+ + SRC +F L Sbjct: 109 YKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQ 168 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + +E + + D + + G + RAI L ++ + ++D + Sbjct: 169 PAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQ-SAARLGAGHVDRATL- 226 Query: 247 RQEYALQKMQQIADELLS 264 L Q+A E++S Sbjct: 227 -----LDVSGQVAPEVVS 239 >gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] Length = 346 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Query: 117 RIRYFLSLTANTGY--------WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +I++F SL +T +++I++D D + R+A AL + +E + FILI + Sbjct: 99 KIKHFASLAIDTETTKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFILICN 158 Query: 169 ASPTILSTIRSRCLSIKFNSL 189 I+ + SRC +F L Sbjct: 159 YVTRIIEPLASRCAKFRFQPL 179 >gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255] Length = 352 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 105 IDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTAGAQQALRRTMEIYSSTTRFAFACN 164 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 165 QSNKIIEPLQSRCAILRYARLTDAQVVKRLMQI 197 >gi|322368159|ref|ZP_08042728.1| replication factor C small subunit 2 [Haladaptatus paucihalophilus DX253] gi|320552175|gb|EFW93820.1| replication factor C small subunit 2 [Haladaptatus paucihalophilus DX253] Length = 349 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ + +TG ++ I++D + + + AL + +E+ + F++I+ ++ I Sbjct: 124 LKEYAGYAPSTGSYKTIVLDNAESIREDFQQALRRVMEQYHETTQFVIITRQPTKLIPPI 183 Query: 178 RSRCLSIKFNSLSENNLYKALEQ-LKIMGWDSKRDFVK-IAAY--GSVARAI 225 +SRC + + + L L G + D ++ I+AY G V +AI Sbjct: 184 KSRCFPVSMRKPTGGEIETVLRSILDDEGVEYDEDGIQFISAYVKGDVRKAI 235 >gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei TREU927] gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei] gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei gambiense DAL972] Length = 341 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M A AL +++E F + S I+ I+SRC ++F LS Sbjct: 125 KIVILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFRKLSH 184 Query: 192 NNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 ++ + L +Q + D + + A G + A+ L C Sbjct: 185 TDILRRLMYIIQQENVAYTDDGLEALLYLADGDLRSAVNALQATC 229 >gi|73957663|ref|XP_857196.1| PREDICTED: similar to replication factor C 2 (40kD) isoform 2 isoform 3 [Canis familiaris] Length = 318 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 140 DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN----LY 195 D M A AL +++E + F L +AS I+ I+SRC +++ LS+ L Sbjct: 108 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLL 167 Query: 196 KALEQLKIMGWDSKRDFVKIAAYGSVARAI 225 LEQ K+ D + V A G + +A+ Sbjct: 168 TVLEQEKVPYTDDGLEAVIFTAQGDMRQAL 197 >gi|39972449|ref|XP_367615.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] gi|145016723|gb|EDK01153.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] Length = 358 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 111 IDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACN 170 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + K L Q+ Sbjct: 171 QSNKIIEPLQSRCAILRYARLTDAQVVKRLLQI 203 >gi|213401579|ref|XP_002171562.1| replication factor C subunit 5 [Schizosaccharomyces japonicus yFS275] gi|211999609|gb|EEB05269.1| replication factor C subunit 5 [Schizosaccharomyces japonicus yFS275] Length = 358 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 41/71 (57%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ ++I+ D + R+A AL +++E+ + ILI++++ I+ +RSR L I+ + + Sbjct: 128 FKAVVINEADSLTRDAQAALRRTMEKYSDNIRLILIANSTSKIIEPVRSRTLLIRVAAPT 187 Query: 191 ENNLYKALEQL 201 + L ++ Sbjct: 188 HTEIVSVLTKV 198 >gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] Length = 420 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 12/106 (11%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLS 190 V++ID + M +N + LL LE VL + + +P +I+ +RSRC +FN L+ Sbjct: 95 VLLIDEIHRMTKNLQDFLLPYLEN--GHVLLVGSTTENPIMSIVPAVRSRCQIFEFNPLT 152 Query: 191 ENNLYKALEQ-----LKIMGWDSKR---DFVKIAAYGSVARAIKIL 228 E+++ L + LK++ ++ + + AA G + A+ IL Sbjct: 153 EDDIAAVLNKACTKVLKLVDHQVEKNSLNLIAAAADGDLRIALNIL 198 >gi|47459361|ref|YP_016223.1| DNA polymerase III subunit delta' [Mycoplasma mobile 163K] gi|47458691|gb|AAT28012.1| DNA polymerase III subunit delta [Mycoplasma mobile 163K] Length = 319 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 36/64 (56%) Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I+ FL + + +++ I ++ N ++ N+LLK +E PP+ ++ ++ ++STI Sbjct: 95 IQLFLKTSFESNSPKILYIANIEKGNSSSLNSLLKYIENPPKDTFIVMGTNNIKKVISTI 154 Query: 178 RSRC 181 SR Sbjct: 155 VSRS 158 >gi|330040618|ref|XP_003239973.1| DNA replication factor C complex subunit Rfc2 [Cryptomonas paramecium] gi|327206899|gb|AEA39075.1| DNA replication factor C complex subunit Rfc2 [Cryptomonas paramecium] Length = 317 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 117 RIRYFL-SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 +I++F ++ + ++I+ID + + + AL +++E Q FI I + I+ Sbjct: 90 KIKFFCETIIDSEKVKKIIVIDEAESLTKYTQEALRRTIENFSQTARFIFICNCPSKIIE 149 Query: 176 TIRSRCLSIKFNSLSE 191 ++SRC+ +KF + E Sbjct: 150 ALQSRCVVLKFKYVLE 165 >gi|326528909|dbj|BAJ97476.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1174 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 31/210 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P + G + + LS R+ A LF G +G GK + ++ + Sbjct: 408 LSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCT 467 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE-----IR 116 + P +C +DF +G +I VD I Sbjct: 468 ANGENKPCGVC--------------MECNDFF---------SGNGINLIEVDASNKKGIN 504 Query: 117 RIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 RIR+ + +A + ++V ++D ++ +A +K L+EP V+FI I+ + Sbjct: 505 RIRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENL 564 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + SRC F+ + + ++ L ++ + Sbjct: 565 PRAVISRCQKYMFSKIKDIDIVCRLRKIAV 594 >gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 368 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 38/75 (50%) Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 NT +++I++D D M A AL + +E + F +I + ++ ++SRC +F Sbjct: 116 NTNQFKLIILDEADSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRF 175 Query: 187 NSLSENNLYKALEQL 201 L + K ++++ Sbjct: 176 GRLGKPQSIKRIKEI 190 >gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Pichia angusta DL-1] Length = 334 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M +A +AL +++E F LI + I+ + SRC +F L Sbjct: 105 YKLLILDEADSMTSDAQSALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLD 164 Query: 191 ENNLYKALE 199 E N K L+ Sbjct: 165 EENSIKRLQ 173 >gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] Length = 420 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 12/106 (11%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLS 190 V++ID + M +N + LL LE VL + + +P +I+ +RSRC +FN L+ Sbjct: 95 VLLIDEIHRMTKNLQDFLLPYLEN--GHVLLVGSTTENPIMSIVPAVRSRCQIFEFNPLT 152 Query: 191 ENNLYKALEQ-----LKIMGWDSKR---DFVKIAAYGSVARAIKIL 228 E+++ L + LK++ ++ + + AA G + A+ IL Sbjct: 153 EDDIAAVLNKACTKVLKLVDHQVEKNSLNLIAAAADGDLRIALNIL 198 >gi|326498857|dbj|BAK02414.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1174 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 31/210 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P + G + + LS R+ A LF G +G GK + ++ + Sbjct: 408 LSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCT 467 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE-----IR 116 + P +C +DF +G +I VD I Sbjct: 468 ANGENKPCGVC--------------MECNDFF---------SGNGINLIEVDASNKKGIN 504 Query: 117 RIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 RIR+ + +A + ++V ++D ++ +A +K L+EP V+FI I+ + Sbjct: 505 RIRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENL 564 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + SRC F+ + + ++ L ++ + Sbjct: 565 PRAVISRCQKYMFSKIKDIDIVCRLRKIAV 594 >gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa] gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa] Length = 289 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 17 HED-IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 H+D + + L+ + H +LF G G GK T A H L P+ K+ V Sbjct: 18 HQDEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-HQLYGPELYKSMV------ 69 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY----- 130 LN + V+ +I+ F S+ +G Sbjct: 70 ---------------------LELNASDDRGINVVWT----KIKDFASVAVGSGQCQGGY 104 Query: 131 ----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 +++ ++D D M +A NAL ++E + F I + I+ + SRC +F Sbjct: 105 PCPPYKITILDEADSMTEDAQNALRLTMETFSKVTRFFFICNYISRIIEPLASRCAKFRF 164 Query: 187 NSLSE 191 LSE Sbjct: 165 KPLSE 169 >gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] Length = 421 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 12/106 (11%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLS 190 V++ID + M +N + LL LE VL + + +P +I+ +RSRC +FN L+ Sbjct: 96 VLLIDEIHRMTKNLQDFLLPYLEN--GHVLLVGSTTENPIMSIVPAVRSRCQIFEFNPLT 153 Query: 191 ENNLYKALEQ-----LKIMGWDSKR---DFVKIAAYGSVARAIKIL 228 E+++ L + LK++ ++ + + AA G + A+ IL Sbjct: 154 EDDIAAVLNKACTKVLKLVDHQVEKNSLNLIAAAADGDLRIALNIL 199 >gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] Length = 420 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 12/106 (11%) Query: 133 VIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP--TILSTIRSRCLSIKFNSLS 190 V++ID + M +N + LL LE VL + + +P +I+ +RSRC +FN L+ Sbjct: 95 VLLIDEIHRMTKNLQDFLLPYLEN--GHVLLVGSTTENPIMSIVPAVRSRCQIFEFNPLT 152 Query: 191 ENNLYKALEQ-----LKIMGWDSKR---DFVKIAAYGSVARAIKIL 228 E+++ L + LK++ ++ + + AA G + A+ IL Sbjct: 153 EDDIAAVLNKACTKVLKLVDHQVEKNSLNLIAAAADGDLRIALNIL 198 >gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax SaI-1] gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax] Length = 344 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++I++D D M A NA+ + +E + V F L+ + I I+SRC S Sbjct: 109 TCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSF 168 Query: 185 KFNSL-SENNLYKALEQLKIMGWDSKRD 211 +F+ L E + KAL+ K D +D Sbjct: 169 RFSPLKKEYMVNKALDIAKSENVDLTQD 196 >gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis carolinensis] Length = 364 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ I SRC +F LS Sbjct: 145 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLS 204 Query: 191 EN 192 + Sbjct: 205 DK 206 >gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88] Length = 389 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F +L Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALD 206 Query: 191 ENNLYKALEQL 201 + LE + Sbjct: 207 NTAAGERLEHI 217 >gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium reilianum] Length = 385 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL + +E+ + F L+ + I+ + SRC +F SL Sbjct: 134 FKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLD 193 Query: 191 ENNLYKALEQL 201 ++ LE + Sbjct: 194 TSSTKTRLEMI 204 >gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator] Length = 360 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL + +E+ F L+ + I+ I SRC +F LS Sbjct: 137 FKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPITSRCTKFRFKPLS 196 Query: 191 ENNLYKALE 199 + LE Sbjct: 197 DEKSIARLE 205 >gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC 6260] Length = 327 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 31/188 (16%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G+E+ + L G M H ++ G GIGK T A +L + +A + + Sbjct: 24 IVGNEETVERLKLIAQDGNMPH-MIISGLPGIGKTTSIHCLAYELLGKTMYDQATLELNA 82 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 D V + + F SL P G ++ Sbjct: 83 SDDRGIDV---VRNKIKQFAQTKISLPP---------------------------GRHKI 112 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL +++E F + S I+ ++SRC +++N L+++ Sbjct: 113 IILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQ 172 Query: 194 LYKALEQL 201 + L ++ Sbjct: 173 VLSRLLEI 180 >gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas reinhardtii] gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas reinhardtii] gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii] Length = 332 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 11/138 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M ++A NAL +++E + F+ I + I+ + SRC +F L Sbjct: 109 YKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQ 168 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + +E + + D + + G + RAI L ++ ++D + Sbjct: 169 PAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQ-SAARLGGGHVDRATL- 226 Query: 247 RQEYALQKMQQIADELLS 264 L Q+A E++S Sbjct: 227 -----LDVSGQVAPEVVS 239 >gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara] gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata] Length = 299 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 112 VDEIRR-IRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 VD +R I+ F SL +++++D VD M A AL + +E F L + Sbjct: 83 VDVVRENIKNFAKKSLILPANKHKIVILDEVDSMTEPAQQALRRIMEIYSSTTRFALACN 142 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 S I+ I+SRC I+++ L + + K L + + D + + +A G + RA Sbjct: 143 QSNKIIEPIQSRCAVIRYSKLKDEQILKRLVTICDLENLTYTDEGMEALLFSADGDLRRA 202 Query: 225 IKILH 229 + L Sbjct: 203 VNNLQ 207 >gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei TREU927] gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei] gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei gambiense DAL972] Length = 347 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 35/204 (17%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 ++ D V +Q E ++ S M H LF G G GK T A H L PD Sbjct: 28 KSLDEVKSQ----EEVVQALRSTLRQGASMPH-FLFHGPPGTGKTTAILAVA-HELFGPD 81 Query: 64 FSKAPVRMCNPDPCSPF------VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + K+ VR N VK A A+ + + S GK V Sbjct: 82 YIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQS----DGKIYPVPP------ 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++VI++D D + +A AL + +E+ F ++ + I+ I Sbjct: 132 -------------FKVIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPI 178 Query: 178 RSRCLSIKFNSLSENNLYKALEQL 201 SRC +F L + LY+ + ++ Sbjct: 179 ASRCAKYRFKPLIKEALYERISEV 202 >gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga mimivirus] gi|82050828|sp|Q5UQ72|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510; Short=RFC small subunit L510; AltName: Full=Clamp loader small subunit L510 gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga mimivirus] gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga mimivirus] Length = 363 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 36/73 (49%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A +AL +E+ F I + I I+SRC S+ F LS Sbjct: 113 YKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLS 172 Query: 191 ENNLYKALEQLKI 203 + + + L + + Sbjct: 173 DECMVEKLNDISL 185 >gi|148925944|ref|ZP_01809631.1| hypothetical protein Cj8486_0591 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844930|gb|EDK22034.1| hypothetical protein Cj8486_0591 [Campylobacter jejuni subsp. jejuni CG8486] Length = 199 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 ILVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 106 >gi|255732489|ref|XP_002551168.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404] gi|240131454|gb|EER31014.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404] Length = 260 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 15/146 (10%) Query: 112 VDEIR-RIRYFLSL-----TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 +D +R +I+ F S ++N +++I++D D M A N+L + +E+ + F + Sbjct: 13 IDVVRNQIKNFASTRQIFTSSNGNQFKLIILDEADAMTNVAQNSLRRIIEKYTKNCRFCI 72 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYG 219 +++ S + + SRC +F + E+++ + + E +KI D+ +K++ G Sbjct: 73 LANYSHKLNPALISRCTRFRFTPIEESSIKERMNYVIIKEGVKITD-DALESLLKLSK-G 130 Query: 220 SVARAIKILHYDCDKIISSYIDLIHI 245 + RA+ +L C S ++I+I Sbjct: 131 DMRRALNVLQA-CQAAKESQDEIINI 155 >gi|50304249|ref|XP_452074.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641206|emb|CAH02467.1| KLLA0B12221p [Kluyveromyces lactis] Length = 355 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 37/60 (61%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++ ++I+ D + R+A AL +++E+ + I++ + +I++ I+SRCL ++ S S Sbjct: 135 YKCVIINEADSLTRDAQAALRRTMEKYSGNIRLIMLCDSMSSIIAPIKSRCLLVRVPSPS 194 >gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01] gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01] Length = 404 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 156 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 215 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE++ K+ D + + + G + RAI + + S + Sbjct: 216 GSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGSGLVSKPPPG 275 Query: 247 RQEYALQKMQQIADE 261 + E + M DE Sbjct: 276 KDEGGDEDMTDAGDE 290 >gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789] gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291] gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118] gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13] gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23] Length = 353 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 >gi|57529302|ref|NP_001006276.1| replication factor C subunit 3 [Gallus gallus] gi|53133448|emb|CAG32053.1| hypothetical protein RCJMB04_16m20 [Gallus gallus] Length = 356 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 42/74 (56%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T+ ++V+++ VD + ++A +AL +++E+ IL ++ I+ I+SRCLS+ Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSV 182 Query: 185 KFNSLSENNLYKAL 198 + + S ++ L Sbjct: 183 RVPAPSIEDICHVL 196 >gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae] Length = 353 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 >gi|55378501|ref|YP_136351.1| replication factor C large subunit [Haloarcula marismortui ATCC 43049] gi|57013000|sp|Q5V1F7|RFCL_HALMA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|55231226|gb|AAV46645.1| replication factor C large subunit [Haloarcula marismortui ATCC 43049] Length = 508 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 23/137 (16%) Query: 78 SPFV-KQMASHAL-HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL----SLTANTGYW 131 SP + K A+HAL +D + + LN + T D I R+ +LTA G Sbjct: 44 SPGIGKTSAAHALANDMEWPTIELNASDSR-----TKDVINRVAGEAAKSGTLTAGGGGR 98 Query: 132 RVIMIDPVDGMNRNAA-------NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 R++++D D ++ NA AL+K +P ILI++ + + +R+ C I Sbjct: 99 RLVIMDEADNIHGNADRGGARAITALVKEASQP-----MILIANEYYEMSNGLRNNCQDI 153 Query: 185 KFNSLSENNLYKALEQL 201 +F +S ++ L L Sbjct: 154 EFRDVSPRSIVPVLRDL 170 >gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a] Length = 353 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 >gi|6322528|ref|NP_012602.1| Rfc2p [Saccharomyces cerevisiae S288c] gi|730502|sp|P40348|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication factor C2; AltName: Full=Activator 1 41 kDa subunit gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae] gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae] gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae] gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae] gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c] Length = 353 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193 Query: 191 ENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +N L EQ + D + + + G + R I +L Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 >gi|221059105|ref|XP_002260198.1| replication factor c subunit [Plasmodium knowlesi strain H] gi|221061841|ref|XP_002262490.1| replication factor c subunit 4 [Plasmodium knowlesi strain H] gi|193810271|emb|CAQ41465.1| replication factor c subunit, putative [Plasmodium knowlesi strain H] gi|193811640|emb|CAQ42368.1| replication factor c subunit 4, putative [Plasmodium knowlesi strain H] Length = 339 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D VD M A +L + +E F L + S I+ ++SRC I++ Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172 Query: 189 LSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 LS++ + K + ++ I D + + A G + +A+ L Sbjct: 173 LSDDQVLKRIVKICQMENIKYTDDGLETLTFIADGDLRKAVNCLQ 217 >gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger] Length = 388 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F +L Sbjct: 146 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALD 205 Query: 191 ENNLYKALEQL 201 + LE + Sbjct: 206 NTAAGERLEHI 216 >gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18] Length = 395 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 206 Query: 191 ENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + LE++ K+ D + + + G + RAI + + S + Sbjct: 207 GSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGSGLVSKPPPG 266 Query: 247 RQEYALQKMQQIADE 261 + E + M DE Sbjct: 267 KDEGGDEDMADAGDE 281 >gi|195578467|ref|XP_002079087.1| GD22189 [Drosophila simulans] gi|194191096|gb|EDX04672.1| GD22189 [Drosophila simulans] Length = 227 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 39/68 (57%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +VI+I D + ++A +AL +++E+ I+ +++ I+ IRSRCL I+ + +E Sbjct: 130 KVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNE 189 Query: 192 NNLYKALE 199 + L+ Sbjct: 190 TEIVSILQ 197 >gi|149248680|ref|XP_001528727.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146448681|gb|EDK43069.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 362 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H+DI + L SG H L++ G G GK T + + S Sbjct: 8 YRPKTLAQLSYHKDITQNLQALSKSGDFPHLLVY-GPSGAGKKTRIYATLHAIF---GVS 63 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY----- 120 +++ +P +++ + L +L + + R VI D ++ + Sbjct: 64 VEKLKIDVKTFTTPSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQ-DLLKDVASTEQVD 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F + ++ ++V++I+ D ++R+A AL +++E+ + IL+ ++ I++ I+SR Sbjct: 123 FGNQSSKRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSR 182 Query: 181 CLSIKFNSLS 190 L ++ S S Sbjct: 183 TLLVRIPSPS 192 >gi|322787624|gb|EFZ13664.1| hypothetical protein SINV_05560 [Solenopsis invicta] Length = 204 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F L+ Sbjct: 33 FKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLA 92 Query: 191 ENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 L +E K+ ++ ++ + + G + + I +L Sbjct: 93 AEQIMPRLNHVIEAEKLQVTENGKEALMTLSGGDMRKVISVLQ 135 >gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A] gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa] gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A] Length = 389 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 30/230 (13%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + G +DI ++++ + R+ H LLF G G GK + A + + Sbjct: 49 YRPVSLSDVSGQQDILATINKFVDTNRLPH-LLFYGPPGTGKTSTVLALARQIYGAANMR 107 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 + + + D ++ + +T + +I + S + Sbjct: 108 QMVLELNASD--------------------DRGIDVVREQIKTFASTKQIFSLGSSSSRS 147 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 G+ ++I++D D M A AL + +E+ F +I++ S + + SRC + Sbjct: 148 GLAGF-KLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR 206 Query: 186 FNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F+ L E ++ + E +KI+ D+ V++ + G + RA+ +L Sbjct: 207 FSPLKEKDIRVLVDKVIDEENVKILP-DATDALVRL-SKGDMRRALNVLQ 254 >gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus] Length = 357 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL + +E+ F L+ + I+ I SRC +F LS Sbjct: 137 FKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLS 196 Query: 191 ENNLYKALE 199 + LE Sbjct: 197 DEKSISRLE 205 >gi|297296323|ref|XP_002808495.1| PREDICTED: LOW QUALITY PROTEIN: spatacsin-like [Macaca mulatta] Length = 2367 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 W+ +DE + + + W+ + + V ANA+L + P+ F Sbjct: 584 WKLTDAIDEYD-VHENVPKVKESNIWKKLSFEEV------TANAILNN--RIPEAQTFFR 634 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 I S L + L++ F++L +NN+ +A E LK MG+D K +KI Y + Sbjct: 635 IDSHSAQKLEELIGIGLNLVFDNLKKNNIKEASELLKNMGFDVKGQLLKICFYTT 689 >gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis 1221n] gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis 1221n] Length = 326 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 42/230 (18%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R D V NQ+ ++ L ++ + H +LF G G GK T+ A H L D Sbjct: 16 RTLDEVVNQK-----EVVVRLKKFVEEKNIPH-MLFAGPPGTGKTTIAHCLA-HDLYGDD 68 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + K + + D + GK V E R R Sbjct: 69 YRKYMLELNASD--------------------ERKIEVIRGK------VKEFARTRVVGD 102 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++++++D D M +A AL + +E FIL ++ I+ I+SR Sbjct: 103 VP-----FKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAI 157 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ LS ++ L+ + KI + + + + G + RAI IL Sbjct: 158 FRFSPLSREDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQ 207 >gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC 6260] Length = 327 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G ++I++D D M A AL +++E F + S I+ ++SRC +++N Sbjct: 108 GRHKIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNK 167 Query: 189 LSENNLYKALEQL 201 L+++ + L ++ Sbjct: 168 LADDQVLSRLLEI 180 >gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator] Length = 329 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 39/230 (16%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P L HE I K ++++ ++ H LL+ G G GK + A + F+ Sbjct: 17 YRPKNLDELISHETIIKTINKFIDENQLPHLLLY-GPPGTGKTSTILACARKLYTPAQFN 75 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 V L L+ S + G R I + + + T Sbjct: 76 SMVV-----------------------LELNASDDRGIGIVRGQI-------LSFASTGT 105 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC + Sbjct: 106 MYKSAFKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFR 165 Query: 186 FNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 F L+ + L E L + D K+ + ++ G + + I +L Sbjct: 166 FLPLAAEQIIPRLNHVIEAENLNVTE-DGKQALMTLSG-GDMRKVISVLQ 213 >gi|157116416|ref|XP_001658466.1| Rfc5p, putative [Aedes aegypti] gi|108876490|gb|EAT40715.1| Rfc5p, putative [Aedes aegypti] Length = 358 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/105 (20%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 99 LNPK-TGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 +NP G + V+ D I++I + + ++ I++ VD + ++A +AL +++E+ Sbjct: 95 VNPSDAGIYDRVVITDMIKQIAQTQQIDPSGQREFKTIVLSEVDELTKDAQHALRRTMEK 154 Query: 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +L +++ ++ ++SRCL I+ ++ + + L + Sbjct: 155 YVATCRLVLCVNSTSRVIPAVKSRCLGIRVSAPTNEEIVSILNNI 199 >gi|242205746|ref|XP_002468730.1| predicted protein [Postia placenta Mad-698-R] gi|220732115|gb|EED85953.1| predicted protein [Postia placenta Mad-698-R] Length = 192 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 38/56 (67%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++V++I+ D ++R+A AL +++E+ + IL ++++ +++ I+SRCL ++ Sbjct: 129 FKVVVINEADSLSRDAQAALRRTMEKYMTNLRIILCANSTSRLIAPIKSRCLLVRV 184 >gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864] Length = 347 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 39/177 (22%) Query: 90 HDFLYLSYSLNPKTGKWRTVITV------DEIRRIRYF---------------------L 122 +DF +L + P TGK T++ + E+ + R Sbjct: 54 NDFPHLLFYGPPGTGKTSTILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQ 113 Query: 123 SLTANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 SL GY +++I++D D M +A +AL + +E + F LI + I+ + Sbjct: 114 SLRLKWGYPCPPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLA 173 Query: 179 SRCLSIKFNSLSENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 SRC +F L L + L E L+I S + + A+ G + RAI ++ Sbjct: 174 SRCAKFRFKPLDAGILTEKLTAIGDKEGLQIDA--SAINQLTAASGGDMRRAITLMQ 228 >gi|315452816|ref|YP_004073086.1| DNA polymerase III delta prime subunit [Helicobacter felis ATCC 49179] gi|315131868|emb|CBY82496.1| Putative DNA polymerase III delta prime subunit [Helicobacter felis ATCC 49179] Length = 209 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 25/38 (65%) Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 N A NALLK LEEPP + FILI+ +L+T+ SR Sbjct: 69 NAFAQNALLKILEEPPPQTHFILIAKNKHALLNTLLSR 106 >gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara] gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata] Length = 347 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 57/243 (23%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P Q + HEDI L + G++ H LLF G G GK + + ++ N Sbjct: 13 YRPETLQDIISHEDIMSTLMVFAEKGQLPH-LLFHGPPGSGKTSTILAISRYMYGNS--- 68 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 + L + + + G +D +R +I+ F S Sbjct: 69 ------------------------RNGFVLELNASDERG-------IDTVRDQIKAF-SE 96 Query: 125 TANT------------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 T+NT ++I++D D M A NAL + +E V F LI + Sbjct: 97 TSNTFTSSIPVEDPPRTNLKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNK 156 Query: 173 ILSTIRSRCLSIKFNSLSENNLYK------ALEQLKIMGWDSKRDFVKIAAYGSVARAIK 226 I+ I+SRC +F L + + + LE +KI D D + G + R + Sbjct: 157 IIPPIQSRCTGFRFQPLKPDVVRERTKEIAKLENVKIT--DCALDALVEIGQGDMRRVLN 214 Query: 227 ILH 229 L Sbjct: 215 CLQ 217 >gi|67466349|ref|XP_649322.1| activator 1 subunit [Entamoeba histolytica HM-1:IMSS] gi|56465732|gb|EAL43937.1| activator 1 subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 345 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +RVIMI D + A +L +++E + FIL +++ IRSRC+ I+ + Sbjct: 147 FRVIMIFDADHLTNEAQQSLRRTMETGSEVCRFILFCTNPCSVIQPIRSRCVMIRVPLPN 206 Query: 191 ENNLYKALEQL----KIMG 205 + + K +E+L KI+G Sbjct: 207 KQEMTKIVEKLGGNEKIVG 225 >gi|310831185|ref|YP_003969828.1| putative replication factor C subunit [Cafeteria roenbergensis virus BV-PW1] gi|309386369|gb|ADO67229.1| putative replication factor C subunit [Cafeteria roenbergensis virus BV-PW1] Length = 320 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M + A AL+ +E+ +KV F LI + IL +I+SRC +F L Sbjct: 113 KLVILDEADAMTQEAQLALIYLMEKYCEKVRFCLICNYYYKILDSIKSRCSVFRFLPLDI 172 Query: 192 N 192 N Sbjct: 173 N 173 >gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans] gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans] Length = 356 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 30/177 (16%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F L Sbjct: 133 YKIIILDEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLD 192 Query: 191 ENNLYKALEQLKIMGWDSKRDF-------VKIAAYGSVARAIKIL--------HYDCDKI 235 +N AL +++ + + + + + + G + RAI +L H D +I Sbjct: 193 SSN---ALSRVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQI 249 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL--IEFILKEICKSAKAAA 290 + +D E A ++ +EL++ KIA L I+ ++E+ KS + A Sbjct: 250 TALTVD-------ELAGTVPTELLNELVA---KIATANLETIKINVREMIKSGWSGA 296 >gi|71894075|ref|YP_278183.1| DNA polymerase III subunit delta' [Mycoplasma synoviae 53] gi|71850863|gb|AAZ43472.1| putative DNA polymerase III delta subunit [Mycoplasma synoviae 53] Length = 305 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 113 DEIRRIRYFLSLTA-----NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 DEI + FLS N+ ++I+ ++ + NA+LK++EEP + FI S Sbjct: 67 DEILKKEDFLSAIEKFSFKNSDEKSFLIINNLEKTSNVVLNAILKTIEEPSDNIYFIFTS 126 Query: 168 HASPTILSTIRSRCLSIKFNSLSEN 192 +L TI SR I + +S++ Sbjct: 127 KYLFKLLPTIISRAFVINVSKISQD 151 >gi|153951907|ref|YP_001398176.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. doylei 269.97] gi|152939353|gb|ABS44094.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. doylei 269.97] Length = 199 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 106 >gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus] gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a [Rattus norvegicus] gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus] Length = 364 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F LS Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + ++Q +++ K + VKI +A ++I D K I+ Sbjct: 204 DK-----IQQKRLLDIAEKEN-VKIGDE-EIAYLVRISEGDLRKAIT 243 >gi|57238220|ref|YP_178699.1| DNA polymerase III subunit delta' [Campylobacter jejuni RM1221] gi|57167024|gb|AAW35803.1| DNA polymerase III, delta prime subunit, homolog [Campylobacter jejuni RM1221] gi|315057998|gb|ADT72327.1| DNA poymerase III subunit delta' [Campylobacter jejuni subsp. jejuni S3] Length = 199 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 106 >gi|319956394|ref|YP_004167657.1| DNA polymerase iii, delta' subunit [Nitratifractor salsuginis DSM 16511] gi|319418798|gb|ADV45908.1| DNA polymerase III, delta' subunit [Nitratifractor salsuginis DSM 16511] Length = 212 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%) Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRC-------------LSIKFNSLSENNL 194 N LLK +EEPP FIL+ + ++L TIRSR L + +L ++ Sbjct: 77 NKLLKVIEEPPPNKSFILLFRSKASVLPTIRSRLPITVMDRGRADVELELDVKNLEIASV 136 Query: 195 YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD-KIISSYIDLIH 244 Y L++ +G R V+ + +AI+ YD D + + ++ D++ Sbjct: 137 YDFLQKHNRIGAAEARPLVE----ALLKKAIESGAYDLDERALDTFRDVVR 183 >gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior] Length = 356 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL + +E+ F L+ + I+ I SRC +F LS Sbjct: 138 FKIIILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLS 197 Query: 191 ENNLYKALE 199 + LE Sbjct: 198 DEKSIARLE 206 >gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4] gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4] Length = 327 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 ++ +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 84 INTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQALRRTMEIFSATTRFALACN 143 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 S I+ I+SRC ++F L + L + L Sbjct: 144 NSTKIIEPIQSRCAILRFTRLPDEMLLRRL 173 >gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01] gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01] Length = 305 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A A+ + +E + FILI + I I+SRC ++F+ + Sbjct: 97 FKIIILDECDSMTTAAQQAMRRIMEIYSSECKFILICNDFSKIFEPIQSRCAVLRFDKIE 156 Query: 191 ----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 E+ L K ++ + D F+ G + +++ IL Sbjct: 157 SKVIESCLQKIVQAEHMNITDEALSFIIYICDGDIRQSLNILQ 199 >gi|115439733|ref|NP_001044146.1| Os01g0730900 [Oryza sativa Japonica Group] gi|57899145|dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa Japonica Group] gi|113533677|dbj|BAF06060.1| Os01g0730900 [Oryza sativa Japonica Group] Length = 622 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 35/226 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQ 60 + + F P + + G + + LS ++ +F G G GK + +A + Sbjct: 352 LTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCH 411 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV--------ITV 112 +P+ +P PC +A H L GK R+V I + Sbjct: 412 SPE---------HPRPCDSCTSCIA-HNL--------------GKSRSVMEIGPVGNIDM 447 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D I + + L+ ++RV + D D + + + + K ++ P++V+FIL+S + Sbjct: 448 DGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVS-PNLD 506 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAA 217 + I SRC F L E ++ L+ + D RD +K+ A Sbjct: 507 LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRDALKLIA 552 >gi|205355434|ref|ZP_03222205.1| hypothetical protein Cj8421_0586 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346668|gb|EDZ33300.1| hypothetical protein Cj8421_0586 [Campylobacter jejuni subsp. jejuni CG8421] Length = 181 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 40 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 88 >gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis] Length = 235 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++++D D M + A AL +++E + F LI + I+ I SRC +F L+ Sbjct: 75 KMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLT 133 >gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas reinhardtii] gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas reinhardtii] Length = 340 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F +T G +++++D D M A AL +++E F L + Sbjct: 100 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSGTTRFALACN 159 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNL 194 S I+ I+SRC +++ + + ++ Sbjct: 160 MSSKIIEPIQSRCAIVRYTRIPDEDI 185 >gi|255723854|ref|XP_002546856.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404] gi|240134747|gb|EER34301.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404] Length = 362 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 43/71 (60%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++++I+ D ++R+A AL +++E+ + IL+ ++ I++ I+SR L ++ S S Sbjct: 133 FKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPS 192 Query: 191 ENNLYKALEQL 201 +++ L + Sbjct: 193 VDDISNILNNV 203 >gi|283954136|ref|ZP_06371661.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 414] gi|283794415|gb|EFC33159.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 414] Length = 199 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 106 >gi|299472741|emb|CBN80309.1| RFC small subunit [Ectocarpus siliculosus] Length = 323 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTA----NTGYWRVIMIDPVDGMNRNAANALL 151 + +L G R++ T+ + +I +F ++ +T +++++D DG+ A AL Sbjct: 67 TMTLELNAGDSRSIGTMRD--QIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALR 124 Query: 152 KSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +E + F L + + S +RSRC S F+ + + L L ++ Sbjct: 125 HLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGKVQLAHTLREV 174 >gi|110738810|dbj|BAF01328.1| STICHEL [Arabidopsis thaliana] Length = 634 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 27/182 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQNPD 63 + P++ + L G + + L R+ LF+G +G GK + F A + + + Sbjct: 455 YRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEE 514 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C C+ F+ S DF L N K ++RY L Sbjct: 515 M--KPCGYCK--ECNDFM----SGKSKDFWELD-GANKKGAD-----------KVRYLLK 554 Query: 124 -----LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L N+ ++V +ID + + LK LE P QKV+FI I+ + TI+ Sbjct: 555 NLPTILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQ 614 Query: 179 SR 180 SR Sbjct: 615 SR 616 >gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521] gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521] Length = 384 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL + +E+ + F L+ + I+ + SRC +F SL Sbjct: 134 FKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLD 193 Query: 191 ENNLYKALEQL 201 ++ LE + Sbjct: 194 TSSTKARLEMI 204 >gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 39/73 (53%) Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++++D D M A AL +++E F + S I+ ++S+C ++++ Sbjct: 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 Query: 189 LSENNLYKALEQL 201 LS+ ++ K L Q+ Sbjct: 166 LSDEDVLKRLLQI 178 >gi|242085200|ref|XP_002443025.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor] gi|241943718|gb|EES16863.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor] Length = 1074 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 24/190 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVLQN 61 RAF + Q + LS R+ A LF+G +G GK + F A + L Sbjct: 418 RAFPEIVGQNIAAQS-----LSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALNCLTT 472 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P +CN C+ F F +L R I++ I+ + Sbjct: 473 GD--NKPCGVCNQ--CTDF-----------FSGKGTNLKEVDASNRKSISI--IKHLLEN 515 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L +A ++V ++D +A +K L+EP +V+FI I+ + + SRC Sbjct: 516 LPPSAPLSRYKVFVVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRC 575 Query: 182 LSIKFNSLSE 191 F+ + + Sbjct: 576 QKYVFSKIKD 585 >gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis SLH14081] gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis SLH14081] gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis ATCC 18188] Length = 389 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 145 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 204 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 205 GSAAGSRLEKI 215 >gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis ER-3] Length = 389 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 145 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 204 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 205 GSAAGSRLEKI 215 >gi|86149830|ref|ZP_01068059.1| DNA polymerase III, delta prime subunit, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596862|ref|ZP_01100098.1| putative DNA polymerase III delta prime subunit homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|218562235|ref|YP_002344014.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839648|gb|EAQ56908.1| DNA polymerase III, delta prime subunit, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190551|gb|EAQ94524.1| putative DNA polymerase III delta prime subunit homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|112359941|emb|CAL34730.1| hypothetical protein Cj0584 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925845|gb|ADC28197.1| DNA polymerase III subunit delta [Campylobacter jejuni subsp. jejuni IA3902] gi|315927321|gb|EFV06665.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928801|gb|EFV08070.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. jejuni 305] Length = 199 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIKSRLI 106 >gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767] gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii] Length = 368 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F L+ Sbjct: 132 YKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLN 191 Query: 191 ENNLYKALEQLK-IMGWD 207 +N AL +LK I+G + Sbjct: 192 NSN---ALNRLKYIVGQE 206 >gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana] gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana] Length = 815 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 34/212 (16%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVL 59 + + F P L G E + K L GR+ LF G +G GK + F A + L Sbjct: 241 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 300 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--EIRR 117 S+ P +C+ C + +G+ R V+ D ++ R Sbjct: 301 SQAAHSR-PCGLCS--ECKSYF---------------------SGRGRDVMETDSGKLNR 336 Query: 118 IRYFLSLTAN------TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 Y SL + + ++V +ID + + LL SL+ Q +FIL++ Sbjct: 337 PSYLRSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELE 396 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + + SR F+ + + ++ L ++ I Sbjct: 397 KLPRNVLSRSQKYHFSKVCDADISTKLAKICI 428 >gi|86151765|ref|ZP_01069979.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153472|ref|ZP_01071676.1| dna polymerase iii delta prime subunit holb [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613355|ref|YP_001000285.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. jejuni 81-176] gi|157414866|ref|YP_001482122.1| DNA polymerase III subunit delta' [Campylobacter jejuni subsp. jejuni 81116] gi|283955996|ref|ZP_06373485.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|315124103|ref|YP_004066107.1| hypothetical protein ICDCCJ07001_532 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841394|gb|EAQ58642.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843198|gb|EAQ60409.1| dna polymerase iii delta prime subunit holb [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250433|gb|EAQ73391.1| DNA polymerase III, delta prime subunit, homolog [Campylobacter jejuni subsp. jejuni 81-176] gi|157385830|gb|ABV52145.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|283792472|gb|EFC31252.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|315017825|gb|ADT65918.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 199 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIKSRLI 106 >gi|255638181|gb|ACU19404.1| unknown [Glycine max] Length = 149 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++I++D D M +A NAL +++E + F I + I+ + SRC +F L Sbjct: 72 FKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPL 130 >gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966] gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966] Length = 349 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 112 VDEIR-RIRYFLS----LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D +R +I+ F S + ++++++D D M + A AL + +E+ + V F +I Sbjct: 100 IDVVRGQIKAFASTRNVFSTQKDTFKLVILDEADAMTQAAQAALRRVMEQYTRNVRFCII 159 Query: 167 SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 + I+ I+SRC +F+ L + + ++ + Sbjct: 160 CNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSV 194 >gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895] gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895] Length = 333 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 44/190 (23%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + D VY QR D+ + + ++ GR+ H LLF G G GK + A + + Sbjct: 21 SLDDVYGQR-----DVVETVRKFVQEGRLPH-LLFYGPPGTGKTSTICALAKEI-----Y 69 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLS 123 K ++ + LN + +D +R +I+ F S Sbjct: 70 GK------------------------NYRNMVLELNASDDRG-----IDVVRNQIKEFAS 100 Query: 124 LTA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G+ ++I++D D M A NAL + +E+ + F ++++ + + + SRC Sbjct: 101 TRQIFSKGF-KLIILDEADAMTSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRC 159 Query: 182 LSIKFNSLSE 191 +F L+E Sbjct: 160 TRFRFQPLAE 169 >gi|311244843|ref|XP_003121603.1| PREDICTED: spatacsin-like [Sus scrofa] Length = 2425 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 106 WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 W+ VDE ++ + + W + ++ V A+A+L + + P + F + Sbjct: 638 WKLTDAVDEYD-VKENVPKVKESNIWEELSVEEV------IADAILNN-KIPEAQTFFRI 689 Query: 166 ISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 SH++ + I+ L + F+SL +NN+ +A E LK MG++ K +KI Y + Sbjct: 690 NSHSAQRLEELIKIG-LDLVFDSLKKNNVKEASELLKNMGFNVKDQLLKICFYTT 743 >gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143] gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88] Length = 394 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 206 Query: 191 ENNLYKALEQLKIM 204 + LE++ M Sbjct: 207 GSAAGCRLEEIARM 220 >gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 394 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 206 Query: 191 ENNLYKALEQLKIM 204 + LE++ M Sbjct: 207 GSAAGCRLEEIARM 220 >gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767] gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii] Length = 327 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%) Query: 112 VDEIR-RIRYF----LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI 166 +D +R +I+ F +SL A G ++I++D D M A AL +++E F Sbjct: 89 IDVVRNKIKQFAQTKISLPA--GRHKIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFA 146 Query: 167 SHASPTILSTIRSRCLSIKFNSLS-ENNLYKALEQLKI 203 + S I+ ++SRC +++ LS E L + LE K+ Sbjct: 147 CNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKL 184 >gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7] gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum] gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7] Length = 344 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++I++D D M A NA+ + +E + V F L+ + I I+SRC + Sbjct: 109 TCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAF 168 Query: 185 KFNSLSENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F L + E +K D +K + V + G + I++ H D +I++ Sbjct: 169 RFAPLKK-------EYMKNKALDIAKSENVNLTE-GGIDSLIRVGHGDMRRILN 214 >gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis] Length = 352 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 7/107 (6%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A +AL +++E F LI + I+ + SRC +F +L Sbjct: 131 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 190 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +N AL +L+ + + + G + R + I D K I+ Sbjct: 191 SSN---ALSRLQFIANEESLKYED----GVLERILDISQGDLRKAIT 230 >gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545] Length = 331 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 44/203 (21%) Query: 10 YNQRLFG----HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 Y R G E++ + L + + M H +LF G G GK T L PD Sbjct: 13 YRPRKIGDVSHQEEVVRTLQKALETANMPH-MLFYGPPGTGKTTCALAIC-RQLYGPDLF 70 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 K+ V LN + +V+ +I+ F S Sbjct: 71 KSRV---------------------------LELNASDERGISVVR----NKIKGFASTA 99 Query: 126 ---ANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 A GY ++++++D D M +A +AL +++E + F ++ + I+ I Sbjct: 100 VGQAVPGYPCPPYKILILDEADSMTTDAQSALRRTMETHSKVTRFFILCNYVSRIIEPIA 159 Query: 179 SRCLSIKFNSLSENNLYKALEQL 201 SRC +F L + L+ + Sbjct: 160 SRCAKFRFKPLGSEVMSDRLKHI 182 >gi|167005238|ref|ZP_02270996.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 199 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIKSRLI 106 >gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03] Length = 374 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F +L Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALD 206 Query: 191 ENNLYKALEQLKIMGWDSKRDFVKIAAYGS 220 + LE++ + D V+ +GS Sbjct: 207 GSAAGSRLEEIARVEKLRLADGVRPGWWGS 236 >gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum] Length = 358 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +V+++D D M A AL +++E F + Sbjct: 107 IDVVRNRIKGFAQKKVTLPPGRQKVVILDEADSMTAGAQQALRRTMEIYSSTTRFAFACN 166 Query: 169 ASPTILSTIRSRCLSIKFNSLSENN-LYKALE 199 S I+ ++SRC ++++ L++ L++ LE Sbjct: 167 QSNKIIEPLQSRCAILRYSRLTDAQVLHRLLE 198 >gi|237750384|ref|ZP_04580864.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879] gi|229373914|gb|EEO24305.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879] Length = 238 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 143 NRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 N A NALLK LEEPP ++F+L A ++ TI SR + Sbjct: 104 NHYAQNALLKILEEPPSHIIFMLYITARNKLIPTIFSRLV 143 >gi|68472569|ref|XP_719603.1| hypothetical protein CaO19.9577 [Candida albicans SC5314] gi|46441427|gb|EAL00724.1| hypothetical protein CaO19.9577 [Candida albicans SC5314] gi|238881908|gb|EEQ45546.1| activator 1 40 kDa subunit [Candida albicans WO-1] Length = 362 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 26/224 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P +L H+ I L SG H L++ G G GK T + + P Sbjct: 8 YRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVY-GPSGSGKKTRIYCTLNEIF-GPQVE 65 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS----LNPK-TGKWRTVITVDEIRRIRY 120 K + + N FV +S+ +F LS S + P G V+ D ++ + Sbjct: 66 KLKIDVKN------FV--TSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVAS 117 Query: 121 -----FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 F + + +++++I+ D ++R+A AL +++E+ + IL+ ++ I++ Sbjct: 118 TEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIA 177 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYG 219 I+SR L ++ S S +++ I+G ++++ +K + + Sbjct: 178 PIKSRTLLVRIPSPSVDDIN------HILGHVAEKESLKFSTHN 215 >gi|323530193|ref|YP_004232345.1| AAA ATPase central domain-containing protein [Burkholderia sp. CCGE1001] gi|323387195|gb|ADX59285.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1001] Length = 303 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 24/157 (15%) Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS--HALH 90 MH +L G G GK +L A V + F A +R+ DP M A+ Sbjct: 63 MHGVILLVGPPGTGKTSLAKGLASQVAKV--FKGAKLRLLEVDPHGLTSSAMGKTQRAVA 120 Query: 91 DFLYLSYSLNPKTGKWRTVITVDEIRRI---RYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 D S + TG T++ +DE+ + R LSL AN PVD ++R A Sbjct: 121 DLFSQSIAEAAMTGP--TIVLLDEVETLAADRSKLSLEAN----------PVD-VHR-AT 166 Query: 148 NALLKSLE---EPPQKVLFILISHASPTILSTIRSRC 181 +A+L L+ E +LF+ S+ + S SRC Sbjct: 167 DAVLVQLDMLAEQHPNLLFVATSNFPQAVDSAFLSRC 203 >gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138] gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata] Length = 331 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 20/158 (12%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A NAL + +E+ + F ++++ S I + SRC +F L Sbjct: 107 FKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLP 166 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC-------DKIIS 237 + + K + E L+I +K ++++ G + R + +L D+I Sbjct: 167 NDAVEKRMANVLVHEHLRISPA-AKEALLELSN-GDMRRVLNVLQASKATLESPEDEITD 224 Query: 238 SYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + PR Q +Q I +L D A+D L Sbjct: 225 EVIYECCGAPRP----QDIQTILKSILEDDWSTAYDTL 258 >gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40] gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae] Length = 398 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 45/222 (20%), Positives = 97/222 (43%), Gaps = 32/222 (14%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 GH+DI ++++ + R+ H LL+ G G GK + A + + + + + + D Sbjct: 59 GHQDILATINRFVDANRLPHLLLY-GPPGTGKTSTILALARRIYGSKNMRQMVLELNASD 117 Query: 76 PCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 V +Q+ + A ++ S + P +G ++ +++ Sbjct: 118 DRGIDVVREQIKTFASTKQIF-SMAPQPTSGG--------------------SSLASYKL 156 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 I++D D M A AL + +E+ F +I++ + + + SRC +F+ L E + Sbjct: 157 IILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQD 216 Query: 194 LYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + + E++KI ++ VK+ + G + RA+ +L Sbjct: 217 IRSLVDLVIEKEEVKIQ-PEAVDSLVKL-SKGDMRRALNVLQ 256 >gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 353 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 106 IDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACN 165 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + + + Q+ Sbjct: 166 QSNKIIEPLQSRCAILRYARLTDAQVVRRIMQI 198 >gi|145615073|ref|XP_001414254.1| hypothetical protein MGG_13023 [Magnaporthe oryzae 70-15] gi|145021995|gb|EDK06015.1| hypothetical protein MGG_13023 [Magnaporthe oryzae 70-15] Length = 405 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + PV + GH+DI ++++ + R+ H LL+ G G GK + A + + Sbjct: 50 YRPVSLADVSGHQDILATVNKFVDANRLPHLLLY-GPPGTGKTSTILALARRIYGADNVR 108 Query: 66 KAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + + + D V +Q+ + A ++ G + S Sbjct: 109 QMVLELNASDDRGIDVVREQIKTFASTKQIF-------TLGFHKAPAAASSSASTSNNPS 161 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 T T +++I++D D M A AL + +E+ F +I++ + + + SRC Sbjct: 162 ATRPTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTR 221 Query: 184 IKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L E ++ + +E+ + D + A G + RA+ +L Sbjct: 222 FRFSPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQ 271 >gi|326500876|dbj|BAJ95104.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 974 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 21/205 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + F P L G + + L C G++ LF G +G GK + +A + Sbjct: 281 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKIAPMYLFHGPRGTGKTSTARIFAAAL--- 337 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + PC F K+ + +S + K +D + R++ Sbjct: 338 -----NCLSLEEQRPCG-FCKE---------CVILFSGRSRDVKEIDASKMDRLGRVKAL 382 Query: 122 L---SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 L SL + ++V ++D + +A +A++KSL+EP + ++I+I+ ++ T Sbjct: 383 LKSASLVPYSSRFKVFIVDECHLLLEDAWSAIVKSLDEPYRHTVYIMITSDLDSLPRTSV 442 Query: 179 SRCLSIKFNSLSENNLYKALEQLKI 203 + C F + ++ LE++ I Sbjct: 443 TYCQKFHFPKIKVADIVHRLERICI 467 >gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1] gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1] Length = 353 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFL--SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 106 IDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACN 165 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + + + Q+ Sbjct: 166 QSNKIIEPLQSRCAILRYARLTDAQVVRRIMQI 198 >gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus] Length = 329 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M +A NAL + +E+ V F +I + I+ ++SRC +F L+ Sbjct: 111 FKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLA 170 Query: 191 ENNLYKAL------EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 + L E LK+ D K + ++ G + + + +L Sbjct: 171 AEQIIPRLNYVIEAENLKVTE-DGKEALMTLSG-GDMRKVLSVLQ 213 >gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila] gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 373 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 25/173 (14%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 E++ K L SG + H L+ G G GK + +A L P F K + N Sbjct: 59 QEEVIKSLQGVLLSGNLPH-LILHGPPGTGKTSSILAFAKQ-LYGPTFYKERILELNASD 116 Query: 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMI 136 Q+ + F S NP + +++I++ Sbjct: 117 DRGI--QIVRDKIKKFAQQVVSKNPDK---------------------SFKCPNFKIIIL 153 Query: 137 DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 D D M A +AL + +E+ F +I + I+ + SRC+ +F + Sbjct: 154 DEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPI 206 >gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335] gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335] Length = 321 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 37/199 (18%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + L HEDI L++ S + H LL+ G G GK + Sbjct: 7 YRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLY-GPPGTGKTST-------------IV 52 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSL 124 A RM S A + + L + + G +D +R I+ F Sbjct: 53 AAAKRM------------YGSTAAYSSMALELNASDSRG-------IDVVRNEIKEFAGT 93 Query: 125 TA--NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++G ++I++D D M +A AL + +E+ + F LI + I+ ++SRC Sbjct: 94 RQLFHSGI-KLIILDEADAMTSDAQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCT 152 Query: 183 SIKFNSLSENNLYKALEQL 201 +F L + + L ++ Sbjct: 153 RFRFAPLKQEQIRSRLVEV 171 >gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens] Length = 365 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A AL + +E+ + F LI + + I+ ++SRC +F L Sbjct: 133 KLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDP 192 Query: 192 NNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 N+ + L +Q + D + A G + +A+ IL Sbjct: 193 ANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQ 234 >gi|323165608|gb|EFZ51395.1| DNA polymerase III subunit delta' [Shigella sonnei 53G] Length = 207 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 22/32 (68%) Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +LK+LEEPP + F L + +L+T+RSRC Sbjct: 1 MLKTLEEPPAETWFFLATREPERLLATLRSRC 32 >gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans] Length = 350 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 112 VDEIR-RIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R RI+ F +T G +++++D D M A AL +++E F + Sbjct: 106 IDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACN 165 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 S I+ ++SRC +++ L++ + + + Q+ Sbjct: 166 QSNKIIEPLQSRCAILRYARLTDAQVVRRVMQI 198 >gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio] gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio] Length = 358 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F L+ Sbjct: 139 FKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLA 198 Query: 191 EN 192 + Sbjct: 199 ND 200 >gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1] Length = 390 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 33/232 (14%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + GH+DI ++++ R+ H LL+ G G GK + A + + Sbjct: 48 YRPTTLDDVSGHQDILATINKFIEQNRLPHLLLY-GPPGTGKTSTILALARRI-----YG 101 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 A +R QM L L+ S + R I + + L Sbjct: 102 AANMR------------QM-------VLELNASDDRGIDVVREQIKTFASTKQIFSLGGA 142 Query: 126 ANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +G +++I++D D M A AL + +E+ F +I++ S + + SRC Sbjct: 143 SRSGNGMAGFKLIILDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRC 202 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 +F+ L E ++ K +E+ + D + + G + RA+ +L Sbjct: 203 TRFRFSPLKEGDIRVLVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQ 254 >gi|307747503|gb|ADN90773.1| DNA polymerase III, delta prime subunit-like protein [Campylobacter jejuni subsp. jejuni M1] Length = 172 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 I++ D A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 58 IIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIKSRLI 106 >gi|296213866|ref|XP_002753454.1| PREDICTED: spatacsin isoform 2 [Callithrix jacchus] Length = 2324 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA+L + + P + F + SH++ L + L++ F +L +NN+ +A E LK MG+ Sbjct: 687 ANAILNN-KIPEAQTFFRMNSHSAQN-LEELIGIGLNLVFENLKKNNIKEASELLKNMGF 744 Query: 207 DSKRDFVKIAAYGS 220 D K +KI Y + Sbjct: 745 DVKDQLLKICFYTT 758 >gi|296213864|ref|XP_002753453.1| PREDICTED: spatacsin isoform 1 [Callithrix jacchus] Length = 2437 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA+L + + P + F + SH++ L + L++ F +L +NN+ +A E LK MG+ Sbjct: 687 ANAILNN-KIPEAQTFFRMNSHSAQN-LEELIGIGLNLVFENLKKNNIKEASELLKNMGF 744 Query: 207 DSKRDFVKIAAYGS 220 D K +KI Y + Sbjct: 745 DVKDQLLKICFYTT 758 >gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642] gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642] Length = 321 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 112 VDEIR-RIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 +D +R +I+ F + TA G +++I +D D + +A AL +++E + FIL + Sbjct: 81 IDVVRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKVCRFILSCN 139 Query: 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 I+ I+SRC KF + + + K L+++ Sbjct: 140 YVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEI 172 >gi|257053025|ref|YP_003130858.1| replication factor C small subunit 2 [Halorhabdus utahensis DSM 12940] gi|256691788|gb|ACV12125.1| Replication factor C [Halorhabdus utahensis DSM 12940] Length = 336 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/79 (22%), Positives = 39/79 (49%) Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T +G ++ I++D + M + AL + +E+ + F + + S T++ IRSRC Sbjct: 114 SYTPVSGSYKTILLDNAERMREDFQQALRRVMEQYYEATQFAIATRQSSTLIPPIRSRCF 173 Query: 183 SIKFNSLSENNLYKALEQL 201 + + + + L ++ Sbjct: 174 PVTVRAPTHDETEAVLRRI 192 >gi|332094457|gb|EGI99506.1| DNA polymerase III subunit delta' [Shigella boydii 3594-74] Length = 207 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 22/32 (68%) Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +LK+LEEPP + F L + +L+T+RSRC Sbjct: 1 MLKTLEEPPAETWFFLATREPERLLATLRSRC 32 >gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis] gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis] gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis] Length = 363 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F L+ Sbjct: 143 FKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLA 202 Query: 191 E 191 + Sbjct: 203 D 203 >gi|186513260|ref|NP_194210.2| ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|186513264|ref|NP_001119046.1| ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] Length = 857 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 34/212 (16%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLG--FRYAGHVL 59 + + F P L G E + K L GR+ LF G +G GK + F A + L Sbjct: 241 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 300 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD--EIRR 117 S+ P +C+ C + +G+ R V+ D ++ R Sbjct: 301 SQAAHSR-PCGLCS--ECKSYF---------------------SGRGRDVMETDSGKLNR 336 Query: 118 IRYFLSLTAN------TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 Y SL + + ++V +ID + + LL SL+ Q +FIL++ Sbjct: 337 PSYLRSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELE 396 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 + + SR F+ + + ++ L ++ I Sbjct: 397 KLPRNVLSRSQKYHFSKVCDADISTKLAKICI 428 >gi|57242001|ref|ZP_00369941.1| DNA polymerase III delta prime subunit (holB) [Campylobacter upsaliensis RM3195] gi|57017193|gb|EAL53974.1| DNA polymerase III delta prime subunit (holB) [Campylobacter upsaliensis RM3195] Length = 203 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 72 AQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 108 >gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group] Length = 1012 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 35/226 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-LQ 60 + + + P + + G + + LS ++ +F G G GK + +A + Sbjct: 333 LTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCH 392 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV-------- 112 +P+ +P PC AS H+ GK R+++ + Sbjct: 393 SPE---------HPRPCD----SCASCIAHNL-----------GKSRSLVEIGPVGNIDL 428 Query: 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 D I I + L+ RV ++D + + + + + K +E P++V+FILIS + Sbjct: 429 DSIVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSVISKVIERAPRRVVFILIS-PNLD 487 Query: 173 ILSTIRSRCLSIKFNSLSENNLYKALEQLKIM-GWDSKRDFVKIAA 217 + I SRC F L E ++ L+ + G D RD +K+ A Sbjct: 488 LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDVDRDALKLIA 533 >gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina 98AG31] Length = 382 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL + +E + F LI + I+ I SRC +F LS Sbjct: 135 FKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLS 194 Query: 191 ENNLYKALEQL 201 + L ++ Sbjct: 195 STDTLSRLNEI 205 >gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum] gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum] Length = 344 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 13/126 (10%) Query: 117 RIRYFLSLTANT---------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 +I+ F T N +++I++D D M +A AL +++E + F L+ Sbjct: 95 KIKNFAGFTVNKTVSNGNNAGATFKLIILDEADSMTSDAQAALRRTIETTSKTTRFCLLC 154 Query: 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR 223 + I+ + SRC +F L + L+ Q I DS ++ + G + + Sbjct: 155 NYISRIIDPLASRCAKFRFKPLDSEATIERLKYISIQEGIKCTDSVYQAIQTVSDGDMRK 214 Query: 224 AIKILH 229 AI L Sbjct: 215 AITYLQ 220 >gi|296213868|ref|XP_002753455.1| PREDICTED: spatacsin isoform 3 [Callithrix jacchus] Length = 2259 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 147 ANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGW 206 ANA+L + + P + F + SH++ L + L++ F +L +NN+ +A E LK MG+ Sbjct: 687 ANAILNN-KIPEAQTFFRMNSHSAQN-LEELIGIGLNLVFENLKKNNIKEASELLKNMGF 744 Query: 207 DSKRDFVKIAAYGS 220 D K +KI Y + Sbjct: 745 DVKDQLLKICFYTT 758 >gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C) (Eurofung) [Aspergillus nidulans FGSC A4] Length = 387 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 38/71 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F L Sbjct: 146 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLD 205 Query: 191 ENNLYKALEQL 201 + L Q+ Sbjct: 206 NSAAGDRLAQI 216 >gi|260556790|ref|ZP_05829008.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606] gi|260410049|gb|EEX03349.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606] Length = 441 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 14/204 (6%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T G++ VI P G + A +++ + VLFI +PT+ + + S I Sbjct: 194 TIEKGHFCVIGGRPGSGKSTLAQMCAMQTAKRYNMPVLFISAEMDTPTLTNRMISALGHI 253 Query: 185 KFNSLSENNLYKAL-EQL--KIMGWDSKRDFVK------IAAYGSVARAIKILHYDCDKI 235 +N+L +Y + E+L I + + F++ I+ S AR K + I Sbjct: 254 PYNNLHNGEIYDGMFEKLTATIAQFRNLPIFIEEKQKPTISEIQSYARKAKRKYKALGCI 313 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL---- 291 I YI LI P ++ +Q++ I+ +L + ++ + L + K A Sbjct: 314 IVDYIGLIRDPSKKDRVQEVASISRDLKAMAKEFDCPVIALAQLNRAAEGHKPVASDLKD 373 Query: 292 SGQLEE-ADQIAQIYFSLVKRVHA 314 SGQ+E+ ADQI ++ L K +A Sbjct: 374 SGQIEQDADQIIMVHPLLEKETNA 397 >gi|300707136|ref|XP_002995789.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01] gi|239605004|gb|EEQ82118.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01] Length = 352 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%) Query: 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 H +I L +Y H L+F G+ G GK + + H+ S VR Sbjct: 18 HTEIISILQKYNIHNIPH--LIFHGKSGSGKKLIAYNLIKHLF--GQISVPNVRTSEVKA 73 Query: 77 CSPFVKQMASHALHDFLYLS---YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 S ++ A ++F+ +S Y+ K + + + R + F S T T + Sbjct: 74 GSRMIEVNFLEA-NEFIEISPSDYNFQDKVIIQSIIKEMAQSRPVMSFFS-TKKTPSIKF 131 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 ++I ++ A AL +++E + ILI I+ IRSRC+ ++ Sbjct: 132 VIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIEPIRSRCVFVRI 184 >gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 814 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY 130 + + DP P + +MA +A F Y+ + G R +DE+ YFL + N G Sbjct: 498 LASSDPAYPAITEMARNA---FKYIMNGV----GYGRVDFRIDELTGAPYFLEINPNCGM 550 Query: 131 WRV---------IMI--DPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 W +M+ DP R ANA+ ++L + + + ISH +T S Sbjct: 551 WYSPKDGGDFADVMVEGDPHWNHERFVANAVARALRDQAARKPWYFISHDRNGQFTTRAS 610 Query: 180 RCLS 183 + ++ Sbjct: 611 KTVA 614 >gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa] Length = 363 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSE 191 +++++D D M ++A AL + +E+ + F LI + I+ ++SRC +F L Sbjct: 142 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDP 201 Query: 192 NNLYKALEQ-LKIMGWD---SKRDFVKIAAYGSVARAIKILH 229 ++ + L+ ++ G D S + +K + G + +A+ IL Sbjct: 202 MHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQ 243 >gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255] Length = 388 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---- 186 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F Sbjct: 142 FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLD 201 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 NS + + EQ + D D + G + RAI L Sbjct: 202 NSAAGERIGNIAEQEGLQLEDGVIDTLIRCGDGDLRRAITYLQ 244 >gi|299472821|emb|CBN80389.1| EsV-1-87 [Ectocarpus siliculosus] Length = 340 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + A +++++D D M A AL + ++ FI++ + S I+ I+ Sbjct: 110 RGRVGTEATPAIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQ 169 Query: 179 SRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVA 222 SRC ++F+ + + L + Q+ M + D I A VA Sbjct: 170 SRCAILRFSKVEDAQLCLRVRQVCDMA-GVEYDLGGIGALACVA 212 >gi|315638274|ref|ZP_07893455.1| DNA polymerase III delta prime subunit (holB) [Campylobacter upsaliensis JV21] gi|315481621|gb|EFU72244.1| DNA polymerase III delta prime subunit (holB) [Campylobacter upsaliensis JV21] Length = 203 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 146 AANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 A N LLK LEEPP+ + F+++ + +L TI+SR + Sbjct: 72 AQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIKSRLI 108 >gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H] gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H] Length = 344 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 T ++I++D D M A NA+ + +E + V F L+ + I I+SRC S Sbjct: 109 TCEKTALKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSF 168 Query: 185 KFNSL-SENNLYKALEQLKIMGWDSKRD 211 +F+ L E + KAL+ K + +D Sbjct: 169 RFSPLKKEYMVNKALDIAKSENVELTKD 196 >gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus NRRL3357] gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus NRRL3357] Length = 320 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A +AL +++E + F L+ + I+ + SRC +F L Sbjct: 77 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLD 136 Query: 191 ENNLYKALEQL 201 + L Q+ Sbjct: 137 NSAAGDRLAQI 147 >gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces stipitatus ATCC 10500] gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces stipitatus ATCC 10500] Length = 393 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 35/59 (59%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F +L Sbjct: 151 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKAL 209 >gi|332178701|gb|AEE14390.1| hypothetical protein Thena_0756 [Thermodesulfobium narugense DSM 14796] Length = 295 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query: 150 LLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 LK +EEPP+ FI +S I+ST+RSRC+ I Sbjct: 121 FLKIVEEPPENTYFIFLSDFQ--IISTLRSRCIEI 153 >gi|118353287|ref|XP_001009848.1| Replication factor C subunit, putative [Tetrahymena thermophila] gi|89291681|gb|EAR89669.1| Replication factor C subunit, putative [Tetrahymena thermophila SB210] Length = 358 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFS-KAPVR--MCNPDPCSPFVKQMASHALHDFL 93 LL G G GK T + V N K+ R NP+ + + S H Sbjct: 39 LLLYGPNGAGKKTRAMAFLQEVYGNGVHKVKSEEREFKVNPNTSTTVEVNIISSNYH--- 95 Query: 94 YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGY-WRVIMIDPVDGMNRNAANALLK 152 L + + R VI I+ + L N+ ++VI+I+ VD + A +L + Sbjct: 96 -LDVTPADAENQDRAVIQ-KLIKEVASTHQLDPNSQRRFKVIIINEVDRLTLEAQASLRR 153 Query: 153 SLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 ++E+ + ILI+ ++ +RSRCL I+ + SE ++ + +L Sbjct: 154 TMEKYIGRCRLILIAENIGRVILPLRSRCLLIRVAAPSEQDVKAVVRKL 202 >gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar] gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar] Length = 355 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F L+ Sbjct: 138 FKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLA 197 >gi|13242694|ref|NP_077709.1| EsV-1-224 [Ectocarpus siliculosus virus 1] gi|13177494|gb|AAK14638.1|AF204951_223 EsV-1-224 [Ectocarpus siliculosus virus 1] Length = 324 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTA----NTGYWRVIMIDPVDGMNRNAANALLKS 153 +L G R++ T+ + +I +F ++ +T +++++D DG+ A AL Sbjct: 69 TLELNAGDSRSIGTMRD--QIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHL 126 Query: 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL 201 +E + F L + + S +RSRC S F+ + L L ++ Sbjct: 127 IETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREV 174 >gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera] Length = 919 Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 31/194 (15%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 L G + + LS ++ +F G G GK + +A L P M + Sbjct: 282 LVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFA-RALNCPS-------MEH 333 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY--FLSLTANT--- 128 P PC F +H + GK R + V + + + ++L N Sbjct: 334 PKPCG-FCNSCIAHDM--------------GKSRNIREVGPVSNLDFEGIMNLLDNVIAS 378 Query: 129 ---GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 +RV + D D ++ + +A+ K ++ P++++F+L+S + I SRC Sbjct: 379 QLPTQYRVFIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFF 438 Query: 186 FNSLSENNLYKALE 199 F L + ++ L+ Sbjct: 439 FPKLKDADIIYTLQ 452 >gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas reinhardtii] gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas reinhardtii] Length = 356 Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A AL + +E+ + F LI + I+ ++SRC +F LS Sbjct: 134 FKLIILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLS 193 >gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704] gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704] Length = 395 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 38/71 (53%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 +++I++D D M ++A AL +++E + F L+ + I+ + SRC +F +L Sbjct: 150 FKIIILDEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRCSKFRFKTLD 209 Query: 191 ENNLYKALEQL 201 + LE++ Sbjct: 210 GSAAGGRLEEI 220 >gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545] Length = 332 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 40/75 (53%) Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 N +++I++D D M ++A AL + +E+ + F LI + I+ ++SRC +F Sbjct: 94 NATGFKLIILDECDSMTKDAQFALRRVIEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRF 153 Query: 187 NSLSENNLYKALEQL 201 L ++ + ++ + Sbjct: 154 APLGPESVRERVKHV 168 >gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M] gi|42559422|sp|P60374|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M] Length = 322 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 50/235 (21%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + D + NQ E+I+K L + M H LLF G G GK T A H L Sbjct: 11 KRIDDIINQ-----EEIKKALKSFVEKKNMPH-LLFAGPPGTGKTTAALALA-HELYGDA 63 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFL 122 + +FL L+ S + G +D IR +++ F Sbjct: 64 WR------------------------ENFLELNAS--DERG-------IDVIRHKVKEFA 90 Query: 123 SLTANTGY-WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++++ +D D + R+A AL + +E+ Q FIL + I+ I+SR Sbjct: 91 RAKPIGDVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRV 150 Query: 182 LSIKFNSLSE-------NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 KF L + N + K E L + D + + A G + +AI IL Sbjct: 151 TVFKFKPLEKEAFRELINRIVKG-EGLILENEDEIINALYDIAEGDLRKAINILQ 204 >gi|125536092|gb|EAY82580.1| hypothetical protein OsI_37801 [Oryza sativa Indica Group] Length = 1174 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 37/201 (18%) Query: 4 RAFDPVYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHV 58 R+ Y +LF G + + LS ++ A LF+G +G GK + ++ G Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD----- 113 P +K P +C C+ DFL +G +I VD Sbjct: 460 CLAPGENK-PCGICKE--CT------------DFL---------SGNGTNLIEVDASNRK 495 Query: 114 EIRRIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 I RI+ L +A + +++ ++D ++ +A +K L+EP +V+F+ I+ Sbjct: 496 SINRIKNLLENIPPSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDP 555 Query: 171 PTILSTIRSRCLSIKFNSLSE 191 + + SRC F+ + + Sbjct: 556 DNLPRAVISRCQKYVFSKIKD 576 >gi|115487814|ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group] gi|77553354|gb|ABA96150.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group] gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa Japonica Group] gi|125578827|gb|EAZ19973.1| hypothetical protein OsJ_35564 [Oryza sativa Japonica Group] Length = 1174 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 37/201 (18%) Query: 4 RAFDPVYNQRLF----GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA-GHV 58 R+ Y +LF G + + LS ++ A LF+G +G GK + ++ G Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459 Query: 59 LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD----- 113 P +K P +C C+ DFL +G +I VD Sbjct: 460 CLAPGENK-PCGICKE--CT------------DFL---------SGNGTNLIEVDASNRK 495 Query: 114 EIRRIRYFLS---LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 I RI+ L +A + +++ ++D ++ +A +K L+EP +V+F+ I+ Sbjct: 496 SINRIKNLLENIPPSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDP 555 Query: 171 PTILSTIRSRCLSIKFNSLSE 191 + + SRC F+ + + Sbjct: 556 DNLPRAVISRCQKYVFSKIKD 576 >gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana) tropicalis] gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana) tropicalis] gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana) tropicalis] Length = 360 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 ++++++D D M A AL +++E+ + F LI + I+ + SRC +F L+ Sbjct: 143 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLA 202 Query: 191 E 191 + Sbjct: 203 D 203 >gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Penicillium marneffei ATCC 18224] gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Penicillium marneffei ATCC 18224] Length = 394 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 35/59 (59%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 +++I++D D M ++A +AL +++E+ + F L+ + I+ + SRC +F +L Sbjct: 151 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKAL 209 >gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis] Length = 357 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 131 WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF---- 186 +++I++D D M A AL +++E+ + F LI + I+ + SRC +F Sbjct: 139 FKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLD 198 Query: 187 NSLSENNLYKALEQ--LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 N + E L E+ LK G +S V+++ G + +AI L Sbjct: 199 NQVQEERLLAICEKENLKYSG-ESVSALVRVSE-GDLRKAITFLQ 241 Searching..................................................done Results from round 2 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] gi|254039894|gb|ACT56690.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ Sbjct: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY Sbjct: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR Sbjct: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI Sbjct: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ Sbjct: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI Sbjct: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 >gi|315122340|ref|YP_004062829.1| DNA polymerase III subunit delta' [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495742|gb|ADR52341.1| DNA polymerase III subunit delta' [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 347 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 256/347 (73%), Positives = 296/347 (85%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 MID DP+YN++LFGHE+IE+FLSQYY SG+MHHA LFEGE+GIGKATLGF YA HVLQ Sbjct: 1 MIDGILDPIYNRKLFGHEEIEEFLSQYYSSGKMHHAFLFEGEEGIGKATLGFHYARHVLQ 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPDF AP +MC+PDP SPFVKQMAS ALH+FLYLSY LN KTGK RTVITVDEIRRIR+ Sbjct: 61 NPDFRNAPSQMCSPDPNSPFVKQMASRALHNFLYLSYPLNVKTGKLRTVITVDEIRRIRH 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 FLSLTA+ GYWRVI+IDPVDGMN NAANALLKSLEEPP+KV+FILISHAS IL TIRSR Sbjct: 121 FLSLTADKGYWRVIIIDPVDGMNNNAANALLKSLEEPPKKVVFILISHASRVILPTIRSR 180 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLS+KF +LSE NLYKALE LKI+ SK D + IA+YGSV+RAIKIL+Y CDKII+SYI Sbjct: 181 CLSVKFKTLSEKNLYKALENLKIVDLHSKIDLINIASYGSVSRAIKILNYGCDKIIASYI 240 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 DL+H ++ L KMQQI+DEL QD+KIAFDF +EFI+KE+ K AK AALSG+LEEADQ Sbjct: 241 DLMHAQEEKSLLYKMQQISDELSPQDKKIAFDFFVEFIMKEMFKGAKEAALSGKLEEADQ 300 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I QIY S+ K+V +F +YNLDRRQ+IF+LL KAR+CN +Y R FYAI Sbjct: 301 IVQIYSSVKKKVDSFYIYNLDRRQIIFYLLEKARDCNIIYERIFYAI 347 >gi|86357777|ref|YP_469669.1| DNA polymerase III subunit delta' [Rhizobium etli CFN 42] gi|86281879|gb|ABC90942.1| DNA polymerase III delta prime subunit protein [Rhizobium etli CFN 42] Length = 341 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 148/337 (43%), Positives = 217/337 (64%), Gaps = 4/337 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL + Sbjct: 9 LDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFASHVLSH 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD + AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPNTAPEAIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K + LS+ L AL L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLSPLSDEALVAALGHLGISGEGGA---VLAAAKGSVGEALKLLNYGGGEIIAAYDE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+AAA G++ A+++ Sbjct: 246 VLT-TEGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARAAAGDGEIATAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 305 ARLYSEITERLAVSSAYNLDRKQTVISILADIKQPGR 341 >gi|327193415|gb|EGE60314.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CNPAF512] Length = 341 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 147/336 (43%), Positives = 217/336 (64%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL + Sbjct: 9 LDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLSH 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPQTAPETIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K + LS+ L AL+ L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLSPLSDEALAAALDHLGITGEGGA---VLAAAKGSVGEALKLLNYGGGEIIAAYDE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ + A + M ++AD L ++ FDF + + +I A+ AA G++ A+++ Sbjct: 246 VLSA-QGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARMAAGEGKIATAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 305 ARLYSEITERLAISSAYNLDRKQTVISILADIKQPG 340 >gi|190891836|ref|YP_001978378.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CIAT 652] gi|190697115|gb|ACE91200.1| DNA polymerase III protein, delta prime subunit [Rhizobium etli CIAT 652] Length = 341 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 146/336 (43%), Positives = 216/336 (64%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N LFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL + Sbjct: 9 LDGAIWPAENTMLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLSH 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPQTAPEAIGDPDPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K + LS+ L AL+ L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLSPLSDEALAAALDHLGITGEGGA---VLAAAKGSVGEALKLLNYGGGEIIAAYDE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ + A + M ++AD L ++ FDF + + +I A+ AA G++ A+++ Sbjct: 246 VLSA-QGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGKGEIATAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ S YNLDR+Q + +L+ ++ Sbjct: 305 ARLYSDITERLAISSAYNLDRKQTVISILADIKQPG 340 >gi|218463773|ref|ZP_03503864.1| DNA polymerase III subunit delta' [Rhizobium etli Kim 5] Length = 341 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 148/336 (44%), Positives = 214/336 (63%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 9 LDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLSY 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +P P S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPETAPETIGDPHPDSAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVMSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K + LS++ L AL+ L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLSPLSDDALAAALDHLGISGEGGA---VLAAAKGSVGEALKLLNYGGGEIIAAYGE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+ AA GQ+ A+++ Sbjct: 246 VLSA-EGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGEGQIAAAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ YNLDR+Q I +LS ++ Sbjct: 305 ARLYSEITERLTISDAYNLDRKQTIISILSDIKQPG 340 >gi|241204715|ref|YP_002975811.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858605|gb|ACS56272.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 341 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 147/336 (43%), Positives = 214/336 (63%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N R+FGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL + Sbjct: 9 LDGAIWPGENTRMFGHAEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLSH 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PDP SP +Q+AS A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPQTAPETIGDPDPASPVSRQIASGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K L+++ L AL L I G V AA GSV A+K+L+Y +II++Y D Sbjct: 189 LPLKLAPLADDELVAALTHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAY-D 244 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + A + M ++AD L ++ FDF + + +I A+ AA G++ A+++ Sbjct: 245 EMFAAEGPTARKAMHRLADALSGRESDTIFDFFVSHVGDDIMNRARVAAGEGRIATAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 305 ARLYSEITERLTISDGYNLDRKQTIISILADIKQPG 340 >gi|222086012|ref|YP_002544544.1| DNA polymerase III delta prime subunit protein [Agrobacterium radiobacter K84] gi|221723460|gb|ACM26616.1| DNA polymerase III delta prime subunit protein [Agrobacterium radiobacter K84] Length = 345 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 149/335 (44%), Positives = 217/335 (64%), Gaps = 1/335 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHED E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 VLDGAIPPQDNTRLFGHEDAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q++ A H+ L+L+ ++ KTGK ++ ITVDE+RR Sbjct: 68 HPDPATAPETISDPDPASAVSRQISGGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WRV++IDP D +NRNAANA+LK LEEPP++ LF+++SHA +L TIRSR Sbjct: 128 FFSQTSGTGNWRVVIIDPADDLNRNAANAILKILEEPPKRALFLVLSHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL +K LS+N L AL L I + + AA GSV A+K+L+Y +I+++Y Sbjct: 188 CLPLKLAPLSDNALSNALGHLGIGLSAGQGSELLAAAKGSVNEALKLLNYGGGEIVAAYE 247 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +I A + M ++AD L +++ + F F + I +I A+AAAL G L A++ Sbjct: 248 QVISA-EGPAARRAMHRLADALSAKESETIFGFFVSHIGDDIMARARAAALEGHLTVAEK 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +A++Y + +R+ YNLDR+Q I +L + ++ Sbjct: 307 LARLYSDVTERLTVSQAYNLDRKQTIITVLGELKQ 341 >gi|116252222|ref|YP_768060.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. viciae 3841] gi|115256870|emb|CAK07964.1| putative DNA polymerase III, delta' subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 341 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 147/336 (43%), Positives = 214/336 (63%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N RLFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL + Sbjct: 9 LDGAIWPGENTRLFGHAEAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHVLSH 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PD S +Q+AS A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPETAPETIGDPDLASSVSRQIASGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K L+++ L AL L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLAPLADDELVAALAHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAYDE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+AAA GQ+ A+++ Sbjct: 246 ML-AAEGPTARKAMHRLADALSGRESDTIFDFFVSHVGDDIMNRARAAAGEGQIAAAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 305 ARLYSEITERLTISDGYNLDRKQTIISILADIKQPG 340 >gi|209549398|ref|YP_002281315.1| DNA polymerase III subunit delta' [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535154|gb|ACI55089.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 341 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 147/336 (43%), Positives = 215/336 (63%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N RLFGHE+ + FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 9 LDGAIWPGENTRLFGHEEAQAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLSY 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD + AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 69 PDPATAPETIGDPDPASSVSRQINSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 128 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 129 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 188 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K L+++ L AL L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 189 LPLKLAPLADDALMAALAHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAYDE 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+AAA GQ+ A+++ Sbjct: 246 MLSA-EGPTARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARAAAGEGQIAAAERL 304 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 305 ARLYSEITERLTISDAYNLDRKQTIIGILADIKQPG 340 >gi|15965356|ref|NP_385709.1| DNA polymerase III subunit delta' [Sinorhizobium meliloti 1021] gi|307312731|ref|ZP_07592362.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C] gi|307317215|ref|ZP_07596656.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83] gi|15074536|emb|CAC46182.1| Putative DNA polymerase III, delta' subunit [Sinorhizobium meliloti 1021] gi|306897303|gb|EFN28048.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83] gi|306899456|gb|EFN30088.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C] Length = 343 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 137/336 (40%), Positives = 213/336 (63%), Gaps = 1/336 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N +LFGH++ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A H+L Sbjct: 8 VLEGALAPATNSKLFGHQEAEAFLAQSYRSGKGHHAVLIEGPEGIGKATLAFRFANHILS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP R+ +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPDPADAPERLADPDPASMVTRQLASGASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ LF++++HA +L TIRSR Sbjct: 128 FFGQTSGTGNWRIVIIDPADDLNRNAANAILKMLEEPPRRSLFLVLTHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL ++ L L +AL L + + V AA GSV+ A+K+++Y I ++ Sbjct: 188 CLPLRLKPLDTQALRQALAHLGLDLAGPDAERVLAAASGSVSEALKLINYGGLDIAGAFD 247 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D++ + A + M ++AD L +D + FDF + I + A+ AA++G + A++ Sbjct: 248 DIL-AGQGPAARKNMHKLADVLSGKDSETIFDFFSSLLSGRIMQLAREAAIAGDVGRAER 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A++ S+ +R+ + YNLDR+Q I LL ++ Sbjct: 307 FARLSSSVGERLAVSNAYNLDRKQTILSLLDDLKDA 342 >gi|325292850|ref|YP_004278714.1| DNA polymerase III, delta prime subunit [Agrobacterium sp. H13-3] gi|325060703|gb|ADY64394.1| DNA polymerase III, delta prime subunit [Agrobacterium sp. H13-3] Length = 341 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 136/334 (40%), Positives = 218/334 (65%), Gaps = 1/334 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N +LFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 7 VLDGAIAPQQNTKLFGHGEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLT 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PD S +Q+ S A H+ L+L+ + KTG+ ++ ITVDE+RR + Sbjct: 67 HPDPATAPDFLADPDTESLVSRQITSGASHNLLHLTRPADEKTGRVKSAITVDEVRRAGH 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ +F+++SHA +L TIRSR Sbjct: 127 FFSQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSR 186 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C+ ++ LS+ ++ ++L+ L I KRD + A+ GSVA+A+K+++Y I+ + Sbjct: 187 CMPLRLLPLSDADMVQSLDHLGISPAGEKRDALLSASKGSVAQALKLMNYGGSDIVEALA 246 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 ++ A ++M ++A+ L +D I F +E + +E+ A+AAA++G + A++ Sbjct: 247 SVMTA-EGPGARKQMHKLAEVLAQKDGDIVLGFFMEHVTEELMARARAAAMAGDISAAEK 305 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 A++ +L +R+ YNLD++QM+ +L R Sbjct: 306 HARLSSTLSERITVAQAYNLDKKQMVLSILEDVR 339 >gi|159184783|ref|NP_354503.2| DNA polymerase III subunit delta' [Agrobacterium tumefaciens str. C58] gi|159140071|gb|AAK87288.2| DNA polymerase III, delta prime subunit [Agrobacterium tumefaciens str. C58] Length = 341 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 140/335 (41%), Positives = 224/335 (66%), Gaps = 1/335 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++D A P N RLFGHE+ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 7 VLDGAIAPQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLT 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD + AP + +PDP S +Q+ + A H+ L+L+ ++ KTG+ ++ ITVDE+RR + Sbjct: 67 HPDPASAPDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGH 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F S T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ +F+++SHA +L TIRSR Sbjct: 127 FFSQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSR 186 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C+ ++ LS+ + +AL+QL I KRD + A+ GSVA+A+K+++Y I+ ++ Sbjct: 187 CMPLRLLPLSDAAMVQALDQLDISPEGEKRDALLTASKGSVAQALKLMNYGGSDIVEAFA 246 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 +++ A ++M ++A+ L +D I F +E + +E+ + A+AAA++G + A++ Sbjct: 247 EVMSA-EGPGARKRMHKLAEVLAQKDGDIVLGFFMEHVTEELMERARAAAMAGDIAAAEK 305 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A++ +L +R+ YNLD++QM+ +L R Sbjct: 306 HARLSSTLSERITVAQAYNLDKKQMVLSILEDIRS 340 >gi|227822154|ref|YP_002826125.1| DNA polymerase III subunit delta' [Sinorhizobium fredii NGR234] gi|227341154|gb|ACP25372.1| DNA polymerase III, delta prime subunit [Sinorhizobium fredii NGR234] Length = 343 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 132/336 (39%), Positives = 211/336 (62%), Gaps = 1/336 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A PV N +LFGH + E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A HVL Sbjct: 8 VLEGAVAPVENSKLFGHREAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ ++AP + +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPEPAEAPEHLGDPDPASLVTRQLASGASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+++IDP D +NRNAANA+LK LEEPP++ LF++++HA +L TIRSR Sbjct: 128 FFGQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPRRSLFLVLTHAPGKLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL ++ L + AL L + + AA GSV+ A+K+++Y I +++ Sbjct: 188 CLPLRLKPLEPEPMRLALAHLGFDLTGPNAEGIIAAASGSVSEALKLINYGGLDIAAAFE 247 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D++ + +++ ++AD L ++D + +DF + + + A+ AA++G + A++ Sbjct: 248 DVL-AGQGPAVRKQVHKLADILSAKDSETIYDFFSSLFMGRVMRLAREAAIAGDIGRAER 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A + SL +R+ YNLDR+Q I LL ++ Sbjct: 307 FATLSGSLTERLTLSEAYNLDRKQTILSLLDDLKDA 342 >gi|150396509|ref|YP_001326976.1| DNA polymerase III subunit delta' [Sinorhizobium medicae WSM419] gi|150028024|gb|ABR60141.1| putative DNA polymerase III, delta' subunit protein [Sinorhizobium medicae WSM419] Length = 343 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 136/336 (40%), Positives = 213/336 (63%), Gaps = 1/336 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N RLFGH++ E FL+Q Y SG+ HHA+L EG +GIGKATL FR+A H+L Sbjct: 8 VLEGALAPAMNSRLFGHQEAEAFLAQSYKSGKGHHAILIEGPEGIGKATLAFRFANHILS 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P+ ++AP R+ +PDP S +Q+AS A H+ L+L+ ++ KTG+ + ITVDE+RR Sbjct: 68 HPEPAEAPSRLADPDPESIITRQLASAASHNLLHLARPVDEKTGRAKGAITVDEVRRAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR++++DP D +NRNAANA+LK LEEPP + LF++++HA +L T+RSR Sbjct: 128 FFGQTSGTGNWRIVIVDPADDLNRNAANAILKMLEEPPPRSLFLVLTHAPGRLLPTVRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CL ++ L +L +AL L + V AA GSV+ A+K+++Y I ++ Sbjct: 188 CLPLRLKPLETADLRQALTHLGVDLAGPNAGRVLAAASGSVSEALKLVNYGGLDIAEAFE 247 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D++ + + + M ++AD L +D + FDF + I + A+ AA++G + A++ Sbjct: 248 DIL-AGQGPGSRKSMHKLADVLSGRDSETIFDFFSSLLAGRIMQLAREAAIAGDVGRAER 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A++ S+ +R+ S YNLDR+Q I LL +E Sbjct: 307 FARLSSSVGERLALSSAYNLDRKQTILSLLDDLKEA 342 >gi|222148590|ref|YP_002549547.1| DNA polymerase III subunit delta' [Agrobacterium vitis S4] gi|221735576|gb|ACM36539.1| DNA polymerase III delta prime subunit [Agrobacterium vitis S4] Length = 346 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 128/332 (38%), Positives = 218/332 (65%), Gaps = 1/332 (0%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D A P N R+FGH E+FL+ Y SG++HHA+L EG +GIGKATL FR+A HVL + Sbjct: 13 LDGAIAPFANDRMFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSH 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD + AP + +PDP S +Q+AS A H+ L+++ ++ KTG+ ++ ITV+EIR+ +F Sbjct: 73 PDPASAPFVIADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEIRKAGHF 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ G WR++++DP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 133 FSQTSGGGNWRIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSRC 192 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 + +K +L ++L AL L + + + + GSV++A+K+++Y +II+++ + Sbjct: 193 MPLKLQTLGVDDLASALAHLGVSPPVEQMAALSDLSKGSVSQALKLINYGGMEIIAAF-N 251 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 I A ++M ++AD L ++D + + F IE + + + +A+ A++G L A+++ Sbjct: 252 AILASEGPAARKQMHKLADALSAKDSDVIYHFFIEHLSEFLMDNARQVAMAGDLARAERL 311 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 +++ ++++++ YNLDR+Q + +L + Sbjct: 312 SRLSSAIIEKLGVAGAYNLDRKQTLLEILGEV 343 >gi|163760147|ref|ZP_02167230.1| DNA polymerase III subunit delta' [Hoeflea phototrophica DFL-43] gi|162282546|gb|EDQ32834.1| DNA polymerase III subunit delta' [Hoeflea phototrophica DFL-43] Length = 339 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 133/331 (40%), Positives = 206/331 (62%), Gaps = 3/331 (0%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +++ A P N LFGH+ + FL+ Y SGRMHHA+L EG QG+GKATL +R+A H+L Sbjct: 8 VLEGAIPPGENTVLFGHDAAQSFLANAYRSGRMHHAILIEGPQGVGKATLAYRFARHMLA 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD AP + + P P +Q+AS A H+ L+L+ ++ KTGK ++VITVDE+R+ Sbjct: 68 HPDPLSAPEMIADSGPDDPLTRQIASGASHNLLHLARPVDEKTGKVKSVITVDEVRKAGK 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T+ TG WR+ +IDP D +NRNAANALLK LEEPP++ LF+++SH +L TIRSR Sbjct: 128 FFGQTSGTGNWRIAIIDPADDLNRNAANALLKILEEPPKRSLFLVLSHTPGRLLPTIRSR 187 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 CLS++ LS +L AL L + D + + GSVARA+ + +Y +I +++ Sbjct: 188 CLSLRLQPLSAPDLDLALGHLG--AAPGEADAIIRLSEGSVARALLLRNYGGAEIAEAFV 245 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D+I + + ++A+ L ++D+ +A+ F E ++ I A+ A +G L EAD+ Sbjct: 246 DIIERGSLAN-REPIHKLAETLSARDRDVAYQFFTELVIDRIQAMARDAGAAGDLNEADR 304 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 +A++ L + + YNLDR+Q + H+ + Sbjct: 305 LARLSVELAEHFATAAAYNLDRKQTVLHVFT 335 >gi|239831998|ref|ZP_04680327.1| DNA polymerase III subunit delta' [Ochrobactrum intermedium LMG 3301] gi|239824265|gb|EEQ95833.1| DNA polymerase III subunit delta' [Ochrobactrum intermedium LMG 3301] Length = 358 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 129/338 (38%), Positives = 192/338 (56%), Gaps = 5/338 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ +P + + GH +I FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L + Sbjct: 14 IEGVPEPSASDYVSGHREISDFLAQAYREGRMHHALLFEGAQGIGKATLAFHLAGHMLAH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +AP + PD P +Q+A L+++ + KTGK++T I V+EIRR+ +F Sbjct: 74 GNNGQAPEHITAPDFARPLWRQIAGGMHPAVLHINRPFDQKTGKFKTGIPVEEIRRVTHF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ TA+ WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC Sbjct: 134 LTRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISS 238 SI F L + L AL + + + GSV +A+ ++ +I + Sbjct: 194 QSIGFKPLDDKALTDALSHVGPGVGMEAGRVTQTLLQRSEGSVRKALLLVANGGIEISDT 253 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ Q + L K Q + L ++ ++ ++ + +L + A+ A +GQL +A Sbjct: 254 VDTLLE--GQNFDLPKAQALGGILNGRESEVQYELFRDHLLGRVAMEARRRAEAGQLHDA 311 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 D+ ++ + L + YNLDRRQ + LL K Sbjct: 312 DRWSRFWSDLSRETVDAETYNLDRRQAVVILLEKTHRA 349 >gi|153009408|ref|YP_001370623.1| DNA polymerase III subunit delta' [Ochrobactrum anthropi ATCC 49188] gi|151561296|gb|ABS14794.1| DNA polymerase III, delta prime subunit domain protein [Ochrobactrum anthropi ATCC 49188] Length = 358 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 133/338 (39%), Positives = 198/338 (58%), Gaps = 5/338 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ +P + + GH +I FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L + Sbjct: 14 IEGVPEPSASDYVAGHREISDFLAQAYREGRMHHALLFEGAQGIGKATLAFHLAGHMLAH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D S+AP + PD P +Q+A L+++ + KTGK++T I V+EIRR+ +F Sbjct: 74 GDNSEAPEHIAAPDFARPLWRQIAGGMHPAVLHINRPFDQKTGKFKTGIPVEEIRRVTHF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ TA+ WR++++DP D MNRNAANALLK+LEEPP + LFILISH++ +L TIRSRC Sbjct: 134 LTRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSAGRLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALEQLK---IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 SI F L + L AL + M D+ + + GSV +A+ ++ +I + Sbjct: 194 QSIGFKPLDDAGLTDALAHVGPGVGMQADAVTQTLLQRSEGSVRKALLLVANGGIEISDT 253 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ Q + L K Q + L ++ ++ ++ + +L ++ A+ A +GQL +A Sbjct: 254 VDSLLE--GQNFDLPKAQALGGILNGRESEVQYELFRDHLLGQVAIEARRRAEAGQLRDA 311 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 D+ ++ + LV+ YNLDRRQ + LL K Sbjct: 312 DRWSRFWSDLVRETVDAETYNLDRRQAVVILLEKTHRA 349 >gi|319783484|ref|YP_004142960.1| DNA polymerase III, delta prime subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169372|gb|ADV12910.1| DNA polymerase III, delta prime subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 351 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 4/340 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P L GH L+ Y +G++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPLLVGHGQAAGVLTAAYRAGKLPHALIFSGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PDF++AP + PDP S +Q+A+ A L+L+ LN KT ++TV+TVDEIR++ F Sbjct: 74 PDFAQAPESLAAPDPASSLFRQIATGAHPSVLHLTRPLNDKTKSFKTVVTVDEIRKVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LSLT++ G +RV+++DP D MN NAANALLK+LEEPP + LFILI HA ++L TIRSRC Sbjct: 134 LSLTSHDGSYRVVIVDPADDMNTNAANALLKNLEEPPARTLFILIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALE--QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 ++ L ++L LE + + R + A GS AI + Y +I S+ Sbjct: 194 QVVRLTPLDADDLMAVLETTEPAPPEDPAARAALVERAGGSARNAILLTQYGGLEIASTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L+ + + + ++A+ + +DQ I FD L + +A AAL+G L A Sbjct: 254 DALVTGRKSD--VGGAFRLAEAVAGRDQAIQFDIFNRRALDLLSDAASQAALAGDLARAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 ++ + + + YNLD++Q ++ + + Sbjct: 312 TLSDTWHEALDAISETDTYNLDKKQHALIMIDRLNSAMRM 351 >gi|291532777|emb|CBL05890.1| DNA polymerase III, subunits gamma and tau [Megamonas hypermegale ART12/1] Length = 334 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 141/352 (40%), Gaps = 45/352 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS +G++ HA LF G +G GK + A + Sbjct: 6 LYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ + D + + N +DEIR +R Sbjct: 66 HGPTPTPCNQC------VCCQKINDGSFMDVFEIDAASNR---------GIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + + TI+SRC Sbjct: 111 VKFAPVDGKYKVYIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++++++ K L +++ + + I A G + A+ +L D+ ++ Sbjct: 171 QRYDFKRITKDDILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLL----DQCLA 226 Query: 238 SYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 D + + + L + QI D L +D + L E I Sbjct: 227 FTKDELTVTQVRKVLGLVGHDWVWQITDALAKKDSQTILTILDEVI-------------- 272 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDF 344 + +I Q+ LV + +Y + + ++ + E ++F Sbjct: 273 ---AQGKEIKQLLNELVLHFRSIMLYKASNKLLNLNMYFEDEEVLSRQAKEF 321 >gi|13470653|ref|NP_102222.1| DNA polymerase III subunit delta' [Mesorhizobium loti MAFF303099] gi|14021395|dbj|BAB48008.1| DNA polymerase III, delta prime subunit [Mesorhizobium loti MAFF303099] Length = 349 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 127/336 (37%), Positives = 191/336 (56%), Gaps = 4/336 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P RL GH + L+ Y SG++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPRLVGHGQAAEMLAAAYRSGKLPHALIFAGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P F +AP R+ NPDP SP +Q+A+ A L+L+ +N KT ++TV+TVDEIRR+ F Sbjct: 74 PAFEQAPERLANPDPASPLFRQIATGAHPGVLHLTRPMNDKTKSFKTVVTVDEIRRVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS+T++ G +RV+++DP D MN NAANALLK+LEEPP + LFILI HA ++L TIRSRC Sbjct: 134 LSMTSHDGSYRVVIVDPADDMNANAANALLKNLEEPPARTLFILIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALE--QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 I+ L ++L LE + + R + A GS AI + Y +I + Sbjct: 194 QVIRLTPLDADDLLAVLETAEPPPPDDPAARAALVERAGGSARNAILLTQYGGLEIAGTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L+ + + + ++A+ + +DQ I FD L + +A AALSG L A Sbjct: 254 DALVAKGKSD--IGGAYRLAEAVAGRDQTIQFDIFNRRALDLLSDAASQAALSGDLARAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + + + YNLD++Q ++ + + Sbjct: 312 ILSDTWHEALDAISETDTYNLDKKQHALTMIDRLKS 347 >gi|306843868|ref|ZP_07476463.1| DNA polymerase III, delta'' subunit [Brucella sp. BO1] gi|306275623|gb|EFM57347.1| DNA polymerase III, delta'' subunit [Brucella sp. BO1] Length = 360 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 140/332 (42%), Positives = 195/332 (58%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QG+GKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGVGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP LFILISH+ +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPAHALFILISHSLGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISASDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + LV+ YNLDRRQ + LL K Sbjct: 318 WSDLVRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|319408564|emb|CBI82217.1| DNA polymerase III, delta prime subunit [Bartonella schoenbuchensis R1] Length = 351 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ P N + GH+++ FL+Q GR+HHALLFEGE+GIGKATL F +A ++L N Sbjct: 13 IEGVLSPSQNNIIIGHKEVRHFLAQIRKEGRVHHALLFEGERGIGKATLAFHFAWNILSN 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S Q+ + +++S + KT K++T I++D+IR + +F Sbjct: 73 QESD-----FLQPEYDSVVWHQIMQGSHPGLIHVSRHFDLKTQKFKTSISIDDIRDVTHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ G WR+I+ID D M+R+AANA+LK LEEPP K LFI+I+H S +L TIRSRC Sbjct: 128 LNQTSQDGGWRIIIIDSADDMSRSAANAILKMLEEPPVKALFIIITHCSGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L ++ + + + + + + V + G+ +A+ + Y +I+ + Sbjct: 188 QQISLRPLCDDEMKQVISHILSDQGGADKETMEMVIQKSQGNPRKALLLTCYSGLEIVQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + AL + +A L S D + F + IL +I K A A G L + Sbjct: 248 IDSFLEQSVCNLAL--VHNLAQTLSSSDSDVKFQQFCDEILDKIQKKAIVLAEKGILTLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQ + + + + +NLD++Q I +LL K + Sbjct: 306 KKYAQTWQEIYQEIAQLQSFNLDKKQFIINLLFKVHK 342 >gi|254719071|ref|ZP_05180882.1| DNA polymerase III subunit delta' [Brucella sp. 83/13] gi|265984062|ref|ZP_06096797.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306838353|ref|ZP_07471198.1| DNA polymerase III, delta'' subunit [Brucella sp. NF 2653] gi|264662654|gb|EEZ32915.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306406493|gb|EFM62727.1| DNA polymerase III, delta'' subunit [Brucella sp. NF 2653] Length = 360 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 142/332 (42%), Positives = 197/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAKARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + LV+ YNLDRRQ + LL K Sbjct: 318 WSDLVRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|121602540|ref|YP_989110.1| DNA polymerase III subunit delta' [Bartonella bacilliformis KC583] gi|120614717|gb|ABM45318.1| DNA polymerase III, delta' subunit [Bartonella bacilliformis KC583] Length = 347 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ P+ N + GHE++ FL+Q R+HHALLFEGE+GIGKATL F +A ++L N Sbjct: 13 IEGILSPLQNNIIIGHEEVRHFLAQLRKEKRLHHALLFEGERGIGKATLAFHFAWNILSN 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S +Q+A + + +Y++ + KT K++T I++D+IR + YF Sbjct: 73 QEN-----GFLQPEYDSVIWRQIAQGSHPNLVYVARRFDSKTKKFKTGISIDDIRNMMYF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L T+ G WRV++IDP D MNRNAANA+LK+LEEPP+K LFI+I+H+S +LSTIRSRC Sbjct: 128 LKQTSRNGEWRVVIIDPADDMNRNAANAILKTLEEPPEKTLFIIITHSSRKLLSTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + SL ++ + + + + + + + + + G +A ++ Y +I + Sbjct: 188 QQVLLRSLHDDEMKQVISHIIPKQALSDEETVKMIIQKSEGRPRKAALLISYGGFEIAKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +L A+ + +A L S D I F + IL I K A A G L + Sbjct: 248 LDNLFKQSTCNLAI--VHNLAQALSSFDLDIQFQQFCDEILDRIQKKAILFAEQGALALS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQI+ ++ + + ++NLD++Q I +LL K + Sbjct: 306 KKYAQIWQNIHQEILEMQLFNLDKKQFIINLLFKIHK 342 >gi|49474219|ref|YP_032261.1| DNA polymerase III subunit delta' [Bartonella quintana str. Toulouse] gi|49239723|emb|CAF26102.1| DNA polymerase III, delta prime subunit [Bartonella quintana str. Toulouse] Length = 351 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 116/337 (34%), Positives = 178/337 (52%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N +FGHE FL+Q GR+HHAL+FEGE GIGKATL F A ++L + Sbjct: 13 IDTVLSPSQNNIIFGHEAARHFLAQMRQEGRLHHALIFEGEHGIGKATLAFHLAWNILSS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P+ S +Q+ + L++S + KT K++T I +D+IR I +F Sbjct: 73 QKGD-----FLQPESNSITWRQITQGSHPCLLHISRRFDVKTQKFKTGILIDDIRDIMHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L T+ WR+++IDP D MNR+AANA+LK+LEEPP K LFI+I+H+S +L TIRSRC Sbjct: 128 LHKTSQDNGWRIVIIDPADDMNRSAANAILKTLEEPPAKTLFIIITHSSGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L ++ + K + + + + + + GS +A ++H+ +I+ + Sbjct: 188 QQISLRPLHDDEMKKVITHVFFNQNRLNEETIKMIVQRSKGSPRKAALLIHHGGLEIVKN 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ A+ + +A L S I F IL +I K A A G L + Sbjct: 248 IDTLLEQSVCNPAI--VHTLAQTLSSLSSVIQFQQFCNEILDKIQKKAIMLAEKGNLALS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQI+ + + V +NLD++Q I +LL + + Sbjct: 306 KKYAQIWQEIHQEVEEMQSFNLDKKQFIINLLFRVHK 342 >gi|294852414|ref|ZP_06793087.1| DNA polymerase III subunit delta [Brucella sp. NVSL 07-0026] gi|294821003|gb|EFG38002.1| DNA polymerase III subunit delta [Brucella sp. NVSL 07-0026] Length = 360 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 140/332 (42%), Positives = 196/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L + L S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRTLSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|319898927|ref|YP_004159020.1| DNA polymerase III, delta prime subunit [Bartonella clarridgeiae 73] gi|319402891|emb|CBI76442.1| DNA polymerase III, delta prime subunit [Bartonella clarridgeiae 73] Length = 350 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 182/337 (54%), Gaps = 11/337 (3%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE + FL+Q GR+HHALLFEGE+GIGKATL F +A ++L + Sbjct: 13 IDGILSPSQNNILIGHEKVRHFLAQMLRKGRLHHALLFEGERGIGKATLAFHFAWNILNS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P S +Q+ + +++S+ + KT K++T ITVD+IR I++F Sbjct: 73 QKNE-----FLQPKQDSVIWRQIKQGSHPSIIHVSHRFDAKTKKFKTGITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ WR+++ID D MNRNAANA+LK+LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LNQTSQD-EWRIVIIDSADNMNRNAANAILKTLEEPPTKTLFIVISHSLGKLLPTIRSRC 186 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L+++ + KA+ + +I+ + + + GS+ +A +L + +I+ + Sbjct: 187 QKISLRPLNDDEMKKAISHVFSDQILTDQQNIETIIQKSQGSLRKAALLLCHGGLEIVQT 246 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + A L S D I F + IL I K A + Sbjct: 247 INKLLEQSICNPVI--VHNFAQSLSSSDSDIQFQQFCDEILDRIQKRAIMLIEKRAFALS 304 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQI+ ++ + + +NLD++Q I +LL K + Sbjct: 305 KKYAQIWQNIFQEIIEVQSFNLDKKQFIINLLFKTHK 341 >gi|260459471|ref|ZP_05807726.1| DNA polymerase III, delta prime subunit [Mesorhizobium opportunistum WSM2075] gi|259035025|gb|EEW36281.1| DNA polymerase III, delta prime subunit [Mesorhizobium opportunistum WSM2075] Length = 351 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 124/340 (36%), Positives = 187/340 (55%), Gaps = 4/340 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D +P RL GH L+ Y SG++ HAL+F G GIGKATL F A H+L++ Sbjct: 14 LDGVPEPSETPRLVGHRQAADMLAAAYRSGKLPHALIFAGPVGIGKATLAFHLAHHLLKH 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P F +AP + PDP SP +Q+A+ A L+L+ LN KT ++TV+TVDEIR++ F Sbjct: 74 PAFGQAPESLAVPDPASPLFRQIATGAHPGVLHLTRPLNDKTKSFKTVVTVDEIRKVSRF 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LSLT++ G +RV+++DP D MN NAANALLK+LEEPP + LF+LI HA ++L TIRSRC Sbjct: 134 LSLTSHDGSYRVVIVDPADDMNANAANALLKNLEEPPARTLFVLIVHAPGSLLPTIRSRC 193 Query: 182 LSIKFNSLSENNLYKALE--QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 ++ L + L LE + + R + A GS AI + Y +I + Sbjct: 194 QVVRLTPLDADELLAVLETAEPPPPDDPAARAALVERAGGSARNAILLTQYGGLEIARTL 253 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 L+ + + + ++A+ + +DQ I FD L + +A AALSG L A Sbjct: 254 DGLVAAGKSD--VGGAYRLAEAVAGRDQAIQFDIFNRRALDLLSDAASQAALSGDLTRAK 311 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 ++ + + + YNLD++Q ++ + + Sbjct: 312 NLSDTWHEALDAISETDTYNLDKKQHALTMIDRLNSAMRM 351 >gi|306840481|ref|ZP_07473240.1| DNA polymerase III, delta'' subunit [Brucella sp. BO2] gi|306289496|gb|EFM60714.1| DNA polymerase III, delta'' subunit [Brucella sp. BO2] Length = 360 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 141/332 (42%), Positives = 196/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D + A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNAA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTHTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISASDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYAESGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|319407219|emb|CBI80858.1| DNA polymerase III, delta prime subunit [Bartonella sp. 1-1C] Length = 351 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 177/337 (52%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE+ FL Q G +HHALLFEGE+GIGKATL F +A ++L + Sbjct: 13 IDGILPPSQNNILIGHEEARHFLEQMLREGWLHHALLFEGERGIGKATLAFHFAWNILNS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S +Q+ +++S N KT K++T ITVD+IR I++F Sbjct: 73 QKDKFS-----QPEQDSIIWRQIKQGTHPSIIHVSRRFNTKTKKFKTGITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ WR+I+ID D MN+NA NA+LK LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LNQTSQDSLWRIIIIDSADDMNKNATNAILKMLEEPPTKTLFIIISHSLGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L + + KA+ +++ + + + GS+ +A +L YD ++I + Sbjct: 188 QKISLRPLHNDEMQKAILHFFSNQVLTNPKNIETIIHKSRGSLRKAALLLCYDGLEVIQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + +A L S D +I F IL I K A G + + Sbjct: 248 INQLLEQSICNPVI--VHNLAQVLSSSDAEIQFQQFCNEILDIIHKKALKLVEEGAIHLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQ + + + + +NLD++Q + +LL K E Sbjct: 306 KKYAQTWQDIFQEMIEIQSFNLDKKQFVINLLFKIHE 342 >gi|269966017|ref|ZP_06180109.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus 40B] gi|269829413|gb|EEZ83655.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus 40B] Length = 495 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 151/359 (42%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITATPCGKCDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 AVQADIVSHMLGTIDTDQAI-HLLESISSKKPQQAMDKIQQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QVATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|17987271|ref|NP_539905.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 1 str. 16M] gi|23501874|ref|NP_698001.1| DNA polymerase III subunit delta' [Brucella suis 1330] gi|148560622|ref|YP_001258935.1| DNA polymerase III subunit delta' [Brucella ovis ATCC 25840] gi|161618947|ref|YP_001592834.1| DNA polymerase III subunit delta' [Brucella canis ATCC 23365] gi|163843262|ref|YP_001627666.1| DNA polymerase III subunit delta' [Brucella suis ATCC 23445] gi|225627471|ref|ZP_03785508.1| DNA polymerase III, delta'' subunit [Brucella ceti str. Cudo] gi|225852498|ref|YP_002732731.1| DNA polymerase III subunit delta' [Brucella melitensis ATCC 23457] gi|254689224|ref|ZP_05152478.1| DNA polymerase III subunit delta' [Brucella abortus bv. 6 str. 870] gi|254693709|ref|ZP_05155537.1| DNA polymerase III subunit delta' [Brucella abortus bv. 3 str. Tulya] gi|254701745|ref|ZP_05163573.1| DNA polymerase III subunit delta' [Brucella suis bv. 5 str. 513] gi|254704287|ref|ZP_05166115.1| DNA polymerase III subunit delta' [Brucella suis bv. 3 str. 686] gi|254706811|ref|ZP_05168639.1| DNA polymerase III subunit delta' [Brucella pinnipedialis M163/99/10] gi|254710079|ref|ZP_05171890.1| DNA polymerase III subunit delta' [Brucella pinnipedialis B2/94] gi|254714080|ref|ZP_05175891.1| DNA polymerase III subunit delta' [Brucella ceti M644/93/1] gi|254716863|ref|ZP_05178674.1| DNA polymerase III subunit delta' [Brucella ceti M13/05/1] gi|256044654|ref|ZP_05447558.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 1 str. Rev.1] gi|256061086|ref|ZP_05451241.1| DNA polymerase III subunit delta' [Brucella neotomae 5K33] gi|256159713|ref|ZP_05457460.1| DNA polymerase III subunit delta' [Brucella ceti M490/95/1] gi|256254975|ref|ZP_05460511.1| DNA polymerase III subunit delta' [Brucella ceti B1/94] gi|256257474|ref|ZP_05463010.1| DNA polymerase III subunit delta' [Brucella abortus bv. 9 str. C68] gi|256264011|ref|ZP_05466543.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|256369415|ref|YP_003106923.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|260168706|ref|ZP_05755517.1| DNA polymerase III subunit delta' [Brucella sp. F5/99] gi|260564000|ref|ZP_05834486.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|260566466|ref|ZP_05836936.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260754729|ref|ZP_05867077.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260883750|ref|ZP_05895364.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|261213981|ref|ZP_05928262.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|261218665|ref|ZP_05932946.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261222161|ref|ZP_05936442.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261314278|ref|ZP_05953475.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261317628|ref|ZP_05956825.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261321837|ref|ZP_05961034.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|261325088|ref|ZP_05964285.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261752298|ref|ZP_05996007.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261754955|ref|ZP_05998664.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|261758183|ref|ZP_06001892.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|265991078|ref|ZP_06103635.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|265998126|ref|ZP_06110683.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|297248319|ref|ZP_06932037.1| DNA polymerase III subunit delta [Brucella abortus bv. 5 str. B3196] gi|17982948|gb|AAL52169.1| DNA polymerase iii, delta' subunit [Brucella melitensis bv. 1 str. 16M] gi|23347813|gb|AAN29916.1| DNA polymerase III, delta prime subunit domain protein [Brucella suis 1330] gi|148371879|gb|ABQ61858.1| DNA polymerase III, delta prime subunit domain protein [Brucella ovis ATCC 25840] gi|161335758|gb|ABX62063.1| DNA polymerase III, delta' subunit [Brucella canis ATCC 23365] gi|163673985|gb|ABY38096.1| DNA polymerase III, delta' subunit [Brucella suis ATCC 23445] gi|225617476|gb|EEH14521.1| DNA polymerase III, delta'' subunit [Brucella ceti str. Cudo] gi|225640863|gb|ACO00777.1| DNA polymerase III, delta' subunit [Brucella melitensis ATCC 23457] gi|255999575|gb|ACU47974.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|260154016|gb|EEW89108.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|260155984|gb|EEW91064.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260674837|gb|EEX61658.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260873278|gb|EEX80347.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260915588|gb|EEX82449.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|260920745|gb|EEX87398.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|260923754|gb|EEX90322.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261294527|gb|EEX98023.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|261296851|gb|EEY00348.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261301068|gb|EEY04565.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261303304|gb|EEY06801.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261738167|gb|EEY26163.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|261742051|gb|EEY29977.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261744708|gb|EEY32634.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|262552594|gb|EEZ08584.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|263001862|gb|EEZ14437.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|263094154|gb|EEZ18076.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|297175488|gb|EFH34835.1| DNA polymerase III subunit delta [Brucella abortus bv. 5 str. B3196] gi|326409014|gb|ADZ66079.1| DNA polymerase III subunit delta' [Brucella melitensis M28] gi|326538724|gb|ADZ86939.1| DNA polymerase III, delta' subunit [Brucella melitensis M5-90] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 141/332 (42%), Positives = 197/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|62289917|ref|YP_221710.1| DNA polymerase III subunit delta' [Brucella abortus bv. 1 str. 9-941] gi|82699844|ref|YP_414418.1| DNA polymerase III subunit delta' [Brucella melitensis biovar Abortus 2308] gi|189024160|ref|YP_001934928.1| Replication factor C conserved domain protein [Brucella abortus S19] gi|237815419|ref|ZP_04594417.1| DNA polymerase III, delta' subunit [Brucella abortus str. 2308 A] gi|254697359|ref|ZP_05159187.1| DNA polymerase III subunit delta' [Brucella abortus bv. 2 str. 86/8/59] gi|254730257|ref|ZP_05188835.1| DNA polymerase III subunit delta' [Brucella abortus bv. 4 str. 292] gi|260545334|ref|ZP_05821075.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260757952|ref|ZP_05870300.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260761775|ref|ZP_05874118.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|62196049|gb|AAX74349.1| DNA polymerase III, delta prime subunit domain protein [Brucella abortus bv. 1 str. 9-941] gi|82615945|emb|CAJ10968.1| Replication factor C conserved domain [Brucella melitensis biovar Abortus 2308] gi|189019732|gb|ACD72454.1| Replication factor C conserved domain protein [Brucella abortus S19] gi|237790256|gb|EEP64466.1| DNA polymerase III, delta' subunit [Brucella abortus str. 2308 A] gi|260096741|gb|EEW80616.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260668270|gb|EEX55210.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260672207|gb|EEX59028.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 141/332 (42%), Positives = 197/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQSVVILLEKTHRA 349 >gi|256113540|ref|ZP_05454366.1| DNA polymerase III subunit delta' [Brucella melitensis bv. 3 str. Ether] gi|265994913|ref|ZP_06107470.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|262766026|gb|EEZ11815.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] Length = 360 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 141/332 (42%), Positives = 197/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEEPP + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISETVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARCYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|260365299|ref|ZP_05777856.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus K5030] gi|308115467|gb|EFO53007.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus K5030] Length = 639 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 149/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+ Q+A + +D L++ Sbjct: 231 AVQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 I ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QIATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|319404209|emb|CBI77802.1| DNA polymerase III, delta prime subunit [Bartonella rochalimae ATCC BAA-1498] Length = 351 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 10/336 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE+ FL Q GR++HALLFEGE+GIGKATL F +A ++L + Sbjct: 13 IDGILSPSQNNILIGHEEARHFLEQMLREGRLYHALLFEGERGIGKATLAFHFAWNILNS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P+ S +Q+ + +++S N KT K++T ITVD+IR I++F Sbjct: 73 QKD-----KFLQPEQDSIIWRQIKQGSHPSIIHVSRRFNTKTKKFKTGITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ WR+I+ID D MN+NA NA+LK LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LNQTSQDSLWRIIIIDSADDMNKNATNAILKMLEEPPTKTLFIIISHSLGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L ++ + KA+ +++ + + + GS+ +A +L YD ++I + Sbjct: 188 QKISLRPLHKDEMQKAISHFFSNQVLTNPQNIETIIHKSRGSLRKAALLLCYDELEVIQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + A L S D +I F IL I K A G + + Sbjct: 248 INQLLEQSICNPVI--VHNFAQALSSSDAEIQFQQFCNEILDIIHKKALKLVEEGAIHLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + AQ++ ++ + + +NLD++Q + +LL K Sbjct: 306 KKYAQMWQNIFQAMIEMQSFNLDKKQFVINLLFKIH 341 >gi|319405649|emb|CBI79272.1| DNA polymerase III, delta prime subunit [Bartonella sp. AR 15-3] Length = 351 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 178/337 (52%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N L GHE++ FL Q G++HHALLFEGE+GIGKATL F A ++L + Sbjct: 13 IDGILSPSQNNTLIGHEEVRHFLGQMLREGQLHHALLFEGERGIGKATLAFHLAWNILNS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P S +Q+ + +++S N KT K++T ITVD+IR I++F Sbjct: 73 QKN-----KFLQPGQDSIIWRQIKQGSHPGIIHVSRRFNVKTKKFKTEITVDDIRDIKHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L+ T+ G WR+I+ID D MNRNAANALLK+LEEPP K LFI+ISH+ +L TIRSRC Sbjct: 128 LTQTSRDGLWRIIIIDSADDMNRNAANALLKTLEEPPTKTLFIIISHSLGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW---DSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I L +N + KA+ + + + GS+ +A +L + +II + Sbjct: 188 QKISLRPLHDNEMQKAILHFFPNQELINPQNIETIIQKSQGSLRKAALLLCHGGLEIIQT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ + + +A L D I F + IL I K A G + + Sbjct: 248 INKLLEQSICDPVI--AHNLAQALSLSDTDIQFQQFCDEILDRIHKKAIMLLKEGAIHLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A+ + ++ + + +NLD++Q + +LL K E Sbjct: 306 KKYAETWQNVFQEIIEIQSFNLDKKQFVINLLFKTHE 342 >gi|240850632|ref|YP_002972032.1| DNA polymerase III subunit delta' [Bartonella grahamii as4aup] gi|240267755|gb|ACS51343.1| DNA polymerase III subunit delta' [Bartonella grahamii as4aup] Length = 347 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 115/337 (34%), Positives = 180/337 (53%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N +FGHED+ FL+Q R+HHALLFEGE GIGKATL F A ++L + Sbjct: 13 IDTILSPSQNDVVFGHEDVRHFLTQMLKEERLHHALLFEGEYGIGKATLAFHLAWNILSS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PDP S +Q+ + LY+S + KT K++T I VD++R I +F Sbjct: 73 QQDA-----FLKPDPYSTPWRQITQGSHPGLLYISRRFDVKTQKFKTGILVDDVRDIMHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS T+ WR+++ID D MNRNAANA+LK LEEPP K LF++I+H+S +L TI SRC Sbjct: 128 LSRTSQDNGWRIVIIDSADDMNRNAANAILKILEEPPSKTLFVIIAHSSGKLLPTIHSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I F L+ + + K + + + + + + + + GS +A ++ +D +II + Sbjct: 188 QKISFRPLNNDEMKKVIIHIFANQNLPDEKTIEIIIKKSKGSPRKAALLICHDGLEIIKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ P + + +A S F + IL +I K A G L + Sbjct: 248 IDVLLEKPVCNATI--VHTLAQTFSSVSSTFQFQQFCDEILNKIQKKAIMLVEKGDLFLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A+ + + + + ++NLD++Q + +LL K + Sbjct: 306 KKYAEKWQEIHQEIEEIQLFNLDKKQFVINLLFKVHK 342 >gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552] gi|169291842|gb|EDS73975.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552] Length = 593 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 133/335 (39%), Gaps = 38/335 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P + G E I L R+ HA LF G +G GK T+ A + Sbjct: 6 LYRSYRPQTFDEVAGQEHIVTTLKNAIKENRIAHAYLFAGPRGTGKTTVAKLLAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P C P K + + D + + + N VDE+R + Sbjct: 66 GD--NPPCDNC------PNCKAITASQHPDVIEIDAASNN---------GVDEVRDLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M++ A NALLK+LEEPP ++FIL + IL TI SRC Sbjct: 109 VKYAPINGKYKVYIIDEVHMMSQGAFNALLKTLEEPPAHIIFILATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + ++ LE V A G + A+ IL Sbjct: 169 QRFDFKKVDDQDIVSRLEYVLKNENKEYELDALKLVAKLAEGGMRDALSILEQCL----- 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y D + I LLS D KI F I+ +L + KS +L L Sbjct: 224 AYNDKLSIDSVNKVYG--------LLSMDNKIIF---IKKLLSQDLKSV-LQSLDNMLST 271 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + I ++ + L+ + +Y + I +L++ Sbjct: 272 SIDIKRLTYDLIDVLKDVIIYKNTQDASILFVLTQ 306 >gi|110633934|ref|YP_674142.1| DNA polymerase III subunit delta' [Mesorhizobium sp. BNC1] gi|110284918|gb|ABG62977.1| DNA polymerase III, delta prime subunit [Chelativorans sp. BNC1] Length = 354 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 117/331 (35%), Positives = 181/331 (54%), Gaps = 4/331 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P N L GHE+ L+ Y +G++HHALLF G GIGKATL F A H+ NPD Sbjct: 19 PPENPLLVGHENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRLG 78 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P+ + D S + A A L+L+ + K++TVITVDEIRR+ FLSLT Sbjct: 79 PLDFSDIDTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSLTPP 138 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G +RV+++DP D MN NAANALLK+LEEPP + +FILI+H+ +L TIRSRC K + Sbjct: 139 DGGYRVVIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKLD 198 Query: 188 SLSENNLYKALEQLKI--MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 LS L K L+ L + +R + A GS AI + + +I + +L+ Sbjct: 199 PLSPGLLEKLLQSLGASLPETEEERRLLIQRAQGSARDAILLTEFGGLEIEQAIENLLEQ 258 Query: 246 PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIY 305 R + + ++A+ +++++ FD +L + +A +A +G + +A++ A + Sbjct: 259 RR--FDVPAAYKLAEAATGRERQVQFDLFNRAVLDRVANAASHSASAGDIAQAERFANFW 316 Query: 306 FSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L + + ++NLDR+Q + L++ Sbjct: 317 EELAETIRQVEIFNLDRKQHVVSSLNRLHNA 347 >gi|91223616|ref|ZP_01258881.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus 12G01] gi|91191702|gb|EAS77966.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus 12G01] Length = 701 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 152/359 (42%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITATPCGKCDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 AVQADIVSHMLGTIDTDQAI-HLLESISSKKPQQAMDKIQQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++A A+ L K + + Q+ + + K RE Sbjct: 284 QVATQLHRIAMYQALPASLDQAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|260900002|ref|ZP_05908397.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus AQ4037] gi|308107292|gb|EFO44832.1| putative DNA polymerase III, gamma/tau subunit [Vibrio parahaemolyticus AQ4037] Length = 711 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 149/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQKHVLTALENALAQNRIHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+ Q+A + +D L++ Sbjct: 231 AVQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 I ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QIATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|28898953|ref|NP_798558.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus RIMD 2210633] gi|153838686|ref|ZP_01991353.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810] gi|260878849|ref|ZP_05891204.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034] gi|260896229|ref|ZP_05904725.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466] gi|28807172|dbj|BAC60442.1| DNA polymerase III, subunits gamma and tau [Vibrio parahaemolyticus RIMD 2210633] gi|149747906|gb|EDM58778.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810] gi|308088878|gb|EFO38573.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466] gi|308094301|gb|EFO43996.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034] Length = 711 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 149/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+ Q+A + +D L++ Sbjct: 231 AVQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 I ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QIATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|328474507|gb|EGF45312.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 10329] Length = 711 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 149/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+ Q+A + +D L++ Sbjct: 231 AVQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIHQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 I ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QIATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|254228481|ref|ZP_04921907.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp. Ex25] gi|262393658|ref|YP_003285512.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25] gi|151939069|gb|EDN57901.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp. Ex25] gi|262337252|gb|ACY51047.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25] Length = 701 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 151/359 (42%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNQFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITATPCGKCDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ Q ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 AVQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLA------ANGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QVATQLHRIAMYQALPASLDRAQPDAEKIELLSKALSPQDV------QLYYQIALKGRE 336 >gi|289435979|ref|YP_003465851.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 578 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIIQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE + KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQGLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|260776402|ref|ZP_05885297.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus ATCC BAA-450] gi|260607625|gb|EEX33890.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus ATCC BAA-450] Length = 694 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFNEVVGQRHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ +++ D L + + K V++ R + Sbjct: 66 TGITATPCGICDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S +N+++ L+ + ++ + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIHEQLDHILKHEQVSSEPRALGMIAHAADGSMRDALSLSDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIA--------DELLSQDQ-KIAFDFLIEFILKEIC 283 + S ++ + AL ++ I+ D L + Q + +D L++ + ++ Sbjct: 231 QVLADSVAHMLGTLDTDQALHLLEAISSKQPQVAMDSLSALAQNGVEWDGLLQQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A AL L++A A+ L + + + Q+ + + K R+ Sbjct: 291 RLAMYQALPATLDKAQPDAEKVELLSRALAPQDV------QLYYQIALKGRQ 336 >gi|167755136|ref|ZP_02427263.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402] gi|167705186|gb|EDS19765.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402] Length = 640 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 38/335 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P + G E I L R+ HA LF G +G GK T+ A + Sbjct: 6 LYRSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P K + D + + + N VDE+R + Sbjct: 66 --GENPPCDQC------PNCKAITVGEHPDVIEIDAASNN---------GVDEVRDLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP ++F+L + IL TI SRC Sbjct: 109 VKYAPINGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +++ LE S + V A G + A+ IL Sbjct: 169 QRFDFKKVENHDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCL----- 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + + + LLS D KI+F + + + K+I +L L Sbjct: 224 AYNNELTVESVNMVYG--------LLSMDNKISF--IKQLLSKDI--KGVLTSLDNMLSG 271 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + I ++ F LV + +Y + I +L++ Sbjct: 272 SIDIKRLTFDLVDVLKDIIIYKNTQDVSILFVLTQ 306 >gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL J2-003] Length = 446 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 129/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 ++ L+ +Y Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ 296 >gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989] gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989] Length = 587 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 35/302 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L R+ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAKTLNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP +C K A+ + D + + + N VDE+R + Sbjct: 66 -NSQDAPCGVCEN------CKMAANGSHPDIIEIDAASNN---------GVDEVRNLIDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V M A NALLK++EEPP V+FI + +L TI SRC Sbjct: 110 VKYAPMQGKYKIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN +S N++ L + I + A G + A+ IL D+ ++ Sbjct: 170 QRFDFNKVSVNDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSIL----DQCVA 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL----IEFILKEICKSAKAAALSG 293 I + +++I + S+D F + ++ +K+I K + Sbjct: 226 YCTSHIDVND-------IRKIYGVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIK 278 Query: 294 QL 295 +L Sbjct: 279 RL 280 >gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262] gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262] Length = 579 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 86/358 (24%), Positives = 142/358 (39%), Gaps = 43/358 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN--------LDRRQMIFHLLSKARECNDLYFRDFYAI 347 ++ L+ +Y L+R + ++ A+ + L +F I Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDEDFVALAKRADSLKVYEFVKI 332 >gi|237733438|ref|ZP_04563919.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383473|gb|EEO33564.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 640 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 131/335 (39%), Gaps = 38/335 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P + G E I L R+ HA LF G +G GK T+ A + Sbjct: 6 LYRSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P K + D + + + N VDE+R + Sbjct: 66 --GENPPCDQC------PNCKAITVGEHPDVIEIDAASNN---------GVDEVRDLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP ++F+L + IL TI SRC Sbjct: 109 VKYAPINGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +++ LE + V A G + A+ IL Sbjct: 169 QRFDFKKVENHDIISRLEYVLKSENKKYELPALESVAKLAEGGMRDALSILEQCL----- 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + + + LLS D KI+F + + + K+I +L L Sbjct: 224 AYNNELTVESVNMVYG--------LLSMDNKISF--IKQLLSKDI--KGVLTSLDNMLSG 271 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + I ++ F LV + +Y + I +L++ Sbjct: 272 SIDIKRLTFDLVDVLKDIIIYKNTQDVSILFVLTQ 306 >gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J1-175] gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] Length = 579 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 220] Length = 579 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|46908883|ref|YP_015272.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b F2365] gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes Clip81459] gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes serotype 4b str. F2365] gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 579 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + + AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---DDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|86148367|ref|ZP_01066660.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222] gi|85833850|gb|EAQ52015.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222] Length = 758 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 148/352 (42%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITSTPCGEC------ATCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S +N+++ LEQ + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEIC 283 + + + ++ + A+ ++ I+ + Q + + +D L+ + ++ Sbjct: 231 NVVTDTVAHMLGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A AL L++A A+ L K + + Q+ + ++ K R+ Sbjct: 291 RLAMYQALPSTLDKAQPDAERLELLSKTLSPQDI------QLYYQIVLKGRQ 336 >gi|254830860|ref|ZP_05235515.1| hypothetical protein Lmon1_05849 [Listeria monocytogenes 10403S] Length = 579 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|116874071|ref|YP_850852.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] Length = 579 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e] gi|224499379|ref|ZP_03667728.1| hypothetical protein LmonF1_06652 [Listeria monocytogenes Finland 1988] gi|224502886|ref|ZP_03671193.1| hypothetical protein LmonFR_10254 [Listeria monocytogenes FSL R2-561] gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165] gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28] gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e] gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165] gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] Length = 579 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 129/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 ++ L+ +Y Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ 296 >gi|224541626|ref|ZP_03682165.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM 15897] gi|224525464|gb|EEF94569.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM 15897] Length = 600 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 37/335 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L ++ HA LF G +G GK T+ A V Sbjct: 8 LYRTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLAKAVNCT 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C KQ+ + D + + + N V+E+R + Sbjct: 68 GNP--KPCGECEN------CKQIENGTHPDVIEIDAASNN---------GVEEVRSLIDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 111 VKYAPTQGQYKVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F L++ + + L++ D + + A G + A+ IL ++ ++ Sbjct: 171 QRFDFTRLTDQEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSIL----EQCLA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + I + I + D+ L+ + E K SG Sbjct: 227 YNDDHLSIND-------IHTIYGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGI--- 276 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 I ++ F L+ + +Y + I ++++ Sbjct: 277 --DIKRLTFDLIDILKDIVVYRNTKDASIMSVMTQ 309 >gi|304391676|ref|ZP_07373618.1| DNA polymerase III subunit delta' [Ahrensia sp. R2A130] gi|303295905|gb|EFL90263.1| DNA polymerase III subunit delta' [Ahrensia sp. R2A130] Length = 351 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 100/328 (30%), Positives = 167/328 (50%), Gaps = 3/328 (0%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P ++ + GH+ L+ + +GR+HHA + G +G+GK+TL +A H+ +P + A Sbjct: 19 PAASRSVVGHDGAMSQLTSAHRAGRLHHAWMISGPRGVGKSTLALNFAKHLFAHPAGAHA 78 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P ++ + + L+L+ +PK +++T ++VDEIRR F +TA Sbjct: 79 PEAFDGGSISDALHGSVSQGSHNQLLHLTRPWDPKGERFKTQLSVDEIRRTVPFYGMTAG 138 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G +RV +ID D MN +AANA+LK LEEPP K +F +++HA ++L TIRSRC + + Sbjct: 139 GGGYRVTIIDAADDMNTSAANAVLKMLEEPPAKSIFFVLAHAPGSLLPTIRSRCRVLPLD 198 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPR 247 LS N+ L + + G A GSV RAI++ D K S + L+ P+ Sbjct: 199 PLSPENISSILNTVSLDGAGEGSGDAARLAQGSVRRAIQLQQGDVLKFYSQFESLMKQPK 258 Query: 248 QEYALQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIY 305 A + +AD L + + A+D IE +L I + + + + A ++ Sbjct: 259 PGEARDWVAVHMLADNLSKRGGEAAYDLFIELVLDWIASRVRENP-NVPVAWMARWADLH 317 Query: 306 FSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + V YNLD++Q++ +L S Sbjct: 318 TKVRDAVRLAGAYNLDKKQVLLNLFSDL 345 >gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|254899839|ref|ZP_05259763.1| hypothetical protein LmonJ_08496 [Listeria monocytogenes J0161] gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900] gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900] gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 579 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|84394297|ref|ZP_00993021.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01] gi|84375065|gb|EAP91988.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01] Length = 632 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 148/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +N+++ LEQ + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDNIHEQLDHILEQENVTSESRALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ +Q +A+ + +D L+ Sbjct: 231 NVVTDTVAHMLGTLDTDQAI-HLLEAISSKQPQLAMACIQALAE------NGVEWDGLLS 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++A A+ L K + + Q+ + ++ K R+ Sbjct: 284 QLAAQLHRLAMYQALPSTLDKAQPDAERLDLLSKALSPQDI------QLYYQIVLKGRQ 336 >gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes L99] Length = 580 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071] gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071] Length = 580 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 1816] Length = 579 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVAV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] Length = 579 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D L + + N V+EIR IR Sbjct: 66 HGHDGEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ LE+ KI + V AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDIIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 227 YGSEEVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ L+ +Y + + L +A Sbjct: 275 GKDPVRLVEDLLVFFRDVLLYQ--KAPNLEETLERA 308 >gi|261252406|ref|ZP_05944979.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP 102891] gi|260935797|gb|EEX91786.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP 102891] Length = 706 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K++ D L + + K V++ R + Sbjct: 66 TGITANPCGTCDT------CKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S + +++ L+ + ++ + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDTIHEQLDHILKEEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK---------IAFDFLIEFILKEIC 283 I S ++ + AL ++ I+ + + + +D L++ + ++ Sbjct: 231 QVITDSVAHMLGTLDTDQALHLLEAISSKQAQTAMECISALAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A AL L++A A+ L + + + Q+ + + K RE Sbjct: 291 RLAMYQALPATLDQAQPDAEKIELLSRALSPQDV------QLYYQIALKGRE 336 >gi|148977687|ref|ZP_01814248.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium SWAT-3] gi|145963055|gb|EDK28324.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium SWAT-3] Length = 747 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 149/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K +++ R + Sbjct: 66 TGITSTPCGEC------ATCKEIDEGRFVDLLEIDAASRTK---------LEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +N+++ LEQ K+ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDNIHEQLDHILEQEKVTSESRALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ +Q +A+ + +D L+ Sbjct: 231 NVVTDTVAHMLGTLDTDQAI-HLLEAISSKQPQEAMACIQNLAE------NGVEWDGLLN 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++A A+ L K + + Q+ + ++ K RE Sbjct: 284 QLAAQLHRLAMYQALPSTLDKAQPDAEKLELLSKALSPQDI------QLYYQIVLKGRE 336 >gi|218708914|ref|YP_002416535.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus LGP32] gi|218321933|emb|CAV17928.1| DNA polymerase III subunit tau [Vibrio splendidus LGP32] Length = 752 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 148/352 (42%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITSTPCGEC------ATCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S +N+++ LEQ + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEIC 283 + + + ++ + A+ ++ I+ + Q + + +D L+ + ++ Sbjct: 231 NVVTDTVAHMLGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A AL L++A A+ + K + + Q+ + ++ K R+ Sbjct: 291 RLAMYQALPSTLDKAQPDAERLELMSKTLSPQDI------QLYYQIVLKGRQ 336 >gi|256031575|ref|ZP_05445189.1| DNA polymerase III subunit delta' [Brucella pinnipedialis M292/94/1] gi|265988663|ref|ZP_06101220.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|264660860|gb|EEZ31121.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] Length = 360 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 140/332 (42%), Positives = 196/332 (59%), Gaps = 5/332 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P + L GH++I +FL+Q Y GRMHHALLFEG QGIGKATL F AGH+L D ++A Sbjct: 20 PSASAYLAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEA 79 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P + PD P +Q+A L+++ + KTGK+RT ITV+EIRR+ +FL+ TA+ Sbjct: 80 PETLIAPDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTAS 139 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR++++DP D MNRNAANALLK+LEE P + LFILISH+S +L TIRSRC SI F Sbjct: 140 DHAWRIVIVDPADDMNRNAANALLKTLEELPARALFILISHSSGRLLPTIRSRCQSISFK 199 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L L +AL S D + + GSV +A+ +L + + IS +D I Sbjct: 200 PLDGETLGRALSHAGSKAGISAGDITEVLLQRSEGSVRKALLLLAHGGLE-ISDTVDQI- 257 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 I + L K Q + L ++ ++ ++ ++++ I A+ A SGQL EADQ A+ Sbjct: 258 IAGSIFDLPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARF 317 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + L++ YNLDRRQ + LL K Sbjct: 318 WSDLIRETVEAETYNLDRRQAVVILLEKTHRA 349 >gi|77360144|ref|YP_339719.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas haloplanktis TAC125] gi|76875055|emb|CAI86276.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas haloplanktis TAC125] Length = 842 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 39/356 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C+ K + + D L + + K V++ R I Sbjct: 65 DEGISANPCGQCSS------CKDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL N+LS++ + LE K+ D + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLNALSQSEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I+ + L M Q + LL+QD L++ + ++ AL Sbjct: 226 AQTNGDINNQAVQTMLGLMDTHYSQSLLAALLAQDGAA----LMKEVANVASRNPNYVAL 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 L + Q+ LV A N D ++ A+ N + +Y + Sbjct: 282 LDDLIALTHLTQL-SQLVPEAAALDETNAD------YITHVAQNTNPQQIQIYYQL 330 >gi|197302301|ref|ZP_03167360.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC 29176] gi|197298732|gb|EDY33273.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC 29176] Length = 522 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 142/352 (40%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPAEFEDVKGQEHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K +A+ + + + + N VD IR IR Sbjct: 66 HPVNGSPCGEC------AMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + +++L +I D ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITARMQELMDTEQIEVEDKALRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 Y+ D + ++ ++ ++ D + E +++ + Sbjct: 227 FYLGQKLTYDHVLEVLGAVDTDVFSKLLRNVIGRNVAAVLDIVEELVMQGRELTQLVGDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L + + + + ++++ M LD + S+ Sbjct: 287 TWYLRNLLLVKTSDNIEDVLDVSTENMMQLKEESDMIELDMLLRYIRVFSEL 338 >gi|163868323|ref|YP_001609532.1| DNA polymerase III subunit delta' [Bartonella tribocorum CIP 105476] gi|161017979|emb|CAK01537.1| DNA polymerase III, delta prime subunit [Bartonella tribocorum CIP 105476] Length = 347 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 113/337 (33%), Positives = 177/337 (52%), Gaps = 10/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID P N FGHED+ FL+Q R+HHALLFEGE GIGKATL F A ++L + Sbjct: 13 IDTILSPSQNNISFGHEDVRHFLTQMLKEERLHHALLFEGEYGIGKATLAFHLAWNILSS 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PD S +Q+ + LY+S + KT K++T I +D+IR I +F Sbjct: 73 QKGA-----FLKPDLHSVTWRQITQGSHPGLLYISRRFDVKTQKFKTGILIDDIRDITHF 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 LS T+ WR+++ID D MNRNAANA+LK LEEPP K LFI+I+H+S +L TIRSRC Sbjct: 128 LSRTSQDNGWRIVIIDAADDMNRNAANAILKILEEPPAKALFIIIAHSSGKLLPTIRSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 I F L+ + + K + + + + + + + + GS +A ++ + +II + Sbjct: 188 QKISFRPLNHDEMKKVITHIFTNQDLPDEKTIEMIIKKSKGSPRKAALLICHGGLEIIKT 247 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 L+ P + + +A S F + IL +I + A L + Sbjct: 248 IDALLKQPACNATI--VHTLAQTFSSVSSPFQFQQFCDEILDKIQQKAITLVEKENLFLS 305 Query: 299 DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AQ + + + + ++NLD++Q + +LL + + Sbjct: 306 KKYAQKWQEIHREIEEVQVFNLDKKQFVINLLFRVHK 342 >gi|257062978|ref|YP_003142650.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens DSM 20476] gi|256790631|gb|ACV21301.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens DSM 20476] Length = 807 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 71/352 (20%), Positives = 132/352 (37%), Gaps = 37/352 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G +E+ L + HA LF G +G GK T+ A +L Sbjct: 5 LYRKYRPQTFDDVVGQTHVERTLKNALQQDHVSHAYLFCGPRGTGKTTMARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + +P C + +A A D L + VD +R I Sbjct: 65 HGPTPSPDGTCEE------CQLIAEGAHPDVNELDAASRT---------GVDNVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V + A NALLK+LEEPP V+F++ + I TI SR Sbjct: 110 RVQFAPTRGRYKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDC 232 C F+ LS + L + D + A G + A+ +++ + Sbjct: 170 CQRFDFHRLSNEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAFGA 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEIC 283 + +D+ + + M +IA + +D F ++ E++ +++ Sbjct: 230 GNVT---MDVANAALGSLDVNDMSEIAGHIGRRDAAACFTWMAEYVETGADLAQFARDLA 286 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHA-FSMYNLDRRQMIFHLLSKAR 334 + + + A ++ S +++ +Y DR I +L Sbjct: 287 SYVRDMYVFSLTDGAVGLSSASSSNQQQLAEDAKLYGTDRLAYILDVLGDLN 338 >gi|89073484|ref|ZP_01160007.1| DNA polymerase III subunits gamma and tau [Photobacterium sp. SKA34] gi|89050748|gb|EAR56229.1| DNA polymerase III subunits gamma and tau [Photobacterium sp. SKA34] Length = 737 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 134/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + LE + K+ + AA GS+ A+ + + Sbjct: 170 CLQFHLKHLDHQQIQTQLEKVLTEEKVEYEAKALSLLARAAEGSMRDALSLTDQAIALGN 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEI 282 ++ I + ++ + AL ++ +A + + + +D L+ + ++ Sbjct: 230 GQVGIDNVATMLGTLDTDQALFLLEAVAQANANIAMNSLQELANIGVEWDSLLRELASQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L++A A+ L + + Sbjct: 290 HRVAMYQALPASLDDALPDAERISLLSQLM 319 >gi|284049060|ref|YP_003399399.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] Length = 671 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 141/340 (41%), Gaps = 39/340 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I+K L+ +GR+ HA LF G +G GK + A + Sbjct: 6 LYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D + + + N +DEIR++R Sbjct: 66 KGPTAHPCNQCSN------CREITEGTCGDVVEIDAASNR---------GIDEIRKLREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + +A NALLK+LEEPP+ V+FIL + IL+TI SRC Sbjct: 111 VYFAPTSCRYKVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + + LE++ I + I A G + A+ +L Sbjct: 171 QRFDFRRATVDEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMASP 230 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + +K++++ + ++ A D AL LE+ Sbjct: 231 VTAETVRQVLGLVGREKLRELVTRIGQKNLSGALD-----------------ALGQLLEQ 273 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRR-QMIFHLLSKAREC 336 ++ QI L++ A +Y DR Q I+ L+ RE Sbjct: 274 GKEMEQILAELLEYFRALLLYQADREYQEIY--LTDTREA 311 >gi|254506937|ref|ZP_05119076.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 16] gi|219550222|gb|EED27208.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus 16] Length = 712 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 138/329 (41%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFTEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITSTPCGQC------ATCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S + +++ L+ + ++ + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDTIHEQLDHILAKEQVTSEARALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA---------FDFLIEFILKEIC 283 + S ++ + AL ++ I+ + Q ++ +D L++ + ++ Sbjct: 231 TVLTDSVAHMLGTLDTDQALHLLEAISSKQPQQAMEMVTQLAQNGVEWDGLLQQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L++A A+ L + + Sbjct: 291 RMAMFQALPSTLDKAQPDAEKIELLSRAL 319 >gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 628 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 36/326 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I K L+ SGR+ HA LF G +G GK + A + Sbjct: 6 LYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D + + + N +DEIR++R Sbjct: 66 KGPTPHPCNTCDH------CREITEGTSADVIEIDAASNR---------GIDEIRKLREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + +A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VHFAPVSSRYKVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ L+++ I + I A G + A+ +L Sbjct: 171 QRFDFRRVTVDDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMANP 230 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + M+ + +++ +D A D L + + Sbjct: 231 VTAETVRQVLGIAGRDTMRALVEKIGRRDLPAALDLLNQLMDD----------------- 273 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRR 323 + Q+ L++ + A +Y D Sbjct: 274 GKDVTQVLTELLEYMRALLLYQADPA 299 >gi|319936700|ref|ZP_08011113.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808257|gb|EFW04822.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 619 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 116/285 (40%), Gaps = 30/285 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L ++ HA LF G +G GK T+ A + Sbjct: 6 LYRVYRPQRFDEVAGQEHIITTLRHAVEENKIAHAYLFCGPRGTGKTTIAKLLAKAINCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++AS D + + + N VDE+R + Sbjct: 66 GNP--KPCDECEN------CKEIASGNHPDVIEIDAASNN---------GVDEVRNLIDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP V+FIL + IL TI SRC Sbjct: 109 VKYAPTQGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHVVFILATTEPHKILPTIISRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F LS + + EQ + D + + A G + A+ IL ++ ++ Sbjct: 169 QRFDFMKLSLTEIVNRMKSVVEQENYICDDEALEMIAKLADGGMRDALSIL----EQCLA 224 Query: 238 SYIDLIHIPRQEY-----ALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +L+ LLS+D K + L E Sbjct: 225 YNDQHLTVQDVNHIYGIVSLENKIDFIKVLLSKDMKKSLFILDEM 269 >gi|302035663|ref|YP_003795985.1| DNA polymerase III subunit gamma/tau [Candidatus Nitrospira defluvii] gi|300603727|emb|CBK40058.1| DNA polymerase III, gamma and tau subunits [Candidatus Nitrospira defluvii] Length = 625 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 72/361 (19%), Positives = 148/361 (40%), Gaps = 41/361 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + L + R+ HA LF G +G+GK T+ A + Sbjct: 5 VSARKYRPGTFDDVIGQSHVVQTLMNSIATKRIAHAFLFSGTRGVGKTTVARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + N +VD++R IR Sbjct: 65 EQGPTGTPCNTCAN------CREITQGTSVDVVEIDGASNT---------SVDDVREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T G +RV +ID V ++ +A NALLK+LEEPP V+FI + I +TI SR Sbjct: 110 NVKFTPFRGQYRVYIIDEVHMLSNSAFNALLKTLEEPPSHVVFIFATTEIHKIPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S+ + + L + + D + A+ GS+ + +L D+II Sbjct: 170 CQHYNFRRISKAEIVQRLRHVADQDGLTIEDRSLMALARASEGSMRDGLSLL----DQII 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 + + I E L ++++ + + ++ QD A + + + ++ Sbjct: 226 AFGGNTIRHEDLETLLGAVPQERIRAMVEAVIQQDSAKALQVIAALLDQGHDVRAYCADL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIY----FSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + + ++ + ++ + L + + +++ Q +F + + A + Sbjct: 286 VEYVRNMLVAAVVPSGPELRSLIEATEEDLTQLARDAERFTVEQLQELFRMYAAAEDSLR 345 Query: 339 L 339 + Sbjct: 346 V 346 >gi|154484288|ref|ZP_02026736.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC 27560] gi|149734765|gb|EDM50682.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC 27560] Length = 541 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 142/354 (40%), Gaps = 41/354 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P ++ G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 21 LYRKFRPSTFDQVKGQDHIVQTLKNQINANRIGHAYLFCGTRGTGKTSVAKIFAKAVNCE 80 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + + + + + + + N VD IR+IR Sbjct: 81 HPVDGSPCNEC------ETCRGITNGSAMNVIEIDAASNN---------GVDNIRQIRDE 125 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++G + V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 126 IQYSPSSGKYTVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRC 185 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDC 232 F +S + + L E+ I D +V AA GS+ A+ +L Y Sbjct: 186 QRYDFKRISIDTIAARLSELMEKESIEVEDKAIRYVAKAADGSMRDALSLLDQCIAFYLG 245 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----------- 280 K+ + +D++ E + +++ D D + + L E I++ Sbjct: 246 QKLTYDNVLDVLGAVDNEIFSRLTRRVIDS----DVTTSLNILDEIIMQGREPGQFVNDF 301 Query: 281 -EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 ++ S E + I + M N+D +LS+ Sbjct: 302 IWYLRNLMLIKTSDDDEIMEVIDASAERIEALKEEAQMVNVDVIMRYIRILSEL 355 >gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL F2-515] Length = 289 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 35/318 (11%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F P Q + G E + K L + HA LF G +G GK + +A + Sbjct: 1 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHD 60 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C K ++ D L + + N V+EIR IR + Sbjct: 61 GEPCNEC------EICKGTTDGSIPDVLEIDAASNN---------GVEEIRDIREKVKYA 105 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 106 PTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFD 165 Query: 186 FNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++ ++ LE+ KI + V AA G + A+ +L D++IS + Sbjct: 166 FKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYGSE 221 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + + E AL+ +A LL++ AFD + + L+ L E Sbjct: 222 EVTV---EDALEITGSVAQNLLTKLVSAAFDG---------DAAEAISTLTALLAEGKDP 269 Query: 302 AQIYFSLVKRVHAFSMYN 319 ++ L+ +Y Sbjct: 270 VRLVEDLLVFFRDVLLYQ 287 >gi|315126896|ref|YP_004068899.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas sp. SM9913] gi|315015410|gb|ADT68748.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas sp. SM9913] Length = 777 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALNQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C+ + + D L + + K V++ R I Sbjct: 65 DEGISATPCGQCSS------CVDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL N+LS+ + + LE Q ++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLNALSQAEIKQQLEHVLTQEQLNFDNDALSIIAKAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I+ + L M Q + LL+QD L+ + + ++ AL Sbjct: 226 AQTNGDINNQAVQAMLGLMDTHYSQSLLAALLAQDGAA----LMAEVAQVASRNPNYIAL 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLD 321 L I Q+ LV A N D Sbjct: 282 LDDLIALTHIIQL-SQLVPEAAALDSNNAD 310 >gi|76808592|ref|YP_333768.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 1710b] gi|254259031|ref|ZP_04950085.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1710a] gi|76578045|gb|ABA47520.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei 1710b] gi|254217720|gb|EET07104.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1710a] Length = 822 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|293379950|ref|ZP_06626051.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus 214-1] gi|290923463|gb|EFE00365.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus 214-1] Length = 601 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + +++I LL+QD A F + + K Sbjct: 231 SVNYDDALQITGFA-DRENIEKILLALLNQDAGQALQFTQDELAK 274 >gi|126454158|ref|YP_001066508.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 1106a] gi|242316585|ref|ZP_04815601.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106b] gi|126227800|gb|ABN91340.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106a] gi|242139824|gb|EES26226.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 1106b] Length = 825 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I F+ AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|237812565|ref|YP_002897016.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346] gi|237503016|gb|ACQ95334.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346] Length = 825 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|156975356|ref|YP_001446263.1| DNA polymerase III subunits gamma and tau [Vibrio harveyi ATCC BAA-1116] gi|156526950|gb|ABU72036.1| hypothetical protein VIBHAR_03087 [Vibrio harveyi ATCC BAA-1116] Length = 736 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 151/359 (42%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITANPCGECDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ + ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 TIQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLA------SNGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++A A+ L K + + Q+ + + K RE Sbjct: 284 QLASQLHRVAMYQALPSTLDQAQPDAEKIELLSKALTPQDV------QLYYQIALKGRE 336 >gi|323493358|ref|ZP_08098481.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG 20546] gi|323312444|gb|EGA65585.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG 20546] Length = 714 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 141/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ K++ D L + + K V++ R + Sbjct: 66 TGITATPCGVCDT------CKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L +S +N+++ L+ + + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIHQQLDHILQHENVAAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIA--------DELLSQDQ-KIAFDFLIEFILKEIC 283 + S ++ + AL ++ I+ D + Q + +D L++ + ++ Sbjct: 231 QVLTDSVAHMLGTLDTDQALHLLEAISSKQPQVAMDSVAHLAQNGVEWDGLLQQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A+ L +++ Sbjct: 291 RLAMYQALPATLDQSQPDAEKVELLSRQL 319 >gi|153833856|ref|ZP_01986523.1| DNA polymerase III tau subunit [Vibrio harveyi HY01] gi|148869798|gb|EDL68772.1| DNA polymerase III tau subunit [Vibrio harveyi HY01] Length = 732 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 151/359 (42%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITANPCGECDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ + ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 TIQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLA------SNGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++A A+ L K + + Q+ + + K RE Sbjct: 284 QLASQLHRVAMYQALPSTLDQAQPDAEKIELLSKALTPQDV------QLYYQIALKGRE 336 >gi|227877637|ref|ZP_03995690.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256849090|ref|ZP_05554523.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|262047572|ref|ZP_06020527.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus MV-3A-US] gi|312977922|ref|ZP_07789668.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|227862785|gb|EEJ70251.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713866|gb|EEU28854.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US] gi|260572148|gb|EEX28713.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus MV-3A-US] gi|310895229|gb|EFQ44297.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 601 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + +++I LL+QD A F + + K Sbjct: 231 SVNYDDALQITGFA-DRENIEKILLALLNQDAGQALQFTQDELAK 274 >gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida DSM 20544] gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida DSM 20544] Length = 631 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 144/352 (40%), Gaps = 38/352 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + L G E I + L+ SG + HA LF G +G GK + A + Sbjct: 6 LYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++A + D + + N +DEIR +R Sbjct: 66 HGPTPEPCGQCEQ------CRKIADGSSMDVFEIDAASNR---------GIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + + + TI+SRC Sbjct: 111 VKFAPVDGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ + L ++K+ D + I A G + A+ IL + Sbjct: 171 QRYDFKRITVEEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 ++ + ++ + + +A + + +I + L + IL E+ + Sbjct: 231 TITAERVRQILGLVGHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLR 290 Query: 288 AAAL---SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + + +G +E D A+ L + F+ +++ ++++ E Sbjct: 291 SLMIFQAAGTVEAMDLYAEPQDVLQDQAKLFAP------EVLPRMIARLHEA 336 >gi|53719132|ref|YP_108118.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei K96243] gi|52209546|emb|CAH35499.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei K96243] Length = 825 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|83720172|ref|YP_442740.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis E264] gi|83653997|gb|ABC38060.1| DNA polymerase III, subunits gamma and tau, programmed [Burkholderia thailandensis E264] Length = 812 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|53723573|ref|YP_103021.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei ATCC 23344] gi|121598928|ref|YP_993170.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei SAVP1] gi|124386554|ref|YP_001026054.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC 10229] gi|126448303|ref|YP_001080677.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC 10247] gi|254178396|ref|ZP_04885051.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei ATCC 10399] gi|52426996|gb|AAU47589.1| DNA polymerase III, subunit gamma, putative [Burkholderia mallei ATCC 23344] gi|121227738|gb|ABM50256.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei SAVP1] gi|124294574|gb|ABN03843.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei NCTC 10229] gi|126241173|gb|ABO04266.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei NCTC 10247] gi|160699435|gb|EDP89405.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei ATCC 10399] Length = 825 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|126442209|ref|YP_001059241.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 668] gi|126221702|gb|ABN85208.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 668] Length = 826 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus ultunensis DSM 16047] gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus ultunensis DSM 16047] Length = 601 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNKCTN------CIAADHGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+++L K L+Q I D + A G + A+ IL D+++S Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I A + ++ I LL+QD A + K Sbjct: 227 YEKESVNYKDALQITGFA-ARENIEHILLSLLNQDAGTALKLAQAELDK 274 >gi|206560262|ref|YP_002231026.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia J2315] gi|198036303|emb|CAR52199.1| DNA polymerase III subunit gamma [Burkholderia cenocepacia J2315] Length = 787 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAETLSPEQVQLFYQIATVGR 335 >gi|49475611|ref|YP_033652.1| DNA polymerase III subunit delta' [Bartonella henselae str. Houston-1] gi|49238418|emb|CAF27645.1| DNA polymerase III, delta prime subunit [Bartonella henselae str. Houston-1] Length = 350 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 171/331 (51%), Gaps = 11/331 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P N +FGHE FL+Q R+ HA+LFEG+ GIGKATL F A ++L S Sbjct: 19 PSQNNIIFGHEAARHFLAQILKEERLPHAILFEGDYGIGKATLAFHLAWNIL-----SSQ 73 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P+ S +Q+ + L++S + KT K++T I D+IR I +FL+ T+ Sbjct: 74 KDGFKQPEHNSVIWRQITQGSHPGLLHISRRFDVKTQKFKTGILFDDIRDIIHFLNRTSK 133 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WR+++IDP D MNRNAANA+LK+LEEPP K LFI+I+H S +L TIRSRC I Sbjct: 134 DSGWRIVIIDPADDMNRNAANAILKTLEEPPAKTLFIIITHFSGKLLPTIRSRCQQISLR 193 Query: 188 SLSENNLYKALEQL---KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L + + K + + + + + + + G+ +A +L + +II + L+ Sbjct: 194 PLHNDEMKKIIIHMFSNQNVIDEENIGMIIQKSNGNPRKA-ALLIHGGFEIIKTIDTLLG 252 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 + + +A L S I F + IL +I K A A G L + + AQ Sbjct: 253 QSVCNPTI--VHNLAQTLSSLSSVIQFQQFCDEILDKIQKKAIMLAERGNLALSKKCAQA 310 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + + + +NLD++Q I +LL + + Sbjct: 311 WQEIHQEIGEIQSFNLDKKQFIINLLFRVHK 341 >gi|317498613|ref|ZP_07956906.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|291558496|emb|CBL37296.1| DNA polymerase III, subunits gamma and tau [butyrate-producing bacterium SSC/2] gi|316894100|gb|EFV16289.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 534 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 150/366 (40%), Gaps = 47/366 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I K L +GR+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K +A + + + + + N VD IR I+ Sbjct: 66 HPVDGEPCGEC------EVCKAIAEGSSMNVIEIDAASNN---------GVDNIREIKEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VQYSPATGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + K L EQ + D ++V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE---------FILKEI 282 Y+ D + +Q + D +LSQD D L + + + Sbjct: 227 FYLGEKLTYDNVLEVLGTVDIQVYSDLLDMILSQDINGVMDLLEDVARQGREWSQFITDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF--HLLSKARECNDLY 340 + L GQ A++ ++ +K + + Q + L+ R ++L Sbjct: 287 LWYLRNLLLVGQGNAAEEALEVSTDQLKLLQE-------KAQQVEENTLIRYIRILSELL 339 Query: 341 FRDFYA 346 R YA Sbjct: 340 ERIRYA 345 >gi|78066597|ref|YP_369366.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. 383] gi|77967342|gb|ABB08722.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 791 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAGGGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAGDLRRFADTLSPEQVQLFYQIATVGR 335 >gi|295692238|ref|YP_003600848.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus crispatus ST1] gi|295030344|emb|CBL49823.1| DNA polymerase III, gamma/tau subunit [Lactobacillus crispatus ST1] Length = 601 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + +++I LL+QD A + + K Sbjct: 231 SVNYDDALQITGFA-DRENIEKILLALLNQDAGQALQLTQDELAK 274 >gi|209694644|ref|YP_002262572.1| DNA polymerase III subunits gamma and tau [Aliivibrio salmonicida LFI1238] gi|208008595|emb|CAQ78770.1| DNA polymerase III subunit tau [Aliivibrio salmonicida LFI1238] Length = 714 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 139/334 (41%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQSHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K++ D L + + K V++ R + Sbjct: 65 EEGITSTPCGVC------STCKEIDEGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +S + ++ L++ ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKHISVDQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQ-------------DQKIAFDFLIEFI 278 + D++ + + +I + + ++ D + +D L + I Sbjct: 226 ALGNGNVTADIVSMMLGTLDTDQAIRILEAISTKNMQTLMSCINDLADIGVEWDGLAKEI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 ++ K A AL L++ A+ L ++ Sbjct: 286 AAQLHKLAMYQALPATLDKTQPDAERIELLSGQL 319 >gi|134277465|ref|ZP_01764180.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 305] gi|134251115|gb|EBA51194.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 305] Length = 837 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|163801914|ref|ZP_02195811.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4] gi|159174422|gb|EDP59226.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4] Length = 730 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 150/363 (41%), Gaps = 53/363 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPSKFDQVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITANPCGKCDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S + +++ L+ + ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDVIHQQLDHILAKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K++Q+A + +D L++ Sbjct: 231 TIQTDIVSHMLGTIDTDQAI-HLLESISSKQPQLAMDKIKQLA------SNGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + ++ + A AL L+ A A+ L K + + Q+ + + K RE Sbjct: 284 QLASQLHRVAIYQALPSTLDLAKPDAEKIELLSKALTPQDV------QLYYQIALKGRED 337 Query: 337 NDL 339 L Sbjct: 338 LAL 340 >gi|294788405|ref|ZP_06753648.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri ATCC 29453] gi|294483836|gb|EFG31520.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri ATCC 29453] Length = 654 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 133/316 (42%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L GR+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + + + D L + + N +D IR + Sbjct: 66 ENAQHGEPCGVCQS------CRDIDAGRFVDLLEIDAASNT---------GIDNIREVLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 111 NAQYAPTVGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 170 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ + L +I+ + + AA GS+ A+ +L D+ I Sbjct: 171 CLQFVLRNLTPQQVTAHLTHVLKTEQIVYEPNALALLGYAAQGSMRDALSLL----DQAI 226 Query: 237 S---------SYIDLIHIPRQEYALQ----KMQQIADELLSQDQKIAFDFL-IEFILKEI 282 + ++I + Y + M+Q + L+ + Q++A + + + +L ++ Sbjct: 227 AMGSGSVQERDVREMIGAVDKRYLYELLTFLMEQDGENLIKKAQEMASNAIGFDGVLNDL 286 Query: 283 CKSAKAAALSGQLEEA 298 + AL + A Sbjct: 287 AMLLQRLALIKTVPTA 302 >gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] Length = 856 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D L + + N +DE+R +R Sbjct: 66 HGPTDHPCNECSA------CKSILSGQSMDVLEIDAASNR---------GIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 TITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKLLSYIHDALAEGRDATQIMDALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVATDADELKVY 307 >gi|134295858|ref|YP_001119593.1| DNA polymerase III subunits gamma and tau [Burkholderia vietnamiensis G4] gi|134139015|gb|ABO54758.1| DNA polymerase III, subunits gamma and tau [Burkholderia vietnamiensis G4] Length = 880 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + D E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAGDGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAQTLSPEKVQLFYQIATVGR 335 >gi|323499527|ref|ZP_08104497.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM 21326] gi|323315400|gb|EGA68441.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM 21326] Length = 710 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 146/358 (40%), Gaps = 45/358 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFNEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQCDT------CKEIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L ++ + +++ L+ + + + AA GS+ A+ + D+ I+ Sbjct: 171 LQFHLKPITVDTIHEQLDHILGHEAVTSEPRALGMIAHAADGSMRDALSL----TDQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + +A L + D A L+E I + + A LS + Sbjct: 227 LGNGSVM----------AESVAHMLGTLDTDQAL-HLLESISSKQPEQAMET-LSALAQN 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN-----LDRRQM---IFHLLSKARECNDLYFRDFYAI 347 + + L ++H +MY LD+ Q LLS+ D+ + +Y I Sbjct: 275 GVEWDGLLQQLATQLHRMAMYQALPSTLDKSQPDADKIELLSRELSPQDV--QLYYQI 330 >gi|167767544|ref|ZP_02439597.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1] gi|167710836|gb|EDS21415.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1] Length = 531 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 145/357 (40%), Gaps = 43/357 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I K L +GR+ HA LF G +G GK T+ A V Sbjct: 3 LYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K +A + + + + + N VD IR I+ Sbjct: 63 HPVDGEPCGEC------EVCKAIAEGSSMNVIEIDAASNN---------GVDNIREIKEQ 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 108 VQYSPATGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 167 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + K L EQ + D ++V A GS+ A+ +L D+ I+ Sbjct: 168 QRYDFHRITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLL----DQCIA 223 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE---------FILKEI 282 Y+ D + +Q + D +LSQD D L + + + Sbjct: 224 FYLGEKLTYDNVLEVLGTVDIQVYSDLLDMILSQDINGVMDLLEDVARQGREWSQFITDF 283 Query: 283 CKSAKAAALSGQLEEADQIAQIYFS----LVKRVHAFSMYNLDRRQMIFH-LLSKAR 334 + L GQ A++ ++ L ++ L R I LL + R Sbjct: 284 LWYLRNLLLVGQGNAAEEALEVSTDQLKLLQEKAQQVEENTLIRYIRILSELLERIR 340 >gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM 20601] gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM 20601] Length = 580 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 143/353 (40%), Gaps = 45/353 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G + K L ++ HA LF G +G GK + +A + Sbjct: 6 LYRVFRPQAFQDIVGQSHVTKTLQNAIVQNKISHAYLFSGPRGTGKTSAAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + D L + + N V+EIR IR Sbjct: 66 RSTDGEPCNECDT------CKGITDGSNPDVLEIDAASNN---------GVEEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SR Sbjct: 111 VKYAPTNSKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ L+ I D + AA G + A+ +L D++IS Sbjct: 171 QRFDFKRITTQDITAHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + E AL+ +A LL+ L+E ++ + K A + LS L E Sbjct: 227 FGSEEVGV---EDALEITGSVAQNLLTD--------LVEAVMDKDPKQAIST-LSSLLAE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN----LD---RRQMI---FHLLSKARECNDLY 340 ++ L+ +Y LD R ++ F L+K + +Y Sbjct: 275 GKDPVRLVEDLLVFFRDILLYQKAPDLDEALERALVDDSFEALAKKADAAVIY 327 >gi|88800845|ref|ZP_01116400.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297] gi|88776418|gb|EAR07638.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297] Length = 677 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 132/342 (38%), Gaps = 43/342 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V++ R + Sbjct: 65 EQGVSSKPCGQCAS------CREIAEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S ++ + L + ++ + + A GS+ A+ + D+ I Sbjct: 170 CLQFNLKNMSREHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L+++ + LL +D + E +L E+ Sbjct: 226 AFGHGALAEQEVAAMLGTVDLKRVLNLVRALLQKDADGLLAMVSELDEHTPDYQTLLTEL 285 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMY 318 + A++ + A D+ A + + +Y Sbjct: 286 MSTLHRVAIAQAVPSAISNHKGDRDAIMALAKAGYAEDIQLY 327 >gi|192362329|ref|YP_001982902.1| DNA polymerase III subunits gamma and tau [Cellvibrio japonicus Ueda107] gi|190688494|gb|ACE86172.1| DNA polymerase III, gamma and tau subunits [Cellvibrio japonicus Ueda107] Length = 680 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 35/333 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRVFREMVGQEHVLQALINALDHNRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V++ R + Sbjct: 65 ETGVSSEPCGQC------AACREIAEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPMTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +++ + + LEQ + +S + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKNMNPERIVQHLKFVLEQELVPYEESALWHLGRAADGSMRDAMSLTDQAIAYGS 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF----------ILKE 281 KI S + ++ Q + + +A L + A D + E +L Sbjct: 230 GKITESEVSAMLGTIDQAAVYELVSALA-SLDGRALLAAVDKMSEQAPDYASALAEMLSV 288 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + + A A AL ++ + + L +R+ A Sbjct: 289 LHRIAIAQALPEAVDNSHGDRERIMGLAQRIAA 321 >gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] Length = 922 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D L + + N +DE+R +R Sbjct: 66 HGPTDHPCNECSA------CKSILSGQSMDVLEIDAASNR---------GIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 TITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKLLSYIHDALAEGRDATQIMEALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVAPDADELKVY 307 >gi|253582122|ref|ZP_04859346.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] gi|251836471|gb|EES65008.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] Length = 484 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 39/341 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + + G ++I K L +G+ HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPKNFEEIAGQKEIVKTLKASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D + + + N +DEIR+++ Sbjct: 65 ENGITDEPCNKCEN------CLSINDGSFMDMIEIDAASNR---------GIDEIRQLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SR Sbjct: 110 KINYQPSKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS + + LE++ + D + + + GS+ A IL +I Sbjct: 170 CQRYDFKTLSPAEMKEKLEEISKNEGVSVPDDVLNLIYENSGGSMRDATSILER---LMI 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + + I + + E L +KM++ D ++ + K L IE K+ Sbjct: 227 TCLNEEITLEKCEKVLGVTPVKKMKEFLDNVMEKKYKELIKLLDEFWSESLEIELFFKDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR 323 K K +LE + +I ++ ++ F Y D+R Sbjct: 287 AKYCKTLMSKSELEVNKGL-EIIGAVYDSLNKFK-YEEDKR 325 >gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1] gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1] Length = 504 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|323701680|ref|ZP_08113352.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum nigrificans DSM 574] gi|323533453|gb|EGB23320.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum nigrificans DSM 574] Length = 542 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 41/321 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I + L +GR+ HA LF G +G GK T A + Sbjct: 6 LYRTWRPQNFKDIVGQQHITRTLQNALVNGRVAHAYLFCGPRGTGKTTTAKVLAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N +DEIR +R Sbjct: 66 RGVDGEPCNECEN------CRAVNEGSAVDVVEIDAASNR---------GIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + G +V +ID V + A NALLK+LEEPP V+F+L + + + TI SRC Sbjct: 111 VKFTPSMGRRKVYIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC----- 232 F + + + L+++ I + + AA G + A+ IL Sbjct: 171 QRFDFRRIKPEEMVQRLKEVAAGSGIEVEEEALWLIAKAAEGGLRDALSILDQAAAFAAK 230 Query: 233 ---------------DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++++ + + AL+ + +I+D +D ++ L + Sbjct: 231 TVSPADIHSILGTVQQEVLANMTQYLVQGKTAEALRLISEISDR--GKDLRLFTKELTSY 288 Query: 278 ILKEICKSAKAAALSGQLEEA 298 + + + +S + + + EA Sbjct: 289 LRERLLESMEQRQPAANINEA 309 >gi|330432966|gb|AEC18025.1| DNA polymerase III subunits gamma and tau [Gallibacterium anatis UMN179] Length = 724 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 46/353 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ + R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPDQFSDVVGQEHIIAALTNALNNQRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D + + + K V++ R + Sbjct: 65 EKGITATPCGECEN------CRAIKEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPVRGRFKIYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + L++L +I + AA GSV A+ + D+ I Sbjct: 170 CIQFHLKALDADVIAAHLQKLLQKEQIDYQPQALMKIARAAQGSVRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I++ L LL D+ IA +LK + ++ A+ E Sbjct: 226 ALSNGNINVNDVNMMLG--------LLDNDKSIA-------LLKALSQADGEQAMQVLYE 270 Query: 297 EADQ---IAQIYFSLVKRVHAFSMY-----NLDRRQMIFHLLSKARECNDLYF 341 A Q ++ + + +H +M N ++ LL+K D+ F Sbjct: 271 IAQQGVDWERVLQEMAETLHQIAMLQFLPPNPEQANTALTLLAKNLSPEDVQF 323 >gi|240146665|ref|ZP_04745266.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis L1-82] gi|257201209|gb|EEU99493.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis L1-82] Length = 526 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 140/348 (40%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P + +A+ + + + + N VD IR+IR Sbjct: 66 HPVDGSPCGEC------PACRAIAAGNSMNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VEYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F +S + L E+ ++ + ++ AA GS+ A+ +L Sbjct: 171 QRYDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 D ++ + E + ++QI ++ ++ + + +IE + + Sbjct: 231 QDLTYDKVLETLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYL 290 Query: 287 KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L ++ + + I +L M + D + S+ Sbjct: 291 RNLMLVQSSDDMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSEL 338 >gi|228905819|ref|ZP_04069718.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 200] gi|228853827|gb|EEM98585.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 200] Length = 562 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTRVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|291537839|emb|CBL10950.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis XB6B4] Length = 526 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 140/348 (40%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P K +A+ + + + + N VD IR+IR Sbjct: 66 HPVDGSPCGEC------PACKAIAAGNSMNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VEYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F +S + L E+ ++ + ++ AA GS+ A+ +L Sbjct: 171 QRYDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 D ++ + E + ++QI ++ ++ + + +IE + + Sbjct: 231 QDLTYDKVLETLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYL 290 Query: 287 KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L ++ + + I +L M + D + S+ Sbjct: 291 RNLMLVQSSDDMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSEL 338 >gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM 2008] gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM 2008] Length = 895 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + S D L + + N +DE+R +R Sbjct: 66 HGPTDHPCNECSA------CRSILSGQSMDVLEIDAASNR---------GIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 S +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 SITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKVLSYVHDALAEGRDATQIMEALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVAPDADELKVY 307 >gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] Length = 892 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D L + + N +DE+R +R Sbjct: 66 QGPTDHPCNECSA------CKSILSGQSMDVLEIDAASNR---------GIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 S +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 SITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKVLSYVHDALAEGRDATQIMEALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVAPDADELKVY 307 >gi|59712294|ref|YP_205070.1| DNA polymerase III subunits gamma and tau [Vibrio fischeri ES114] gi|59480395|gb|AAW86182.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Vibrio fischeri ES114] Length = 708 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 142/330 (43%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K++ D L + + K V++ R + Sbjct: 65 EEGITSTPCGVC------STCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +S + +++ L++ ++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKHISVDQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIALGN 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIA----DELLS-----QDQKIAFDFLIEFILKEI 282 + + + ++ + A++ ++ I+ L++ D + +D L + + ++ Sbjct: 230 GSVTAEIVSAMLGTLDTDQAIRILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 K A AL L++ A+ L ++ Sbjct: 290 HKLAMYQALPATLDKTQPDAERIELLSTQL 319 >gi|330445437|ref|ZP_08309089.1| DNA polymerase III, subunits gamma and tau [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489628|dbj|GAA03586.1| DNA polymerase III, subunits gamma and tau [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 719 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L + L K L + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKHLDHQQIQEQLAKVLTEEKVEYEAKALGLLARAAEGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------------I 278 + + L + + + + D IA D L + + Sbjct: 226 ALGNGQVGADNVAAMLGTLNTDQALFLLEAVAKSDANIAMDTLQQLANVGVEWDSLLREL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 ++ + A AL L+EA A+ L + + Sbjct: 286 ASQLHRVAMYQALPASLDEALPDAERVSLLSQVM 319 >gi|293374915|ref|ZP_06621213.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis PC909] gi|292646464|gb|EFF64476.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis PC909] Length = 605 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA P + G I + + R+ HA LF G +G GK ++ A V Sbjct: 6 LYRAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAVNCV 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + D + + N VDEIR IR Sbjct: 66 NYPTDEPCNECVN------CTTITNGSNSDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPTMGRYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L ++ I + V A G + A+ +L D++IS Sbjct: 171 QRFDFKQISTKEITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLL----DQVIS 226 Query: 238 S-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 ID +H A ++ QI + D D + E I + Sbjct: 227 YSYDKILIDDVHALSGTIANHQLLQIIRGIKDLDFSTIIDLIQEMIDQ 274 >gi|228937325|ref|ZP_04099973.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970211|ref|ZP_04130872.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976781|ref|ZP_04137195.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407] gi|228782943|gb|EEM31107.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407] gi|228789512|gb|EEM37430.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822350|gb|EEM68330.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937815|gb|AEA13711.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar chinensis CT-43] Length = 562 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|228918973|ref|ZP_04082354.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840688|gb|EEM85948.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 562 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + Q+ DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQLIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|332035238|gb|EGI71745.1| DNA polymerase III subunits gamma and tau [Pseudoalteromonas haloplanktis ANT/505] Length = 841 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C+ + + D L + + K V++ R I Sbjct: 65 DEGISANPCGQCSS------CLDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL N+LS++ + LE ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLNALSQSEIKTQLEHVLTREQLSFDTDALSIISKAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I+ + L M Q + +L+QD L++ I + ++ AL Sbjct: 226 AQTNGDINNQAVQTMLGLMDTHYSQSLLAAILAQDGSA----LMDEIAQVASRNPNYVAL 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLD 321 L + Q+ LV N+D Sbjct: 282 LDDLIALTHLTQLTQ-LVPEAAGLDEKNVD 310 >gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] Length = 902 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D L + + N +DE+R +R Sbjct: 66 HGPTDHPCNECSA------CKSILSGQSMDVLEIDAASNR---------GIDEVRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFSLDSAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 S +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 SITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKVLSYVHDALAEGRDATQIMEALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVAPDADELKVY 307 >gi|291537700|emb|CBL10812.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis M50/1] Length = 425 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 140/348 (40%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P K +A+ + + + + N VD IR+IR Sbjct: 66 HPVDGSPCGEC------PACKAIAAGNSMNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VEYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F +S + L E+ ++ + ++ AA GS+ A+ +L Sbjct: 171 QRYDFRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 D ++ + E + ++QI ++ ++ + + +IE + + Sbjct: 231 QDLTYDKVLETLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYL 290 Query: 287 KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L ++ + + I +L M + D + S+ Sbjct: 291 RNLMLVQSSDDMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSEL 338 >gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus OF4] gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus OF4] Length = 561 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L + HA LF G +G GK + A + Sbjct: 6 LYRVWRPQQLRDVVGQEHITKTLQNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + S A+ D + + + N VDEIR IR Sbjct: 66 KAPVAEPCNEC------AACKGITSGAIVDVMEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKFAPNEVPYKVYIIDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + ++ I D + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRIPNTAIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK 280 + + + + + + + ++D + + L + + Sbjct: 227 YAEGPLTLEDVLAITGAVSEQVLVNLVEAVANKDSAVVLESLDQLVRD 274 >gi|218895159|ref|YP_002443570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842] gi|228898776|ref|ZP_04063060.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] gi|228963120|ref|ZP_04124291.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar sotto str. T04001] gi|218541669|gb|ACK94063.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842] gi|228796576|gb|EEM44013.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar sotto str. T04001] gi|228860868|gb|EEN05244.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL 4222] Length = 562 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|325844366|ref|ZP_08168121.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1] gi|325489171|gb|EGC91554.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1] Length = 605 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA P + G I + + R+ HA LF G +G GK ++ A V Sbjct: 6 LYRAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAVNCV 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + D + + N VDEIR IR Sbjct: 66 NYPTDEPCNECVN------CTTITNGSNSDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPTMGRYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L ++ I + V A G + A+ +L D++IS Sbjct: 171 QRFDFKQISTKEITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLL----DQVIS 226 Query: 238 S-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 ID +H A ++ QI + D D + + I + Sbjct: 227 YSYDKILIDDVHALSGTIANHQLLQIIRGIKDLDFSTIIDLIQDMIDQ 274 >gi|90580017|ref|ZP_01235825.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14] gi|90438902|gb|EAS64085.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14] Length = 741 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 133/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPSQFSDVVGQSHVLTALGNALTQNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKC------ATCREIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + LE + K+ + AA GS+ A+ + + Sbjct: 170 CLQFHLKHLDHQQIQTQLETVLTEEKVEYEAKALSLLARAAEGSMRDALSLTDQAIALGN 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEI 282 ++ I + ++ + AL ++ + + + + +D L+ + ++ Sbjct: 230 GQVGIDNVATMLGTLDTDQALFLLEAVVQANANIAMNSLQELANIGVEWDSLLRELASQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L++A A+ L + + Sbjct: 290 HRVAMYQALPASLDDALPDAERISLLSQLM 319 >gi|291562955|emb|CBL41771.1| DNA polymerase III, subunits gamma and tau [butyrate-producing bacterium SS3/4] Length = 572 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 132/333 (39%), Gaps = 32/333 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I K L SGR+ HA LF G +G GK T+ A V Sbjct: 6 LYRKWRPQVFADVKGQDHIVKTLQNQIGSGRIGHAYLFCGTRGTGKTTVAKILARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P KQ+ + + + + + N V+ IR IR Sbjct: 66 HPVDGSPCGEC------PSCKQILAGTSLNVVEIDAASNN---------GVENIREIREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 111 VQYPPTEGKYRVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F ++ + + L++L + D +V A GS+ A+ +L H+ Sbjct: 171 QRYDFRRITLDTITARLKELTEAENMPVEDKALRYVAKAGDGSMRDALSLLDQCAAFHFG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADE------LLSQDQKIAFDFLIEFILKEICKS 285 +D++ I + L ++ + L +F++ I Sbjct: 231 ETLTYEHVLDVLGAVDNSVFRDLFHAIRENRTKDCILKLEEMVVQGRELSQFVVDFIW-F 289 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + L ++A+ + + + ++ + Sbjct: 290 LRNLLLLRTADDAEDLLDMSEDNLTQLREDAAL 322 >gi|167629255|ref|YP_001679754.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum Ice1] gi|167591995|gb|ABZ83743.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum Ice1] Length = 606 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 138/349 (39%), Gaps = 30/349 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q L G E + + L R+ HA LF G +G GK T A + + Sbjct: 6 LYREWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAKALNCS 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + A HD L + + N VDEIR +R Sbjct: 66 GHGPVRPCNDC------LNCRAINTGASHDVLEIDAASNR---------GVDEIRELREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+F+L + I +TI SRC Sbjct: 111 VKYAPQEGNYKVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSK----RDFVKIAAYGSVARAIKILH----YDCD 233 F L N + LE++ + F+ A G + A+ IL Y + Sbjct: 171 QRFDFRRLGVNEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGN 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF------ILKEICKSAK 287 +I S + I + L M Q E D + + LI + +++ + Sbjct: 231 EIDSGDVTAILGAVADEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTRDLLGHYR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFS-MYNLDRRQMIFHLLSKARE 335 + + A + + + +V +Y++ Q LLS+A Sbjct: 291 DRLILRTVPGAADLVDMPDDIAAKVKETGHVYSVSDLQACIALLSQAEN 339 >gi|170733187|ref|YP_001765134.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia MC0-3] gi|169816429|gb|ACA91012.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia MC0-3] Length = 793 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAETLSPEQVQLFYQIATVGR 335 >gi|119469545|ref|ZP_01612449.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Alteromonadales bacterium TW-7] gi|119447080|gb|EAW28350.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Alteromonadales bacterium TW-7] Length = 831 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 37/332 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S +P C+ + + D L + + K V++ R I Sbjct: 65 DEGISASPCGQCSS------CTDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL N+LS++ + L+ Q ++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLNALSQSEIKTQLQHVLTQEQLRFDNDALSVIAKAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIE---------FILKEI 282 + I+ + L M Q + LLSQD + +L ++ Sbjct: 226 AQTNGDINNQAVQAMLGLMDTHYSQSLLAALLSQDGAALMSEIANVASKNPNYIALLDDL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 L+ + +A + + +K V Sbjct: 286 ISLTHLTQLTQLVPQAAGLDETNADYIKHVAE 317 >gi|256844521|ref|ZP_05550007.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] gi|256613599|gb|EEU18802.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN] Length = 601 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADQGSMSDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + +++I LL+QD A + + K Sbjct: 231 SVNYDDALQITGFA-DRENIEKILLALLNQDAGQALQLTQDELAK 274 >gi|153815986|ref|ZP_01968654.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756] gi|317500926|ref|ZP_07959136.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089174|ref|ZP_08338077.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846633|gb|EDK23551.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756] gi|316897629|gb|EFV19690.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|330405951|gb|EGG85477.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium 3_1_46FAA] Length = 539 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPAEFGDVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + N VD IR IR Sbjct: 66 HPVDGSPCGEC------EMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + +++L + D ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITERMQELMDTEHVEAEDKALRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y+ + + ++ ++++ D D + E +++ Sbjct: 227 FYLGQKVTYEHVLEVLGAVDTDVFSRLLRKVINTDVPGVLDVVEELVMQ 275 >gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] Length = 562 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|225374828|ref|ZP_03752049.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM 16841] gi|225213397|gb|EEG95751.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM 16841] Length = 523 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 148/363 (40%), Gaps = 47/363 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPQEFEDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P K +A+ + + + + + N VD IR+IR Sbjct: 66 HPVDGSPCGEC------PTCKAIAAGSSMNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VEYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L E+ ++ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFRRISIDTIAGRLTYLMEKEQVNVEERAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Y+ QE +K+ + + ++ F L+ IL + A + G + E Sbjct: 227 FYL------GQELTYEKVLETLGAVDTE----VFSRLLRQILDKNVTGAIQV-IDGMVIE 275 Query: 298 ADQIAQIYFSLVKRVHAFSMYN--------LDRRQMIFHLLSKARECND-----LYFRDF 344 ++ Q + + LD LL + E D Y R F Sbjct: 276 GREMGQFVTDFTWYLRNLLLVQSSDNMEDVLDISADNLALLKEEAEMVDPEILMRYIRIF 335 Query: 345 YAI 347 + Sbjct: 336 SEL 338 >gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM 16795] gi|164604029|gb|EDQ97494.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM 16795] Length = 551 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 80/355 (22%), Positives = 155/355 (43%), Gaps = 42/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L + + HA LF G +G GK + ++ V Sbjct: 8 LYRVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAYLFCGTRGTGKTSTAKIFSRAVNCT 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D + + + N +VD+IR +R Sbjct: 68 NLHNDEPCNECEN------CREILEDKTMDVVEIDAASNN---------SVDDIRELREN 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 113 VKYSPAKAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F ++ ++ + E+ I + + + + G++ A+ IL + + Sbjct: 173 QRFDFKRVTVKDISSRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISFEGN 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI------------LKE 281 KI SY D+I + ++++ +A+ ++ +D + + L +FI L + Sbjct: 233 KI--SYNDVIELL-GSVNIEQLFDLAESIIKEDTRKSLQILNDFIIWGKDVRNLVNDLID 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF-SMYNLDRRQMIFHLLSKARE 335 ++ +S L+E + + L+K+ NL R I ++LS+A++ Sbjct: 290 HFRNLMVCKISNDLDEIISLPEETIDLLKQQAETIDTNNLIR---ILNILSEAQD 341 >gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5] gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5] Length = 473 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 37/323 (11%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P + + + G E + L + R+ HA LF G +G+GK T+ A + Sbjct: 7 ARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCKN 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C +++ D + + + N +D++R ++ + Sbjct: 67 PSKGEPCGECEN------CREIDRGVFPDLIEMDAASNR---------GIDDVRALKEAV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID + + A NALLK+LEEPP + +F+L + IL TI SRC Sbjct: 112 NYKPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQ 171 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCDK 234 I F+ + + + + L E+ I + + + A+ G + A +L Y + Sbjct: 172 RIIFSKVRKEKVIEYLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGR 231 Query: 235 IISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEICK 284 + + + + I QE ++ LL+ + A FL E + + + Sbjct: 232 VTKEVVENFLGILSQE----SVRSFLKLLLNSEVDEAIKFLRELSEKGYNLTKFWEMLEE 287 Query: 285 SAKAAALSGQLEEADQIAQIYFS 307 + A L L+ + + Q + Sbjct: 288 EVRNAILVKSLKNPESVVQNWQD 310 >gi|313900814|ref|ZP_07834304.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2] gi|312954234|gb|EFR35912.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2] Length = 602 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 138/335 (41%), Gaps = 40/335 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAYLFCGPRGTGKTSIAKIFAKTINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P C+ + + + D + + + N V+E+R + Sbjct: 66 -NPNHKPCLECDN------CRAVQDGSHPDIIEIDAASNN---------GVEEVRTLIEK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 110 VKYAPLKGKYKIYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRC 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + LE+ +I + + A G + A+ IL D+ I+ Sbjct: 170 QRFDFTKVPREEIVQRIHTILEREQITCEEEVIRIIAQLADGGLRDALSIL----DQCIA 225 Query: 238 SYIDLIHI--PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + I + + Y + +Q+ D L +I + S A+ + Sbjct: 226 YAQNHIQVHHINEIYGITTIQEKLD-------------LYRYIYGKDAVSLLN-AIDQLI 271 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 E+ I ++ L++ + ++ + + H+L Sbjct: 272 EKGIDIKRLTVDLIEILKESIIFEYTKDASLLHIL 306 >gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] Length = 901 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 122/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D L + + N +DEIR +R Sbjct: 66 YGPTDHPCNECSA------CKSILSGQSMDVLEIDAASNR---------GIDEIRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++ + L E+ + + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATG 230 Query: 238 SYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 S +LI + +E+ + D L + D ++ + + + + AL Sbjct: 231 SITPQVVEELIGLVSKEWIIH----FLDALRNGDGPKVLSYVHDALAEGRDATQIMEALI 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 + A + + +Y Sbjct: 287 QHVR-----ALLVGKVAPDADELKVY 307 >gi|197334811|ref|YP_002156506.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11] gi|197316301|gb|ACH65748.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11] Length = 709 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 142/330 (43%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K++ D L + + K V++ R + Sbjct: 65 EEGITSTPCGVC------STCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +S + +++ L++ ++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKHISVDQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIALGN 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIA----DELLS-----QDQKIAFDFLIEFILKEI 282 + + + ++ + A++ ++ I+ L++ D + +D L + + ++ Sbjct: 230 GSVTAEIVSAMLGTLDTDQAIRILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 K A AL L++ A+ L ++ Sbjct: 290 HKLAMYQALPATLDKTQPDAERIELLSTQL 319 >gi|83645393|ref|YP_433828.1| DNA polymerase III subunits gamma and tau [Hahella chejuensis KCTC 2396] gi|83633436|gb|ABC29403.1| DNA polymerase III, gamma/tau subunit [Hahella chejuensis KCTC 2396] Length = 735 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 35/320 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + K L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVGKTTVARIFAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++A D + + + K V+++R + Sbjct: 65 EQGVSAIPCGECG------VCREIAEGRFVDLIEIDAASRTK---------VEDMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRSRYKIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS + L + ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKNLSPQRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + L + ++ + D L ++ A A ++ + Sbjct: 226 AFGDGKLE----------AKDVIEMLGTIEKHVVIDLLRTIAAQDCA--AMLAQVNHMAQ 273 Query: 297 EADQIAQIYFSLVKRVHAFS 316 A A + +L + +H + Sbjct: 274 FAPDYAYVLQALAELLHRVA 293 >gi|120554533|ref|YP_958884.1| DNA polymerase III, subunits gamma and tau [Marinobacter aquaeolei VT8] gi|120324382|gb|ABM18697.1| DNA polymerase III, gamma subunit [Marinobacter aquaeolei VT8] Length = 637 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 133/339 (39%), Gaps = 41/339 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+G A + Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALEHQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K++ + D + + + VD++R + Sbjct: 65 ETGITPNPCGECDS------CKEILENRFVDLIEIDAASRT---------GVDDMRELTD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ ++ L+ + +I D + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKRMTPEHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFD-------------FLIEFI 278 + + + L + +Q+I + L+ +D ++ + Sbjct: 226 AFGNENLAASDVSNMLGTIDQRDIQRIVNALVERDGPGLLSEINRISDFAPDYGVILSDM 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 L + + G + A A L +R+ A Sbjct: 286 LSLFHRVTMEQVVPGSADNAMGDAAQVQELARRLSAEDA 324 >gi|269962151|ref|ZP_06176505.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833235|gb|EEZ87340.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 729 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 77/359 (21%), Positives = 150/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPNKFDQVVGQNHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ D L + + K V++ R + Sbjct: 66 TGITANPCGECDT------CREIDEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L +S +++++ L+ + ++ + AA GS+ A+ + Sbjct: 171 LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A + +D L++ Sbjct: 231 TIQTDIVSHMLGTIDTDQAI-HLLESISSKQPQQAMDKIQQLA------SNGVEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A AL L++ A+ L K + + Q+ + + K RE Sbjct: 284 QLASQLHRVAMYQALPSTLDQDQPDAEKIELLSKALTPQDV------QLYYQIALKGRE 336 >gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 562 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|160914821|ref|ZP_02077035.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991] gi|158433361|gb|EDP11650.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991] Length = 593 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 136/334 (40%), Gaps = 36/334 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I K L ++ HA LF G +G GK ++ +A + Sbjct: 12 LYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKVINCE 71 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + D + + + N V+E+R + Sbjct: 72 SK-EHKPCLQCDN------CLAVQNGSHPDIIEIDAASNN---------GVEEVRNLIEK 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 116 VKYAPLKGKYKVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRC 175 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +N + LE+ I D + + A G + A+ IL D+ I+ Sbjct: 176 QRFDFTKVPKNEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSIL----DQCIA 231 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I LQ + +I Q++ F + ++ L G LE+ Sbjct: 232 YATNHIE-------LQHINEIYGITTVQEKMKLFHHIFNNEPVDLMDM-----LDGMLEK 279 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 I ++ L++ + ++ + + H LS Sbjct: 280 GLDIPRLTVDLIELLKESIIFEYTKDSSLLHSLS 313 >gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] Length = 562 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] Length = 546 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 136/351 (38%), Gaps = 48/351 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F + + G + + L ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRVFRSQSFEEVVGQKHVTTTLKNAIQKNKISHAYLFNGPRGTGKTSIAKIFAKAINCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + D + + + N VDEIR IR Sbjct: 66 VSTDGEPCNSCDT------CVSITKGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NALLK+LEEPP +FIL + + +TI SRC Sbjct: 111 VKYAPGESTYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S N++ + L I + +F+ A G + A+ IL D+ I+ Sbjct: 171 QRFDFKAISVNDIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSIL----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + L+ + + + +D D++I +KE K L E Sbjct: 227 FGTETLT-------LEHVHSVTGSVGREDFFELTDYIITHDVKEAFKQFHRL-----LSE 274 Query: 298 ADQIAQIYFSLVKRVHAF------------SMYNLDRRQMIFHLLSKAREC 336 + ++ L+ + S+Y LD +++ ++ K + Sbjct: 275 GKETTRLVNDLIYFLRDIIMDYAADNKGEESIYQLDIG-LLYEMIDKINDT 324 >gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM 12042] gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM 12042] Length = 613 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 132/341 (38%), Gaps = 43/341 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L ++ HA LF G +G GK T+ A V Sbjct: 6 LYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D AP C + D + + + N VDE+R + Sbjct: 66 -DQQNAPCNQCRS------CLAIQQGNHPDIVEIDAASNN---------GVDEVRELIEK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK+LEEPP V+FIL + +L TI SRC Sbjct: 110 VKYAPLEGRYKVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRC 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ + +N + LEQ I D V A G + A+ I+ D+ I+ Sbjct: 170 QRYDFSKVGQNEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIM----DQCIA 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I + + +++++ ++ + + + + + G Sbjct: 226 YAQNHITAAHVNE-IYGITTVSEKIE------MLQWIFQHQAQSLLEKIRLLNEKGV--- 275 Query: 298 ADQIAQIYFSLVKRVHA--FSMYNLDRRQMIFHLLSKAREC 336 I ++ L++ + +Y D LL+K E Sbjct: 276 --DIKRLTSDLIEILKECVIFIYTQD-----VTLLNKINET 309 >gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] Length = 562 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] Length = 804 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + S D L + + N +DEIR +R Sbjct: 66 HGPTDHPCNEC------SVCKSILSGQSMDVLEIDAASNR---------GIDEIRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ +++ + L+ + D+ + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + +LI + +++ + + L + D ++ + + + AL+ Sbjct: 231 EITPAVVEELIGLVSKDWII----KFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALT 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 L A + + +Y Sbjct: 287 QHLR-----ALLIAKVAPDAEELKVY 307 >gi|580855|emb|CAA29958.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 422 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ ++ + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ A ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRELSEQIPAQALYEM------IDILNKSHQ 338 >gi|109899204|ref|YP_662459.1| DNA polymerase III, subunits gamma and tau [Pseudoalteromonas atlantica T6c] gi|109701485|gb|ABG41405.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Pseudoalteromonas atlantica T6c] Length = 914 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 145/347 (41%), Gaps = 45/347 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C ++ D L + + K V++ R + Sbjct: 65 ELGMGSKPCGKC------STCVEIEQGNFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS + + L+ Q ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKALSRAQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSL----SDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAF---DFLIE------FILKEI 282 + + + L M ++ + +L++ + F DF+ E +L E+ Sbjct: 226 AQGNGNVSLSIVTDMLGLMDKTQVLKLLNAVLNKQNESVFELVDFMSEQAVDYSQVLNEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 AL+ + +A ++ + + A ++Y L + + H+ Sbjct: 286 MSLLHQVALTQFVPDACKL--------ETISARAIYQLAKNALPEHI 324 >gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC 10987] gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC 10987] gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] Length = 562 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + +L + + +Y I H LSKA++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRTLSEEMQPEVIYE------IIHTLSKAQQ 338 >gi|91783455|ref|YP_558661.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] gi|91687409|gb|ABE30609.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] Length = 957 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 133/352 (37%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAGDLRRFAEALSAEQVQLFYQIATIGRS 336 >gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 630 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 40/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L + ++ HA LF G +G GK + +A V + Sbjct: 48 LYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCH 107 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N V+EIR IR Sbjct: 108 YLEDGEPCNKC------ETCRAINEGSLSDVIEIDAASNN---------GVEEIRDIRDK 152 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 153 VKYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 212 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + L+Q I D + AA G + A+ IL D+ +S Sbjct: 213 QKFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSIL----DQAMS 268 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + E ALQ + +ELL+ +E ++K+ K+A + L+ Sbjct: 269 YGDDKVT---YENALQVTGSVTNELLT--------TYVEQVIKKDTKNALIT-VQKVLDN 316 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRR---QMIFHLLSKARECNDLYFRD--FYAI 347 ++ L +Y D + Q+ ++ + D Y I Sbjct: 317 GKDASRFVEDLTSYCQDILLYQQDPQIVEQLELGMVDDKFKALSDQISDEEIYQI 371 >gi|90020982|ref|YP_526809.1| DNA polymerase III subunits gamma and tau [Saccharophagus degradans 2-40] gi|89950582|gb|ABD80597.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Saccharophagus degradans 2-40] Length = 690 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 130/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVSSEPCGECSA------CVEISEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKI--------- 227 CL ++S + L + I +S + +A GS+ A+ + Sbjct: 170 CLQFNLKNMSPERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGG 229 Query: 228 -----------LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 L K++ + + + L + + A+ + D +A LI Sbjct: 230 GKVSEDEVASMLGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEH--APDFDVALADLIT 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + A AL + QI + L Sbjct: 288 LLHRIAIAQALPDALDNSYGDRTQILEFASKLAPE 322 >gi|259048077|ref|ZP_05738478.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens ATCC 49175] gi|259035138|gb|EEW36393.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens ATCC 49175] Length = 572 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 122/320 (38%), Gaps = 42/320 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + + HA LF G +G GK + +A + Sbjct: 6 LYRKWRPQTFDDMVGQSAVTHTLKNAISNQKTSHAYLFTGPRGTGKTSAAKVFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + + D + + + N V+EIR IR Sbjct: 66 NQKNGEPCNEC------EICKGITNGTIGDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++ A NALLK+LEEPPQKV+FIL + I +TI SR Sbjct: 111 ARYAPTQAEYKIYIIDEVHMLSTGAFNALLKTLEEPPQKVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + L+Q I V A G + A+ +L Sbjct: 171 QRFDFRRITSQEIIDRLAYILDQEGIPYEADALSVVARCANGGMRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS----- 292 +I + ++ Q++ L D +I+F+ + A+ A S Sbjct: 223 ---QMISFGDGKVTFEEAIQVSGSLTD-------DLMIDFVADLQAQKAEEALESLQQLF 272 Query: 293 GQLEEADQIAQIYFSLVKRV 312 +EA ++ + + + + Sbjct: 273 KMGKEASRLVEEWLEFARDL 292 >gi|323526149|ref|YP_004228302.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. CCGE1001] gi|323383151|gb|ADX55242.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1001] Length = 944 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 134/352 (38%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL ++ + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVSSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALAQGDGAAVLSVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + M + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAGDLRRFADMLSAEQVQLFYQIATIGRS 336 >gi|126652951|ref|ZP_01725093.1| DnaX [Bacillus sp. B14905] gi|126590281|gb|EAZ84403.1| DnaX [Bacillus sp. B14905] Length = 595 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 135/332 (40%), Gaps = 40/332 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + Sbjct: 8 RVYRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHA 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 +K P C + + D + + N V+EIR I + Sbjct: 68 PAKEPCNEC------ATCISITDGSHPDVIEFDAASNS---------RVEEIRDIIEKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK+LEEPP +FIL + + +TI SRC Sbjct: 113 FAPASSRYKVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F LS N++ + LE +++ + + +A G + A+ +L D+++S Sbjct: 173 FDFKRLSTNDIIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLL----DQVVSFS 228 Query: 240 IDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK---------EICKS 285 + + + + Q +A+ L ++D L + I+ ++ Sbjct: 229 GEKLKLEDTLLVTGSISQDVFYDLAEALKAKDVAQMLALLEQLIVDGKDPLRLSEDLITF 288 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + L L+ +D +A++ + S+ Sbjct: 289 FRDLLL---LQTSDDLAELLELVSPEERVLSL 317 >gi|261404007|ref|YP_003240248.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. Y412MC10] gi|261280470|gb|ACX62441.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp. Y412MC10] Length = 571 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 134/344 (38%), Gaps = 45/344 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C +++ S A+ D + + N V+EIR +R Sbjct: 66 HGPAEEPCNAC------EACRRITSGAVMDVQEIDAASNR---------GVEEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VKYAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S LEQ+ I ++ + G + A+ IL D+I S Sbjct: 171 QRFDFRRVSLEEQTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSIL----DQIAS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 SY ++ + A ++ ++A + D + + +F+ ++ + Sbjct: 227 FTGGTVSYRQVMDMTGG-IASEQFGRLAGAVKQGDAGLVLQIVEQFMQEGKSADKCMENL 285 Query: 283 CKSAKAAALSGQLEEADQIAQI------YFSLVKRVHAFSMYNL 320 + + + +AD++ + + ++ + Sbjct: 286 LYYFRDLLMIKMVPDADKLTDRVLNPAEFQEMANAFSRDELFQM 329 >gi|329930186|ref|ZP_08283799.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5] gi|328935208|gb|EGG31689.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5] Length = 571 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 134/344 (38%), Gaps = 45/344 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C +++ S A+ D + + N V+EIR +R Sbjct: 66 HGPAEEPCNAC------EACRRITSGAVMDVQEIDAASNR---------GVEEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VKYAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S LEQ+ I ++ + G + A+ IL D+I S Sbjct: 171 QRFDFRRVSLEEQTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSIL----DQIAS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 SY ++ + A ++ ++A + D + + +F+ ++ + Sbjct: 227 FTGGTVSYRQVMDMTGG-IASEQFGRLAGAVKQGDAGLVLQIVEQFMQEGKSADKCMENL 285 Query: 283 CKSAKAAALSGQLEEADQIAQI------YFSLVKRVHAFSMYNL 320 + + + +AD++ + + ++ + Sbjct: 286 LYYFRDLLMIKMVPDADKLTDRVLNPAEFQEMANAFSRDELFQM 329 >gi|315180754|gb|ADT87668.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii NCTC 11218] Length = 700 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 L +S N+ L + ++ + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQHQLAHILAAEQVNSDNKALAMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 232 --CDKIISSYIDLIHIPRQEYALQKM-----QQIADELLSQDQ-KIAFDFLIEFILKEIC 283 ++S + + + + L+ M Q + D + + Q + +D L++ + ++ Sbjct: 231 QVQPNVVSHMLGTLDTDQALHLLKAMSNKQPQAVMDCIEALAQNGVEWDGLLQQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL +++A A+ L K + Sbjct: 291 RIAMYQALPSSIDKAQPDAETIEWLAKAL 319 >gi|260769015|ref|ZP_05877949.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP 102972] gi|260617045|gb|EEX42230.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP 102972] Length = 692 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTKFNEVVGQAHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 L +S N+ L + ++ + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQHQLAHILAAEQVNSDNKALAMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 232 --CDKIISSYIDLIHIPRQEYALQKM-----QQIADELLSQDQ-KIAFDFLIEFILKEIC 283 ++S + + + + L+ M Q + D + + Q + +D L++ + ++ Sbjct: 231 QVQPDVVSHMLGTLDTDQALHLLKAMSNKQPQAVMDCIEALAQNGVEWDGLLQQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL +++A A+I L K + Sbjct: 291 RIAMYQALPSSIDKAQPDAEIIEWLAKAL 319 >gi|150392457|ref|YP_001322506.1| DNA polymerase III subunits gamma and tau [Alkaliphilus metalliredigens QYMF] gi|149952319|gb|ABR50847.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus metalliredigens QYMF] Length = 559 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 133/327 (40%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + + HA LF G +G GK + +A V Sbjct: 6 LYRKWRPRIFEDVIGQDHVIKTLKNQIEANNVAHAYLFSGTRGTGKTSTAKIFARAVNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P C + + + ++ D + + + N VD IR IR Sbjct: 66 DEQNVNPCNEC------EVCQGIITESIMDVIEIDAASNN---------GVDHIREIREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VKYPPSKGKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPQKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH-----YDC 232 F + +++ K L + I + V + A G++ A+ IL + Sbjct: 171 QRFDFKPVKTDDMMKQLVYICKSMDINAEEEALRVVAMNAEGALRDALSILEQCISFHPG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 + + + E+ + + S+ ++ ++E ++K++ + Sbjct: 231 QLTYHDVTNTLGMVSHEFLFDMAEAFTKQNASKAIELVQQVIMEGKDVQVLIKDLIGYYR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 L+ E + + ++ R+ Sbjct: 291 GLLLANMNVELEDLLSFSQEILSRIKE 317 >gi|262402603|ref|ZP_06079164.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586] gi|262351385|gb|EEZ00518.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586] Length = 695 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFNEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGEC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 L +S +N+ + L++ KI + + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 KIISSYID-LIHIPRQEYALQKMQQIADE---------LLSQDQKIAFDFLIEFILKEIC 283 + S + ++ ++AL +Q I+ + + +D L++ + ++ Sbjct: 231 AVKSDIVAHMLGTLDTDHALHLLQAISQQTPQVVMECIDTLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLAKVL 319 >gi|182416378|ref|YP_001821444.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1] gi|177843592|gb|ACB77844.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1] Length = 395 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 41/336 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G + + + L R+ HA LF G +G GK + +A + Sbjct: 8 VIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNC 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + DP P K +A + D + + + N VD++R +R Sbjct: 68 TDGP------KADFDPNDPACKAIAEGSHLDVIEIDGASNN---------GVDQVRDLRD 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ A NALLK+LEEPP V F+ + +L TI SR Sbjct: 113 TVQYAPAQGRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISR 172 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C + + + L+Q+ KI + + + A G + A IL Sbjct: 173 CQRFDLKPIPPDLIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCG 232 Query: 232 CDKIISSYIDLIHIPRQEYAL-----------QKMQQIADELLSQDQKIA------FDFL 274 D + +D+ + E +K+ I D+ + + + F+ Sbjct: 233 TDISEADVLDVYGLVSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQAFV 292 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVK 310 +L I + ++A L G+ +Q+ ++ +L + Sbjct: 293 RAALLDAIAQGGRSAKLGGEPMTTEQLTRMLDALRE 328 >gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187] gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187] gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 562 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|291548744|emb|CBL25006.1| DNA polymerase III, subunits gamma and tau [Ruminococcus torques L2-14] Length = 530 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 144/352 (40%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPSEFEDVKGQDHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K +A+ + + + + N VD IR IR Sbjct: 66 HPVNGSPCGEC------EMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L ++ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITDRMRDLMQTEQVEVEEKALRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL--KEICKSA--- 286 Y+ D + ++ ++L +D D + + ++ +E+ + A Sbjct: 227 FYLGQKLTYDHVLEVLGAVDTDVFSRLLRKVLERDVAGVLDIVEDLVMQGRELTQLAADF 286 Query: 287 ----KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L + + + + ++++ M LD + S+ Sbjct: 287 TWYLRNLLLVKTSDNIEDVLDVSTENMLQLKEESKMIELDMLLRYIRIFSEL 338 >gi|23097484|ref|NP_690950.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] gi|22775707|dbj|BAC11985.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] Length = 569 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 145/347 (41%), Gaps = 39/347 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPRTFEDVVGQTHITRTLQNAIEQDKFSHAYLFSGPRGTGKTSAAKIFAQTINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P C + + ++ D + + + N +VD+IR IR Sbjct: 66 HAPVKEPCNEC------AACRGIQDGSVSDVIEIDAASNT---------SVDDIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +T ++V +ID V ++ NA NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSTVPYKVYIIDEVHMISVNAFNALLKTLEEPPKHVVFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F +S ++ ++ I D + V +AA G + A+ IL Y + Sbjct: 171 QRFDFKPISNQSIVGRMQTIMQAENIHVTDEALESVALAAEGGMRDALSILDQAISYSEE 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------------FILK 280 K+I + + + L K+ +E Q+ +A D +I + ++ Sbjct: 231 KVILEDVLAVTGGVSQVVLHKVVSAMNENNVQEVLVALDEMIRTGKDPGKFVQDLIYFMR 290 Query: 281 EICKSAKAAALSGQLEEA---DQIAQIYFSLVKRVHAFSMYNLDRRQ 324 ++ +A L+ LE A D Q+ + + S+ L++ Q Sbjct: 291 DLLLFRSSANLADMLERAVADDSFKQLSERVSNQWIQRSIIELNQCQ 337 >gi|330817182|ref|YP_004360887.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli BSR3] gi|327369575|gb|AEA60931.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli BSR3] Length = 813 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGITSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ ++ + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVMHLERILGEEQVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D + + D E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDAIAAADGSEILTIADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 SG L AQ + + + ++ Q+ + + + R Sbjct: 286 SGLLHRIA-WAQFAPASVLDEWPEAGDLRRFADLLSPEQVQLYYQIATVGR 335 >gi|218233931|ref|YP_002364873.1| DNA polymerase III subunits gamma and tau [Bacillus cereus B4264] gi|228956463|ref|ZP_04118261.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pakistani str. T13001] gi|229039927|ref|ZP_04189693.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676] gi|229107708|ref|ZP_04237346.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15] gi|229148431|ref|ZP_04276689.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550] gi|218161888|gb|ACK61880.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus B4264] gi|228635040|gb|EEK91611.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550] gi|228675748|gb|EEL30954.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15] gi|228727417|gb|EEL78608.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676] gi|228803220|gb|EEM50040.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pakistani str. T13001] Length = 562 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|30018295|ref|NP_829926.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC 14579] gi|229125539|ref|ZP_04254573.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4] gi|29893835|gb|AAP07127.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579] gi|228657923|gb|EEL13727.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4] Length = 562 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC 11577] gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC 8290] gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC 11577] gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC 8290] Length = 630 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 40/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L + ++ HA LF G +G GK + +A V + Sbjct: 48 LYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCH 107 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N V+EIR IR Sbjct: 108 YLEDGEPCNKC------ETCRAINEGSLSDVIEIDAASNN---------GVEEIRDIRDK 152 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 153 VKYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 212 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + L+Q I D + AA G + A+ IL D+ +S Sbjct: 213 QKFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSIL----DQAMS 268 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + E ALQ + +ELL+ +E ++K+ K+A + L+ Sbjct: 269 YGDDKVT---YENALQVTGSVTNELLT--------TYVEQVIKKDTKNALIT-VQKVLDN 316 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRR---QMIFHLLSKARECNDLYFRD--FYAI 347 ++ L +Y D + Q+ ++ + D Y I Sbjct: 317 GKDASRFVEDLTSYCQDILLYQQDPQIVEQLELGMVDDKFKALSDQISDEEIYQI 371 >gi|153872370|ref|ZP_02001285.1| DNA polymerase III [Beggiatoa sp. PS] gi|152071164|gb|EDN68715.1| DNA polymerase III [Beggiatoa sp. PS] Length = 529 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 132/335 (39%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRNFPEMVGQAHVLRALTNALENNRLHHAYLFTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P C+ +++ D + + + K V++ R + Sbjct: 65 DTGITAYPCGQCSA------CREIDEGRFVDLIEVDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPPTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL L + + L E+ I + AA GS+ A+ +L Sbjct: 170 CLQFNLKRLPLEQITQHLTKIIEEEDINYELPALRLLAQAADGSLRDALSLLDQAIAFGA 229 Query: 232 ----CDKIIS-----------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + S ++L+ L ++ Q+A + + D I ++ Sbjct: 230 GKLSSDDVSSMLGTLDQNRVLELVNLLAANDAAGLLAQIAQLAAQ--NPDFFILLGDILS 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 F+ + A + +++ I Q+ +L Sbjct: 288 FMQRIALAQFVPATVDANQPDSEAILQLSQTLSPE 322 >gi|229142828|ref|ZP_04271272.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24] gi|228640642|gb|EEK97028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24] Length = 562 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + QI DE++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRKLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|229100809|ref|ZP_04231627.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28] gi|228682616|gb|EEL36675.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28] Length = 562 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +S N++ + L + V AA G + A+ ++ D+ IS Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLI----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK 280 D + + Q + + + D A + E + K Sbjct: 227 YSDDAVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMSK 274 >gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus acidophilus 30SC] gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus acidophilus 30SC] Length = 602 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNKCAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + ++QI +LLS+D A E + K Sbjct: 231 SVNYEDALQITGFA-DRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|296157765|ref|ZP_06840599.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1] gi|295892011|gb|EFG71795.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1] Length = 966 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 134/352 (38%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSAPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAGDLRRFAEALSAEQVQLFYQIATIGRS 336 >gi|217421704|ref|ZP_03453208.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 576] gi|217395446|gb|EEC35464.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei 576] Length = 712 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +G L AQ + + + ++ Q+ + + + R Sbjct: 286 AGLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|90411566|ref|ZP_01219576.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum 3TCK] gi|90327456|gb|EAS43809.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum 3TCK] Length = 759 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 135/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + LS R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHQFSDVVGQSHVLTALSNALAHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGVTATPCGQCGT------CKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L N + L Q + + AA GS+ A+ + + Sbjct: 170 CLQFHLKHLDNNQIQSQLSNVLTQENVDFEPKALSLLSRAAEGSMRDALSLTDQAIALGN 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQI----ADELLSQDQKIA-----FDFLIEFILKEI 282 ++ + + ++ + AL ++ + A+ + +++A +D L+ + ++ Sbjct: 230 GQVHADSVSMMLGTLNTDQALFLLEAVSGGQANTAMGGLEELASVGVEWDSLLRELSAQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+ + A +L + Sbjct: 290 HRVAMHQALPAALDMSAPDADRIITLSSAM 319 >gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus GRL 1118] Length = 602 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNKCAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + ++QI +LLS+D A E + K Sbjct: 231 SVNYEDALQITGFA-DRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 562 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + +L + + +Y I H LSKA++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRTLSEEMQPEVIYE------IIHTLSKAQQ 338 >gi|229074083|ref|ZP_04207132.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18] gi|229094743|ref|ZP_04225751.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29] gi|229113697|ref|ZP_04243134.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3] gi|228669763|gb|EEL25168.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3] gi|228688681|gb|EEL42551.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29] gi|228709046|gb|EEL61170.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18] Length = 562 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +S N++ + L + V AA G + A+ ++ D+ IS Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLI----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK 280 D + + Q + + + D A + E + K Sbjct: 227 YSDDAVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMSK 274 >gi|321313687|ref|YP_004205974.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5] gi|320019961|gb|ADV94947.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5] Length = 563 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ ++ + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDILKVEDALLITGAVSQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRELSEQIPDQALYEM------IDILNKSHQ 338 >gi|296332940|ref|ZP_06875398.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672717|ref|YP_003864388.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii str. W23] gi|296149904|gb|EFG90795.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410960|gb|ADM36078.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. spizizenii str. W23] Length = 563 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + K +E ++ + D + AA G + A+ +L D+ +S Sbjct: 171 QRFDFKRITSQAIVGRMNKIVEAEQLQVEEGSLDIIASAADGGMRDALSLL----DQAVS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDVLKVEDALLITGAVSQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ A ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRGLSEQIPAQAIYEM------IDILNKSHQ 338 >gi|314935127|ref|ZP_07842480.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis subsp. hominis C80] gi|313656462|gb|EFS20201.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis subsp. hominis C80] Length = 569 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 33/281 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NPHDGEPCNEC------AICKGITQGTNGDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L ++ + ++ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISTEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + + Q + D S D+ + + + Sbjct: 227 FGDEHLTL----------QDVLDVTGSVDEASLNELFNDIV 257 >gi|107028994|ref|YP_626089.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia AU 1054] gi|116689848|ref|YP_835471.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia HI2424] gi|105898158|gb|ABF81116.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia AU 1054] gi|116647937|gb|ABK08578.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia HI2424] Length = 787 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGERLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAETLSPEQVQLFYQIATVGR 335 >gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis str. Al Hakam] gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al Hakam] gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] Length = 562 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|228474144|ref|ZP_04058881.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119] gi|228271839|gb|EEK13176.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119] Length = 569 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 33/281 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NPHDGEPCNEC------AICKGITQGTNGDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L ++ + ++ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISTEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + + Q + D S D+ + + + Sbjct: 227 FGDEHLTL----------QDVLDVTGSVDEASLNELFNDIV 257 >gi|153828104|ref|ZP_01980771.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39] gi|148876346|gb|EDL74481.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39] Length = 462 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 146/352 (41%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A AL L+++ A SL K + + Q+ + + K R+ Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLAPQDV------QLYYQIALKGRQ 336 >gi|315037610|ref|YP_004031178.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL 1112] gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL 1112] Length = 602 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNKCAN------CIAADQGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+ +L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKADLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D + I + ++QI +LLS+D A E + K Sbjct: 231 SVNYEDALQITGFA-DRKNVEQILLKLLSKDAPAALKLAQEELDK 274 >gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] Length = 558 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|302390827|ref|YP_003826647.1| DNA polymerase III subunits gamma/tau [Acetohalobium arabaticum DSM 5501] gi|302202904|gb|ADL11582.1| DNA polymerase III, subunits gamma and tau [Acetohalobium arabaticum DSM 5501] Length = 586 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 24/284 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G +++ + L R+ HA LF G +G GK + ++ + N Sbjct: 6 LYRKWRPQTFSDIVGQQNVIQTLENAIKFDRIAHAYLFCGPRGTGKTSTAKVFSKALNCN 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ ++ D + + + N +DEIR +R Sbjct: 66 DGPTVTPCSECKS------CQKIEDNSSIDVIEIDAASNR---------GIDEIRELREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID + + A NALLK+LEEPP+ V+FIL + ++L TI SRC Sbjct: 111 VKFFPTEGNYKVYIIDEAHMLTKEAFNALLKTLEEPPEYVIFILATTEPHSLLPTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F+ LS NL + L +Q +I + +A G + I +L Y D Sbjct: 171 QRFDFSRLSIQNLVQRLNFISQQEEIDLTAEAALAIARSAEGGMRDGISLLDQIISYSGD 230 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +I I + ++ + +E + ++ I + + Q + D + + Sbjct: 231 RIEIDDVVTVLGLVDREVLFEMVEIITNNQVEQGLSLINDIVNQ 274 >gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] Length = 562 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLVDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] Length = 562 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|291482389|dbj|BAI83464.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. natto BEST195] Length = 563 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ ++ + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDILKVEDALLITGAVSQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ A ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRKLSEQIPAQALYEM------IDILNKSHQ 338 >gi|221135204|ref|ZP_03561507.1| DNA polymerase III subunits gamma and tau [Glaciecola sp. HTCC2999] Length = 834 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPNKFSELVGQEHVVTAISNALDNNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C + + D L + + K VD+ R + Sbjct: 65 DTGLSANPCGECGT------CRDIEQGRFVDLLEIDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYRPTQGDYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS + + L Q I + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKALSREQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + I L M +I ++ D+ F+ + +L E+ Sbjct: 226 AQGNNQISTVVVSDMLGLMDKNQILKILHSMIEGDKIAVFEQVESLAQTSPNYAHVLDEL 285 Query: 283 CKSAKAAALSGQLEEADQI----AQIYFSLVKRV 312 A++ + E ++ A+ + L + Sbjct: 286 MSLLHQIAMTQVVPEVCKLETISARAIYKLAGSI 319 >gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Ames] gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. 'Ames Ancestor'] gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Sterne] gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis str. A2012] gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227812696|ref|YP_002812705.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229604772|ref|YP_002864674.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. CNEVA-9066] gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Western North America USA6153] gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Kruger B] gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Vollum] gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Australia 94] gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str. Ames] gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. 'Ames Ancestor'] gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. Sterne] gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|226325913|ref|ZP_03801431.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758] gi|225205455|gb|EEG87809.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758] Length = 522 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPAEFEDVKGQDHIITTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + N VD IR IR Sbjct: 66 HPVDGSPCGECT------MCKNIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 111 VSYRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + L++L ++ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFKRITIDTIAARLDELMKKEQVEVEEKAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y+ D + ++ +++SQD + E +++ Sbjct: 227 FYLGQKLTYDHVLEVLGAVDTDVFSRLLRQIISQDVGKVLATVEELVMQ 275 >gi|253996278|ref|YP_003048342.1| DNA polymerase III subunits gamma and tau [Methylotenera mobilis JLW8] gi|253982957|gb|ACT47815.1| DNA polymerase III, subunits gamma and tau [Methylotenera mobilis JLW8] Length = 564 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 140/353 (39%), Gaps = 37/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +CN ++ D + + + N + VD +R + Sbjct: 65 ETGITAKPCGVCNA------CTEIDKGRFVDLIEVDAASNTQ---------VDAMRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTAGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ ++ L+ Q I + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLRQMAGTSITSHLQNILTQENIAFEPTALHLISRAAAGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + +H L + Q+ D LL D + + I A L Sbjct: 226 AYGGQTVHESEVRAMLGAIDQSYLYQLLDALLVNDGNSLINQAKAMEERSISFDAAFNDL 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA-RECNDLYFRD 343 + L + + + V ++L R+ + L + E LY++ Sbjct: 286 AQLLHQIA--------VAQTVPESVAHDLPEREALLSLAQRIPAETLQLYYQI 330 >gi|157961334|ref|YP_001501368.1| DNA polymerase III subunits gamma and tau [Shewanella pealeana ATCC 700345] gi|157846334|gb|ABV86833.1| DNA polymerase III, subunits gamma and tau [Shewanella pealeana ATCC 700345] Length = 948 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 149/349 (42%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCSA------CVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL SL+++ + L + ++ +S + AA GS+ A+ + + + Sbjct: 170 CLQFNLKSLTQDEIGAQLNHILTAEQLTFEESALTLLAKAANGSMRDALSLTDQAIAFGA 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSA 286 ++ + ++ +++ + ++ +A + ++ L E +L+ + + Sbjct: 230 GQVKLEQVQTMLGSIDEKHVIALLEALAKADVMDLMRVTAKVLSFGAEPEEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q++ + S ++ Q+ + LL R+ Sbjct: 290 HQITLTQFAPAAAQMSLYSEQIKAFAQQLSA---EQVQLYYQLLLTGRK 335 >gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis CI] gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar anthracis str. CI] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ ++ L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSSQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ ++ L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSSQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L] gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ ++ L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSSQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum DSM 5427] gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum DSM 5427] Length = 537 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 128/338 (37%), Gaps = 34/338 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L S R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKYRPYIFDDVVGQGHIVRTLKNQINSHRVAHAYLFSGSRGTGKTSIAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + C K+++ A + + + + + VD IR I Sbjct: 66 EPVNGSACGKC------ETCKRISDGAGINIIEIDAASHN---------GVDNIREINEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYTPAVGKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTDPQKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L + KI + ++ A G + A+ IL Sbjct: 171 QRFDFKRISAKEIEETLISYMQTEKIDIEEKALAYIARLADGGMRDALSILEQSISFYFG 230 Query: 238 SYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDF-------------LIEFILKEI 282 I L + A+ + ++ D + +D + + +L+ Sbjct: 231 ETITLDKVLYLVGAVDSNILFEMIDAIAGKDATKVLELCEEVNRQGRSMRQFVSDLLEHS 290 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 A G +E D + +L K+ S L Sbjct: 291 RNLLVAKTTKGGVEVLDYSLEYIEALKKQASDISTNEL 328 >gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. A1055] gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 562 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|325128498|gb|EGC51376.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis N1568] Length = 709 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAAYAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061] gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061] Length = 570 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + ++ D + + + N VDEIR IR Sbjct: 66 KSPVSEPCNECDA------CKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ ++++ + + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + I + Q + Q+A+ + Q+ +A D L E + + Sbjct: 227 FSGEQLTIDDALLITGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQ 274 >gi|225575493|ref|ZP_03784103.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM 10507] gi|225037290|gb|EEG47536.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM 10507] Length = 534 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 143/348 (41%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E I L+ + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDNFSDVKGQEHIVTTLTNQIKADRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + + + + + + N VD IR IR Sbjct: 66 HPVDGSPCNEC------ETCRAIQAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYRPTQGRYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F +S + K L+ L +I + +V AA GS+ A+ +L Sbjct: 171 QRYDFRRISIETISKRLQDLMDKEQIQVQEKAIRYVAKAADGSMRDALSLLDQCIAFYLG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 + +D++ E + ++Q+ D ++Q + + +I+ + + Sbjct: 231 QELTYDKVLDVLGAVDTETFSKLLRQVIDGKVTQAIQTLENLVIQGRELGQFVADFTWYM 290 Query: 287 KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L E A+++ + +L++ M +++ + S+ Sbjct: 291 RNLLLVKTSENAEEVIDVSSENLLQLQEESKMVDVETLMRYIRVFSEL 338 >gi|225026633|ref|ZP_03715825.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353] gi|224956003|gb|EEG37212.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353] Length = 571 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 38/332 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPSDFDEVKGQDAIVQTLRNQIIYNRIGHAYLFCGTRGTGKTSIAKLFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + + D L + + N V+ IR IR Sbjct: 66 HPVNGNPCNAC------PSCQAINNQSSLDVLEIDAASNN---------GVENIRDIREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYSPVEGRYKVYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEKHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L E+ K+ + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QKYDFKRISVDTITNHLVSLMEKEKVDADEKALRYIARAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 Y+ D + + +L+ D A D + I L + Sbjct: 227 FYLGQTLTYDNVLEVLGTADTSVFSALLRNILNHDSIAALDIIDSMITEGRELSQFLSDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + + E A++ + + + Sbjct: 287 LWYLRNLLILKDQEGAEESLDMSKETIAALKE 318 >gi|229083335|ref|ZP_04215695.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44] gi|228699982|gb|EEL52607.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44] Length = 562 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S +++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + +E + + +I D+++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDDMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + ++Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDDQFRMLSEAMQPETIYE------IIHTLSKGQQ 338 >gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] Length = 562 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 TVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus SAFR-032] gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus pumilus SAFR-032] Length = 570 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + ++ D + + + N VDEIR IR Sbjct: 66 KSPVSEPCNECDA------CKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ ++++ + + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + I + Q + Q+A+ + Q+ +A D L E + + Sbjct: 227 FSGEQLTIDDALLITGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQ 274 >gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] Length = 763 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 33/326 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + S D L + + N +DEIR +R Sbjct: 66 HGPTDHPCNEC------SVCKSILSGQSMDVLEIDAASNR---------GIDEIRALRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + A NALLK++EEPP V+FI + + TI SRC Sbjct: 111 VKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ +++ + L+ + D+ + + A G + A+ IL Sbjct: 171 QRYTFRRITSDDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + +LI + +++ + + L + D ++ + + + AL+ Sbjct: 231 EITPAVVEELIGLVSKDWII----KFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALT 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMY 318 L A + + +Y Sbjct: 287 QHLR-----ALLIAKVAPDAEELKVY 307 >gi|218901224|ref|YP_002449058.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] Length = 562 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 143/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + A+ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGAISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ ++ L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSSQLEHMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|332142051|ref|YP_004427789.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii str. 'Deep ecotype'] gi|327552073|gb|AEA98791.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 153/353 (43%), Gaps = 39/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P CN K++ D L + + K V++ R + Sbjct: 65 EEGQGANPCGQCNT------CKEIEQGNYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYKPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++S + L+Q ++ + AA GS+ A+ + + Sbjct: 170 CLQFNLKAMSREQIVGQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIAQGG 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-----ILKEICKSA 286 +++++S + D++ + + L+ + + ++ ++ ++ D + + E+ Sbjct: 230 NQVMASVVTDMLGLMDKNQLLKVIHAVVNKSPAEVLQLVNDIAEQAPDYDNVHSELASLL 289 Query: 287 KAAALSGQLEEADQI----AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 AL+ + EA ++ A+ F L K + A + Q+++ + + R+ Sbjct: 290 HQIALTQWVPEACKLETTSAKAIFQLAKTISAEQV------QLLYQIALQGRK 336 >gi|313902767|ref|ZP_07836164.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter subterraneus DSM 13965] gi|313466887|gb|EFR62404.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter subterraneus DSM 13965] Length = 781 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 36/338 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P + G E + + L+ +GR+ HA LF G +G GK ++ A V Sbjct: 8 LYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNCQ 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ +++ + D L + + N +DEIR +R Sbjct: 68 SPEGVEPCNRCD------LCREINDGSTMDVLEIDAASNR---------GIDEIRELRER 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 113 VRYAPARGRYKVYIIDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRC 172 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F+ LS + + LE + + + A G + A+ +L D Sbjct: 173 QRFDFHRLSPEQIVQRLEAVCTAMGVEAEPEALRLLARLAEGGLRDALSLLDQCLAMGGD 232 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF------LIEFILKEICKSA 286 ++ ++ +L+ + E L + + + + + D L + + + Sbjct: 233 RLEVAVVTELLGLAPGEGILALTRAVVEGDMGAGLRAVADLAAQGVDLAQALRDWVACWR 292 Query: 287 KAAALSGQLE------EADQIAQIYFSLVKRVHAFSMY 318 AL L+ + +A L + + + Sbjct: 293 DLLALRSGLDSRHLLYAGEDLAARLEPLARTLDDATAL 330 >gi|304385469|ref|ZP_07367814.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus acidilactici DSM 20284] gi|304328676|gb|EFL95897.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus acidilactici DSM 20284] Length = 578 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 35/338 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + + HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + L+D + + + N V+EIR IR Sbjct: 66 YLKDGEPCNEC------ATCRAITDGNLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + LEQ I + AA G + A+ IL D++IS Sbjct: 171 QRFDFKRITPTQSYDRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSIL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + + AL + +LL Q +L + K+ + + L L+E Sbjct: 227 FGNETVTM---DNALLVTGSVNQQLLDQ-------YLTQIFEKDTPAALET--LHQILDE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ L+ +Y D + + LS E Sbjct: 275 GKDGQRLIEDLIAVERNLLLYQEDPQLVKEQSLSDLSE 312 >gi|270291184|ref|ZP_06197407.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4] gi|270280580|gb|EFA26415.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4] Length = 578 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 35/338 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + + HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + L+D + + + N V+EIR IR Sbjct: 66 YLKDGEPCNEC------ATCRAITDGNLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + LEQ I + AA G + A+ IL D++IS Sbjct: 171 QRFDFKRITPTQSYDRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSIL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + + AL + +LL Q +L + K+ + + L L+E Sbjct: 227 FGNETVTM---DNALLVTGSVNQQLLDQ-------YLTQIFEKDTPAALET--LHQILDE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ L+ +Y D + + LS E Sbjct: 275 GKDGQRLIEDLIAVERNLLLYQEDPQLVKEQSLSDLSE 312 >gi|187923816|ref|YP_001895458.1| DNA polymerase III subunits gamma and tau [Burkholderia phytofirmans PsJN] gi|187715010|gb|ACD16234.1| DNA polymerase III, subunits gamma and tau [Burkholderia phytofirmans PsJN] Length = 893 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 133/352 (37%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYDAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAADLRRFAEALSAEQVQLFYQIATIGRS 336 >gi|304387172|ref|ZP_07369415.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis ATCC 13091] gi|304338739|gb|EFM04850.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis ATCC 13091] Length = 738 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LLS+ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLSKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPSALAHDDPDSDILHRLAQTI 348 >gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 562 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L ++ HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++ + + F+ +FI Sbjct: 231 RVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ ++ L LE + + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSSQLERMLERVM-VDEQFRMLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|114563577|ref|YP_751090.1| DNA polymerase III, subunits gamma and tau [Shewanella frigidimarina NCIMB 400] gi|114334870|gb|ABI72252.1| DNA polymerase III, subunits gamma and tau [Shewanella frigidimarina NCIMB 400] Length = 939 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 73/349 (20%), Positives = 149/349 (42%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPAKFEQMVGQSHVLMALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 ETGVTATPCGECSS------CIEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPHKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL SLS++ + K LE Q K+ + AA GS+ A+ + + + Sbjct: 170 CLQFNLKSLSQDEISKQLEYVITQEKLPFESQALSLLAKAANGSMRDALSLTDQAIAFGS 229 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSA 286 +++ + ++ +++ L ++ + D + + L E +L+ + + Sbjct: 230 GQVMLTQVQTMLGSIDEQHVLALLKALCDADVGPLMQTVAKVLAFGADAEEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q + +V + ++ Q+ + +L R+ Sbjct: 290 HQITLTQFAPAAAQQSLFSEQIVAFAQQLAP---EQVQLYYQMLLNGRK 335 >gi|325134576|gb|EGC57220.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M13399] Length = 709 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus flavithermus WK1] gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1] Length = 559 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 117/284 (41%), Gaps = 24/284 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E + K L ++ HA LF G +G GK ++ +A V Sbjct: 6 LYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + ++ D L + + N VDEIR IR Sbjct: 66 HRPTAEPCNEC------PTCLGIMNGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPTSAPYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + ++ L+ + I + + AA G + A+ +L D Sbjct: 171 QRFDFRRIELKSIVSRLKTVVTEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDD 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 ++ + + Q + + ++ + ++ D + + Sbjct: 231 RVLLEDVLAVTGAVSQRKIADLIHAMYEKKTVEALRLFQDLMEQ 274 >gi|328954114|ref|YP_004371448.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] Length = 546 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 41/342 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I + L SGR+ HA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQNFDEVVGQEHITRTLKNALESGRVAHAFLFSGPRGVGKTSIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D L + + N +DE+R +R Sbjct: 65 AEGPAPTPCNRCQS------CVEITQGHSLDVLEIDGASNR---------GIDEVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP +FI+ + S + TI SR Sbjct: 110 NIKYLPAHGSYKVFIIDEVHMLTKEAFNALLKTLEEPPPHAIFIMATTESHKVPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F LS + L Q + A G + A +L D++I Sbjct: 170 CQRYDFKRLSTAAIQAHLANLTAQEGWHLAPEGLLLIAQEAEGGMRDAQGLL----DQVI 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + P L + Q + +L++ D L E ++ Sbjct: 226 TFGGTEVSPPEIARILGVTDRLLLLQTLEAILNRQAAQLLDILAELHEHGHDLRRFFHDL 285 Query: 283 CKSAKAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNL 320 ++ ++ E ++A + + L + ++ +L Sbjct: 286 LFFSRHLVIAALGPEVRRLADLADQEWDRLQEMARQTNLAHL 327 >gi|307729576|ref|YP_003906800.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. CCGE1003] gi|307584111|gb|ADN57509.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1003] Length = 954 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 133/352 (37%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL ++ + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALAQGDGAAVLAIADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRVA-WAQFAPSSVLDEWPEAGDLRRFADTLSAEQVQLFYQIATIGRS 336 >gi|194468110|ref|ZP_03074096.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri 100-23] gi|194452963|gb|EDX41861.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri 100-23] Length = 611 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 134/343 (39%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + L+D + + + N V+EIR IR Sbjct: 66 HSKDGEPCNEC------EICKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + LEQ ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAEDAFDRMKYILEQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y I AL M+ I DE +D + + LI F Sbjct: 231 EVKLDDALLVTGSVTKQLLKKYFIEISKHEGATALNTMKDILDE--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + +S + + + + +V+ + ++Y + Sbjct: 289 IRDILLYQESPSLISVESTGLKK--EDFEEIVQLASSATLYQM 329 >gi|121728180|ref|ZP_01681215.1| cell division inhibitor [Vibrio cholerae V52] gi|121629577|gb|EAX62000.1| cell division inhibitor [Vibrio cholerae V52] Length = 540 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 141/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S +N+ + L++ KI + + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVDNIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIADE---------LLSQDQKIAFDFLIEFILKEIC 283 ++ S I ++ ++AL +Q I+ + + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALNLLQAISQQTPQAVMECIDTLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLAKVL 319 >gi|218132674|ref|ZP_03461478.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC 43243] gi|217992400|gb|EEC58403.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC 43243] Length = 540 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKWRPADFDDVKGQDAIVTTLRNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K +A+ + + + + + N V++IR+IR Sbjct: 66 HPVDGRPCGEC------AMCKSIAAGSSMNVIEIDAASNN---------GVEDIRKIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VQYSPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTETHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + LE+L I D ++ AA GS+ A+ +L D+ ++ Sbjct: 171 QRYDFKRISIETITARLEELMKAENINVEDKALRYIAKAADGSLRDALSLL----DQCLA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y+ D + + ++ +L+ D L + I++ Sbjct: 227 FYLGQDLKYDNVLEVLGAVDTEVFSRLLRMVLAADTTGCIRLLEDLIMQ 275 >gi|73663587|ref|YP_302368.1| DNA polymerase III gamma and tau subunits [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496102|dbj|BAE19423.1| DNA polymerase III gamma and tau subunits [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 570 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 ERSDGEPCNEC------AICKGITRGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S+ + + L E I ++ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISQEEIVERLKFVAESQAIEYDEAALNFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + + ++ E++ D + AF +FI + Sbjct: 227 FGDEHLTLEDALNVTGSVDAKALNELFKEVVEGDVRNAFSTYHQFISQ 274 >gi|254805224|ref|YP_003083445.1| putative DNA polymerase III tau and gamma chain [Neisseria meningitidis alpha14] gi|254668766|emb|CBA06660.1| putative DNA polymerase III tau and gamma chain [Neisseria meningitidis alpha14] Length = 710 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|186475716|ref|YP_001857186.1| DNA polymerase III subunits gamma and tau [Burkholderia phymatum STM815] gi|184192175|gb|ACC70140.1| DNA polymerase III, subunits gamma and tau [Burkholderia phymatum STM815] Length = 793 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 74/351 (21%), Positives = 138/351 (39%), Gaps = 35/351 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEENIAHEAQALRLLARAADGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + ++ Q Y + ++ D L++ E L+ + S L Sbjct: 230 NQVTEEAVRGMLGALDQSYLI----RLLDALVAGGGAAVLSVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEE--ADQIA-----QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L + Q A + + + ++ Q+ + + + R Sbjct: 286 ASLLHKIAWAQFAPSSVLEEWPEAADLRRFADALSPEQVQLFYQIATIGRS 336 >gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri JV-V03] gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri JV-V03] Length = 602 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 38/354 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADRGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-----KEICKSAKA 288 K+ Y D + I A +K++Q+ +LL + AF+ + + K I + Sbjct: 231 KV--KYDDALKITGYA-AQEKIEQVLLDLLKGETSEAFEIVHNLLQDGASTKNILDELIS 287 Query: 289 AALSGQL-----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + G L +EA + + Y + + ++ YNL Q L+ R N Sbjct: 288 LTVKGMLVIKSNKEATFLTKDYAAELAKIPEEKFYNL--VQAANTALNDLRYTN 339 >gi|238020685|ref|ZP_04601111.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147] gi|237867665|gb|EEP68671.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147] Length = 820 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 135/342 (39%), Gaps = 31/342 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L +GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQQHVVKALQNALANGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGHC------ATCQAIDAGRFVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL + +++ + L I + + AA GS+ A+ +L Sbjct: 170 CLQLVLRNMTAQQVSDHLAHVLNAEHIAYEPAALTLLGRAAQGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIAFDFL-IEFILKEICKSA 286 + ++I Y + ++ ++ L+++ ++ L + +L E+ Sbjct: 230 GSVQEADVRNMIGAVDNRYLFELLEILSQKNGAALIAKASEMHSQSLGFDSVLAELALLL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + AL + A + + +N ++ Q+ + Sbjct: 290 QRIALLQTVPTAIAADDPEHDRLHAL--ARAFNSEQIQLYYQ 329 >gi|54308210|ref|YP_129230.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum SS9] gi|46912638|emb|CAG19428.1| Hypothetical DNA polymerase III, subunits gamma and tau [Photobacterium profundum SS9] Length = 753 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 135/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + LS R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPYQFSDVVGQSHVLTALSNALTHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGITATPCGQCGT------CKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + + L Q + + AA GS+ A+ + + Sbjct: 170 CLQFHLKHLDNDQIQSQLSNVLTQENVDFEPKALSLLSRAAEGSMRDALSLTDQAIALGN 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQI----ADELLSQDQKIA-----FDFLIEFILKEI 282 ++ + + ++ + AL ++ + A+ + +++A +D L+ + ++ Sbjct: 230 GQVHADSVSMMLGTLNTDQALFLLEAVSGGQANTAMGGLEELASVGVEWDSLLRELAAQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+ + A +L + Sbjct: 290 HRVAMHQALPAALDMSAPDADRIITLSSVM 319 >gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] Length = 601 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 21 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 80 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 81 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 126 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 185 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 186 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 245 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 246 NGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIITG 301 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 302 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNYR 358 >gi|299542068|ref|ZP_07052384.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis ZC1] gi|298725383|gb|EFI66031.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis ZC1] Length = 595 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 40/328 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + Sbjct: 8 RVYRPQSFREMSGQTHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHA 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 SK P C + + D + + N V+EIR I + Sbjct: 68 PSKEPCNEC------ATCISITDGSHPDVIEFDAASNS---------RVEEIRDIIEKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + ++V +ID V ++ +A NALLK+LEEPP +FIL + + +TI SRC Sbjct: 113 FAPASSRYKVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F LS N++ + LE + + + + +A G + A+ +L D+++S Sbjct: 173 FDFKRLSTNDIIERMKVVLEDIDLPYEEQGLKVIAQSAAGGMRDALSLL----DQVVSFS 228 Query: 240 IDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK---------EICKS 285 + + + + Q +A+ L +D L + I ++ Sbjct: 229 GEKLKLEDTLLVTGSISQDIFYDLAEALKVKDVAQMLALLEQLIADGKDPLRLSEDLITF 288 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVH 313 + L L+ +D +A++ + Sbjct: 289 FRDLLL---LQTSDDLAELLELVSPEER 313 >gi|320155732|ref|YP_004188111.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus MO6-24/O] gi|319931044|gb|ADV85908.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus MO6-24/O] Length = 730 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 148/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP C+ +++ D L + + K V++ R + Sbjct: 66 TGITSAPCGQCDT------CREIEEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L ++ + +++ L+ + + + AA GS+ A+ + Sbjct: 171 LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A +D L++ Sbjct: 231 QIETDLVSHMLGTIDTDQAI-HLLEAISSKQPQVAMDKIQQLAQ------NGAEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A L L++A A+ L + + + Q+ + + K R+ Sbjct: 284 QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDV------QLFYQIALKGRD 336 >gi|315644459|ref|ZP_07897592.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex V453] gi|315280209|gb|EFU43502.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex V453] Length = 573 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 134/344 (38%), Gaps = 45/344 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + G + I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C +++ S A+ D + + N V+EIR +R Sbjct: 66 HGPAEEPCNEC------EACRRITSGAVMDVQEIDAASNR---------GVEEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VKYAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L + + I ++ + G + A+ IL D+I S Sbjct: 171 QRFDFRRVSLDEQTGRLQQICGEEGITADHEALQYIARLSDGGMRDALSIL----DQIAS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 SY ++ + A ++ ++A + D + + +F+ ++ + Sbjct: 227 FTGGTVSYQQVMDMTGG-IASEQFGRLASAVKQGDAGLVLQIVEQFMQEGKSADKCMENL 285 Query: 283 CKSAKAAALSGQLEEADQIAQI------YFSLVKRVHAFSMYNL 320 + + + +AD++ + + ++ + Sbjct: 286 LYYFRDLLMIKMVPDADKLTDRVLNPAEFQEMANAFSRDELFQM 329 >gi|239637703|ref|ZP_04678673.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri L37603] gi|239596728|gb|EEQ79255.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri L37603] Length = 566 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESEYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + + + ++ +++ D K +F +F+ Sbjct: 227 FGDEHLTLQDALNVTGSVDEASLNELFKDVVKGDVKASFTRYHQFV 272 >gi|222053486|ref|YP_002535848.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] Length = 576 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 130/349 (37%), Gaps = 41/349 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLIGQEHVSRTLQNAIDTGRIAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C P ++ D + + N VD+IR +R Sbjct: 65 EHGLTTEPCNSC------PSCSEITDGNSVDVFEIDGASNT---------GVDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSKSRYKIFIIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L +Q K+ V GS+ ++ L D+++ Sbjct: 170 CQRFDFKRIPLQKIVDRLRYIVDQEKVSISSDALAIVARKGDGSMRDSLSTL----DQVL 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + + + L + + + + + S+D K + + + +E+ Sbjct: 226 AFCGENVADDDVASLLGVVDRRLLLEASQAVFSRDNKSVLEIVKQVDSFGYSMRQFCQEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYF----SLVKRVHAFSMYNLDRRQMIF 327 + A+ ++ A I + L + +L R I Sbjct: 286 IDHFRNLAILRAIDNASDILDLSETECSELKNLAATVATADLQRHLTIL 334 >gi|221307828|ref|ZP_03589675.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. 168] gi|221312150|ref|ZP_03593955.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317083|ref|ZP_03598377.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. JH642] gi|221321346|ref|ZP_03602640.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. SMY] gi|255767015|ref|NP_387900.2| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp. subtilis str. 168] gi|239938906|sp|P09122|DPO3X_BACSU RecName: Full=DNA polymerase III subunit gamma/tau gi|225184642|emb|CAB11795.2| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis subsp. subtilis str. 168] Length = 563 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ ++ + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ A ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRELSEQIPAQALYEM------IDILNKSHQ 338 >gi|296131618|ref|YP_003638865.1| DNA polymerase III, subunits gamma and tau [Thermincola sp. JR] gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR] Length = 537 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G + I + L + R+ HA LF G +G GK T +A + Sbjct: 6 LYREWRPQIFQDIVGQQHITRTLQNAIKANRIAHAYLFCGPRGTGKTTTAKVFAKALNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P CN ++ D L + + N +DEIR +R Sbjct: 66 EGPNAEPCNQCNN------CIRITDGVSMDVLEIDAASNR---------GIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +R+ +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKFSPTEGRYRIYIIDEVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L E L++ + + A G + A+ +L D+ I+ Sbjct: 171 QRFDFRRIGTGEIVDRLRDVCESLQVQTDEETLTLLAKTAEGGLRDALSVL----DQCIA 226 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKE 281 + + L + + ++ D +++D A FL++ I+ + Sbjct: 227 FGGQRVTVEEVNTVLGTVDQELLFKMVDYFINKDSTSAL-FLVDDIVNQ 274 >gi|153217534|ref|ZP_01951215.1| DNA polymerase III tau subunit [Vibrio cholerae 1587] gi|124113525|gb|EAY32345.1| DNA polymerase III tau subunit [Vibrio cholerae 1587] Length = 559 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|228989232|ref|ZP_04149226.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM 12442] gi|228770507|gb|EEM19077.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM 12442] Length = 562 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQNFEDVVGQKHVTKTLQNAILQEKASHAYLFSGPRGTGKTTIAKVFAKTINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S +++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 ++ Y+ + +E + + +I D+++S+ + F+ +FI Sbjct: 231 VVTTEDVLAVTGSVSQQYLGNLVECMRENDVSRALRIIDDMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRMLSEAMQPEMIYE------IIHTLSKGQQ 338 >gi|161524619|ref|YP_001579631.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|189350625|ref|YP_001946253.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|160342048|gb|ABX15134.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans ATCC 17616] gi|189334647|dbj|BAG43717.1| DNA polymerase III gamma and tau subunit [Burkholderia multivorans ATCC 17616] Length = 821 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGR 335 >gi|238922752|ref|YP_002936265.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale ATCC 33656] gi|238874424|gb|ACR74131.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale ATCC 33656] Length = 523 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 30/332 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P + + + + + + + N VD IR+IR Sbjct: 66 HPVDGSPCGEC------PSCRAITEGSSMNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VTYRPTEGRYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F+ +S + + L EQ + + +V A GS+ A+ +L H Sbjct: 171 QRYDFHRISIDTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 + ++++ E + +++I DE ++ +I + + E ++ + Sbjct: 231 EKLTYENVLEVLGAVDTEVFSRLLRRILDEDVTGAIRILGELIDEGRELSQLVNDFTWYM 290 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + L ++ +++ I ++ + + Sbjct: 291 RNLLLLQSSDDMEEVLDISKDNLEALKEEAAL 322 >gi|325130515|gb|EGC53270.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis OX99.30304] Length = 709 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|326423917|ref|NP_760873.2| DNA polymerase III subunits gamma and tau [Vibrio vulnificus CMCP6] gi|319999294|gb|AAO10400.2| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus CMCP6] Length = 734 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 148/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP C+ +++ D L + + K V++ R + Sbjct: 66 TGITSAPCGQCDT------CREIEEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L ++ + +++ L+ + + + AA GS+ A+ + Sbjct: 171 LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A +D L++ Sbjct: 231 QIETDLVSHMLGTIDTDQAI-HLLEAISSKQPQVAMDKIQQLAQ------NGAEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A L L++A A+ L + + + Q+ + + K R+ Sbjct: 284 QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDV------QLFYQIALKGRD 336 >gi|239996413|ref|ZP_04716937.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii ATCC 27126] Length = 557 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 150/353 (42%), Gaps = 39/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P CN K + D L + + K V++ R + Sbjct: 65 EEGQGANPCGQCNT------CKDIEQGNYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYKPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++S + L+ + ++ + AA GS+ A+ + + Sbjct: 170 CLQFNLKAMSREQIVGQLQHILEHEQLPFEPQALALLARAAQGSMRDALSLTDQAIAQGG 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-----ILKEICKSA 286 +++++S + D++ + + L+ + + + + ++ D + + E+ Sbjct: 230 NQVLASVVTDMLGLMDKNQLLKVVHAVVSKSPADVLQLVNDIAEQAPDYDNVHSELASLL 289 Query: 287 KAAALSGQLEEADQI----AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 AL+ + EA ++ A+ F L K + A + Q+++ + + R+ Sbjct: 290 HQIALTQWVPEACKLETTSAKAIFQLAKTIPAEQV------QLLYQIALQGRK 336 >gi|311070666|ref|YP_003975589.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus 1942] gi|310871183|gb|ADP34658.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus 1942] Length = 564 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 147/356 (41%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + ++ V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLKKKFSHAYLFSGPRGTGKTSAAKIFSKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVEEPCNNC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 F ++ + K +E ++ + D + AA G + A+ +L D Sbjct: 171 QRFDFKRITPQAIVGRMKKIVEAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFSGD 230 Query: 234 KII------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 ++ YI + E + + +ELL Q + A + + I Sbjct: 231 ELTVDDALLITGAVSQHYIGKLAQSLHEKQVSGALETLNELLQQGKDAAK-LIEDMIFYF 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + +L +++ A ++Y + +L+K+ + Sbjct: 290 RDMLLYKTAPGLEGVLEKV-KVDDTFRALSEQIPAPALYEM------IDVLNKSHQ 338 >gi|170692333|ref|ZP_02883496.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis C4D1M] gi|170142763|gb|EDT10928.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis C4D1M] Length = 996 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 133/352 (37%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL ++ + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + K+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVNEEAVRGMLGALDQSYLIRLLDALAQGDGATVLTIADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAGDLRRFAETLSAEQVQLFYQIATIGRS 336 >gi|325204430|gb|ADY99883.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240355] Length = 706 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LLS+ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLSKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHYDPDSDILHRLAQTI 319 >gi|467409|dbj|BAA05255.1| DNA polymerase III subunit [Bacillus subtilis] gi|580914|emb|CAA34877.1| dnaZX [Bacillus subtilis] Length = 563 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVDEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ ++ + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFIL------------- 279 D++ + + Q +A L ++ A + L E + Sbjct: 227 FSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286 Query: 280 ---KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + L +++ A ++Y + +L+K+ + Sbjct: 287 FYFRDMLLYKTAPGLEGVLEKV-KVDETFRELSEQIPAQALYEM------IDILNKSHQ 338 >gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] Length = 565 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCF 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|330684669|gb|EGG96371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU121] Length = 566 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESEYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + + + ++ +++ D K +F +F+ Sbjct: 227 FGDEHLTLQDALNVTGSVDEASLNELFKDVVKGDVKASFTRYHQFV 272 >gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] Length = 586 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 66 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 287 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNYR 343 >gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] Length = 636 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 124/316 (39%), Gaps = 35/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G ++ L ++ HA LF G +G GK + +A + Sbjct: 7 VLYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKLLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + D + + + N VD+IR +R Sbjct: 67 QSPIDYNPCGEC------VCCQD----SNTDIIEMDAASNN---------GVDDIRDLRE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID V ++ A NALLK+LEEPP ++FIL + I +TI SR Sbjct: 108 KVNYAPAFGKKKVYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSR 167 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S++++ + E + + + A G + A+ +L K+ Sbjct: 168 CQRYDFRRISQDDIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVE 227 Query: 237 S--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI---------EFILKEICKS 285 + D+I I +K+ + + + + A + F L+E+ Sbjct: 228 GKVTLQDIIEIT-GAVDTRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIY 286 Query: 286 AKAAALSGQLEEADQI 301 + ++ +L E + Sbjct: 287 LRDILVNRKLGEKATL 302 >gi|172060787|ref|YP_001808439.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria MC40-6] gi|171993304|gb|ACB64223.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria MC40-6] Length = 813 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQISFELQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFADALSPEQVQLFYQIATVGR 335 >gi|283768194|ref|ZP_06341108.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus H19] gi|283461139|gb|EFC08224.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus H19] Length = 565 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7] Length = 586 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 66 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 287 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNYR 343 >gi|115351816|ref|YP_773655.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria AMMD] gi|115281804|gb|ABI87321.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria AMMD] Length = 824 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQISFELQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGNGPEILTIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFADALSPEQVQLFYQIATVGR 335 >gi|319410691|emb|CBY91070.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis WUE 2594] Length = 709 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL ++++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|254490491|ref|ZP_05103677.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxidans DMS010] gi|224464235|gb|EEF80498.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxydans DMS010] Length = 569 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 37/335 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L R+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKSFEEVVGQQHVLRALINGLDQNRLHHAFLFSGTRGVGKTTLARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C ++ S D + + + K VD+ R + Sbjct: 65 EQGVSSTPCGVCQS------CTEVDSGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 110 NVQYAPSQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL L + LEQ I + + AA GS+ A+ +L Sbjct: 170 CLQFNLRRLELTQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + S ++ Q+ + I D LL QD K E + + Sbjct: 230 GEVTSESVFQMLGSISQDQLIL----ILDALLKQDGKALLAQSAELAALGRDFHVVFDFL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + + A + + + + L + F Sbjct: 286 LSALQQIATLQLVPDLEPVEANSPQLTELAAQFDP 320 >gi|325201859|gb|ADY97313.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240149] Length = 706 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|262276244|ref|ZP_06054053.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP 101886] gi|262220052|gb|EEY71368.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP 101886] Length = 708 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 139/334 (41%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPHQFRDVVGQSHVLTALANALDHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D L + + K V++ R + Sbjct: 65 EQGITSTPCGVC------ATCQEIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L + LEQ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKHLDVTQIKDQLSHVLEQESVPAETRALSMIARAAEGSMRDALSL----TDQAI 225 Query: 237 S---------SYIDLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFI 278 + +++ + A+ ++ +A+ + + + +D L++ I Sbjct: 226 ALGNGVVQERQVTEMLGTLSTDQAILLLEALAEGHANHVLACLTHLAEVGVEWDGLLKEI 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 ++ + A A AL ++ + A+ +L K V Sbjct: 286 ASQLHRVAMAQALPESVDGSSPDAERILALGKLV 319 >gi|228995415|ref|ZP_04155086.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17] gi|229003029|ref|ZP_04160887.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4] gi|228758229|gb|EEM07416.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4] gi|228764341|gb|EEM13217.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17] Length = 562 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKTINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S +++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 ++ Y+ + +E + + +I D+++S+ + F+ +FI Sbjct: 231 VVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDDMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRMLSEAMQPEMIYE------IIHTLSKGQQ 338 >gi|315650373|ref|ZP_07903444.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum DSM 3986] gi|315487300|gb|EFU77611.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum DSM 3986] Length = 515 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E I K L +GR+ HA LF G +G GK ++ A + Sbjct: 6 LYRKFRPSNFDEVVGQEAITKTLKNQLRTGRVSHAYLFCGTRGTGKTSIAKIMARALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P K + + + + + + N VD IR I+ Sbjct: 66 HPTEAGPCNEC------PTCKSILNETSINVVEIDAASNN---------GVDNIRDIKEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I T+ SRC Sbjct: 111 VQYPPTFGRYKVFIIDEVHMLSGGAFNALLKTLEEPPQYVIFILATTEVHKIPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + + L+ L + D D++ AA G++ A+ +L D+ IS Sbjct: 171 QRYDFKRIGIDTISQRLKTLCKSEGVDIEDRAVDYIAKAADGAMRDALSLL----DECIS 226 Query: 238 SY------IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D + + ++ D+++ + + L + I+ Sbjct: 227 FLQNEKITFDAVLDILGASDISIFNKLLDDIIDGNTVEVLNILNDAIVD 275 >gi|149375203|ref|ZP_01892975.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola DG893] gi|149360567|gb|EDM49019.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola DG893] Length = 654 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 129/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L + R+HHA LF G +G+GK T+G A + Sbjct: 17 VLARKWRPRTFEDMVGQEHVLQALIHALDNQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 76 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + VD++R + Sbjct: 77 ETGVTATPCGTCSS------CQEIQEGRFVDLIEIDAASRT---------GVDDMRELTD 121 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 122 NVQYSPTRGRFKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 181 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI--------- 227 CL ++ ++ L Q I + + AA GS+ A+ + Sbjct: 182 CLQFNLKRMTPEHIAGHLRYVLTQEGIPFEEPALWLLARAADGSMRDALSLTDQAIAFGN 241 Query: 228 -----------LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 L I + ++ + L ++ +I+D + D + L+ Sbjct: 242 QTLSGSDVSNMLGTIDQSDIENLVNALVEDDGPALLSEINRISD--FAPDYSVILADLLS 299 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + ++ L +A Q+ + L Sbjct: 300 LFHRVTMEQVVPGSVDNALGDAAQVESLARRLSAE 334 >gi|253577375|ref|ZP_04854692.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251843275|gb|EES71306.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 589 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 39/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P Q + G + I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRAWRPQSFQDMVGQQHIIRTLQNAIREQRLSHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ +++ + A+ D L + + N V+EIR +R Sbjct: 66 KGPAAEPCNECDA------CRRITAGAVMDVLEIDAASNR---------GVEEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + + +T+ SRC Sbjct: 111 VKYAPTEVRQKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRLPATVISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S L EQ I +++ + G + A+ IL D+I S Sbjct: 171 QRFDFRRVSLEEQSERLRMICEQEGIEAEKEAIEYIARLSDGGMRDALSIL----DQIAS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 SY ++ + + Q ++A LL D + F+ ++ + Sbjct: 227 FSGRKVSYQQVLDMTGGIASRQFA-ELAKTLLDGDIGGMLQMIDGFMQEGKSADKCMENL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + + + +AD++ + + Sbjct: 286 LYYFRDLLMVKMVPQADKLTERVLDPQDFAEIAEGF 321 >gi|134297921|ref|YP_001111417.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum reducens MI-1] gi|134050621|gb|ABO48592.1| DNA polymerase III, tau subunit [Desulfotomaculum reducens MI-1] Length = 540 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 116/305 (38%), Gaps = 24/305 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Y + G I + L ++ HA LF G +G GK T A + Sbjct: 6 LYRTWRPQYFSDIVGQRHITRTLQNALLQDKVAHAYLFCGPRGTGKTTTAKVLAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C + + D + + + N +DEIR +R Sbjct: 66 VPTSGEPCNDCEN------CRAVNEGNSVDVVEIDAASNR---------GIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +TG +V +ID V + A NALLK+LEEPP V+F+L + + + TI SRC Sbjct: 111 VKFAPSTGEKKVYIIDEVHMLTDQAFNALLKTLEEPPSHVVFVLATTEAHKVPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI-- 235 F + + + L+++ I + + AA G + A+ IL Sbjct: 171 QRFDFRRIKPDEMVGRLQEVAQGANIEVEEEALQLIAKAAEGGLRDALSILDQGAAFAEK 230 Query: 236 ---ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 ++ +Q+ ++ +A+ + K+ + + + L Sbjct: 231 TVTTEDIHSILGTVKQDILVKMTHCLAEGKAGEALKLVAEISNRGKDLRLFGREMTSFLR 290 Query: 293 GQLEE 297 G L E Sbjct: 291 GLLVE 295 >gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] Length = 586 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 66 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAVLSGNVRASLLILNEILGKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 287 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNYR 343 >gi|221198096|ref|ZP_03571142.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M] gi|221182028|gb|EEE14429.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M] Length = 818 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGR 335 >gi|70727533|ref|YP_254449.1| DNA polymerase III subunits gamma and tau [Staphylococcus haemolyticus JCSC1435] gi|68448259|dbj|BAE05843.1| DNA polymerase III gamma and tau subunits [Staphylococcus haemolyticus JCSC1435] Length = 571 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 26/275 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P Q + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NPQDGEPCNEC------AICKGITQGTNGDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + L E+ ++ + +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAIGTEQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + + AL + + L++ K D Sbjct: 227 FGDEHLTLQD---ALDVTGSVDEAALNELFKDVID 258 >gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] Length = 543 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 28/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I++ L S + HA + G +G GK ++G +A + Sbjct: 5 LYRKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAYMLTGPRGTGKTSIGKLFAKAINCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P CN KQ+ +++ D L + + N V++IR IR Sbjct: 65 HLVNGEPCNDCNQ------CKQIMNNSHPDILEIDAASNN---------GVEQIRDIREQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 VTYAPSVGKYKVYIIDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + +L + ++ ++ + + + A G + A+ +L D+ ++ Sbjct: 170 QRFDFRRIGQKDLIERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLL----DQTVA 225 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 I +++K++ LL+++ + E IL Sbjct: 226 FASGEITKNDVSEVVGRISIEKIEMCVQYLLTRNTTEILSLVNEVIL 272 >gi|325198577|gb|ADY94033.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis G2136] Length = 710 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR I Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREILE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|121635131|ref|YP_975376.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis FAM18] gi|120866837|emb|CAM10595.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis FAM18] gi|325138443|gb|EGC61009.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis ES14902] Length = 709 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL ++++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|331005832|ref|ZP_08329187.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC1989] gi|330420352|gb|EGG94663.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC1989] Length = 740 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 41/354 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFREMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ ++ D + + + K V++ R + Sbjct: 65 EVGVSSVPCNECSS------CIEINEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + LE+ + D+ + +A GS+ A+ + D+ I Sbjct: 170 CLQFNLKNMNPEKIVSHLQFVLEKEMVPFEDAGLWQLARSADGSMRDALSL----TDQSI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA--LSGQ 294 + I L + DQ + +D L I ++I + A A Sbjct: 226 AFGDGKITDVDVRTMLGTI----------DQSLVYDVLKGLIAEDIKQLLSAVANLSEHS 275 Query: 295 LEEADQIAQIYFSLVK------RVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 + + +A++ +L + A DR+Q+ + E LY++ Sbjct: 276 PDYSAALAELIATLHRIAIAQALPEAVDNSQGDRQQIYEFAQAITAEDIQLYYQ 329 >gi|325136513|gb|EGC59117.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M0579] Length = 738 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR I Sbjct: 94 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREILE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPNALAHDDPDSDILHRLAQTI 348 >gi|325208389|gb|ADZ03841.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis NZ-05/33] Length = 735 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQAIAMGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 259 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPNALAHDDPDSDILHRLAQTI 348 >gi|227891208|ref|ZP_04009013.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC 11741] gi|227867082|gb|EEJ74503.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC 11741] Length = 585 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 139/352 (39%), Gaps = 49/352 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + K L + + HA LF G +G GK + +A + Sbjct: 12 LYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCR 71 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 72 FSKEGEPCNEC------ETCKAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 117 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 176 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ + L+Q + D + AA G + A+ +L Sbjct: 177 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDN 236 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + +Y+ + AL+K+QQI ++ +D + LI + Sbjct: 237 NVTLDNALLVTGSVTQESLFNYLKFVLSKDTTNALKKIQQIVEQ--GKDANRLIEDLINY 294 Query: 278 ILKEIC-KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY----NLDRRQ 324 + + A G+L D + L ++++ +Y L+++Q Sbjct: 295 CRDLLLYQQAPEMVSDGELGLLD---DKFKELSQQINVTQLYQIIDELNKQQ 343 >gi|37680595|ref|NP_935204.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus YJ016] gi|37199343|dbj|BAC95175.1| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus YJ016] Length = 730 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 148/359 (41%), Gaps = 53/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP C+ +++ D L + + K V++ R + Sbjct: 66 KGITSAPCGQCDT------CREIEEGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 L ++ + +++ L+ + + + AA GS+ A+ + Sbjct: 171 LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D D+ I ++ I + + A+ K+QQ+A +D L++ Sbjct: 231 QIETDLVSHMLGTIDTDQAI-HLLEAISSKQPQVAMDKIQQLAQ------NGAEWDGLLQ 283 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + ++ + A L L++A A+ L + + + Q+ + + K R+ Sbjct: 284 QLATQLHRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDV------QLFYQIALKGRD 336 >gi|254672432|emb|CBA05798.1| DNA polymerase subunits gamma and tau [Neisseria meningitidis alpha275] Length = 739 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR I Sbjct: 94 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREILE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPNALAHDDPDSDILHRLAQTI 348 >gi|126667422|ref|ZP_01738394.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17] gi|126628178|gb|EAZ98803.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17] Length = 622 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 130/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L S R+HHA LF G +G+GK T+G A + Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALESQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + VD++R + Sbjct: 65 ETGITAKPCGVCGS------CREIQEGRFVDLIEIDAASRT---------GVDDMRELTD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYSPTRGRFKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ ++ L KI + + AA GS+ A+ + + + Sbjct: 170 CLQFNLKRMTPEHIAGHLNHVLTAEKIPFEEPALWLLARAADGSMRDALSLTDQAIAFGN 229 Query: 233 DKI----------------ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 ++ I S + + L ++ +IAD + D + L+ Sbjct: 230 QQLAASDVSSMLGTINQRDIESLVGTLVARDGPALLTEIGRIAD--FAPDYGVILADLLS 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + + L +A QI + L Sbjct: 288 LFHRVTMEQVVPGSADNALGDARQIQALAKKLSAE 322 >gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] Length = 562 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L ++ HA +F G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFGDVVGQKHVTKTLQNALLQEKVSHAYVFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVKYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S N++ + L D V AA G + A+ ++ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + Y+ + +E + + +I DE++S+ + F+ +FI Sbjct: 231 TVTSEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + +L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRALSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|167902380|ref|ZP_02489585.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei NCTC 13177] Length = 428 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +G L AQ + + + ++ Q+ + + + R Sbjct: 286 AGLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|323487365|ref|ZP_08092664.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum WAL-14163] gi|323694200|ref|ZP_08108376.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323399326|gb|EGA91725.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum WAL-14163] gi|323501673|gb|EGB17559.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 536 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + PV + G + I K L SGR+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPVSFDEVKGQDHIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C +Q+AS A + + + + N V+ IR IR Sbjct: 66 SPVDGSPCGEC------SMCRQIASSASLNVVEIDAASNN---------GVENIRDIRDQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F ++ + + L +L +I + +V AA GS+ A+ +L Sbjct: 171 QRYDFKRITIDTISARLHELTQAEQIDVEERALRYVAKAADGSMRDALSLLDQ 223 >gi|308389548|gb|ADO31868.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis alpha710] gi|325132376|gb|EGC55069.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M6190] Length = 738 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL ++++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAMGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 259 GSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPSALAHDDPDSDILHRLAQTI 348 >gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium NaphS2] gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium NaphS2] Length = 564 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 132/352 (37%), Gaps = 29/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E I + L +GR+ HA +F G +G+GK ++ +A + Sbjct: 5 VLARKWRPQVFEDVIGQEHITQTLVNAIKTGRLAHAYIFGGPRGVGKTSVARIFAKAINC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + + N +DEIR +R Sbjct: 65 AEGEPGIPCNRCRS------CREITEGNSVDVQEIDGASNR---------GIDEIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +R+ +ID V + A NALLK+LEEPP V FI + S + TI SR Sbjct: 110 SARYMPSASRYRIYVIDEVHMLTLPAFNALLKTLEEPPPHVKFIFATTESHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 C F ++ + LE++ + + + A GS+ A +L Sbjct: 170 CQRFDFKRIALQKIVAYLEKISGHEGVAIGTTALAMIAREAEGSMRDAESLLDQVVSFAG 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFD-----FLIEFILKEICKSA 286 DK+ + +++ I + + I + + + + I+ + + Sbjct: 230 DKVSDDQVPEILGIIDRGLIFESSSAIIEGAAPRCLAVVEKVYSRGYDIKEFYRALMAQF 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + +S E + I + M ++ Q++ + L + Sbjct: 290 RNLLVSLIAPEENLIDMSESDRKEIRRQAEMAGTEKLQVVLNFLISREDALR 341 >gi|227533726|ref|ZP_03963775.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188710|gb|EEI68777.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 578 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L +G+ HA LF G +G GK ++ A + Sbjct: 19 LYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 78 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 79 HLEDGEPDNTC------EICQAINNGSLTDVIEIDAASNN---------GVDEIRDIRDK 123 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 124 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 183 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 184 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 243 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 244 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYL- 302 Query: 280 KEICKSAKAAALSGQLEEA 298 +++ + +A L G LE++ Sbjct: 303 RDLLVNQQAPTLLGDLEKS 321 >gi|261377458|ref|ZP_05982031.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC 14685] gi|269146186|gb|EEZ72604.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC 14685] Length = 722 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 33/314 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIINQDGEALLAKAQEMAACAVGFDNALGELAMLL 289 Query: 283 CKSAKAAALSGQLE 296 A A+ L Sbjct: 290 QHLALIQAVPSALA 303 >gi|89094005|ref|ZP_01166949.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92] gi|89081679|gb|EAR60907.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92] Length = 632 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 35/320 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G E + K L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPAKFQEMVGQEHVLKALVNALDDDRLHHAYLFTGTRGVGKTSIARLFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ K++A D + + + K V++ R + Sbjct: 65 ETGVSSTPCGVCSA------CKEIAEGRFVDLIEVDAASRTK---------VEDTRELME 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTHGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + L Q +I + + +A GS+ A+ + D+ I Sbjct: 170 CLQFNLKNLIPERIVNHLTHVLTQEQISFEEPALWLLARSADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I L + DQ++ + L + +A A++ + Sbjct: 226 AFGAGQIAETDVRAMLGTI----------DQRLVYQMLYSLAAGD--ANALMQAVTDLAQ 273 Query: 297 EADQIAQIYFSLVKRVHAFS 316 + + LV +H + Sbjct: 274 FSPDYNTVLGDLVSVLHRIA 293 >gi|261392295|emb|CAX49821.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis 8013] Length = 709 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|302390663|ref|YP_003826484.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter oceani DSM 16646] gi|302201291|gb|ADL08861.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter oceani DSM 16646] Length = 571 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 74/359 (20%), Positives = 141/359 (39%), Gaps = 44/359 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L +G++ HA LF G +G GK + +A + Sbjct: 6 LYRRYRPRDFDEIVGQEAIVRTLKNQIRTGKIGHAYLFCGMRGTGKTSTARVFAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + D + + + N +D+IR +R Sbjct: 66 QGPTDTPCNRCRN------CLAINEGGMIDVIEMDAASNR---------GIDDIRTLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + G +RV +ID V + A NALLK+LEEPP+ V+FIL + + STI SRC Sbjct: 111 VNFPPSEGRYRVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPNKLPSTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 + F + L L+++ + D + ++ GS+ A+ +L + D Sbjct: 171 MRFDFRRVQTRELVSHLKRISAENGVEAEDKALALIARSSQGSMRDALSLLDKALAFGGD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI------------LKE 281 K+ +Y D + + +I+ + + D + E + L Sbjct: 231 KL--TYRDALSLF-GAVGDDLFFEISRAVKQRAPGRILDIIEEVVGLGKDLLRFTDDLMG 287 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 ++ ++ D + Y L ++S R+ I ++L + ++ Sbjct: 288 FYRNLLMVSIGADRNLVDVTDEEYGELEALAKSYS------REEILNILDLLKTASNDV 340 >gi|152973871|ref|YP_001373388.1| DNA polymerase III subunits gamma and tau [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022623|gb|ABS20393.1| DNA polymerase III, subunits gamma and tau [Bacillus cytotoxicus NVH 391-98] Length = 562 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFADVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PACLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVKYKVYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S +++ + LE + V AA G + A+ I+ D+ Sbjct: 171 QRFEFRKISVHDIVERLETVVTNEGTKVENEALQIVARAAEGGMRDALSIIDQAISYSDE 230 Query: 235 II-------------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 I+ Y+ + ++ + + +I D+++S+ + F+ +FI Sbjct: 231 IVTTEDVLAVTGSVSQQYLGNLVECIRDNDVSRALRIIDDMMSKGKDPV-RFMEDFIYYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + L + + +Y I H LSK ++ Sbjct: 290 RDMLLYQTSPQLEHMLERVI-VDDQFRMLSEAMRPEVIYE------IIHTLSKGQQ 338 >gi|15602229|ref|NP_245301.1| DNA polymerase III subunits gamma and tau [Pasteurella multocida subsp. multocida str. Pm70] gi|12720609|gb|AAK02448.1| DnaX [Pasteurella multocida subsp. multocida str. Pm70] Length = 714 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 139/330 (42%), Gaps = 34/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSDVVGQTHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTAEPCGEC------EHCKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 C+ +L + + + LE Q KI + + AA GS+ ++ + + Sbjct: 170 CMQFHLKALEQQQIAQHLEFILTQEKIPFEFLALEKLAKAAQGSIRDSLSLTDQAIAMSN 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQI----ADELLSQDQKIA-----FDFLIEFILKEI 282 + ++ +++ + + AL + + + ++ Q +A +D L+ I + + Sbjct: 230 GNITLNVVHEMLGLLDDDQALDIIHALQQGQGESVMKGVQAVAEKGGDWDELLRDIGENL 289 Query: 283 CKSAKAAAL-SGQLEEADQIAQIYFSLVKR 311 K A L S QL++ +I + + Sbjct: 290 HKIAMQQLLPSSQLDDTSRIGFLASHISPE 319 >gi|313668558|ref|YP_004048842.1| DNA polymerase III tau and gamma chains [Neisseria lactamica ST-640] gi|313006020|emb|CBN87479.1| DNA polymerase III tau and gamma chains [Neisseria lactamica 020-06] Length = 710 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +++ + + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVARHLSHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 233 DKIISS-YIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 K+ +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|167587030|ref|ZP_02379418.1| DNA polymerase III subunits gamma and tau [Burkholderia ubonensis Bu] Length = 371 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 76/350 (21%), Positives = 139/350 (39%), Gaps = 35/350 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + S L Sbjct: 230 NEVTETAVSGMLGALDQTY----MVRLLDALAAGDGTEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEE--ADQIA-----QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L Q A + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIAWAQFAPGSVLEEWPEAADLRRFAQTLSPEQVQLFYQIATVGR 335 >gi|104780939|ref|YP_607437.1| DNA polymerase III subunits gamma and tau [Pseudomonas entomophila L48] gi|95109926|emb|CAK14631.1| DNA polymerase III, tau and gamma subunits [Pseudomonas entomophila L48] Length = 684 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 126/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRDLAEQGPDWNGVLSEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|52783877|ref|YP_089706.1| DNA polymerase III subunits gamma and tau [Bacillus licheniformis ATCC 14580] gi|163119173|ref|YP_077305.2| DNA polymerase III subunits gamma and tau [Bacillus licheniformis ATCC 14580] gi|319648542|ref|ZP_08002757.1| DnaX protein [Bacillus sp. BT1B_CT2] gi|52346379|gb|AAU39013.1| DnaX [Bacillus licheniformis ATCC 14580] gi|145902676|gb|AAU21667.2| DNA polymerase III (gamma and tau subunits) [Bacillus licheniformis ATCC 14580] gi|317389390|gb|EFV70202.1| DnaX protein [Bacillus sp. BT1B_CT2] Length = 566 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 145/356 (40%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + ++ D + + + N VDEIR IR Sbjct: 66 RAPVSEPCNECSA------CKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F ++ + K +E ++ D D + AA G + A+ +L Sbjct: 171 QRFDFKRITSQAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGE 230 Query: 232 ----------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI--L 279 + YI + E + + +ELL Q + A + + I Sbjct: 231 ELTVDDALLITGAVSQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAK-LIEDMIFYF 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + +L +++ A +Y + +L+K+ + Sbjct: 290 RDMLLYQTAPDLEGVLEKV-KVDEEFQTLSRQIPASDLYEM------IDILNKSHQ 338 >gi|148266337|ref|YP_001233043.1| DNA polymerase III, subunits gamma and tau [Geobacter uraniireducens Rf4] gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4] Length = 579 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 132/349 (37%), Gaps = 41/349 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLIGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C P ++ D + + N VD+IR +R Sbjct: 65 EQGLTTEPCNTC------PSCTEITDGNSVDVFEIDGASNT---------GVDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRSRYKIFIIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F ++ + L +Q ++ D V GS+ ++ L D+++ Sbjct: 170 CQRFDFKRIALQKIVDRLRYIVDQEQVSVSDKALAVVARKGDGSMRDSLSTL----DQVL 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + + L + + + + + ++D + A + + + +E+ Sbjct: 226 AFCGQTVTDEDVAGLLGVVDRRLLLEASQSIFARDSRAALEIVKRVDSFGYNMRQFCQEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYF----SLVKRVHAFSMYNLDRRQMIF 327 + + + +A I + L + A +L R I Sbjct: 286 IDHFRNITILRTVVDAADILDLSEGEIAELKTQASATPPADLQRHLSIL 334 >gi|257469136|ref|ZP_05633230.1| DNA polymerase III subunits gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|317063383|ref|ZP_07927868.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|313689059|gb|EFS25894.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] Length = 484 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 39/354 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + + G ++I K L +G+ HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPKNFEEIAGQKEIVKTLKASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D + + + N +DEIR+++ Sbjct: 65 ENGITDEPCNKCEN------CLSINDGSFMDMIEIDAASNR---------GIDEIRQLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SR Sbjct: 110 KINYQPSKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS + + L E + D D + + GS+ A IL +I Sbjct: 170 CQRYDFKTLSPAEMKEKLGEISENEGVSVPDDVLDLIYENSGGSMRDATSILER---LMI 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + + I + + E L +KM+ D + + K L IE K+ Sbjct: 227 TCLDEEITLEKCEKVLGVTPVKKMKDFLDNVTEKKYKELVKMLDEFWSESLEIELFFKDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 K K +L E D+ +I ++ ++ F Y D+R + + +++ Sbjct: 287 AKYCKTLMSRSEL-EVDKGLKIIGAVYDSLNKFK-YEEDKRMVGYVVINNILST 338 >gi|256848136|ref|ZP_05553580.1| DNA polymerase III, subunits gamma and tau [Lactobacillus coleohominis 101-4-CHN] gi|256715196|gb|EEU30173.1| DNA polymerase III, subunits gamma and tau [Lactobacillus coleohominis 101-4-CHN] Length = 570 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 49/346 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + ++ HA LF G +G GK + +A + + Sbjct: 6 LYRVWRPQRFADVVGQQVITQTLKNAIITNQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + L+D + + + N V+EIR IR Sbjct: 66 HQKDGEPCNEC------EICQSITAGTLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTILSRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F+ +S + + L+Q K + + AA G + A+ IL D Sbjct: 171 QRFDFHRISPQDTFDRMKYILDQKKFKYEEKALWVIANAAEGGMRDALSILDQALSFGDD 230 Query: 233 D---------------KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 D K++ +Y + AL+ M QI + +D + + LI F Sbjct: 231 DVTLDDALLVTGSVTKKLLQTYFQQVATHEGPAALKTMDQILGQ--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAAL---SGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + L+EAD + L + +A +Y + Sbjct: 289 IRDLLLYQESPELIEIAATGLKEAD-----FQELSQLANAQQLYQM 329 >gi|220932911|ref|YP_002509819.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii H 168] gi|219994221|gb|ACL70824.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii H 168] Length = 588 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 132/302 (43%), Gaps = 30/302 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + L SGR+ HA LF G +G GK + +A + Sbjct: 6 LYRKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAMALNCI 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D + + + N +DEIR +R Sbjct: 66 HGPTTEPCGQCEN------CRKIQKGQSIDVIEIDAASNR---------GIDEIRELREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N G ++V +ID V + + A NALLK+LEEPP+KV+FIL + +++TI SRC Sbjct: 111 VKFYPNEGEYKVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ L + + L + ++ + + + +A G + AI +L D+ IS Sbjct: 171 QRFDFSLLPVREIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF----LIEFILKEICKSAKAAALSG 293 + ++ + L K+ + E+LSQ K + ++ + + I + L G Sbjct: 227 YTGNNLNPIDVQGMLGKVSR---EVLSQFIKYVLNGNSVEALKLVNRIISRGNNVGRLIG 283 Query: 294 QL 295 L Sbjct: 284 DL 285 >gi|298693807|gb|ADI97029.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED133] Length = 565 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|238917931|ref|YP_002931448.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873291|gb|ACR73001.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 561 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 143/363 (39%), Gaps = 44/363 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK ++ +A V Sbjct: 22 LYRKWRPDNFNDVKGQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAKAVNCE 81 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P K +A+ + + + + N VD IR+IR Sbjct: 82 HPVDGNPCGEC------PTCKAIAAGTSMNVIEIDAASNN---------GVDNIRQIREE 126 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 127 VQYSPTEGRFKVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRC 186 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F+ ++ + L +L + D +V AA GS+ A+ +L Sbjct: 187 QRYDFHRITIETIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYLG 246 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 D + +D++ ++ +LS D + + + I++ + Sbjct: 247 KDLKYENVLDVLGAVDTAVF----SKMLSTILSGDVAVCMSLMEDLIMQGRDLSQFVTDF 302 Query: 283 CKSAKAAALSGQLEEADQIAQIYF----SLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + L ++A++I + +L ++D +LS+ ND Sbjct: 303 IWYLRNLLLIKTTKDAERIEDVIEVSADNLEDLKKDAQNVDIDTLMYYIRVLSEL--SND 360 Query: 339 LYF 341 L F Sbjct: 361 LKF 363 >gi|71734194|ref|YP_274019.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554747|gb|AAZ33958.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] Length = 737 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|127513163|ref|YP_001094360.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica PV-4] gi|126638458|gb|ABO24101.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica PV-4] Length = 1113 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCAS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL SL+ + + L Q ++ D + AA GS+ A+ + + + Sbjct: 170 CLQFNLKSLTLDEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGA 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSA 286 ++ ++ ++ + + + ++ + D + K+ D L +L+ + + Sbjct: 230 GQVRLTQVQTMLGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q++Q + ++ Q+ + LL R+ Sbjct: 290 HQITLTQFAPSAAQLSQYAEQIKAFAKQLRP---EQVQLYYQLLLNGRQ 335 >gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus weihenstephanensis KBAB4] gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus weihenstephanensis KBAB4] Length = 562 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 47/357 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 IISS--------------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-- 278 ++S DL+ R E + + +I DE++S+ + F+ +FI Sbjct: 231 TVTSEDVLAVTGSVSQRYLGDLVECIR-ENDVSRALRIIDEMMSKGKDPV-RFMEDFIYY 288 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + +L + + +Y I H LSK ++ Sbjct: 289 YRDMLLYQTSPQLEHMLERVI-VDDQFRTLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|229591983|ref|YP_002874102.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens SBW25] gi|229363849|emb|CAY51308.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens SBW25] Length = 688 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 125/321 (38%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLSHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L + D FD L I + A A+ E Sbjct: 226 AFGEGKVMAADVRAMLGTL----------DHGQVFDVLHALIEGD--AKALLEAVRHLSE 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 + + ++ +H ++ Sbjct: 274 QGPDWNGVLSEILNVLHRVAI 294 >gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] Length = 562 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 47/357 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 IISS--------------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-- 278 ++S DL+ R E + + +I DE++S+ + F+ +FI Sbjct: 231 TVTSEDVLAVTGSVSQRYLGDLVECIR-ENDVSRALRIIDEMMSKGKDPV-RFMEDFIYY 288 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + +L + + +Y I H LSK ++ Sbjct: 289 YRDMLLYQTSPQLEHMLERVI-VDDQFRTLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|112944293|gb|ABI26342.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri] Length = 611 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + L+D + + + N V+EIR IR Sbjct: 66 HSKDGEPCNEC------EICKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y I AL M+ I DE +D + + LI F Sbjct: 231 EVKLDDALLVTGSVTKQLLKKYFLEISKHEGATALDTMKDILDE--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + +S + Q + + +V+ + +Y + Sbjct: 289 IRDILLYQESPSLISVESTGLKQ--EDFEEIVQLASSAPLYQM 329 >gi|254786716|ref|YP_003074145.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae T7901] gi|237683496|gb|ACR10760.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae T7901] Length = 672 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 132/320 (41%), Gaps = 41/320 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPANFREMVGQEHVLRALINALDHNRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P C ++A D + + + K V++ R + Sbjct: 65 DSGVTSTPCGECTS------CVEIAEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + LE+ I ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKNMSPERIVGHLQNVLEKEAIPSDNAALWSLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------------I 278 + + L Q +Q++ + L+ D + + EF + Sbjct: 226 AFGSGKVADSDVAAMLGTIDHQLIQRLIEALIESDGARLLNAVAEFAEHAPDFDAALSDL 285 Query: 279 LKEICKSAKAAALSGQLEEA 298 L + + A A AL L+ + Sbjct: 286 LTMLHRIAIAQALPEALDNS 305 >gi|257484501|ref|ZP_05638542.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013236|gb|EGH93292.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 737 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|302332191|gb|ADL22384.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus JKD6159] Length = 565 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALNHLFDDIVQGDVQASFKKYHQFI 272 >gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] Length = 559 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 132/307 (42%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P L G E + L SGR+ A LF G +G GK + G A V Sbjct: 5 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 64 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C P + + D + + + N VD+IR ++ Sbjct: 65 TTNQGKGEPCNTC------PMCLSITEGSSMDVIEIDAASNT---------GVDDIRELK 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI S Sbjct: 110 EKVQYAPALANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ +S +++ + LE++ I + +A GS +L +I Sbjct: 170 RCQRFDFHRVSLSDMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQ----QI 225 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 ++Y I +P+ + AL ++++ +A+ +L +D K L + I Sbjct: 226 ATTYGTEISLPQVQAALGISGDERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRE 285 Query: 291 LSGQLEE 297 L L + Sbjct: 286 LLDYLRQ 292 >gi|330879129|gb|EGH13278.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 739 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|289649552|ref|ZP_06480895.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 2250] Length = 741 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMATDVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|227545161|ref|ZP_03975210.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300909166|ref|ZP_07126627.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri SD2112] gi|227184893|gb|EEI64964.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300893031|gb|EFK86390.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri SD2112] Length = 611 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 134/343 (39%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + L+D + + + N V+EIR IR Sbjct: 66 HSKDGEPCNEC------EICKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y I AL M+ I DE +D + + LI F Sbjct: 231 EVKLDDALLVTGSVTKQLLKKYFLEISKHEGATALDTMKDILDE--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + +S + Q + + +V+ + ++Y + Sbjct: 289 IRDILLYQESPSLISVESTGLKQ--EDFEEIVQLASSATLYQM 329 >gi|289551726|ref|YP_003472630.1| DNA polymerase III subunits gamma and tau [Staphylococcus lugdunensis HKU09-01] gi|315660106|ref|ZP_07912964.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus lugdunensis M23590] gi|289181257|gb|ADC88502.1| DNA polymerase III subunits gamma and tau [Staphylococcus lugdunensis HKU09-01] gi|315495007|gb|EFU83344.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus lugdunensis M23590] Length = 576 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 23/269 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + + L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + D + + + N VDEIR IR Sbjct: 66 NSNDGEPCNEC------AICKGITTGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +++ + + L ++ +I + +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAINSEQIVERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQD 266 D + + + + A L +D Sbjct: 227 FGDDHLTLKDALDVTGSVDEAALNDLFKD 255 >gi|304380492|ref|ZP_07363170.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341010|gb|EFM06932.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 555 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|298486349|ref|ZP_07004411.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159077|gb|EFI00136.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 737 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|258424489|ref|ZP_05687366.1| DNA polymerase III [Staphylococcus aureus A9635] gi|257845084|gb|EEV69121.1| DNA polymerase III [Staphylococcus aureus A9635] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I + F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALNHLFDDIVQGDVQASFKKYHQFI 272 >gi|81427950|ref|YP_394949.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609591|emb|CAI54637.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus sakei subsp. sakei 23K] Length = 571 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 150/359 (41%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + + HA LF G +G GK + +A + + Sbjct: 6 LYRVWRPQRFDDVVGQETMTQTLKNAIITKQTSHAYLFTGPRGTGKTSAAKIFAKAINCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + AL+D + + + N V+EIR IR Sbjct: 66 YQKDGEPCNEC------ETCRAITAGALNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 AKYAPTQADYKIYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEVHKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F ++ +L+K LEQ ++ + + AA G + A+ IL Sbjct: 171 QRFNFKRITAADLFKRMAYILEQKEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSDN 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + +++ Y+ IH + ALQ +QQI E +D + + LIE+ Sbjct: 231 HVTLENALDVTGSLTEALLADYVQTIHDHAPKAALQLLQQILAE--GKDAQRFVEDLIEY 288 Query: 278 ILKEIC-KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + + A ++ +++ D + + L + A +Y + +L++ ++ Sbjct: 289 VRDLLMYQQAPELVMANEMDLLD---EHFKQLSDALSAEQLY------TVIDILNETQQ 338 >gi|42525061|ref|NP_970441.1| DNA polymerase III gamma and tau subunits [Bdellovibrio bacteriovorus HD100] gi|39577272|emb|CAE81095.1| DNA polymerase III gamma and tau subunits [Bdellovibrio bacteriovorus HD100] Length = 621 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 140/342 (40%), Gaps = 37/342 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G I + LS +GR+ HALLF G +G GK + A + Sbjct: 21 VIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRC 80 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A + D + + + N VD IR +R Sbjct: 81 PNAQNFVPCNDCYS------CNEIAGGSSIDVIEIDGASNN---------GVDAIRELRD 125 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++G +++ +ID V ++ +A NALLK+LEEPP V+FI+ + I TI SR Sbjct: 126 TVAFMPSSGKYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSR 185 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F +S ++ + L ++ + D V GS+ + +L + Sbjct: 186 CQRFDFRRISTRSITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFAN 245 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIAF---------DFLIEFI 278 +S ++++ + + + + + D +L +KIA L+E I Sbjct: 246 GPLTRASVVEILGLTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMI 305 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + A S LE D Q + +R+ ++ L Sbjct: 306 RNLLLIKVSEAQASQILEMPDSELQALSEMAQRLPEEDIHML 347 >gi|283469770|emb|CAQ48981.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus ST398] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|57651359|ref|YP_185408.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus COL] gi|151220654|ref|YP_001331476.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|221142547|ref|ZP_03567040.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452484|ref|ZP_05700492.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948] gi|262049732|ref|ZP_06022598.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus D30] gi|262051991|ref|ZP_06024203.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus 930918-3] gi|282924528|ref|ZP_06332198.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765] gi|284023487|ref|ZP_06377885.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus 132] gi|57285545|gb|AAW37639.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus COL] gi|150373454|dbj|BAF66714.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|257859884|gb|EEV82724.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948] gi|259160120|gb|EEW45152.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus 930918-3] gi|259162194|gb|EEW46770.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus D30] gi|269940049|emb|CBI48425.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus TW20] gi|282592837|gb|EFB97842.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765] gi|302750368|gb|ADL64545.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315196724|gb|EFU27070.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus CGS01] gi|329313196|gb|AEB87609.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp. aureus T0131] gi|329725115|gb|EGG61608.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21189] gi|329730706|gb|EGG67087.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21193] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|49482703|ref|YP_039927.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257424588|ref|ZP_05601017.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427254|ref|ZP_05603656.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322] gi|257429890|ref|ZP_05606277.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257432593|ref|ZP_05608956.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410] gi|257435498|ref|ZP_05611549.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|282903061|ref|ZP_06310954.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus C160] gi|282907450|ref|ZP_06315298.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282907798|ref|ZP_06315638.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912683|ref|ZP_06320479.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WBG10049] gi|282913303|ref|ZP_06321095.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M899] gi|282918257|ref|ZP_06325998.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C427] gi|282922931|ref|ZP_06330621.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C101] gi|283959906|ref|ZP_06377347.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97] gi|293498350|ref|ZP_06666204.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus 58-424] gi|293509291|ref|ZP_06668008.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809] gi|293550558|ref|ZP_06673230.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M1015] gi|295427009|ref|ZP_06819648.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus EMRSA16] gi|297588779|ref|ZP_06947420.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus MN8] gi|49240832|emb|CAG39499.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257273606|gb|EEV05708.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053] gi|257276885|gb|EEV08336.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322] gi|257280371|gb|EEV10958.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257283472|gb|EEV13604.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410] gi|257286094|gb|EEV16210.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|282315152|gb|EFB45538.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C101] gi|282317954|gb|EFB48322.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus C427] gi|282323403|gb|EFB53722.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M899] gi|282324379|gb|EFB54695.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WBG10049] gi|282328362|gb|EFB58635.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330349|gb|EFB59870.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282597520|gb|EFC02479.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus C160] gi|283789498|gb|EFC28325.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97] gi|290919605|gb|EFD96681.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus M1015] gi|291097281|gb|EFE27539.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus 58-424] gi|291467930|gb|EFF10439.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809] gi|295129461|gb|EFG59088.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577290|gb|EFH96003.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus MN8] gi|312436435|gb|ADQ75506.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH60] gi|315193216|gb|EFU23615.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] Length = 586 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLSTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 66 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 287 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANTC-DLNYR 343 >gi|329120112|ref|ZP_08248782.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis ATCC BAA-1200] gi|327463643|gb|EGF09961.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis ATCC BAA-1200] Length = 771 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 28/291 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C P Q+ + D L + + N +D IR + Sbjct: 65 ENPAHGEPCGRC------PACTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ LE I + + AA GS+ A+ +L D+ I Sbjct: 170 CLQFVLRNMTAQQAAAHLEHVLTAEGIPFEKTALQLLARAANGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 + + + + + + + L +Q+ + E + + Sbjct: 226 AMGGGSVAEADVRHMIGAVDKRYLYELITALSAQNGEKLLQKAQEMAERAV 276 >gi|323488472|ref|ZP_08093718.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis MPA1U2] gi|323397864|gb|EGA90664.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis MPA1U2] Length = 577 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 76/357 (21%), Positives = 142/357 (39%), Gaps = 51/357 (14%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + G +++ L + HA LF G +G GK + +A + Sbjct: 8 RVYRPQSFSEMTGQTHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKALNCEQA 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C + + + D + + N V+E+R I + Sbjct: 68 PTAEPCNECTS------CRSINEGSNTDVIEFDAASNS---------RVEEMREIIEKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 + +++ +ID V ++ +A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 113 FSPANSRFKIYIIDEVHMLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQR 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F S ++ ++ + ++ KI + + AA G + A+ +L D+++S Sbjct: 173 FDFKSHTQVDIVSRMVEVLTDAKIPYNEQVLKIIAQAAAGGMRDALSLL----DQVVSFS 228 Query: 240 IDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI---------------- 278 D + + + Q IA+ LL++D A L + + Sbjct: 229 GDEMTVEDALLVTGSVSQDVFYGIAEALLAKDIGQALTLLEQLVRDGKDPVRLVEDFITF 288 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L LE A + + L R + ++YN +LSK ++ Sbjct: 289 FRDLLLIQTAPDLHDMLELAAHEPR-FEELANRFESTTLYN------WLDILSKTQQ 338 >gi|301300447|ref|ZP_07206647.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851944|gb|EFK79628.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius ACS-116-V-Col5a] Length = 579 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 139/352 (39%), Gaps = 49/352 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + K L + + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCR 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 66 FSKEGEPCNEC------ETCKAITEGCLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ + L+Q + D + AA G + A+ +L Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + +Y+ + AL+++QQI ++ +D + LI + Sbjct: 231 NVTLDNALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQ--GKDANRLIEDLINY 288 Query: 278 ILKEIC-KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY----NLDRRQ 324 + + A G+L D + L ++++ +Y L+++Q Sbjct: 289 CRDLLLYQQAPEMVSDGELGLLD---DKFKELSQQINVTQIYQIIDELNKQQ 337 >gi|167581686|ref|ZP_02374560.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis TXDOH] Length = 384 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|289626398|ref|ZP_06459352.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866322|gb|EGH01031.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 741 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|240125776|ref|ZP_04738662.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae SK-92-679] gi|268684373|ref|ZP_06151235.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-92-679] gi|268624657|gb|EEZ57057.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-92-679] Length = 707 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] Length = 480 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 42/304 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G ++ +G + HA +F G +G GK T+ A + Sbjct: 4 LYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLNCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P CN + + + + D L + + N +DEIR+IR Sbjct: 64 NKNGVEPCNKCNT------CQSIDNGSFMDVLEIDAASNR---------GIDEIRKIRET 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A G ++V +ID V + + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 109 VGYHAAQGNYKVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRC 168 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----- 232 I F +L+ ++ K LE + I + + A G + A+ IL Sbjct: 169 QVIDFKNLTIEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSK 228 Query: 233 ---------------DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF-DFLIE 276 ++I+ ID I I + + ++++ +D ++ L E Sbjct: 229 DITIEDVRETLGLVPIEVINEMIDSIKIGDIKKTTEIIEKVY--FSGKDPEVFLMQLLEE 286 Query: 277 FILK 280 ILK Sbjct: 287 MILK 290 >gi|325522361|gb|EGD00963.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. TJI49] Length = 381 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAETLSPEQVQLFYQIATVGR 335 >gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] Length = 562 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 47/357 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 IISS--------------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-- 278 ++S DL+ R E + + +I DE++S+ + F+ +FI Sbjct: 231 TVTSEDVLAVTGSVSQRYLGDLVECIR-ENDVSRALRIIDEMMSKGKDPV-RFMEDFIYY 288 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + +L + + +Y I H LSK ++ Sbjct: 289 YRDMLLYQTSPQLEHMLERVI-VDDQFRTLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|120598523|ref|YP_963097.1| DNA polymerase III subunits gamma and tau [Shewanella sp. W3-18-1] gi|120558616|gb|ABM24543.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. W3-18-1] Length = 984 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 133/321 (41%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L + ++ + AA GS+ A+ + D+ I Sbjct: 197 CLQFNLKSLTQDEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSL----TDQAI 252 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + Q+ L S D++ L +I + + L Sbjct: 253 AFGGGTVMLT----------QVQTMLGSIDEQHVIALLKALTDADI--TVLMQTSAQVLA 300 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 ++ SL++ +H ++ Sbjct: 301 YGADAQEVLRSLLELLHQITL 321 >gi|82750185|ref|YP_415926.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus RF122] gi|82655716|emb|CAI80115.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus RF122] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 117/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSADGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D+ F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDAALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|319637641|ref|ZP_07992407.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102] gi|317400796|gb|EFV81451.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102] Length = 667 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C Q+ S D L + + N +D IR + Sbjct: 65 ENAVHGEPCGQCES------CTQIDSGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +++ + + L + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 233 DKIISS-YIDLIHIPRQEYALQKMQQIA----DELLSQDQK-----IAFDFLIEFILKEI 282 K+ +I ++Y + ++ I + LL + Q+ I FD + + + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A + L D + L + + Sbjct: 290 QRLALIQTIPSALANDDPERETLLRLSQAL 319 >gi|294850658|ref|ZP_06791381.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754] gi|294822495|gb|EFG38941.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754] Length = 565 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|319426701|gb|ADV54775.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens 200] Length = 984 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 132/321 (41%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L + ++ + AA GS+ A+ + D+ I Sbjct: 197 CLQFNLKSLTQDEIGTQLNHILTQEQLPFEIEALTLLAKAANGSMRDALSL----TDQAI 252 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + Q+ L S D++ L +I + L Sbjct: 253 AFGGGTVMLT----------QVQTMLGSIDEQHVIALLKALTDADI--KVLMQTSAQVLA 300 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 ++ SL++ +H ++ Sbjct: 301 YGADAQEVLRSLLELLHQITL 321 >gi|254670263|emb|CBA05524.1| DNA polymerase III subunit Tau [Neisseria meningitidis alpha153] Length = 735 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPNALAHDDPDSDILHRLAQTI 348 >gi|330986180|gb|EGH84283.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M301315] Length = 733 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|310779061|ref|YP_003967394.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] gi|309748384|gb|ADO83046.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] Length = 486 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 145/354 (40%), Gaps = 45/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G EDI K + RM HA LF G +G+GK T A + Sbjct: 5 LYRKYRPSNFNEVAGEEDIIKTIKNSLRENRMAHAYLFAGPRGVGKTTTARLIAKGLNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + N +DEIR+++ Sbjct: 65 TNGITDDPCDICDN------CLAVNEGNFVDMIEIDAASNR---------GIDEIRQLKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP VLFIL + IL TI SR Sbjct: 110 KINYRPARGRKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVLFILATTEPDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S + L ++ I D + A GS+ AI I +K+I Sbjct: 170 CQRYDFKPISFESTRDRLLEIGKSEGIEVDDESLLLIYEKAGGSMRDAISIF----EKLI 225 Query: 237 SS-YIDLIHIPRQEYALQKM--------QQIADELLSQDQKIAFDFL------IEFILKE 281 SS Y + I I + + L + QIA E S D L IE ++ Sbjct: 226 SSCYGESITIEKSQKVLGVIPEKQLMEFLQIAREGDSYKGVKFLDKLWNGSVNIESFFRD 285 Query: 282 ICKSAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + K +K L +L EE I + ++ + Y D+R + + +L K Sbjct: 286 LAKLSKELMLKDELTPEEGMPIIGAIYDVITKFK----YEEDKRLLGYVILHKL 335 >gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] Length = 562 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 47/357 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L + HA LF G +G GK T+ +A + Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + ++ D L + + N VDEIR IR Sbjct: 66 HAPVAEPCNEC------PSCLGITQGSISDVLEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPSAVGYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 +F +S N++ + L D V AA G + A+ ++ D+ Sbjct: 171 QRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE 230 Query: 235 IISS--------------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-- 278 ++S DL+ R E + + +I DE++S+ + F+ +FI Sbjct: 231 TVTSEDVLAVTGSVSQRYLGDLVECIR-ENDVSRALRIIDEMMSKGKDPV-RFMEDFIYY 288 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ + L LE + + +L + + +Y I H LSK ++ Sbjct: 289 YRDMLLYQTSPQLEHMLERVI-VDDQFRTLSEEMQPEVIYE------IIHTLSKGQQ 338 >gi|257790371|ref|YP_003180977.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM 2243] gi|257474268|gb|ACV54588.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM 2243] Length = 735 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 135/351 (38%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 5 LYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C+ +A+ D L + V+ +R I Sbjct: 65 CGPTPEPDGTCD------DCVMIANGEHPDVYELDAASRT---------GVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SR Sbjct: 110 RVQFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S ++ L + + D + A G + A+ L +++I Sbjct: 170 CQRFDFRRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSL----EQLI 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEFILK--EICKSAKAA 289 + + + E L + +I + ++D F + E++ ++ + + Sbjct: 226 AFGEGKVTMEVAERLLGSIDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDL 285 Query: 290 ALS------GQLEEADQIAQIYFSLVKRVH-AFSMYNLDRRQMIFHLLSKA 333 A L AD ++ ++ + + ++ DR + +L Sbjct: 286 AEHMRNMYVLSLAGADVALEVSETVRRELASELPLFGPDRLARLLGVLGDL 336 >gi|146282183|ref|YP_001172336.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri A1501] gi|145570388|gb|ABP79494.1| DNA polymerase subunits gamma and tau [Pseudomonas stutzeri A1501] Length = 687 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 125/321 (38%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 20 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 79 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 80 ETGVSSTPCGQC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 125 NVQYAPSRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + + + AA GS+ A+ + D+ I Sbjct: 185 CLQFSLKNMPPERVVEHLTHVLGVENVPFEEDALWLLGRAADGSMRDAMSL----TDQAI 240 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + ++ + L L+E + + ++ + A G Sbjct: 241 AF-------GEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQG--- 290 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 A + ++ +H ++ Sbjct: 291 --PDWAGVLAEMLNVLHRVAI 309 >gi|15923468|ref|NP_371002.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50] gi|15926155|ref|NP_373688.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus N315] gi|148266936|ref|YP_001245879.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH9] gi|150392982|ref|YP_001315657.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH1] gi|156978806|ref|YP_001441065.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu3] gi|253315726|ref|ZP_04838939.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005271|ref|ZP_05143872.2| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795401|ref|ZP_05644380.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus A9781] gi|258421451|ref|ZP_05684378.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719] gi|258436850|ref|ZP_05689190.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299] gi|258445643|ref|ZP_05693823.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300] gi|258456009|ref|ZP_05703964.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937] gi|282927511|ref|ZP_06335129.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102] gi|295405726|ref|ZP_06815536.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819] gi|296276913|ref|ZP_06859420.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MR1] gi|297245635|ref|ZP_06929503.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796] gi|13700368|dbj|BAB41666.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus N315] gi|14246246|dbj|BAB56640.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu50] gi|147740005|gb|ABQ48303.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945434|gb|ABR51370.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus JH1] gi|156720941|dbj|BAF77358.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus Mu3] gi|257789373|gb|EEV27713.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus A9781] gi|257842875|gb|EEV67297.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719] gi|257848641|gb|EEV72628.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299] gi|257855593|gb|EEV78528.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300] gi|257862221|gb|EEV84994.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937] gi|282590835|gb|EFB95911.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102] gi|285816177|gb|ADC36664.1| DNA polymerase III subunits gamma and Tau [Staphylococcus aureus 04-02981] gi|294969801|gb|EFG45820.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819] gi|297177621|gb|EFH36872.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796] gi|312828973|emb|CBX33815.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130108|gb|EFT86097.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus CGS03] gi|329725750|gb|EGG62229.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus 21172] Length = 565 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|224475611|ref|YP_002633217.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus subsp. carnosus TM300] gi|222420218|emb|CAL27032.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus subsp. carnosus TM300] Length = 583 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + D + + + N VDEIR IR Sbjct: 66 NSVDGEPCNECD------ICKSITQGSNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSQSKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + + L E I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAIGLDQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + + +++ + K AF +FI + Sbjct: 227 FGDEHLTLQDALNVTGSVDEASLNALLNDVANGQVKDAFARYHQFIAE 274 >gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4] gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4] Length = 602 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 144/354 (40%), Gaps = 38/354 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-----KEICKSAKA 288 K+ Y D + I A +K++Q+ +LL AF+ + + K I + Sbjct: 231 KV--KYEDALKITGYA-AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELIS 287 Query: 289 AALSGQL-----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + G L +EA + + Y + + ++ YNL Q L+ R N Sbjct: 288 LTVKGMLVVKSNKEATFLTKDYATELAKIPEEKFYNL--VQAANTALNDLRYTN 339 >gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC 4571] gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC 4571] Length = 595 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 22/278 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+++L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF 273 +Y D + I A + +++I LL Q+ + A Sbjct: 231 RVNYQDALEITGFA-AKENIEKILLALLEQNPESALKL 267 >gi|297209025|ref|ZP_06925425.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886296|gb|EFH25229.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 565 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S N + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|269202097|ref|YP_003281366.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED98] gi|262074387|gb|ACY10360.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus ED98] Length = 565 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKMFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|330963243|gb|EGH63503.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. actinidiae str. M302091] Length = 741 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|312962441|ref|ZP_07776932.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] gi|311283368|gb|EFQ61958.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] Length = 684 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 125/321 (38%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L + D FD L I + A A+ E Sbjct: 226 AFGEGKVMAADVRAMLGTL----------DHGQVFDVLHALIEGD--AKALLEAVRHLSE 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 + + ++ +H ++ Sbjct: 274 QGPDWNGVLSEILNVLHRVAI 294 >gi|56460949|ref|YP_156230.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] gi|56179959|gb|AAV82681.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] Length = 681 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 132/335 (39%), Gaps = 37/335 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLHHAYLFTGTRGVGKTTIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ D L + + K V++ R + Sbjct: 65 EEGITATPCGKCSA------CLEIEQGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYRPTRGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS +++ + L Q ++ + +A GS+ A+ + D+ I Sbjct: 170 CLQFNLKALSNDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + ID + + + + + +L D + + + +L E+ Sbjct: 226 AQGGGSVSIDSVRRMLGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 AL Q+ A + + L + Sbjct: 286 QSLLHQLALVQQVPSAANVFENSDVLKPLLRRMPA 320 >gi|254252241|ref|ZP_04945559.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894850|gb|EAY68730.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 472 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 136/348 (39%), Gaps = 37/348 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLS 331 + L AQ + + ++ Q+ + + + Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFADTLSPEQVQLFYQIAT 332 >gi|154684538|ref|YP_001419699.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens FZB42] gi|154350389|gb|ABS72468.1| DnaX [Bacillus amyloliquefaciens FZB42] Length = 563 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 148/356 (41%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQQFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVEEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ + ++ + ++ + D + AA G + A+ +L Sbjct: 171 QRFDFKRITSKAIVGRMKTIVDAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFSGE 230 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFI--L 279 D +I+ + +I + AL + + +ELL Q + A + + I Sbjct: 231 ELSVDDALLITGAVSQHYIGKLASALHRKQVSEALETLNELLQQGKDAAK-LIEDMIFYF 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L G LE+ ++ + + +L + A ++Y + +L+K+ + Sbjct: 290 RDMLLYQAAPGLEGVLEKV-KVDETFRNLSGDIPAPALYEM------IDILNKSHQ 338 >gi|253580411|ref|ZP_04857676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848141|gb|EES76106.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 539 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 136/325 (41%), Gaps = 43/325 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L+ R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDNFADVKGQDHIVTTLTNQIKHNRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K + + + + + + N VD IR IR Sbjct: 66 HPVNGSPCNEC------AMCKAIQAGTAMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VSYRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + + L++L + + +V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRITIDTIAARLDELLKVEGVEAEEKAVRYVAKAGDGSMRDALSLL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Y+ QE K+ ++ + ++ + ++ + ++G + Sbjct: 227 FYL------GQELTYDKVLEVLGAVDTE------------VFSKLLRKVIRGDVTGSIHI 268 Query: 298 ADQIAQIYFSLVKRVHAFSMY--NL 320 +++ L + V F+ Y NL Sbjct: 269 LEELIVGGRELSQFVGDFTWYMRNL 293 >gi|258413427|ref|ZP_05681702.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus A9763] gi|257839674|gb|EEV64143.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus A9763] Length = 565 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|154248975|ref|YP_001409800.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium nodosum Rt17-B1] gi|154152911|gb|ABS60143.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium nodosum Rt17-B1] Length = 517 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 149/350 (42%), Gaps = 39/350 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I+K L+ +++HA +F G +G GK T A + Sbjct: 4 LYRKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + + D + L + N +DEIR+I+ Sbjct: 64 KNQFGEPCNECTS------CQAIDNGSHLDVIELDAASNR---------GIDEIRKIKEG 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ T G ++V +ID V + R A NALLK+LEEPPQ ++FIL + I TI SRC Sbjct: 109 VNFTPVMGKYKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 ++F ++SE N+ L E+ + A G + A+ L Sbjct: 169 HVLEFRNISEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGG 228 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-FILKEICKSAKA 288 +KI+ + LI + +++ + L+ D+++ L + +I + + Sbjct: 229 EVTEKIVDEALGLISE-------ETIEKFIEATLNNDRELIEKILNDIYIERGDFDTFIN 281 Query: 289 AALSGQLEEAD----QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + LE+ + ++A +++++K + L R M + ++ Sbjct: 282 QLIEKTLEKKEDNMLKLASDFYNVLKEIRFAEEKLLIARLMFLSIANRYH 331 >gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] Length = 586 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 40/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C F +Q + + L + N +VD+IR + Sbjct: 66 LNPTADGEACNAC--ESCRAFNEQRSYNIH----ELDAASNN---------SVDDIRTLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V + A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + L+ Q + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + + L E + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAILSGNVRASLLILNEILGKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQ----IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 L+G + D+ + ++ S+ +R + + D Q++F + A C DL +R Sbjct: 287 LAGHFRDLLVCRDESTLVLFEVGASIRERYKEMAKHCPD--QLLFKAIELANAC-DLNYR 343 >gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] Length = 595 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 77/304 (25%), Positives = 120/304 (39%), Gaps = 37/304 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH-------- 229 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 230 ----YDCDKIISSY----IDLIHIPRQEYALQKMQQIADELLSQDQ--KIAFDFLIEFIL 279 D +I I+ I + E + ++A L+Q K D LI+ Sbjct: 231 SVNYQDALEITGFAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMAT 290 Query: 280 KEIC 283 K + Sbjct: 291 KSLM 294 >gi|239999003|ref|ZP_04718927.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae 35/02] gi|240014087|ref|ZP_04721000.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae DGI18] gi|240016521|ref|ZP_04723061.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA6140] gi|240080645|ref|ZP_04725188.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA19] gi|240115744|ref|ZP_04729806.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID18] gi|240121648|ref|ZP_04734610.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID24-1] gi|268594851|ref|ZP_06129018.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02] gi|268596769|ref|ZP_06130936.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19] gi|268601422|ref|ZP_06135589.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID18] gi|293399027|ref|ZP_06643192.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62] gi|268548240|gb|EEZ43658.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02] gi|268550557|gb|EEZ45576.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19] gi|268585553|gb|EEZ50229.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID18] gi|291610441|gb|EFF39551.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62] Length = 707 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|260589048|ref|ZP_05854961.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM 20583] gi|260540827|gb|EEX21396.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM 20583] Length = 538 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + + + + + N VD IR IR Sbjct: 66 HPVDGSPCNTC------KTCRAINEGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ TG ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYRPTTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + L++L + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFRRITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----------- 280 Y+ + + Q ++ ++L QD L E I++ Sbjct: 227 FYLGEKLTYEKVLENLGAVDTQVFSRMLRQILQQDTAGTIKTLDEIIIQGRELGQFVTDF 286 Query: 281 -EICKSAKAAALSGQLEEA-DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 ++ + S EEA D A+ + + L R IF LS Sbjct: 287 IWYLRNLLLISTSEHPEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELS 339 >gi|240128297|ref|ZP_04740958.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae SK-93-1035] gi|268686694|ref|ZP_06153556.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626978|gb|EEZ59378.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae SK-93-1035] Length = 707 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|254493794|ref|ZP_05106965.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae 1291] gi|226512834|gb|EEH62179.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae 1291] Length = 707 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|238563644|ref|ZP_00438506.2| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8 horse 4] gi|238520253|gb|EEP83715.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8 horse 4] Length = 449 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|90962203|ref|YP_536119.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius UCC118] gi|90821397|gb|ABE00036.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius UCC118] Length = 579 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 139/352 (39%), Gaps = 49/352 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + K L + + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCR 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 66 FSKEGEPCNEC------ETCKAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ + L+Q + D + AA G + A+ +L Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + +Y+ + AL+++QQI ++ +D + LI + Sbjct: 231 NVTLDNALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQ--GKDANRLIEDLINY 288 Query: 278 ILKEIC-KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY----NLDRRQ 324 + + A G+L D + L ++++ +Y L+++Q Sbjct: 289 CRDLLLYQQAPEMVSDGELGLLD---DKFKELSQQINVTQLYQIIDELNKQQ 337 >gi|330808463|ref|YP_004352925.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376571|gb|AEA67921.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 691 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 125/321 (38%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGEC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L + D +D L I + A A+ E Sbjct: 226 AFGEGKVMAADVRAMLGTL----------DHGQVYDVLHALIEGD--AKALLEAVRHLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 + + ++ +H ++ Sbjct: 274 QGPDWNGVLSEILNVLHRVAI 294 >gi|262171934|ref|ZP_06039612.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451] gi|261893010|gb|EEY38996.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451] Length = 697 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + L+ +I + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIADE---------LLSQDQKIAFDFLIEFILKEIC 283 ++ S I ++ ++AL +Q I+ + + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISQQTPQAVMECIDTLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLAKVL 319 >gi|206895302|ref|YP_002246820.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter proteolyticus DSM 5265] gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter proteolyticus DSM 5265] Length = 522 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 124/314 (39%), Gaps = 33/314 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L++ + ++ HA LF G +G GK + +A + Sbjct: 3 LYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + D + + + N VDEIR +R Sbjct: 63 TGITSKPCNECES------CKLINEGHSLDVIEIDAASNR---------GVDEIRELRER 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + R A NALLK+LEEPP+ V+FIL + I T+ SRC Sbjct: 108 VKYRPAQSRYKVYIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRC 167 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F L+ + +++ LE + + + G+V A+ +L ++I Sbjct: 168 QRFRFKKLTSDEVFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLL----EQISV 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I + L + + ++ D L + A L E Sbjct: 224 VDEGKVSIKTARFLLNVV----------EDEVILDLLKTAFADMDEAVERLAELMESGVE 273 Query: 298 ADQIAQIYFSLVKR 311 ++ + SLV+R Sbjct: 274 PMELFRTMKSLVRR 287 >gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus MTCC 5463] Length = 595 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 22/278 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S+++L K L+Q I D + A G + A+ IL +K Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF 273 +Y D + I A + +++I LL Q+ + A Sbjct: 231 RVNYQDALEITGFA-AKENIEKILLALLEQNPESALKL 267 >gi|320323485|gb|EFW79570.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. B076] gi|320329472|gb|EFW85464.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. race 4] Length = 737 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYVPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|258444431|ref|ZP_05692765.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115] gi|282893617|ref|ZP_06301850.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117] gi|257850690|gb|EEV74638.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115] gi|282764303|gb|EFC04430.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117] Length = 565 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSADGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|308171911|ref|YP_003918616.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens DSM 7] gi|307604775|emb|CBI41146.1| DNA polymerase III (gamma and tau subunits) [Bacillus amyloliquefaciens DSM 7] gi|328551720|gb|AEB22212.1| DNA polymerase III subunits gamma and tau [Bacillus amyloliquefaciens TA208] Length = 563 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 145/358 (40%), Gaps = 49/358 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I K L + HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQQFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + ++ D + + + N VDEIR IR Sbjct: 66 HAPVEEPCNEC------AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 F ++ + ++ + ++ + D + AA G + A+ +L D Sbjct: 171 QRFDFKRITSQAIVGRMKIIVDAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFSGD 230 Query: 234 KI----------------ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 ++ I +H + AL+ + ++ + +D + +I + Sbjct: 231 ELAVDDALLITGAVSQHYIGKLASALHRKQVSEALETLNELLQQ--GKDAAKLIEDMIFY 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A A L G LE+ ++ +++ L + A ++Y + +L+K+ + Sbjct: 289 FRDMLLYQA-APDLEGVLEKV-KVDEMFRDLSGEIPAPALYEM------IDILNKSHQ 338 >gi|325294717|ref|YP_004281231.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium thermolithotrophum DSM 11699] Length = 463 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 31/338 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R + P + G E I L +GR HA +F G +G+GK T A + Sbjct: 6 IPRKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAYVFAGPRGVGKTTTARIVAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + ++ + D + + + N +D+IR +R Sbjct: 66 SLIDGEPCNECSN------CQAISKGSFPDVIEIDAATNR---------GIDQIRELRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G +V +ID + + A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VNYAPVKGKKKVYIIDEFHMLTKEAFNALLKTLEEPPEHVVFILATTEIDKIPPTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + + L E+ + + + A+ G + A +L D+ I+ Sbjct: 171 QKFVFRRIPKDLMVETLKRICEKEDVSYEEEALYLIATASEGCMRDAESLL----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L+ + + L ++ +E+ + K G Sbjct: 227 LGNGLVKTSY-------ISEFLGVLTGKEIFEILSLSFSGKKRELREKLKRLESQGYNPL 279 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + Q+ + + ++ + F +LS A + Sbjct: 280 FI-VKQLLEKVEREFIEGKNFSEEELLAAFKILSDAHK 316 >gi|27469225|ref|NP_765862.1| DNA polymerase III gamma and tau subunits [Staphylococcus epidermidis ATCC 12228] gi|57866110|ref|YP_187710.1| DNA polymerase III, gamma and tau subunits [Staphylococcus epidermidis RP62A] gi|251811247|ref|ZP_04825720.1| DNA-directed DNA polymerase [Staphylococcus epidermidis BCM-HMP0060] gi|282874603|ref|ZP_06283485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis SK135] gi|293367695|ref|ZP_06614347.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus epidermidis M23864:W2(grey)] gi|27316774|gb|AAO05949.1|AE016751_244 DNA polymerase III gamma and tau subunits [Staphylococcus epidermidis ATCC 12228] gi|57636768|gb|AAW53556.1| DNA polymerase III, gamma and tau subunits [Staphylococcus epidermidis RP62A] gi|251805208|gb|EES57865.1| DNA-directed DNA polymerase [Staphylococcus epidermidis BCM-HMP0060] gi|281296527|gb|EFA89039.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis SK135] gi|291318265|gb|EFE58659.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus epidermidis M23864:W2(grey)] Length = 568 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + ++ ++++ D K AF+ FI + Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|304312973|ref|YP_003812571.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium HdN1] gi|301798706|emb|CBL46939.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium HdN1] Length = 669 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 131/323 (40%), Gaps = 37/323 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFSEMVGQEHVLRAMINALDQQRLHHAYLFTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EKGVTSQPCGTCSA------CREIDEGRFVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYTPTRGRYKVYLIDEVHMLSGHSFNALLKTLEEPPEHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L++ ++ + + A GS+ A+ + D+ I Sbjct: 170 CLQFSLKAMLPERIVQHLKKVLAAEQVDFEEPALWALARGAQGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA----ALS 292 + I Q++A L + D+ + L + ++ A AL Sbjct: 226 AFGNGKITE----------QEVAAMLGTVDRDWVWRILEPLVSRDEGGRQDVASLFQALQ 275 Query: 293 GQLEEADQIAQIYFSLVKRVHAF 315 + A +++ ++ +H Sbjct: 276 ALADHAPDYSELLGNISTALHRI 298 >gi|218779844|ref|YP_002431162.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum alkenivorans AK-01] gi|218761228|gb|ACL03694.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum alkenivorans AK-01] Length = 706 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 72/357 (20%), Positives = 142/357 (39%), Gaps = 36/357 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + I + L R+ HAL G +G GK T+ A + Sbjct: 5 VLARKYRPQTFDEVVAQPHITETLKNAINQERVAHALCLSGPRGTGKTTVARILAKAMNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K++A+ D + + N +V+++R +R Sbjct: 65 VNGPTPEPCGVCAS------CKEIAASNAVDVFEIDGASNN---------SVEQVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V+FIL + S I TI SR Sbjct: 110 NVQYAPALGNYKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F +S +++ L +L + V + G + A+ +L Sbjct: 170 CQRYDFKRISLDDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYST 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADE-----LLSQDQKIAFDFLIEFILKEICKSA 286 + +D++ + ++ Q + D L + DQ A + ++ ++ ++ Sbjct: 230 GEASFEKVLDILGVAGRKSLFALAQALLDRDVPACLTAVDQLYARGYDLKQVMADLLDHL 289 Query: 287 KAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + + + + + I ++ ++V S +++ + LL K L Sbjct: 290 RDLTVVKTVRDPGPLLDIPPGEIQAMQEQVANASPAFVNQ---VLSLLFKEEAAVRL 343 >gi|325833707|ref|ZP_08166122.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1] gi|325485247|gb|EGC87717.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1] Length = 743 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 135/351 (38%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 5 LYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C+ +A+ D L + V+ +R I Sbjct: 65 CGPTPEPDGTCD------DCVMIANGEHPDVYELDAASRT---------GVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SR Sbjct: 110 RVQFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S ++ L + + D + A G + A+ L +++I Sbjct: 170 CQRFDFRRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSL----EQLI 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEFILK--EICKSAKAA 289 + + + E L + +I + ++D F + E++ ++ + + Sbjct: 226 AFGEGKVTMEVAERLLGSIDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDL 285 Query: 290 ALS------GQLEEADQIAQIYFSLVKRVH-AFSMYNLDRRQMIFHLLSKA 333 A L AD ++ ++ + + ++ DR + +L Sbjct: 286 AEHMRNMYVLSLAGADVALEVSETVRRELASELPLFGPDRLARLLGVLGDL 336 >gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] Length = 627 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 141/345 (40%), Gaps = 29/345 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I K L Q + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPKTFEDVVGQGRIMKTLQQAVENDKVAHAYLFSGPRGTGKTSTAKIFAKALNCV 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K + S D + + + N ++++IR++R Sbjct: 66 HGPTSHPCNECD------VCKHITSGESLDVVEIDAASNR---------SIEDIRQLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G+ ++ +ID V + A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFMPTEGHKKIYIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPERIPMTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY---DCDK 234 F ++ +++ K L + +I + + A G + A+ +L + + Sbjct: 171 QRYDFRRITADDIQKRLAYIADKEEIDLKPDAARMIAVRADGGMRDALSLLDQCVGNGGR 230 Query: 235 IISS--YIDLIHIPRQEYALQKMQQI----ADELLSQ-DQKIAFDFLIEFILKEICKSAK 287 + DL+ + +++ + + L+ D+ + ++ +L ++ + Sbjct: 231 CVDEEIVRDLLGLVGKDWLFSMTAALFSGRGETLIEGIDEVVQAGKEVQNVLADMVMHLR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 A L +++ +A + R + ++L + Sbjct: 291 ALMLYQAAPKSETLAAYADVEKELAAQAESIEPARIFAVLNILQE 335 >gi|323465897|gb|ADX69584.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 595 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 37/304 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAADKGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH-------- 229 F +S+++L K L+Q I D + A G + A+ IL Sbjct: 171 QRYNFKRISKDDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKE 230 Query: 230 ----YDCDKIISSY----IDLIHIPRQEYALQKMQQIADELLSQDQ--KIAFDFLIEFIL 279 D KI I+ I + E + ++A L+Q K D LI+ Sbjct: 231 SVNYQDALKITGFAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMAT 290 Query: 280 KEIC 283 K + Sbjct: 291 KSLM 294 >gi|331087183|ref|ZP_08336253.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408869|gb|EGG88330.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 521 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 41/321 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C +++A + + + + N VD IR IR Sbjct: 66 HPVDGSPCGQC------AMCQKIAEGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + + QL + + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFKRITIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Y+ Q+ + ++ + + I + + A ++G L+ Sbjct: 227 FYL------GQKLKYDDVLEVLGAVDTD------------IFSRMLRQVMARDVAGVLQT 268 Query: 298 ADQIAQIYFSLVKRVHAFSMY 318 +++ L + V F+ Y Sbjct: 269 VEELVMQGRELTQLVADFTWY 289 >gi|242243365|ref|ZP_04797810.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233314|gb|EES35626.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 568 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 120/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + +D + + + N VDEIR IR Sbjct: 66 NSDNGEPCNEC------AICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + ++ ++++ D K AF+ FI + Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|116495715|ref|YP_807449.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC 334] gi|116105865|gb|ABJ71007.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC 334] Length = 565 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNTC------EICQAINNGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEA 298 +++ + +A L G LE++ Sbjct: 290 RDLLVNQQAPTLLGDLEKS 308 >gi|300214871|gb|ADJ79287.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT 5713] Length = 579 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 139/352 (39%), Gaps = 49/352 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L + + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQRFMDLVGQEMVTRTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCR 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 66 FSKEGEPCNEC------ETCKAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ + L+Q + D + AA G + A+ +L Sbjct: 171 QRFDFKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + +Y+ + AL+++QQI ++ +D + LI + Sbjct: 231 NVTLDNALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQ--GKDANRLIEDLINY 288 Query: 278 ILKEIC-KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY----NLDRRQ 324 + + A G+L D + L ++++ +Y L+++Q Sbjct: 289 CRDLLLYQQAPEMVSDGELGLLDN---KFKELSQQINVTQIYQIIDELNKQQ 337 >gi|331083246|ref|ZP_08332359.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404327|gb|EGG83872.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium 6_1_63FAA] Length = 538 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E I L + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + + + + + N VD IR IR Sbjct: 66 HPVDGSPCNTC------KTCRAINEGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ TG ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYRPTTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + L++L + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFRRITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----------- 280 Y+ + + Q ++ ++L QD L E I++ Sbjct: 227 FYLGEKLTYEKVLENLGAVDTQVFSRMLRQILRQDTAGTIKTLDEIIIQGRELGQFVTDF 286 Query: 281 -EICKSAKAAALSGQLEEA-DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 ++ + S EEA D A+ + + L R IF LS Sbjct: 287 IWYLRNLLLISTSEHPEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELS 339 >gi|309390266|gb|ADO78146.1| DNA polymerase III, subunits gamma and tau [Halanaerobium praevalens DSM 2228] Length = 661 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 135/319 (42%), Gaps = 36/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P L G + +++ L + R+ HA LF G +G GK + +A + Sbjct: 6 LYRKYRPENFNDLIGQDQVKQTLKNALKNDRVAHAYLFAGPRGTGKTSAAKVFAKSLNCA 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NP P CN +++ D + + + N +DEIR +R Sbjct: 66 NPTADFEPCGECNS------CQRIEKGNSLDVIEIDAASNR---------GIDEIRELRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+FIL + +++TI SR Sbjct: 111 KVKFYPGEGKYKVYIIDEVHMLTKGAFNALLKTLEEPPDSVVFILATTEPHKVITTIISR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F+ L+ NL K L + D + +A G + AI +L D+ I Sbjct: 171 CQRFDFSLLTLTNLKKRLAYIAQAEGYEIEKEALDILARSARGGMRDAISLL----DQAI 226 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S ++ +QIA L D+ +FLI KE K+ + L+ QLE Sbjct: 227 SFSDGQLN----------AEQIAMMLGRIDKADLKEFLIYLSQKEGQKALEL--LNKQLE 274 Query: 297 EADQIAQIYFSLVKRVHAF 315 I + L++ Sbjct: 275 SGLGIERFSDELIEYCREL 293 >gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aceris str. M302273PT] Length = 461 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|194098698|ref|YP_002001760.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae NCCP11945] gi|193933988|gb|ACF29812.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae NCCP11945] gi|317164296|gb|ADV07837.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae TCDC-NG08107] Length = 736 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 319 QQLALIQAVPSALAHDDPDSDILHRLAQTI 348 >gi|59801160|ref|YP_207872.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA 1090] gi|240112990|ref|ZP_04727480.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae MS11] gi|240118040|ref|ZP_04732102.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID1] gi|240123594|ref|ZP_04736550.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID332] gi|268599069|ref|ZP_06133236.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae MS11] gi|268603753|ref|ZP_06137920.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID1] gi|268682222|ref|ZP_06149084.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID332] gi|59718055|gb|AAW89460.1| putative DNA polymerase III tau and gamma chains [Neisseria gonorrhoeae FA 1090] gi|268583200|gb|EEZ47876.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae MS11] gi|268587884|gb|EEZ52560.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID1] gi|268622506|gb|EEZ54906.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae PID332] Length = 707 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|241760334|ref|ZP_04758429.1| DNA polymerase III subunit tau [Neisseria flavescens SK114] gi|241319212|gb|EER55690.1| DNA polymerase III subunit tau [Neisseria flavescens SK114] Length = 666 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 127/330 (38%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C Q+ S D L + + N +D IR + Sbjct: 65 ENAVHGEPCGQCES------CTQIDSGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + + L + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQK-----IAFDFLIEFILKEI 282 +I ++Y + ++ I + LL + Q+ I FD + + + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A + L D + L + + Sbjct: 290 QRLALIQTIPSALANDDPERETLLRLSQAL 319 >gi|229525663|ref|ZP_04415068.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv. albensis VL426] gi|229339244|gb|EEO04261.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv. albensis VL426] Length = 692 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|311694776|gb|ADP97649.1| DNA polymerase III subunits gamma and tau [marine bacterium HP15] Length = 650 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 128/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L S R+HHA LF G +G+GK T+G A + Sbjct: 5 VLARKWRPRTFEDMVGQEHVLQALIHALESQRLHHAYLFTGTRGVGKTTIGRLLARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + VD++R + Sbjct: 65 ETGVTPNPCGECSS------CQEIQEGRFVDLIEIDAASRT---------GVDDMRELTD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + NA LK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI--------- 227 CL ++ ++ L +I + + AA GS+ A+ + Sbjct: 170 CLQFNLKRMTPEHIAGHLRHVLGAEEIPFEEPALWLLARAADGSMRDALSLTDQAIAFGN 229 Query: 228 -----------LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 L + I ++ + L ++ +I+D + D + L+ Sbjct: 230 QKLSASDVSNMLGTIDQRDIERIVNALVEGDGPALLAEISRISD--FAPDYSVILADLLS 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + + L +A+Q+ + L Sbjct: 288 LFHRVTMEQVVPGSADNALGDAEQVQALARKLSAE 322 >gi|309379703|emb|CBX21692.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 707 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|295676458|ref|YP_003604982.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1002] gi|295436301|gb|ADG15471.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. CCGE1002] Length = 838 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 132/352 (37%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEENVPHEAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVSEDAVRGMLGALDQSYLIRLLDALAQGDGAAVLAVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L AQ + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPSSVLDEWPEAADLRRFADALSAEQVQLFYQIATIGRS 336 >gi|313114018|ref|ZP_07799572.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf. prausnitzii KLE1255] gi|310623638|gb|EFQ07039.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf. prausnitzii KLE1255] Length = 620 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 19/280 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L + R+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPQRFEDVVGQRAIVTALKNQITANRVGHAYLFTGVRGTGKTTCAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + ++ D + + + N VD+IR +R Sbjct: 65 HPVNGDPCGEC------EICKGIDNGSILDVVEMDAASNN---------GVDDIRDLRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 110 TAYTPSACKYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + +E + K+ + + A G++ A+ IL Sbjct: 170 QRYDFTRIGPEDIARRVEYIAGEEKLELSPDGAELIARLADGALRDALSILDTCAGVTAK 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 D++ + +I+D L +QD A L + Sbjct: 230 IDADVVRRMAGVTDRSYLFRISDALEAQDGATALAQLAQL 269 >gi|319399737|gb|EFV87985.1| DNA polymerase III, subunits gamma and tau [Staphylococcus epidermidis FRI909] Length = 568 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + ++ ++++ D K AF+ FI + Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|239630120|ref|ZP_04673151.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527732|gb|EEQ66733.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 566 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L +G+ HA LF G +G GK ++ A + Sbjct: 7 LYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 67 HLEDGEPDNTC------EICQAINNGSLTDVIEIDAASNN---------GVDEIRDIRDK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 112 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 172 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 231 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 232 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYL- 290 Query: 280 KEICKSAKAAALSGQLEEA 298 +++ + +A L G LE++ Sbjct: 291 RDLLVNQQAPTLLGDLEKS 309 >gi|157375987|ref|YP_001474587.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157318361|gb|ABV37459.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 955 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 145/353 (41%), Gaps = 40/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ +++ D + + + K VD+ R + Sbjct: 65 EKGVTASPCGQCSS------CIEISEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+ + + L Q ++ + +A GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTLEEIEQQLTHVLSQEQLSFEPQALKLLAKSANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLI---------EFILKEI 282 + + + + + L + + + + L+ D + + +L+ + Sbjct: 226 AFGAGQVMLTQVQTMLGSIDEHHVITLLNALIQGDIENLMQVTAKVLSFGADPQEVLRSL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + LS A Q++ + S ++ Q+ + LL R+ Sbjct: 286 LELLHQITLSQFAPAAAQLSIYSEQITAFAEQISP---EQIQLYYQLLLTGRK 335 >gi|229529855|ref|ZP_04419245.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae 12129(1)] gi|229333629|gb|EEN99115.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae 12129(1)] Length = 692 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|294141554|ref|YP_003557532.1| DNA polymerase III subunits gamma and tau [Shewanella violacea DSS12] gi|293328023|dbj|BAJ02754.1| DNA polymerase III, gamma and tau subunits [Shewanella violacea DSS12] Length = 943 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 150/353 (42%), Gaps = 40/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGITASPCGQCSS------CVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L Q ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQDEISSQLSYVLTQEQLTFEQPALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQD---------QKIAFDFLIEFILKEI 282 + +H+ + + L + + + + L+ D Q ++F + +L+ + Sbjct: 226 AFGAGSVHLTQVQTMLGSIDEQHVITLLNALVQGDIESLMRVIGQVLSFGADPQEVLRSL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + LS A Q++ + S ++ Q+ + LL R+ Sbjct: 286 LELLHQITLSQFAPAAAQLSIYSEQIKAFAQQLSP---EQVQLYYQLLLTGRK 335 >gi|266621803|ref|ZP_06114738.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi DSM 13479] gi|288866492|gb|EFC98790.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi DSM 13479] Length = 540 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + + L S R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPASFEDVRGQDHVVQTLKNQMVSDRIGHAYLFCGTRGTGKTSIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + + N V+ IR IR Sbjct: 66 SPVDGSPCGECRT------CKNIAAGSSLNVVEIDAASNN---------GVENIREIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 111 VQYPPTEGKYRVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVMSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F ++ + + L++L I D ++ AA G++ A+ +L Sbjct: 171 QRYDFKRITVDTIVTHLQKLTEAEHISVEDKALAYIAKAADGAMRDALSLLDQ 223 >gi|148543563|ref|YP_001270933.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri DSM 20016] gi|184152970|ref|YP_001841311.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri JCM 1112] gi|227363477|ref|ZP_03847599.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri MM2-3] gi|325681913|ref|ZP_08161431.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri MM4-1A] gi|148530597|gb|ABQ82596.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri DSM 20016] gi|183224314|dbj|BAG24831.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri JCM 1112] gi|227071491|gb|EEI09792.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri MM2-3] gi|324978557|gb|EGC15506.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri MM4-1A] Length = 611 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 133/341 (39%), Gaps = 43/341 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + L+D + + + N V+EIR IR Sbjct: 66 HSKDGEPCNEC------EICKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q K+ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAEDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y I AL M+ I DE +D + + LI F Sbjct: 231 EVKLDDALLVTGSVTKQLLKKYFLEISKHEGATALDTMKDILDE--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 I + + +S + Q + + +V+ + ++Y Sbjct: 289 IRDILLYQESPSLISVESTGLKQ--EDFEEIVQLASSATLY 327 >gi|327480432|gb|AEA83742.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri DSM 4166] Length = 672 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 125/321 (38%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGQC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPSRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLGVENVPFEEDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + ++ + L L+E + + ++ + A G Sbjct: 226 AF-------GEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQG--- 275 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 A + ++ +H ++ Sbjct: 276 --PDWAGVLAEMLNVLHRVAI 294 >gi|188584657|ref|YP_001916202.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] Length = 589 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 130/324 (40%), Gaps = 35/324 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Y + L G E + L R+ HA LF G +G GK ++ +A + + Sbjct: 6 LYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAKALNCD 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + D L + + N +DEIR IR Sbjct: 66 HSQDNEPCGQCSR------CIEHDRGTFMDILEIDAASNR---------GIDEIREIRDH 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + + G ++V ++D V + A NALLK+LEEPP V+FIL + + T+ SRC Sbjct: 111 VAYSPSEGNYKVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F LS + + K L+ + + + + G + A+ +L Sbjct: 171 QRFDFYRLSTSKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSL----- 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 S++ + ++ L+ +++ +D L+ ++ A+ + QL + Sbjct: 226 SFLGSGEQLKVDHVLEVTGTVSE-------DTFYDLLMALKEGDL---AQILNIVQQLSD 275 Query: 298 A-DQIAQIYFSLVKRVHAFSMYNL 320 + Q L+ + ++ L Sbjct: 276 SGKDFGQFLNDLIVYLRDLLLFKL 299 >gi|191639203|ref|YP_001988369.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus casei BL23] gi|190713505|emb|CAQ67511.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus casei BL23] gi|327383281|gb|AEA54757.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei LC2W] gi|327386464|gb|AEA57938.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei BD-II] Length = 565 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNTC------EICQAINNGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEA 298 +++ + +A L G LE++ Sbjct: 290 RDLLVNQQAPTLLGDLEKS 308 >gi|153824968|ref|ZP_01977635.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2] gi|149741480|gb|EDM55510.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2] Length = 692 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTEHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|297578658|ref|ZP_06940586.1| DNA polymerase III [Vibrio cholerae RC385] gi|297536252|gb|EFH75085.1| DNA polymerase III [Vibrio cholerae RC385] Length = 692 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|297538152|ref|YP_003673921.1| DNA polymerase III subunits gamma and tau [Methylotenera sp. 301] gi|297257499|gb|ADI29344.1| DNA polymerase III, subunits gamma and tau [Methylotenera sp. 301] Length = 573 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 138/333 (41%), Gaps = 37/333 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTVARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ ++ D + + + N + VD +R + Sbjct: 65 EKGITAKPCGVCDA------CTEIDRGRFVDLIEVDAASNTQ---------VDAMRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ ++ + L+ Q I + + AA GS+ A+ + + Y Sbjct: 170 CLQFNLRQMAGTSIIEHLQNILGQENIPFEPTALHLIARAAAGSMRDALSLTDQAIAYGG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQ---------IADELLSQDQKIAFDFLIEFILKEI 282 + S ++ Q Y Q + IA +++ ++F+ + + + + Sbjct: 230 QTVNESEVRAMLGAIDQSYLYQLINALLANDGASIIAQAKSMEERSLSFEVALNDLAQLL 289 Query: 283 CKSAKAA----ALSGQLEEADQIAQIYFSLVKR 311 + A A +++ L E + + + Sbjct: 290 HQIAVAQTVPDSIADDLPERHLLLDLAQRISSE 322 >gi|325663669|ref|ZP_08152073.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470162|gb|EGC73395.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium 4_1_37FAA] Length = 521 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 41/321 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I + L + R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C +++A + + + + N VD IR IR Sbjct: 66 HPVDGSPCGQC------AMCQKIAEGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + + QL + + ++ AA GS+ A+ +L D+ I+ Sbjct: 171 QRYDFKRITIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Y+ Q+ + ++ + + I + + A ++G L+ Sbjct: 227 FYL------GQKLKYDDVLEVLGAVDTD------------IFSRMLRQVMARDVAGVLQT 268 Query: 298 ADQIAQIYFSLVKRVHAFSMY 318 +++ L + V F+ Y Sbjct: 269 VEELVMQGRELTQLVADFTWY 289 >gi|301067270|ref|YP_003789293.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei str. Zhang] gi|300439677|gb|ADK19443.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei str. Zhang] Length = 565 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNTC------EICQAINNGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQARVKVYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEA 298 +++ + +A L G LE++ Sbjct: 290 RDLLVNQQAPTLLGDLEKS 308 >gi|254226377|ref|ZP_04919965.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51] gi|125621066|gb|EAZ49412.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51] Length = 665 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|302063638|ref|ZP_07255179.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato K40] gi|302133891|ref|ZP_07259881.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 740 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|213968912|ref|ZP_03397052.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] gi|213926211|gb|EEB59766.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] Length = 744 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|167910620|ref|ZP_02497711.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 112] Length = 409 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus NCFM] gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus ATCC 4796] gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus NCFM] gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus acidophilus ATCC 4796] Length = 596 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 26/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECAN------CIAANEGSMPDIMEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F +S+ +L L+Q I + + A G + A+ +L Y+ D Sbjct: 171 QRYNFKRISKEDLENRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSYEKD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + +Y D + I A + +++I LL Q+ A E + + Sbjct: 231 SV--NYEDALQITGFA-ARENIEKILLALLEQNSVNALKLAQESLDQ 274 >gi|301385366|ref|ZP_07233784.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato Max13] Length = 740 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|258621806|ref|ZP_05716837.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573] gi|258586037|gb|EEW10755.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573] Length = 697 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 141/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + L+ +I + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIADE--------LLSQDQ-KIAFDFLIEFILKEIC 283 ++ S I ++ ++AL +Q I+ + + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISQQTPQAVMECIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL + + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLARVL 319 >gi|298368606|ref|ZP_06979924.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282609|gb|EFI24096.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 718 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 24 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 83 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 84 GHAEHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 128 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 129 NAQYAPTAGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 188 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + A GS+ A+ +L Sbjct: 189 CLQFVLRNMTTQQVADHLAHVLESEKIPYEATALQLIGRAGAGSMRDALSLLDQAIAMGS 248 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL + Q++A FD + + + Sbjct: 249 GSVAEQDVRQMIGAVDKQYLYELLAGIVNQDGKALLGKAQEMAARAIGFDSALSELAMLL 308 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + + V+ + Sbjct: 309 QRLALIQAVPSALAGDDPERENLLNFVRAL 338 >gi|28870802|ref|NP_793421.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] gi|28854051|gb|AAO57116.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] Length = 743 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|226309651|ref|YP_002769545.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis NBRC 100599] gi|226092599|dbj|BAH41041.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis NBRC 100599] Length = 565 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 120/320 (37%), Gaps = 37/320 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G E + L R+ HA LF G +G GK + A V Sbjct: 6 LYRVYRPQTFQDVVGQEHVTTTLRNALRENRLSHAYLFNGPRGTGKTSAAKIMAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + +++ ++ D L + + N V+EIR IR Sbjct: 66 QPIDGEPCNQCDT------CRAISNGSVTDVLEIDAASNR---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VKFAPSDVRYKVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ + + L+++ + + V A G A+ +L D+ IS Sbjct: 171 QRFDFHRIPLRVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLI---------EFILKEIC 283 D + + Q +A + D + E L + Sbjct: 227 YSKDEVRASDIMQITGTVAQSYFSVLARHIAENDIAQVMEQFDKVMVQGKDPEQFLHDFL 286 Query: 284 KSAKAAALSGQLEEADQIAQ 303 + L + ++I + Sbjct: 287 YYYRDMLLLKTAPQLEEIVE 306 >gi|154505547|ref|ZP_02042285.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149] gi|153794205|gb|EDN76625.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149] Length = 522 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F PV + + G E I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPVEFEDVKGQEHIITTLKNQIEANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C + +A+ + + + + N VD IR IR Sbjct: 66 HPVNGSPCGEC------AMCRSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L ++ + +V AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRISIETITDRMRDLMQEEQVEVEEKALRYVAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y+ D + ++ ++ +D D + + +++ Sbjct: 227 FYLGQKLTYDNVLEVLGAVDTDVFSRLLRSVIRRDVPKVLDIVDDLVMQ 275 >gi|331092483|ref|ZP_08341306.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400986|gb|EGG80586.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium 2_1_46FAA] Length = 516 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 139/352 (39%), Gaps = 39/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPSEFDDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCQ 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +A A + + + + N VD IR IR Sbjct: 66 HTEDGSPCGEC------EMCRSIALGASMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+F+L + + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFVLATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + L +L + + +V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFKRISIDTIADRLRELMTEENVEVEEKAIRYVAKMADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 Y+ D + ++ ++L +D + E +++ + Sbjct: 227 FYLGQKLTYDHVLEVLGAVDTDVFSRLLRQILKRDVPAVLKSVEELVMQGRELTQMVNDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L+ + +++ + +L + M +D + S Sbjct: 287 TWYLRNLLLAKTSDNMEEVLDVSSENLQQLKEEAEMIEVDILLRYIRIFSDL 338 >gi|15678010|ref|NP_274455.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis MC58] gi|66731921|gb|AAY52154.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis MC58] gi|325199941|gb|ADY95396.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis H44/76] Length = 704 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 290 QHLALIQAVPNALAHDDPDSDILHRLAQTI 319 >gi|238027056|ref|YP_002911287.1| DNA polymerase III subunits gamma and tau [Burkholderia glumae BGR1] gi|237876250|gb|ACR28583.1| DNA polymerase III, subunits gamma and tau [Burkholderia glumae BGR1] Length = 861 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 139/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ ++ + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D + S D E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDAIASSDGPEILAIADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +G L AQ + + ++ Q+ + + + R Sbjct: 286 AGLLHRIA-WAQFAPASVLDEWPEAADLRRFAEALSPEQVQLYYQIATVGR 335 >gi|254480715|ref|ZP_05093962.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma proteobacterium HTCC2148] gi|214039298|gb|EEB79958.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma proteobacterium HTCC2148] Length = 591 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGEMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++A D L + + K V++ R + Sbjct: 65 EQGVSSHPCGECGS------CLEIAEGRSVDLLEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ + LE + + + AA GS+ A+ + + + Sbjct: 170 CLQFNLKNMPPEQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAFGS 229 Query: 233 DKIIS----------------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 K+I ++ + L + ++A+ + D + + D LI Sbjct: 230 GKLIETDVRSMLGSVDLSFVYQLLEGVAAGDPAELLAIVGRMAEH--APDFEGSTDELIS 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + A A+ +AD++A + S+ Sbjct: 288 MVHRVAVAQAVPDAIDNSWGDADRVAALAQSIGAE 322 >gi|167918645|ref|ZP_02505736.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei BCC215] Length = 423 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|291613732|ref|YP_003523889.1| DNA polymerase III, subunits gamma and tau [Sideroxydans lithotrophicus ES-1] gi|291583844|gb|ADE11502.1| DNA polymerase III, subunits gamma and tau [Sideroxydans lithotrophicus ES-1] Length = 537 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 31/354 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 6 VLARKWRPRNFAQLAGQEHVVQALTNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++ S D + L + N + VD +R + Sbjct: 66 ETGVTATPCGVCGA------CTEIDSGRFVDLIELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 SALYAPTSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPSHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 CL L + L+ Q I + V AA GS+ A+ +L Y Sbjct: 171 CLQFNLKQLPPALILTHLQYVLGQENIPFEIGALNLVARAAQGSMRDALSLLDQAIAYSS 230 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQI-----ADELLSQDQKIAFDFLIEFILKEICKSA 286 K+ + + ++ Q Y +Q + A L D E L+++ Sbjct: 231 GKVDEALVRTMLGAIDQGYLFDLLQMLRVEDGAGLLRIADDMAMRSLAFEAALQDLATLL 290 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 AL+ + A IA+ + + + Q+ + + R DL Sbjct: 291 HRIALAQTIPNA--IAEDEPERARLFELAQQFTPEEIQLNYQIAIHGRNEIDLA 342 >gi|114704620|ref|ZP_01437528.1| DNA polymerase III subunit delta [Fulvimarina pelagi HTCC2506] gi|114539405|gb|EAU42525.1| DNA polymerase III subunit delta [Fulvimarina pelagi HTCC2506] Length = 351 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 181/337 (53%), Gaps = 6/337 (1%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 +D P L GH D+ + + GR+HHA L +G +G+GKAT F +A +L Sbjct: 12 LDGVPPPKAQTCLIGHYDMFEEFRSAFAGGRLHHAWLLQGPRGVGKATTAFAFARLLLGV 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P S+ V + +Q+A+ A ++++ + + +R+ ITVDE+RR+ Sbjct: 72 EPVVSREAVTFPDQ---GAVTRQIATDAHPGLIHVTRAAQERGTGFRSQITVDEVRRLAR 128 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T +R+ +IDP D MNRNAANALLK LEEPP++ +F LI+HA +L TIRSR Sbjct: 129 FFHATGVQDGYRIAIIDPADDMNRNAANALLKMLEEPPRRAVFFLINHAPGRLLPTIRSR 188 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 C ++F L + L A+ +K D + AA GSV RA++I Y +I+ Sbjct: 189 CRFLRFAELGDEALLSAIRTVKPDAASENADVLVHAAEGSVRRALQIAEYGGVEILKVLE 248 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 L+ R ++ M +AD+L + ++ ++D +E I I K+++AA +G A + Sbjct: 249 PLLAAHRPDW--NAMGSMADQLSMRGREASYDLAVEVITSTIAKASEAALRTGAPARAAE 306 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 ++ ++ S R+ + YNLDR+Q++ L + E N Sbjct: 307 LSALWQSEKNRIREAAAYNLDRKQVLLTLYDRFHEAN 343 >gi|313906298|ref|ZP_07839641.1| DNA polymerase III, subunits gamma and tau [Eubacterium cellulosolvens 6] gi|313468854|gb|EFR64213.1| DNA polymerase III, subunits gamma and tau [Eubacterium cellulosolvens 6] Length = 542 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 136/329 (41%), Gaps = 31/329 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R F P + + G + I K L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAYLFCGTRGTGKTTIAKVFARAVNCE 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P +P C + + ++ + + + N VD IR IR Sbjct: 66 HPLEDGSPCNEC------ETCRGILKGTSNNVIEIDAASNN---------GVDNIREIRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SR Sbjct: 111 EVGYRPTQGKYKVYIIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH-----YD 231 C F+ ++ + + L +L + D +V A GS+ A+ +L Y Sbjct: 171 CQRYNFHRITIDTIAGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLLDQCIAFYL 230 Query: 232 CDKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKS 285 +K+ ++++ + + ++ + S +I D + E + + Sbjct: 231 GEKLTYEKVLEVLGTVDTDVFSRLLRCVIGGDASSSVRILGDMVREGKEMGQFVTDFIWY 290 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + L E+ + + + ++++ Sbjct: 291 LRNLMLVQNSEDLEDVLDVSTENLEQLRE 319 >gi|295397253|ref|ZP_06807349.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans ATCC 11563] gi|294974500|gb|EFG50231.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans ATCC 11563] Length = 631 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 114/286 (39%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L +G+ HA LF G +G GK + + + Sbjct: 22 LYRVWRPQTFGDIVGQEAVARTLQNAIRTGKTSHAYLFTGPRGTGKTSAAKILSKAINCP 81 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + L D + + + N V+EIR IR Sbjct: 82 NQVDGEPCNEC------EICRAITDGTLPDVIEIDAASNN---------GVEEIRDIRDK 126 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 127 VRYAPTEAQYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 186 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S E+ + L+Q I + + AA G + A+ +L D++IS Sbjct: 187 QRFDFKRISRQSIEDRMAFILDQDGIEFENGALAVIARAANGGMRDALSLL----DQVIS 242 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFI 278 + + +++ + + L + A D L + Sbjct: 243 FSDGTLSLETSRLVTGALSEEQLVEYTEALANGQVTAALDHLHALM 288 >gi|124010461|ref|ZP_01695100.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC 23134] gi|123983439|gb|EAY23927.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC 23134] Length = 575 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 80/361 (22%), Positives = 137/361 (37%), Gaps = 41/361 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G I L S ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F Q + L + + +VD+IR + Sbjct: 66 LTPTEDFEACGTC--ESCVSFQNQ----GSMNVYELDAASSN---------SVDDIRNLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +G +V +ID V ++ +A NA LK+LEEPP+ V+FIL + I+ TI S Sbjct: 111 DQVRYPPQSGKRKVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F + ++ L ++ +I D + A G + A+ + Sbjct: 171 RCQIFDFKRIEVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFS 230 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 D S + +HI +Y +I D LL+QD + + E + K A Sbjct: 231 ADRHITYQSVVKNLHILDHDYYF----KITDALLAQDMPLVLLYFDEILRKGFDGHIFIA 286 Query: 290 ALSGQL--------EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L L ++ ++ + +R N + L+ A +C DL++ Sbjct: 287 GLGAHLRNVMMCKDPATVKLLEVSEKVKQRFAE-QAQNA-SASFLLSALNLANDC-DLHY 343 Query: 342 R 342 + Sbjct: 344 K 344 >gi|303239743|ref|ZP_07326267.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] gi|302592680|gb|EFL62404.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] Length = 555 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 34/291 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + E + K L GR+ HA LF G +G GK T+ ++ + Sbjct: 6 LYRKWRPMVFEDVVEQEHVVKTLKNSISVGRIAHAYLFCGTRGTGKTTMAKIFSRAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + +L D + + + N +VD +R IR Sbjct: 66 NSTNGDPCNEC------EICKGILNGSLLDVIEIDAASNN---------SVDNVREIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VVYAPSKARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ K +E + ++ + + + G++ AI IL D+ IS Sbjct: 171 QRFDFRRIPVESIVKRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISIL----DQCIS 226 Query: 238 ------SYIDLIHIPR--QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D++ + + M D + S++ + + ++ Sbjct: 227 LGNKHLTYDDVLSVVGIVNNTFIADM---VDAINSKEVEKVLYLINVLVMD 274 >gi|94500851|ref|ZP_01307377.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65] gi|94426970|gb|EAT11952.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65] Length = 658 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 132/321 (41%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + L G E + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQFFKDLVGQEHVMRALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++++ D + + + K V++ R I Sbjct: 65 EQGISSEPCGTCQS------CQEISQGRFVDLIEVDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + L+ Q + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERIVGYLQNVLAQESVEFEEPGLWLLGRAAEGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S +I K Q +A L + D+ F I + ++ A E Sbjct: 226 SFGQGVI----------KEQDVAAMLGTVDRGRVFQLAIALAENDAAQALALVAQMA--E 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 A + L+ +H ++ Sbjct: 274 HAVDFNNLLADLINLIHRIAL 294 >gi|225075134|ref|ZP_03718333.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens NRL30031/H210] gi|224953618|gb|EEG34827.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens NRL30031/H210] Length = 666 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 127/330 (38%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C Q+ S D L + + N +D IR + Sbjct: 65 ENAVHGEPCGQCES------CTQIDSGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + + L + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQK-----IAFDFLIEFILKEI 282 +I ++Y + ++ I + LL + Q+ I FD + + + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A + L D + L + + Sbjct: 290 QRLALIQTIPSALANDDPERETLLRLSQAL 319 >gi|163789946|ref|ZP_02184382.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium sp. AT7] gi|159874886|gb|EDP68954.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium sp. AT7] Length = 606 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 137/358 (38%), Gaps = 49/358 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + L+D + + + N V+EIR IR Sbjct: 66 NLKDGEPCNEC------ETCHSITQGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SR Sbjct: 111 AKYAPTSADYKVYIIDEVHMLTTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F +S + L Q KI + + AA G + A+ IL Sbjct: 171 QRFDFKRISVRDSCERMAYILNQEKITYQEEALTVIARAAEGGMRDALSILDQAISYGDD 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y D I + E L +Q I E +D + LI Sbjct: 231 SVTAENAMSVTGSLTQELVLDYFDAIIQHKTEKGLSLLQSILAE--GKDASRFVEDLI-L 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ +A ++ LE A + + + +L + + A +Y + +L+ ++ Sbjct: 288 FSRDLLVYQQAPQMTDLLEGA-NVDEGFKTLSQTITAQQLYE------VIGILNDTQQ 338 >gi|77458032|ref|YP_347537.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens Pf0-1] gi|77382035|gb|ABA73548.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens Pf0-1] Length = 696 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C +++ D + + + K V++ R + Sbjct: 65 ETGITSSPCGEC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + L+ D K + + +L EI Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYDVLHALIEGDAKALLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|269103102|ref|ZP_06155799.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae subsp. damselae CIP 102761] gi|268163000|gb|EEZ41496.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae subsp. damselae CIP 102761] Length = 698 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 37/318 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPAQFADVVGQAHVLTALENALEHNRLHHAYLFSGTRGVGKTTIARIFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D L + + K V++ R + Sbjct: 65 EQGVTAHPCGQC------ATCKEIDEGRFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L + LE + ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKHLDNQQIQTQLEKVLTEEQLAYDIKALSLIARAAEGSMRDALSL----TDQSI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + + L + + + + + ++A D L + +L+E+ Sbjct: 226 ALGNGHVEADKVAAMLGTLDTDQALMLLEAVAQKQAQVAMDTLHQLAQVGVEWDGLLREL 285 Query: 283 CKSAKAAALSGQLEEADQ 300 A+S L E+ Sbjct: 286 AAQLHRIAMSQVLLESQD 303 >gi|331015914|gb|EGH95970.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 736 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|66045069|ref|YP_234910.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae B728a] gi|63255776|gb|AAY36872.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae B728a] Length = 736 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|302185103|ref|ZP_07261776.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae 642] Length = 736 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|226197211|ref|ZP_03792788.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei Pakistan 9] gi|225930590|gb|EEH26600.1| DNA polymerase III, subunits gamma and tau [Burkholderia pseudomallei Pakistan 9] Length = 531 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|258448175|ref|ZP_05696304.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224] gi|257858690|gb|EEV81564.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224] Length = 565 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 117/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYASSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|325264933|ref|ZP_08131661.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5] gi|324029922|gb|EGB91209.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5] Length = 524 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPTEFADVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +A+ + + + + N VD IR IR Sbjct: 66 HPADGSPCGEC------AMCRSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VAYRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + L++L ++ D +V AA GS+ A+ +L D+ I+ Sbjct: 171 QHYDFKRITIETISDRLKELMVTEQVEVEDRAIRYVAKAADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y+ D + + ++ +D D + + +++ Sbjct: 227 FYLGQKLTYDNVLEVLGAVDTDVFSLLLRNIIKRDIPKVLDTVEDLVMQ 275 >gi|316984570|gb|EFV63535.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis H44/76] gi|325140612|gb|EGC63132.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis CU385] gi|325144737|gb|EGC67032.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M01-240013] gi|325205803|gb|ADZ01256.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis M04-240196] Length = 733 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + L ++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + I L + + Sbjct: 319 QHLALIQAVPNALAHDDPDSDILHRLAQTI 348 >gi|167815434|ref|ZP_02447114.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 91] Length = 378 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|167562528|ref|ZP_02355444.1| DNA polymerase III subunits gamma and tau [Burkholderia oklahomensis EO147] Length = 356 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFSELMSPEQVQLYYQIATVGR 335 >gi|209519558|ref|ZP_03268351.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160] gi|209500037|gb|EEA00100.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160] Length = 375 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 134/352 (38%), Gaps = 37/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSTPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPPQ V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPQHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVTHLERILGEENVPHEAQALRLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + L + Q + D L D E L+ + S L Sbjct: 226 AYSANQVSEEAVRGMLGALDQSYLIRLLDALAQGDGTAVLAVADEMALRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +G L AQ + + ++ Q+ + + + R Sbjct: 286 AGLLHRIA-WAQFAPSSVLDEWPEAADLRRFAETLSAEQVQLFYQIATIGRS 336 >gi|291546690|emb|CBL19798.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. SR1/5] Length = 540 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 29/287 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L+ + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDNFDDVKGQDHIVTTLTNQIKANRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K + + + + + + N VD IR IR Sbjct: 66 HPVNGSPCNEC------AMCKAIQAGTAMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ +S + + L +L + + +V GS+ A+ +L D+ IS Sbjct: 171 QRYDFHRISIDTIAARLSELLTAEGVEAEEKAVRYVAKKGDGSMRDALSLL----DQCIS 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 Y+ D + + ++ ++LS D + L + I Sbjct: 227 FYLGQVLTYDKVLDVLGAVDTEVFSRLLRKVLSGDVTGSIHVLEDLI 273 >gi|313673332|ref|YP_004051443.1| DNA polymerase iii, subunits gamma and tau [Calditerrivibrio nitroreducens DSM 19672] gi|312940088|gb|ADR19280.1| DNA polymerase III, subunits gamma and tau [Calditerrivibrio nitroreducens DSM 19672] Length = 529 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 28/290 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L GR+ HA LF G +GIGK T +A V Sbjct: 7 LARKYRPQNFDEIVGQEFVVKTLKNAIELGRISHAYLFTGPRGIGKTTAARVFAKAVNCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ ++ + D + + + N K V+E R IR Sbjct: 67 NPIGVNPCNQCSN------CMEINNGTSVDVIEIDGASNRK---------VEEARNIREN 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 112 VRILPINNKYKVYIIDEVHMLTEEAFNALLKTLEEPPDYVIFILATTDAHKIPMTILSRC 171 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + N + L E+ I + + + + G + A+ ++ Sbjct: 172 QKYDFKKIPNNYMRNYLLSIMEKEGISCDNDSLNLIIRNSDGCMRDALSLIDQLVAFTGG 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 + + +++ + Q+ A I + +++ D FD + EF K I Sbjct: 232 NITYENTSEILDLSEQKLA----NDIFEGIINGDTNNLFDLIDEFSRKGI 277 >gi|254291725|ref|ZP_04962511.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae AM-19226] gi|150422318|gb|EDN14279.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae AM-19226] Length = 692 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|167719247|ref|ZP_02402483.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei DM98] Length = 376 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|329727982|gb|EGG64429.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU144] Length = 568 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNNDVIDIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + ++ ++++ D K AF+ FI + Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|296314215|ref|ZP_06864156.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea ATCC 43768] gi|296839114|gb|EFH23052.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea ATCC 43768] Length = 727 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 128/330 (38%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCES------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 +I ++Y + + I + LL + Q++A FD + + + Sbjct: 230 GSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLVKAQEMAACAVGFDNALGELAMLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 A A+ L D + L + + Sbjct: 290 QHLALIQAVPSALAHDDPDRGVLLPLSQAL 319 >gi|95928309|ref|ZP_01311057.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas acetoxidans DSM 684] gi|95135580|gb|EAT17231.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas acetoxidans DSM 684] Length = 597 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 142/353 (40%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK + A + Sbjct: 5 VMARKWRPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++++S D + + N VD++R +R Sbjct: 65 ENGPSAEPCNQC------QHCEEISSGHSVDVFEIDGASNT---------GVDDVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L + +++ +ID V ++ NA NALLK+LEEPP+ V FI + I TI SR Sbjct: 110 TLRYMPSQCRYKIFIIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L ++ I D + GS+ ++ L D+++ Sbjct: 170 CQRFDFRKIPAPKVVAQLRRIVDAENITISDRALALIAQRGGGSMRDSLSTL----DQVV 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFL---------IEFILKEI 282 + + + + L + + + D L QD + + + +E+ Sbjct: 226 AFCSEQVADEDVQGLLGMVDRRLLFDALEGCMRQDCSMVLNVVRRVDDLGHSFRQFCQEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY-NLDRRQMIFHLLSKAR 334 ++ + A L +E ++ ++ + + + S D Q + +L K Sbjct: 286 VETVRQAILCSLVENPEEDLGVFGDELHALKSLSALAGQDDWQRLLSMLIKVE 338 >gi|330981944|gb|EGH80047.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 736 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|139438753|ref|ZP_01772237.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC 25986] gi|133775833|gb|EBA39653.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC 25986] Length = 825 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 122/321 (38%), Gaps = 32/321 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + G + I L GR+ HA LF G +G GK T+ A +L Sbjct: 4 LYRKYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALLCR 63 Query: 62 PDFSKAPVRM--CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-I 118 + C PD + +A D L + VD +R I Sbjct: 64 NAEAARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRT---------GVDNVREEI 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 ++ G +++ +ID V + A NALLK+LEEPP V+F+L + IL TI Sbjct: 115 INSVNFAPVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETIL 174 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F+ + ++ L EQ D V A G + A+ L Sbjct: 175 SRCQRFDFHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQ---- 230 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 +S + + + A + +++D++L + I + Q Sbjct: 231 -LSVFGN--GSVHADDARSLLGEVSDQILGE--------FSRAIADRDVAELYGL-IRAQ 278 Query: 295 LEEADQIAQIYFSLVKRVHAF 315 +EE + + ++ LV V Sbjct: 279 VEEGNDLLELTRDLVAHVRDV 299 >gi|168333587|ref|ZP_02691852.1| DNA polymerase III, subunits gamma and tau [Epulopiscium sp. 'N.t. morphotype B'] Length = 522 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 34/335 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I K L R+ HA LF G +G GK T +A + Sbjct: 5 LYRKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAYLFTGSRGTGKTTAAKIFARAINCK 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++A A + + L + + VD+IR+I Sbjct: 65 NSVDGKPCEKC------VVCKEIAEGAFVNIIELDAASHN---------GVDDIRQINEE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V ++ A NA+LK+LEEPP V+FIL + I +T+ SRC Sbjct: 110 VLYTPAVGVYKVYIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDC 232 F +S +++ L ++ I + + A G + A+ IL Y Sbjct: 170 QRFDFRRISTSDICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYID 229 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQD---------QKIAFDFLIEFILKEI 282 +KI S + L+ + M + + ++ Q + +L Sbjct: 230 EKITHSKVLKLVGAVDNALLFEMMNAVIEMDAAKAIAVCNEINQQGRNIKQFAKDLLMHT 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 A + E D + L ++ + ++ Sbjct: 290 RNLLIAKTTEQKTEILDYTQEHVRELTQQANELAI 324 >gi|94311067|ref|YP_584277.1| DNA polymerase III subunits gamma and tau [Cupriavidus metallidurans CH34] gi|93354919|gb|ABF09008.1| DNA polymerase III tau/gamma subunit [Cupriavidus metallidurans CH34] Length = 795 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKALNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P C ++ S D++ + + N VDE+ Sbjct: 65 TGPDGNGGITAQPCGQCKA------CTEIDSGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDKAIYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+ + I S + AA+GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEF 277 + Y ++ + ++ Q Y +Q + +A E + D+ ++F ++ Sbjct: 230 IAYSAGQVSEEAVRGMLGAIDQSYLVQLLDALAAEDGATMLGIADSMADRSLSFAGALQD 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA------FSMYNLDRRQMIF 327 + + K A A A+ +++ A+ L ++ A + + NL R ++ Sbjct: 290 LGSLLHKVALAQAVPASVQDEWPEAEDVRRLARQFDAQETQLFYQIANLGRSELAL 345 >gi|331701734|ref|YP_004398693.1| DNA polymerase III subunits gamma and tau [Lactobacillus buchneri NRRL B-30929] gi|329129077|gb|AEB73630.1| DNA polymerase III, subunits gamma and tau [Lactobacillus buchneri NRRL B-30929] Length = 600 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 35/325 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L + + HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L+D + + + N V+EIR IR Sbjct: 66 YLKDGEPCNQC------ETCKAINEGSLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + L+Q K+ D + AA G + A+ IL D+ +S Sbjct: 171 QKFDFKRIKPQDILERMKYILDQKKVEYDDKALKLIAKAAEGGMRDALSIL----DQAMS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + I E AL + +ELL+ ++ + + K+ + + L+E Sbjct: 227 YGDNKIT---YENALLVTGSVTNELLT-------TYMQQVVNKDTKSALIT--IQKILDE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDR 322 ++ L +Y D Sbjct: 275 GKDASRFIEDLTSYCQDILLYQQDP 299 >gi|330960239|gb|EGH60499.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. maculicola str. ES4326] Length = 717 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|329734326|gb|EGG70640.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU028] Length = 568 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDE 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 I+ +++ + + ++ ++++ D K AF+ FI + Sbjct: 231 RLILQDALNVTGSVDEA----ALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|330954421|gb|EGH54681.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae Cit 7] Length = 736 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|327483765|gb|AEA78172.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae LMA3894-4] Length = 692 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 37/332 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + L++ +I + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIA-----------DELLSQDQKIAFDFLIEFILKE 281 ++ S I ++ ++AL +Q I+ + L + + D L++ + + Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAHRGVEW--DGLLQQLSTQ 288 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + + A AL L+++ A SL K + Sbjct: 289 LHRIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|206901396|ref|YP_002251788.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] gi|206740499|gb|ACI19557.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum H-6-12] Length = 521 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 129/344 (37%), Gaps = 30/344 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L + HA LF G +G GK T+ A + Sbjct: 5 LYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALNCV 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C ++A D + + + N +DEIR IR Sbjct: 65 QGPTPTPCLKCES------CVEIAEGRSIDVIEIDAASNR---------GIDEIRDIREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L ++V +ID V + A NALLK LEEPP+ V+FI+ + + TI SRC Sbjct: 110 ARLLPVRDRYKVYIIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F L+ + + K L E+ + + I + GS+ AI +L D Sbjct: 170 QRFDFRRLTRDEVIKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQ 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSAK 287 + +L+ +P E+ + + + + + + + KE+ + + Sbjct: 230 EITEELARNLLGLPTYEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFR 289 Query: 288 AAALSGQLEEADQIAQIY-FSLVKRVHAFSMYNLDRRQMIFHLL 330 L E + + + + +Y + R Q I L Sbjct: 290 NLLLLKADERIGNLLSLTQEEFEELMQETKLYTIKRLQDIIDQL 333 >gi|167034829|ref|YP_001670060.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida GB-1] gi|166861317|gb|ABY99724.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida GB-1] Length = 687 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 124/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLSAENVPFEPDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|167823844|ref|ZP_02455315.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 9] Length = 381 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|167619803|ref|ZP_02388434.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis Bt4] Length = 378 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|256822248|ref|YP_003146211.1| DNA polymerase III subunits gamma and tau [Kangiella koreensis DSM 16069] gi|256795787|gb|ACV26443.1| DNA polymerase III, subunits gamma and tau [Kangiella koreensis DSM 16069] Length = 773 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 137/326 (42%), Gaps = 34/326 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKWRPKNFDELQGQEHVSRALVNAIESGRLHHAYLFTGTRGVGKTTIARILSKCLNC 64 Query: 61 NPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + P C ++ D + + + K VD+ R + Sbjct: 65 ETNGLTSKPCGECGS------CVEIDEGRFVDLIEVDAASRTK---------VDDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ ++ NALLK+LEEPP+ V+F+L + + T+ S Sbjct: 110 ENVQYKPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLS 169 Query: 180 RCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----D 231 RCL + E + K L+Q I + + +A GS+ A+ +L Sbjct: 170 RCLQFHLKHMEEQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLLDQAIAFG 229 Query: 232 CDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIA---------FDFLIEFILKE 281 K+ I ++ ++ ++ ++ +A++ ++ K F ++ +L Sbjct: 230 QGKVQEEDIRTMLGTIDHQFMVKLLEALANKDSAEAIKAVAEMSHYPVDFADALKELLSR 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFS 307 I + A + L++A + + S Sbjct: 290 IHQVAIFQSTGVLLDQAAPYVEDFAS 315 >gi|315633993|ref|ZP_07889282.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis ATCC 33393] gi|315477243|gb|EFU67986.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis ATCC 33393] Length = 681 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 38/332 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 65 VNGVTAEPCGVC------EHCKAIEEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVLGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 C+ +L ++ + + L Q +I D + AA GS+ ++ + Sbjct: 170 CMQFHLKALEQSQIAEHLGYILNQEQIPFESLALDKLASAAQGSIRDSLSLTDQAIAMSN 229 Query: 232 ---CDKIISSYIDLIHIPRQEYAL--------QKMQQIADELLSQDQKIAFDFLIEFILK 280 I++ + L+ + + +K+ Q+ E+ ++ D L+ + + Sbjct: 230 GNVTLNIVNEMLGLLDETQAIEMIYALQQGNGEKLMQVVSEVANKAGDW--DELLREVAE 287 Query: 281 EICKSAKAAAL-SGQLEEADQIAQIYFSLVKR 311 + K A L L EAD I+ + + + Sbjct: 288 NLHKIAMQQLLPQASLTEADHISFLAKHIAPQ 319 >gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT] gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT] Length = 539 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 139/351 (39%), Gaps = 31/351 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R+ HA LF G +G GK + ++ V Sbjct: 6 LYREWRPQTFDEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++++ D + + + K VD+IR + Sbjct: 66 NPQDGEPCNEC------EMCKKISAGLSIDVSEMDAASHNK---------VDDIRDLIEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D + + A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VKYPPQEGRYKVYIMDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L ++ I G + + + G++ A+ IL + Sbjct: 171 QRFDFKRIKSDDILGRLIKITKEQGIFGDNKSLKLIARMSDGAMRDALSILDQAISMGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAK 287 I+++ + E ++ I D+ + +I D + I +K++ + Sbjct: 231 KVDYEQVINMLGLVTNENLIKLTNTIIDKDVENSIRIIDDVVYAGKDINLFIKDMIHHMR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 ++ ++ + + + + + + N R + I + +EC + Sbjct: 291 NLMMAKVTQKPEDVLDMSEENINFLKEQA--NKIRIEEIMRCIRILQECEE 339 >gi|227529515|ref|ZP_03959564.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis ATCC 49540] gi|227350600|gb|EEJ40891.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis ATCC 49540] Length = 609 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 131/341 (38%), Gaps = 43/341 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDDMVGQQVVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNECDT------CKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q K+ + + AA G + A+ IL Sbjct: 171 QRFDFRRISATDSFERMKYILDQKKVEYDEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + + AL+ M+QI E +D + + LI F Sbjct: 231 QVKLDDALLVTGSVTKQLLKKYFLEVCQGQSAPALETMKQILGE--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 I + + + + + L K + +Y Sbjct: 289 IRDVLLYQESPDLIKVESTGLKD--EDFAELSKAASSTILY 327 >gi|218768446|ref|YP_002342958.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis Z2491] gi|121052454|emb|CAM08790.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis Z2491] Length = 709 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 133/330 (40%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVARHLAYVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIINQNGAALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPNALSHDDPDSDILHRLAQTI 319 >gi|170722750|ref|YP_001750438.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida W619] gi|169760753|gb|ACA74069.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida W619] Length = 689 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + LE + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLEAENVPFEPDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGRVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|229523159|ref|ZP_04412566.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM 11079-80] gi|229339522|gb|EEO04537.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM 11079-80] Length = 692 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|167893928|ref|ZP_02481330.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 7894] Length = 387 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|238855363|ref|ZP_04645675.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3] gi|260664921|ref|ZP_05865772.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US] gi|282934593|ref|ZP_06339840.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] gi|238832024|gb|EEQ24349.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3] gi|260561404|gb|EEX27377.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US] gi|281301345|gb|EFA93642.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] Length = 593 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K S A+ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CKAADSGAMPDIIEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ NL LEQ I DS + A G + ++ IL D+++S Sbjct: 171 QRYNFKRISKQNLVDRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D ++I A + +Q+ LL+Q + D + + Sbjct: 227 FEKEKVEYKDALNITGYA-ARETTEQLFLNLLNQKVSESLDLSHKLLQD 274 >gi|15641067|ref|NP_230699.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819387|ref|ZP_01972054.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC 8457] gi|227081227|ref|YP_002809778.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2] gi|229505351|ref|ZP_04394861.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX 330286] gi|229510979|ref|ZP_04400458.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33] gi|229518100|ref|ZP_04407544.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9] gi|229608370|ref|YP_002879018.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236] gi|254848183|ref|ZP_05237533.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10] gi|255745471|ref|ZP_05419419.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101] gi|298498838|ref|ZP_07008645.1| DNA polymerase III [Vibrio cholerae MAK 757] gi|9655520|gb|AAF94213.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510068|gb|EAZ72662.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC 8457] gi|227009115|gb|ACP05327.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2] gi|229344815|gb|EEO09789.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9] gi|229350944|gb|EEO15885.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33] gi|229357574|gb|EEO22491.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX 330286] gi|229371025|gb|ACQ61448.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236] gi|254843888|gb|EET22302.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10] gi|255736546|gb|EET91943.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101] gi|297543171|gb|EFH79221.1| DNA polymerase III [Vibrio cholerae MAK 757] Length = 692 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|293400034|ref|ZP_06644180.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306434|gb|EFE47677.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 601 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 136/343 (39%), Gaps = 34/343 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++G + I + L ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRTYRPNSFDEVYGQKHIVQTLKHAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKTINCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +KA C + D + + + N V+E+R + Sbjct: 66 DEHTKA-CGKCEN------CIAVQEGNHPDIIEIDAASNN---------GVEEVRTLIEK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V M+ A NALLK++EEPP+ V+FIL + +L TI SRC Sbjct: 110 VKYAPLKGKYKVYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRC 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + N++ L ++ D + A G + A+ IL D+ I+ Sbjct: 170 QRFDFTKIPRNDIENRLRDVLQGEQLTCEDEVIRIIAQLADGGLRDALSIL----DQCIA 225 Query: 238 SYIDLIHI-----PRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + I + + + +I D ++ ++ + + I K I L Sbjct: 226 YAQNDIKVHHINEIYGITTITEKLEIIDAIIGKEAVNLLNIVDTLIEKGIDIKRLTVDLI 285 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+E+ I F K + + N + + LS+ + Sbjct: 286 EILKES-----IIFEYTKDIGLLRILNGEEVNHMIERLSRKKR 323 >gi|262165292|ref|ZP_06033029.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223] gi|262025008|gb|EEY43676.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223] Length = 692 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 141/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + L+ +I + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIADE--------LLSQDQ-KIAFDFLIEFILKEIC 283 ++ S I ++ ++AL +Q I+ + + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISQQTPQAVMECIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLAKVL 319 >gi|241895204|ref|ZP_04782500.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC 33313] gi|241871510|gb|EER75261.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC 33313] Length = 588 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 47/345 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L +G++ HA LF G +G GK + +A + Sbjct: 13 LYRTWRPQKFSDMIGQEIVTKTLKNAIITGQITHAYLFNGPRGTGKTSAAKIFAKAINCL 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + L D + L + N VDEIR IR Sbjct: 73 HPVDGEPDGTC------EICQAADNGTLGDIIELDAASNN---------GVDEIREIRED 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 118 VTYAPTRAKYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRT 177 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F ++ + L Q ++ + AA G + A+ IL Sbjct: 178 QRFDFKRINAQSAYERMVYILNQRGNTYDEAALKVIANAADGGMRDALSILDQALSFGDG 237 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 ++ +Y++ + + L K+ ++ DE +D + LI + Sbjct: 238 HVTLDNALLVTGSVTQTLLGNYVEAVVNQDTKQGLAKLSEVLDE--GKDANRFVEDLISY 295 Query: 278 ILKEICKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFS 316 + + ++ +E DQ A ++++++ ++ Sbjct: 296 ARDLLLYTEAPELVTLVPDETFTQLAKDQSANVWYNMIDTLNETQ 340 >gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii OhILAs] gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii OhILAs] Length = 563 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 139/327 (42%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + + L S + HA LF G +G GK + +A V Sbjct: 6 LYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + + D + + + N VD +R IR Sbjct: 66 SAEDANPCNQC------EVCEGILTENIMDVIEIDAASNN---------GVDNVREIREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +++ +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYPPSKGKYKIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + N++ K L E + I + + + + G++ A+ IL Y D Sbjct: 171 QRFDFKPVRINDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTED 230 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 + ++ ++++ + E+ + +IA + S + D L+E ++K+I + Sbjct: 231 TLTYTNVVNILGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 + L+ + D++ + R+ Sbjct: 291 SILLAKMNVQLDELLTLPEERQDRLRQ 317 >gi|30248450|ref|NP_840520.1| dnaX; DNA polymerase III (subunits tau and gamma) protein [Nitrosomonas europaea ATCC 19718] gi|30138336|emb|CAD84344.1| dnaX; DNA polymerase III (subunits tau and gamma) protein [Nitrosomonas europaea ATCC 19718] Length = 525 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 145/361 (40%), Gaps = 39/361 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 6 VLARKWRPKDFSELVGQEHVVRALINSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP C + D + L + N + VD +R + Sbjct: 66 EQGVTAAPCGKC------AACMAIDQGNFIDLIELDAASNTQ---------VDAMRELLD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++R+A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 111 NAQYAPVAARYKVYLIDEVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CD 233 CL + + + + L ++ I + + AA GS+ A+ +L + Sbjct: 171 CLQFNLKQIPPSLIVERLTEILSMEGIPADAAGLRLLAQAAKGSLRDALSLLDQAIAFGN 230 Query: 234 KII--SSYIDLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEI 282 ++ S ++ + Q++ ++ +A++ + + ++FD ++ + + Sbjct: 231 SVVNESDTRAMLGVLDQDHIFALLEALAEQNGAAIFAIADQLEAASVSFDQALQDLAALL 290 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVH--AFSMYNLDRRQMIFHLLSKARECNDLY 340 + A A + L+E +L KR ++ Q++ H + D Y Sbjct: 291 HRLATAQVIPQMLDETQPDGDRLLALTKRFSPEDIQLF----YQIVLHGRTDLAHAPDEY 346 Query: 341 F 341 Sbjct: 347 S 347 >gi|167738244|ref|ZP_02411018.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei 14] Length = 380 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|163782796|ref|ZP_02177792.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881917|gb|EDP75425.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 456 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 34/290 (11%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P + + + G E + L + R+ HA LF G +G+GK T+ A + Sbjct: 6 ARKYRPKFFREVVGQEVPVRILKNAVKNDRVSHAYLFAGPRGVGKTTIARILAKSLNCLN 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C +++ D + + + N +D+IR +R + Sbjct: 66 PKEGEPCGECEN------CQEIDRGNFPDLIEMDAASNR---------GIDDIRALREAV 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T G ++V +ID + + A NALLK+LEEPP + +FIL + IL TI SRC Sbjct: 111 SYTPIKGKFKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKILPTILSRCQ 170 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC------ 232 I F +S++ + L+ + + + + A+ G + A +L Sbjct: 171 RIIFGRVSDDKVIDYLKDICEREGLECEEEALKSIAQASEGCMRDAASLLDQASVIGEGK 230 Query: 233 --DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + S++ ++ +K+++ LL+ D A +L E K Sbjct: 231 VTQEAVESFLGILSA-------EKVREFIRLLLNSDTDGAVRWLNELYRK 273 >gi|21282162|ref|NP_645250.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MW2] gi|49485342|ref|YP_042563.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|300911028|ref|ZP_07128477.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH70] gi|21203598|dbj|BAB94298.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus MW2] gi|49243785|emb|CAG42210.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|300887207|gb|EFK82403.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus subsp. aureus TCH70] Length = 565 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D + + + N VDEIR IR Sbjct: 66 NSTDGEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSELKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S N + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 227 FGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 272 >gi|310639621|ref|YP_003944379.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus polymyxa SC2] gi|309244571|gb|ADO54138.1| DNA polymerase III, subunits gamma and tau [Paenibacillus polymyxa SC2] Length = 590 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + + G + I + L R HA LF G +G GK + A + Sbjct: 13 LYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAINCE 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ + A+ D + + N V+EIR +R Sbjct: 73 HGPAPEPCNEC------EACKRITAGAVMDVQEIDAASNR---------GVEEIRDLRDK 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 118 VKYAPTEVRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRC 177 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S + L +Q I ++ + G + A+ +L D Sbjct: 178 QRFDFRRVSLEEQTERLDLICQQENIQADLDALQYIARLSDGGMRDAVSVLDQISSFTDG 237 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +D+ A ++ ++A LL +D + F+ + Sbjct: 238 RVTYQQVLDM----TGGIASEQFGKLALALLKEDVGTVLQLIENFMQE 281 >gi|284799544|ref|ZP_06390208.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava NJ9703] gi|284797352|gb|EFC52699.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava NJ9703] Length = 398 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 127/330 (38%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C Q+ S D L + + N +D IR + Sbjct: 65 ENAVHGEPCGQCES------CTQIDSGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + + L + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQK-----IAFDFLIEFILKEI 282 +I ++Y + ++ I + LL + Q+ I FD + + + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A + L D + L + + Sbjct: 290 QRLALIQTIPSALANDDPERETLQRLSQAL 319 >gi|260772460|ref|ZP_05881376.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP 69.14] gi|260611599|gb|EEX36802.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP 69.14] Length = 672 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 134/329 (40%), Gaps = 37/329 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPNTFKAVVGQAHVLTALENALTQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + LE + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIRQQLEHVLQAENVNSDSKSLAMIAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIA-----------DELLSQDQKIAFDFLIEFILKE 281 +I + ++ + AL +Q I+ ++L S + D L++ + + Sbjct: 231 VIEHSVVSHMLGTLDTDQALHLLQAISSQQPQIMMACIEQLASNGVEW--DGLLQQLATQ 288 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVK 310 + + A AL +++A L K Sbjct: 289 LHRIAMCQALPSSVDKAQPDTDAIEHLAK 317 >gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM 14484] gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM 14484] Length = 469 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 50/363 (13%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P ++ G E ++ + G++HHA LF G +G GK TL V Sbjct: 6 ARKYRPKKFSQVVGQETAKRVILNAVRLGKLHHAYLFSGPRGTGKTTLARILTRAVNCLN 65 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C + + D + + + N +D+IR ++ + Sbjct: 66 PQEGEPCGECEN------CVAIDKGSFPDLVEMDAASNR---------GIDDIRNLKDAV 110 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S T G ++V ++D + + A NALLK+LEEPP + +F+L + I TI SRC Sbjct: 111 SYTPLKGKYKVYILDEAHMLTKEAFNALLKTLEEPPPRTIFVLCTTEYEKIPPTILSRCQ 170 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC------ 232 I F+ L E+ + L + + + + A+ G++ A+ +L Sbjct: 171 RIVFSKLEEDLVVSHLFYICREEGLNCEEKALRIIARASDGAMRDALSLLDQAATYGEGN 230 Query: 233 --DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKE 281 ++++ ++ ++ +K+++ LL D A L + Sbjct: 231 VSEQVVEEFLGIVSQ-------EKVREFLLLLLEGDVDTALARLRDLHSRGFSITKFWDS 283 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 + + + L L+ Q+ Q+ + H L+ + ++S AR D + Sbjct: 284 LEEEIRNLILIKSLKNPHQVLQV-----EEFHRKVTAPLNALLYLEKVISSAR--LDARY 336 Query: 342 RDF 344 RDF Sbjct: 337 RDF 339 >gi|167845385|ref|ZP_02470893.1| DNA polymerase III subunits gamma and tau [Burkholderia pseudomallei B7210] Length = 391 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I F+ AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGR 335 >gi|221208413|ref|ZP_03581416.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD2] gi|221171826|gb|EEE04270.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD2] Length = 387 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGR 335 >gi|229515436|ref|ZP_04404895.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21] gi|229347205|gb|EEO12165.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21] Length = 692 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|258626249|ref|ZP_05721096.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603] gi|258581301|gb|EEW06203.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603] Length = 688 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 141/329 (42%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQTHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCKEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L +S N+ + L+ +I + + AA GS+ A+ + + Sbjct: 171 LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 235 IISSYI--DLIHIPRQEYALQKMQQIADE--------LLSQDQ-KIAFDFLIEFILKEIC 283 ++ S I ++ ++AL +Q I+ + + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDTDHALHLLQAISQQTPQAVMECIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSVPEASRIESLAKVL 319 >gi|146293398|ref|YP_001183822.1| DNA polymerase III subunits gamma and tau [Shewanella putrefaciens CN-32] gi|145565088|gb|ABP76023.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens CN-32] Length = 957 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL++ + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQQEIGTQLNHILTQEQFPFEVEALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + Q+ L S D++ L +I + + L Sbjct: 226 AFGGGTVMLT----------QVQTMLGSIDEQHVIALLKALTDADI--TVLMQTSAQVLA 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 ++ SL++ +H ++ Sbjct: 274 YGADAQEVLRSLLELLHQITL 294 >gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] Length = 351 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 121/326 (37%), Gaps = 25/326 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + L +G++ HA LF G +G GK + A + Sbjct: 6 LYRQWRPQDFDSLVGQDHVRTTLKNAIIAGKIAHAYLFAGPRGTGKTSTAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P +++ S A D + + N +DEIR +R Sbjct: 66 HGPTPNPCNHC------PHCERINSGASMDVFEIDAASNR---------GIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKFAPVDGRYKVYIIDEVHMLTPEAFNALLKTLEEPPAHVVFILATTEPHKIPATIHSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-DCDKII 236 F + + L ++ + + + A G + A+ IL Sbjct: 171 QRYDFRRIGVKEIEGRLAEVAAKNNLNITPDALKLIAVHADGGMRDALSILDQCTALDDT 230 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + +I L ++D L E + L+ L Sbjct: 231 AVTVTHVRQLLGLIGHEGIWRITAALANRDSTAVLLALDELVALGKDVRQLLLELAQHLR 290 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDR 322 + F V MY+ DR Sbjct: 291 SL-----MLFKAAPDVETIDMYSTDR 311 >gi|308270884|emb|CBX27494.1| hypothetical protein N47_H23160 [uncultured Desulfobacterium sp.] Length = 571 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + + L+ +GR+ HA+L G +G GK T+ A + Sbjct: 17 VFARKYRPQNFDTVVGQKHVTQTLANAISTGRVAHAVLLSGPRGTGKTTVARILAKAMNC 76 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++ + D L + + N V+ +R +R Sbjct: 77 IEGPTPSPCNVCRS------CTEITIGSCVDVLEIDGASNN---------GVENVRDLRD 121 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ A NALLK+LEEPP V+FI + I TI SR Sbjct: 122 NIKYKPAYSRYKIYIIDEVHMLSTQAFNALLKTLEEPPPHVMFIFATTEPHKIPVTILSR 181 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YD 231 C F + +++ + ++ + + AA G + A+ +L + Sbjct: 182 CQRHDFKRIGLDDITDQMLYICKKENVDVSSESLTAIARAAGGCMRDALSLLDLVLSCSE 241 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + D+I + + + + +I D +LS D D L + Sbjct: 242 GRINEENLSDIIGLVDR----RTIFKITDAVLSADIVALLDVLDDL 283 >gi|325142631|gb|EGC65022.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis 961-5945] Length = 709 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 39/306 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + L KI + + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLL-------- 221 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 Q AL + +++ + +L E + I + AAL+ + Sbjct: 222 ----------DQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII--NQDGAALTAKAR 269 Query: 297 EADQIA 302 E A Sbjct: 270 EMAACA 275 >gi|254248057|ref|ZP_04941378.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia PC184] gi|124872833|gb|EAY64549.1| DNA polymerase III, subunits gamma and tau [Burkholderia cenocepacia PC184] Length = 346 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 29/313 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ S + ++ Q Y M ++ D L + + E L+ + S L Sbjct: 230 NEVTESAVSGMLGALDQTY----MVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI 304 + L AQ Sbjct: 286 ASLLHRIA-WAQF 297 >gi|94676847|ref|YP_588586.1| DNA polymerase III, subunits gamma and tau [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219997|gb|ABF14156.1| DNA polymerase III, subunits gamma and tau [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 384 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 44/357 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ + GR+HHA LF G +G+GK T+ A + Sbjct: 6 VLARKWRPQKFTDVVGQEHVITALTNSFLLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P CN + ++ ++ D + + + K V++ R I Sbjct: 66 QDGITTNPCNKCNN------CRDISQNSFIDLIEIDAASRTK---------VEDTREILD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L G ++V +ID V ++R + NALLK+LEEPP + FIL + I TI SR Sbjct: 111 NLQYAPVYGRFKVYLIDEVHMLSRYSFNALLKTLEEPPVHIKFILATTDLHKIPMTILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL LS N + L+ + KI + AA GS+ A+ + D+ I Sbjct: 171 CLQFHLKPLSVNQICNQLKYILISEKIHVEQYALHLLARAADGSMRDALSL----TDQAI 226 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEF-------------I 278 + I L + + + L+S D + +++ EF + Sbjct: 227 AIGQGNISYKIVCMMLGTINAEQSILLLEALVSADSQRVMEYIAEFSTLSINWDKLLVDM 286 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L + A + LS + I QI L + V +L Q+ + +L R+ Sbjct: 287 LSLVHSIAMSQLLSTDINNTYYIDQILPRLRQLVQNIKQEDL---QLYYQILLIGRK 340 >gi|239825603|ref|YP_002948227.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. WCH70] gi|239805896|gb|ACS22961.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. WCH70] Length = 561 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + A V Sbjct: 6 LYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + A+ D L + + N VDEIR IR Sbjct: 66 HAPTAEPCNEC------PACIGITNGAIPDVLEIDAASNN---------RVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L EQ I D + AA G + A+ +L D Sbjct: 171 QRFDFRRIPLHSIVARLRQVIEQQGIKASDEALFAIARAADGGMRDALSLLDQAISFSDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + ++ I + +D + L E + + Sbjct: 231 ELLLEDVLAMTGSVSSATLASLVRAIYE----KDTATSLQLLEEMMDQ 274 >gi|257783925|ref|YP_003179142.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM 20469] gi|257472432|gb|ACV50551.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM 20469] Length = 755 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 127/351 (36%), Gaps = 32/351 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P +++ G + + L + ++ HA LF G +G GK T+ A +L + Sbjct: 4 LYTKYRPQTFEQVVGQKHVVGTLKRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAILCH 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 P C + +A+ D + + N VD +R I Sbjct: 64 EAPGHLPDGTC------EDCQLIAAGQHPDVFEIDAASNT---------GVDNVREEIIS 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S G +V +ID V + A NALLK+LEEPP V FI+ + IL+TI SR Sbjct: 109 RASYAPVCGKGKVYIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSR 168 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY---DCD 233 F S++ + + + L + D+ D + A G + A+ L Sbjct: 169 VQRFDFRSIAADEMAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVYGG 228 Query: 234 KIISS--YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 +IS D++ +A +S +E+ Sbjct: 229 GVISEQTVRDVLGQSSGSLINSAALALAQRDISSLFTTVNTLFEGGKDLLQFTRELAAHV 288 Query: 287 KAAALSGQLE-EADQIAQIYFSLVKRVHAFSMY-NLDRRQMIFHLLSKARE 335 + ++ + ++ +A S + + ++DR + +L A Sbjct: 289 RDLYVATAVGVDSPALANSSASTEQLTKEAQAFGSVDRLSRVLTVLGDAAN 339 >gi|226944093|ref|YP_002799166.1| DNA polymerase III subunits gamma and tau [Azotobacter vinelandii DJ] gi|226719020|gb|ACO78191.1| DNA-directed DNA polymerase III, gamma and tau subunits [Azotobacter vinelandii DJ] Length = 694 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 29/319 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S +P C +++ D + + + K V++ R + Sbjct: 65 ETGISSSPCGQC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL S+ + + L I + AA GS+ A+ + D+ I Sbjct: 170 CLQFALKSMPPERVVEHLSHVLAAEGIPFETDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L ++ + LL D + + + + + SA + + Sbjct: 226 AFGEGRVLAADVRAMLGALDHGQVYGVLQALLEGDARALLEAVRQLAEQGPDWSAVLSEM 285 Query: 292 SGQLEEADQIAQIYFSLVK 310 G L IAQ+ V Sbjct: 286 LGVLHRVA-IAQVLPEAVD 303 >gi|153813525|ref|ZP_01966193.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174] gi|149830396|gb|EDM85488.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174] Length = 537 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 29/287 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L+ + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDNFEDVKGQDHIVTTLTNQINANRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K + + + + + + N VD IR IR Sbjct: 66 HPVNGSPCNEC------EMCKAIQAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VTYRPTEGRYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ +S + + L +L + + +V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 Y+ D + + ++ ++L+ D A L E I Sbjct: 227 FYLGQTLTYDKVLDVLGAVDTEVFSRLLRKVLAGDVTSAIRILEELI 273 >gi|218263761|ref|ZP_03477753.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii DSM 18315] gi|218222520|gb|EEC95170.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii DSM 18315] Length = 606 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 33/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C K ++ L + N +VD+IR + Sbjct: 66 LNPTADGEACNECES------CKAFNEQRSYNIHELDAASNN---------SVDDIRALI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + LE + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + A L + + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAMLSGNVRSAILILNDILSKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQIAQIYFSLVKRVHA 314 L+ + D+ I F + + Sbjct: 287 LASHFRDLLVCKDEATLILFEVGASIRE 314 >gi|291523175|emb|CBK81468.1| DNA polymerase III, subunits gamma and tau [Coprococcus catus GD/7] Length = 528 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 34/349 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPSNFDEVRGQDHIVTTLKNQIEMNRIGHAYLFCGTRGTGKTSIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C + + + + + + N VD IR IR Sbjct: 66 HPVNGSPCNEC------AMCRAVNEQRSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYSPSEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L +L I D+ +V A GS+ A+ +L I Sbjct: 171 QRYDFRRISTGTIAGRLRELADAEGIDAEDAALAYVARMADGSMRDALSLLDQCNAFYIG 230 Query: 238 SYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDFLIEFILK------------EIC 283 + ++ A+ + + SQD + E +++ Sbjct: 231 QKLKYENVLDVLGAVDTSVFGSLLKSICSQDVSGVIHLIDEIVMQGRDLTQFVVDFTWYL 290 Query: 284 KSAKAAALSGQL-EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 ++ SG L + + A+ + + L R IF LS Sbjct: 291 RNLLMVQSSGDLTDLVEASAEQLEVMRQEASGIDASVLMRYIRIFSDLS 339 >gi|229552944|ref|ZP_04441669.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|258540445|ref|YP_003174944.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus Lc 705] gi|229313688|gb|EEN79661.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|257152121|emb|CAR91093.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus Lc 705] Length = 565 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 39/341 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNTC------EICQAINDGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 +++ + +A AL G+LE++ + + L + +Y++ Sbjct: 290 RDLLVNQQAPALLGELEKS-LLDDQFKILSENFKPAQIYHM 329 >gi|167836377|ref|ZP_02463260.1| DNA polymerase III subunits gamma and tau [Burkholderia thailandensis MSMB43] Length = 376 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFSELLSPEQVQLYYQIATLGR 335 >gi|224373508|ref|YP_002607880.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola AmH] gi|223589298|gb|ACM93034.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola AmH] Length = 493 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 31/349 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + + G + I K L R+ HA LF G +G GK T +A + Sbjct: 2 VLALKYRPKRFEEIIGQDAIVKTLVNSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQC 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P C D + + + N K +++IR + Sbjct: 62 DHGPTSNPCEECEN------CIMANESRHIDIIEMDAASNRK---------IEDIRELIE 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V + A NALLK+LEEPP+ V FI+ + + +TI SR Sbjct: 107 HTKYKPSVGKYKIFIIDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSR 166 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +FN + EN L K L + + + AA GSV ++ +L Sbjct: 167 VQHFRFNKIKNGIIENYLIKILAIENVEFDEEALRLIIKAAKGSVRDSLTLLDQ-AIAFS 225 Query: 237 SSYIDLIHIPRQEYAL--QKMQQIADELLSQDQKI-------AFDFLIEFILKEICKSAK 287 IDL + + + + +I D + + D+K D+ IE I+ E+ K Sbjct: 226 KGKIDLDSVVDMLGVINPEIINEIFDAVKNSDKKRIKEIVGEIKDYDIESIIDEVIIYLK 285 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A G L Q +F++V V YN D ++ + + E Sbjct: 286 DALFEGSLPLIT--VQRFFNIVADVKELIKYNTDNEFVLTLMFLRMSEA 332 >gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC 33323] gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC 33323] Length = 602 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 144/354 (40%), Gaps = 38/354 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-----KEICKSAKA 288 K+ Y D + I A +K++Q+ +LL AF+ + + K I + Sbjct: 231 KV--KYDDALKITGYA-AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELIS 287 Query: 289 AALSGQL-----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + G L +EA + + Y + + ++ YNL Q L+ R N Sbjct: 288 LTVKGMLVVKSNKEATFLTKDYVTELAKIPEEKFYNL--VQAANTALNDLRYTN 339 >gi|307256293|ref|ZP_07538076.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865119|gb|EFM97019.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 465 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 142/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|70729286|ref|YP_259023.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens Pf-5] gi|68343585|gb|AAY91191.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens Pf-5] Length = 692 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 124/315 (39%), Gaps = 37/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCCEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMTPERVVEHLSHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + L++ D K + + +L EI Sbjct: 226 AFGEGKVMAADVRAMLGTLDHGQVYDVLHALINGDAKALLEAVRHLAEQGPDWNGVLSEI 285 Query: 283 CKSAKAAALSGQLEE 297 A++ L E Sbjct: 286 LNVLHRVAIAQALPE 300 >gi|302878404|ref|YP_003846968.1| DNA polymerase III, subunits gamma and tau [Gallionella capsiferriformans ES-2] gi|302581193|gb|ADL55204.1| DNA polymerase III, subunits gamma and tau [Gallionella capsiferriformans ES-2] Length = 571 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 141/343 (41%), Gaps = 31/343 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L R+HHA LF G +G+GK T+ +A + Sbjct: 6 VLARKWRPKNFAQLAGQEHVVRALGNALSQNRLHHAYLFTGTRGVGKTTIARIFAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ ++ S D + L + N + VD +R + Sbjct: 66 LTGITATPCGVCSA------CTEIDSGRFVDLIELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 SALYAPTSARFKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + L+ + I + + V AA GS+ A+ + + + Sbjct: 171 CLQFNLKQLPPALIVAHLQHVLTEEHIEFEPAALNLVARAAQGSMRDALSLTDQAIAFSS 230 Query: 233 DKIISS-YIDLIHIPRQEYALQKMQQI-----ADELLSQDQKIAFDFLIEFILKEICKSA 286 K+ S ++ Q Y + + + AD L + + L+E+ Sbjct: 231 GKLEESAMRSMLGAIDQGYLFELLHALHRQNGADLLGVAESMATRSIAFDAALQELASLL 290 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 AL+ + +A IA+ + + + + + Q+ + + Sbjct: 291 HRIALAQTVPQA--IAEDDPERGRVLELAANFTPEEVQLFYQI 331 >gi|317488829|ref|ZP_07947360.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|316912058|gb|EFV33636.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] Length = 506 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 135/351 (38%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E IE+ + ++ HA LF G +G GK T A +L Sbjct: 5 LYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C+ +A+ D L + V+ +R I Sbjct: 65 CGPTPEPDGTCD------DCVMIANGEHPDVYELDAASRT---------GVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SR Sbjct: 110 RVQFAPTRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S ++ L + + D + A G + A+ L +++I Sbjct: 170 CQRFDFRRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSL----EQLI 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEFILK--EICKSAKAA 289 + + + E L + +I + ++D F + E++ ++ + + Sbjct: 226 AFGEGKVTMEVAERLLGSIDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDL 285 Query: 290 ALS------GQLEEADQIAQIYFSLVKRVH-AFSMYNLDRRQMIFHLLSKA 333 A L AD ++ ++ + + ++ DR + +L Sbjct: 286 AEHMRNMYVLSLAGADVALEVSETVRRELASELPLFGPDRLARLLGVLGDL 336 >gi|258509261|ref|YP_003172012.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] gi|257149188|emb|CAR88161.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] gi|259650543|dbj|BAI42705.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus GG] Length = 565 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 140/341 (41%), Gaps = 39/341 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNIC------EICQAINDGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 +++ + +A AL G+LE++ + + L + +Y++ Sbjct: 290 RDLLVNQQAPALLGELEKS-LLDDQFKILSENFKPTQIYHM 329 >gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] Length = 473 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 25/331 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + ++K + + H +F G +G GK TL A + Sbjct: 3 VLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + L + N +DEIRRIR Sbjct: 63 ENREGVEPCNRCRS------CREIDEGTFMDVIELDAASNR---------GIDEIRRIRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SR Sbjct: 108 AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + K L++ I D F+ A G + A+ +L K Sbjct: 168 CQVFEFRNIPDELIEKRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTMLEQ-VWKFS 226 Query: 237 SSYIDL--IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-FILKEICKSAKAAALSG 293 IDL +H +Q ++ + +LS + + F L + + + + A+ Sbjct: 227 EGKIDLETVHRALGLIPIQVVRDYVNAILSGNVRKVFTVLDDVYYSGKDYEVLIQEAVED 286 Query: 294 QLEEADQIAQIYFSLVKRVHAF--SMYNLDR 322 +++ ++ ++Y + + + NL R Sbjct: 287 LVDDLEREERVYNASTSEIVQVSRQLLNLLR 317 >gi|308066974|ref|YP_003868579.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681] gi|305856253|gb|ADM68041.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681] Length = 583 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + + G + I + L R HA LF G +G GK + A + Sbjct: 6 LYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ + A+ D + + N V+EIR +R Sbjct: 66 HGPAPEPCNEC------EACKRITAGAVMDVQEIDAASNR---------GVEEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 111 VKYAPTEVRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S + L+ Q I ++ + G + A+ +L D Sbjct: 171 QRFDFRRVSLEEQTERLDLICRQENIQADSDALQYIARLSDGGMRDAVSVLDQISSFTDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +D+ A ++ ++A LL +D + F+ + Sbjct: 231 RVTYQQVLDM----TGGIASEQFGKLALALLKEDVGTVLQMIENFMQE 274 >gi|82702979|ref|YP_412545.1| DNA-directed DNA polymerase [Nitrosospira multiformis ATCC 25196] gi|82411044|gb|ABB75153.1| DNA polymerase III, tau subunit [Nitrosospira multiformis ATCC 25196] Length = 580 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 135/347 (38%), Gaps = 42/347 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+HHA LF G +GIGK T+ A + Sbjct: 7 VLARKWRPRRFSELTGQDHVVRALTNALEQKRLHHAYLFTGTRGIGKTTIARILAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ ++ D + + + N + V+++R + Sbjct: 67 QAGVTSEPCGVCSA------CIEIDGGRFVDLIEVDAASNTQ---------VEKMRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++++A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 112 NALYAPTVARYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 171 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + LEQ I + + AA GS+ A+ IL D+ I Sbjct: 172 CLQFNLKQIPFPLIVSHLRHVLEQEHINCDATSLQLLARAAQGSMRDALSIL----DQAI 227 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I D L + DQ FD L ++ A+ A++ +E Sbjct: 228 AFGEGKIEEAGVR----------DMLGAVDQGYLFDLLEALAQRD---GARMLAIADAME 274 Query: 297 -EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 + L +H L Q++ + D FR Sbjct: 275 TRSLSFDAALQDLATLLHR-----LTLAQIVPAAIGDDEPERDRIFR 316 >gi|311028952|ref|ZP_07707042.1| DNA polymerase III subunits gamma and tau [Bacillus sp. m3-13] Length = 563 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 133/343 (38%), Gaps = 45/343 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E I K L + HA LF G +G GK + A V Sbjct: 6 LYRVFRPQTFADVVGQEHITKTLQNALLQQKFSHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + ++ D + + + N VDEIR IR Sbjct: 66 HAPVAEPCNECSA------CKGITDGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSSVKYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ L+ +I + AA G + A+ ++ D+ IS Sbjct: 171 QRFDFKRITGESIVGRLATVLQAQEIEAEPQALAIIARAAEGGMRDALSLM----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ--------------IADELLS-----QDQKIAFDFLIEFI 278 L+ + + Q +A L S Q K FL + I Sbjct: 227 FSNGLLTVQDALAITGSVSQSFMTDIVNGLYHKNVAQALDSLNQVFQSGKDPARFLEDLI 286 Query: 279 --LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 +++ A L L+ Q+ + + + + A ++Y Sbjct: 287 FYYRDMLLYKTAPNLEQILDRV-QVDEAFQRFAEEIPAETIYE 328 >gi|260437834|ref|ZP_05791650.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus DSM 2876] gi|292809859|gb|EFF69064.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus DSM 2876] Length = 523 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L S R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKWRPDTFSDVKGQEHIVRTLKNQIESDRVGHAYLFCGTRGTGKTTIAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + + N VD IR+IR Sbjct: 66 HPIDGSPCGEC------AVCKAIANGSSLNVIEIDAASNN---------GVDNIRQIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VAYRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPVTIMSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F +S + + L +L + + ++ A G++ A+ +L + Sbjct: 171 QRYDFKRISVDTIEARLRELVDKEGALAEEKALRYIAKLADGAMRDALSLLDQCMAVNMN 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + E +I ++++++ L E IL+ Sbjct: 231 GELKYEDVLETLGTVDTEIF----SKILRDIINENVPELIAELEELILQ 275 >gi|15596729|ref|NP_250223.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PAO1] gi|9947490|gb|AAG04921.1|AE004581_8 DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa PAO1] Length = 681 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGEC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEI 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|71275385|ref|ZP_00651671.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71898557|ref|ZP_00680728.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|170730362|ref|YP_001775795.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M12] gi|71163685|gb|EAO13401.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71731681|gb|EAO33741.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|167965155|gb|ACA12165.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 601 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + D L + + N VD++R + Sbjct: 65 EQGTSADPCGRCTA------CLDIDVGRYIDLLEIDAASNT---------GVDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + + + ++ +I D+ + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + D L + D+ L I + + + A E Sbjct: 226 AYAGGTLRE----------GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIA--TLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +L + +H + L Sbjct: 274 FSPDWGGVLEALAEALHRIQVQQL 297 >gi|307258490|ref|ZP_07540227.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306867394|gb|EFM99245.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 466 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 142/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|167038707|ref|YP_001661692.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X514] gi|300913734|ref|ZP_07131051.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X561] gi|307723250|ref|YP_003903001.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp. X513] gi|166852947|gb|ABY91356.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X514] gi|300890419|gb|EFK85564.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X561] gi|307580311|gb|ADN53710.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp. X513] Length = 518 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 134/329 (40%), Gaps = 35/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L ++ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + ++ D L + + N +V+++R +R Sbjct: 65 NNTDGEPCNSC------EICQAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ I + + I GS+ AI +L + Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +++ + E + + D + ++D + L + + I +L+ Sbjct: 230 LITYEDVCEMLGVANDEV----LFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLT 285 Query: 293 GQLEE-------ADQIAQIYFSLVKRVHA 314 L + +++ +I +S V+ + Sbjct: 286 YILRDMVLYKTGGEELKEILYSDVETIKE 314 >gi|113970589|ref|YP_734382.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-4] gi|113885273|gb|ABI39325.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-4] Length = 1071 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 146/349 (41%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L+ + ++ + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +++ ++ +++ L+ ++ + D + Q +A+ + +L+ + + Sbjct: 230 GTVMLNQVQSMLGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q + + + ++ Q+ + +L R+ Sbjct: 290 HQITLTQFAPAAAQQSLYSAQIQAFAEQLAP---EQVQLYYQILLTGRK 335 >gi|116333249|ref|YP_794776.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC 367] gi|116098596|gb|ABJ63745.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC 367] Length = 576 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 139/339 (41%), Gaps = 39/339 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + + L + ++ HA LF G +G GK + +A + + Sbjct: 6 LYRVWRPQQFKDMIGQEVVTRTLKNAITTKQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + L+D + + + N V+EIR IR Sbjct: 66 HQTDGEPCNECDT------CQAITNGTLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTVADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 F ++ ++ + L+Q + + + AA G + A+ IL D Sbjct: 171 QRFDFKRIAASDSYSRMTYILDQKGVTYDEQALKVIAKAAEGGMRDALSILDQALSFGDN 230 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI---------EFILKEICKS 285 I+ L+ + + ++++ D K A L E +++ Sbjct: 231 EITLDNALL--VTGSVTHELLATYMQQVVAGDTKAALATLQSVLEAGKDAERFSEDVIGY 288 Query: 286 AKAAALSGQLEEADQIAQI------YFSLVKRVHAFSMY 318 A+ L Q + + A++ + +L ++ A +MY Sbjct: 289 ARDLLLYQQAPQMVEEAEMGSVSEDFQTLAQQTPASAMY 327 >gi|147669204|ref|YP_001214022.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. BAV1] gi|146270152|gb|ABQ17144.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. BAV1] Length = 570 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P L G E + L SGR+ A LF G +G GK + G A V Sbjct: 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 67 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C P + + D + + + N VD+IR ++ Sbjct: 68 TTNQGKGEPCNTC------PMCLSITEGSSMDIIEIDAASNT---------GVDDIRELK 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI S Sbjct: 113 EKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ +S ++ + L ++ I + +A GS +L +I Sbjct: 173 RCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QI 228 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 ++Y I + + + AL ++++ +A+ +L +D K L + + Sbjct: 229 ATTYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRE 288 Query: 291 LSGQLEE 297 L L + Sbjct: 289 LLDYLRQ 295 >gi|323438495|gb|EGA96246.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus O11] Length = 557 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 28/282 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C+ K + D + + + N VDEIR IR + Sbjct: 62 GEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVKYA 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 107 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 166 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 167 FKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDG 222 Query: 242 LIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 223 TLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 264 >gi|87161398|ref|YP_493164.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194233|ref|YP_499025.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508723|ref|YP_001574382.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|87127372|gb|ABD21886.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201791|gb|ABD29601.1| DNA polymerase III, gamma and tau subunits, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367532|gb|ABX28503.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|320139233|gb|EFW31112.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus MRSA131] gi|320142047|gb|EFW33872.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus subsp. aureus MRSA177] Length = 557 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 28/282 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C+ K + D + + + N VDEIR IR + Sbjct: 62 GEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVKYA 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 107 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 166 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 167 FKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDG 222 Query: 242 LIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 223 TLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 264 >gi|167569714|ref|ZP_02362588.1| DNA polymerase III subunits gamma and tau [Burkholderia oklahomensis C6786] Length = 553 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + D E L+ + SA L Sbjct: 230 NEVTETAVSGMLGTLDQTY----MVRLLDALAAADGPQILAVADEMALRSLSFSAALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPASVLDEWPEAADLRRFAELMSPEQVQLYYQIATVGR 335 >gi|323441335|gb|EGA98998.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus O46] Length = 557 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 28/282 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C+ K + D + + + N VDEIR IR + Sbjct: 62 GEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVKYA 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 107 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 166 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 167 FKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDG 222 Query: 242 LIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 223 TLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 264 >gi|307260724|ref|ZP_07542413.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869563|gb|EFN01351.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 466 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQKMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] Length = 533 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + ++ E I + L + R+ HA LF G +G+GK +L A + Sbjct: 5 VLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ + D + + + N +VD+IR ++ Sbjct: 65 VNGPTTTPCNACSN------CLEITAGTSPDVIEIDGASNT---------SVDDIRELQR 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L A++ +++ +ID V +++NA NALLK+LEEPP V+FI + +L TI SR Sbjct: 110 ELLYPASSSNYKIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + ++ + L+++ I + A G + A+ ++ D+ I Sbjct: 170 CQRYDFKRIPIASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLM----DQAI 225 Query: 237 SSYIDLIHIPR 247 S ++ I I + Sbjct: 226 SYCLNNITIDK 236 >gi|149909474|ref|ZP_01898128.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella sp. PE36] gi|149807379|gb|EDM67330.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella sp. PE36] Length = 814 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 139/332 (41%), Gaps = 36/332 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q++ G + + L R+HHA L G +G+GK T+ +A + Sbjct: 5 VLARKWRPHNFQQVVGQQHVLTALVNALEQDRLHHAYLLSGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D L + + K V++ R + Sbjct: 65 EKGITSTPCGEC------STCVEIDQGCYVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK-----ILHYD 231 CL L+ + + L + S + + AA GS+ A+ + H Sbjct: 170 CLQFHLKCLTTEQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSLTDQALSHGA 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQI----ADELLSQDQKIA-----FDFLIEFILKEI 282 + + + +D++ + LQ ++ I A++ +++ +++ FD L + + Sbjct: 230 GEVLYQTVLDMLGTLDHSHMLQLLRLIVSGDANKCMAKIAEVSSLGPDFDQLHVELASLL 289 Query: 283 CKSAKAAALSGQL---EEADQIAQIYFSLVKR 311 + A A L + E AD++ + + Sbjct: 290 HRIAMAQILPSSVVDTEHADKVKALCDDMSPE 321 >gi|329736044|gb|EGG72317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus epidermidis VCU045] Length = 568 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTYVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNNDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L+ + + D+ +F+ A+ G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + + + ++ ++++ D K AF+ FI + Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISE 274 >gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787] gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787] Length = 519 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 29/297 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I K L + R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAYLFCGTRGTGKTSVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P +C+ K ++S + + + + N VD IR IR Sbjct: 66 HPVNGSPCGVCDS------CKAISSGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 111 VAYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + L ++ I + +V AA GS+ A+ IL D+ I+ Sbjct: 171 QRYDFKRITIDTIAARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSIL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 Y+ Q+ + ++ + ++ L+E + ++ KS + G+ Sbjct: 227 FYL------GQKLTYDNVLEVLGAVDTEVFSRLLRELLERNVAKVMKSLDELVMQGR 277 >gi|114047820|ref|YP_738370.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-7] gi|113889262|gb|ABI43313.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-7] Length = 1045 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 146/349 (41%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L+ + ++ + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +++ ++ +++ L+ ++ + D + Q +A+ + +L+ + + Sbjct: 230 GTVMLNQVQSMLGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q + + + ++ Q+ + +L R+ Sbjct: 290 HQITLTQFAPAAAQQSLYSAQIQAFAEQLAP---EQVQLYYQILLTGRK 335 >gi|326795606|ref|YP_004313426.1| DNA polymerase III subunits gamma and tau [Marinomonas mediterranea MMB-1] gi|326546370|gb|ADZ91590.1| DNA polymerase III, subunits gamma and tau [Marinomonas mediterranea MMB-1] Length = 816 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 130/331 (39%), Gaps = 34/331 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S P C+ ++A D + + + K V++ R + Sbjct: 65 ETNGISPEPCGTCSS------CTEIAEGRFVDLIEVDAASRTK---------VEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI S Sbjct: 110 ENVQYAPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 169 Query: 180 RCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RCL ++S + L + + + AA GS+ A+ + Sbjct: 170 RCLQFNLKNMSAQRVVDYLHTVLNAENVGYDQAALWQIGQAANGSMRDALSLTDQAIAFG 229 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKE 281 D + ++ + Q + ++ +AD + D + F + +L Sbjct: 230 DGQITETGVTSMLGLVNQSQIISLLEVVADRNAALTLQKINELADYQPDFAAICASLLDT 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + + A + G L + + + + V Sbjct: 290 LHRVAVEQQVPGVLVDQLGDLERIQHIARTV 320 >gi|253730826|ref|ZP_04864991.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735210|ref|ZP_04869375.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus TCH130] gi|253725438|gb|EES94167.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726874|gb|EES95603.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus TCH130] Length = 557 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 28/282 (9%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + + G E + K L + HA +F G +G GK ++ +A + Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C+ K + D + + + N VDEIR IR + Sbjct: 62 GEPCNECH------ICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVKYA 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 107 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 166 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++S + + + L + +I D F+ A+ G + A+ I+ D+ I+ Sbjct: 167 FKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDG 222 Query: 242 LIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + D+++ D + +F +FI Sbjct: 223 TLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFI 264 >gi|237738484|ref|ZP_04568965.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] gi|229420364|gb|EEO35411.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] Length = 483 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 37/314 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + + G ++I K + +G+ HA LF G +G+GK TL A V Sbjct: 5 LYRKYRPKNFEEVAGQKEIVKTIKTSLRNGKTSHAYLFTGPRGVGKTTLARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D + + + N +DEIR+++ Sbjct: 65 ENGITDEPCNRCEN------CLAINNGTFLDMVEIDAASNR---------GIDEIRQLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++ +ID V + + A NALLK+LEEPP+ V+FIL + + IL TI SR Sbjct: 110 KINYQPVKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS N++ + L + + D + + ++ GSV A+ IL ++ Sbjct: 170 CQRYDFKTLSLNDMKEQLRFIGKNEGVDISDDVLELIYESSGGSVRDAVSILERI---MV 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 + + I + + E L +KM++ E+ ++ L IE K+ Sbjct: 227 TCLGEEITLEKSEEVLGVTSAKKMEEFLMEIKEKNYTKLVKTLDSFWNDSVEIELFFKDF 286 Query: 283 CKSAKAAALSGQLE 296 K K G+LE Sbjct: 287 AKYCKGLMAKGELE 300 >gi|121587397|ref|ZP_01677167.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 2740-80] gi|121548400|gb|EAX58462.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 2740-80] Length = 336 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITATPCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLSQDQ-KIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + Q + +D L++ + ++ Sbjct: 231 VVKSDIVAHMLGTLDADHALHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|83588901|ref|YP_428910.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica ATCC 39073] gi|83571815|gb|ABC18367.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica ATCC 39073] Length = 589 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 29/291 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L +GR+ HA LF G +G GK + A + Sbjct: 7 LYRQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILARAINCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C +++ + D L + + N +DEIR + Sbjct: 67 APREGEPCNECAN------CRRILAGNSLDVLEMDAASNR---------GIDEIRNLIEK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L G ++V +ID V + + A NALLK+LEEPP +FIL + +L TI SRC Sbjct: 112 IPLGPVEGRYKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ L+ + L+++ + + A G + A+ +L D+I++ Sbjct: 172 QRFDFHPLTVQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLL----DQILA 227 Query: 238 S------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 S + + L + + D L + D + + + + I Sbjct: 228 SGTRGPVTAGQVAVTLGTARLDTLLALTDALATGDGAGVLNLVDKALASGI 278 >gi|229542243|ref|ZP_04431303.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans 36D1] gi|229326663|gb|EEN92338.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans 36D1] Length = 563 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L + HA LF G +G GK + A V Sbjct: 6 LYRTWRPQRFADVVGQEHVTKTLQHALLQQKTTHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + D + + + N VD+IR IR Sbjct: 66 HAPTGEPCNEC------AVCRGITDGTIPDVIEIDAASNT---------GVDDIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSVVKYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ +++K L + I + + + AA G + A+ +L D+ +S Sbjct: 171 QRFDFKRITSRDIFKRLAYIAGETGIAYDEQALNIIAHAAEGGMRDALSLL----DQAVS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK 280 + + + Q +A + +D D + + + Sbjct: 227 FSEGKVRVEDALTVTGSISQNDFTRLAQAIQKKDAAECLDLVGSLLQQ 274 >gi|170726146|ref|YP_001760172.1| DNA polymerase III subunits gamma and tau [Shewanella woodyi ATCC 51908] gi|169811493|gb|ACA86077.1| DNA polymerase III, subunits gamma and tau [Shewanella woodyi ATCC 51908] Length = 911 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 147/353 (41%), Gaps = 40/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCSS------CVEISEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + + L Q ++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQDEIIQQLSHVLTQESLVFENQALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLI---------EFILKEI 282 + + + + + L + + + + + D + + E +L+ + Sbjct: 226 AFGGGEVRLKQVQTMLGSIDERHVITLFNAITQGDIEHLMQVISQVLSFGADPEEVLRSL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + LS A Q++ + S ++ Q+ + LL R+ Sbjct: 286 LELLHQITLSQFAPAAAQLSIYSEQISAFAIQLSP---EQVQLYYQLLLTGRK 335 >gi|328956610|ref|YP_004373996.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4] gi|328672934|gb|AEB28980.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4] Length = 605 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 83/358 (23%), Positives = 137/358 (38%), Gaps = 49/358 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + L+D + + + N V+EIR IR Sbjct: 66 NLKDGEPCNEC------EMCQSITQGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SR Sbjct: 111 AKYAPTSAEYKVYIIDEVHMLTTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F +S + L Q KI + + AA G + A+ IL Sbjct: 171 QRFDFKRISVRDSCERMAYILGQEKIEYQEEALTVIARAAEGGMRDALSILDQAISYGDD 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y D I E L +Q I E +D + LI Sbjct: 231 SVTVENAMSVTGSLTQELVLDYFDSIIQHNTEKGLSLLQSILAE--GKDASRFVEDLI-L 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ +A ++ LE A + + + SL + + A +Y + LL+ ++ Sbjct: 288 FSRDLLVYQQAPQMTDLLEGA-NVDEGFKSLSQTITAQQLYK------VIELLNDTQQ 338 >gi|330897699|gb|EGH29118.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. japonica str. M301072PT] Length = 232 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 23/241 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILPTTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKKMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 S 237 + Sbjct: 226 A 226 >gi|255284258|ref|ZP_05348813.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens DSM 14469] gi|255265211|gb|EET58416.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens DSM 14469] Length = 541 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + + + L SGR+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDTFADVKGQDAVVQTLKNQIKSGRVGHAYLFCGTRGTGKTTIAKIMAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +A+ + + + + + N VD IR IR Sbjct: 66 HPVDGSPCNEC------ATCRAIAAGSSLNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S + G ++V +ID V ++ A NALLK+LEEPP V+FIL + + + TI SRC Sbjct: 111 VSYSPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEANKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F + + + L++L K+ D ++ A G++ A+ +L Sbjct: 171 QRYDFKRIPVATIEERLQELLAAEKLEAEDKAVRYIARKADGALRDALSLLDQCIAFFPG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +D++ E +I ++L QD + + L E +++ Sbjct: 231 QKLTYEQTLDVLGAVDTEVF----SRILRKVLKQDVRGLMEELEELVMQ 275 >gi|87122720|ref|ZP_01078595.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121] gi|86162017|gb|EAQ63307.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121] Length = 823 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 29/354 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQNFIELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAKCLNC 64 Query: 61 NPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S P C ++A D + + + K V++ R + Sbjct: 65 ETNGISPEPCGTCGS------CVEIAEGRFVDLIEVDAASRTK---------VEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI S Sbjct: 110 ENVQYTPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILS 169 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RCL ++S + LE+ ++ ++ + AA GS+ A+ + D+ Sbjct: 170 RCLQFNLKNMSPGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSL----TDQA 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 I+ I L + Q + D ++ D + + + A A+ Sbjct: 226 IAFGNGHISETDVTSMLGLVNQAQVVGLLDAIVQSDAANLLKLVNDLADYQPDFVAICAS 285 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDF 344 L L Q+ +L ++ + L +Q+ ++ + + RD Sbjct: 286 LLDLLHRIAIEQQVPGALEDQLGDLAKVKLIAQQVPSEVIQLFYQTMLIGKRDL 339 >gi|325267530|ref|ZP_08134183.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans ATCC 33394] gi|324981055|gb|EGC16714.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans ATCC 33394] Length = 697 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 134/339 (39%), Gaps = 41/339 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L GR+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + D L + + N +D IR + Sbjct: 66 ENAQHGEPCGQCQS------CRDIDAGRFVDLLEIDAASNT---------GIDNIREVLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 111 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 170 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ + L KI+ + + AA GS+ A+ +L D+ I Sbjct: 171 CLQFVLRNLTPQQVADHLTHVLKTEKIVYEPAALALLGRAAQGSMRDALSLL----DQTI 226 Query: 237 S---------SYIDLIHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFI 278 + D+I + Y + + + + +L+ + Q++A FD + + Sbjct: 227 AMGSGSVKETDVRDMIGAVDKRYLYELLTFLMEQDGTQLMQKAQEMAGNAVGFDSALNDL 286 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + + A + G + D + L + Sbjct: 287 AMLLQRLALLKTVPGAVAADDPERERLTQLANYFSDEQI 325 >gi|199599027|ref|ZP_03212434.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus HN001] gi|199590063|gb|EDY98162.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus HN001] Length = 565 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 39/341 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I K L +G+ HA LF G +G GK ++ A + Sbjct: 6 LYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 66 HLEDGEPDNTC------EICQAINDGSLTDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 AKYAPTRARVKVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ ++ K + + +I D+ + AA G + A+ IL Sbjct: 171 QRFDFRRITPEDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDN 230 Query: 231 -----DCDKIISSYIDLIHIPRQEYALQK----MQQIADELL--SQDQKIAFDFLIEFIL 279 D + + L K ++ ++LL +D + LIE++ Sbjct: 231 HVTTEDALDVTGGVTTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYL- 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 +++ + +A AL G+LE++ + + L + +Y++ Sbjct: 290 RDLLVNQQAPALLGELEKS-LLDDQFKILSENFKPAQIYHM 329 >gi|329896154|ref|ZP_08271367.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC3088] gi|328921973|gb|EGG29338.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium IMCC3088] Length = 619 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 144/352 (40%), Gaps = 39/352 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + K L R+HHA LF G +G+GK T+ A Sbjct: 5 VLARKYRPQIFREMVGQEHVLKALINALDHDRLHHAYLFTGTRGVGKTTVARVLAKCFNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P +C+ +++A D + + + K V++ R + Sbjct: 65 DQGVSSEPCGVCSA------CQEIAEGRSVDLIEVDAASRTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ ++ NALLK+LEEPP+ F+L + + +TI SR Sbjct: 110 NVQYAPSRSRYKIYLIDEVHMLSSHSFNALLKTLEEPPEHAKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +LS + + LE+ I + + AA GS+ A+ + + + Sbjct: 170 CLQFHLKNLSPDRISDYLAHVLEREMIQADPAALAELGRAAEGSMRDALSLTDQAIAFGG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL----------IEFILKEI 282 ++ ++ + + + + Q ++D A L ++ + + + Sbjct: 230 GQVRAADVSSMLGSIGSGKVLPLLQALQAGQAKDMLDAVSLLAEHGADFGKVVDMLQQWL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + A A + G + A + +L + + Q+ + +L+ R Sbjct: 290 HQIALAQWVPGSVRHAAMDTEAIQALAHVMAPEDV------QLFYQMLAAGR 335 >gi|307262856|ref|ZP_07544480.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871761|gb|EFN03481.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 466 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|251792166|ref|YP_003006886.1| DNA polymerase III subunits gamma and tau [Aggregatibacter aphrophilus NJ8700] gi|247533553|gb|ACS96799.1| DNA polymerase III subunit tau [Aggregatibacter aphrophilus NJ8700] Length = 680 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 42/356 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFNEVVGQQHVLAALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VNGVTAEPCSEC------EHCKAIEEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + L+Q I D D + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALEPQQISAHLADILQQENIPFEDLALDKLANAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + +++M + DE SQ I + L + +++ + A A + Sbjct: 226 AMSNGNVTLS----VVKEMLGLLDE--SQAIDIIYA-LQQGNGEKLMQVVNAVA-----D 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI-----FHLLSKARECNDLYFRDFYAI 347 +A ++ + + +H +M L + I L+K D+ F FY + Sbjct: 274 KAGDWDELLREVAENLHKIAMQQLLPQPNIDESNQIGFLAKHIAPEDVQF--FYQV 327 >gi|85857923|ref|YP_460125.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB] gi|85721014|gb|ABC75957.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB] Length = 588 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 28/291 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L R+ HA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAINC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + N +DEIR +R Sbjct: 65 EQGPAGTPCNVCTN------CREITEGISMDVREIDGASNR---------GIDEIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V + R A NALLK+LEEPP V+FI + + + +TI SR Sbjct: 110 RIRFLPVSCRYKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F LS + + L ++ KI D+ ++ A GS+ + I D++I Sbjct: 170 CQCFEFRRLSLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIF----DQVI 225 Query: 237 SSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEI 282 S I E L + + Q+++ +L +D + E + Sbjct: 226 SYAGTAIEDEAVEELLGRTDRRFLFQLSEAVLRRDAGQCLRIVEEGYYAGL 276 >gi|20806577|ref|NP_621748.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter tengcongensis MB4] gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter tengcongensis MB4] Length = 518 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L GR+ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D L + + N +V+++R +R Sbjct: 65 NPKDGEPCNSC------EVCQAINTGTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 VIYSPSLTKYKVYIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + LE++ I + + + GS+ AI +L + Sbjct: 170 QRFDFKKIPTKQIAQNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +++ + +E + + D + +D + L + + Sbjct: 230 LITYEDVCEILGVANEEM----LFSLLDHIYEKDAVASLQQLDKIL 271 >gi|218892512|ref|YP_002441379.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa LESB58] gi|218772738|emb|CAW28523.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa LESB58] Length = 699 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGEC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEI 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|323705216|ref|ZP_08116792.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium xylanolyticum LX-11] gi|323535642|gb|EGB25417.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium xylanolyticum LX-11] Length = 530 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 138/339 (40%), Gaps = 30/339 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L SGR+ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +++L D + + + N +VD++R +R Sbjct: 65 NSVDGEPCNKC------QICESANNNSLMDIIEIDAASNN---------SVDDVRELRDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ ++V +ID V ++ +A NALLK+LEEPPQ +FIL + I +TI SRC Sbjct: 110 IIYAPSSCKYKVYIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + + ++++ +I + GS+ AI IL + Sbjct: 170 QRFDFKRISSKVISQNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILEQ-----CA 224 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 SY D++ L + + + L +D K + + +L I + AL Sbjct: 225 SYSDVLTYDDVCDILGTVNDDTLFALVNSLNDRDGKEIIKQIDKLMLYGIDVNNLVKALL 284 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 L + + + + + ++ + +F + Sbjct: 285 SFLRDVIVY-KTCGDESEEILETEINDVIEKASLFDMAF 322 >gi|73748424|ref|YP_307663.1| putative DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. CBDB1] gi|73660140|emb|CAI82747.1| putative DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. CBDB1] Length = 570 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P L G E + L SGR+ A LF G +G GK + G A V Sbjct: 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 67 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C P + + D + + + N VD+IR ++ Sbjct: 68 TTNQGKGEPCNTC------PMCLSITEGSSMDIIEIDAASNT---------GVDDIRELK 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI S Sbjct: 113 EKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ +S ++ + L ++ I + +A GS +L +I Sbjct: 173 RCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QI 228 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 ++Y I + + + AL ++++ +A+ +L +D K L + + Sbjct: 229 ATTYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRE 288 Query: 291 LSGQLEE 297 L L + Sbjct: 289 LLDYLRQ 295 >gi|113868363|ref|YP_726852.1| DNA polymerase III subunits gamma and tau [Ralstonia eutropha H16] gi|113527139|emb|CAJ93484.1| DNA polymerase III tau/gamma subunit [Ralstonia eutropha H16] Length = 784 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 145/356 (40%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 29 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKALNC 88 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P C +++ S D++ + + N VDE+ Sbjct: 89 TGPDGNGGITAQPCGQCKA------CQEIDSGRFVDYIEMDAASNR---------GVDEM 133 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ +G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 134 AQLLDKAVYAPTSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPV 193 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+ + I + + AA+GS+ A+ + Sbjct: 194 TVLSRCLQFNLKQMPPGHIVSHLDHILAQEGIGHDGNALRLLAQAAHGSMRDALSLTDQA 253 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEF 277 + Y ++ + ++ Q Y +Q + +A E + D+ ++F ++ Sbjct: 254 IAYSAGQVSEDAVRGMLGAIDQGYLVQLLDALAAEDGAAMLAIADAMADRSLSFAGALQD 313 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA------FSMYNLDRRQMIF 327 + + K A A A+ +++ A L A + + NL R ++ Sbjct: 314 LGSLLHKVALAQAVPASVQDEWPEADEVRRLAGVFDAQEVQLFYQIANLGRSELAL 369 >gi|161870312|ref|YP_001599482.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis 053442] gi|161595865|gb|ABX73525.1| DNA polymerase III tau and gamma subunit [Neisseria meningitidis 053442] Length = 706 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 39/306 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGEPCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL-------- 221 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 Q AL + +++ + +L E + I + AAL+ + + Sbjct: 222 ----------DQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII--NQDGAALTAKAQ 269 Query: 297 EADQIA 302 E A Sbjct: 270 EMAACA 275 >gi|260913638|ref|ZP_05920114.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC 43325] gi|260632177|gb|EEX50352.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC 43325] Length = 741 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 38/322 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQSHILIALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VNGVTAEPCGEC------EHCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C+ +L + + + LE Q I + + AA GS+ ++ + + Sbjct: 170 CMQFHLKALEQTQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAMSN 229 Query: 232 CDKIISSYIDLIHIPRQEYAL-----------QKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ +++ + A+ + M +I + + D + I + Sbjct: 230 GNITLNVVNEMLGLLDDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDW--DLFLRDIAE 287 Query: 281 EICKSAKAAAL-SGQLEEADQI 301 ++ + A L +L+E++Q+ Sbjct: 288 KLHQIAVKQLLPKDRLDESNQL 309 >gi|289432471|ref|YP_003462344.1| DNA polymerase III subunits gamma/tau [Dehalococcoides sp. GT] gi|288946191|gb|ADC73888.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. GT] Length = 570 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P L G E + L SGR+ A LF G +G GK + G A V Sbjct: 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 67 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C P + + D + + + N VD+IR ++ Sbjct: 68 TTNQGKGEPCNTC------PMCLSITEGSSMDIIEIDAASNT---------GVDDIRELK 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI S Sbjct: 113 EKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ +S ++ + L ++ I + +A GS +L +I Sbjct: 173 RCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ----QI 228 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 ++Y I + + + AL ++++ +A+ +L +D K L + + Sbjct: 229 ATTYGAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRE 288 Query: 291 LSGQLEE 297 L L + Sbjct: 289 LLDYLRQ 295 >gi|166033190|ref|ZP_02236019.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC 27755] gi|166027547|gb|EDR46304.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC 27755] Length = 522 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I + L + R+ HA LF G +G GK T+ +A V Sbjct: 3 LYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + N VD IR IR Sbjct: 63 HPVDGSPCGEC------AVCKAIAAGNSMNVIEIDAASNN---------GVDNIREIREE 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 108 VAYRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRC 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L++L + ++ GS+ A+ +L I Sbjct: 168 QRYDFKRISIETISARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYIG 227 Query: 238 SYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILK 280 + H+ A+ + ++ ++L +D + + E +++ Sbjct: 228 QKLTYDHVLEVLGAVDTEVFSRLLRKILDRDVHSVVEIVDELVMQ 272 >gi|160893580|ref|ZP_02074364.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50] gi|156864565|gb|EDO57996.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50] Length = 575 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 149/354 (42%), Gaps = 43/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + R+ HA LF G +G GK ++ +A V Sbjct: 3 LYRKWRPDTFEEVKGQDHVVTTLKNQIINNRIGHAFLFCGTRGTGKTSIAKLFAKAVNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C + +A + + + + + N VD IR+IR Sbjct: 63 HPINGSPCNEC------AACRAIADGSSMNVIEIDAASNN---------GVDNIRQIREE 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + G ++V +ID V + + A NALLK+LEEPP V+FIL + S I TI SRC Sbjct: 108 VQYSPSEGKYKVYIIDEVHMLTQGAFNALLKTLEEPPAYVIFILATTESHKIPITISSRC 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +S + L +L +I D++ AA GS+ A+ IL D+ I+ Sbjct: 168 QKYEFRRISVETISDRLMELLGREQIEAEKKAVDYIAKAADGSMRDALSIL----DQCIA 223 Query: 238 -------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------E 281 +Y +++ + ++ D ++ D A D + E + + E Sbjct: 224 FNIGKKLTYENVLDTI-GAVDIDVFARLLDCVIKLDVVGAIDLVDEVVWQGRELSRFVSE 282 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMI--FHLLSKA 333 + L EADQ + ++R+ + +D +I ++ S Sbjct: 283 FTWFLRNVLLVKVSPEADQKLDMSAENLERLRQLAA-QIDTDALIRYINIFSDT 335 >gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus pseudintermedius ED99] Length = 567 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 107/279 (38%), Gaps = 30/279 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G E + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMFRPQSFEDVVGQEHVTKTLKNAIAKGKQSHAYIFSGPRGTGKTSIAKIFAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 VRDDGEPCNECAS------CKGITQGYNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +++ N + L Q +I ++ F+ + G + A+ I+ Sbjct: 171 QRFDFKAINANRIVDRLRYVAHQQQIEFDEAALTFIAKVSEGGMRDALSIMD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 I + L+ + L D F +++ Sbjct: 223 ---QAIAFGDERLTLKDALDVTGSLDESDLNALFQDVVQ 258 >gi|270307947|ref|YP_003330005.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS] gi|270153839|gb|ACZ61677.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS] Length = 562 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 133/307 (43%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P L G E + L SGR+ A LF G +G GK + G A V Sbjct: 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 67 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + K P C P + + D + + + N VD+IR ++ Sbjct: 68 TTNQGKGEPCNTC------PMCLSITEGSSMDIIEIDAASNT---------GVDDIRELK 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + + ++V +ID V ++ +A+NALLK+LEEPP +V+FIL + +L TI S Sbjct: 113 EKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ +S +++ + L+++ I + +A GS +L +I Sbjct: 173 RCQRFDFHRVSLSDMTRKLDKISKAEDINIEPEALKLIARSAGGSFRDGENLLQ----QI 228 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 ++Y I + + + AL ++++ +A+ +L +D K L + + Sbjct: 229 ATTYGAEISLSQVQAALGISGDERIKTLAENILKKDIKNGLKTLNAVVADGLDLKQFRRE 288 Query: 291 LSGQLEE 297 L L + Sbjct: 289 LLDYLRQ 295 >gi|307267452|ref|ZP_07548940.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter wiegelii Rt8.B1] gi|306917533|gb|EFN47819.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter wiegelii Rt8.B1] Length = 544 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 124/305 (40%), Gaps = 28/305 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L ++ HA LF G +G GK ++ +A V Sbjct: 29 LYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 88 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + ++ D L + + N +V+++R +R Sbjct: 89 KNTEGEPCNSC------EICQAINNNTTMDVLEIDAASNN---------SVNDVRELRES 133 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 134 VIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRC 193 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ I + + + GS+ AI +L + Sbjct: 194 QRFDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEG 253 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +++ + E + + D + ++D + L + + I +L+ Sbjct: 254 LITYEDVCEMLGVANDEM----LFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLT 309 Query: 293 GQLEE 297 L + Sbjct: 310 YILRD 314 >gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter italicus Ab9] gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter italicus Ab9] Length = 515 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L R+ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + ++ D L + + N +V+++R +R Sbjct: 65 NNAEGEPCNSCD------ICHAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQTKYKVYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ I D + + GS+ AI +L + Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +++ + E + + D + ++D + L + + Sbjct: 230 FITYEDVCEMLGVANDEM----LFSLLDCINAKDVAASLKQLDKIL 271 >gi|152996553|ref|YP_001341388.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MWYL1] gi|150837477|gb|ABR71453.1| DNA polymerase III, subunits gamma and tau [Marinomonas sp. MWYL1] Length = 752 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 134/334 (40%), Gaps = 38/334 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAKCLNC 64 Query: 61 NPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S P C+ +++A D + + + K V++ R + Sbjct: 65 ETNGISPEPCGTCDS------CREIAEGRFVDLIEVDAASRTK---------VEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI S Sbjct: 110 ENVQYAPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RCL ++S + L+ ++ + AA GS+ A+ + Sbjct: 170 RCLQFNLKNMSPQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIAFG 229 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKE 281 + S ++ + Q L ++ +A + +Q D + F + +L Sbjct: 230 NGTISESGVTAMLGLVNQAQVLDLLESVASKNAAQVLTRIEQLADYQPDFTAICGSLLDV 289 Query: 282 ICKSAKAA----ALSGQLEEADQIAQIYFSLVKR 311 + + A AL QL + +I I S+ Sbjct: 290 LHRVAIEQQVPGALMDQLGDLARIQAIAASVSSE 323 >gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei ATCC 43531] gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei ATCC 43531] Length = 615 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 145/356 (40%), Gaps = 46/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS+ SG++ HA LF G +G GK + A + Sbjct: 6 LYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + ++ + D + + N +DEIR +R Sbjct: 66 EGPTLTPCGHCDS------CRSISDGSSMDVFEIDAASNR---------GIDEIRDLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC Sbjct: 111 VKFAPTEGLYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + L ++ I + + + A G + A+ IL D+ + Sbjct: 171 QRYDFHRITVTEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSIL----DQCTA 226 Query: 238 SYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFI------------LK 280 + R + AL ++Q+A+++ ++D L + + L Sbjct: 227 LAEGTLTAERVQEALGLVGRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELA 286 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + +S A + G + A+ A L FS I +L + E Sbjct: 287 QYFRSLMIAGVGGTISAAELCAGDAEQLRADAAQFS------EDEIMTILRRLNET 336 >gi|256826612|ref|YP_003150571.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM 15641] gi|256582755|gb|ACU93889.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM 15641] Length = 900 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 129/351 (36%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E IE+ L ++ HA LF G +G GK T+ A +L Sbjct: 5 LYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C +++A D L + V+ +R I Sbjct: 65 KGPTSEPDGSCRE------CQEIAEGVHPDVYELDAASRT---------GVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++ +ID V ++ A NALLK+LEEPP V+FIL + + TI SR Sbjct: 110 RVNFAPTRGKAKIYIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAI----KILHYDC 232 C F+ LS + L + D + A G + A+ +++ + Sbjct: 170 CQRFDFHRLSNEEIVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGE 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL---------KEI 282 K+ ++ DL+ + +I + +D F ++ ++ +++ Sbjct: 230 GKVTVAGAEDLLGSLDS----SDLAEIMAAVGVRDAAACFSWVASYVETGADLAQFTRDM 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + + + + + ++ +R + +L + Sbjct: 286 AQQVRNLYVMSLAGTDAALDVTDAERRELASELKLFGPNRLTHLLSILGEL 336 >gi|270158083|ref|ZP_06186740.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae D-4968] gi|289163651|ref|YP_003453789.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae NSW150] gi|269990108|gb|EEZ96362.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae D-4968] gi|288856824|emb|CBJ10635.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae NSW150] Length = 549 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 146/348 (41%), Gaps = 32/348 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G + I+ L+ R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQDHIKTALTNALNQQRLHHAYLFTGTRGVGKTSIARILAKSLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C + D + + + V++ R + Sbjct: 66 QGINSMPCLLCGT------CCAIEQGRFIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +G +++ +ID V +++++ NALLK+LEEPP+ V FIL + + T+ SRC Sbjct: 111 VQYLPTSGRFKIYLIDEVHMLSQHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 L LS + + L+ ++ D + AA GS+ A+ +L Sbjct: 171 LQFHLKHLSTELISQQLQLILKDEQLDFESQAVDILAKAARGSMRDALSLLDQAIAGCST 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 S L+ +Q+YALQ +Q +A++ S KI+ +E ++L E+ Sbjct: 231 QLCASDVKMLLGYTQQDYALQLLQALAEQNASMLLKISHQVSLEGGHFQYVLDELLNYLH 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+ + + + + ++ H S + Q+ + + K RE Sbjct: 291 QIAIYQNVGDNNPLITPSSEIINFAHHISA---EDIQLFYQIGLKGRE 335 >gi|78484874|ref|YP_390799.1| DNA-directed DNA polymerase [Thiomicrospira crunogena XCL-2] gi|78363160|gb|ABB41125.1| DNA polymerase III, tau subunit [Thiomicrospira crunogena XCL-2] Length = 696 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 32/307 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + D + + + K V++ R + Sbjct: 65 EQGITSKPCGVC------STCRSIDEGRFVDLIEVDAASKTK---------VEDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPVQGRYKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 CL L+ + + L+Q ++ ++ + +A GS ++ IL Y Sbjct: 170 CLQFNLMRLTLPQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 K+ + ++ + Q++ L + +A+E D L E I + AL Sbjct: 230 GKVQYDAVQAMLGLVDQQFTLNILSALANESA--------DELKEVIQQLALMGVDYTAL 281 Query: 292 SGQLEEA 298 +GQL EA Sbjct: 282 NGQLIEA 288 >gi|15838406|ref|NP_299094.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa 9a5c] gi|9106885|gb|AAF84614.1|AE004002_4 DNA polymerase III subunit [Xylella fastidiosa 9a5c] Length = 608 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + D L + + N VD++R + Sbjct: 65 EQGTSADPCGRCTA------CLDIDVGRYIDLLEIDAASNT---------GVDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + + + ++ +I D+ + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + ++ + D L + D+ L I + + + A E Sbjct: 226 AYAGGVLRE----------GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIA--TLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +L + +H + L Sbjct: 274 FSPDWGGVLEALAEALHRIQVQQL 297 >gi|260440445|ref|ZP_05794261.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae DGI2] Length = 707 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +C Q+ + D L + + N +D IR + Sbjct: 65 ENAQHGELCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 230 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 290 QQLALIQAVPSALAHDDPDSDILHRLAQTI 319 >gi|297543594|ref|YP_003675896.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 516 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L R+ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + ++ D L + + N +V+++R +R Sbjct: 65 NNTEGEPCNSCD------ICHAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQTKYKVYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ I D + + GS+ AI +L + Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +++ + E + + D + ++D + L + + Sbjct: 230 FITYEDVCEMLGVANDEM----LFSLLDYINAKDVAASLKQLDKIL 271 >gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli 95/1000] gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli 95/1000] Length = 521 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 30/291 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P Q+ + D + + + N ++ IR I Sbjct: 67 VNGPTDKPCGVC------PSCTQIENGTPLDVIEIDGASNR---------GIENIRTIIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIRSR Sbjct: 112 NVRISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSR 171 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F SL +L K L++ I D + A GSV + IL +K+I Sbjct: 172 CQQYIFKSLGIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETIL----EKMI 227 Query: 237 SSYIDLIHIPRQEYA-------LQKMQQIADELLSQDQKIAFDFLIEFILK 280 + D HI + ++ D ++S+D+K F F+ + + Sbjct: 228 AYTADKKHITSGDVIAVVGGNNFSFVKDFFDVMISKDKKNYFQFVKKLFEE 278 >gi|296113237|ref|YP_003627175.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis RH4] gi|295920931|gb|ADG61282.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis RH4] Length = 748 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 154/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + AA GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGV 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC 6026] Length = 602 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 26/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L+Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 K+ Y D + I A +K++Q+ LL+ + A + + + Sbjct: 231 KV--KYEDALRITGYA-AQEKIEQVLLNLLNGETSAALEIVHALLQD 274 >gi|330502977|ref|YP_004379846.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina NK-01] gi|328917263|gb|AEB58094.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina NK-01] Length = 710 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 124/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGISSTPCGTC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYSPSRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLTAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + L+ D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLHALIEGDARALIEAVRHLAEQGPDWNGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L +A Sbjct: 286 LNVLHRVAIAQALPDA 301 >gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena ATCC 35185] gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena ATCC 35185] Length = 691 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 24/282 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + L G + + LS +GR+ HA LF G +G GK + A + Sbjct: 33 LYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNCE 92 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C ++A D + + N +DE+R +R Sbjct: 93 KGPTPEPCGVCKN------CTKIADGTALDVFEIDAASNR---------GIDEMRDLREK 137 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V + A NALLK+LEEPP V+FIL + + +TI+SRC Sbjct: 138 VKFTPAEGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRC 197 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F ++ + L +++KI + A G + A+ +L D D Sbjct: 198 QRFDFRRITVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGD 257 Query: 234 KIISSYIDL-IHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + ++ ++ + + E + + I + + + + L Sbjct: 258 TLTAACVEENLGLIGHEPIYRLTKAIGERAKGEVLETIAELL 299 >gi|160936876|ref|ZP_02084240.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC BAA-613] gi|158440066|gb|EDP17813.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC BAA-613] Length = 560 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 32/328 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + PV + + G + I + L S R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P + + S + + + + + N V+ IR IR Sbjct: 66 HPVDGSPCNEC------PTCRSIQSGSSMNVVEIDAASNN---------GVENIRDIREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F +S + L +L +I D +V AA GS+ A+ +L HY Sbjct: 171 QRYDFKRISLETIANRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLLDQCVAFHYG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADE------LLSQDQKIAFDFLIEFILKEICKS 285 + ++++ Q I + ++ I L +F+ I Sbjct: 231 KVLTYDNALEVLGAVDSGVFSQMFGAIVEGRTKDCICSLEEIVIQGRELGQFVTDFIWYM 290 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVH 313 + L ++A+ + + +K++ Sbjct: 291 -RNLLLIQSADDAEGLVDMSEENLKQLR 317 >gi|312882074|ref|ZP_07741824.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus ATCC BAA-2122] gi|309370210|gb|EFP97712.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus ATCC BAA-2122] Length = 671 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 71/354 (20%), Positives = 141/354 (39%), Gaps = 43/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G + L R+HHA L G +G+GK T+G +A + Sbjct: 6 LARKWRPTQFNQVVGQRHVLTALENALAQNRLHHAYLLSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + + K V++ R + Sbjct: 66 TGITAQPCGQC------STCQEIDQGRFVDLLEIDAASRTK---------VEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 L + + + L Q ++ + AA GS+ A+ + + Sbjct: 171 LQFDLKPIESEEIQQQLTYILGQEQVESETRALSLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 KIISSYID-LIHIPRQEYALQKMQQIADELLSQDQK---------IAFDFLIEFILKEIC 283 ++++ + ++ ++AL+ + I + + + +D L++ + ++ Sbjct: 231 RVMTDSVTYMLGTLDTDHALRLLAAIGTQQPQEAMDCVSFLAKNGVDWDGLLDQLATQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR--QMIFHLLSKARE 335 + A L L+ A+ L + LD + Q+ + + K R Sbjct: 291 RIAMCQVLPESLDPQHADAEKVRQLSQA--------LDPQDVQLYYQMALKGRR 336 >gi|242372721|ref|ZP_04818295.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242349638|gb|EES41239.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 560 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 111/275 (40%), Gaps = 28/275 (10%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 2 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDD 61 Query: 66 KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT 125 P C + + D + + + N VDEIR IR + Sbjct: 62 GEPCNEC------EICRGITQGTNSDVIEIDAASNN---------GVDEIRNIRDKVKYA 106 Query: 126 ANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 107 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 166 Query: 186 FNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 F ++S + + L + + ++ +F+ A+ G + A+ I+ D+ I+ + Sbjct: 167 FKAISMDQIVDRLKFVADSQSLDYDEAALEFIAKASEGGMRDALSIM----DQAIAFGEE 222 Query: 242 LIHIPR-----QEYALQKMQQIADELLSQDQKIAF 271 + + + ++ ++++ D K AF Sbjct: 223 KLTLQDALNVTGSVDEAALNELFKDVVNGDVKAAF 257 >gi|221215165|ref|ZP_03588132.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD1] gi|221165101|gb|EED97580.1| DNA polymerase III, subunits gamma and tau [Burkholderia multivorans CGD1] Length = 498 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ GR+HHA LF G +G+GK TL +A + Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 ETGVTSQPCGVCRA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ LE++ +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +++ + + ++ Q Y M ++ D L + E L+ + S L Sbjct: 230 NEVTEAAVSGMLGALDQTY----MVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQI--------YFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L AQ + + + ++ Q+ + + + R Sbjct: 286 ASLLHRIA-WAQFAPGSVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGR 335 >gi|262038579|ref|ZP_06011948.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] gi|261747448|gb|EEY34918.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] Length = 501 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 139/347 (40%), Gaps = 32/347 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G E + + + ++ HA LF G +G+GK T+ A V Sbjct: 10 LYRKYRPQNFDEIAGQEFVTRAIKNSLREDKLSHAYLFTGPRGVGKTTIARLIAKGVNCL 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P +C+ +++A D + + + N +DEIR ++ Sbjct: 70 NNGITDNPCGVCDN------CREIAQGISMDMIEIDAASNR---------GIDEIRELKE 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++ +ID V + + A NALLK+LEEPP V+FIL + I T+ SR Sbjct: 115 KINYQPVKGRRKIYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEIDKIPDTVISR 174 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + E ++ K L E+ I D D + + GS + I Sbjct: 175 CQRYDFLPIDEKDITKLLKEVAEKENITIDDESLDLIYRKSEGSARDSFSIFEQVISNFN 234 Query: 237 SSYIDLIHIPRQEYALQKM--QQIADELLSQDQKIAFDFL---------IEFILKEICKS 285 ID+ + + + Q + + +++ DF+ IE LK+ Sbjct: 235 GEDIDISKTQKALGVVPDIVLNQFLELIQKGNKEELLDFMDKIWEEGLVIETFLKDFAYY 294 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 K + D I S+ ++ F Y D+R + + L+ + Sbjct: 295 LKEQFKKDRGLSIDFILNTVSSIFFILNEFR-YEEDKRLLGYVLVHE 340 >gi|291043744|ref|ZP_06569460.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2] gi|291012207|gb|EFE04196.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2] Length = 736 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 34 VLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +C Q+ + D L + + N +D IR + Sbjct: 94 ENAQHGELCGVCQS------CTQIDAGRYVDLLEIDAASNT---------GIDNIREVLE 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L KI + AA GS+ A+ +L Sbjct: 199 CLQFVLRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGS 258 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLSQDQKIA-----FDFLIEFILKEI 282 + +I ++Y + + I + LL++ Q++A FD + + + Sbjct: 259 GKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILL 318 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + A A+ L D + I L + + Sbjct: 319 QQLALIQAVPSALAHDDPDSDILHRLAQTI 348 >gi|152988097|ref|YP_001349155.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PA7] gi|150963255|gb|ABR85280.1| DNA polymerase III subunit tau [Pseudomonas aeruginosa PA7] Length = 681 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 123/316 (38%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGEC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLQALLDGDARALLEAVRHLAEQGPDWGGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|197116612|ref|YP_002137039.1| DNA polymerase III, gamma/tau subunits [Geobacter bemidjiensis Bem] gi|197085972|gb|ACH37243.1| DNA polymerase III, gamma and tau subunits [Geobacter bemidjiensis Bem] Length = 582 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 123/330 (37%), Gaps = 29/330 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + N VD+IR +R Sbjct: 65 ESGLTVEPCNTC------STCLEITEGNSVDVFEIDGASNT---------GVDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F ++ + L +Q + D V GS+ ++ L Sbjct: 170 CQRFDFKRIALPRIVSRLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSA 286 + L+ + + + +++ + L Q +F + + +E+ Sbjct: 230 NQVADADVAALLGVVDRRLIMDGCRAVLSKEVREALQIVAQVDSFGYSMRQFCRELIDQF 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 + A+ + E + ++ + + + + Sbjct: 290 RNVAILKAVGEPGDLLELSEAELGELRTLA 319 >gi|331270686|ref|YP_004397178.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum BKT015925] gi|329127236|gb|AEB77181.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum BKT015925] Length = 541 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 129/330 (39%), Gaps = 29/330 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L + R+ HA LF G +G GK + ++ V Sbjct: 6 LYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K++ + D + + + K VD+IR + Sbjct: 66 NPQDGEPCNECD------MCKKINAGLAIDVSEMDAASHNK---------VDDIRDLIEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D + + A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VKYPPREGKYKVYIMDEAHMLTQGAVNAFLKTLEEPPENVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ + L ++ I + + + G++ A+ IL + Sbjct: 171 QRFDFKRIKSDDILQRLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAK 287 I+++ + + L+ I D+ + +I D + I +K++ + Sbjct: 231 KVDYEQVINMLGLVTNDNLLKLTNAIIDKDVENSIRIIDDVVYGGKDINLFIKDMIHHMR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + + + + + + + S Sbjct: 291 NLMMVKVSQNPEDVLDMSEENINFLKEQST 320 >gi|253999384|ref|YP_003051447.1| DNA polymerase III subunits gamma and tau [Methylovorus sp. SIP3-4] gi|253986063|gb|ACT50920.1| DNA polymerase III, subunits gamma and tau [Methylovorus sp. SIP3-4] Length = 610 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 41/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D L + + N + VD +R + Sbjct: 65 ETGITAHPCGVCSA------CVDIDRGRFVDMLEVDAASNTQ---------VDSMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++R+A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTVGRFKVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +S + L++ I + AA GS+ A+ +L D+ I Sbjct: 170 CLQFNLRQMSTPAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + ++ L + Q + D L++QD L KS + +L Sbjct: 226 AYGGNRVNESEVRAMLGAIDQSYLYGLLDALIAQDGPS---------LMAQAKSMEERSL 276 Query: 292 SGQLEEADQIAQIYFSL--VKRVHAFSMYNLDRRQMIFHLLSKA-RECNDLYFRD 343 S AD +AQ+ L + V +L R + L +K + LY++ Sbjct: 277 SFDTALAD-LAQLLHHLAVAQTVPESIPLDLPERTALLDLATKLPADKVQLYYQI 330 >gi|154490847|ref|ZP_02030788.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC 43184] gi|154088595|gb|EDN87639.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC 43184] Length = 606 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 33/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + L S ++ HA LF G +G+GK + +A + Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C K ++ L + N +VD+IR + Sbjct: 66 LNPTADGEACNECES------CKAFNEQRSYNIHELDAASNN---------SVDDIRALI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP LFIL + +L TI S Sbjct: 111 DQVRIPPPIGKYKVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ +S ++ + LE + + + A G + A+ I Sbjct: 171 RCQIYDFSRISIADMVEHLEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + + + ID +++ EY ++ D +LS + + A L + + K Sbjct: 231 NGNITYQAVIDNLNVLDYEYYF----RLTDAMLSGNVRSAILILNDILSKGFDGQNIITG 286 Query: 291 LSGQLEEA----DQIAQIYFSLVKRVHA 314 L+ + D+ I F + + Sbjct: 287 LASHFRDLLVCKDEATLILFEVGASIRE 314 >gi|194290032|ref|YP_002005939.1| DNA polymerase III subunits gamma and tau [Cupriavidus taiwanensis LMG 19424] gi|193223867|emb|CAQ69876.1| DNA POLYMERASE III (SUBUNITS TAU AND GAMMA) [Cupriavidus taiwanensis LMG 19424] Length = 769 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKALNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C +++ S D++ + + N VDE+ Sbjct: 65 TGPDGSGGITAEPCGQCKA------CQEIDSGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 110 AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+ + I + + AA+GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDHILAQEGIAHDGNALRLLAQAAHGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEF 277 + Y ++ + ++ Q Y +Q + +A E + D+ ++F ++ Sbjct: 230 IAYSAGQVSEEAVRGMLGAIDQGYLVQLLDALAAEDGAAMLAIADAMADRSLSFAGALQD 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA------FSMYNLDRRQMIF 327 + + K A A A+ +++ A L A + + NL R ++ Sbjct: 290 LGSLLHKVALAQAVPASVQDEWPEADEVRRLAGVFDAQEVQLFYQIANLGRSELAL 345 >gi|295107929|emb|CBL21882.1| DNA polymerase III, subunits gamma and tau [Ruminococcus obeum A2-162] Length = 529 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 29/287 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L+ + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDNFADVKGQDHIVTTLTNQINANRIGHAYLFCGTRGTGKTTVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C K + + + + + + N VD IR IR Sbjct: 66 HPINGSPCNEC------EMCKAIQAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ +S + + L +L + + +V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 Y+ D + + ++ ++L+ D L + I Sbjct: 227 FYLGQTLTYDKVLDVLGAVDTEVFSKLLRKVLAGDVTSTIRILEDLI 273 >gi|257454969|ref|ZP_05620217.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60] gi|257447679|gb|EEV22674.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60] Length = 697 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 147/370 (39%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L + R+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPKNFHELLGQEHVSKALINAIHNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + S D + + + K V++ R + Sbjct: 64 ETGVTSEPCGVCG------VCQSIDSGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 109 NVPYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL L + L + L + +I + +A GSV A+ + Sbjct: 169 CLQFVLRPLPQVALAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSLTDQAIAFGN 228 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ----------DQKIAFDFLIEFI 278 D++I + LI L + Q + L+Q D K FD L E + Sbjct: 229 GNVTDEVIRQMLGLIDQADVIAILANIYQQNTQQLTQSIQLLREQVVDAKAVFDRLAETL 288 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + I ++ L ++++Q+ Q+ L + Q+ + ++ K+RE Sbjct: 289 HQLAILQALPNFDLQINRQQSEQLQQLAQKLPAEL----------LQLYYDIVVKSRENL 338 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 339 ALANTPMQAL 348 >gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] Length = 621 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|116049476|ref|YP_791721.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa UCBPP-PA14] gi|115584697|gb|ABJ10712.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa UCBPP-PA14] Length = 701 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGVSSTPCGEC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L + D + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMPPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L EI Sbjct: 226 AFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEI 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|314935108|ref|ZP_07842467.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae C87] gi|313653038|gb|EFS16801.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae C87] Length = 568 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 23/269 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S + + L E + ++ +F+ + G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISMDQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQD 266 + + + + + A L +D Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNDLFKD 255 >gi|325927129|ref|ZP_08188395.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans 91-118] gi|325542497|gb|EGD13973.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans 91-118] Length = 420 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 133/324 (41%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + E ++ M L + D+ L + + + A E Sbjct: 226 AYAGGALR----EDVVRTM------LGTVDRTQVGAMLQSLADGDGARLLQVVA--ALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|295402712|ref|ZP_06812654.1| DNA polymerase III, subunits gamma and tau [Geobacillus thermoglucosidasius C56-YS93] gi|312109169|ref|YP_003987485.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y4.1MC1] gi|294975243|gb|EFG50879.1| DNA polymerase III, subunits gamma and tau [Geobacillus thermoglucosidasius C56-YS93] gi|311214270|gb|ADP72874.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y4.1MC1] Length = 561 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + D L + + N VDEIR IR Sbjct: 66 HAPTAEPCNEC------PACIGITNGTIPDVLEIDAASNN---------RVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L EQ + D + AA G + A+ +L D Sbjct: 171 QRFDFRRIPLHSIVARLRHVMEQQGMTASDEALFAIARAADGGMRDALSLLDQAISFSDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + +Q + + +D + L E + + Sbjct: 231 ELLLEDVLAMTGSVSSATLASLIQAVYE----KDAATSLRLLEEMMDQ 274 >gi|254973666|ref|ZP_05270138.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-66c26] gi|255091057|ref|ZP_05320535.1| DNA polymerase III subunits gamma and tau [Clostridium difficile CIP 107932] gi|255312711|ref|ZP_05354294.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-76w55] gi|255515471|ref|ZP_05383147.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-97b34] gi|255648563|ref|ZP_05395465.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-37x79] gi|260681785|ref|YP_003213070.1| DNA polymerase III subunits gamma and tau [Clostridium difficile CD196] gi|260685382|ref|YP_003216515.1| DNA polymerase III subunits gamma and tau [Clostridium difficile R20291] gi|306518692|ref|ZP_07405039.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-32g58] gi|260207948|emb|CBA60069.1| DNA polymerase III subunit gamma/tau [Clostridium difficile CD196] gi|260211398|emb|CBE01472.1| DNA polymerase III subunit gamma/tau [Clostridium difficile R20291] Length = 545 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 154/355 (43%), Gaps = 42/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + + G + I K L S + HA LF G +G GK + ++ V Sbjct: 5 LYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C + + D + + + N +VD+IR +R Sbjct: 65 NKINEEPCNEC------EICESVLKDNTMDVVEIDAASNN---------SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + K E I D + + + G++ A+ IL D+ +S Sbjct: 170 QRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSIL----DQCMS 225 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 Y D++ + ++++ +++ ++ QD K + + L EF+L ++ Sbjct: 226 FGESKIDYKDVVELM-GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM--IFHLLSKARE 335 + + E D+I + ++++ N+D + I ++LS ++ Sbjct: 285 IDHFRNLMVCKVSSELDEIISLPEETIEQLK-IQSKNIDINDLIRILNILSITQD 338 >gi|148546837|ref|YP_001266939.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida F1] gi|148510895|gb|ABQ77755.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Pseudomonas putida F1] Length = 692 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|317055948|ref|YP_004104415.1| DNA polymerase III subunits gamma and tau [Ruminococcus albus 7] gi|315448217|gb|ADU21781.1| DNA polymerase III, subunits gamma and tau [Ruminococcus albus 7] Length = 532 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 128/328 (39%), Gaps = 28/328 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + I L G+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPKTFDDVVSQPHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L D + + + N +V++IR +R Sbjct: 65 HGKDGMPCCEC------EICKAADNGSLGDIIEIDAASNA---------SVNDIRELREG 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T ++V +ID V ++ A NALLK++EEPP V FIL + + +TI SRC Sbjct: 110 VMFTPEMCKYKVYIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 FN + ++ L Q + + + + G + A+ +L D Sbjct: 170 QHFDFNRIKTEDIVARLTYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDD 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF-----LIEFILKEICKSAKA 288 I + + I ++Y ++ IAD+ + K + ++ + E+ + + Sbjct: 230 ITIDTVSNASGIAGRDYLFDILESIADKDAAGALKRINELHSMSKDLKVLAGELLEQMRN 289 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFS 316 L+ ++ ++ +KR+ + Sbjct: 290 VMLAATIDNGRELITCLPDEMKRIEDIA 317 >gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio ammonificans HB-1] gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio ammonificans HB-1] Length = 460 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 127/335 (37%), Gaps = 31/335 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R + P ++ G + I K L SGR HA +F G +G+GK T A + Sbjct: 6 IPRKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAYIFAGPRGVGKTTTARIVAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P +++ A D + + + N +D+IR +R Sbjct: 66 NPTDGEPCNSC------PQCLEISKGAHPDVIEVDAATNR---------GIDQIRELRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID + + A NALLK+LEEPP+ +FIL + I TI SRC Sbjct: 111 VHYAPARGKRKVYIIDEFHMLTKEAFNALLKTLEEPPEHAVFILATTEIDKIPPTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + LE++ + + + +A+ G + A +L Sbjct: 171 QKFLFRKVPRELIVETLERICRSEGVEFDREALELIAVASEGCIRDAESLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + + + L ++ + + E+ K G Sbjct: 223 ---QAIALGGGRVDSKVVSEFLGVLTGRELRNLLQTAFKGDKAELRTQVKRLEELGYNPL 279 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 + Q+ L + + + ++ + F LLS+ Sbjct: 280 FV-VKQLLSWLEEELFRTTTFSEEEVNAAFQLLSE 313 >gi|312142719|ref|YP_003994165.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp. 'sapolanicus'] gi|311903370|gb|ADQ13811.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp. 'sapolanicus'] Length = 602 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 132/319 (41%), Gaps = 36/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P L G + + + L + R+ HA LF G +G GK + +A + Sbjct: 6 LYRKYRPEDFTDLIGQDHVVQTLKNALKNDRVAHAYLFAGPRGTGKTSTAKVFAKALNCA 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P P CN ++++S + D + + + N +DEIR +R Sbjct: 66 DPAADLEPCGECNS------CQRISSGSSLDVIEIDAASNR---------GIDEIRELRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + A NALLK+LEEPP V+FIL + +++TI SR Sbjct: 111 KVKFYPGEGQYKVYIIDEVHMLTTGAFNALLKTLEEPPDSVVFILATTEPHKVITTIMSR 170 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F LS ++ L EQ + D + +A G + I +L D+ I Sbjct: 171 CQRFDFTLLSLGDIKMRLKYIAEQEGYEIDAAALDILARSARGGMRDGISLL----DQAI 226 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S + ++IA L ++ +FL+ ++ K + A L QLE Sbjct: 227 SFSDGQL----------AAEEIARMLGRVNKDKLKEFLL-YLSKNQSQKALQL-LDKQLE 274 Query: 297 EADQIAQIYFSLVKRVHAF 315 I + LV Sbjct: 275 AGLGIERFSDELVAYCREL 293 >gi|117920889|ref|YP_870081.1| DNA polymerase III subunits gamma and tau [Shewanella sp. ANA-3] gi|117613221|gb|ABK48675.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. ANA-3] Length = 1040 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 146/349 (41%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 EKGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L+ + ++ + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +++ ++ +++ L+ ++ + D + Q +A+ + +L+ + + Sbjct: 230 GTVMLNQVQSMLGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q + + + ++ Q+ + +L R+ Sbjct: 290 HQITLTQFAPAAAQQSLYSAQIQAFAEQLAP---EQVQLYYQILLTGRK 335 >gi|255304953|ref|ZP_05349127.1| DNA polymerase III subunits gamma and tau [Clostridium difficile ATCC 43255] Length = 545 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 154/355 (43%), Gaps = 42/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + + G + I K L S + HA LF G +G GK + ++ V Sbjct: 5 LYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C + + D + + + N +VD+IR +R Sbjct: 65 NKINEEPCNEC------EICESVLKDNTMDVVEIDAASNN---------SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ K E I D + + + G++ A+ IL D+ +S Sbjct: 170 QRYDFKRVTVKDITLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSIL----DQCMS 225 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 Y D++ + ++++ +++ ++ QD K + + L EF+L ++ Sbjct: 226 FGESKIDYKDVVELM-GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM--IFHLLSKARE 335 + + E D+I + ++++ N+D + I ++LS ++ Sbjct: 285 IDHFRNLMVCKVSSELDEIISLPEETIEQLK-IQSKNIDINDLIRILNILSITQD 338 >gi|256751423|ref|ZP_05492301.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus CCSD1] gi|256749642|gb|EEU62668.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus CCSD1] Length = 518 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 134/329 (40%), Gaps = 35/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I K L ++ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + ++ D L + + N +V+++R +R Sbjct: 65 NNTDGEPCNSC------EICQAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ + + + I GS+ AI +L + Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGMKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +++ + E + + D + ++D + L + + I +L+ Sbjct: 230 LITYEDVCEMLGVANDEV----LFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLT 285 Query: 293 GQLEE-------ADQIAQIYFSLVKRVHA 314 L + +++ +I +S V+ + Sbjct: 286 YILRDMVLYKTGGEELKEILYSDVETIKE 314 >gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium sp. YIT 12067] gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium sp. YIT 12067] Length = 608 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 127/321 (39%), Gaps = 36/321 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + ++ L SG++ HA LF G +G GK ++ A + Sbjct: 6 LYRQWRPQDFDALVGQKAVKTTLKNALASGKIAHAYLFSGPRGTGKTSMARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D + + + N +VD IR +R Sbjct: 66 QGPTAEPCGQCGN------CQRIVQGTSLDVIEIDAASNT---------SVDNIRDLREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ T ++V +ID V ++ A NALLK+LEEPP +FIL + + +TI+SRC Sbjct: 111 VAFTPAESRYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L + I + I A G + A+ +L Sbjct: 171 QRFEFRRVTVDEIAEHLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLLDQCGVMGKR 230 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + + ++ + + + A A L+ LE+ Sbjct: 231 VTVATVREVLGIVGREALHELTEAIGRRQLPQAL-----------------ATLNLLLEQ 273 Query: 298 ADQIAQIYFSLVKRVHAFSMY 318 + Q+ L++ + A +Y Sbjct: 274 GKDVKQVLTELIEYLRALVLY 294 >gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] Length = 520 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 24/290 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P Q+ + D + + + N ++ IR I Sbjct: 67 VNGPTDKPCGVC------PSCTQIENGTPLDVIEIDGASNR---------GIENIRSIIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIRSR Sbjct: 112 NVRISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSR 171 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 C F SL +L K L++ I + + A GSV + IL Y Sbjct: 172 CQQYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTT 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 DK + D+ + +++ D ++S+++K F+F+ + + Sbjct: 232 DKKYITSADVNAVVGGNN-FSFVKEFFDIIMSENKKSYFEFVKKLFEDAV 280 >gi|261417516|ref|YP_003251198.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y412MC61] gi|297528392|ref|YP_003669667.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. C56-T3] gi|319765174|ref|YP_004130675.1| DNA polymerase III subunits gamma and tau [Geobacillus sp. Y412MC52] gi|261373973|gb|ACX76716.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y412MC61] gi|297251644|gb|ADI25090.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. C56-T3] gi|317110040|gb|ADU92532.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. Y412MC52] Length = 559 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 128/324 (39%), Gaps = 41/324 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + D L + + N VDEIR IR Sbjct: 66 QAPAAEPCNEC------PACLGITNGTVPDVLEIDAASNN---------RVDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L+ + + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFRRIPLPAIVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG---Q 294 + + D++L+ +F L FI + I + AA L Sbjct: 227 FSDGKLRL--------------DDVLAMTGAASFAALSSFI-EAIHRKDTAAVLQQLETM 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMY 318 + + ++ L+ +Y Sbjct: 272 MAQGKDPHRLVEDLILYYRDLLLY 295 >gi|254555739|ref|YP_003062156.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum JDM1] gi|254044666|gb|ACT61459.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum JDM1] Length = 565 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 5 LYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCH 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + L+D + + + N V+EIR IR Sbjct: 65 HLVDGEPCNEC------ETCTAITKGQLNDVIEIDAASNN---------GVEEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 110 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRT 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ + + L + + + + AA G + A+ IL Sbjct: 170 QRFDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN 229 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++++Y+ + + AL+ M+QI E +D + LI + Sbjct: 230 TVTLDDALMVTGSVTKQLLANYVSEVTDHDTKPALETMRQILQE--GKDANRFIEDLISY 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + D Q + + K++ A +Y + Sbjct: 288 TRDVLLYQQAPEMVDSVAMGEDD--QQFEAFAKQIDAEVLYQM 328 >gi|168210522|ref|ZP_02636147.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens B str. ATCC 3626] gi|168217757|ref|ZP_02643382.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens NCTC 8239] gi|170711454|gb|EDT23636.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens B str. ATCC 3626] gi|182380192|gb|EDT77671.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens NCTC 8239] Length = 547 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|26990960|ref|NP_746385.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida KT2440] gi|24985983|gb|AAN69849.1|AE016623_11 DNA polymerase III, gamma and tau subunits [Pseudomonas putida KT2440] Length = 691 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|251794180|ref|YP_003008911.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. JDR-2] gi|247541806|gb|ACS98824.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp. JDR-2] Length = 590 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 135/354 (38%), Gaps = 51/354 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P Q + G I + L R+ HA LF G +G GK T A V Sbjct: 6 LYRAWRPQTFQDMVGQRHIIQTLQNAIREDRVSHAYLFNGPRGTGKTTAAKVLAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C+ + + + + D + + + N +DEIR IR Sbjct: 66 RGPAEEPCNECDA------CRGITAGHIMDVIEIDAASNR---------GIDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VRYAPSEVRYKVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S L++ I + ++ + G + AI +L Sbjct: 171 QRFDFRQVSLEEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGS 230 Query: 231 --------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQ--KIAFDFL 274 D+ + + I + ++ + S D+ + + Sbjct: 231 RITLDGAVDVTGGMAADQFYA-LAEAIRDRNVAAIMPLVEGLTQAGKSADKCMENLIFYF 289 Query: 275 IEFILKEICKSAKAAALSGQLEEADQI---AQIY--FSLVKRVHAFSMYNLDRR 323 + + + K A A++ ++ +A++ A + L K + + Y D + Sbjct: 290 RDLL---VLKLAPQGAVTERVVDAERFRGMADAFSSERLFKMIDTLNTYQSDMK 340 >gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile 630] gi|255099173|ref|ZP_05328150.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-63q42] gi|255654098|ref|ZP_05399507.1| DNA polymerase III subunits gamma and tau [Clostridium difficile QCD-23m63] gi|296452477|ref|ZP_06894176.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP08] gi|296878245|ref|ZP_06902255.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP07] gi|115249019|emb|CAJ66830.1| DNA polymerase III subunits gamma and tau [Clostridium difficile] gi|296258683|gb|EFH05579.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP08] gi|296430753|gb|EFH16590.1| DNA polymerase III subunits gamma and tau [Clostridium difficile NAP07] Length = 545 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 154/355 (43%), Gaps = 42/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + + G + I K L S + HA LF G +G GK + ++ V Sbjct: 5 LYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C + + D + + + N +VD+IR +R Sbjct: 65 NKINEEPCNEC------EICESVLKDNTMDVVEIDAASNN---------SVDDIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V +++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 110 VKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRC 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + K E I D + + + G++ A+ IL D+ +S Sbjct: 170 QRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSIL----DQCMS 225 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK---------EI 282 Y D++ + ++++ +++ ++ QD K + + L EF+L ++ Sbjct: 226 FGESKIDYKDVVELM-GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM--IFHLLSKARE 335 + + E D+I + ++++ N+D + I ++LS ++ Sbjct: 285 IDHFRNLMVCKVSSELDEIISLPEETIEQLK-IQSKNIDINDLIRILNILSITQD 338 >gi|218887359|ref|YP_002436680.1| DNA polymerase III subunits gamma/tau [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758313|gb|ACL09212.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 688 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 124/312 (39%), Gaps = 29/312 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E ++ LS+ R+ A LF G +G+GK T+ A + Sbjct: 9 RYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAKALNCEKAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C +++ D + + + N +++ RR+R + Sbjct: 69 TGEPCNTCEQ------CRKVVMGNHVDVVEIDGASNR---------GIEDARRLREAIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G ++V +ID + R A NALLK+LEEPP +V F+L + TI SRC Sbjct: 114 APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHF 173 Query: 185 KFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKI- 235 F L EN L L + + + A GSV ++ + L D++ Sbjct: 174 TFKRLPENELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAKAAA 290 + ++ + QE + MQ +A + + D L I F L+E+ + + Sbjct: 234 VEGARGVLGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLF 293 Query: 291 LSGQLEEADQIA 302 + Q EA A Sbjct: 294 MLRQAGEAALPA 305 >gi|313497891|gb|ADR59257.1| DnaX [Pseudomonas putida BIRD-1] Length = 689 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ + LL D + + + +L E+ Sbjct: 226 AFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEM 285 Query: 283 CKSAKAAALSGQLEEA 298 A++ L EA Sbjct: 286 LNVLHRVAIAQALPEA 301 >gi|237749102|ref|ZP_04579582.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] gi|229380464|gb|EEO30555.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13] Length = 604 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 74/337 (21%), Positives = 133/337 (39%), Gaps = 30/337 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + LS S R+HHA LF G +GIGK TL A + Sbjct: 5 VLARKYRPKNFENIVGQDHVVRALSHALESQRLHHAYLFTGTRGIGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C K + S D++ + + N + ++ ++ Sbjct: 65 EKGITASPCGIC------EACKAIDSDRFVDYVEMDAASNR---------GIADMLQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 QAVYAPTAARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + +++ L ++ I + A GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPVSHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTA 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + D++ Q Y + ++ D L ++D E + + S L Sbjct: 230 GHVTDEAVQDMLGALDQTYLI----RLLDHLANRDGTSLLKVADEMAFRSLSYSTALQDL 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 L++ I + + + NL R IF Sbjct: 286 GLLLQKIAMIQSVPDYPLDDIADSD--NLSRLAAIFS 320 >gi|326566454|gb|EGE16604.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC1] Length = 748 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 154/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + AA GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] gi|149128882|gb|EDM20099.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] Length = 618 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L+ A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLANKVSDALLLFNDVLNK 276 >gi|110799164|ref|YP_694518.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens ATCC 13124] gi|110673811|gb|ABG82798.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens ATCC 13124] Length = 547 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|331003026|ref|ZP_08326538.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413070|gb|EGG92445.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon 107 str. F0167] Length = 516 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E I + L +GR+ HA LF G +G GK ++ A + Sbjct: 6 LYRKFRPSNFDEVIGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P K + S + + + + N VD IR I+ Sbjct: 66 HPTDAGPCNEC------PTCKSILSETSINVVEIDAASNN---------GVDNIRDIKEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 111 VQYPPTFGKYKVFIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + + L+ L + D ++ A G++ A+ +L D+ IS Sbjct: 171 QRYDFKRIGIDTITQRLKTLCNSEGVDIEDRALYYIAKTADGAMRDALSLL----DECIS 226 Query: 238 SY------IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D + + ++ D +LS + + L I++ Sbjct: 227 FLQNEKISYDAVLDILGASDISVFNELLDGVLSGNTIEVLNLLNNSIIE 275 >gi|223043407|ref|ZP_03613453.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14] gi|222443196|gb|EEE49295.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14] Length = 568 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 23/269 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K L G+ HA +F G +G GK ++ +A + Sbjct: 6 LYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VDEIR IR Sbjct: 66 NSDDGEPCNEC------AICKGITQGTNSDVIEIDAASNN---------GVDEIRNIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SR Sbjct: 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRA 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++S N + L E + ++ +F+ + G + A+ I+ D+ I+ Sbjct: 171 QRFDFKAISMNQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIM----DQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQD 266 + + + + + A L +D Sbjct: 227 FGDERLTLQDALNVTGSVDEAALNDLFKD 255 >gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii FI9785] gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii FI9785] Length = 602 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 26/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 K+ Y D + I A +K++Q+ LL+ + A + + + Sbjct: 231 KV--KYEDALRITGYA-AQEKIEQVLLNLLNGETSAALEIVHALLQD 274 >gi|169335258|ref|ZP_02862451.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM 17244] gi|169257996|gb|EDS71962.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM 17244] Length = 645 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 111/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + + G ++I L + + HA LF G +G GK + +A + Sbjct: 5 VLYREFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAKSICC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + C + D + + + N +DEIR ++ Sbjct: 65 LNNKEGEACNECAS------CNDINIGDGADIVEIDAASNR---------GIDEIRDLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ N G ++V +ID V + A NALLK+LEEPP ++FI + IL TI SR Sbjct: 110 KVNYMPNFGRYKVYIIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH------Y 230 C FN + + L + +I + + + G++ A+ +L Sbjct: 170 CQRFDFNRIDSEVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAISVVK 229 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D + D++ + E + I + + + DFL Sbjct: 230 DNKITKETADDILGLISDEEIFLLAKGILENDVDKSLNAVHDFL 273 >gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae ACS-120-V-Col10a] gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae ACS-120-V-Col10a] Length = 641 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 74/362 (20%), Positives = 134/362 (37%), Gaps = 52/362 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + HA LF G +G GK + +A + Sbjct: 16 LYRKWRPQIFADIVGQEAVSRTLKNAINQDKTSHAYLFNGPRGTGKTSAAKIFAKAINCP 75 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + L D + + + N V+EIR IR Sbjct: 76 NQNDGEPCNECH------LCQAITEGRLADVIEIDAASNN---------GVEEIRDIRDK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP +V+FIL + + I +T+ SR Sbjct: 121 VRYAPTEANYKVYIIDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRT 180 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F LS + + Q + + + A G + A+ +L Sbjct: 181 QRFDFKRLSNQAIKDRMAYILGQEGVTYEAEALELIAQDANGGMRDALSLLDQVISFSQG 240 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 D+ +Y++ + + AL ++QI ++ + ++ F Sbjct: 241 EITTAMTRQVTGILSDEQKIAYVEALGQGDTDQALAVLRQILQA--GREASRFVEEMLLF 298 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + A L Q ++ L K NLDR +I+ ++ + R Sbjct: 299 TRDLLLAKQSQGAKDTDL--MKNYDQSFYDLAK--------NLDR-DLIYQMMKEFRSVQ 347 Query: 338 DL 339 + Sbjct: 348 ED 349 >gi|326576888|gb|EGE26794.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis O35E] Length = 748 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 154/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + AA GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|225023623|ref|ZP_03712815.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC 23834] gi|224943505|gb|EEG24714.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC 23834] Length = 754 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 28/291 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALGKGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + D L + + N +D IR + Sbjct: 65 ETPHEGEPCGQCQS------CRDIDAGRFVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ + + L +I + AA GS+ A+ +L D+ I Sbjct: 170 CLQFVLRNMTAQQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 + + + + Q + +QD + E + I Sbjct: 226 AMGSGSVTEADVRQMIGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAI 276 >gi|212634550|ref|YP_002311075.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] gi|212556034|gb|ACJ28488.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3] Length = 946 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 139/340 (40%), Gaps = 35/340 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPAKFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGQCSA------CVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQDEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + ++ +L + L+E + K A +G L Sbjct: 226 AFGAGQVKL-----------ELVQTMLGSIDEKQVIALLEALAKADV-MALMQVSAGVLS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + ++ SL++ +H ++ L S+ + Sbjct: 274 FGAEPEEVLRSLLELLHQITLTQFAPAAAQMSLYSEQIKA 313 >gi|325919111|ref|ZP_08181170.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC 19865] gi|325550420|gb|EGD21215.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC 19865] Length = 689 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFSELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRIQVQQL 297 >gi|300769760|ref|ZP_07079642.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492668|gb|EFK27854.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 569 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 5 LYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCH 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + L+D + + + N V+EIR IR Sbjct: 65 HLVDGEPCNEC------ETCTAITKGQLNDVIEIDAASNN---------GVEEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 110 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRT 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ + + L + + + + AA G + A+ IL Sbjct: 170 QRFDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN 229 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++++Y+ + + AL+ M+QI E +D + LI + Sbjct: 230 TVTLDDALMVTGSVTKQLLANYVSEVTDHDTKPALETMRQILQE--GKDANRFIEDLISY 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + D Q + + K++ A +Y + Sbjct: 288 TRDVLLYQQAPEMVDSVAMGEDD--QQFEAFAKQIDAEVLYQM 328 >gi|169343396|ref|ZP_02864400.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens C str. JGS1495] gi|169298482|gb|EDS80568.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens C str. JGS1495] Length = 547 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S+ ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISKKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIENAMEIIEELVLT 274 >gi|28377566|ref|NP_784458.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum WCFS1] gi|28270398|emb|CAD63301.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus plantarum WCFS1] Length = 565 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 5 LYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCH 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + L+D + + + N V+EIR IR Sbjct: 65 HLVDGEPCNEC------ETCTAITKGQLNDVIEIDAASNN---------GVEEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 110 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRT 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ + + L + + + + AA G + A+ IL Sbjct: 170 QRFDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN 229 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++++Y+ + + AL+ M+QI E +D + LI + Sbjct: 230 TVTLDDALMVTGSVTKQLLANYVSEVTDHDTKPALETMRQILQE--GKDANRFIEDLISY 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + D Q + + K++ A +Y + Sbjct: 288 TRDVLLYQQAPEMVDSVAMGEDD--QQFEAFAKQIDAEVLYQM 328 >gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC 43541] gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC 43541] Length = 644 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 37/322 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS+ SG+ HA LF G +G GK + A + Sbjct: 39 LYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNCA 98 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C + ++ + D + + N +DEIR +R Sbjct: 99 EGPTLTPCGVCES------CRSISDGSSMDVFEIDAASNR---------GIDEIRDLRES 143 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC Sbjct: 144 VKFAPTAGRYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRC 203 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + L + I + + + A G + A+ IL D+ + Sbjct: 204 QRYDFHRITVTEIRDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSIL----DQCTA 259 Query: 238 SYIDLIHIPRQEYALQKM-QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + R + AL + +++ Q + + A A L L+ Sbjct: 260 LAEGQLTTERVQEALGLVGHAWIEKMAMQ-------------IADCDAPALIAQLGELLQ 306 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 ++ QI L + + + Sbjct: 307 NGRELKQILGELAQYFRSLMIV 328 >gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 602 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 26/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 K+ Y D + I A +K++Q+ LL+ + A + + + Sbjct: 231 KV--KYEDALRITGYA-AQEKIEQVLLNLLNGETSAALEIVHALLQD 274 >gi|162448237|ref|YP_001621369.1| DNA polymerase III subunits gamma and tau [Acholeplasma laidlawii PG-8A] gi|161986344|gb|ABX81993.1| DNA polymerase III, gamma and tau subunit [Acholeplasma laidlawii PG-8A] Length = 564 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 30/302 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + +FG + I + L + ++ HA +F G +G GK ++ A + Sbjct: 6 LYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +K P C+ + + D + + + N VDEIR +R Sbjct: 66 EAPAKEPCGKCD------VCLGVDRGDVPDIIEIDAASNN---------GVDEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC Sbjct: 111 VKYAPSIGKYKVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + + L+Q+ + + A G + A+ +L D+++S Sbjct: 171 QRFDFKNIEMDQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLL----DQVVS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI--LKEICKSAKAAA 290 D I + + + ++ + + + A D L + I K+I + Sbjct: 227 FTNDEITEEDIYTVSGGLSRRYINELLKVIYLKQPQKALDLLNQIIKDGKDIARMVSDII 286 Query: 291 LS 292 L+ Sbjct: 287 LA 288 >gi|146307669|ref|YP_001188134.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina ymp] gi|145575870|gb|ABP85402.1| DNA polymerase III, subunits gamma and tau [Pseudomonas mendocina ymp] Length = 692 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 37/330 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C +++ D + + + K V++ R + Sbjct: 65 ETGISSTPCGTC------SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYSPSRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL ++ + + L + D + AA GS+ A+ + + Sbjct: 170 CLQFSLKNMPPERVVEHLSHVLTAENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGE 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQI----ADELLS-----QDQKIAFDFLIEFILKEI 282 + + ++ + + A L+ +Q ++ ++ +L + Sbjct: 230 GKVLAADVRAMLGTLDHGQVYGVLHALFEGDARALIEAVRHLAEQGPDWNGVLAEMLNVL 289 Query: 283 CKSAKAAALSGQLEEA----DQIAQIYFSL 308 + A A AL ++ +++ Q+ +L Sbjct: 290 HRVAIAQALPDAVDNGQGDRERVLQLAQAL 319 >gi|110803673|ref|YP_697397.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens SM101] gi|110684174|gb|ABG87544.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens SM101] Length = 547 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|167761782|ref|ZP_02433909.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC 43183] gi|167700288|gb|EDS16867.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC 43183] Length = 607 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTAEGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 S I+ +++ EY ++ D L A L + + K Sbjct: 231 GGHITYQSVIENLNVLDYEYYF----KLTDHFLENKVGDALLLLNDVLSK 276 >gi|294627932|ref|ZP_06706511.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597846|gb|EFF42004.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 689 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|297205020|ref|ZP_06922416.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii JV-V16] gi|297149598|gb|EFH29895.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii JV-V16] Length = 593 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K S A+ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CKAADSGAMPDIIEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ NL LEQ I + + A G + ++ IL D+++S Sbjct: 171 QRYNFKRISKQNLVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D ++I A + +Q+ LL+Q + + + + Sbjct: 227 FEKEKVEYKDALNITGYA-AREATEQLFLNLLNQKVSESLELSHKLLQD 274 >gi|283834204|ref|ZP_06353945.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220] gi|291070357|gb|EFE08466.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220] Length = 641 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILKEEHIAHEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S D + + + + +++ D + + + + I A + Sbjct: 226 ASGDGQVSTDAVSTMLGTLDDDQALSLVEAVVAADGERVMTLVNDAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFS 316 S L + + +L + A Sbjct: 286 SALLHRIAMVQLLPAALGSDMAAVE 310 >gi|302384618|ref|YP_003820440.1| DNA polymerase III, subunits gamma and tau [Clostridium saccharolyticum WM1] gi|302195246|gb|ADL02817.1| DNA polymerase III, subunits gamma and tau [Clostridium saccharolyticum WM1] Length = 531 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 25/256 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L +GR+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPPSFSDVKGQDHIVQTLKNQIVAGRIGHAYLFCGTRGTGKTSIAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ A + + + + N V+ IR IR Sbjct: 66 CPEDGSPCGECRT------CKNIAAGASLNVVEIDAASNN---------GVENIREIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I T+ SRC Sbjct: 111 VQYPPTEGKYRVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F ++ + + L++L I D ++ +A G++ A+ +L HY Sbjct: 171 QRYDFKRITVETIVEHLKELTAAEHIQVEDRALTYIAKSADGALRDALSLLDQCIAFHYG 230 Query: 232 CDKIISSYIDLIHIPR 247 + +D++ Sbjct: 231 ELLTYDNVLDVLGAVD 246 >gi|260173527|ref|ZP_05759939.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|315921797|ref|ZP_07918037.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|313695672|gb|EFS32507.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] Length = 621 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|91793733|ref|YP_563384.1| DNA polymerase III, subunits gamma and tau [Shewanella denitrificans OS217] gi|91715735|gb|ABE55661.1| DNA polymerase III, subunits gamma and tau [Shewanella denitrificans OS217] Length = 921 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 147/349 (42%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPAKFEQMVGQSHVLLALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ ++A D + + + K VD+ R + Sbjct: 65 ETGVTASPCGTCSS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPARGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL SLS++ + + LE Q ++ + AA GS+ A+ + + + Sbjct: 170 CLQFNLKSLSQDEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAFGS 229 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSA 286 +++ + ++ + + ++ + D ++ + L + +L+ + + Sbjct: 230 GQVMLTQVQTMLGSIDERQVIGLLKSLCDADIAHLMQTTAQVLSFGADADEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 LS A Q + ++ ++ Q+ + +L R+ Sbjct: 290 HQITLSQFAPAAAQHSLYSEQILAFAKQLKP---EQVQLYYQILLTGRK 335 >gi|307249479|ref|ZP_07531467.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858472|gb|EFM90540.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 466 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|168700663|ref|ZP_02732940.1| DNA polymerase III gamma and tau subunits [Gemmata obscuriglobus UQM 2246] Length = 614 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 40/319 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L SGR+ HA LF G +G+GK + A + Sbjct: 19 VVARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKALNC 78 Query: 61 --NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + P C+ + + + D L + + N K V+E+R + Sbjct: 79 LKTDKATPTPCDECDS------CRAVMTGDDVDVLEIDGASNNK---------VEEVRDL 123 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +++ +ID V ++ +A NALLK+LEEPP+ V FIL + I TI Sbjct: 124 RQNVGFRPARGRYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITIL 183 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + +++ L E+ D V A GS+ + +L D+ Sbjct: 184 SRCQRFDFAHVGPGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLL----DQ 239 Query: 235 IISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 +++S + + L ++ ++A +L+ D K A D + E++ + + Sbjct: 240 LLASSSGTLTAGQVTAVLGTAGDDRVIELAKAILANDPKTALDRIAEWVERGL------- 292 Query: 290 ALSGQLEEADQIAQIYFSL 308 E DQ+ + + +L Sbjct: 293 ---QIGELIDQVVEYWRAL 308 >gi|308179718|ref|YP_003923846.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045209|gb|ADN97752.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum subsp. plantarum ST-III] Length = 565 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + + HA LF G +G GK + +A + + Sbjct: 5 LYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCH 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + L+D + + + N V+EIR IR Sbjct: 65 HLVDGEPCNEC------ETCTAITKGQLNDVIEIDAASNN---------GVEEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 110 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRT 169 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F ++ + + L + + + + AA G + A+ IL Sbjct: 170 QRFDFRRITAKDSYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN 229 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++++Y+ + + AL+ M+QI E +D + LI + Sbjct: 230 TVTLDDALMVTGSVTKQLLANYVSEVTDHDTKPALETMRQILQE--GKDANRFIEDLISY 287 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + D Q + + K++ A +Y + Sbjct: 288 TRDVLLYQQAPEMVDSVAMGEDD--QQFEAFAKQIDAEVLYQM 328 >gi|152993623|ref|YP_001359344.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1] gi|151425484|dbj|BAF72987.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1] Length = 666 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 144/355 (40%), Gaps = 37/355 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + LS R+ HA LF G +G GK + +A +L Sbjct: 5 LARKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C A + D + + + N +D+I+ + Sbjct: 65 QGTTSHPCGTCTH------CVMAAENRHMDIIEMDAASNR---------GIDDIKDLIEH 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +++ +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 TKYKPSSARYKIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII- 236 +F + +N + LE + KI + + + GS+ ++ +L D+ I Sbjct: 170 QHFRFKKIPQNLVLSHLEHIMNLEKIEYEKEALEIIARSGAGSLRDSLTLL----DQAIV 225 Query: 237 --SSYIDLIHIPRQEYALQ--KMQQIADELLSQDQKIAFDFL-------IEFILKEICKS 285 +++D+ + ++ ++ + ++ +D +F+ E IL E+ Sbjct: 226 YSKNFVDVGTVTGMLGIIEPSLLEALLGNIVKKDTTKILEFIKLASDYEAEMILDELTLY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL-LSKARECNDL 339 K L+G + I + +F ++ + D + + L L K E ++ Sbjct: 286 LKELLLTGSGKLNPMIIERFFRVIAESKSLLALGSD-GEFVLSLALFKMMEALEI 339 >gi|56418552|ref|YP_145870.1| DNA polymerase III subunits gamma and tau [Geobacillus kaustophilus HTA426] gi|56378394|dbj|BAD74302.1| DNA-directed DNA polymerase III gamma and tau subunits [Geobacillus kaustophilus HTA426] Length = 559 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 128/324 (39%), Gaps = 41/324 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + D L + + N VDEIR IR Sbjct: 66 QAPAAEPCNEC------PACLGITNGTVPDVLEIDAASNN---------RVDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L+ + + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFRRIPLPAIVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG---Q 294 + + D++L+ +F L FI + I + AA L Sbjct: 227 FSDGKLRL--------------DDVLAMTGAASFAALSSFI-EAIHRKDTAAVLQQLETM 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMY 318 + + ++ L+ +Y Sbjct: 272 MAQGKDPHRLVEDLILYYRDLLLY 295 >gi|71900519|ref|ZP_00682648.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71729695|gb|EAO31797.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 541 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + D L + + N VD++R + Sbjct: 65 EQGTSADPCGRCTA------CLDIDVGRYIDLLEIDAASNT---------GVDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + + + ++ +I D+ + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + D L + D+ L I + + + A E Sbjct: 226 AYAGGTLRE----------GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIA--TLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +L + +H + L Sbjct: 274 FSPDWGGVLEALAEALHRIQVQQL 297 >gi|256852105|ref|ZP_05557492.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN] gi|260661325|ref|ZP_05862238.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN] gi|282934786|ref|ZP_06340024.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] gi|256615517|gb|EEU20707.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN] gi|260547780|gb|EEX23757.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN] gi|281301149|gb|EFA93455.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii 208-1] Length = 593 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K S A+ D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CKAADSGAMPDIIEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ NL LEQ I + + A G + ++ IL D+++S Sbjct: 171 QRYNFKRISKQNLVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSIL----DQLLS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D ++I A + +Q+ LL+Q + + + + Sbjct: 227 FEKEKVEYKDALNITGYA-AREATEQLFLNLLNQKVSESLELSHKLLQD 274 >gi|325918000|ref|ZP_08180164.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC 35937] gi|325535764|gb|EGD07596.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC 35937] Length = 399 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 132/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALTNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILTAEDIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + E ++ M L + D+ L + + + A E Sbjct: 226 AYAGGALR----EDVVRTM------LGTVDRTQVGAMLQSLADGDGARLLQVVA--ALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|165975723|ref|YP_001651316.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307245079|ref|ZP_07527172.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254034|ref|ZP_07535881.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|165875824|gb|ABY68872.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306853968|gb|EFM86180.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862959|gb|EFM94906.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 688 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 142/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|291278574|ref|YP_003495409.1| DNA polymerase III gamma/tau subunits [Deferribacter desulfuricans SSM1] gi|290753276|dbj|BAI79653.1| DNA polymerase III, gamma/tau subunits [Deferribacter desulfuricans SSM1] Length = 526 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 28/290 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + I K L R+ HA LF G +GIGK + +A + Sbjct: 6 LARKYRPQSFDEIVYQDYIVKTLKNAIELNRISHAYLFTGPRGIGKTSTARIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ + D + + N +DEIR++R Sbjct: 66 SPEGVNPCNKCEN------CVEVTNGTSLDVYEIDGASNR---------GIDEIRQLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID V + A NALLK+LEEPP V+FI + + I +TI SRC Sbjct: 111 VKFLPTKSKYKIYIIDEVHMLTEAAFNALLKTLEEPPSYVIFIFATTDAHRIPATILSRC 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ + + ++ LE+ I + + + + G V + ++ D++I+ Sbjct: 171 QRFNFSKIPDLKLIEHIRSILERENIEYEEDAVNLIVRNSDGCVRDCLSLI----DQVIA 226 Query: 238 SYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEI 282 + + +Y L + ++ ++++ +D L E LK + Sbjct: 227 YTGGKVFLDDTKYLLGLSEDKIINELFEKIILKDNDSIKQLLSEIDLKGL 276 >gi|237712928|ref|ZP_04543409.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|294666543|ref|ZP_06731784.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603687|gb|EFF47097.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 689 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|188992754|ref|YP_001904764.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. B100] gi|167734514|emb|CAP52724.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris] Length = 752 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 104 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 163 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 164 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 208 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 209 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 268 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 269 CLQFNLKRLDEDQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 324 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + E ++ M D L + ++ K A A E Sbjct: 325 AYAGGALR----EDVVRTMLGTVDR---TQVGAMLQALSDGDGAQLLKVVAALA-----E 372 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 373 FSPDWSGVLEALAEALHRIQVQQL 396 >gi|116750215|ref|YP_846902.1| DNA polymerase III subunits gamma and tau [Syntrophobacter fumaroxidans MPOB] gi|116699279|gb|ABK18467.1| DNA polymerase III, subunits gamma and tau [Syntrophobacter fumaroxidans MPOB] Length = 602 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 115/291 (39%), Gaps = 28/291 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + + G + + L S R+ H+ LF G +G+GK ++ A + Sbjct: 5 VIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ ++ D L + + N +D +R +R Sbjct: 65 ETGVTPTPCNVCSN------CTEIRQGNAVDVLEIDGASNR---------GIDSVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V + A NALLK+LEEPP+ V+FI + I +TI SR Sbjct: 110 TVRYRPAKSRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L L + + + A GS+ A +L ++++ Sbjct: 170 CQRFDFRRIPSHMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLL----EQML 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEI 282 S D + L + + + +L D + D + + + + Sbjct: 226 SFSRDGLSDEEVLDVLGVIDRRSIHRTGTAVLEGDVRTCLDVVEDIYRRGM 276 >gi|168206163|ref|ZP_02632168.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens E str. JGS1987] gi|170662345|gb|EDT15028.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens E str. JGS1987] Length = 547 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|24373576|ref|NP_717619.1| DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] gi|24347898|gb|AAN55063.1|AE015643_10 DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] Length = 1002 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 145/349 (41%), Gaps = 32/349 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P +C ++A D + + + K VD+ R + Sbjct: 65 ETGVTASPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L+ + ++ + +A GS+ A+ + Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +++ ++ +++ L ++ + D + Q +A+ + +L+ + + Sbjct: 230 GTVMLNQVQSMLGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L+ A Q + + + ++ Q+ + +L R+ Sbjct: 290 HQITLTQFAPAAAQQSLYSAQIQAFAEQLAP---EQVQLYYQILLTGRK 335 >gi|147674747|ref|YP_001216522.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O395] gi|146316630|gb|ABQ21169.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O395] gi|227012870|gb|ACP09080.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae O395] Length = 692 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 33/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK T+G +A + Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + C +++ D L + + K V++ R + Sbjct: 66 TGITATSCGQC------ATCQEIDQGRFVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD---- 233 L +S N+ + L++ +I + + AA GS+ A+ + Sbjct: 171 LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNG 230 Query: 234 ----KIISSYIDLIHIPR-----QEYALQKMQQIADELLS-QDQKIAFDFLIEFILKEIC 283 I++ + + Q +LQ Q + D + + + +D L++ + ++ Sbjct: 231 VVKSDIVARMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAPNGVEWDGLLQQLSTQLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A AL L+++ A SL K + Sbjct: 291 RIAMYQALPATLDKSLPEASRIESLAKTLA 320 >gi|182625401|ref|ZP_02953174.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D str. JGS1721] gi|177909398|gb|EDT71850.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D str. JGS1721] Length = 547 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDNIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|170718500|ref|YP_001783712.1| DNA polymerase III subunits gamma/tau [Haemophilus somnus 2336] gi|168826629|gb|ACA32000.1| DNA polymerase III, subunits gamma and tau [Haemophilus somnus 2336] Length = 667 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 145/355 (40%), Gaps = 41/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS C R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSEVVGQEHILTALSNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 IRGVTAEPCGEC------EHCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +LSE + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALSEKQIAQHLEFILQQENIPFEYPALEKLATAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + L + D D L + L++ A+ E Sbjct: 226 AMGNANVSLDTVSIMLGLL----------DDNQPIDIL--YALQQGNGEMLMKAIQAVAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI----FHLLSKARECNDLYFRDFYAI 347 + ++ +L +++H +M L +Q+ L+K D+ F FY + Sbjct: 274 KGADWDKLLVTLAEKLHQIAMLQLLPQQINEENSLGFLAKHITPEDVQF--FYQV 326 >gi|50120115|ref|YP_049282.1| DNA polymerase III subunits gamma and tau [Pectobacterium atrosepticum SCRI1043] gi|49610641|emb|CAG74086.1| DNA polymerase III subunit tau [Pectobacterium atrosepticum SCRI1043] Length = 691 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 128/333 (38%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LEQ + + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRAHLEQVLQAENLASEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +S ++ E L ++ +A Q DQ A E +L E Sbjct: 230 GQVTTASVSQMLGTLDDEQPLALIEALAKGDGGQVMSLLDQVAARGVDWESLLVETQTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D A + + + A Sbjct: 290 HRIAMVQLLPAALGDDYAAVEARIRELARALPP 322 >gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A] Length = 621 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|18309027|ref|NP_560961.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens str. 13] gi|168213992|ref|ZP_02639617.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens CPE str. F4969] gi|18143702|dbj|BAB79751.1| DNA polymerase III gamma and tau subunits [Clostridium perfringens str. 13] gi|170714512|gb|EDT26694.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens CPE str. F4969] Length = 547 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R HA LF G +G GK + A + Sbjct: 6 LYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N VD+IR I Sbjct: 66 DLKDGEPCNQC------EMCKKINEGLAIDITELDAASNN---------GVDKIRDIIDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 VQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++ L ++ I D D V + G++ ++ IL D Sbjct: 171 QRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ + + + +I D ++ +D + A + + E +L Sbjct: 231 KVDYDELVSMLGLVTND----NLFKIVDSIIKRDIESAMEIIEELVLT 274 >gi|256004179|ref|ZP_05429163.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281419179|ref|ZP_06250196.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|255991927|gb|EEU02025.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281407328|gb|EFB37589.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|316941749|gb|ADU75783.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 1313] Length = 547 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + E + + L CSGR+ HA LF G +G GK T+ ++ V Sbjct: 6 LYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N +VD+IR +R Sbjct: 66 NPKDGDPCNQC------EICQGILNGSLLDVIEIDAASNN---------SVDDIRVLRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +++ K +E + + + + G++ AI IL D+ IS Sbjct: 171 QRFDFRRIPVDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISIL----DQCIS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D++ + + ++ D + +++ + + E +++ Sbjct: 227 LGSKELTYEDVLSVVGLVTD-TFIAEVVDAIKNKEVGRVLNAVDELVME 274 >gi|225387325|ref|ZP_03757089.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme DSM 15981] gi|225046574|gb|EEG56820.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme DSM 15981] Length = 566 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 32/329 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I + L SGR+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPASFEDVKGQDPIVQTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C P + + S + + + + + N V+ IR IR Sbjct: 66 NPVNGSPCNEC------PACRAIISGSSMNVVEIDAASNN---------GVENIRDIRDQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYPPTDGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F ++ + L +L I D +V AA GS+ A+ +L HY Sbjct: 171 QRYDFKRIALETIAGHLRELTRAEHIEVEDRALTYVAKAADGSLRDALSLLDQCVAFHYG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADE------LLSQDQKIAFDFLIEFILKEICKS 285 + ++++ + I + L ++ I L +F+ I Sbjct: 231 KLLTYDNVLEVLGAVDASVFSELFGAIVEGRTRDCILKLEEIVIQGRELGQFVTDFIWYM 290 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + L ++A+ + + +K++ Sbjct: 291 -RNLLLFQSADDAEGLLDMSTENLKQLEE 318 >gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena ATCC 35185] gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena ATCC 35185] Length = 664 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 24/282 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + L G + + LS +GR+ HA LF G +G GK + A + Sbjct: 6 LYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C ++A D + + N +DE+R +R Sbjct: 66 KGPTPEPCGVCKN------CTKIADGTALDVFEIDAASNR---------GIDEMRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V + A NALLK+LEEPP V+FIL + + +TI+SRC Sbjct: 111 VKFTPAEGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F ++ + L +++KI + A G + A+ +L D D Sbjct: 171 QRFDFRRITVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGD 230 Query: 234 KIISSYIDL-IHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + ++ ++ + + E + + I + + + + L Sbjct: 231 TLTAACVEENLGLIGHEPIYRLTKAIGERAKGEVLETIAELL 272 >gi|85058667|ref|YP_454369.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius str. 'morsitans'] gi|84779187|dbj|BAE73964.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius str. 'morsitans'] Length = 734 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 141/353 (39%), Gaps = 37/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLLSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIKQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + L+Q +I+ + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDVEQIRNQLSSVLQQEQIVTEPRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYIDL-IHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEI 282 ++ + + L + E L ++ +A+ + + ++ L+ +L + Sbjct: 230 GEVSAEAVSLMLGTLNTEQPLALIEALANADGGAMMAQLAQCAARGMDWESLLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A + QL D A + L +L Q+ + +L R+ Sbjct: 290 HRLALCQLVPDQLNNEDDPASV-ARLRDLARRLPPADL---QLYYQILLIGRK 338 >gi|167038580|ref|YP_001666158.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116975|ref|YP_004187134.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857414|gb|ABY95822.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930066|gb|ADV80751.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 518 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 124/305 (40%), Gaps = 28/305 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I + L ++ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + ++ D L + + N +V+++R +R Sbjct: 65 NNKDGEPCNSC------EICQAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + L+++ I + + I GS+ AI +L + Sbjct: 170 QRFDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +++ + E + + D + ++D + L + + I +L+ Sbjct: 230 LITYEDVCEMLGVANDEM----LFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLT 285 Query: 293 GQLEE 297 L + Sbjct: 286 YILRD 290 >gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] Length = 621 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|145588885|ref|YP_001155482.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047291|gb|ABP33918.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 553 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 33/329 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P L G + + K L+ GR+HHA LF G +G+GK T+ A + Sbjct: 6 LARSWRPKTFSELVGQDHVVKALTHALDQGRLHHAWLFTGTRGVGKTTIARIMAKALNCT 65 Query: 62 P-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P C P ++ + D++ + + N VD+I Sbjct: 66 GADGSGKMTSEPCGKC------PACMEIDAGRFVDYIEMDAASNR---------GVDDIA 110 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + + G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T Sbjct: 111 ALLEKAAYAPSNGRYKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 Query: 177 IRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 I SRCL + + + LE+ K+ + + AA GS+ A+ + Sbjct: 171 ILSRCLQFNLKQMPVPLIVEHLEKVLAAEKVEYEVNALRVLAKAAQGSMRDALSL----T 226 Query: 233 DKIISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAK 287 D+ I+ + L + +I D L+++D E + + S Sbjct: 227 DQAIAYAAGKVSEESVRGMLGTLDDAYLIRILDCLIAKDGASLLSVANEMGERSMSFSLA 286 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFS 316 LS L++ + S+++ S Sbjct: 287 LQDLSSLLQKIAAAQVVPESVLEDWPEAS 315 >gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] Length = 621 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] gi|156108224|gb|EDO09969.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] Length = 621 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIDNLNVLDYEYYF----RLTDCFLENKVSDALLLFNDILNK 276 >gi|255690089|ref|ZP_05413764.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii DSM 17565] gi|260624368|gb|EEX47239.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii DSM 17565] Length = 618 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 ITPTADGEACNQC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVISFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + S ID +++ EY + + +S + D L + Sbjct: 231 GGNITYKSVIDNLNVLDYEYYFRLTDSFLENKVSDALLLFNDVLNKGFD 279 >gi|166710949|ref|ZP_02242156.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzicola BLS256] Length = 698 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARL-MQVVAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|304409215|ref|ZP_07390836.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS183] gi|307303218|ref|ZP_07582973.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica BA175] gi|304353036|gb|EFM17433.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS183] gi|306913578|gb|EFN44000.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica BA175] Length = 1125 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 126/317 (39%), Gaps = 37/317 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L + + + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQGEIGTQLNHILTQEQFPFDAEALKLLAKAANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELL-------------SQDQKIAFDFLIEFI 278 + +++ ++ +++ + ++ + D + D + L+E + Sbjct: 230 GNVMLTQVQTMLGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELL 289 Query: 279 LKEICKSAKAAALSGQL 295 + AA L Sbjct: 290 HQITLTQFAPAAAQQSL 306 >gi|261868269|ref|YP_003256191.1| hypothetical protein D11S_1608 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413601|gb|ACX82972.1| hypothetical protein D11S_1608 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 467 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 42/356 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + D + + + K V++ R + Sbjct: 65 VSGVTAEPCGVC------EHCNAIEKGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVLGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L ++ + L Q +I D + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALEQSQIADYLAYILNQEQIPFESLALDKLANAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + M + DE SQ ++ + L + +++ ++ A A + Sbjct: 226 AMSNGNVTL----NIVNDMLGLLDE--SQAIEMIYA-LQQGNGEKLMQAVNAVA-----D 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI-----FHLLSKARECNDLYFRDFYAI 347 +A ++ + + +H +M L + + L+K D+ F FY + Sbjct: 274 KAGDWDELLREVAENLHKIAMQQLLPQAALDESSQIGFLAKHIAPQDVQF--FYQV 327 >gi|33568023|emb|CAE31936.1| DNA polymerase III subunit Tau [Bordetella bronchiseptica RB50] Length = 743 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 50 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 109 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D+L L + N V+E+ ++ Sbjct: 110 ENGITSKPCGQCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 154 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 155 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 214 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + + L+ + +I + AA GS+ A+ + D+ I Sbjct: 215 CLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAI 270 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + D L S D E ++ + + A L Sbjct: 271 AYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADL 330 Query: 292 S-------------GQLEEADQIAQIYFSLVKRVH 313 + G L + D + + L +H Sbjct: 331 AVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH 365 >gi|326570261|gb|EGE20306.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC8] Length = 748 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + AA GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQ--------QIADELLSQ-----DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I+ + + D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIEIVYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|260596869|ref|YP_003209440.1| DNA polymerase III subunits gamma and tau [Cronobacter turicensis z3032] gi|260216046|emb|CBA28758.1| DNA polymerase III subunit tau [Cronobacter turicensis z3032] Length = 667 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 124/308 (40%), Gaps = 28/308 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 87 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 131 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 132 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LE Q I + AA GS+ A+ + D+ I Sbjct: 192 CLQFHLRALDPDQIRQQLEHVLTQEGIAHEPRALQLLARAADGSLRDALSL----TDQAI 247 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + L++ D + + + + + A + Sbjct: 248 ASGDGQVTTQAVGAMLGTLDDDQALSLIEALVAADGERVMQQINDAAARGVEWEALLVEM 307 Query: 292 SGQLEEAD 299 G L Sbjct: 308 LGLLHRVA 315 >gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus selenitireducens MLS10] gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus selenitireducens MLS10] Length = 600 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 40/334 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I + L ++ HA LF G +G GK + A V Sbjct: 6 LYRVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + ++ D + + + N VDEIR IR Sbjct: 66 QAPVEEPCNTC------STCTGIQDGSIVDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPSGASYKVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ + + K +E++ + + A+ G + A+ +L D Sbjct: 171 QRFDFKRITAHTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADT 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------------FIL 279 + + +I Q+ M+ + D+ ++ D A D L+ F+ Sbjct: 231 SVTLDDVLSIIGAASQDLMYDVMEALLDQQVA-DGLTAIDRLMSDGKDPGRFMEDFIFLT 289 Query: 280 KEIC--KSAKAAALSGQLEEADQIAQIYFSLVKR 311 +++ ++A A SG + DQ +I S + Sbjct: 290 RDLLMVQAAPALDESGDRKLGDQRFEILASKASQ 323 >gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum ATCC 27405] gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum ATCC 27405] Length = 547 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + E + + L CSGR+ HA LF G +G GK T+ ++ V Sbjct: 6 LYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N +VD+IR +R Sbjct: 66 NPKDGDPCNQC------EICQGILNGSLLDVIEIDAASNN---------SVDDIRVLRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +++ K +E + + + + G++ AI IL D+ IS Sbjct: 171 QRFDFRRIPVDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISIL----DQCIS 226 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +Y D++ + + ++ D + +++ + + E +++ Sbjct: 227 LGSKELTYEDVLSVVGLVTD-TFIAEVVDAIKNKEVGRVLNAVDELVME 274 >gi|289667731|ref|ZP_06488806.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 355 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|322417711|ref|YP_004196934.1| DNA polymerase III subunits gamma and tau [Geobacter sp. M18] gi|320124098|gb|ADW11658.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M18] Length = 575 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 33/345 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + N VD+IR +R Sbjct: 65 ESGLTVEPCNSC------STCLEITDGNSVDVFEIDGASNT---------GVDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F ++ + L +Q + D V GS+ ++ L Sbjct: 170 CQRFDFKRIALPRIVSRLRYIVDQEGVQVSDEALSVVARKGDGSMRDSLSTLDQVLAFCG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA-----FDFLIEFILKEICKSA 286 + L+ + + ++ + + + L I F + + E+ Sbjct: 230 NSVSDADVAALLGVVDRRLIMEGCRSVLEADLRGALGIVARVDSFGYSMRQFCHELIDQF 289 Query: 287 KAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIF 327 + AA+ + E + ++ L + +L R I Sbjct: 290 RNAAILKAVGEPGDLLELSDAELSELRALGAHATPQDLQRHLAIL 334 >gi|289662384|ref|ZP_06483965.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 365 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|225571144|ref|ZP_03780142.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM 15053] gi|225159975|gb|EEG72594.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM 15053] Length = 521 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I K L + R+ HA LF G +G GK T+ +A V Sbjct: 3 LYRKFRPDEFEDVKGQDAIVKTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +AS + + + + N VD IR IR Sbjct: 63 HPVDGSPCGEC------AMCRTIASGTSMNVIEIDAASNN---------GVDNIREIREE 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 108 VAYRPTEGRFKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRC 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L +L + + ++ A GS+ A+ +L I Sbjct: 168 QRYDFKRISIETISGRLRELIEKEEWDVEEKAVRYIARMADGSMRDALSLLDQCAAFYIG 227 Query: 238 SYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILK 280 + H+ A+ + ++ ELL D + + E +++ Sbjct: 228 ERLTYDHVLEVLGAVDTEVFSRLLRELLDMDVHQVIETVEELVMQ 272 >gi|319776114|ref|YP_004138602.1| DNA polymerase III/DNA elongation factor III, tau and subunit gammas [Haemophilus influenzae F3047] gi|329123278|ref|ZP_08251846.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC 11116] gi|317450705|emb|CBY86925.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae F3047] gi|327471487|gb|EGF16935.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC 11116] Length = 688 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|113461343|ref|YP_719412.1| DNA polymerase III subunits gamma and tau [Haemophilus somnus 129PT] gi|112823386|gb|ABI25475.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Haemophilus somnus 129PT] Length = 667 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 145/355 (40%), Gaps = 41/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS C R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFSEVVGQEHILTALSNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 IRGVTAEPCGEC------EHCKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +LSE + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALSEKQIAQHLEFILQQENIPFEYPALEKLATAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + L + D D L + L++ A+ E Sbjct: 226 AMGNANVSLDTVSIMLGLL----------DDNQPIDIL--YALQQGNGEMLMKAIQTVAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI----FHLLSKARECNDLYFRDFYAI 347 + ++ +L +++H +M L +Q+ L+K D+ F FY + Sbjct: 274 KGADWDKLLVTLAEKLHQIAMLQLLPQQINEENSLGFLAKHITPEDVQF--FYQV 326 >gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira hyodysenteriae WA1] gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira hyodysenteriae WA1] Length = 527 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 146/353 (41%), Gaps = 34/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + + G E I K +S+ ++ HA LF G G+GK +L A + Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P Q+ + D + + + N ++ IR I Sbjct: 67 VNGPTDKPCGVC------PSCTQIENGTPLDVIEIDGASNR---------GIENIRTIIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ G ++V +ID V + A NALLK+LEEPP V+FIL + + +L TIRSR Sbjct: 112 NVRISPVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSR 171 Query: 181 CLSIKFNSLSENNLYK----ALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 C F SL +L K L++ I + + A GSV + IL Y Sbjct: 172 CQQYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTT 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE---------IC 283 DK + D+ + ++ D ++ D++ F+F+ + + I Sbjct: 232 DKKYITSADVNAVVGGNN-FSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSII 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM-YNLDRRQMIFHLLSKARE 335 + + + + ++ +I + + F+ YN D + I + E Sbjct: 291 EYIRVVLMIKSGIDDIKLLEITENERDDLKTFANHYNDDEIERILDYILSVEE 343 >gi|220934248|ref|YP_002513147.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] gi|219995558|gb|ACL72160.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] Length = 553 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 128/328 (39%), Gaps = 28/328 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFEEMVGQPHVVRALSNALRDQRLHHAYLFTGTRGVGKTTVARVLAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQCSA------CREIDEGRFIDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + +L K LEQ + + AA GS+ A+ +L D+ I Sbjct: 170 CLQFSLKAMPADMVGAHLKKVLEQEGVDFDPPAIMRLARAASGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + L + D + + + +A L Sbjct: 226 AYGSGALRDDDVREMLGAISQDHLERMLQALAAGDGPALMGAVDDLAQRAPDYNAILGEL 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYN 319 L + Q+ +L + + Sbjct: 286 VSLLHQVALAQQVPEALDEGAVDVAAVQ 313 >gi|71281938|ref|YP_270411.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea 34H] gi|71147678|gb|AAZ28151.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea 34H] Length = 715 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 35/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q+L G E + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ + D L + + K VD+ R I Sbjct: 65 ELGITDKPCGKCDA------CIDIDQGRFVDLLEIDAASKTK---------VDDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ E+ L + L ++ + AA GS+ ++ + D+ I Sbjct: 170 CLQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I++ I L DQ + +I + ++ A Sbjct: 226 AQGQGHINLT----------NIQQMLGGIDQNWVYQLVITLLKQD--SQALMTLSQEIAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSM 317 A ++++ L++ H ++ Sbjct: 274 YAPSYSRLFAELIQLFHQIAL 294 >gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT 12057] gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT 12057] Length = 609 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MNPTADGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ + + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFSRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S I+ +++ EY + D + + D L + Sbjct: 231 GGHITYKSVIENLNVLDYEYYFKLTDFFLDNKVGDALLLLNDVLNKGFD 279 >gi|312869732|ref|ZP_07729879.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris PB013-T2-3] gi|311094781|gb|EFQ53078.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris PB013-T2-3] Length = 601 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 127/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A + + Sbjct: 6 LYRVWRPQRFDELVGQQVVTQTLKNAIVTHQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 66 HLKDGEPCNEC------AICKAITHGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAQDAYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + + AL M+ I + +D + + LI F Sbjct: 231 QVQLKDALTVTGSVTKQLLEKYFFEVTAHKSADALNTMKDILNA--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + + + + A +Y + Sbjct: 289 IRDVLLYQESPQLIMVESTGLTD--EDFQKMSAAAPATVLYQM 329 >gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC 533] gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC 533] Length = 602 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 26/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADQGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 K+ Y D + I A +K++Q+ LL+ A + + + Sbjct: 231 KV--KYEDALRITGYA-AQEKIEQVLLNLLNGKTSAALEIVHALLQD 274 >gi|319787610|ref|YP_004147085.1| DNA polymerase III subunits gamma/tau [Pseudoxanthomonas suwonensis 11-1] gi|317466122|gb|ADV27854.1| DNA polymerase III, subunits gamma and tau [Pseudoxanthomonas suwonensis 11-1] Length = 673 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 39/319 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFSELVGQEHVVRALGNALDTGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N VD++R + Sbjct: 65 EKGTSAEPCGQC------AACMDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGQYKVYLIDEVHMLSKAAFNALLKTLEEPPGHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + K L I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEGQIEGQMTKILAAEGIEADASAIRQLARAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + L++ + AL G +E Sbjct: 226 AYAGGALR-----------EDVVQTMLGSVDRTQVAALLDALAD-----GNGEALLGTIE 269 Query: 297 EADQIAQIYFSLVKRVHAF 315 A + ++++ + Sbjct: 270 TLAGFAPDWGNVLEALAEA 288 >gi|190149536|ref|YP_001968061.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914667|gb|ACE60919.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 688 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC 700122] gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC 700122] Length = 862 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 69/350 (19%), Positives = 127/350 (36%), Gaps = 37/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G IE+ + S R+ HA LF G +G GK T+ A +L Sbjct: 5 LYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + AP C +A D + + V+ +R I Sbjct: 65 KGPTPAPDGECEQ------CLAIAEGTHPDVNEMDAASRT---------GVENVREEIIG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 110 RVQFAPVRGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F+ L+ + L + + A G + A+ L + Sbjct: 170 CQRFDFHRLANEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGE 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK--EICKSAKAA 289 + +D++ M I + +D F ++ E++ ++ + A+ Sbjct: 230 GRVTMQVALDVLGALDSN----DMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDL 285 Query: 290 AL------SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 A + L + + + + ++ DR + +L Sbjct: 286 ASYVRDLYAFILTDGALEPRSSATNEQLAAQAGLFGPDRLAHVLSILGDV 335 >gi|85712669|ref|ZP_01043715.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] gi|85693519|gb|EAQ31471.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] Length = 640 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 142/369 (38%), Gaps = 55/369 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P+ ++ G + + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P +++ D + + + K V++ R + Sbjct: 65 ERGVSARPCGEC------PSCEEIEQGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + + +A GS+ A+ + D+ I Sbjct: 170 CLQFNLRALDREQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + + + L + + D L S D F+ E IL E+ Sbjct: 226 AQGQGKVQVESVQRMLGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNEL 285 Query: 283 CKSAKAAALSGQLEE------------------ADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + AL Q+ ++ Q+Y+ +V + Y +D + Sbjct: 286 QRVIHRIALIQQIPAMMGAEDKTNTTEALLRKLPAEVLQLYYRIVIEGKKEAPYAVDPQS 345 Query: 325 MIFHLLSKA 333 + L + Sbjct: 346 AVEMTLLRL 354 >gi|307247251|ref|ZP_07529300.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856224|gb|EFM88378.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 688 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQKMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|138893695|ref|YP_001124148.1| DNA polymerase III subunits gamma and tau [Geobacillus thermodenitrificans NG80-2] gi|134265208|gb|ABO65403.1| DnaZX [Geobacillus thermodenitrificans NG80-2] Length = 559 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 41/324 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + D L + + N VDEIR IR Sbjct: 66 HAPAAEPCNEC------PVCLGITNGTVPDVLEIDAASNN---------RVDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + L+ + + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFRRIPLSAIVSRLKYVANAQGVEASDEALSAIARAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG---Q 294 + + D++LS +F L +FI I + AA L Sbjct: 227 FSNGKLEV--------------DDVLSMTGAASFAALADFI-GAIYRKDTAAVLQQFETM 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMY 318 + + ++ L+ +Y Sbjct: 272 MAQGKDPNRLVEDLILYCRDLLLY 295 >gi|295702260|ref|YP_003595335.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium DSM 319] gi|294799919|gb|ADF36985.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium DSM 319] Length = 562 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I K L + HA LF G +G GK T A V Sbjct: 6 LYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N VDEIR IR Sbjct: 66 KAPIAEPCNEC------ATCRGITDGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + A+ G + A+ +L D+ IS Sbjct: 171 QRFDFKRISPEDIVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + Q I + +++ A D + I Sbjct: 227 YSTEKVSLEDVLSITGAVSQSFIVKIVQAIFNKNIVEALDSVESLI 272 >gi|218132111|ref|ZP_03460915.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697] gi|217985761|gb|EEC52102.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697] Length = 607 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTAEGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + S I+ +++ EY + + + + D L + Sbjct: 231 GGNITYQSVIENLNVLDYEYYFRLTDHFLENKVCDALLLLNDVLNKGFD 279 >gi|299782857|gb|ADJ40855.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 563 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + L+D + + + N V++IR IR Sbjct: 66 HQTDGEPCNEC------ELCQAITAGQLNDVIEIDAASNN---------GVEQIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 VKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F +S + + L+Q K+ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGDE 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + AL+ + +I +D + + LI F Sbjct: 231 QVTIDDALLVTGSVTKQLVQEYFLQVAKGDSAPALETLTKITGA--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + L + + L + ++Y + Sbjct: 289 IRDVLLYQESPSLI--DLPATGLRKEDFDQLSGAASSTALYQM 329 >gi|227514026|ref|ZP_03944075.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227087612|gb|EEI22924.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 563 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + L+D + + + N V++IR IR Sbjct: 66 HQTDGEPCNEC------ELCQAITAGQLNDVIEIDAASNN---------GVEQIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 VKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F +S + + L+Q K+ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGDE 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + AL+ + +I +D + + LI F Sbjct: 231 QVTIDDALLVTGSVTKQLVQEYFLQVAKGDSAPALETLTKITGA--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + L + + L + ++Y + Sbjct: 289 IRDVLLYQESPSLI--DLPATGLRKEDFDQLSGAAGSTALYQM 329 >gi|217966691|ref|YP_002352197.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum DSM 6724] gi|217335790|gb|ACK41583.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum DSM 6724] Length = 518 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 74/344 (21%), Positives = 130/344 (37%), Gaps = 30/344 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L + HA LF G +G GK T+ A + Sbjct: 5 LYRKWRPQTFEEVVGQEHIVITLQNSLKYAHIGHAYLFAGPRGTGKTTVARILAKALNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C ++A D + + + N +DEIR IR Sbjct: 65 KGPTPTPCLKCES------CVEIAEGRSIDVIEIDAASNR---------GIDEIRDIREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L ++V +ID V + A NALLK LEEPP+ V+FI+ + + TI SRC Sbjct: 110 ARLLPVRDRYKVYIIDEVHMLTNEAFNALLKILEEPPEHVIFIMATTEPQKVPLTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F L+ + + K L ++ + + I + GS+ AI +L D Sbjct: 170 QRFDFRRLTRDEIIKQLAKIAESEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQ 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSAK 287 + +L+ +P E+ + + + + + + + + +E+ + + Sbjct: 230 EITEDFARNLLGLPTYEFTYKFAKALGEYNILEGYSLLQQVFQMGKNPQQFARELLQHFR 289 Query: 288 AAALSGQLEEADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLL 330 L E + I + + +Y + R Q I L Sbjct: 290 NLLLLKADERIGNLLSITQEEFEELMEETKLYTMQRLQDIIDQL 333 >gi|21241864|ref|NP_641446.1| DNA polymerase III subunits gamma and tau [Xanthomonas axonopodis pv. citri str. 306] gi|21107246|gb|AAM35982.1| DNA polymerase III tau and gamma subunits [Xanthomonas axonopodis pv. citri str. 306] Length = 689 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEPIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + ++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLHALTDGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 531 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 136/346 (39%), Gaps = 36/346 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G E I + L R+ HA LF G +G GK T+ A + Sbjct: 5 VLARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ + D L + + N +D+IR +R Sbjct: 65 KNGPTIKPCGVCEN------CVEISKSSSVDVLEIDGASNN---------GIDDIRVLRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID + A NALLK+LEEPP V+FI+ + I TI SR Sbjct: 110 NVKFSTASSKYKIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSR 169 Query: 181 CLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 C +F +S + ++ D + V A+ GS+ A+ +L + Sbjct: 170 CQRYRFKLISGAEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNT 229 Query: 233 DKIISSY-IDLIHIPRQEY-----------ALQKMQQIADELLSQDQKI-AFDFLIEFIL 279 +I Y L+ + ++ + + +I E+ Q I F + L Sbjct: 230 GRITGDYMRGLLGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHL 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + A++ E +I + SL M NL + + Sbjct: 290 RNVMIYSINPAIAEISSEDKKIFDVQKSLFTVSRYVRMNNLLSKAL 335 >gi|326563685|gb|EGE13937.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 103P14B1] gi|326573294|gb|EGE23262.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 101P30B1] gi|326575807|gb|EGE25730.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis CO72] Length = 748 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + A GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|254521543|ref|ZP_05133598.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp. SKA14] gi|219719134|gb|EED37659.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp. SKA14] Length = 683 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 135/348 (38%), Gaps = 45/348 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 11 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 70 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N VD++R + Sbjct: 71 EQGTSADPCGQC------AACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 115 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V ++D V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 116 NAQYMPSRGKYKVYLVDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 175 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L I DS + AA GS+ + +L D+ I Sbjct: 176 CLQFNLKRLDEDQIQGQMTRILAAEDIEADDSAIVQLAKAADGSLRDGLSLL----DQAI 231 Query: 237 SSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + D++ ++ + D L D + AAL Sbjct: 232 AYAGGALREDVVRTMLGTVDRTQVAAMLDALAEGDGPRLLQVV--------------AAL 277 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + E + + + +L + +H + L + L L Sbjct: 278 A---EFSPDWSGVLEALAEGLHRIQVQQLVPGAAVAEGLDATAFAERL 322 >gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] Length = 569 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 144/351 (41%), Gaps = 32/351 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + G + I K L + + HA LF G +G GK + A V Sbjct: 5 LYREYRPMVFEDVIGQDHIIKTLINQINTNNLSHAYLFCGTRGTGKTSTAKILARAVNCT 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D K P +C + + D + + + N +VD+IR +R Sbjct: 65 HDGDK-PCNVCQS------CVSIMDASNLDVIEIDAASNN---------SVDDIRELRDT 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T N ++V +ID V ++ A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 109 VKYTPNKSKYKVYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEPNKIPATILSRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDC 232 F + + L + ++ + D V GSV ++ IL + Sbjct: 169 QRFDFKRIGLDTLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSFSNG 228 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSAK 287 + +DL+ + + I + +++ K+ D+ + +++++ + Sbjct: 229 PISMEEVLDLLGAAAPGQLISLSESIIESDVARSMKLVDDYFMWGKDIRLLVEDLTSVFR 288 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + + EAD + + ++ S ++D + I +L+ E D Sbjct: 289 SMMMMKIFNEADSVVEFNEEYRNKLLEKSK-SVD-TEEIIRILNLLSEAID 337 >gi|303249577|ref|ZP_07335784.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251796|ref|ZP_07533698.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651651|gb|EFL81800.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860703|gb|EFM92714.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 685 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|323340130|ref|ZP_08080394.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis ATCC 25644] gi|323092321|gb|EFZ34929.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis ATCC 25644] Length = 577 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 35/321 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + L G + I K L + + HA LF G +G GK + +A + Sbjct: 6 LYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKALNCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + L+D + + + N V+EIR IR Sbjct: 66 NQVNGDPCNEC------ETCKAITAGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ +A NALLK+LEEPP V+FIL + I +TI SR Sbjct: 111 VKYAPTQADYKVYIIDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + +E + + + + + AA G + A+ IL Sbjct: 171 QRFDFKRITSGAILERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 ++ + L + + ++ + A + L+E Sbjct: 223 ---QVLSFGDNKVTLDNALLVTGSVTRENLIKYLSQVQNH-----ETVAGLQTIHAILDE 274 Query: 298 ADQIAQIYFSLVKRVHAFSMY 318 ++ L+ +Y Sbjct: 275 GKDSKRLLEDLINCCRDLLLY 295 >gi|163814836|ref|ZP_02206224.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759] gi|158449775|gb|EDP26770.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759] Length = 567 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK ++ +A Sbjct: 23 LYRKWRPDTFDEVKGQDHIVTTLRNQIKNDRLGHAFLFCGTRGTGKTSIAKIFAKACNCE 82 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +A + + + + + N VD IR+IR Sbjct: 83 HPVDGSPCNECAS------CRAIADGSSLNVIEIDAASNN---------GVDNIRQIREE 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + S I TI SRC Sbjct: 128 VAYPPTEGKYKVYIIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSRC 187 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + L L + D+V + GS+ A+ IL + Sbjct: 188 QKYDFRRIPVDVIADRLADLMDREGLEADRKAIDYVAKSGDGSMRDALSILDQCVAFNLG 247 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + D + + ++ + +L +D + A D + E + + Sbjct: 248 QKLTYDKVLETIGAVDIDTFARLLECVLREDVEGAIDVVDEIVWQ 292 >gi|72119213|gb|AAZ61476.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Ralstonia eutropha JMP134] Length = 745 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 142/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 20 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKALNC 79 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P C ++ S D++ + + N VDE+ Sbjct: 80 TGADGNGGITAQPCGQCKA------CTEIDSGRFVDYIEMDAASNR---------GVDEM 124 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 125 AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPV 184 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + + L+ Q I + + AA+GS+ A+ + Sbjct: 185 TVLSRCLQFNLKQMPPAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSLTDQA 244 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEF 277 + Y ++ + ++ Q Y +Q + +A E + D+ ++F ++ Sbjct: 245 IAYSAGEVSEEAVRGMLGAIDQGYLVQLLDALAAEDGAALIGIADAMADRSLSFAGALQD 304 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA------FSMYNLDRRQMIF 327 + + K A A A+ +++ A L A + + NL R ++ Sbjct: 305 LGSLLHKIALAQAVPASVQDEWPEAGDVRRLAGVFDAQEVQLFYQIANLGRSELAL 360 >gi|295694719|ref|YP_003587957.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM 2912] gi|295410321|gb|ADG04813.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM 2912] Length = 664 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 23/258 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L +GR+ HA LF G +G GK ++ A V Sbjct: 6 LYREWRPQLFADVVGQPHIVRTLQNALRNGRLAHAYLFTGPRGTGKTSVAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P CN + + ++ D + + + N +DE+R +R Sbjct: 66 QGSGEEPCNQCNA------CRGIMDGSVLDVVEIDAASNR---------GIDEVRELRDQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC Sbjct: 111 VRYAPTQVRHKVYIIDEVHMLTPEAFNALLKTLEEPPEHVIFILATTEPHKVPATIMSRC 170 Query: 182 LSIKFNSL----SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L D + AA G + A+ +L D+ +S Sbjct: 171 QRFAFQRIYAGDMAERMKSILAHKGRQAEDKALWLIARAADGGLRDALSML----DQALS 226 Query: 238 SYIDLIHIPRQEYALQKM 255 D++ L ++ Sbjct: 227 FSDDVLREEDVLALLGRL 244 >gi|282891156|ref|ZP_06299660.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498973|gb|EFB41288.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 512 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 131/337 (38%), Gaps = 36/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P Q + G + I L GR+ +A LF G +G GK TL +A + Sbjct: 6 VSARKYRPQRFQEVLGQDPIITTLKNAIQMGRLANAYLFCGSRGTGKTTLARLFAKALNC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P C +++++ D L + + + +D+IR+I Sbjct: 66 LTPSPEHEPCNQCAS------CREISTGHSLDVLEIDGASHR---------GIDDIRQIN 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A +G +++ +ID V + + A NALLK+LEEPP V F + +L TI S Sbjct: 111 ETVGYAAASGKYKIYIIDEVHMLTKEAFNALLKTLEEPPLNVKFFFATTEPHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC N + + + L + I + + A G + A +L D++ Sbjct: 171 RCQRFNLNRIPLEKIVEKLRHITQDMGIEAQEEALHIIAKRAEGGLRDAESLL----DQV 226 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + + + Q +A L +++ FDF + KE +A Sbjct: 227 LVFHDGAMST----------QSVASVLGIMPKEVLFDF--DKAGKEGRLAAAFEIAHHIF 274 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 E Q +LV+ + L +Q F LS Sbjct: 275 TEGKDWQQFCETLVEHFRTLLLIKLSGKQAPFLALSD 311 >gi|322513952|ref|ZP_08067027.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae ATCC 25976] gi|322120178|gb|EFX92136.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae ATCC 25976] Length = 467 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQVQIANHLEFILQQENIPYESAAMEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 I +P + L + ++ L D + A + K + Sbjct: 226 VVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMSVIQSVAEKGV--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDVAQTLHQIAMLQLLKNSGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|161611258|ref|YP_296320.2| DNA polymerase III subunits gamma and tau [Ralstonia eutropha JMP134] Length = 730 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 142/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKALNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P C ++ S D++ + + N VDE+ Sbjct: 65 TGADGNGGITAQPCGQCKA------CTEIDSGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP V FIL + I Sbjct: 110 AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + + L+ Q I + + AA+GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEF 277 + Y ++ + ++ Q Y +Q + +A E + D+ ++F ++ Sbjct: 230 IAYSAGEVSEEAVRGMLGAIDQGYLVQLLDALAAEDGAALIGIADAMADRSLSFAGALQD 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA------FSMYNLDRRQMIF 327 + + K A A A+ +++ A L A + + NL R ++ Sbjct: 290 LGSLLHKIALAQAVPASVQDEWPEAGDVRRLAGVFDAQEVQLFYQIANLGRSELAL 345 >gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1] gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1] Length = 599 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 128/332 (38%), Gaps = 28/332 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G E + + L GR+ HA LF G +G+GK T+ A V Sbjct: 6 LYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P +C + +A D + + + + +V++ R I Sbjct: 66 APPAERPCGVCES------CRAIAEGHAVDVIEMDAASHT---------SVEDAREIIER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 111 VQFRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + ++ L Q + + + AA GS+ A+ +L D++++ Sbjct: 171 QRFVFNRHTVASIAAHLRSIAAQEGVTLEAGVAEAIARAATGSMRDALSVL----DQLMA 226 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 I + + L Q++ +AD L++ D A + L Sbjct: 227 YGGGTISLEQVRNLLGAGEMQEVTALADALIAGDLPGALQVIANVAAAGADLRQFTRDLV 286 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 +L + + V ++R+ Sbjct: 287 ERLRAVMLLRAGADRSLLDVAEEEAVQIERQA 318 >gi|304437633|ref|ZP_07397587.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369376|gb|EFM23047.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 613 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 148/357 (41%), Gaps = 48/357 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS+ SG++ HA LF G +G GK + A + Sbjct: 6 LYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ + ++ + D + + N +DEIR +R Sbjct: 66 EGPTLTPCGICDS------CRSISDGSSMDVFEIDAASNR---------GIDEIRDLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G++++ +ID V + A NALLK+LEEPP++V+FIL + + +TI+SRC Sbjct: 111 VKFAPTEGHYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + L ++ I + + A G + A+ IL D+ ++ Sbjct: 171 QRYDFHRITVTEIRDRLIYVCKESDIAAEEDALGIIAEQADGGMRDALSIL----DQCMA 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI---------LKEIC 283 + R + L + + +A E+ ++D L E + L E+ Sbjct: 227 LAEGTLTAERVQETLGLVGRAWIRHMAGEIAARDAAALIAQLSELLQSGRELKQVLAELA 286 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM----IFHLLSKAREC 336 + + ++G + A A++ + + +D Q I +L + E Sbjct: 287 QYFRRLMIAG-VGGAVSAAELCAGDAEELR------MDAAQFTQEEIMSILRRLNET 336 >gi|320529756|ref|ZP_08030834.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis F0399] gi|320137995|gb|EFW29899.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis F0399] Length = 617 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 82/353 (23%), Positives = 133/353 (37%), Gaps = 39/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS+ SG+ HA LF G +G GK + A + Sbjct: 6 LYRRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +A + D + + N +DEIR +R Sbjct: 66 QGPTLTPCGQCES------CRAIAEGSSMDVFEIDAASNR---------GIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V + A NALLK+LEEPP VLFIL + + +TI+SRC Sbjct: 111 VKFAPTEGRCKIYIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F+ ++ + + L + I D + A G + A+ IL + Sbjct: 171 QRYDFHRITVAEIRERLSYVCRESGIAANDDALAIIAAQADGGMRDALSILDQCSALAEG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------FILKEICKS 285 + + + +E Q QIAD+ S + L F+ + Sbjct: 231 TLTAEQVQESLGLVGKERIAQLAVQIADKDGSGLLAGLSELLQSGRELNRIFVELALHFR 290 Query: 286 AKAAALSGQLEEADQIA--QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A A G A + + + L FS + I ++L + E Sbjct: 291 ALMIAGVGGASFAAEFSGTEAAEQLRADAARFS------QPEIMNILRRISET 337 >gi|317477107|ref|ZP_07936348.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|316906650|gb|EFV28363.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 606 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTAEGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + S I+ +++ EY + + + + D L + Sbjct: 231 GGNITYQSVIENLNVLDYEYYFRLTDHFLENKVCDALLLLNDVLNKGFD 279 >gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] Length = 477 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 76/343 (22%), Positives = 136/343 (39%), Gaps = 39/343 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L SGR+ HA LF G +G GK ++ +A + Sbjct: 6 LYRRYRPQDFDSVVGQEYVTRILKNQILSGRVGHAYLFSGIRGTGKTSIAKIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + D + + + N VDEIR IR Sbjct: 66 HNEDGNPCNACDT------CLNIEKPGVMDIIEIDGASNR---------GVDEIREIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + + A NALLK+LEEPP+ ++FIL + + TI SRC Sbjct: 111 VKYPPTMGKYKVYIIDEVHMLTKEAFNALLKTLEEPPEHIVFILATTEPNKLPMTILSRC 170 Query: 182 LSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH-----YDC 232 +S+ + LE + + DF+ S+ A+ +L + Sbjct: 171 QRFDIKPISQERIAGQIAHILEDIGVSMDREAIDFIAYRGDSSMRDALSLLDQVIDIREA 230 Query: 233 DKII--SSYIDLIHIPRQEYALQKMQQI-------------ADELLSQDQKIAFDFLIEF 277 DK I + + + ++ +Q + A +D + F LI++ Sbjct: 231 DKTITYEDVLAFMGMVDEDQIAGLVQDVVAGDKGGVLLKFKAMREAGRDSGLVFGQLIDY 290 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + K + AA L + +Q ++ + V Y++ Sbjct: 291 LRKVLIVKTTGAASQEILGITESASQALAAVGQDVPDKRFYSM 333 >gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri 224-1] gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri 224-1] Length = 602 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 87/354 (24%), Positives = 143/354 (40%), Gaps = 38/354 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDGVVDQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++D + + + N VDEIR IR Sbjct: 66 NLQDGEPCNECEN------CLAADKGTMNDIIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + +++L L Q KI + + + A G + ++ IL YD D Sbjct: 171 QRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-----KEICKSAKA 288 K+ Y D + I A +K++Q+ +LL AF+ + + K I + Sbjct: 231 KV--KYDDALKITGYA-AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELIS 287 Query: 289 AALSGQL-----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + G L +EA + + Y + + ++ YNL Q L+ R N Sbjct: 288 LTVKGMLVVKSNKEATFLTKDYATELAKIPEEKFYNL--VQAANTALNDLRYTN 339 >gi|294496893|ref|YP_003560593.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium QM B1551] gi|294346830|gb|ADE67159.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium QM B1551] Length = 562 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I K L + HA LF G +G GK T A V Sbjct: 6 LYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N VDEIR IR Sbjct: 66 KAPIAEPCNEC------ATCRGITDGSISDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYAPSAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + A+ G + A+ +L D+ IS Sbjct: 171 QRFDFKRISPEDIVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + + + Q I + +++ A D + I Sbjct: 227 YSTEKVSLEDVLSITGAVSQAFIVKIVQAIFNENIVEALDSVESLI 272 >gi|210629774|ref|ZP_03296118.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279] gi|210160801|gb|EEA91772.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279] Length = 387 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 137/357 (38%), Gaps = 40/357 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + G + I L GR+ HA LF G +G GK T+ A +L Sbjct: 4 LYRKYRPLTFESVVGQQHIVSTLKHAVAEGRLSHAYLFCGPRGTGKTTMARILAKSLLCE 63 Query: 62 PDFSKAPVRM--CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-I 118 + C PD P + +A+ D L + VD +R I Sbjct: 64 GSEAARATGASGCMPDGTCPECEAIAAGTHPDVYELDAASRT---------GVDNVREEI 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +S G ++V +ID V + A NALLK+LEEPP V+F+L + IL TI Sbjct: 115 INSVSFAPVRGAYKVYIIDEVHMLTTAAFNALLKTLEEPPSHVVFVLCTTDPQKILETIL 174 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY---- 230 SRC F+ +S ++ L EQ + + V A G + A+ L Sbjct: 175 SRCQRFDFHRISNEDIVGRLRFICEQEGFAFDEEALEIVARHARGGMRDALSTLEQLSVF 234 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF----------LIEFIL 279 D + L+ E A + + A ++ +D F L+E Sbjct: 235 GDGSVHVDDARSLLG----EVASTVLSEFACKIAVRDTVGLFGLVRVQADEGNDLMELTH 290 Query: 280 KEIC--KSAKAAALSG-QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + + AA++G + E D + +LV+ F DR +L A Sbjct: 291 DLVAHVRDVYTAAIAGPKTELFDGTPEEVAALVEEARLFEGA--DRLARALTVLDDA 345 >gi|78224612|ref|YP_386359.1| DNA polymerase III subunits gamma/tau [Geobacter metallireducens GS-15] gi|78195867|gb|ABB33634.1| DNA polymerase III, tau subunit [Geobacter metallireducens GS-15] Length = 582 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 130/352 (36%), Gaps = 38/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P ++ + D L + + N VD+IR +R Sbjct: 65 EQGMSPEPCNVC------PACTEITAGTAVDVLEIDGASNT---------GVDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----C 232 C F + + L + I D+ V GS+ ++ +L Sbjct: 170 CQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCG 229 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 D++ + L+ + + L + +D + D + + E+ Sbjct: 230 DQVRDEEVVSLLGVVDRRLLLDATAAV----FGRDTRTVLDIVARVDEFGYNMRQFCGEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + + + + + + L LD Q +L +A Sbjct: 286 IDHLRNLLILKAVGDGTDLLDLSEAELATLRQQAESVPLDDLQRHLTVLLRA 337 >gi|184154759|ref|YP_001843099.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum IFO 3956] gi|260663212|ref|ZP_05864104.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum 28-3-CHN] gi|183226103|dbj|BAG26619.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum IFO 3956] gi|260552404|gb|EEX25455.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus fermentum 28-3-CHN] Length = 563 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 129/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + L+D + + + N V++IR IR Sbjct: 66 HQTDGEPCNEC------ELCQAITAGQLNDVIEIDAASNN---------GVEQIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 VKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 F +S + + L+Q K+ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAKDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGDE 230 Query: 232 --------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + AL+ + +I +D + + LI F Sbjct: 231 QVTIDDALLVTGSVTKQLVQEYFLQVAKGDSAPALETLTKITGA--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + L + + L + ++Y + Sbjct: 289 IRDVLLYQESPSLI--DLPATGLRKEDFDQLSGAASSTALYQM 329 >gi|260582657|ref|ZP_05850446.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae NT127] gi|260094329|gb|EEW78228.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae NT127] Length = 688 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|28198956|ref|NP_779270.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa Temecula1] gi|182681665|ref|YP_001829825.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M23] gi|28057054|gb|AAO28919.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa Temecula1] gi|182631775|gb|ACB92551.1| DNA polymerase III, subunits gamma and tau [Xylella fastidiosa M23] gi|307580101|gb|ADN64070.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa subsp. fastidiosa GB514] Length = 543 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + D L + + N VD++R + Sbjct: 65 EQGTSADPCGRCTA------CLDIDVGRYIDLLEIDAASNT---------GVDDVREMIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + + + ++ +I D+ + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEEQIQRQIAKILTAEQITADDTAIIELSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + D L + D+ L I + + + A E Sbjct: 226 AYAGGTLRE----------GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIA--TLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +L + +H + L Sbjct: 274 FSPDWGGVLEALAEALHRIQVQQL 297 >gi|58580687|ref|YP_199703.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622621|ref|YP_449993.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578335|ref|YP_001915264.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425281|gb|AAW74318.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366561|dbj|BAE67719.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522787|gb|ACD60732.1| DNA polymerase III subunit gamma/tau [Xanthomonas oryzae pv. oryzae PXO99A] Length = 698 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGQC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDLSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARL-MQVVAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|21230460|ref|NP_636377.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769546|ref|YP_244308.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. campestris str. 8004] gi|21112024|gb|AAM40301.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574878|gb|AAY50288.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. campestris str. 8004] Length = 653 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + E ++ M D L + ++ K A A E Sbjct: 226 AYAGGALR----EDVVRTMLGTVDR---TQVGAMLQALSDGDGAQLLKVVAALA-----E 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRIQVQQL 297 >gi|15612597|ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] Length = 564 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 129/341 (37%), Gaps = 43/341 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G E I K L + HA LF G +G GK + A + Sbjct: 6 LYRVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + S ++ D + + + N VDEIR IR Sbjct: 66 QAPIAEPCNECRA------CKGITSGSIVDVMEIDAASNN---------GVDEIRDIRDH 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +FIL + I TI SRC Sbjct: 111 VKFAPSEVRYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L + L I D V AA G + ++ +L D+ IS Sbjct: 171 QRFDFKRISNDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLL----DQAIS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILK------------ 280 + + + + + + Q+ + + A + + + Sbjct: 227 FADERVTVEDVLAITGAVSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLI 286 Query: 281 ---EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 KAA + QL E QI + +L ++ S++ Sbjct: 287 YYYRDLMLFKAAPEASQLLERAQINDSFKTLAGEINDASLF 327 >gi|16273148|ref|NP_439385.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae Rd KW20] gi|260581148|ref|ZP_05848968.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae RdAW] gi|1169397|sp|P43746|DPO3X_HAEIN RecName: Full=DNA polymerase III subunit gamma/tau gi|1574159|gb|AAC22882.1| DNA polymerase III, subunits gamma and tau (dnaX) [Haemophilus influenzae Rd KW20] gi|260092176|gb|EEW76119.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus influenzae RdAW] Length = 688 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|78046683|ref|YP_362858.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035113|emb|CAJ22758.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 683 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + + D L + + N VD++R + Sbjct: 65 ETGTSADPCGTC------PACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLQSLADGDGARLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + + +L + +H + L Sbjct: 274 FSPDWSGVLEALAEALHRVQVQQL 297 >gi|304315581|ref|YP_003850726.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777083|gb|ADL67642.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 533 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 27/304 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + L +GR+ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +++L D + + + N +VD++R +R Sbjct: 65 NSVEGEPCNRC------QICESANNNSLIDIIEIDAASNN---------SVDDVRELRDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ +A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 110 IIYAPSICKYKVYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F + + + + ++ I + + GS+ AI IL Y+ Sbjct: 170 QRFDFKRIPSKVISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSYNDV 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 D++ + +++I D ++ K + + + +L I S A+ Sbjct: 230 LTYDDVCDILGTVNDDTLYTLVKRIND----RNAKEVINQIDKLMLYGIDVSNLIKAMLS 285 Query: 294 QLEE 297 L + Sbjct: 286 FLRD 289 >gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus JW 200] gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter ethanolicus JW 200] Length = 518 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 125/305 (40%), Gaps = 28/305 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I + L ++ HA LF G +G GK ++ +A V Sbjct: 5 LYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + ++ D L + + N +V+++R +R Sbjct: 65 NNKDGEPCNSC------EICQAINNNTTMDVLEIDAASNN---------SVNDVRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 110 VIYSPSIAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + + LE++ I + + + GS+ AI +L + Sbjct: 170 QRFDFKKIPTRLIAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +++ + E + + D + ++D + L + + I +L+ Sbjct: 230 LITYEDVCEMLGVANDEM----LFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLT 285 Query: 293 GQLEE 297 L + Sbjct: 286 YILRD 290 >gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106] gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106] Length = 683 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 130/347 (37%), Gaps = 42/347 (12%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G + I L+ GR+ A LF G +G GK + A + Sbjct: 9 KYRPQTFADLVGQDAIATTLTNAIHRGRIVPAYLFTGPRGTGKTSSARILAKSLNCLSTD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + + P C K + + + D + + + N VD IR + Sbjct: 69 EPTATPCGTC------AVCKGITNGSTLDVIEIDAASNT---------GVDNIRELIERA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDK 234 F + + + L E+ +I V A G + A +L + Sbjct: 174 RFDFRRIPLEPMVQHLQFIAEKEQIPITLEAIKMVAQIAQGGLRDAESLLDQLSLLAGEI 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEICKS 285 + DL+ + L+ ++ IA S++ D++ + + L+ + + Sbjct: 234 NVEQVWDLVGAVPERDLLELLKAIA----SENSTDIIDYIRQLLNRGREPLVVLQNLAEF 289 Query: 286 AKAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIFH 328 + ++ + + ++ + L + H + + + Q Sbjct: 290 YRDLLIAKTAPQRSDLVKLTQPTWEELCQFAHHWEIQTILAAQKYLR 336 >gi|153001132|ref|YP_001366813.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS185] gi|151365750|gb|ABS08750.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS185] Length = 1137 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 116/273 (42%), Gaps = 24/273 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL+++ + L + + + AA GS+ A+ + Sbjct: 197 CLQFNLKSLTQSEIGTQLNHILTQEQFPFEAEALKLLAKAANGSMRDALSLTDQAIAFGG 256 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLS 264 +++ ++ +++ + ++ + D + Sbjct: 257 GSVMLTQVQTMLGSIDEQHVVALLKALTDADIG 289 >gi|196251181|ref|ZP_03149856.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. G11MC16] gi|196209307|gb|EDY04091.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. G11MC16] Length = 559 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 41/324 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G E + K L ++ HA LF G +G GK + +A V Sbjct: 6 LYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + + + D L + + N VDEIR IR Sbjct: 66 HAPAAEPCNEC------PVCLGITNGMVPDVLEIDAASNN---------RVDEIRDIREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SRC Sbjct: 111 VKFAPTSVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + L+ + + D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFRRIPLSAIVSRLKYVANAQGVEASDEALSAIARAADGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG---Q 294 + + D++LS +F L +FI I + AA L Sbjct: 227 FSNGKLEV--------------DDVLSMTGAASFAALADFI-GAIYRKDTAAVLQQFETM 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMY 318 + + ++ L+ +Y Sbjct: 272 MAQGKDPNRLVEDLILYCRDLLLY 295 >gi|91775925|ref|YP_545681.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT] gi|91709912|gb|ABE49840.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT] Length = 572 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 130/338 (38%), Gaps = 35/338 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPKSFDELVGQEHVVRALTNALQQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D++ + + N VD++ + Sbjct: 65 ERGVSANPCGQCTA------CVAIDKGSFLDYVEMDAASNR---------GVDDMTSLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V M+D V + +A NA+LK+LEEPP V FIL + + TI SR Sbjct: 110 KAIYAPTQGRYKVYMLDEVHQLTGHAFNAMLKTLEEPPAHVKFILATTDPQKVPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 CL +S + + L+ Q I + +A GS+ A+ +L Y Sbjct: 170 CLQFNLRQMSSSGIAAHLQHVLTQENITFEPVALQLIGRSANGSMRDALSLLDQAIAYGG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQ---------IADELLSQDQKIAFDFLIEFILKEI 282 D + ++ Q Y + + +A +++ I+FD + + + Sbjct: 230 DSVNEKEVRTMLGAIDQAYLFELLNALLAQDGNALLAQARAMEERAISFDAALSDLANLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVH--AFSMY 318 + A A A+ + Q + R+ +Y Sbjct: 290 HEIAIAQAVPDSIAIDHPDRQTLLDIAARMRPEEIQLY 327 >gi|307544645|ref|YP_003897124.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM 2581] gi|307216669|emb|CBV41939.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM 2581] Length = 684 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 129/335 (38%), Gaps = 27/335 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E +++ L GR+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFHELVGQEHVQRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + D L + + K V++ R + Sbjct: 65 TAGGPGDEAVTSQPCGQCSNCQAIDQGRFVDLLEVDAASRTK---------VEDTRELLD 115 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 116 NVQYAPTQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPPTVLSR 175 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + + LE + +S + AA GS+ A+ + + + Sbjct: 176 CLQFTLKHMPPERIVGHLSMVLEAESVPFEESALWLLGKAAEGSMRDAMSLTDQAIAFGQ 235 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ + L ++ +A+ ++ +Q F +++ + + Sbjct: 236 GEVRHGDVAAMLGTLDHRHVLALIEALAEADAARLLAEVAALAEQGPDFAAVLDDVTAIL 295 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A A + L+ +L R A + Sbjct: 296 HRLAIAQMVPDALDNGHGDRDDLLALAARFTAEDI 330 >gi|229845044|ref|ZP_04465180.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 6P18H1] gi|229812016|gb|EEP47709.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 6P18H1] Length = 688 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|225163994|ref|ZP_03726282.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801408|gb|EEG19716.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 388 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 43/337 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G + + + L R+ HA LF G +G GK + +A + Sbjct: 8 VIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNC 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + DP P VK + D + + + N +VD+IR +R Sbjct: 68 TDGP------KADFDPADPAVKSITDGTSMDVIEIDGASNN---------SVDQIRDLRD 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ A NALLK+LEEPP+ V F+ + +L TI SR Sbjct: 113 DVRYAPTQGKFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSR 172 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C + ++ + K L Q+ KI + A G + A I Sbjct: 173 CQRFDLKPIPDDLIIKRLAQIGADEKINATPEALACIARMADGGMRDAQSIFDQMISFCG 232 Query: 232 CDKIISSYIDLIHIPRQEYAL-----------QKMQQIADELLSQDQKIAFDFLIEF--- 277 + + +D+ + E +++ +I D+ + + + L + Sbjct: 233 AEIAEADVLDVYGLVSTEQIAALAGAIAAGNHKELVRIIDDCDANGRDLV-RLLHDLQAS 291 Query: 278 ----ILKEICKSAKAAALSGQLEEADQIAQIYFSLVK 310 +L I + + L +Q+ ++ +L + Sbjct: 292 IRAALLDAIANNGRTTLLGNVPMTTEQVTRLLDALRE 328 >gi|32035419|ref|ZP_00135390.1| COG2812: DNA polymerase III, gamma/tau subunits [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207753|ref|YP_001052978.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae L20] gi|126096545|gb|ABN73373.1| DNA polymerase III subunit gamma/tau [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 688 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE Q I + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P + L + ++ L D + A + K I Sbjct: 226 AVSNANISLPIVQQMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 277 --------DWSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 326 >gi|77917989|ref|YP_355804.1| DNA polymerase III subunits gamma/tau [Pelobacter carbinolicus DSM 2380] gi|77544072|gb|ABA87634.1| DNA polymerase III, tau subunit [Pelobacter carbinolicus DSM 2380] Length = 582 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 135/349 (38%), Gaps = 41/349 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+HHA LF G +G+GK + +A + Sbjct: 5 VLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C +++++ D + + N VD+IR +R Sbjct: 65 EQGLSPQPCNVCQS------CREISAGQGLDVFEIDGASNT---------GVDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP+ FI + I TI SR Sbjct: 110 NIRYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L+++ I + V GS+ A D++I Sbjct: 170 CQRFDFRKIPLPLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTF----DQVI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLI---------EFILKEI 282 + D + + L + + + LL D + + +E+ Sbjct: 226 AFCGDAVGEDDVQGLLGMVDRRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCREL 285 Query: 283 CKSAKAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIF 327 ++ ++ + + E + + L + + +L+R + Sbjct: 286 VETLRSLVVLKVVPEPEALLDATPDELEELRRLSATVELEDLERAVTVL 334 >gi|217972946|ref|YP_002357697.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS223] gi|217498081|gb|ACK46274.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS223] Length = 1115 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 126/317 (39%), Gaps = 37/317 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L + + + AA GS+ A+ + Sbjct: 170 CLQFNLKSLTQGEIGTQLNHILTQEQFPFDAEALKLLAKAANGSMRDALSLTDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELL-------------SQDQKIAFDFLIEFI 278 + +++ ++ +++ + ++ + D + D + L+E + Sbjct: 230 GNVMLTQVQTMLGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELL 289 Query: 279 LKEICKSAKAAALSGQL 295 + AA L Sbjct: 290 HQITLTQFAPAAAQQSL 306 >gi|319655048|ref|ZP_08009118.1| DnaX protein [Bacillus sp. 2_A_57_CT2] gi|317393272|gb|EFV74040.1| DnaX protein [Bacillus sp. 2_A_57_CT2] Length = 565 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 137/359 (38%), Gaps = 51/359 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L ++ HA LF G +G GK + A V Sbjct: 6 LYRVWRPQQFIDVVGQEHVTKTLQNALLQEKISHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N V+EIR IR Sbjct: 66 KAPVTEPCNEC------AACRGITDGSIPDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V ++D V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPNAVKYKVYIVDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ D + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITAQAITGRMKLIADETGAAYEDQALQIIARAAEGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI-------------- 278 D + + + + ++A + +D FL E + Sbjct: 227 FSQDRVTVEDALSVTGAVSQGFLNKLARAVKDRDAASGLGFLEELLFQGKDPARFIEDFI 286 Query: 279 --LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A L LE + + + L + V +Y L +L+KA++ Sbjct: 287 LYYRDMLLYKAAPRLEESLERVM-LDEEFQQLAQEVEPEELYEL------IEVLNKAQQ 338 >gi|168240315|ref|ZP_02665247.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450868|ref|YP_002044517.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409172|gb|ACF69391.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339944|gb|EDZ26708.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 642 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|39995205|ref|NP_951156.1| DNA polymerase III subunits gamma and tau [Geobacter sulfurreducens PCA] gi|39981967|gb|AAR33429.1| DNA polymerase III, gamma and tau subunits [Geobacter sulfurreducens PCA] gi|298504210|gb|ADI82933.1| DNA polymerase III, gamma and tau subunits [Geobacter sulfurreducens KN400] Length = 579 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 137/352 (38%), Gaps = 38/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P ++ + D L + + N VD+IR +R Sbjct: 65 EQGMSPEPCNVC------PACTEITAGTSVDVLEIDGASNT---------GVDDIRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L ++ I D V GS+ ++ +L D+++ Sbjct: 170 CQRFDFRRIPLAKVVARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVL----DQVL 225 Query: 237 S---------SYIDLIHIPRQEYALQKMQQIADE-----LLSQDQKIAFDFLIEFILKEI 282 + + L+ + + L+ + L + F + + E+ Sbjct: 226 AFCGETVNDDDVVSLLGVVDRRLLLEASAAVLGRDTRSVLGVVARVDEFGYNMRQFCGEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA-FSMYNLDRRQMIFHLLSKA 333 + + + +A + + + ++ V S L+ Q +L +A Sbjct: 286 IDHFRNLTIMRAVGDAGDLLDLSEAELQSVREQASSALLEDLQRHMTILLRA 337 >gi|16759463|ref|NP_455080.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142765|ref|NP_806107.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162890|ref|ZP_03348600.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427143|ref|ZP_03359893.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213865424|ref|ZP_03387543.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25288577|pir||AG0562 DNA polymerase III chains gamma and tau [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501755|emb|CAD04969.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi] gi|29138397|gb|AAO69967.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 642 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|126174787|ref|YP_001050936.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS155] gi|125997992|gb|ABN62067.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS155] Length = 1147 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 125/317 (39%), Gaps = 37/317 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGACGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L + + + AA GS+ A+ + Sbjct: 197 CLQFNLKSLTQGEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAFGG 256 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELL-------------SQDQKIAFDFLIEFI 278 + +++ ++ +++ + ++ + D + D + L+E + Sbjct: 257 GNVMLTQVQTMLGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELL 316 Query: 279 LKEICKSAKAAALSGQL 295 + AA L Sbjct: 317 HQITLTQFAPAAAQQSL 333 >gi|78043423|ref|YP_361464.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus hydrogenoformans Z-2901] gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus hydrogenoformans Z-2901] Length = 511 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 138/348 (39%), Gaps = 48/348 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I K L + ++ HA LF G +G GK T A V Sbjct: 5 LYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + + +L + + + N +DEIR +R Sbjct: 65 HPVEGEPCNQC------PSCIGINNQSLLNVFEIDAASNR---------GIDEIRELRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L G ++V +ID V + A NALLK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 IKLVPAQGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S +++ L E+ K+ + A+ G + A+ ++ Sbjct: 170 QRFDFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPK 229 Query: 231 ----DCDKII-----SSYIDLIHIPRQEYALQKMQQIADELL-SQDQKIAFDFLIEF--- 277 D K++ ++LI R+ L+ + +IA+ + D K+ ++++ Sbjct: 230 ITVEDTLKVLGFVSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRY 289 Query: 278 ---------ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 + + + + + L E D++ ++ + + Sbjct: 290 LNLIKNGIEVEELMPEVLEKLRSEAALWEEDKLFLLWDDIARLEREVR 337 >gi|301169970|emb|CBW29574.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae 10810] Length = 688 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|194432687|ref|ZP_03064972.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012] gi|194418949|gb|EDX35033.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012] gi|332097008|gb|EGJ01992.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 155-74] Length = 643 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 130/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + P L + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTPAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|223939210|ref|ZP_03631092.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] gi|223892163|gb|EEF58642.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] Length = 609 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G E + + LS S R+ HA LF G +G GK T+ +A + Sbjct: 5 VIARKYRPQRFSDVVGQEHVSQTLSNAIASNRIAHAYLFVGPRGTGKTTIARIFAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +++ D L + + N ++EIR +R Sbjct: 65 TGGP------KVDFPDDDPRCQEITEGRSLDVLEIDGASNR---------GIEEIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T +++ +ID V + + A NALLK+LEEPP V F+ + +L TI SR Sbjct: 110 TVKYAPATSKFKIYIIDEVHMLTKEAFNALLKTLEEPPAHVKFMFATTEPEKVLPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + K L + K+ D + A G + A L D++I Sbjct: 170 CQRFDLRRIPSALITKHLAHISKLEKVKIDSGALDAIARGAEGGMRDAESTL----DQLI 225 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 S D I A ++ ++ +L+ +A L + Sbjct: 226 SFCGDKIEEADVLSMFGLTARGQILGLSKSILAGQADVALRELNDL 271 >gi|168818899|ref|ZP_02830899.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344020|gb|EDZ30784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 642 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRCVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|304407306|ref|ZP_07388959.1| DNA polymerase III, subunits gamma and tau [Paenibacillus curdlanolyticus YK9] gi|304343747|gb|EFM09588.1| DNA polymerase III, subunits gamma and tau [Paenibacillus curdlanolyticus YK9] Length = 597 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + G I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRAWRPQTFHDMVGQRHIIRTLQNAIREDRVSHAYLFNGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + D + + + N +DEIR IR Sbjct: 66 RGPAPEPCNECDA------CLGITAGTVMDVVEIDAASNR---------GIDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 111 VRYAPSEVRYKVYIIDEVHMLTTEAFNALLKTLEEPPGHVIFILATTEPHKLPPTIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F +S + L ++ I + ++ + G + AI +L + Sbjct: 171 QRFDFRQVSLEEQTERLRLICQEEGIEADEEALAYIARLSEGGMRDAIGLLEQSAAFGGE 230 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +I + +D+ A ++ ++A+ + ++ + + Sbjct: 231 RITLEGAVDV----TGGLAAEQFAKLAEAVRDRNAGAVLPLVEGLMQA 274 >gi|239623040|ref|ZP_04666071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522407|gb|EEQ62273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 549 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 78/335 (23%), Positives = 135/335 (40%), Gaps = 44/335 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + PV + + G + I + L S R+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C P K + S + + + + + N V+ IR IR Sbjct: 66 HPVDGSPCNEC------PTCKAIQSGSSMNVVEIDAASNN---------GVENIRDIRDQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYPPTEGRYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L +L I D ++ AA GS+ + +L D+ ++ Sbjct: 171 QRYDFKRISLETIGDRLRELTQAEHIEVEDRALMYIAKAADGSLRDGLSLL----DQCVA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF------------------LIEFIL 279 + + + AL+ + + + SQ + L +F+ Sbjct: 227 FHFG--KVLTYDNALEVLGAVDSSVFSQMFGAVVEGRTKDCICTLEEIVIQGRELGQFVN 284 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 I + L ++A+ + + +K++ Sbjct: 285 DFIWYM-RNLLLIQSADDAEGLLDMSEENLKQLRE 318 >gi|285017408|ref|YP_003375119.1| DNA polymerase III tau and gamma subunits protein [Xanthomonas albilineans GPE PC73] gi|283472626|emb|CBA15131.1| probable dna polymerase III tau and gamma subunits protein [Xanthomonas albilineans] Length = 611 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 40/344 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALTNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N VD++R + Sbjct: 65 EQGTSADPCGKC------AACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E + K L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEMQIQGQMTKILAAEQIEVDASAIVQLAKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ ++ ++G E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVGAMLDALVDADGARLLQV-VAGLAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 + + +L + +H + RQ++ + DL Sbjct: 274 FSPDWGGVLEALAETLHRIQV-----RQLVPGAALDTLDGLDLA 312 >gi|160878207|ref|YP_001557175.1| DNA polymerase III, subunits gamma and tau [Clostridium phytofermentans ISDg] gi|160426873|gb|ABX40436.1| DNA polymerase III, subunits gamma and tau [Clostridium phytofermentans ISDg] Length = 522 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L + R+ HA LF G +G GK T+ A V Sbjct: 6 LYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAKTVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + S + + + + + N VD IR I Sbjct: 66 HPIDGNPCNEC------AMCKAIQSQSSMNVIEIDAASNN---------GVDNIREIVEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKYSPTEGNYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + K L E+ I + +V AA GS A+ +L D+ I+ Sbjct: 171 QRYDFRRVTIDEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLL----DQCIA 226 Query: 238 SY 239 Y Sbjct: 227 FY 228 >gi|317120921|ref|YP_004100924.1| DNA polymerase III subunits gamma and tau [Thermaerobacter marianensis DSM 12885] gi|315590901|gb|ADU50197.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter marianensis DSM 12885] Length = 825 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 33/333 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P + G E + + L+ +GR+ HA LF G +G GK ++ A V Sbjct: 8 LYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNCL 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C +++ + D L + + N +DEIR +R Sbjct: 68 SPEGVEPCNRC------EVCREINDGSTMDVLEIDAASNR---------GIDEIRELRER 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 113 VRYAPARARYKVYIIDEVHMLTTEAFNALLKTLEEPPAHALFILATTEPHRLPATIVSRC 172 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F+ L+ + + L+ + + + + A G + A+ +L D Sbjct: 173 QRFDFHRLTPEQILERLQAVCTAMGVEAEPAALRLLARLAEGGLRDALSLLDQSLAMAGD 232 Query: 234 KIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDF------LIEFILKEICKSA 286 ++ + + DL+ + E L + + + + + + L + + + Sbjct: 233 RLDAQVVADLLGLAPGEGILALTRAVVEGDVGAGLQAVAELSAQGVDLAQALRDWVACWR 292 Query: 287 KAAALSGQLEEADQI---AQIYFSLVKRVHAFS 316 AL L+E + ++ L A Sbjct: 293 DLLALRAGLDERHLLYAGPELAGDLAPLARALD 325 >gi|229917436|ref|YP_002886082.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp. AT1b] gi|229468865|gb|ACQ70637.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp. AT1b] Length = 558 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 129/355 (36%), Gaps = 42/355 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G I + + RM HA LF G +G GK +L A + Sbjct: 6 LYRVYRPQSFQEVVGQVHITRTIQNALLEERMSHAYLFSGPRGTGKTSLAKIIAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C P + D + + N VDEIR IR Sbjct: 66 SAPTREPCNTC------PTCIAITEGTSPDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V ++ A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 111 VKYPPSQGRYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 + L + + + AA G + A+ +L D Sbjct: 171 QRFDVKRHEVSQLQTRMAYILNDQDHDYDPEALKLIARAADGGMRDALSLLDQALAFSDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQI----------ADELLSQDQKIAFDFLIEFILKEI 282 + +++ E L + EL+ ++ K F+ + + + Sbjct: 231 RLTEEAVLEVTGAVTDETLLDMAYGLQRKELNVILSTLELMLREGKDLKRFIEDLVF--V 288 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + A S Q + + A+ + V A S L F ++ + +C Sbjct: 289 HRDALLLKASPQAADLLERARPTDEFRQFVEATSTDEL------FQVIEELNDCQ 337 >gi|145634442|ref|ZP_01790152.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittAA] gi|145268422|gb|EDK08416.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittAA] Length = 688 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|56961819|ref|YP_173541.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus clausii KSM-K16] gi|56908053|dbj|BAD62580.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus clausii KSM-K16] Length = 560 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 24/284 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I K L ++ HA LF G +G GK + A + Sbjct: 6 LYRVWRPQLLEDVVGQSHITKTLKNALLQQKLAHAYLFSGPRGTGKTSAAKIVAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + ++ D + + + N VDEIR IR Sbjct: 66 QAPVAEPCNECDA------CVGITNGSVVDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKFAPSEVAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPLTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 F +S L ++ + + + + + AA G A+ +L D+ Sbjct: 171 QRFDFKPISNEALINRMKFILDNNQQPYEEEAIELIARAADGGARDALSLLDQAISFSDE 230 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +S+ D++ I + + + Q+A L Q+ ++ + + E + Sbjct: 231 KVST-EDVLTIT-GAVSREALHQLAAALEKQNARLVLETIDETL 272 >gi|118594959|ref|ZP_01552306.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181] gi|118440737|gb|EAV47364.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181] Length = 544 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 119/284 (41%), Gaps = 33/284 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + ++ R+HHA LF G +GIGK T+ A + Sbjct: 5 VLARKWRPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++ D + L + N VD + + Sbjct: 65 EQGISSKPCLTCSA------CQEIDVGRYVDLIELDAASNT---------GVDNMIDLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++G ++V +ID V ++++A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 110 NAQYAPSSGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ N+ L + KI + AA GS+ A+ IL D+ I Sbjct: 170 CLQFNLKQMTTENIASHLTSILTEEKIGSESGAIQIIAKAANGSMRDALSIL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + I +++ L + + I FD + I K Sbjct: 226 AYSSEKIST----------EKVTQMLGTIEDDILFDIIKHLIDK 259 >gi|145639210|ref|ZP_01794817.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittII] gi|145271772|gb|EDK11682.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittII] gi|309750786|gb|ADO80770.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae R2866] Length = 688 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|167623521|ref|YP_001673815.1| DNA polymerase III subunits gamma and tau [Shewanella halifaxensis HAW-EB4] gi|167353543|gb|ABZ76156.1| DNA polymerase III, subunits gamma and tau [Shewanella halifaxensis HAW-EB4] Length = 930 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 40/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGVTATPCGKCSA------CVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L Q ++ D+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQDEIATQISHILSQEQLSFEDAALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLSQDQKIAFDFLI------------EFILKEI 282 + + + + + L + + + L + + D + E +L+ + Sbjct: 226 AFGAGQVKLEQVQTMLGSIDEKHVLALLEALAKADIMDLMQVTAKVLSFGADPEEVLRSL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + L+ A Q++ + S ++ Q+ + LL R+ Sbjct: 286 LELLHQITLTQFAPAAAQMSLYSEQISAFAQQLSA---EQVQLYYQLLLTGRK 335 >gi|331661852|ref|ZP_08362775.1| DNA polymerase III subunit tau [Escherichia coli TA143] gi|331060274|gb|EGI32238.1| DNA polymerase III subunit tau [Escherichia coli TA143] Length = 526 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDIEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|283796874|ref|ZP_06346027.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1] gi|291075280|gb|EFE12644.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1] gi|295089888|emb|CBK75995.1| DNA polymerase III, subunits gamma and tau [Clostridium cf. saccharolyticum K10] Length = 555 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + PV + G + I K L SGR+ HA LF G +G GK ++ +A V Sbjct: 6 LYRKWRPVSFGDVKGQDPIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + + + + + + N V+ IR IR Sbjct: 66 HPVDGSPCNEC------ETCRHIMEGSSLNVVEIDAASNN---------GVENIREIREQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VQYPPTEGTYRVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F +S + + L +L I + +V AA GS+ A+ +L Sbjct: 171 QRYDFKRISLDTIADRLRELTEAEHIGVEERALRYVAKAADGSMRDALSLLDQ 223 >gi|197247588|ref|YP_002145467.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211291|gb|ACH48688.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 642 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|149182697|ref|ZP_01861164.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1] gi|148849607|gb|EDL63790.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1] Length = 565 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 35/318 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L ++ HA LF G +G GK + A V Sbjct: 6 LYRVWRPQQFIDVVGQQHVTKTLQNALLQQKISHAYLFSGPRGTGKTSAAKILAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + ++ D + + + N V+EIR IR Sbjct: 66 RAPVAEPCNECDS------CLGITDGSIPDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPNVVSYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + + + + V AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITARDIVGRMTHIADESGVQYEEKALHVVARAAEGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + + + AL ++ L++ K F+ + + AL L + Sbjct: 227 FSQDRVTV---DDALTVTGAVSQVYLNRLAKAIFE---NQVADAL------QALEELLFQ 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 A++ LV Sbjct: 275 GKDPARLTEDLVLYFRDM 292 >gi|168237601|ref|ZP_02662659.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735928|ref|YP_002113515.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711430|gb|ACF90651.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289588|gb|EDY28951.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 642 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|167550989|ref|ZP_02344745.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168231475|ref|ZP_02656533.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261077|ref|ZP_02683050.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194471215|ref|ZP_03077199.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262082|ref|ZP_03162156.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389464|ref|ZP_03216075.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224582321|ref|YP_002636119.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194457579|gb|EDX46418.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197240337|gb|EDY22957.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601909|gb|EDZ00455.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205324245|gb|EDZ12084.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334143|gb|EDZ20907.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349826|gb|EDZ36457.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466848|gb|ACN44678.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084759|emb|CBY94549.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 642 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|56414361|ref|YP_151436.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363281|ref|YP_002142918.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128618|gb|AAV78124.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094758|emb|CAR60291.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 642 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEGLLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|313890779|ref|ZP_07824404.1| DNA polymerase III, subunit gamma and tau [Streptococcus pseudoporcinus SPIN 20026] gi|313120880|gb|EFR43994.1| DNA polymerase III, subunit gamma and tau [Streptococcus pseudoporcinus SPIN 20026] Length = 560 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 130/318 (40%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + + L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ +N++ L + +I ++ D + A G + A+ IL Sbjct: 170 QRFEFKSIKQNDISSHLAWILETEEIPYQEAALDLIARRAEGGMRDALSILDQALSLSSE 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +DL IA+E+ A D + + ++A + L+ + Sbjct: 230 NQVDL--------------AIAEEITGSISLAALDTYVLNLSHHDAQAA-LSDLATIFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|227115284|ref|ZP_03828940.1| DNA polymerase III subunits gamma and tau [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 690 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 129/333 (38%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFTHVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LEQ ++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +S ++ E L ++ +A +Q DQ A E +L E Sbjct: 230 GQVTTASVSQMLGTLDDEQPLALIEALAKGDGAQVMSLLDQVAARGVDWESLLVETQTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D A + + + A Sbjct: 290 HRIAMVQLLPAALGDDYAAVESRMRELARALPP 322 >gi|148827061|ref|YP_001291814.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittGG] gi|148718303|gb|ABQ99430.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittGG] Length = 688 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|326562873|gb|EGE13160.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 46P47B1] gi|326570998|gb|EGE21022.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis BC7] Length = 748 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + A GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GRIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|90407634|ref|ZP_01215814.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3] gi|90311225|gb|EAS39330.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3] Length = 784 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 46/358 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + LS R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPHNFSEVIGQEHVLTALSNGLTQNRVHHAYLFSGTRGVGKTSIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C F + + D L + + K VD+ R + Sbjct: 65 EQGVTATPCGQC------EFCLAIDAGHFVDLLEIDAASRTK---------VDDTREMLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPTVGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + K L+Q + + + AA GS+ A+ + Sbjct: 170 CLQFHLKALLPEQIEKQLRYILDQEQATFDGASLTAIANAADGSMRDALSLTDQ-ALAFG 228 Query: 237 SSYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 S +I+ + + + + + + S D + F + EF+ Sbjct: 229 SGHIEYQAVLKMLGTIDNHHLHYLLHFIASGDVEKVFAKIQEFV---------------- 272 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNL-----DRRQMIFHLLSKARECNDLYFRDFYAI 347 A+++ L H ++ + D ++ L + +L + +Y I Sbjct: 273 -HLGADFAKLHQELATLCHQTALLQMLNRPHDVKKSTLQLFADRLSAEEL--QLYYQI 327 >gi|295094180|emb|CBK83271.1| DNA polymerase III, subunits gamma and tau [Coprococcus sp. ART55/1] Length = 548 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 119/285 (41%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK ++ +A Sbjct: 6 LYRKWRPDTFDEVKGQDHIVTTLRNQIKNDRLGHAFLFCGTRGTGKTSIAKIFAKACNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + ++ + + + + + N VD IR+IR Sbjct: 66 HPVDGSPCNECAS------CRAISDGSSLNVIEIDAASNN---------GVDNIRQIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + S I TI SRC Sbjct: 111 VAYPPTEGKYKVYIIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + + LE+L + D++ + GS+ A+ IL + Sbjct: 171 QKYDFRRIPVDVISDRLEELMNREGLDADKKAIDYIAKSGDGSMRDALSILDQCVAFNLG 230 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + D + + ++ + +L D + A D + E + + Sbjct: 231 QKLTYDNVLETIGAVDIDTFARLLECVLESDVEHAIDVVDEVVWQ 275 >gi|204930489|ref|ZP_03221419.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320423|gb|EDZ05626.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 642 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|198243935|ref|YP_002214437.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855963|ref|YP_002242614.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197938451|gb|ACH75784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206707766|emb|CAR32051.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622184|gb|EGE28529.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 642 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|62179095|ref|YP_215512.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126728|gb|AAX64431.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713556|gb|EFZ05127.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 642 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|253698849|ref|YP_003020038.1| DNA polymerase III subunits gamma/tau [Geobacter sp. M21] gi|251773699|gb|ACT16280.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M21] Length = 579 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 29/330 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + N VD+IR +R Sbjct: 65 ESGLTVEPCNTC------STCLEITEGNSVDVFEIDGASNT---------GVDDIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V + NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NIKYLPSRSRYKIFIIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F ++ + L +Q + D V GS+ ++ L Sbjct: 170 CQRFDFKRIALPRIVSRLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-----ELLSQDQKIAFDFLIEFILKEICKSA 286 + L+ + + + + + L Q +F + + +E+ Sbjct: 230 NQVADADVAALLGVVDRRLIMDGCRAVLSKEVRCALQIVAQVDSFGYSMRQFCRELIDQF 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 + A+ + E + ++ + + + + Sbjct: 290 RNVAILKAIGEPGDLLELSEAELGELRTLA 319 >gi|254283726|ref|ZP_04958694.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium NOR51-B] gi|219679929|gb|EED36278.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium NOR51-B] Length = 672 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 134/352 (38%), Gaps = 39/352 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + + L + R+HHA LF G +G+GK T+ A + Sbjct: 88 VLARKWRPGNFQEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAKCLNC 147 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S P C+ ++A D L + + K V++ R + Sbjct: 148 DQGVSSTPCGTCDS------CLEIAEGRSVDLLEVDAASRTK---------VEDTRELLE 192 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP F+L + + +T+ SR Sbjct: 193 NVLYAPTRSRFKIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSR 252 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + LE+ + + + AA GS+ A+ + D+ I Sbjct: 253 CLQFNLKNMVPEEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSL----TDQAI 308 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 + L ++ + D +L D K + + L ++ Sbjct: 309 GFGDGGLAESDVRAMLGTVDRARVLDVLDAILDNDPKTLLAVIEQIASHAPDYVATLDDL 368 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 ++ + +A + +V A + D Q+ + + R Sbjct: 369 ASVLHQVTIAQWVPDAADPTASQSERIAKVAASTTV--DEVQLFYQFAAAGR 418 >gi|34497065|ref|NP_901280.1| DNA polymerase III subunits gamma and tau [Chromobacterium violaceum ATCC 12472] gi|34102922|gb|AAQ59286.1| DNA polymerase subunits gamma and tau [Chromobacterium violaceum ATCC 12472] Length = 639 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 33/331 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS R+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +Q+ S D L + + N +D IR + Sbjct: 65 ETGTTAEPCGECQA------CRQIDSGRFVDLLEIDAASNT---------GIDNIREVLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTMGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L I + AA GS+ A +L Sbjct: 170 CLQFSLRNMTPQQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAYGL 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQI---------ADELLSQDQKIAFDFLIEFILKEI 282 + ++ + Y +Q + A+ ++ ++FD + + + Sbjct: 230 GEVKEDGVRAMLGAVDRRYLFTLLQALAASDGPALMAEADRLAERGVSFDSALSELAVLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A A + L + F+L + Sbjct: 290 QQLALAQTVPAALAADEPERDTLFALADAIA 320 >gi|320104515|ref|YP_004180106.1| DNA polymerase III subunits gamma and tau [Isosphaera pallida ATCC 43644] gi|319751797|gb|ADV63557.1| DNA polymerase III, subunits gamma and tau [Isosphaera pallida ATCC 43644] Length = 662 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 129/311 (41%), Gaps = 28/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS R+ HA LF G +G+GK ++ +A + Sbjct: 23 VVARRYRPQSFADVVGQDHVVRALSNAIIHHRVTHAYLFCGTRGVGKTSMARIFAKCLNC 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P ++C+ + ++ D + + + N VD +R +R Sbjct: 83 ERGPTVEPCQVCD------ICRAISVGQDVDVIEIDGASNN---------GVDAVRELRQ 127 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L + +++ ID V + A NALLK+LEEPP+ V FI + + I T+ SR Sbjct: 128 NAGLRPSRARYKIYYIDEVHMLTTGAFNALLKTLEEPPEHVKFIFATTEAHKIPITVLSR 187 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F S++ + + ++L ++ I V A GS+ A +L ++++ Sbjct: 188 CQRYDFASITPDTIQQSLAAICQREGIAAESEALRVVARRASGSMRDAQSLL----EQLL 243 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 SS ++++H + +I D L Q A + + + +L Sbjct: 244 SSGQSPLTVEMVHQLLGTPDDELTLEILDALAGQRAGEALCLFDQAAGRGVQALDLINSL 303 Query: 292 SGQLEEADQIA 302 L + +A Sbjct: 304 MDALRDVMTLA 314 >gi|290510163|ref|ZP_06549533.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55] gi|289776879|gb|EFD84877.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55] Length = 386 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|1527142|gb|AAC97558.1| DNA polymerase III gamma subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 430 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 34/331 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQASSSGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQL-EEADQIAQIYFSLVKRV 312 + A L + I Q L + V Sbjct: 290 HRIAMVQLSPAALGSDMAAIEQRMRELCRTV 320 >gi|309972967|gb|ADO96168.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae R2846] Length = 689 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|161609280|ref|NP_887984.2| DNA polymerase III subunits gamma and tau [Bordetella bronchiseptica RB50] Length = 698 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + + L+ + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + D L S D E ++ + + A L Sbjct: 226 AYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADL 285 Query: 292 S-------------GQLEEADQIAQIYFSLVKRVH 313 + G L + D + + L +H Sbjct: 286 AVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH 320 >gi|302669596|ref|YP_003829556.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio proteoclasticus B316] gi|302394069|gb|ADL32974.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio proteoclasticus B316] Length = 533 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 72/348 (20%), Positives = 136/348 (39%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L S R+ HA LF G +G GK ++ A V Sbjct: 6 LYRKFRPPVFEDVKGQDHIVTTLKNQIKSDRVGHAYLFCGTRGTGKTSVAKILARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C +++A+ + + + + N VD +R I Sbjct: 66 NPVDGSPCGQC------EMCREIAAGNSMNVIEIDAASNN---------GVDNVREIIDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S + G +V +ID V ++ A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 111 VSYSPTKGKKKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEVQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL------HYD 231 F+ ++ + + L + I D +V A GS+ ++ +L +Y Sbjct: 171 QRYDFHRITIDTIEARLREVVDAEGIKVEDRALRYVAKTADGSMRDSLSLLDQCIAFNYG 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 + ++++ E + + + ++ + D +I+ + + Sbjct: 231 EELTYDKVLNVLGAVDTEVFSRLFSALYTQDINGALTLLADIVIQGRELSQFVNDFVWYL 290 Query: 287 KAAALSGQLEEADQIAQIYFS-LVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L ++ + + I LV S ++D + S+ Sbjct: 291 RNLMLVQASDQMEDVIDISSDNLVALKEQASTADIDTILRYIRVFSEL 338 >gi|229846868|ref|ZP_04466975.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 7P49H1] gi|229810357|gb|EEP46076.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 7P49H1] Length = 688 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKTIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|145299061|ref|YP_001141902.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida subsp. salmonicida A449] gi|142851833|gb|ABO90154.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida subsp. salmonicida A449] Length = 865 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ +++ D L + + K V++ R + Sbjct: 65 EQGISSHPCGVCDT------CREIDQGNFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL + + K LE Q + AA GS+ A+ + D+ + Sbjct: 170 CLQFHLKSLDQTQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSL----TDQAL 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIA-------------FDFLIEFI 278 + + + L + + Q+ + +L QD FD L + Sbjct: 226 AHGNGSVRLESVLAMLGTLDHRHLHQLLEAILRQDAAATMAKITEIATLGPDFDQLHAEL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + + A A L ++E A+ L + + Sbjct: 286 EGLLHRVAMAQLLPATVQEQGADAESLLQLAQAM 319 >gi|323976046|gb|EGB71139.1| DNA polymerase III [Escherichia coli TW10509] Length = 643 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 130/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S L+ L + + + ++ + + + E + I A + Sbjct: 226 ASGDGLVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMSLINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|119945937|ref|YP_943617.1| DNA polymerase III, subunits gamma and tau [Psychromonas ingrahamii 37] gi|119864541|gb|ABM04018.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Psychromonas ingrahamii 37] Length = 774 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 124/335 (37%), Gaps = 45/335 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Q + G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLHHAYLFSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D L + + K VD+ R + Sbjct: 65 EKGVTATPCGAC------VHCQAIDQGRFVDLLEIDAASRTK---------VDDTREMLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYKPAQGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL ++ + L + + + AA GS+ A+ + Sbjct: 170 CLQFHLKAILPQEIETQLAYILNHEQATFEHAALTVIATAAEGSMRDALSLTDQALAFGS 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S + ++ + + IA S + F + EF+ Sbjct: 230 GHIAYQSVLKMLGSIDNNHLHYLLHFIA----SGNVSKVFLKIDEFV------------- 272 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 A ++ +L H ++ + +Q + Sbjct: 273 ----HLGADFAMLHQTLASLCHEIALSQMQPKQNV 303 >gi|238911386|ref|ZP_04655223.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 642 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMLLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|16763864|ref|NP_459479.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990471|ref|ZP_02571571.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168465581|ref|ZP_02699463.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|20141409|sp|P74876|DPO3X_SALTY RecName: Full=DNA polymerase III subunit tau; Contains: RecName: Full=DNA polymerase III subunit gamma gi|16418992|gb|AAL19438.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195631598|gb|EDX50118.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205330903|gb|EDZ17667.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245766|emb|CBG23563.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992201|gb|ACY87086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157093|emb|CBW16577.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911516|dbj|BAJ35490.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226062|gb|EFX51113.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128803|gb|ADX16233.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 642 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|205351792|ref|YP_002225593.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271573|emb|CAR36393.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626828|gb|EGE33171.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 642 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|253682734|ref|ZP_04863530.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str. 1873] gi|253561056|gb|EES90509.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str. 1873] Length = 541 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 130/327 (39%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L + R+ HA LF G +G GK + ++ V Sbjct: 6 LYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K++ + D + + + K VD+IR + Sbjct: 66 NPQDGEPCNECD------MCKKINAGLAIDVSEMDAASHNK---------VDDIRDLIEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D + + A NA LK+LEEPP+KV+FIL + + TI SRC Sbjct: 111 VKYPPREGKYKVYIMDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++++ L ++ I + + + G++ A+ IL + Sbjct: 171 QRFDFKRIKSDDIFERLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAK 287 I+++ + + L+ I D+ + +I D + I +K++ + Sbjct: 231 KVDYDQVINMLGLVTNDNLLKLTNTIIDKDIENSIRIIDDVVYAGKDINLFIKDMIHHMR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 + + + + + + + Sbjct: 291 NLMMVKVSQNPEDVLDMSEENINFLKE 317 >gi|188534599|ref|YP_001908396.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99] gi|188029641|emb|CAO97520.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99] Length = 644 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 74/358 (20%), Positives = 142/358 (39%), Gaps = 38/358 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L ++ + LE KI + AA GS+ A+ + Sbjct: 170 CLQFHLKALDQDQIRGQLEHVLQAEKIDAETRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ D++ E L ++ + +Q + + ++ L+ + + Sbjct: 230 GQVTTATVNDMLGTLDDEQPLALIEALVHADGTQVMALLNQAAARGVEWEALLVEMTTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 + A L L +D +A I L + ++ Q+ + L R+ L Sbjct: 290 HRVAMIQLLPSAL--SDDMAAIAQRLRELARVLPPADV---QLYYQTLLVGRKELSLA 342 >gi|319896923|ref|YP_004135118.1| DNA polymerase iii/DNA elongation factor iii, tau and gamma subunits [Haemophilus influenzae F3031] gi|317432427|emb|CBY80782.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus influenzae F3031] Length = 688 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIISALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I D + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|297516879|ref|ZP_06935265.1| DNA polymerase III subunits gamma and tau [Escherichia coli OP50] Length = 435 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|171463390|ref|YP_001797503.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192928|gb|ACB43889.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 558 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 33/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R++ P L G + + K L+ GR+HHA LF G +G+GK T+ A + Sbjct: 6 LARSWRPKTFSELVGQDHVVKALTHALDQGRLHHAWLFTGTRGVGKTTIARIMAKALNCT 65 Query: 62 P-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P C P ++ + D++ + + N VD+I Sbjct: 66 GADGSGKMTSEPCGKC------PACMEIDAGRFVDYIEMDAASNR---------GVDDIA 110 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + + G ++V +ID V + +A NA+LK+LEEPP+ V FIL + I T Sbjct: 111 SLLEKAAYAPSNGRYKVYVIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 Query: 177 IRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----L 228 I SRCL + + + LE+ K+ + + AA GS+ A+ + + Sbjct: 171 ILSRCLQFNLKQMPVPLIVEHLEKVLASEKMEYEVNALRVLAKAAQGSMRDALSLTDQAI 230 Query: 229 HYDCDKII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 Y K+I S ++ Y + +I D L+++D E + + S Sbjct: 231 AYAAGKVIEESVRGMLGTLDDAYLI----RILDCLIAKDGASLLSVANEMGERSMFFSLA 286 Query: 288 AAALSGQLEEAD 299 LS L++ Sbjct: 287 LQDLSSLLQKIA 298 >gi|226939891|ref|YP_002794964.1| DnaX [Laribacter hongkongensis HLHK9] gi|226714817|gb|ACO73955.1| DnaX [Laribacter hongkongensis HLHK9] Length = 769 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 127/335 (37%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS R+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPRRFADLVGQEHVVRALSNALAGQRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +Q+ + D L + + N +D IR + Sbjct: 65 ERGVGAEPCGEC------AACRQIDAGRFVDLLEIDAASNT---------GIDNIREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 110 NAQYAPTAGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CD 233 CL +++ + L I + AA GS+ A+ +L + Sbjct: 170 CLQFALRNMTPQQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLLDQAIAYGE 229 Query: 234 KIISS--YIDLIHIPRQEY---------------ALQKMQQIADELLSQDQKIAFDFLIE 276 ++ ++ + Y L + +++A + D A + L + Sbjct: 230 GVVREDGVRAMLGAVDRRYLFTLLAALADGDGAAVLDEARELAARGIGFD--AALEELAQ 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + A A++ E + +A + S+ Sbjct: 288 LFYQIALMQAVPQAIADDEPEREALAALAGSMAPE 322 >gi|326560228|gb|EGE10616.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 7169] Length = 748 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 152/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + A GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQ--------QIADELLSQ-----DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I+ + + D FD LI+ I Sbjct: 232 GQIQTDTVLSMLGLVNRTDVLEIIETVYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|307312153|ref|ZP_07591789.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W] gi|306907655|gb|EFN38157.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W] Length = 437 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|194364635|ref|YP_002027245.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas maltophilia R551-3] gi|194347439|gb|ACF50562.1| DNA polymerase III, subunits gamma and tau [Stenotrophomonas maltophilia R551-3] Length = 681 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 77/329 (23%), Positives = 132/329 (40%), Gaps = 45/329 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N VD++R + Sbjct: 65 EQGTSADPCGQC------AACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKYKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEEIEADGSALVQLAKAADGSLRDGLSLL----DQAI 225 Query: 237 SSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + D++ ++ + D L D + AAL Sbjct: 226 AYAGGALREDVVRTMLGTVDRTQVAAMLDALAEGDGPRLLQVV--------------AAL 271 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + E + + + +L + +H + L Sbjct: 272 A---EFSPDWSGVLEALAEGLHRIQVQQL 297 >gi|77166051|ref|YP_344576.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707] gi|254436358|ref|ZP_05049864.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus oceani AFC27] gi|76884365|gb|ABA59046.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Nitrosococcus oceani ATCC 19707] gi|207088048|gb|EDZ65321.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus oceani AFC27] Length = 529 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 28/285 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + + L+ GR+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + D + + + VD+ R + Sbjct: 65 KEGVRSTPCGKCQN------CQAIDGGNFVDLIEVDAASRT---------GVDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G+++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGHYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + LE +I + AA GSV A+ +L D+ I Sbjct: 170 CLQFNLRRITPKAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIE 276 + + + L ++Q + D LL+ + + + + E Sbjct: 226 NYGRGQVMVADVRTMLGSIEQGDLFILLDALLAGNGQGLIEKVRE 270 >gi|145641123|ref|ZP_01796704.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] gi|145274284|gb|EDK14149.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 22.4-21] Length = 688 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|330427296|gb|AEC18630.1| DNA polymerase III, delta' subunit [Pusillimonas sp. T7-7] Length = 636 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 74/349 (21%), Positives = 144/349 (41%), Gaps = 43/349 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFETLIGQDHVVRALTHALSTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D++ L + N VDE+ ++ Sbjct: 65 ETGITATPCGHCQA------CTEIDAGRFVDYVELDAASNR---------GVDEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGSGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ ++ L+ Q + + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMTAESIVAHLQEVLGQESMQYETPALRLLAQAASGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQI-----------ADELLSQDQKIAFDFLIEFILK 280 + S + ++ Q++ + ++ + ADEL ++ +++ + + Sbjct: 230 GNLTSEAVQGMLGTIDQQHLVILLRALAAGSAAQVLSVADELATRG--LSYSGALADLAV 287 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + A + G + D +A L +H D+ Q+ + + Sbjct: 288 LLSRVAIQQRIPGTIAADDPLADDIAQLATVLH------PDQTQLFYSV 330 >gi|68250239|ref|YP_249351.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 86-028NP] gi|68058438|gb|AAX88691.1| DNA polymerase III subunit gamma/tau [Haemophilus influenzae 86-028NP] Length = 688 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKTIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753] gi|156867274|gb|EDO60646.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753] Length = 564 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 71/358 (19%), Positives = 132/358 (36%), Gaps = 32/358 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L +GR+ HA LF G +G GK T A V Sbjct: 7 VLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAVNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + ++ D + + + N V+ IR +R Sbjct: 67 LSLKEGDPCGECES------CVGIDNGSVMDVVEIDAASNN---------GVENIRNLRE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S T +RV +ID V ++ A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 112 EASFTPAAAKYRVYIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSR 171 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F+ + + L+ + + A G + A+ +L + Sbjct: 172 CQRFDFHRIDPEVIADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSS 231 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKSAK 287 ++++ + +AD +L Q+ A + + E + +E+ + Sbjct: 232 EITLEVVSETAGLAGRDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFR 291 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVH-AFSMYNLDRRQMIFHLLSKARECNDLYFRDF 344 L ++ + + +++ + L H + + + FR F Sbjct: 292 NLMLLKTMKNPQNLIVVSQDEYQKLQVQAEAFTL---AGTIHAIDVLQAAKERMFRGF 346 >gi|161615318|ref|YP_001589283.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364682|gb|ABX68450.1| hypothetical protein SPAB_03088 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 642 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 136/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKVLDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|229816118|ref|ZP_04446433.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM 13280] gi|229808302|gb|EEP44089.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM 13280] Length = 451 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 130/321 (40%), Gaps = 32/321 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + G + I L GR+ HA LF G +G GK T+ A +L Sbjct: 4 LYRKYRPLTFESVVGQQHIVSTLEHAVAEGRLSHAYLFCGPRGTGKTTMARILAKALLCE 63 Query: 62 PDFSKAPVRM--CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-I 118 CNPD P +A D L + VD +R I Sbjct: 64 KAEGARAAGATGCNPDGTCPECTAIAEGTHPDVYELDAASRT---------GVDNVREEI 114 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +S G ++V +ID V + A NALLK+LEEPP V+F+L + IL TI Sbjct: 115 INSVSFAPVRGAYKVYIIDEVHMLTTQAFNALLKTLEEPPSHVIFVLCTTDPQKILETIL 174 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F+ +S +++ L EQ + + V A G + A+ L Sbjct: 175 SRCQRFDFHRISNDDIIGRLRYICEQEGFAFDEEALEVVARHARGGMRDALSTLEQ---- 230 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 +S + D R + A + ++A +LS+ F + +++ + Q Sbjct: 231 -LSVFGD--GSVRIDDARALLGEVASTVLSE-------FACKMAVRDTV--GLFGLIRAQ 278 Query: 295 LEEADQIAQIYFSLVKRVHAF 315 ++E + + ++ L+ + Sbjct: 279 VDEGNDLQELTRDLIAHIRDV 299 >gi|326565235|gb|EGE15420.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis 12P80B1] Length = 748 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 7 VLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGMTSQPCGVCDT------CISIDQGRFLDLIEIDAASRTK---------VEDTRELLE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+ + + TI SR Sbjct: 112 NVPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + ++L K L+ KI ++ + A GSV A+ + + + Sbjct: 172 CLQFVLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAFGG 231 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQI-------ADELLSQ------DQKIAFDFLIEFI 278 +I + + ++ + + L+ ++ I +L++ D FD LI+ I Sbjct: 232 GRIQTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCI 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + L E+A QI ++ ++ D Q+ + +L K+R+ Sbjct: 292 HQMALMQVLPDIPLDMNDEQAHQIKRLSSAISS----------DILQLYYEILIKSRDGI 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 RLASTPMQAL 351 >gi|325680624|ref|ZP_08160166.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8] gi|324107694|gb|EGC01968.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8] Length = 534 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 122/313 (38%), Gaps = 28/313 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + I L G+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPKTFDDVVSQPHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L D + + + N +V++IR +R Sbjct: 65 HGKDGMPCCEC------EICKAADNGSLGDIIEIDAASNA---------SVNDIRELREG 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T +++ +ID V ++ A NALLK++EEPP V FIL + + +TI SRC Sbjct: 110 VMFTPEMCKYKIYIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 FN + ++ L Q + + + + G + A+ +L D Sbjct: 170 QHFDFNRIKTEDIVARLSYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDD 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF-----LIEFILKEICKSAKA 288 + + + I ++Y ++ IAD+ + K + ++ + E+ + + Sbjct: 230 ITLDTVSNASGIAGRDYLFDILESIADKNAVEALKKISELHAMSKDLKVLAGELLEQMRN 289 Query: 289 AALSGQLEEADQI 301 L+ ++ + Sbjct: 290 VMLAATIDNGKDL 302 >gi|237730453|ref|ZP_04560934.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2] gi|226905992|gb|EEH91910.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2] Length = 642 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 128/325 (39%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILKEEHIAHEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + + +++ D + + + + I A + Sbjct: 226 ASGDGQVSTEAVSTMLGTLDDDQALSLVEAVVAADGERVMALVNDAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFS 316 S L + +L + A Sbjct: 286 SALLHRIAMVQLSPAALGSDMAAIE 310 >gi|89100953|ref|ZP_01173799.1| DnaX [Bacillus sp. NRRL B-14911] gi|89084324|gb|EAR63479.1| DnaX [Bacillus sp. NRRL B-14911] Length = 564 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 146/356 (41%), Gaps = 45/356 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L + HA LF G +G GK + A V Sbjct: 6 LYRVWRPQQFIDVVGQEHVTKTLQNALLQQKASHAYLFSGPRGTGKTSAAKILAKTVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + ++ D + + + N V+EIR IR Sbjct: 66 RAPISEPCNECDS------CIGITNGSIPDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V ++D V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKYAPSAVKYKVYIVDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 F ++ ++ ++ + + ++ V AA G + A+ +L D Sbjct: 171 QRFDFKRITAQSIVGRMKMIVDETGVQYEENALHIVARAAEGGMRDALSLLDQAISFSQD 230 Query: 234 KIISS------------YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-- 279 K+ + +++ + E + + LL Q + + F+ +FIL Sbjct: 231 KVTAEDALTVTGAVSQGFLNKLSRNVMEKDAAGALEALETLLFQGKDPS-RFIEDFILYY 289 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ A +L LE + + + +L + + +Y+L +L+KA++ Sbjct: 290 RDMLLYKAAPSLDESLERVM-LDEEFKALAEEIDPQQLYSL------IEILNKAQQ 338 >gi|189464151|ref|ZP_03012936.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM 17393] gi|189437941|gb|EDV06926.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM 17393] Length = 616 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTAEGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN ++ ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRINVDDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 S I+ +++ EY ++ D L+ A L + + K Sbjct: 231 GGHISYQSVIENLNVLDYEYYF----RLTDHFLANQISDALLLLNDVLNK 276 >gi|330996185|ref|ZP_08320075.1| DNA polymerase III, subunit gamma and tau [Paraprevotella xylaniphila YIT 11841] gi|329573689|gb|EGG55280.1| DNA polymerase III, subunit gamma and tau [Paraprevotella xylaniphila YIT 11841] Length = 604 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 116/308 (37%), Gaps = 29/308 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P + C K + L + N +V+EIR + Sbjct: 66 LHPSGNGEACDECES------CKAFNEQRSLNIHELDAASNN---------SVEEIRALI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EKVRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L ++ + + A G + A+ I Sbjct: 171 RCQVYDFNRMSVQAIVNHLKFVADKEGYAYEPEALNIIAQKADGGMRDALSIFDQTVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + I+ +++ EY ++ D L + E + K S Sbjct: 231 GGNLTYKKVIENLNVLDYEYYF----RLTDHFLKNEAAQCMLVFNEILEKGFEGSHFITG 286 Query: 291 LSGQLEEA 298 L+ L + Sbjct: 287 LASHLRDL 294 >gi|322614760|gb|EFY11689.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618867|gb|EFY15755.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623574|gb|EFY20413.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629127|gb|EFY25906.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631848|gb|EFY28602.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637415|gb|EFY34117.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642100|gb|EFY38710.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645876|gb|EFY42397.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652338|gb|EFY48693.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653241|gb|EFY49574.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660610|gb|EFY56846.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664762|gb|EFY60955.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669185|gb|EFY65335.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670730|gb|EFY66863.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679031|gb|EFY75086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682060|gb|EFY78085.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685111|gb|EFY81108.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192995|gb|EFZ78218.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196923|gb|EFZ82065.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203908|gb|EFZ88925.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207007|gb|EFZ91960.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214210|gb|EFZ98968.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214466|gb|EFZ99217.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219191|gb|EGA03688.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226972|gb|EGA11153.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230210|gb|EGA14330.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233948|gb|EGA18037.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238358|gb|EGA22416.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244045|gb|EGA28054.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323251832|gb|EGA35695.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257828|gb|EGA41507.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261158|gb|EGA44750.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264912|gb|EGA48411.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272475|gb|EGA55882.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 642 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSPAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|119774447|ref|YP_927187.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119766947|gb|ABL99517.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 909 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 32/320 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++A D + + + K VD+ R I Sbjct: 65 EQGITATPCGQCSA------CREIAEGRFVDLIEVDAASRTK---------VDDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L++ + L + + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKALTQPQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + E L ++Q + + FD L + ++ + +A+ A G Sbjct: 226 AF-------GGGEVRLAQVQTMLGAIDKGQILNLFDALCQGDIETLLTTARTA--MGFGA 276 Query: 297 EADQIAQIYFSLVKRVHAFS 316 +AD++ + L+ ++ Sbjct: 277 DADEVLRALLELLHQISLAQ 296 >gi|194442832|ref|YP_002039727.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401495|gb|ACF61717.1| DNA polymerase III, tau subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 642 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L +A I + + +L Q+ + L R+ Sbjct: 290 HRIAMVQLSVAAL--GSDMAAIEQRMRELARTVPPGDL---QLYYQTLLIGRK 337 >gi|297616247|ref|YP_003701406.1| DNA polymerase III subunits gamma and tau [Syntrophothermus lipocalidus DSM 12680] gi|297144084|gb|ADI00841.1| DNA polymerase III, subunits gamma and tau [Syntrophothermus lipocalidus DSM 12680] Length = 517 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 137/355 (38%), Gaps = 48/355 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R+ P + G E + L GR+ HA LF G +G GK ++ A V Sbjct: 20 LYRSLRPQRFDEVVGQEQTVRALRNAVQQGRVSHAYLFCGPRGTGKTSVAKILAKAVNCV 79 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C +AS + D + + + N +DEIR +R Sbjct: 80 EPVDGEPCNRCAS------CVDIASGSFMDVIEIDAASNR---------GIDEIRDLREK 124 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +V +ID V + A NALLK+LEEPP+ V+F+L + I +TI SRC Sbjct: 125 VRMMPAQGKTKVYIIDEVHMLTTEAFNALLKTLEEPPESVVFVLATTEPQRIPATILSRC 184 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F LS+ + + L + I + + + A GS+ + IL D+ ++ Sbjct: 185 QRYNFRRLSQTEILERLKTVAQTQGIESEEKALEVIARRATGSMRDGLSIL----DQCLA 240 Query: 238 SYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + I L + + ++ D + ++ + + +A AL Sbjct: 241 YGLSSITYQDVLNVLGLVDDRFLSEFFGSIMEGDAGLVLTYIDQAV------AAGKEALQ 294 Query: 293 GQLEEADQIAQIY--------FSLVKRVHAFSMYNLDRRQ------MIFHLLSKA 333 E AD + + L + V ++ L R+ +I +L + Sbjct: 295 FVREVADYLRDMLVLKAVGPGAELSRVVGDETLLELGRQAESLDTGLILEVLKRV 349 >gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] Length = 548 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I++ + + HA +F G +G GK T+ A + Sbjct: 5 LYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCE 64 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K + ++ D L + + N V++IR IR Sbjct: 65 SLNNEGEPCNECSQ------CKAIRGNSHADVLEIDAASNN---------GVEQIREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SR Sbjct: 110 QVAYAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + ++ + L ++ + + + A G + A+ ++ Sbjct: 170 CQRFDFRRIGPRDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFAT 229 Query: 237 SSYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + I D + +++K++ +LL + + + + IL Sbjct: 230 NETITKDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVIL 274 >gi|304395534|ref|ZP_07377417.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB] gi|304356828|gb|EFM21192.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB] Length = 692 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 134/351 (38%), Gaps = 40/351 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LE Q +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRQQLEHVLKQEQIESETRALQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L + D + L + + LS Sbjct: 226 AMGQGAVTSNTVSVMLGTL----------DDEQPLGLLEALVDGD--GQQVMTLLSQAAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 + + +++ +H +M L LS E N L R+ + Sbjct: 274 RGVEWEALLVEMLRLLHQIAMVQLLPAS-----LSDDDESNALRLRELARV 319 >gi|259502691|ref|ZP_05745593.1| DNA polymerase III [Lactobacillus antri DSM 16041] gi|259169336|gb|EEW53831.1| DNA polymerase III [Lactobacillus antri DSM 16041] Length = 598 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 128/343 (37%), Gaps = 43/343 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + + L + ++ HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQRFDELVGQQVVTQTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + L+D + + + N V+EIR IR Sbjct: 66 HLKDGEPCNEC------EICKAITNGQLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRV 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + + L+Q ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRISAQDAYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDN 230 Query: 231 -------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +++ Y + + AL M+ I + +D + + LI F Sbjct: 231 QVQLKDALTVTGSVTKQLLEKYFFEVTAHQSADALNTMKDILNA--GKDGQRFIEDLISF 288 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 I + + + + + + A +Y + Sbjct: 289 IRDVLLYQESPKLIMVESTGLTD--EDFQKMSAAAPATVLYQM 329 >gi|238537887|pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537888|pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537889|pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537892|pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537893|pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537894|pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537930|pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537931|pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537932|pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537935|pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537936|pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537937|pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide Length = 395 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 87 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 131 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 132 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 192 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 247 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 248 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 307 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 308 LGLLHRIAMVQLSPAALGNDMAAIEL 333 >gi|145633311|ref|ZP_01789042.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 3655] gi|144986157|gb|EDJ92747.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae 3655] Length = 688 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRT---------RVEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|300987929|ref|ZP_07178445.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 45-1] gi|300407599|gb|EFJ91137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 45-1] Length = 449 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|308185942|ref|YP_003930073.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1] gi|308056452|gb|ADO08624.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1] Length = 689 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 77/339 (22%), Positives = 142/339 (41%), Gaps = 36/339 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + + LE Q +I + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDVDQIRQQLEHVLKQEQIESETRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIAD-------ELLSQ--DQKIAFDFLIEFILKEI 282 + SS + ++ E L ++ + D LLSQ + + ++ L+ +L+ + Sbjct: 230 GAVTSSTVSVMLGTLDDEQPLGLLEALVDGNGQQVMNLLSQAASRGVEWEALLVEMLRLL 289 Query: 283 CKSAKAAALSGQL-EEADQIAQIYFSLVKRV--HAFSMY 318 + A L L ++ + A L + V +Y Sbjct: 290 HQIAMVQLLPASLNDDEESNAIRLRELARVVPPADLQLY 328 >gi|33592641|ref|NP_880285.1| DNA polymerase III subunits gamma and tau [Bordetella pertussis Tohama I] gi|33572287|emb|CAE41839.1| DNA polymerase III subunit Tau [Bordetella pertussis Tohama I] Length = 696 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + + L+ + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + D L S D E ++ + + A L Sbjct: 226 AYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADL 285 Query: 292 S-------------GQLEEADQIAQIYFSLVKRVH 313 + G L + D + + L +H Sbjct: 286 AVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH 320 >gi|33595893|ref|NP_883536.1| DNA polymerase III subunits gamma and tau [Bordetella parapertussis 12822] gi|33565972|emb|CAE36523.1| DNA polymerase III subunit Tau [Bordetella parapertussis] Length = 708 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D+L L + N V+E+ ++ Sbjct: 65 ENGITSKPCGQCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + + L+ + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + D L S D E ++ + + A L Sbjct: 226 AYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADL 285 Query: 292 S-------------GQLEEADQIAQIYFSLVKRVH 313 + G L + D + + L +H Sbjct: 286 AVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH 320 >gi|307129958|ref|YP_003881974.1| DNA polymerase III/DNA elongation factor III, tau and subunit gammas [Dickeya dadantii 3937] gi|306527487|gb|ADM97417.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Dickeya dadantii 3937] Length = 672 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 138/339 (40%), Gaps = 36/339 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDT------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + LEQ ++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDAEQIRQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIAD-------ELLSQDQKIAFDF--LIEFILKEI 282 ++ ++ + ++ E L ++ + L+ Q D+ L+ L + Sbjct: 230 GQVTAAAVSQMLGTLDDEQPLALIEALIKGDGAGVMALMGQAASRGVDWEALLVETLTLL 289 Query: 283 CKSAKAAALSGQL-EEADQIAQIYFSLVKRV--HAFSMY 318 + A L L EE +Q+A L + + +Y Sbjct: 290 HRIAMLQLLPSALGEEYNQVAPRLRELARVIPPAEVQLY 328 >gi|167759644|ref|ZP_02431771.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704] gi|167662770|gb|EDS06900.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704] Length = 523 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 139/348 (39%), Gaps = 31/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I K L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + +A+ + + + + N VD IR IR Sbjct: 66 HPVDGSPCGEC------AMCRSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 111 VAYRPTEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L +L + ++ A GS+ ++ +L I Sbjct: 171 QRYDFKRISIETISDRLRELVDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYIG 230 Query: 238 SYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFIL--KEICKSA------- 286 + H+ A+ + ++ ELLS D + E ++ +E+ + A Sbjct: 231 EKLTYDHVLEVLGAVDTETFSRLLRELLSMDVHKVIVTVEELVMQGRELSQLASDFTWYL 290 Query: 287 KAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L + + + + +L + M + D + S Sbjct: 291 RNLLLVKSSDNMEDVLDVSTENLTQLKEEAQMIDNDTLIRYIRIFSDL 338 >gi|52424926|ref|YP_088063.1| DNA polymerase III subunits gamma and tau [Mannheimia succiniciproducens MBEL55E] gi|52306978|gb|AAU37478.1| DnaX protein [Mannheimia succiniciproducens MBEL55E] Length = 693 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 149/357 (41%), Gaps = 45/357 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I LS R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFAEVVGQEHILAALSNGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 MDGVTAEPCGKC------AHCKAIEEGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + L+ + +I + D + AA GS+ ++ + D+ I Sbjct: 170 CMQFNLKALDQKQISHHLQHILKEEEIPYEMTALDKLAKAARGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I ++ M + D+ +Q +I + L + + + K +A A G Sbjct: 226 AMSNGNIS----RDVVRVMLGLLDD--NQPIEILYA-LQQGNGENLMKVIQAVADKGG-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL------DRRQMIFHLLSKARECNDLYFRDFYAI 347 ++ + + +H +M L D Q+ F L+K D+ + FY I Sbjct: 277 ---NWDELLIEVGETLHQIAMQQLLPSTSNDETQIGF--LAKHIAPEDV--QLFYQI 326 >gi|116514540|ref|YP_813446.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093855|gb|ABJ59008.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 592 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D ++A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQMALDLAKSAIQD 274 >gi|281177640|dbj|BAI53970.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE15] Length = 643 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 129/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + L + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQGVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|323965156|gb|EGB60615.1| DNA polymerase III [Escherichia coli M863] gi|327254797|gb|EGE66413.1| DNA polymerase III, subunits gamma and tau [Escherichia coli STEC_7v] Length = 643 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMSLINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|293607024|ref|ZP_06689368.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter piechaudii ATCC 43553] gi|292814621|gb|EFF73758.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter piechaudii ATCC 43553] Length = 794 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++ + D+L L + N V+E+ ++ Sbjct: 65 ETGITSKPCGVCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + +++ L+ ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPADSIVGHLQAVLGHEEVAFEVPALRLIGQAAQGSMRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + D + + + ++ D L + D K E ++ + + A L Sbjct: 226 AYSAGNMTEDAVRGMLGTIDQRHLVRLLDALSTGDAKGVLAVADELAVRGLSYAGALADL 285 Query: 292 SGQLEEADQIAQI 304 + L ++ Sbjct: 286 AVLLSRVAIEQRV 298 >gi|110834636|ref|YP_693495.1| DNA polymerase III subunits gamma and tau [Alcanivorax borkumensis SK2] gi|110647747|emb|CAL17223.1| DNA polymerase III, gamma and tau subunits [Alcanivorax borkumensis SK2] Length = 615 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 137/329 (41%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSRCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P +++ D + + + K V++ R + Sbjct: 65 EQGVSARPCGVC------PTCQEITDGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + L++ I + + AA GS+ A+ + + + Sbjct: 170 CLQFSLKALPAEQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSLTDQAIAFGG 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDF---------LIEFILKEI 282 +++ S ++ ++ + + L + +A++ + L++ ++ ++ Sbjct: 230 EQLSSEAVNAMLGTVDRNHVLTLLVALAEQEPGGVLQALASVSEHCPGELALLDELISQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + A A+ G +E Q Q+ +L Sbjct: 290 HQLAVCQAVPGSYDETQQ--QLAAALTAE 316 >gi|331681865|ref|ZP_08382498.1| DNA polymerase III subunit tau [Escherichia coli H299] gi|331081067|gb|EGI52232.1| DNA polymerase III subunit tau [Escherichia coli H299] Length = 643 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|323164275|gb|EFZ50082.1| DNA polymerase III, subunits gamma and tau [Shigella sonnei 53G] Length = 481 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|292493699|ref|YP_003529138.1| DNA polymerase III subunits gamma and tau [Nitrosococcus halophilus Nc4] gi|291582294|gb|ADE16751.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus halophilus Nc4] Length = 531 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 23/261 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRNFTQLVGQEHVVRALINGLDNDRLHHAFLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + + + D + + + VD+ R + Sbjct: 65 EEGVGSTPCGNCQN------CQAIDAGSFVDLIEVDAASRT---------GVDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGRYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTDPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + L+ + +I + A GS+ A+ +L D+ I Sbjct: 170 CLQFNLRRITPQVIASHLDKILSEEQIPSEFQALTLIARTAEGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ 257 S + L ++Q Sbjct: 226 SYGGGQVTTTDVRTMLGNIEQ 246 >gi|257416948|ref|ZP_05593942.1| DNA-directed DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158776|gb|EEU88736.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 586 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|227519437|ref|ZP_03949486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX0104] gi|227073049|gb|EEI11012.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX0104] Length = 586 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|74311049|ref|YP_309468.1| DNA polymerase III subunits gamma and tau [Shigella sonnei Ss046] gi|73854526|gb|AAZ87233.1| DNA polymerase III tau and gamma subunits [Shigella sonnei Ss046] Length = 641 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|293609325|ref|ZP_06691627.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827777|gb|EFF86140.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 721 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 30/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H +++M + D + D +A + ++ + AL L Sbjct: 225 AYGQGSVHHQD----VKEMLGLIDRTIIYDLILAIHQNQREKVSQLLLQFRHQALDVSLV 280 Query: 297 EADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I+ ++ ++++ + S+ D LSK DL + +Y I Sbjct: 281 LDQLISTLHELAILQYLPDLSLKYSDEINRKIMQLSKLISAQDL--QLYYQI 330 >gi|17545910|ref|NP_519312.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum GMI1000] gi|17428205|emb|CAD14893.1| probable dna polymerase III (subunits tau and gamma) protein [Ralstonia solanacearum GMI1000] Length = 728 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 65 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLASAAQGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADE----LLSQDQKI---------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE L+ ++ A Sbjct: 230 IAYSAGEVTEAAVRGMLGAIDQSYLVRLLDALADENGATLIGIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] gi|151279933|gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] Length = 673 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 121/313 (38%), Gaps = 33/313 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + R+HHA LF G +G+GK TL A Sbjct: 5 VLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAKSFNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P +C + + D++ + + N VDE+ Sbjct: 65 VGPDGNGGITSTPCGVC------EACVAIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + ++V MID V + +A N++LK+LEEPP+ V FIL + I Sbjct: 110 AQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL + ++ L+ Q I + A+GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + + + L + Q + D L +D E + + +A Sbjct: 226 TDQAIAYAAGKVTLDAVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNA 285 Query: 287 KAAALSGQLEEAD 299 L L Sbjct: 286 ALQDLCTLLHRVA 298 >gi|148825823|ref|YP_001290576.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittEE] gi|148715983|gb|ABQ98193.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittEE] Length = 688 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNSVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 532 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 137/336 (40%), Gaps = 40/336 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L +GR+ HA LF G +G GK ++ A V Sbjct: 6 LYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C +++ + + + + + N VD IR I+ Sbjct: 66 HPEDGNPCGVCES------CREIQEGSSMNVMEIDAASNN---------GVDNIRDIKEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VQYSPASGKYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + + L +L + + +V A GS+ A+ +L D+ I+ Sbjct: 171 QRYDFHRITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLL----DQCIA 226 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDF----------LIEFILKE 281 Y+ + + + ++ D +L+ D L +FI Sbjct: 227 FYLGKKLTYENVLEVLGTVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITDF 286 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 I + L+G+ + + + ++ + + + Sbjct: 287 IW-YLRNLLLAGKGDASMEALEVSAEQLSLMQEKAA 321 >gi|237755842|ref|ZP_04584440.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense SS-5] gi|237692007|gb|EEP61017.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense SS-5] Length = 501 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 135/347 (38%), Gaps = 43/347 (12%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G E + K L R+ HA +F G +G+GK T+ A + Sbjct: 8 RKYRPKSFKEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIARILAKVLNCKNP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C ++ + D + + N +D+IR IR + Sbjct: 68 VDYEPCNQCEN------CIEIDKGSFPDMYEIDAASNR---------GIDDIRMIRDNVG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP + +FIL + I TI+SRC + Sbjct: 113 YQPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQT 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY--------- 230 F ++ + L ++ KI + + + G + + +L Sbjct: 173 FIFKPPTKEQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASLLDQAVTYAEGKL 232 Query: 231 ---DCDKIIS----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 D ++I+ SY+ +E + + ++ D L +D+ + + +L+ I Sbjct: 233 TRKDVEEILGIVPYSYVQKFLGNIKELKIDENIKLIDTL--EDEGYDINVFWKQLLEAIH 290 Query: 284 KSAKAAALSGQ-----LEEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 K+ AL + E+ + + K + D +Q+ Sbjct: 291 KTLIDLALDKEDKIFSKEDLKSLIYLKTIFTKAYSEARTF-FDPKQI 336 >gi|332173131|gb|AEE22385.1| DNA polymerase III, subunits gamma and tau [Glaciecola agarilytica 4H-3-7+YE-5] Length = 893 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 142/347 (40%), Gaps = 45/347 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + +S + R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C ++ D L + + K V++ R + Sbjct: 65 ELGMGSKPCGQC------STCVEIEQGNFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V +++++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYRPTRGRYKIYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS + + L+ Q ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKALSRAQIAQQLKHVFNQEQLENEPEALAQLARAAQGSMRDALSL----SDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLI---------EFILKEI 282 + + + L M ++ + +L++ + F+ + +L E+ Sbjct: 226 AQGNGNVSLSIVTDMLGLMDKTQVLKLLNAVLNKQNDLVFELVELMSEQAVDYSQVLNEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 AL+ + +A ++ + + A ++Y L + + H+ Sbjct: 286 MSLLHQVALTQFVPDACKL--------ETISARAIYQLAKNAVPEHI 324 >gi|324010051|gb|EGB79270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 57-2] Length = 643 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|313895047|ref|ZP_07828604.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral taxon 137 str. F0430] gi|312975942|gb|EFR41400.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral taxon 137 str. F0430] Length = 617 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 80/353 (22%), Positives = 132/353 (37%), Gaps = 39/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E I + LS+ SG+ HA LF G +G GK + A + Sbjct: 6 LYRRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +A + D + + N +DEIR +R Sbjct: 66 QGPTLTPCGQCES------CRAIADGSSMDVFEIDAASNR---------GIDEIRDLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V + A NALLK+LEEPP VLFIL + + +TI+SRC Sbjct: 111 VKFAPTEGRCKIYIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F+ ++ + + L + I D + A G + A+ IL + Sbjct: 171 QRYDFHRITVAEIRERLSYVCRESGIAANDDALSIIAAQADGGMRDALSILDQCSALAEG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------FILKEICKS 285 + + + +E + QIAD+ S + L F+ + Sbjct: 231 TLTAEQVQEALGLVGKERIARLAVQIADKDGSGLLAGLSELLQSGRELNRIFVELALHFR 290 Query: 286 AKAAALSGQLEEADQIA--QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A A G + + + L FS + I ++L + E Sbjct: 291 ALMIAGVGGASFTAEFSGTEAAEQLRADAARFS------QPEIMNILRRISET 337 >gi|114320666|ref|YP_742349.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227060|gb|ABI56859.1| DNA polymerase III, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 648 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 133/332 (40%), Gaps = 33/332 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFSEMAGQEHVLRALVNALEQQRLHHAYLFTGTRGVGKTTVARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ + D + + + K V++ R + Sbjct: 65 EQGVTAEPCGTCDA------CRELDAGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +L + L EQ + + AA GS+ A+ +L Sbjct: 170 CLQFNLKNLPGGLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLLDQAIAFGA 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIAD-------ELLSQDQKIAFDF--LIEFILKEI 282 + + ++ + + L+ ++ +A + ++ + A DF ++ +L + Sbjct: 230 GAVREDEVCAMLGTIDRGFVLEALEALAAGDGRALLAVTARMSERAPDFSDALDELLHCL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + A + L D A L R+ A Sbjct: 290 HQLALLQVVPEALPAGDPDADRLRDLAARLPA 321 >gi|312796075|ref|YP_004028997.1| DNA polymerase III subunit gamma/tau [Burkholderia rhizoxinica HKI 454] gi|312167850|emb|CBW74853.1| DNA polymerase III subunit gamma/tau (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 840 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 29/312 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFASLVGQEHVVRALTHALQAQRLHHAYLFTGTRGVGKTTLSRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D++ + + N VDE+ + Sbjct: 65 EAGITATPCGVCKA------CREIDEGRFVDYVEMDAASNR---------GVDEMAALLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + +A N++LK+LEEPP V FIL + I T+ SR Sbjct: 110 RAVYAPVDARFKVYMIDEVHMLTHHAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE++ I + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPAGHIVSHLERILADEGIGFETQALRLLSRAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + Q + D L +D E + + S L Sbjct: 226 AYAAGAVTEQAVRGMLGALDQSYLVRLLDALAMRDGAAVRSVADEMAARSLSFSTALQDL 285 Query: 292 SGQLEEADQIAQ 303 S L AQ Sbjct: 286 SSLLHRIA-WAQ 296 >gi|325126251|gb|ADY85581.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 606 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D ++A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQMALDLAKSAIQD 274 >gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis m4-4] gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis m4-4] Length = 567 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + + L ++ HA LF G +G GK + V Sbjct: 6 LYRVWRPQTFEDVVGQQHVTQTLQNALLQDKISHAYLFSGPRGTGKTSAAKILGKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + ++ D + + + N V+EIR IR Sbjct: 66 RAPIAEPCNEC------AACKGIMDGSIQDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPSAVRFKVYIIDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + + + + + AA G + A+ +L D+ IS Sbjct: 171 QRFDFKRITPRDIVGRMSYIANESGVDVEEQALHVIARAAEGGMRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D + + A + Q+A + ++ A L E + Sbjct: 227 FSDDKVMVGDALTVTGAVAQVHLNQLAKAIHEKEASNALQSLEELV 272 >gi|160902859|ref|YP_001568440.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95] gi|160360503|gb|ABX32117.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95] Length = 467 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 37/308 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + K+ + HA +F G +G GK T A + Sbjct: 5 LYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCK 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +++ D + + + N +DEIR IR Sbjct: 65 DPQGYNPCNKCEN------CVSINNNSFLDVIEMDAASNR---------GIDEIRNIRDS 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID + R A NALLK+LEEPP V+FIL + + TI SR Sbjct: 110 SNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRA 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 I F +L +N + + L+ + I + + A G + AI +L +K Sbjct: 170 QIINFKNLGQNEIVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEK 229 Query: 235 II--SSYIDLIHIPRQEYALQKMQQI----ADELLSQ---------DQKIAFDFLIEFIL 279 I +D++ + + + +Q ++ + DE L+Q D +I + IE+I Sbjct: 230 KITHQDTLDILGLFDENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIF 289 Query: 280 KEICKSAK 287 + + Sbjct: 290 DSLINEKR 297 >gi|323191136|gb|EFZ76400.1| DNA polymerase III, subunits gamma and tau [Escherichia coli RN587/1] Length = 643 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAATRGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAATEL 311 >gi|226954137|ref|ZP_03824601.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244] gi|226835178|gb|EEH67561.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244] Length = 661 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 147/361 (40%), Gaps = 48/361 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVVSR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + + L + I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITEHLTAILAKEHIDADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H Q + D L D+ I +D + + + ++ + L + Sbjct: 225 AYGQGAVH----------HQDVKDMLGLIDRTIIYDLI--LAIHQNQQAQVSQLLMQFRQ 272 Query: 297 EADQIAQIYFSLVKRVHAFSM----------YNLDRRQMIFHLLSKARECNDLYFRDFYA 346 +A ++ + LV +H +M Y+ + Q I H L++ DL + +Y Sbjct: 273 QALDVSLVLDQLVSTLHELAMLQYLPDLALKYSEEINQKILH-LARLVSAQDL--QLYYQ 329 Query: 347 I 347 I Sbjct: 330 I 330 >gi|226329028|ref|ZP_03804546.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198] gi|225202214|gb|EEG84568.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198] Length = 495 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 76/350 (21%), Positives = 135/350 (38%), Gaps = 36/350 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITSKPCGQCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE+ I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLRALDIDQIATQLEKVLLAEHIENDVRARQLIARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S ++ L + + + L+ D + + E + L Sbjct: 226 ASGEGVVSTEVVSQMLGTIDDAQPLALIEALVKADGQQVMSLVNEVASRGTDWEN---FL 282 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 L QIA + L + + +R LL+K+ DL Sbjct: 283 VETLSLLHQIA-MLQLLPSEENPQEQFTQER----LRLLAKSVSPQDLQL 327 >gi|189462594|ref|ZP_03011379.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136] gi|189430755|gb|EDU99739.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136] Length = 623 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 25/270 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C F +Q + + L + N +V++IR + Sbjct: 66 LHPTADGEACNEC--ESCRAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S N+ + LE + I + + A G + A+ I Sbjct: 171 RCQIYDFNRISVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIAD 260 + S I+ +++ EY + + Sbjct: 231 NGHITYQSVIENLNVLDYEYYFKLTDAFLE 260 >gi|319778426|ref|YP_004129339.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis MCE9] gi|317108450|gb|ADU91196.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis MCE9] Length = 380 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFSSLVGQDHVVKALTHALDTERLHHAWLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C Q+ D++ + N V+++ + Sbjct: 65 ETGITSKPCGVCRA------CTQIDEGRFVDYMEFDAASNR---------GVEDMAALIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V ID V ++ A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAIYAPSVGRFKVYTIDEVHMLSGTAFNAMLKTLEEPPPHVKFILATTDPQKIPITVVSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + LE + + S + AA GS+ A+ I D+ I Sbjct: 170 CLQFNLKNMSPEQIVSHLEYILEKESVSYEKSALKLLAQAASGSMRDALSI----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQD-------------QKIAFDFLIEFI 278 + + I + L + ++ LLS D + +F +E + Sbjct: 226 AFSSNNITLDSVRGMLGSIDHTFLARLLKNLLSADATGLKEVTDELANRGFSFSQALEDL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 I K A + + E D + + L K Sbjct: 286 ASLISKIAIEQRIPKTISEDDLLFEDIQELSKVA 319 >gi|295113711|emb|CBL32348.1| DNA polymerase III, subunits gamma and tau [Enterococcus sp. 7L76] Length = 586 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|257081660|ref|ZP_05576021.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol] gi|256989690|gb|EEU76992.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol] Length = 586 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|172056062|ref|YP_001812522.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sibiricum 255-15] gi|171988583|gb|ACB59505.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sibiricum 255-15] Length = 561 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 122/339 (35%), Gaps = 37/339 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I + + RM HA LF G +G GK +L A + Sbjct: 6 LYRVYRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + + + D + + N VDEIR IR Sbjct: 66 QAPVNEPCNEC------PTCRAITEGSSPDVFEIDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP +FIL + I +TI SRC Sbjct: 111 VKYPPSEAAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + L + ++ + I ++ + AA G + A+ +L Sbjct: 171 QRFDVKRHEVDQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + ++ + + + L + ++ ++ + +G Sbjct: 223 ---QAVAFSNGDLTDDAVLEVTGAVEDEALLAVANALQAHQVDQLLQTLEKMQRAG---- 275 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + + LV + L LL +AR Sbjct: 276 -KDLKRFVEDLVFFYRDTLL--LKTSPTAVDLLERARPT 311 >gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] Length = 712 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 28/282 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+ HA + G +G+GK T A + Sbjct: 99 VLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALNC 158 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC + + D L + + VD++R Sbjct: 159 IGPDGKGGPT----ADPCGVCANCVAILNDRHPDVLEMDAASRT---------GVDDVRE 205 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ Sbjct: 206 IIDATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTV 265 Query: 178 RSRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + ++ L + ++ + V AA GSV + +L D Sbjct: 266 LSRCQRFDLRRVPQSELVGLFSRIADKEHVRLSPDALALVARAADGSVRDGLSLL----D 321 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + I+ + I+D L D+++ FD L Sbjct: 322 QAIAQGTG----QTDADGVIGATVISDMLGLADREVVFDLLE 359 >gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108] gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108] Length = 611 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ + + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFSRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S I+ +++ EY + + +S + D L + Sbjct: 231 GGHITYQSVIENLNVLDYEYYFKLTDFFLENKVSDALLLLNDVLNKGFD 279 >gi|104774441|ref|YP_619421.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423522|emb|CAI98424.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 607 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D ++A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQMALDLAKSAIQD 274 >gi|315173519|gb|EFU17536.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1346] Length = 586 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|190573045|ref|YP_001970890.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas maltophilia K279a] gi|190010967|emb|CAQ44576.1| putative DNA polymerase III subunit Tau [Stenotrophomonas maltophilia K279a] Length = 677 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 35/343 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS SGR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C + + D L + + N VD++R + Sbjct: 65 EQGTSADPCGQC------AACLDIDAGRYIDLLEIDAASNT---------GVDDVREVIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++ A NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NAQYMPSRGKYKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L E+ + + L +I S + AA GS+ + +L D+ I Sbjct: 170 CLQFNLKRLDEDQIQGQMTRILAAEEIEADGSAIVQLAKAADGSLRDGLSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + +L + +++ + ++ E Sbjct: 226 AYAGGALR-----------EDVVRTMLGTVDRTQVAAMLDALADGDGPRLLQV-VAALAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + + + +L + +H + L + L A L Sbjct: 274 FSPDWSGVLEALAEGLHRIQVQQLVPGAAVAEGLDAAAFAERL 316 >gi|296274259|ref|YP_003656890.1| DNA polymerase III subunits gamma and tau [Arcobacter nitrofigilis DSM 7299] gi|296098433|gb|ADG94383.1| DNA polymerase III, subunits gamma and tau [Arcobacter nitrofigilis DSM 7299] Length = 607 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 34/354 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G + + LS S R+ HA LF G +G GK + A +L Sbjct: 11 VLALKYRPKRFEDLVGQGTVSQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLC 70 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C ++ D + + + N +D+I+ + Sbjct: 71 SNGPTSKPCEVCEN------CVSANTNRHLDIIEMDAASNR---------GIDDIKDLIE 115 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++V +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 116 HTKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSR 175 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 +F +S+ ++ L + +I + V + GS+ + +L Sbjct: 176 TQHFRFKKISQKDVMNHLTHILNEEQIEFETEALEIVSRSGQGSLRDTLTLLDQAIIFAK 235 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLS-QDQKIAFDFLIEF----ILKEICKSA 286 S+ +D++ + E+ + ++ D +LS D + L E+ + E+ Sbjct: 236 GKVTTSAVVDMLGLIDPEF----LDKLFDVILSCGDITPIVETLEEYEAGSVCDEMTIYL 291 Query: 287 KAAALSG-QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 K L G + + +F ++ N D ++ LSK E +L Sbjct: 292 KNKMLYGKDPKFNVFLYDRFFRILGDAKHLLSLNSDPTFVLILTLSKMSEATNL 345 >gi|117620554|ref|YP_856735.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561961|gb|ABK38909.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 849 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 133/334 (39%), Gaps = 41/334 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ +++ D L + + K V++ R + Sbjct: 65 EQGISSHPCGVCDT------CREIDQGNFVDLLEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL + + K LE Q + AA GS+ A+ + D+ + Sbjct: 170 CLQFHLKSLDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSL----TDQAL 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIA-------------FDFLIEFI 278 + + + L + + Q+ + +L QD FD L + Sbjct: 226 AHGNGSVRLDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEIATLGPDFDQLHAEL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + + A A L ++E A L + + Sbjct: 286 EGLLHRIAMAQLLPATVQEQGADADALLQLAQAM 319 >gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 607 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D + A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQTALDLAKSAIQD 274 >gi|242238465|ref|YP_002986646.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech703] gi|242130522|gb|ACS84824.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii Ech703] Length = 664 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 125/326 (38%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSMERIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + L++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDPEAIRQHLQHVLQEEHVAVEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + L + + + ++ D + L + + + A + Sbjct: 226 AMGQGSVSATVVSHMLGTLDDEQPLSLLEAVVKADGEQVMALLEQAAARGMDWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 L + + ++ + Sbjct: 286 QTLLHRIAMLQLLPSAIGDEYASVEP 311 >gi|254448831|ref|ZP_05062287.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015] gi|198261521|gb|EDY85810.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015] Length = 556 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 125/335 (37%), Gaps = 41/335 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFSELVGQTHVLRALINALDEDRLHHAYLFTGTRGVGKTTIARIIAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ ++ D + + + K VD+ R + Sbjct: 65 EQGVSSTPCGECSA------CVEIDEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL + + E + I + AA GS+ ++ +L Sbjct: 170 CLQFNLKQMPPEAIVAHHEHILGAEGIEYETQALKHIARAAEGSMRDSLSLLDQAIAFGH 229 Query: 232 ---------------CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 I + + E +Q + Q+A+ + D F+ LI Sbjct: 230 GRVRSDDVVSMLGFISRDHIERILQALAAQNSEQVMQAIAQLAEM--APDFVTVFNELIA 287 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + A A+ L + +++ ++ + Sbjct: 288 TLHQMALAKRVAEAVDDSLMDRERLLELAAGFSEE 322 >gi|260584502|ref|ZP_05852249.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans ATCC 700633] gi|260158020|gb|EEW93089.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans ATCC 700633] Length = 573 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 26/266 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + K L + HA LF G +G GK + +A + Sbjct: 6 LYRKWRPQKFEDMVGQTAVTKTLKNAIIHHKTSHAYLFTGPRGTGKTSAAKIFAKAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + D + + + N V+EIR IR Sbjct: 66 NPQDGEPCNDC------LLCKGITEGTIGDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SR Sbjct: 111 ARYAPTQATYKVYIIDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + + L + +I + + A G + A+ +L D++IS Sbjct: 171 QRFDFRRITNDEIIQRLRYILEQEEIAYEEEALSVIARCANGGMRDALSLL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELL 263 D + E A+Q + D+L+ Sbjct: 227 FSDDKVSF---EQAIQVSGSLTDDLM 249 >gi|257084256|ref|ZP_05578617.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1] gi|256992286|gb|EEU79588.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1] Length = 586 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Herminiimonas arsenicoxydans] gi|133738180|emb|CAL61225.1| DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] [Herminiimonas arsenicoxydans] Length = 682 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 139/363 (38%), Gaps = 48/363 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + R+HHA LF G +G+GK TL A Sbjct: 5 VLARKYRPKSFDTLVGQEHVVRALTHALENKRLHHAYLFTGTRGVGKTTLSRILAKSFNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N D + P +C + + D++ + + N VDE+ Sbjct: 65 IGPDGNGDITATPCGVC------EACVAIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + ++V MID V + +A N++LK+LEEPP+ V FIL + I Sbjct: 110 AQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL + ++ L+ Q +I + A+GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVAHLDDILGQEQIEFETPALRLLAQGAHGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + + + L + Q + D L +D E + + +A Sbjct: 226 TDQAIAYAAGKVTLEAVQGMLGALDQSFLIRLLDALAQKDGAGLLAVADEMATRSLSYNA 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL--LSKARECNDLYFRDF 344 L L L + V A +L R + L L A E + F Sbjct: 286 ALQDLGSLLHRIA--------LAQTVPAALPDDLPERDDVLRLAALFDAEE-----IQLF 332 Query: 345 YAI 347 Y I Sbjct: 333 YQI 335 >gi|261822478|ref|YP_003260584.1| DNA polymerase III subunits gamma/tau [Pectobacterium wasabiae WPP163] gi|261606491|gb|ACX88977.1| DNA polymerase III, subunits gamma and tau [Pectobacterium wasabiae WPP163] Length = 690 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 129/333 (38%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LEQ + + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRAHLEQVLQAENLANEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +S ++ E L ++ +A +Q DQ A E +L E Sbjct: 230 GQVTTASVSQMLGTLDDEQPLALIEALAKGDGAQVMSLLDQVAARGVDWESLLVETQTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D A + + + A Sbjct: 290 HRIAMVQLLPAALGDDYAAVEARMRELARALPP 322 >gi|261341080|ref|ZP_05968938.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC 35316] gi|288316753|gb|EFC55691.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC 35316] Length = 645 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 126/310 (40%), Gaps = 28/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + KI+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S D + + + + +++ + + + E + + + + Sbjct: 226 ASGDGKLSTDAVSTMLGTLDDDQALSLIEAMIAANGERVMSLVNEAAARGVEWESLLVEM 285 Query: 292 SGQLEEADQI 301 G L + Sbjct: 286 LGLLHRVAML 295 >gi|145630854|ref|ZP_01786631.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] gi|144983514|gb|EDJ90982.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae R3021] Length = 688 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNSVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 AL L + Sbjct: 290 HQIALMQLLPQ 300 >gi|153854738|ref|ZP_01995972.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814] gi|149752645|gb|EDM62576.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814] Length = 523 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I + L + R+ HA LF G +G GK T+ +A V Sbjct: 6 LYRKFRPDEFEDVKGQDAIVRTLKNQINADRIGHAYLFCGTRGTGKTTVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K +A+ + + + + N VD IR IR Sbjct: 66 HPVDGSPCGEC------AMCKSIAAGTSMNVIEIDAASNN---------GVDNIREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + I TI SRC Sbjct: 111 VTYRPTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S + L +L D ++ A GS+ ++ +L ++ Sbjct: 171 QRYDFKRISIETIAARLRELIDKEGWDVEDKAVRYIAKMADGSMRDSLSLLDQCAAFYMN 230 Query: 238 SYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILK 280 + H+ A+ + ++ +LL+ D + + E +++ Sbjct: 231 ETLTYDHVLEVLGAVDTEVFSRLLRQLLAMDVHQVIETVDELVMQ 275 >gi|307822531|ref|ZP_07652762.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] gi|307736135|gb|EFO06981.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] Length = 540 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 35/315 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + K L R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPHNFTEVVGQEHVVKSLMNALQHDRLHHAYLFTGTRGVGKTTIARILAKAINC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + + D + + + K V++ R + Sbjct: 65 ENLQDFNPCGVC------SVCRDLDEGRFLDLIEVDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 N G ++V +ID V ++ ++ NALLK+LEEPP V F+L + I T+ SR Sbjct: 110 NAQYAPNHGRYKVYLIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPHKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 CL L + ++ L+Q I + AA GS+ + +L Y Sbjct: 170 CLQFNLKRLLPSQIFTQMEFILQQEHIEAESGALKLLSRAADGSMRDGLSLLDQAIVYGN 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEIC 283 K+ + ++ + A Q ++ I L D D + E +L++I Sbjct: 230 GKVGTEDVNAM---LGTVAQQPVEAILTALAEGDAAAILDKINEIANLTPDFSDVLQQIL 286 Query: 284 KSAKAAALSGQLEEA 298 + AL Q+ A Sbjct: 287 QVLHRIALLQQIPNA 301 >gi|238537915|pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537916|pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537917|pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537920|pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537921|pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537922|pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537925|pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537926|pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537927|pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 8 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 68 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 113 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 172 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 173 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 228 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 229 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 288 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 289 LGLLHRIAMVQLSPAALGNDMAAIEL 314 >gi|315168761|gb|EFU12778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1341] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ + + + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMKEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|299067243|emb|CBJ38440.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CMR15] Length = 763 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 36 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 95 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 96 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 140 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 141 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 200 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 201 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLASAAQGSMRDALSLTDQA 260 Query: 228 -LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + + ++ ++ Q Y ++ + +ADE + +I A Sbjct: 261 IAYSAGEVSEAAVRGMLGAIDQSYLVRVLDALADENGAALIEIADEMAGRSLSFSGALQD 320 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 321 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 376 >gi|187733496|ref|YP_001879179.1| DNA polymerase III subunits gamma and tau [Shigella boydii CDC 3083-94] gi|187430488|gb|ACD09762.1| DNA polymerase III, tau subunit [Shigella boydii CDC 3083-94] Length = 643 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|323144867|ref|ZP_08079436.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei YIT 12066] gi|322415392|gb|EFY06157.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei YIT 12066] Length = 372 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 79/357 (22%), Positives = 138/357 (38%), Gaps = 42/357 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L + R+HHA L G +GIGK T+ A + Sbjct: 11 LARKYRPQTFADVVGQDHVLSALCNTIDAKRIHHAYLLTGTRGIGKTTIARIIAKSLECE 70 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ K +A+ D + + + K VD+ R++ Sbjct: 71 TGITSKPCLQCDA------CKAIAAGNYPDVIEIDAASQTK---------VDDTRQLLEN 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 TG +++ +ID V + N+ NALLK+LEEPP V FIL + I +T+ SRC Sbjct: 116 TQYPPLTGRYKIYIIDEVHMLTNNSFNALLKTLEEPPSYVKFILATTDPHKIPTTVLSRC 175 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L + +LS + + L + + AA GS+ A+ + CD+ I+ Sbjct: 176 LQFQLKALSVDEIKNRIISILATEGVPCEIEAAQLIARAAKGSMRDALSL----CDQAIA 231 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + L D L+++ +I+ + E ++ A LS + Sbjct: 232 LGSGALERKSVITMLGTA---GDGLIAE--------IIDLLAPE-TEANLAGVLSKFAQI 279 Query: 298 ADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYF-----RDFYAI 347 + + L H ++Y + D +F L F + +Y I Sbjct: 280 SPNFKAVLDDLAIAFHDLALYQMIGDNALGVFTLPQDILNTYAKVFSPESVQLYYQI 336 >gi|293390054|ref|ZP_06634388.1| DNA polymerase III subunit tau [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950588|gb|EFE00707.1| DNA polymerase III subunit tau [Aggregatibacter actinomycetemcomitans D7S-1] Length = 681 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 42/356 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQQHILTALANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + D + + + K V++ R + Sbjct: 65 VSGVTAEPCGVC------EHCNAIEKGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVLGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPYKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L ++ + L Q +I D + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALEQSQIADHLAYILNQEQIPFESLALDKLANAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + M + DE SQ ++ + L + +++ ++ A A + Sbjct: 226 AMSNGNVTL----NIVNDMLGLLDE--SQAIEMIYA-LQQGNGEKLMQAVNAVA-----D 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI-----FHLLSKARECNDLYFRDFYAI 347 +A ++ + + +H +M L + + L+K D+ F FY + Sbjct: 274 KAGDWDELLREVAENLHKIAMQQLLPQAALDESSQIGFLAKHIAPQDVQF--FYQV 327 >gi|253687471|ref|YP_003016661.1| DNA polymerase III, subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754049|gb|ACT12125.1| DNA polymerase III, subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 685 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 129/333 (38%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LEQ ++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDAEQIRAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +S ++ E L ++ +A +Q DQ A E +L E Sbjct: 230 GQVTTASVSQMLGTLDDEQPLALIEALAKGDGAQVMSLLDQVAARGVDWESLLVETQTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D A + + A Sbjct: 290 HRIAMVQLLPAALGDDYAAVEARMRDLARALPP 322 >gi|82542963|ref|YP_406910.1| DNA polymerase III subunits gamma and tau [Shigella boydii Sb227] gi|81244374|gb|ABB65082.1| DNA polymerase III tau and gamma subunits [Shigella boydii Sb227] Length = 623 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|315149916|gb|EFT93932.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0012] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|117925035|ref|YP_865652.1| DNA polymerase III subunits gamma/tau [Magnetococcus sp. MC-1] gi|117608791|gb|ABK44246.1| DNA polymerase III, gamma subunit [Magnetococcus sp. MC-1] Length = 605 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 77/358 (21%), Positives = 141/358 (39%), Gaps = 48/358 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + L GR+ HA LF G +GIGK TL A + Sbjct: 9 VLARKWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMCLNC 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ + + D + + K V+++R + Sbjct: 69 GTGVTANPCGACDS------CRAIVRGEHPDVFEVDAASRTK---------VEQMRELLD 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ T + +++ ++D V ++ ++ NALLK+LEEPP V FI + IL TI SR Sbjct: 114 GVAYTPSLSRYKIYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSR 173 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL-----HYD 231 C L + L + L +I + AA GSV A+ +L H Sbjct: 174 CQRYDLRRLDRDGLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLLDQAIAHGG 233 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQI-ADELLSQDQKIAF--------DFLIEFILKEI 282 + L+ + ++ + + LL ++ A+ L+ +L Sbjct: 234 GRVDYTHVSGLLGLTDRQAVVALFADLCRGRLLEMLERAAYFHRDGVEPVVLLNDLLDIT 293 Query: 283 CKSAKAAAL-----SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + A+ + L E + + +++ L L+ QM++ +L + RE Sbjct: 294 HQVTRELAVGVGDAAQALSEHEGLKEVWPKLG----------LEHLQMLYQVLLRGRE 341 >gi|262041601|ref|ZP_06014797.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041074|gb|EEW42149.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 361 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|325982256|ref|YP_004294658.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212] gi|325531775|gb|ADZ26496.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212] Length = 537 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 39/318 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA L G +G+GK T+ A + Sbjct: 6 VLARKWRPRNFTELTGQEHVVRALTNALEQNRLHHAYLLTGTRGVGKTTIARILAKSLNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C Q+ S + D + L + N + VD +R + Sbjct: 66 ETGITATPCGTCTT------CVQIDSGSFIDLVELDAASNTQ---------VDNMRELLE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G +++ +ID V ++++A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 111 NALYAPTCGRYKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSR 170 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILH------- 229 CL + + ++L K L Q KI V AA GS+ A+ +L Sbjct: 171 CLQFNLKQIPQPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLLDQAIAFGA 230 Query: 230 --------YDCDKII--SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 D II S DL+ Q+ L K+ +ADE+ ++ ++FD ++ + Sbjct: 231 GKIEEASVRDMLGIIDHSYLFDLLDALTQKNGL-KLLSLADEMEARC--LSFDCALQDLA 287 Query: 280 KEICKSAKAAALSGQLEE 297 + + A A A+ L E Sbjct: 288 VILHRIALAQAIPQALGE 305 >gi|218698618|ref|YP_002406247.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI39] gi|218368604|emb|CAR16341.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli IAI39] Length = 643 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|257421610|ref|ZP_05598600.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis X98] gi|257163434|gb|EEU93394.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis X98] gi|315155639|gb|EFT99655.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0043] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|257420166|ref|ZP_05597160.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11] gi|257161994|gb|EEU91954.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|256963882|ref|ZP_05568053.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271831|ref|ZP_07553102.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0855] gi|256954378|gb|EEU71010.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511709|gb|EFM80708.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0855] gi|315148740|gb|EFT92756.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4244] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|256960974|ref|ZP_05565145.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96] gi|293384387|ref|ZP_06630270.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis R712] gi|293388163|ref|ZP_06632686.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis S613] gi|312908210|ref|ZP_07767180.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 512] gi|312978640|ref|ZP_07790371.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 516] gi|256951470|gb|EEU68102.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96] gi|291078286|gb|EFE15650.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis R712] gi|291082453|gb|EFE19416.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis S613] gi|310625799|gb|EFQ09082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 512] gi|311288542|gb|EFQ67098.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis DAPTO 516] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|215485550|ref|YP_002327981.1| DNA polymerase III subunits gamma and tau [Escherichia coli O127:H6 str. E2348/69] gi|312964465|ref|ZP_07778759.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 2362-75] gi|215263622|emb|CAS07953.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O127:H6 str. E2348/69] gi|312290942|gb|EFR18818.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 2362-75] Length = 643 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|91201430|emb|CAJ74490.1| similar to DNA polymerase III subunit gamma/tau [Candidatus Kuenenia stuttgartiensis] Length = 558 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 28/287 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G I K L + R+ HA LF G +G+GK + + + Sbjct: 5 VLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +CN + ++ + D L + + N +DEIR IR Sbjct: 65 VNGPTDTPCNVCN------ICQSISEGSDIDVLEIDGASNR---------GIDEIRNIRQ 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +R+ +ID V + R A NALLK+LEEPP V FI + A+ + T++SR Sbjct: 110 NVGFAPSRARYRIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F ++S N++ K L ++ + + A G + + +L D++ Sbjct: 170 CQRFDFKNISVNDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVL----DQLF 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFI 278 S D + Y L K+ + + +++D A + + + Sbjct: 226 SFCDDNVTSADVNYVLGYIDDDKIYSMFECFVNKDTSGALRIVDDIL 272 >gi|332098642|gb|EGJ03608.1| DNA polymerase III, subunits gamma and tau [Shigella boydii 3594-74] Length = 463 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|312951953|ref|ZP_07770841.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0102] gi|310630142|gb|EFQ13425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0102] Length = 586 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|237746948|ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] gi|229378299|gb|EEO28390.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] Length = 597 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + + L+ SGR+HHA LF G +GIGK TL A + Sbjct: 5 VLARKYRPKNFESIVGQDHVVRALTHALESGRLHHAYLFTGTRGIGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP C K + S D++ + + N + ++ ++ Sbjct: 65 EKGITSAPCGEC------EACKAIDSDRFVDYIEMDAASNR---------GIADMLQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V MID V + A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 QAVYAPTAARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++L + L++ + + + A GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPVVHIVDHLARVLDREGVPYEKTALQLLAQGAQGSMRDALSLTDQAIAYTA 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 K+ + D++ Y + ++ D L + D K E + + SA L Sbjct: 230 GKVTGEAVQDMLGSLDSTYLV----RLLDCLAATDGKELLKVADEMAFRSLSYSAALQDL 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFS 316 L + + L + V A+ Sbjct: 286 GLLLHRIAVVQSVPGYLSEEVPAYQ 310 >gi|1527143|gb|AAC97559.1| DNA polymerase III tau subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 642 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 34/331 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQASSSGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 230 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289 Query: 283 CKSAKAAALSGQL-EEADQIAQIYFSLVKRV 312 + A L + I Q L + V Sbjct: 290 HRIAMVQLSPAALGSDMAAIEQRMRELCRTV 320 >gi|224026026|ref|ZP_03644392.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM 18228] gi|224019262|gb|EEF77260.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM 18228] Length = 641 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L + ++ HA LF G +G+GK T +A + Sbjct: 21 VSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKTINC 80 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C F +Q + + L + N +V++IR + Sbjct: 81 LHPKEDGEACNEC--ESCQAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 125 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 126 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 185 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S +++ + LE + + + + A G + A+ I Sbjct: 186 RCQIYDFNRISVSDMVEHLESVALKEHVEAEPEALNVIAQKADGGMRDALSIFDQVVSFT 245 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S ID +++ EY + + +++ + D L Sbjct: 246 NGHITYKSVIDNLNVLDYEYYFRLTDCFLENKVTECMLLFNDVL 289 >gi|218549862|ref|YP_002383653.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii ATCC 35469] gi|218357403|emb|CAQ90042.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia fergusonii ATCC 35469] Length = 643 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMSLINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|300930225|ref|ZP_07145639.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 187-1] gi|300461880|gb|EFK25373.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 187-1] Length = 643 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|294650252|ref|ZP_06727622.1| DNA polymerase III, tau and gamma subunits [Acinetobacter haemolyticus ATCC 19194] gi|292823856|gb|EFF82689.1| DNA polymerase III, tau and gamma subunits [Acinetobacter haemolyticus ATCC 19194] Length = 682 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 147/361 (40%), Gaps = 48/361 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVVSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + + L + I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITEHLTAILVKEHIDADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H Q + D L D+ I +D + + + ++ + L + Sbjct: 225 AYGQGAVH----------HQDVKDMLGLIDRTIIYDLI--LAIHQNQQAQVSQLLMQFRQ 272 Query: 297 EADQIAQIYFSLVKRVHAFSM----------YNLDRRQMIFHLLSKARECNDLYFRDFYA 346 +A ++ + LV +H +M Y+ + Q I H L++ DL + +Y Sbjct: 273 QALDVSLVLDQLVSTLHELAMLQYLPDLALKYSEEINQKILH-LARLVSAQDL--QLYYQ 329 Query: 347 I 347 I Sbjct: 330 I 330 >gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 607 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLAADQGAMPDIIEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D + A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQTALDLAKSAIQD 274 >gi|261855382|ref|YP_003262665.1| DNA polymerase III subunits gamma/tau [Halothiobacillus neapolitanus c2] gi|261835851|gb|ACX95618.1| DNA polymerase III, subunits gamma and tau [Halothiobacillus neapolitanus c2] Length = 591 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 135/319 (42%), Gaps = 37/319 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPKSFAEMVGQGHVLQALTNALDQSRLHHAYLFTGTRGVGKTTVARIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C+ ++ D + + + VD+ R + Sbjct: 65 EHGISSTPCGVCSA------CVEIDQGRFVDLIEVDAASRT---------GVDDTRDLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +++ +ID V ++++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVAYAPVRGRFKIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + L++ I + + AA GS+ A+ +L D+ I Sbjct: 170 CLQFNLRALPLSQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA---ALSG 293 + + Q++ L D +I +D +I+ + ++ A AL Sbjct: 226 AFTGGKLDTV----------QVSQILGLSDHQIIWD-MIDALYQQSADRLFALVDEALDR 274 Query: 294 QLEEADQIAQIYFSLVKRV 312 +E A +AQ S+ + Sbjct: 275 AVEPAILLAQFIESIHQLA 293 >gi|82775799|ref|YP_402146.1| DNA polymerase III subunits gamma and tau [Shigella dysenteriae Sd197] gi|309786053|ref|ZP_07680682.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 1617] gi|81239947|gb|ABB60657.1| DNA polymerase III, tau and gamma subunits [Shigella dysenteriae Sd197] gi|308926164|gb|EFP71642.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae 1617] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium cellulolyticum H10] gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulolyticum H10] Length = 562 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 34/297 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + E + + + SGR+ HA LF G +G GK T+ +A + Sbjct: 6 LYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFARAINCI 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N +VD +R IR Sbjct: 66 NPKDGNPCNEC------EVCRGILDESILDVVEIDAASNN---------SVDNVREIRDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VVYAPSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK--- 234 F ++ + + ++ + I D + A G++ A+ IL + Sbjct: 171 QRFDFKKITPAGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGST 230 Query: 235 --IISSYIDLIHIPRQEYALQKMQQIAD----------ELLSQDQKIAFDFLIEFIL 279 + +D I I ++ + + I E+LS + + F + +L Sbjct: 231 TITYQNVLDAIGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVL 287 >gi|71906445|ref|YP_284032.1| AAA ATPase, central region [Dechloromonas aromatica RCB] gi|71846066|gb|AAZ45562.1| AAA ATPase, central region [Dechloromonas aromatica RCB] Length = 537 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 124/312 (39%), Gaps = 29/312 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRNFSTLVGQEHVVRALTHALSEQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ S D L + + N VDE+R++ Sbjct: 65 ETGITATPCGTCSA------CQEIDSGRFVDLLEVDAATNT---------RVDEMRQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++ +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 NAVYAPTRGRFKVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL-----HYD 231 CL + + L + I V +A GS+ A+ +L H Sbjct: 170 CLQFNLKQMPVLAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLLDQAIAHGA 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + ++ Q+Y + I + L + + ++ + SA L Sbjct: 230 GRVEEAQVRSMLGTVDQDY----LFTILEALHGAEPSALLQVAADLGIRSLSFSAALQEL 285 Query: 292 SGQLEEADQIAQ 303 L QIAQ Sbjct: 286 GALLTRL-QIAQ 296 >gi|163846115|ref|YP_001634159.1| DNA polymerase III subunits gamma and tau [Chloroflexus aurantiacus J-10-fl] gi|163667404|gb|ABY33770.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aurantiacus J-10-fl] Length = 609 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 121/319 (37%), Gaps = 36/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + L G E + + L R+ HA LF G +G+GK T+ A V Sbjct: 17 LYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCL 76 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPD + P +C +A D + + + + +V++ R I Sbjct: 77 NPDPTARPCGVC------EMCAAIAEGRAVDVIEMDAASHT---------SVEDAREIIE 121 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V +ID ++ A NALLK+LEEPP LFIL + + +TI SR Sbjct: 122 RVQFRPAEARMKVYIIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSR 181 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F S + + L ++ I+ D + + AA GS+ A+ IL Sbjct: 182 CQRFTFVRHSVSAMAAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILE------- 234 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 L L ++Q + + + L+ L ++ A G Sbjct: 235 ----QLASFVEGPITLPQVQSLLGMTAAAEVDALITALVNHDLTAALRAVHGVANQG--- 287 Query: 297 EADQIAQIYFSLVKRVHAF 315 + Q LV+R+ A Sbjct: 288 --ADVRQFTRDLVERLRAV 304 >gi|317478676|ref|ZP_07937831.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|316905187|gb|EFV26986.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 604 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTADGEACNQC--ESCTSFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ + + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFSRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S I+ +++ EY + + +S + D L + Sbjct: 231 GGHITYKSVIENLNVLDYEYYFKLTGFFLENKISDALLLLNDVLNKGFD 279 >gi|26246484|ref|NP_752523.1| DNA polymerase III subunits gamma and tau [Escherichia coli CFT073] gi|91209543|ref|YP_539529.1| DNA polymerase III subunits gamma and tau [Escherichia coli UTI89] gi|117622727|ref|YP_851640.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC O1] gi|170681602|ref|YP_001742614.1| DNA polymerase III subunits gamma and tau [Escherichia coli SMS-3-5] gi|218557380|ref|YP_002390293.1| DNA polymerase III subunits gamma and tau [Escherichia coli S88] gi|218688333|ref|YP_002396545.1| DNA polymerase III subunits gamma and tau [Escherichia coli ED1a] gi|227884517|ref|ZP_04002322.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972] gi|293408619|ref|ZP_06652458.1| DNA polymerase III [Escherichia coli B354] gi|300919875|ref|ZP_07136342.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 115-1] gi|300935752|ref|ZP_07150717.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 21-1] gi|301022523|ref|ZP_07186397.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 69-1] gi|301049679|ref|ZP_07196627.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 185-1] gi|306813063|ref|ZP_07447256.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101] gi|331656528|ref|ZP_08357490.1| DNA polymerase III subunit tau [Escherichia coli TA206] gi|26106882|gb|AAN79067.1|AE016756_250 DNA polymerase III subunit tau [Escherichia coli CFT073] gi|91071117|gb|ABE05998.1| DNA polymerase III subunit tau [Escherichia coli UTI89] gi|115511851|gb|ABI99925.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC O1] gi|170519320|gb|ACB17498.1| DNA polymerase III, tau subunit [Escherichia coli SMS-3-5] gi|218364149|emb|CAR01814.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli S88] gi|218425897|emb|CAR06703.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli ED1a] gi|222032264|emb|CAP75003.1| DNA polymerase III subunit tau [Escherichia coli LF82] gi|227838603|gb|EEJ49069.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972] gi|284920279|emb|CBG33338.1| DNA polymerase III subunits gamma and tau [Escherichia coli 042] gi|291471797|gb|EFF14280.1| DNA polymerase III [Escherichia coli B354] gi|294489591|gb|ADE88347.1| DNA polymerase III, tau subunit [Escherichia coli IHE3034] gi|300298572|gb|EFJ54957.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 185-1] gi|300397484|gb|EFJ81022.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 69-1] gi|300413091|gb|EFJ96401.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 115-1] gi|300459052|gb|EFK22545.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 21-1] gi|305853826|gb|EFM54265.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101] gi|307552376|gb|ADN45151.1| DNA polymerase III subunit tau [Escherichia coli ABU 83972] gi|307628061|gb|ADN72365.1| DNA polymerase III subunits gamma and tau [Escherichia coli UM146] gi|312945047|gb|ADR25874.1| DNA polymerase III subunits gamma and tau [Escherichia coli O83:H1 str. NRG 857C] gi|315289907|gb|EFU49297.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 110-3] gi|315294238|gb|EFU53589.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 153-1] gi|315298000|gb|EFU57270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 16-3] gi|323952919|gb|EGB48787.1| DNA polymerase III [Escherichia coli H252] gi|331054776|gb|EGI26785.1| DNA polymerase III subunit tau [Escherichia coli TA206] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] Length = 615 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 S I+ +++ EY ++ D L+ A L + + K Sbjct: 231 GGHISYKSVIENLNVLDYEYYF----RLTDHFLANQVSDALLLLNDVLNK 276 >gi|254514492|ref|ZP_05126553.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium NOR5-3] gi|219676735|gb|EED33100.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium NOR5-3] Length = 557 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 41/336 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPATFDALVGQEHVLQALRHALDSNRLHHAYLFTGTRGVGKTTIARILARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S +P C ++ D + + + K V++ R + Sbjct: 65 EKGVSASPCGECGS------CLEITEGRSVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRYKVYLIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L Q K+ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKNMSAERVVEHLRDILAQEKVDFDEPALWQLGRAAAGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQD-------------QKIAFDFLIEFI 278 + + L + + ++ + LL+ D Q + F ++ + Sbjct: 226 AFGDGALRDAEVASMLGSVDRRHVHELLEALLADDAGALMGCCAQMDEQGVDFASAVDEL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + + A A A+ ++ A+ L R+ A Sbjct: 286 GSVLHRCALAQAVPEAIDREFGDAERLADLAGRMTA 321 >gi|198276945|ref|ZP_03209476.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] gi|198270470|gb|EDY94740.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] Length = 633 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L + ++ HA LF G +G+GK T +A + Sbjct: 28 VSARKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAYLFCGPRGVGKTTCARIFAKTINC 87 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V++IR + Sbjct: 88 LHPTSEGEACNECES------CKAFNEQRSYNIHELDAASNN---------SVEDIRSLI 132 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPPQ +FIL + IL TI S Sbjct: 133 EQVRIPPQIGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPQHAIFILATTEKHKILPTILS 192 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ ++ N+ + LE + I + + A G + A+ I Sbjct: 193 RCQIYDFSRITVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFT 252 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + S I+ +++ EY + + +++ D L + Sbjct: 253 NGHITYQSVIENLNVLDYEYYFKLTDFFLENKVAECLLTFNDILRKGFD 301 >gi|29377253|ref|NP_816407.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis V583] gi|227554263|ref|ZP_03984310.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis HH22] gi|229549105|ref|ZP_04437830.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis ATCC 29200] gi|255971824|ref|ZP_05422410.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1] gi|256616720|ref|ZP_05473566.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256763401|ref|ZP_05503981.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3] gi|256958005|ref|ZP_05562176.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5] gi|257079943|ref|ZP_05574304.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1] gi|257087744|ref|ZP_05582105.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6] gi|257091016|ref|ZP_05585377.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis CH188] gi|294779698|ref|ZP_06745086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis PC1.1] gi|300861270|ref|ZP_07107357.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TUSoD Ef11] gi|307269190|ref|ZP_07550545.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4248] gi|307277017|ref|ZP_07558126.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2134] gi|307288600|ref|ZP_07568582.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0109] gi|307290217|ref|ZP_07570133.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0411] gi|312900139|ref|ZP_07759455.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0470] gi|312902602|ref|ZP_07761808.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0635] gi|29344719|gb|AAO82477.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis V583] gi|227176623|gb|EEI57595.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis HH22] gi|229305730|gb|EEN71726.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis ATCC 29200] gi|255962842|gb|EET95318.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1] gi|256596247|gb|EEU15423.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256684652|gb|EEU24347.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3] gi|256948501|gb|EEU65133.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5] gi|256987973|gb|EEU75275.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1] gi|256995774|gb|EEU83076.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6] gi|256999828|gb|EEU86348.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis CH188] gi|294453189|gb|EFG21603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis PC1.1] gi|300850309|gb|EFK78059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TUSoD Ef11] gi|306498638|gb|EFM68139.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0411] gi|306500435|gb|EFM69770.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0109] gi|306506312|gb|EFM75473.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2134] gi|306514482|gb|EFM83042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4248] gi|310634272|gb|EFQ17555.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0635] gi|311292774|gb|EFQ71330.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0470] gi|315025455|gb|EFT37387.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2137] gi|315032629|gb|EFT44561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0017] gi|315035150|gb|EFT47082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0027] gi|315143828|gb|EFT87844.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX2141] gi|315154258|gb|EFT98274.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0031] gi|315159651|gb|EFU03668.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0312] gi|315162057|gb|EFU06074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0645] gi|315165347|gb|EFU09364.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1302] gi|315573755|gb|EFU85946.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0309B] gi|315579587|gb|EFU91778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0630] gi|315580330|gb|EFU92521.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0309A] gi|323481702|gb|ADX81141.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis 62] gi|327535993|gb|AEA94827.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus faecalis OG1RF] gi|329572917|gb|EGG54538.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1467] Length = 586 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|152991199|ref|YP_001356921.1| DNA polymerase III subunits gamma and tau [Nitratiruptor sp. SB155-2] gi|151423060|dbj|BAF70564.1| DNA polymerase III, gamma/tau subunits [Nitratiruptor sp. SB155-2] Length = 512 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/354 (18%), Positives = 142/354 (40%), Gaps = 35/354 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + L G E + + L + + + HA LF G +G GK + ++ ++ + Sbjct: 3 LALKYRPKRFEDLIGQEAVTQTLQRALDTKNLSHAYLFSGLRGSGKTSTARIFSKALICD 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C + D + + + N K +D+IR + Sbjct: 63 GGPTSSPCETCEN------CQAANEGRHIDIIEMDAASNRK---------IDDIRDLIEH 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 108 TKYKPSSARYKIFIIDEVHMLTKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRT 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +++ ++ LE + + + + GS+ + +L D+ I+ Sbjct: 168 QHFRFKKIAQRDIVHHLEHILNLENVEYEPEALQILARSGSGSLRDTLTLL----DQAIT 223 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + + + L +K++ + D +L QD++ + E +L E+ Sbjct: 224 FGKNRVSVEAVTNMLGLVDPKKIEALFDMILRQDKEAILQTVQELRDYEAQMVLDEMLIF 283 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 K S + + + +F ++ + D ++ L K E + Sbjct: 284 LKNQLFSKNSTFSMMLYERFFKILSDGKNLLFVSGDDEFVLMITLMKLMEATKI 337 >gi|229544838|ref|ZP_04433563.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX1322] gi|256854074|ref|ZP_05559439.1| DNA polymerase III [Enterococcus faecalis T8] gi|229310006|gb|EEN75993.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis TX1322] gi|256711017|gb|EEU26060.1| DNA polymerase III [Enterococcus faecalis T8] gi|315030401|gb|EFT42333.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX4000] Length = 586 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662] gi|167652320|gb|EDR96449.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662] Length = 529 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 40/333 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L +GR+ HA LF G +G GK ++ A V Sbjct: 3 LYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C +++ + + + + + N VD IR I+ Sbjct: 63 HPEDGNPCGVCES------CREIQEGSSMNVMEIDAASNN---------GVDNIRDIKEQ 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 108 VQYSPASGKYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRC 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ ++ + + L +L + + +V A GS+ A+ +L D+ I+ Sbjct: 168 QRYDFHRITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLL----DQCIA 223 Query: 238 SYI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDF----------LIEFILKE 281 Y+ + + + ++ D +L+ D L +FI Sbjct: 224 FYLGKKLTYENVLEVLGTVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITDF 283 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 I + L+G+ + + + ++ + + Sbjct: 284 IW-YLRNLLLAGKGDASMEALEVSAEQLSLMQE 315 >gi|324114695|gb|EGC08663.1| DNA polymerase III [Escherichia fergusonii B253] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMSLINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|227358077|ref|ZP_03842419.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma subunit) [Proteus mirabilis ATCC 29906] gi|227161812|gb|EEI46844.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma subunit) [Proteus mirabilis ATCC 29906] Length = 658 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 28/289 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITSKPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE+ I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLRALDVDQIATQLEKVLSAEHIENDVRARQLIARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIH---IPRQEYALQKMQQIA--DELLSQDQKIAFDFLIEFILK 280 +S ++ + R + Q +A + L+ D + + E L+ Sbjct: 226 ASGEGIVSTEVVSRMLGTIDDAQPLALIEALVKADGQQVMSLVNEVALR 274 >gi|16128454|ref|NP_415003.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. MG1655] gi|89107339|ref|AP_001119.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. W3110] gi|170080055|ref|YP_001729375.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. DH10B] gi|188492605|ref|ZP_02999875.1| DNA polymerase III, tau subunit [Escherichia coli 53638] gi|209917686|ref|YP_002291770.1| DNA polymerase III subunits gamma and tau [Escherichia coli SE11] gi|238899757|ref|YP_002925553.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli BW2952] gi|253774540|ref|YP_003037371.1| DNA polymerase III subunits gamma and tau [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160539|ref|YP_003043647.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str. REL606] gi|256023912|ref|ZP_05437777.1| DNA polymerase III subunits gamma and tau [Escherichia sp. 4_1_40B] gi|300818196|ref|ZP_07098407.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 107-1] gi|300947873|ref|ZP_07162023.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 116-1] gi|300958039|ref|ZP_07170203.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 175-1] gi|301647399|ref|ZP_07247209.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 146-1] gi|118808|sp|P06710|DPO3X_ECOLI RecName: Full=DNA polymerase III subunit tau; Contains: RecName: Full=DNA polymerase III subunit gamma gi|41291|emb|CAA27827.1| unnamed protein product [Escherichia coli] gi|43320|emb|CAA28174.1| dnaZX protein (AA 1-643) [Escherichia coli] gi|145297|gb|AAA23457.1| dnaX ORF [Escherichia coli] gi|1773152|gb|AAB40224.1| dna polymerase III subunits gamma and tau [Escherichia coli] gi|1786676|gb|AAC73572.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. MG1655] gi|85674609|dbj|BAE76249.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K12 substr. W3110] gi|169887890|gb|ACB01597.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli str. K-12 substr. DH10B] gi|188487804|gb|EDU62907.1| DNA polymerase III, tau subunit [Escherichia coli 53638] gi|209910945|dbj|BAG76019.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE11] gi|238860837|gb|ACR62835.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli BW2952] gi|242376252|emb|CAQ30943.1| DNA polymerase III, tau subunit, subunit of DNA polymerase III, tau subunit dimer and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253325584|gb|ACT30186.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972440|gb|ACT38111.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str. REL606] gi|253976650|gb|ACT42320.1| DNA polymerase III subunits gamma and tau [Escherichia coli BL21(DE3)] gi|260450344|gb|ACX40766.1| DNA polymerase III, subunits gamma and tau [Escherichia coli DH1] gi|300315306|gb|EFJ65090.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 175-1] gi|300452551|gb|EFK16171.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 116-1] gi|300529087|gb|EFK50149.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 107-1] gi|301074454|gb|EFK89260.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 146-1] gi|309700730|emb|CBJ00026.1| DNA polymerase III subunits gamma and tau [Escherichia coli ETEC H10407] gi|315135151|dbj|BAJ42310.1| DNA polymerase III subunits gamma and tau [Escherichia coli DH1] gi|315616588|gb|EFU97205.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 3431] gi|323938656|gb|EGB34905.1| DNA polymerase III [Escherichia coli E1520] gi|323943275|gb|EGB39431.1| DNA polymerase III [Escherichia coli E482] gi|323963459|gb|EGB59021.1| DNA polymerase III [Escherichia coli H489] gi|324016730|gb|EGB85949.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 117-3] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|325498242|gb|EGC96101.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii ECD227] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMSLINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862775|gb|EDO56206.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 604 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 66 MSPTADGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ + + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFSRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S I+ +++ EY + + +S + D L + Sbjct: 231 GGHITYKSVIENLNVLDYEYYFKLTGFFLENKISDALLLLNDVLNKGFD 279 >gi|307298980|ref|ZP_07578782.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] gi|306915405|gb|EFN45790.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] Length = 485 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + +++ L + ++ HA +F G +G GK T A + Sbjct: 4 VLYRKYRPRNFNELVGQDQVKEILGKAIEKNKLSHAYIFSGSRGTGKTTSARILAKMLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + S+ P +C+ K + S + D + L + +DEIR+IR Sbjct: 64 LSEGSEKPCGVCDS------CKAIDSSSHMDVVELDAASYR---------GIDEIRKIRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID + R A NALLK+LEEPP +V+FIL + + TI SR Sbjct: 109 AVSYRPVMGKFKVYIIDEFHMLTREAFNALLKTLEEPPDRVVFILATTNLEKVPETILSR 168 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 C F L E ++ LE++ ++ + ++ AA+G + A+ ++ Sbjct: 169 CQIFYFKPLREEDIVTYLERIARAEELQYDEKALRYISKAAHGGMRDAVNLMER 222 >gi|323945253|gb|EGB41310.1| DNA polymerase III [Escherichia coli H120] Length = 643 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|319956021|ref|YP_004167284.1| DNA polymerase iii, subunits gamma and tau [Nitratifractor salsuginis DSM 16511] gi|319418425|gb|ADV45535.1| DNA polymerase III, subunits gamma and tau [Nitratifractor salsuginis DSM 16511] Length = 615 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 136/359 (37%), Gaps = 37/359 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L+Q R+ HA LF G +G GK + +A +L Sbjct: 5 LARKYRPRSFADLVGQETVSQTLAQALDGDRLSHAYLFSGLRGSGKTSTARIFAKALLCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + D + + + N +D+I+ + Sbjct: 65 KGPTSQPCEEC------PHCIMANEYRHMDIIEMDAASNR---------GIDDIKELIEH 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +G +++ +ID V + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 110 TKYKPGSGRFKIFIIDEVHMLTTQAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + + LE + I + + + GS+ ++ +L D+ I Sbjct: 170 QHFRFKKIPPRLVKSHLEHILHLEGIDYEPEALEIIARSGAGSLRDSLTLL----DQAIV 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL-------IEFILKEICKS 285 + +P L K+ + D +L++D+ F+ E I+ E+ Sbjct: 226 YAKGKVDLPTVTEMLGIIDPAKLDDLLDRILNKDEAGILAFIHESSEYETEMIIDELTLH 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL-LSKARECNDLYFRD 343 K + I +F ++ D + + L L K E + D Sbjct: 286 LKDLLFAKDPRFPPLILDRFFRILAEAKELLFLGSD-GEFVLSLTLFKMMEALSIKEID 343 >gi|331666829|ref|ZP_08367703.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271] gi|331066053|gb|EGI37937.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271] Length = 483 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|288936781|ref|YP_003440840.1| DNA polymerase III subunits gamma/tau [Klebsiella variicola At-22] gi|288891490|gb|ADC59808.1| DNA polymerase III, subunits gamma and tau [Klebsiella variicola At-22] Length = 635 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] Length = 478 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + ++K + + H +F G +G GK TL A + Sbjct: 3 VLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + L + N +DEIRRIR Sbjct: 63 ENRKGVEPCNSCRA------CREIDEGTFMDVIELDAASNR---------GIDEIRRIRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SR Sbjct: 108 AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + K L++ I F+ A G + A+ +L K Sbjct: 168 CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQ-VWKFS 226 Query: 237 SSYIDL--IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----EICKSAKAAA 290 IDL +H +Q ++ + + S D K F L + E+ Sbjct: 227 EGKIDLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVED 286 Query: 291 LSGQLEE--------ADQIAQIYFSLVKRVHAF 315 L LE A+ I Q+ L+ + Sbjct: 287 LVEDLERERGVYQVSANDIVQVSRQLLNLLREI 319 >gi|323958663|gb|EGB54366.1| DNA polymerase III [Escherichia coli H263] Length = 299 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 122/308 (39%), Gaps = 28/308 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEAD 299 G L Sbjct: 286 LGLLHRIA 293 >gi|206576456|ref|YP_002240028.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342] gi|206565514|gb|ACI07290.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342] Length = 635 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter bethesdensis CGDNIH1] gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis CGDNIH1] Length = 686 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 139/383 (36%), Gaps = 60/383 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L + R+ HA + G +G+GK T A + Sbjct: 50 VLARQYRPRHFDDLIGQDALVRTLRNAFALNRVAHAFMLTGVRGVGKTTTARIIARALNC 109 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + + D + + + VD++ Sbjct: 110 TGADGQGGPTADPCGVC------PNCTAILADRHPDVVEMDAASRT---------GVDDV 154 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I +V +ID V ++RNA NALLK+LEEPP V FI + + Sbjct: 155 REIIEATRFRPLQARTKVFIIDEVHMLSRNAFNALLKTLEEPPPHVTFIFATTELRKVPV 214 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + L LEQ + + AA GSV + +L Sbjct: 215 TVLSRCQRFDLRRIDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLLDQA 274 Query: 232 CDK-------IISSYIDLIHIPRQEYALQKMQQI-----ADELL--------SQDQKIAF 271 + + D++ + + L ++ + A L D + Sbjct: 275 IAQNDPGIPISEAQVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVL 334 Query: 272 DFLIEFI-----LKEI--CKSAKAAALSGQLEE---ADQIA-----QIYFSLVKRVHAFS 316 L+E I LK I ++A A + +L AD++A + + L+K + Sbjct: 335 QDLLELIHTLTRLKTIPHLRTAPGMAEAERLRGSALADRLAMPVLGRAWQMLLKGIAEVE 394 Query: 317 MYNLDRRQMIFHLLSKARECNDL 339 DRR +L + DL Sbjct: 395 AA-PDRRAAAEMVLIRLCYVADL 416 >gi|218703753|ref|YP_002411272.1| DNA polymerase III subunits gamma and tau [Escherichia coli UMN026] gi|293403591|ref|ZP_06647682.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412] gi|298379201|ref|ZP_06989082.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302] gi|300900544|ref|ZP_07118711.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 198-1] gi|218430850|emb|CAR11724.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli UMN026] gi|291429444|gb|EFF02464.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412] gi|298280314|gb|EFI21818.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302] gi|300356025|gb|EFJ71895.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 198-1] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|218553036|ref|YP_002385949.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI1] gi|218359804|emb|CAQ97345.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli IAI1] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|24111853|ref|NP_706363.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a str. 301] gi|30061970|ref|NP_836141.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a str. 2457T] gi|110804497|ref|YP_688017.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 5 str. 8401] gi|24050648|gb|AAN42070.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Shigella flexneri 2a str. 301] gi|30040214|gb|AAP15947.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Shigella flexneri 2a str. 2457T] gi|110614045|gb|ABF02712.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri 5 str. 8401] gi|281599809|gb|ADA72793.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri 2002017] gi|313646900|gb|EFS11357.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri 2a str. 2457T] Length = 641 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEGNGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|313885466|ref|ZP_07819216.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola ACS-139-V-Col8] gi|312619196|gb|EFR30635.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola ACS-139-V-Col8] Length = 675 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 35/318 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I++ L + ++ HA LF G +G GK + A V Sbjct: 6 LYRVWRPQTFDELIGQNVIQQTLKNAVMNQQLSHAYLFTGPRGTGKTSAAKILAKAVNCQ 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + D + + + N V+EIR +R Sbjct: 66 NPQNGNPCNEC------EACRLINEGQMSDIIEIDAASNN---------GVEEIRDLRDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V + A NALLK+LEEPP VLFIL + I +TI SR Sbjct: 111 VRYAASQAKYKVYIIDEVHMLTTGAFNALLKTLEEPPANVLFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ +++ +L + + KI + + AA G + ++ +L Sbjct: 171 QRFDFHRIADKDLIDRMAYILDTDKIAYDQEALEIIARAARGGMRDSLSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + R + +++ Q++ S DQ+ +L+ + + + A L QL + Sbjct: 223 ---QALSYNRDQVSVENALQVS---GSMDQQEFVKYLM-AVYSQQAQHALEL-LDQQLAQ 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 Q + LV Sbjct: 275 GKQANRFIEELVVFARDM 292 >gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium carboxidivorans P7] gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium carboxidivorans P7] gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium carboxidivorans P7] gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium carboxidivorans P7] Length = 541 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 129/327 (39%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK + A V Sbjct: 6 LYREWRPRIFDDVVGQKHITVTLKNQIRNNRIAHAYLFSGTRGTGKTSTAKILAKAVNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K++ S D + + + +++I+ + Sbjct: 66 DLRDGEPCNECD------MCKKINSGISIDVIEMDAASKR---------RLEDIKDVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D V + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKYKVYIMDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F + +++ +++ I D + + + G++ A+ IL Sbjct: 171 QKFDFRRIKSSDIFGRMRDIVKEQGIFADDRSLNLIARMSDGAMRDALSILDQAISMGGG 230 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-----ILKEICKSAK 287 K+ S + ++ + E ++ I D+ + + K+ D ++ ++++ + Sbjct: 231 KVEYESVVSMLGLVTNENMIKLADSIIDKNVEESMKVIDDIVLSGKDIYNFIRDMITHLR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 + +E ++I + ++ + Sbjct: 291 NLLMVKVSKEPEEILDMSEENIELLKE 317 >gi|160875802|ref|YP_001555118.1| DNA polymerase III subunits gamma and tau [Shewanella baltica OS195] gi|160861324|gb|ABX49858.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS195] gi|315267992|gb|ADT94845.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica OS678] Length = 1137 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 116/273 (42%), Gaps = 24/273 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 32 VLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++A D + + + K VD+ R + Sbjct: 92 EQGVTATPCGVCGS------CVEIAQGRFVDLIEVDAASRTK---------VDDTRELLD 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL SL++ + L + + + AA GS+ A+ + Sbjct: 197 CLQFNLKSLTQGEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAFGG 256 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLS 264 + +++ ++ +++ + ++ + D + Sbjct: 257 GNVMLTQVQTMLGSIDEQHVVALLKALTDADIG 289 >gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] Length = 478 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + ++K + + H +F G +G GK TL A + Sbjct: 3 VLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + L + N +DEIRRIR Sbjct: 63 ENRKGVEPCNSCRA------CREIDEGTFMDVIELDAASNR---------GIDEIRRIRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SR Sbjct: 108 AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + K L++ I F+ A G + A+ +L K Sbjct: 168 CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQ-VWKFS 226 Query: 237 SSYIDL--IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----EICKSAKAAA 290 IDL +H +Q ++ + + S D K F L + E+ Sbjct: 227 EGKIDLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVED 286 Query: 291 LSGQLEE--------ADQIAQIYFSLVKRVHAF 315 L LE A+ I Q+ L+ + Sbjct: 287 LVEDLERERGVYQVSANDIVQVSRQLLNLLREI 319 >gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] Length = 478 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + ++K + + H +F G +G GK TL A + Sbjct: 3 VLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + L + N +DEIRRIR Sbjct: 63 ENRKGVEPCNSCRA------CREIDEGTFMDVIELDAASNR---------GIDEIRRIRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SR Sbjct: 108 AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + K L++ I F+ A G + A+ +L K Sbjct: 168 CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQ-VWKFS 226 Query: 237 SSYIDL--IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----EICKSAKAAA 290 IDL +H +Q ++ + + S D K F L + E+ Sbjct: 227 EGKIDLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVED 286 Query: 291 LSGQLEE--------ADQIAQIYFSLVKRVHAF 315 L LE A+ I Q+ L+ + Sbjct: 287 LVEDLERERGVYQVSANDIVQVSRQLLNLLREI 319 >gi|325578015|ref|ZP_08148209.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae ATCC 33392] gi|325160248|gb|EGC72376.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae ATCC 33392] Length = 714 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 77/361 (21%), Positives = 140/361 (38%), Gaps = 52/361 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFSEVVGQSHVLTALENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + + D + + + K V++ R + Sbjct: 65 VNGITADPCGECEN------CKAIEAGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ L E + L + I D + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKVLDEPQISAHLNRVLTAENIPFDAPALDKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSAKAAAL 291 + + L LL +DQ I + + E ++K I A Sbjct: 226 AMGNGKVSTDVVNTMLG--------LLDEDQPIEIIYALHQGNGESLMKTIQTVA----- 272 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMI-----FHLLSKARECNDLYFRDFYA 346 E+A ++ +++H ++ L + + L+K D+ F FY Sbjct: 273 ----EKAGDWDELLAETAEKLHQIALMQLLAKSVTDENDHLGFLAKHISPEDVQF--FYQ 326 Query: 347 I 347 + Sbjct: 327 V 327 >gi|116493222|ref|YP_804957.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC 25745] gi|116103372|gb|ABJ68515.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC 25745] Length = 581 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 77/342 (22%), Positives = 130/342 (38%), Gaps = 41/342 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + HA LF G +G GK + +A V + Sbjct: 6 LYRVWRPQKFDDMVGQDVVTRTLKNALITEQTSHAYLFTGPRGTGKTSAAKIFAKAVNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + L+D + + + N V+EIR IR Sbjct: 66 YLKDGEPCNEC------VTCKAITEGTLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V ++D V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 111 AKYAPTEADYKVYIVDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPLTIISRT 170 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + L+Q I + AA G + A+ IL D++IS Sbjct: 171 QRFDFKRITPAQSYDRMVYILDQKGIQYDQKALAIIAKAAEGGMRDALSIL----DQVIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---GQ 294 + + + + Q L++ L +I K +AAL Sbjct: 227 FGNEEVTLDNALLVTGSVNQ---------------KLLDQYLTQIFKQETSAALETLHQI 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L+E ++ L+ +Y D + + L+ E Sbjct: 272 LDEGKDGQRLIEDLIAVQRNLLLYQEDPQLVQEQSLNDLSEA 313 >gi|33152827|ref|NP_874180.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] gi|33149052|gb|AAP96569.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] Length = 687 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 76/357 (21%), Positives = 146/357 (40%), Gaps = 45/357 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L ++HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVIGQQHVLSALENGLRQDKLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETSITATPCGKCEN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L+ L + LE Q I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALTPTQLSQHLEFILTQENIPYELAAIEKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS--AKAAALSGQ 294 + I +P + +M + D+ D +E ++ + A + Sbjct: 226 AVSNTNITLP----IVSEMLGLIDD----------DQPLELVMALAQANGDQVMAIIQNI 271 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQ----MIFHLLSKARECNDLYFRDFYAI 347 + Q+ + + +H +M L +++ HLL+K D+ F FY + Sbjct: 272 ATKGIDWQQLLNDVAETLHQIAMLQLLKQETPSDTPLHLLAKQIPPEDVQF--FYQL 326 >gi|323160419|gb|EFZ46367.1| DNA polymerase III, subunits gamma and tau [Escherichia coli E128010] Length = 372 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|331645656|ref|ZP_08346759.1| DNA polymerase III subunit tau [Escherichia coli M605] gi|331044408|gb|EGI16535.1| DNA polymerase III subunit tau [Escherichia coli M605] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|307137113|ref|ZP_07496469.1| DNA polymerase III subunits gamma and tau [Escherichia coli H736] gi|331640993|ref|ZP_08342128.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736] gi|331037791|gb|EGI10011.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736] Length = 483 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|157159997|ref|YP_001457315.1| DNA polymerase III subunits gamma and tau [Escherichia coli HS] gi|170021142|ref|YP_001726096.1| DNA polymerase III subunits gamma and tau [Escherichia coli ATCC 8739] gi|157065677|gb|ABV04932.1| DNA polymerase III, tau and gamma subunits [Escherichia coli HS] gi|169756070|gb|ACA78769.1| DNA polymerase III, subunits gamma and tau [Escherichia coli ATCC 8739] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|290474637|ref|YP_003467517.1| DNA polymerase III subunits tau/gamma; DNA elongation factor III [Xenorhabdus bovienii SS-2004] gi|289173950|emb|CBJ80737.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Xenorhabdus bovienii SS-2004] Length = 658 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 132/328 (40%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQIFSDVIGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +K P C ++ D + + + K V++ R + Sbjct: 65 ETGITKTPCGQCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ + + LE +I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALNVDQISGQLEHVLNAEQIESDSRARHLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + Q+ L + ++L+ +++ + A G Sbjct: 226 A-------LGGGKLTADIVSQMLGTLDNDQPLEMIEWLVRADGQQLMALVEQIASRGV-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + ++ +H +M L +Q Sbjct: 277 ---DWEHLLVDILSLLHRIAMLQLLPQQ 301 >gi|317126764|ref|YP_004093046.1| DNA polymerase III subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] gi|315471712|gb|ADU28315.1| DNA polymerase III, subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] Length = 574 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 39/341 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I K L ++ HA LF G +G GK + + + Sbjct: 6 LYRVWRPTCLSDVVGQEHITKTLKNALIEEKLSHAYLFTGPRGTGKTSAAKIISKAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ + D + + + N VDEIR IR Sbjct: 66 HAPVTEPCNEC------AACKGISDGTIVDVMEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I TI SRC Sbjct: 111 VKFAPSAVKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 F +S + + ++ + ++ + A+ G + A+ +L D+ Sbjct: 171 QRFDFKRISAQAMIDRMREIIEASHVHVEEAALSLIARASEGGMRDALSLLDQAISYADE 230 Query: 235 IISS--YIDLIHIPRQEYALQKMQQI----------ADELLSQDQKIAFDFLIEFILKEI 282 ++ + +I Q+ + A +L+ ++ K FL + I Sbjct: 231 SVTEDDVLSIIGAVSQQLLYDVALALNEGHVAGGLEAVDLIIKEGKDPNRFLEDLIF--F 288 Query: 283 CKSAKAAALSGQLEEADQ---IAQIYFSLVKRVHAFSMYNL 320 + + QLEE+ + + + +V+++ A +YN+ Sbjct: 289 YRDVLMFKAAPQLEESKERLLTDERFKEIVEKLEAAWIYNV 329 >gi|110640731|ref|YP_668459.1| DNA polymerase III subunits gamma and tau [Escherichia coli 536] gi|191173688|ref|ZP_03035212.1| DNA polymerase III, tau subunit [Escherichia coli F11] gi|300997166|ref|ZP_07181662.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 200-1] gi|110342323|gb|ABG68560.1| DNA polymerase III subunit tau [Escherichia coli 536] gi|190906046|gb|EDV65661.1| DNA polymerase III, tau subunit [Escherichia coli F11] gi|300304301|gb|EFJ58821.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 200-1] gi|324010642|gb|EGB79861.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 60-1] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|15800199|ref|NP_286211.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 EDL933] gi|15829777|ref|NP_308550.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. Sakai] gi|168747852|ref|ZP_02772874.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4113] gi|168754577|ref|ZP_02779584.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4401] gi|168760373|ref|ZP_02785380.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4501] gi|168768427|ref|ZP_02793434.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4486] gi|168777168|ref|ZP_02802175.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4196] gi|168778965|ref|ZP_02803972.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4076] gi|168786323|ref|ZP_02811330.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC869] gi|168798036|ref|ZP_02823043.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC508] gi|195936033|ref|ZP_03081415.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. EC4024] gi|208806002|ref|ZP_03248339.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4206] gi|208815685|ref|ZP_03256864.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4045] gi|208822985|ref|ZP_03263303.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4042] gi|209399465|ref|YP_002269120.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4115] gi|217326165|ref|ZP_03442249.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. TW14588] gi|254791653|ref|YP_003076490.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. TW14359] gi|261223952|ref|ZP_05938233.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. FRIK2000] gi|261256334|ref|ZP_05948867.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. FRIK966] gi|291281376|ref|YP_003498194.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str. CB9615] gi|12513340|gb|AAG54819.1|AE005226_2 DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Escherichia coli O157:H7 str. EDL933] gi|13359980|dbj|BAB33946.1| DNA polymerase III tau and gamma subunits [Escherichia coli O157:H7 str. Sakai] gi|187767563|gb|EDU31407.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4196] gi|188017706|gb|EDU55828.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4113] gi|189002758|gb|EDU71744.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4076] gi|189358057|gb|EDU76476.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4401] gi|189362356|gb|EDU80775.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4486] gi|189369171|gb|EDU87587.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4501] gi|189373554|gb|EDU91970.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC869] gi|189379409|gb|EDU97825.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC508] gi|208725803|gb|EDZ75404.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4206] gi|208732333|gb|EDZ81021.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4045] gi|208737178|gb|EDZ84862.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4042] gi|209160865|gb|ACI38298.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. EC4115] gi|209778388|gb|ACI87506.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778390|gb|ACI87507.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778392|gb|ACI87508.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778394|gb|ACI87509.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|209778396|gb|ACI87510.1| DNA polymerase III tau and gamma subunits [Escherichia coli] gi|217322386|gb|EEC30810.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str. TW14588] gi|254591053|gb|ACT70414.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O157:H7 str. TW14359] gi|290761249|gb|ADD55210.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str. CB9615] gi|320638464|gb|EFX08178.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. G5101] gi|320643845|gb|EFX12968.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H- str. 493-89] gi|320649196|gb|EFX17774.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H- str. H 2687] gi|320656089|gb|EFX24005.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661239|gb|EFX28670.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7 str. USDA 5905] gi|320665215|gb|EFX32308.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7 str. LSU-61] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|191167488|ref|ZP_03029301.1| DNA polymerase III, tau subunit [Escherichia coli B7A] gi|193064152|ref|ZP_03045236.1| DNA polymerase III, tau subunit [Escherichia coli E22] gi|194428982|ref|ZP_03061514.1| DNA polymerase III, tau subunit [Escherichia coli B171] gi|218693932|ref|YP_002401599.1| DNA polymerase III subunits gamma and tau [Escherichia coli 55989] gi|256020441|ref|ZP_05434306.1| DNA polymerase III subunits gamma and tau [Shigella sp. D9] gi|260842670|ref|YP_003220448.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O103:H2 str. 12009] gi|260853693|ref|YP_003227584.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O26:H11 str. 11368] gi|260866631|ref|YP_003233033.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O111:H- str. 11128] gi|300820283|ref|ZP_07100435.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 119-7] gi|300903259|ref|ZP_07121188.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 84-1] gi|301301624|ref|ZP_07207759.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 124-1] gi|309794794|ref|ZP_07689215.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 145-7] gi|331676144|ref|ZP_08376856.1| DNA polymerase III subunit tau [Escherichia coli H591] gi|190902444|gb|EDV62180.1| DNA polymerase III, tau subunit [Escherichia coli B7A] gi|192929181|gb|EDV82791.1| DNA polymerase III, tau subunit [Escherichia coli E22] gi|194412919|gb|EDX29209.1| DNA polymerase III, tau subunit [Escherichia coli B171] gi|218350664|emb|CAU96356.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli 55989] gi|257752342|dbj|BAI23844.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O26:H11 str. 11368] gi|257757817|dbj|BAI29314.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O103:H2 str. 12009] gi|257762987|dbj|BAI34482.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli O111:H- str. 11128] gi|300404698|gb|EFJ88236.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 84-1] gi|300527068|gb|EFK48137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 119-7] gi|300843121|gb|EFK70881.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 124-1] gi|308121447|gb|EFO58709.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 145-7] gi|315059749|gb|ADT74076.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Escherichia coli W] gi|315256300|gb|EFU36268.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 85-1] gi|323178255|gb|EFZ63833.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1180] gi|323184699|gb|EFZ70070.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1357] gi|323379686|gb|ADX51954.1| DNA polymerase III, subunits gamma and tau [Escherichia coli KO11] gi|324116958|gb|EGC10871.1| DNA polymerase III [Escherichia coli E1167] gi|331076202|gb|EGI47484.1| DNA polymerase III subunit tau [Escherichia coli H591] gi|332103974|gb|EGJ07320.1| DNA polymerase III subunit tau [Shigella sp. D9] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|315170423|gb|EFU14440.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX1342] Length = 586 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L +++ +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRDLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|197284051|ref|YP_002149923.1| DNA polymerase III subunits gamma/tau [Proteus mirabilis HI4320] gi|194681538|emb|CAR40452.1| DNA polymerase III Tau subunit (contains DNA polymerase III Gamma subunit) [Proteus mirabilis HI4320] Length = 658 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 28/289 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFNDVVGQRHVLTALANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITSKPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE+ I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLRALDVDQIATQLEKVLSAEHIENDVRARQLIARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIH---IPRQEYALQKMQQIA--DELLSQDQKIAFDFLIEFILK 280 +S ++ + R + Q +A + L+ D + + E L+ Sbjct: 226 ASGEGIVSTEVVSRMLGTIDDAQPLALIEALVKADGQQVMSLVNEVALR 274 >gi|325122590|gb|ADY82113.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter calcoaceticus PHEA-2] Length = 685 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 30/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H +++M + D + D +A + ++ + AL L Sbjct: 225 AYGQGSVHHQD----VKEMLGLIDRTIIYDLILAIHQNQREKVSQLLLQFRHQALDVSLV 280 Query: 297 EADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I+ ++ ++++ + S+ D LSK DL + +Y I Sbjct: 281 LDQLISTLHELAILQYLPDLSLKYSDEINRKIMQLSKLISAQDL--QLYYQI 330 >gi|283784297|ref|YP_003364162.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium ICC168] gi|282947751|emb|CBG87307.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium ICC168] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 28/308 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQSFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRHQLEHILDEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + +++ D + + E + I A + Sbjct: 226 ASGDGQITTQAVSAMLGTLDDDQALSLVEAVVAADGERVMSLVNEAAARGIEWEALLVEM 285 Query: 292 SGQLEEAD 299 G L Sbjct: 286 LGLLHRIA 293 >gi|15988192|pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|15988193|pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|15988194|pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|61679661|pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex gi|61679662|pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex gi|61679663|pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex gi|61679666|pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex gi|61679667|pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex gi|61679668|pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex Length = 373 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|193067655|ref|ZP_03048622.1| DNA polymerase III, tau subunit [Escherichia coli E110019] gi|300924198|ref|ZP_07140190.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 182-1] gi|301330662|ref|ZP_07223264.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 78-1] gi|192959067|gb|EDV89503.1| DNA polymerase III, tau subunit [Escherichia coli E110019] gi|300419651|gb|EFK02962.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 182-1] gi|300843323|gb|EFK71083.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS 78-1] Length = 643 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] Length = 562 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 26/268 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + E + + + SGR+ HA LF G +G GK T+ +A + Sbjct: 6 LYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRVAHAYLFCGTRGTGKTTMAKIFARAINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N +VD +R IR Sbjct: 66 NPKDGDPCNEC------EVCRGILDESILDVVEIDAASNN---------SVDNVREIREE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VVYAPSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ + + ++ + I D + A G++ A+ IL D+ I+ Sbjct: 171 QRFDFKKITPAGIAERVKVIARASGIQLDDDGALLIARLADGALRDALSIL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQ 265 + I E L + ++D+ +S+ Sbjct: 227 EGNNNIT---HENVLDAIGIVSDDFISE 251 >gi|146310611|ref|YP_001175685.1| DNA polymerase III subunits gamma and tau [Enterobacter sp. 638] gi|145317487|gb|ABP59634.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit [Enterobacter sp. 638] Length = 642 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 131/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + KI+ + AA GS+ A+ + D Sbjct: 170 CLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSLTDQAIASGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + + + + + ++ L+ +L + Sbjct: 230 GQLSTVAVSTMLGTLDDDQALSLVEAVIEANGERVMSLVNVAASRGVEWEALLVEMLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A + +A I + + Sbjct: 290 HRVAMLQLSPAAI--GADMAAIEQRMRELARIVPP 322 >gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 607 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G++ HA LF G +G GK + +A + Sbjct: 6 LYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ A+ D + + + N +VDEIR + Sbjct: 66 NLQEGEPCNECSN------CLDADQGAMPDIVEMDAASNN---------SVDEIRDLLDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ +A NALLK+LEEPP V+FIL + + +TI SR Sbjct: 111 VHYAPTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F S + + +E Q + D + A G + A+ IL +K Sbjct: 171 QRYNFKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKS 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 Y D + + A ++++++ LL+ D + A D I Sbjct: 231 SVRYEDALEVTGFA-AQEQVEKLLLALLNGDSQTALDLAKSAIQD 274 >gi|322834005|ref|YP_004214032.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602] gi|321169206|gb|ADW74905.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602] Length = 649 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 132/328 (40%), Gaps = 43/328 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + K LE Q I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDAEQIRKQLEHVLTQETITTEPRALQLLSRAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + +A L + D + L + SA + Q+E Sbjct: 226 AMGQGAVTT----------ETVAQMLGTLDDEQPLAMLEALV------SADGGQMMAQVE 269 Query: 297 EADQIAQIYFSL----VKRVHAFSMYNL 320 +A + +L + +H +M L Sbjct: 270 QAASRGVDWENLLVETLALLHRIAMVQL 297 >gi|61679671|pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex gi|61679672|pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex gi|61679673|pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex gi|61679676|pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex gi|61679677|pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex gi|61679678|pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex Length = 368 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|71065614|ref|YP_264341.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter arcticus 273-4] gi|71038599|gb|AAZ18907.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter arcticus 273-4] Length = 631 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C+ + D + + + K V++ R + Sbjct: 67 DTGITSTPCGVCDN------CVAIDQGRFIDLIEIDAASRTK---------VEDTRELLD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NVPYAPSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL LS++ L + L Q ++ + AA GSV A+ + Sbjct: 172 CLQFVLRPLSQSLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQ 231 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQ-----QIADELLSQ-----DQKIAFDFLIEFI 278 D ++S + LI + + +A + D FD L E + Sbjct: 232 GALDDVTVNSMLGLIDAADLVSLITDIYHHDKPAVAAHIEQMRAQMVDASSMFDGLAELL 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + +C+ AL+ +A I Q+ + D Q+ + ++ +ARE Sbjct: 292 HQLALCQLLPEVALNVNEAQAQHINQLAQHMSP----------DVLQLYYEIVVQAREGV 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 KLASTPMQAL 351 >gi|317492877|ref|ZP_07951301.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918999|gb|EFV40334.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 667 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 139/353 (39%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFSDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D L + + K V++ R + Sbjct: 65 ETGITSTPCGVCDN------CREIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + LE++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDVEQIRTQLEKISTAEGFTAEPRALQLLARAAEGSMRDALSLTDQAIAMGL 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 +I + + ++ E L ++ + D + + + ++ L+ L + Sbjct: 230 GQITAETVGQMLGTLDDEQPLAIIEALVDADGEKVMALVEQAASRGVDWENLLIETLTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ + L + +L Q+ + +L R+ Sbjct: 290 HRIAMLQLLPNALD--SHYISVEQRLRELARTLPPSDL---QLFYQVLLTGRK 337 >gi|157154853|ref|YP_001461658.1| DNA polymerase III subunits gamma and tau [Escherichia coli E24377A] gi|157076883|gb|ABV16591.1| DNA polymerase III, tau and gamma subunits [Escherichia coli E24377A] Length = 643 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|311108171|ref|YP_003981024.1| DNA polymerase III subunits gamma and tau [Achromobacter xylosoxidans A8] gi|310762860|gb|ADP18309.1| DNA polymerase III, subunits gamma and tau [Achromobacter xylosoxidans A8] Length = 728 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++ S D+L L + N V+E+ ++ Sbjct: 65 ETGITSKPCGVCRA------CTEIDSGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + +++ L+ Q + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKQMPADSIVGHLQAVLGQEDVGFEVPALRLIGQAASGSMRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + D + + + ++ D L + D K E ++ + + A L Sbjct: 226 AYSAGNLTEDAVRGMLGTIDQRHLVRLLDALSAGDAKSVLAVADELAIRGLSYAGALADL 285 Query: 292 SGQLEEADQIAQI 304 + L ++ Sbjct: 286 AVLLSRVAIEQRV 298 >gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus PCC 7421] gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus PCC 7421] Length = 632 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 120/328 (36%), Gaps = 38/328 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G I L+ +GR+ HA LF G +G GK T A + Sbjct: 9 KYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCIHGP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C +A+ + D + + + N VD IR + Sbjct: 69 TPDPCGRCEQ------CLAIATGSALDVIEIDAASNT---------GVDNIRELIERAQF 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +V ++D V ++ A N LLK+LEEPP V F+L + +L T+ SRC Sbjct: 114 APVQSRQKVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRF 173 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F + ++ K LE++ I + V A G + A +L Sbjct: 174 DFRRIPLTDMVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLL------------ 221 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 D + + +++ Q+ + ++ + + + + + + L+ + Sbjct: 222 DQLALLEGTIGAERIWQLVGAVPERELLVIGECIQAGDSTRLIEQVRRL-----LDSGKE 276 Query: 301 IAQIYFSLVKRVHAFSMYNL--DRRQMI 326 Q+ L+ + + DRR ++ Sbjct: 277 PLQVLQDLLGFYRDLLIAHTAPDRRDLV 304 >gi|325298548|ref|YP_004258465.1| DNA polymerase III, subunits gamma and tau [Bacteroides salanitronis DSM 18170] gi|324318101|gb|ADY35992.1| DNA polymerase III, subunits gamma and tau [Bacteroides salanitronis DSM 18170] Length = 594 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 118/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + C F +Q + + L + N +V++IR + Sbjct: 66 LHPTSEGEACNAC--ESCVAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S N++ + LE + I + A G + A+ I Sbjct: 171 RCQIYDFNRISVNDMVEHLESVASKEHIDAEPEALTVIAQKADGGMRDALSIFDQVASFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + S I+ +++ EY + I + + + D L + Sbjct: 231 NGHITYRSVIENLNVLDYEYYFKLTDFILENKVPECLLTFNDVLQKGFD 279 >gi|163750244|ref|ZP_02157486.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica KT99] gi|161330100|gb|EDQ01084.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica KT99] Length = 882 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 140/340 (41%), Gaps = 35/340 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + L+ R+HHA LF G +G+GK +L +A + Sbjct: 5 VLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C+ ++A D + + + K VD+ R + Sbjct: 65 EQGITASPCGQCSS------CVEIAEGRFVDLIEVDAASRTK---------VDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL+++ + L Q ++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKSLTQDEISAQLSYVLTQEQLTFDHAALTLLAKAANGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + Q+ L S D+K + +I + + L Sbjct: 226 AFGAGTVQLT----------QVQTMLGSIDEKHVLSLFNALVQGDIENLMRM--IGQILS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ SL++ +H ++ + S+ + Sbjct: 274 FGADPEEVLRSLLELLHQITLSQFAPAAAQLSIYSEQIKA 313 >gi|255974819|ref|ZP_05425405.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2] gi|307278710|ref|ZP_07559778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0860] gi|255967691|gb|EET98313.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2] gi|306504650|gb|EFM73852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis TX0860] Length = 586 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 54/360 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + L+D + + + N V+EIR IR Sbjct: 66 HSQDGEPCNVC------ETCVAITEGRLNDVIEIDAASNN---------GVEEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID V ++ A NALLK+LEEPPQ V+FIL + I TI SR Sbjct: 111 AKYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ ++++ + + + AA G + A+ IL D+ IS Sbjct: 171 QRFDFKRISTQDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSIL----DQTIS 226 Query: 238 SYIDLIHIPR--------------------QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + +++ + + +L + ++ A FL + Sbjct: 227 FSDEKVTLEDAMQVTGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKE-ARRFLEDL 285 Query: 278 IL--KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +L + + +A L E+A + + + L + A +Y L +LS + Sbjct: 286 LLYCRNLLMYQQAPKLLA--EKAGTLTEAFKELATQTPAEKIYQL------IQILSDTQN 337 >gi|331651410|ref|ZP_08352435.1| DNA polymerase III subunit tau [Escherichia coli M718] gi|331051151|gb|EGI23203.1| DNA polymerase III subunit tau [Escherichia coli M718] Length = 645 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|301156533|emb|CBW16004.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Haemophilus parainfluenzae T3T1] Length = 714 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 140/357 (39%), Gaps = 44/357 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKNFSEVVGQSHVLTALENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + + D + + + K V++ R + Sbjct: 65 VNGITADPCGECEN------CKAIEAGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L E + L + I D + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLKALDEPQISAHLNRVLTDENIPFDAPALDKLAKAAQGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF-LIEFILKEICKSAKAAALSGQL 295 + + L LL +DQ I + L + + + K+ + A Sbjct: 226 AMGNGKVSTDVVNTMLG--------LLDEDQPIEIIYALHQGNGERLMKTIQTVA----- 272 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMI-----FHLLSKARECNDLYFRDFYAI 347 E+ ++ +++H ++ L + L+K D+ F FY + Sbjct: 273 EKTGDWDELLAETAEKLHQIALMQLLVKSATDENDHLGFLAKHISPEDVQF--FYQV 327 >gi|222523851|ref|YP_002568321.1| DNA polymerase III subunits gamma and tau [Chloroflexus sp. Y-400-fl] gi|222447730|gb|ACM51996.1| DNA polymerase III, subunits gamma and tau [Chloroflexus sp. Y-400-fl] Length = 598 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 121/319 (37%), Gaps = 36/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + L G E + + L R+ HA LF G +G+GK T+ A V Sbjct: 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCL 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NPD + P +C +A D + + + + +V++ R I Sbjct: 66 NPDPTARPCGVC------EMCAAIAEGRAVDVIEMDAASHT---------SVEDAREIIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V +ID ++ A NALLK+LEEPP LFIL + + +TI SR Sbjct: 111 RVQFRPAEARMKVYIIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F S + + L ++ I+ D + + AA GS+ A+ IL Sbjct: 171 CQRFTFVRHSVSAMAAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILE------- 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 L L ++Q + + + L+ L ++ A G Sbjct: 224 ----QLASFVEGPITLPQVQSLLGMTAAAEVDALITALVNHDLTAALRAVHGVANQG--- 276 Query: 297 EADQIAQIYFSLVKRVHAF 315 + Q LV+R+ A Sbjct: 277 --ADVRQFTRDLVERLRAV 293 >gi|29726698|pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|29726699|pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749629|pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749630|pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749631|pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit gi|30749632|pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 72 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 177 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 232 Query: 237 SS 238 +S Sbjct: 233 AS 234 >gi|298386276|ref|ZP_06995832.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14] gi|298260653|gb|EFI03521.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14] Length = 619 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENRVSDALLLFNDVLNK 276 >gi|296120960|ref|YP_003628738.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] Length = 682 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 28/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + I + L GR+ HA LF G +G+GK ++ +A + Sbjct: 8 VLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKALNC 67 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +++ D + + N +D+IR +R Sbjct: 68 PNAVEAVPCNTC------EICRAVSAGQDVDVSEIDGASNR---------GIDDIRTLRA 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ + ++V +ID V + + A NALLK+LEEPPQ V FI + + TI SR Sbjct: 113 NVNVKSMRTRYKVYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSR 172 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +++ ++ + L Q+ D + V A GS+ + + D+++ Sbjct: 173 CQRFDFGTVNIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLF----DQVL 228 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + L ++ ++ L+ + A + L + IL + A L Sbjct: 229 AFGHQHVTVADVHRLLGTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQL 288 Query: 292 SGQLEEA 298 L + Sbjct: 289 ISYLRDL 295 >gi|225850089|ref|YP_002730323.1| DNA polymerase III, subunits gamma and tau [Persephonella marina EX-H1] gi|225646125|gb|ACO04311.1| DNA polymerase III, subunits gamma and tau [Persephonella marina EX-H1] Length = 479 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 125/312 (40%), Gaps = 37/312 (11%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P +++ G E + K L R+ HA +F G +G+GK T+ + Sbjct: 7 ARKYRPKNFEQVIGQESVVKTLKNAIELERISHAYIFAGSRGLGKTTVSRILTKSLNCEK 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C ++ + D + + N +D+IR +R + Sbjct: 67 GVTPQPCGKCEN------CVEIEKGSFPDMYEIDAASNR---------GIDDIRSLRDNV 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + G ++V +ID + R A NALLK+LEEPP +FIL + I TIRSRC Sbjct: 112 NYAPIKGRYKVYIIDEAHMLTREAFNALLKTLEEPPPHNIFILATTELHKIPDTIRSRCQ 171 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-----CD 233 + F + + + + L+++ KI + D + A+ G + + +L Sbjct: 172 TFIFRPPTSSQIKEYLKRILNEEKIEYEERALDLLAEASEGGIRDSASLLDQAVTFGKGK 231 Query: 234 KIISSYIDLIHIP-----------RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 I S L+ + +E +++M I ++L S+ + + I I Sbjct: 232 VDIKSVEQLLGLIPETVIKDFVNHLKEKNIKEMILITEKLESEGYD--LNVFWKQINDLI 289 Query: 283 CKSAKAAALSGQ 294 + ++ G Sbjct: 290 HRELVNLSIDGS 301 >gi|307720523|ref|YP_003891663.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM 16294] gi|306978616|gb|ADN08651.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM 16294] Length = 563 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 138/347 (39%), Gaps = 36/347 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E I + LS S R+ HA LF G +G GK + +A ++ Sbjct: 7 VLARKYRPSNFDELIGQETIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ + D + + + + K +D+IR + Sbjct: 67 EEGMSHQPCDKCSN------CVMAKENRHMDIIEMDGASSRK---------IDDIRDLIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V + + A NALLK+LEEPP+ V F+L + + +TI SR Sbjct: 112 QTKYKPAIARYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFVLATTDPLKLPATILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI- 235 +F S++ N + L + I + + + + GS+ + +L Sbjct: 172 TQHFRFKSIATNKIVDHLAHILQLEGIEYENDALEILARSGSGSLRDTLTLLDQAIIYSK 231 Query: 236 ----ISSYIDLIHIPRQEYALQKMQQIADELLSQDQ-------KIAFDFLIEFILKEICK 284 +++ D++ + ++ + ++ D + ++D K D+ E ++ E+ Sbjct: 232 NYVNVATVTDMLGLVDPKF----ISELFDAVFAKDYARLVEYTKTLEDYESEMVVDELIA 287 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 K + + + + +F ++ N D + ++ Sbjct: 288 YLKDKMYNQDALFSTLVLERFFRILSESKYLFSINAD-GSFVLSMIF 333 >gi|145636909|ref|ZP_01792574.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittHH] gi|145269990|gb|EDK09928.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae PittHH] Length = 688 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VHGVTATPCGECEN------CKAIEQGNFIDLIEIDSASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L E + + L + I + + AA GS+ ++ + Sbjct: 170 CLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGD 229 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF--ILKEICKSA 286 + ++S+ + L+ L + Q ELL + + D ++ +L E + Sbjct: 230 RQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKL 289 Query: 287 KAAALSGQLEE 297 L L + Sbjct: 290 HQIVLMQLLPQ 300 >gi|194437483|ref|ZP_03069580.1| DNA polymerase III, tau subunit [Escherichia coli 101-1] gi|194423652|gb|EDX39642.1| DNA polymerase III, tau subunit [Escherichia coli 101-1] gi|323972324|gb|EGB67534.1| DNA polymerase III [Escherichia coli TA007] Length = 643 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 130/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + Q ++ L + D A + + + A ++ Sbjct: 226 ASGDGQVST----------QAVSAMLGTLDDDQALSLVEAMVEANGER--VMALINEAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + ++ +H +M L + Sbjct: 274 RGIEWEALLVEMLSLLHRIAMVQLSPAAL 302 >gi|169633760|ref|YP_001707496.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii SDF] gi|169152552|emb|CAP01532.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii] Length = 682 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 145/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS SGR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|253572655|ref|ZP_04850056.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|251837787|gb|EES65877.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] Length = 619 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MTPTTDGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S + L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENRVSDALLLFNDVLNK 276 >gi|93006233|ref|YP_580670.1| DNA polymerase III, subunits gamma and tau [Psychrobacter cryohalolentis K5] gi|92393911|gb|ABE75186.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter cryohalolentis K5] Length = 685 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 48/370 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C+ + D + + + K V++ R + Sbjct: 67 DTGITSTPCGVCDN------CVAIDQGRFIDLIEIDAASRTK---------VEDTRELLD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NVPYAPSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL LS++ L + L Q ++ + AA GSV A+ + Sbjct: 172 CLQFVLRPLSQSLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQ 231 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQ-----QIADELLSQ-----DQKIAFDFLIEFI 278 D ++S + LI + + +A + D FD L E + Sbjct: 232 GALDDVTVNSMLGLIDAADLVSLITDIYNHDKPAVAAHIEQMRAQMVDASSMFDGLAELL 291 Query: 279 LK-EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + +C+ AL+ +A I Q+ + D Q+ + ++ +ARE Sbjct: 292 HQLALCQLLPEVALNVNEAQAQHIDQLAQHMSP----------DVLQLYYEIVVQAREGV 341 Query: 338 DLYFRDFYAI 347 L A+ Sbjct: 342 KLASTPMQAL 351 >gi|187735722|ref|YP_001877834.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila ATCC BAA-835] gi|187425774|gb|ACD05053.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila ATCC BAA-835] Length = 732 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 127/339 (37%), Gaps = 35/339 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + + L R+ HA LF G +G GK + +A + Sbjct: 5 VFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRLAHAYLFVGPRGTGKTSTARIFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + DP +++A D L + + N +D IR +R Sbjct: 65 SGGP------KVDFDPHEDICEEIAEGRSLDVLEIDGASNR---------GIDHIRDLRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G +R++ ID V + + + NALLK+LEEPP V FI + IL TI SR Sbjct: 110 NVRFAPSRGNFRIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + + L + + V A G + A +L D+++ Sbjct: 170 CQRFDLRPIPSEIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSML----DQLV 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S D I Q++ I + A ++ L + A +G+ Sbjct: 226 SFCGDHIEE-------QQVLHIFGITSRETVAHALALILNKELPSLLHLLHEQAEAGR-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++Q ++ V + +D L ++E Sbjct: 277 ---DMSQFLSEIISAVREILVSKVDPEASFDSLPESSKE 312 >gi|329956773|ref|ZP_08297342.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT 12056] gi|328523812|gb|EGF50899.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT 12056] Length = 647 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 25/289 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 46 VSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 105 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C+ F +Q + + L + N +VD+IR++ Sbjct: 106 MAPTAEGEACNQC--ESCTAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 150 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 151 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 210 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L + I + + + A G + A+ I Sbjct: 211 RCQIYDFNRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 270 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S I+ +++ EY + + +S + D L + Sbjct: 271 GGHITYQSVIENLNVLDYEYYFKLTDHFLENKVSDALLLLNDVLNKGFD 319 >gi|295100449|emb|CBK97994.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium prausnitzii L2-6] Length = 626 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 19/269 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + I L SGR+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPQRFEDVVAQRGIVTALRNQIASGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + ++ D + + + N VD+IR +R Sbjct: 65 HPHNGDPCGEC------EICRGIDNGSILDVVEMDAASNN---------GVDDIRDLRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + +++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 110 TAYTPSACHYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + +E Q + + + A G++ A+ IL Sbjct: 170 QRYDFTRIGPEDIAQRVEYIAGQEGLELTTGGAELISRLADGAMRDALSILDTCAGVTAK 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQD 266 D++ + I+D L +QD Sbjct: 230 IDADVVRRMAGVTDRSYLFHISDALEAQD 258 >gi|317405924|gb|EFV86203.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 400 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 133/345 (38%), Gaps = 35/345 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 13 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 72 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++ + D+L L + N V+E+ ++ Sbjct: 73 ETGITSKPCGVCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 118 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 177 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + +++ L+ + ++ + AA GS+ A+ + D+ I Sbjct: 178 CLQFNLKQMPADSIVGHLQAVLGEEQVGFEVPALRLIGQAASGSMRDALSL----TDQAI 233 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + D + + + ++ D L + D K E + + + A L Sbjct: 234 AYSAGNLTEDAVRGMLGTIDQRHLVRLLDALSTGDAKGVLAVADELATRGLSYAGALADL 293 Query: 292 SGQLEEADQIAQIYF-------SLVKRVHAFSMYNLDRRQMIFHL 329 + L ++ + + D Q+ + + Sbjct: 294 AVLLSRVAIEQRVSGVTPAEDPLVADIARLAQTLHPDAVQLFYSV 338 >gi|262279434|ref|ZP_06057219.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] gi|262259785|gb|EEY78518.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202] Length = 689 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 145/352 (41%), Gaps = 30/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I+ + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGTILEKEQIVSDQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + Q +++M + D + D +A + ++ + AL L Sbjct: 225 AYGQGAV----QHQDVKEMLGLIDRTIIYDLILAIHQNQREKVSQLLLQFRHQALDVSLV 280 Query: 297 EADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I+ ++ ++++ + S+ D LSK DL + +Y I Sbjct: 281 LDQLISTLHELAILQYLPDLSLKYSDEINRKIMQLSKLISAQDL--QLYYQI 330 >gi|229825861|ref|ZP_04451930.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC 49176] gi|229789881|gb|EEP25995.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC 49176] Length = 522 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 46/353 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + + L ++ HA +F G +G GK ++ +A V Sbjct: 6 LYRKFRPKGFDEVKGQDSVVTVLKNQIKHEKIGHAYMFSGTRGTGKTSVAKIFAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P +C K++ D + + + N VD +R + Sbjct: 66 NTKDGSPCGVC------ETCKKIGEGRTLDVIEIDAATNN---------GVDNMREVIEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEPP+ +FIL + +L TI+SRC Sbjct: 111 VKYSPTDTKYKVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F +S + L++L + F+ GS+ A+ +L Sbjct: 171 QKYDFRRISIETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFSFD 230 Query: 231 ---DCDKII-------SSYIDLIHIPRQEYALQKMQQIADELLSQDQKI---AFDF---L 274 DK++ + + ++I + + IA+E+ I DF Sbjct: 231 EKLTYDKVLNVLGSVDTDLFNKLYIAIKRGDVTTCMDIAEEISMNGIDIGQFTLDFTWYF 290 Query: 275 IEFILKEICKSA--KAAALSGQLEEADQIAQIYF--SLVKRVHAFSMYNLDRR 323 +L + K+A + + +L E ++A+I L + + FS + D + Sbjct: 291 RNLLLLRVSKAAADRIEISTDKLAELKEVAKIGEENDLYRYIRIFSKLSADIK 343 >gi|213418060|ref|ZP_03351135.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 314 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 124/313 (39%), Gaps = 33/313 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 72 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LE + I + AA GS+ A+ + D Sbjct: 177 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGD 236 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 + ++ + AL ++ + D + + I ++ L+ +L + Sbjct: 237 GQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 296 Query: 283 CKSAKAAALSGQL 295 + A L Sbjct: 297 HRIAMVQLSPAAL 309 >gi|71892083|ref|YP_277813.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796189|gb|AAZ40940.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 698 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 141/334 (42%), Gaps = 35/334 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I + ++ + ++HHA + G +G+GK T+ +A + Sbjct: 5 VLARKWRPKKFSDIVGQEHIIQAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + CN K + D + + + K V++ R Sbjct: 65 EQGTTYTMCGQCNN------CKDIELGCFIDLIEIDAASRTK---------VEDTREFLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++R++ NALLK+LEEPP V FIL++ + TI SR Sbjct: 110 NVQYMPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPTHVKFILVTTEYQKLPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL L+ + + L + I S + + A+ GS+ A+ + Sbjct: 170 CLQFYLKPLNISQIINQLTYIFHKENINIETSALESLAYASKGSMRDALSLAEQAIVLGN 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++I ++ I ++ I E+ L ++ + DE + + +D++ IL + Sbjct: 230 NEITNNVINNMFGISNIEHPLCLIESLIDEDIHNIMHQIENLTVLGVHWDYVFNEILTIL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 K A LS +++ D + + +R+ S Sbjct: 290 QKIAIGQFLSNSVQKEDN--NVTQHINQRMRRLS 321 >gi|238537901|pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537902|pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537903|pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537906|pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537907|pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537908|pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 87 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 131 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 132 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSR 191 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 192 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 247 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + E + I A + Sbjct: 248 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 307 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 308 LGLLHRIAMVQLSPAALGNDMAAIEL 333 >gi|149927016|ref|ZP_01915274.1| AAA ATPase, central region [Limnobacter sp. MED105] gi|149824237|gb|EDM83457.1| AAA ATPase, central region [Limnobacter sp. MED105] Length = 586 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 87/354 (24%), Positives = 137/354 (38%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + K LS + R+HHA LF G +G+GK T+ A V Sbjct: 9 LARKWRPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARAVNCE 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ P C +++ D L + + N VDE+R + Sbjct: 69 QGISRTPCGKCQA------CVEISQGRFVDLLEVDAATNT---------RVDEMRALLEN 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V +ID V ++ +A NA+LK+LEEPP VLFIL + I +T+ SRC Sbjct: 114 AMYAPTAGRYKVYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRC 173 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L L + L L + +I + AA GSV A+ + D+ I+ Sbjct: 174 LQFALRQLPPDQLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSL----TDQAIA 229 Query: 238 S-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL---------IEFILKEIC 283 D + Q + Q+ L D K + IL E+ Sbjct: 230 YSAGHVTEDTVRTMLGAIDQQVVHQLLQALAQGDGKALLELSNALAAASAPFGAILDELA 289 Query: 284 KSAKAAAL---SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 A ++ +G L+ D +L A + Q+I+ + + AR Sbjct: 290 AIAYRLSVAHFAGGLDADDPDQAALQNLQGAFGAEDL------QLIYQIATHAR 337 >gi|312889163|ref|ZP_07748720.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter paludis DSM 18603] gi|311298325|gb|EFQ75437.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter paludis DSM 18603] Length = 600 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 113/290 (38%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G + I L + ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFDTVVGQQHITNTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + C D C F + + L + N +V++IR + Sbjct: 66 TNLQAGIEACGEC--DSCKAFQR----GNSFNVHELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQAGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + +++ L ++ I + A G + A+ + Sbjct: 171 RCQIFDFNRIKVDDMAGHLASIAQKESIGYEVDGLHIIAQKADGGLRDALSMFDQIVNFS 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S ID ++I +Y + LLS+D E + K Sbjct: 231 GGNVTYRSVIDNLNILDYDYYF----NVTQSLLSEDTAKTLLLFDEILSK 276 >gi|254468598|ref|ZP_05082004.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13] gi|207087408|gb|EDZ64691.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13] Length = 512 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 127/300 (42%), Gaps = 28/300 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I + L R+HHA L G +G+GK T+ +A + + Sbjct: 6 LARKWRPKNFETIVGQEFIVEALKNSILGDRLHHAYLLSGTRGVGKTTIARIFAKCLNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ ++ D + L + N + VD +R + Sbjct: 66 TGSNPTPCCECSS------CVEIDQSKSIDVIELDAASNTQ---------VDNMRELLEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +++ +ID V +++++ NA+LK+LEEPP+ V+FIL + I T+ SRC Sbjct: 111 ANYQPTSSKYKIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L ++ + + L+ + I D + + A GS+ A+ + D++I+ Sbjct: 171 LHFNLMQMTNDEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSL----ADRVIN 226 Query: 238 SYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + + L + ++ +L +++ D L + I + LS Sbjct: 227 YTNGNVSLEKLTQILGITSDGVIDELLTNILDNNKQKVLDLLNKLKEHHISYESALKVLS 286 >gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] Length = 478 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + ++K + + H +F G +G GK TL A + Sbjct: 3 VLYRKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ D + L + N +DEIRRIR Sbjct: 63 ENRKGVEPCNSCRA------CREIDEGTFMDVIELDAASNR---------GIDEIRRIRD 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + A NALLK+LEEPP V+F+L + + TI SR Sbjct: 108 AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + K L++ I F+ A G + A+ +L K Sbjct: 168 CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQ-VWKFS 226 Query: 237 SSYIDL--IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK----EICKSAKAAA 290 IDL +H +Q ++ + + S D K F L + E+ Sbjct: 227 EGKIDLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVED 286 Query: 291 LSGQLEE--------ADQIAQIYFSLVKRVHAF 315 L LE A+ I Q+ L+ + Sbjct: 287 LVEDLERERGVYQVSANDIVQVSRQLLNLLREI 319 >gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] Length = 558 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 127/324 (39%), Gaps = 38/324 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNNCD------ICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRANYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + ++ L + I + + A G + A+ IL Sbjct: 170 QRFEFKSIKQKDIKAHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILD-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA--LSGQL 295 + + + Q IA+E+ +A D +++ I + A+AA L Sbjct: 222 ---QALSLSPDD---QITLSIAEEITGSISILALD---DYVANIINQEAQAALSNLETIF 272 Query: 296 EEADQIAQIYFSLVKRVHAFSMYN 319 + +++ L+ M Sbjct: 273 DNGKSMSRFATDLLAYFRELLMVQ 296 >gi|160945467|ref|ZP_02092693.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii M21/2] gi|158443198|gb|EDP20203.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii M21/2] Length = 628 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 19/263 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L +GR+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + +L D + + + N VD+IR +R Sbjct: 65 HPVNGDPCGEC------EICKGIDNGSLLDVVEMDAASNN---------GVDDIRDLRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 110 TAYTPSACQYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + +E + K+ + + A G++ A+ IL Sbjct: 170 QRYDFTRIGPEDIARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAK 229 Query: 238 SYIDLIHIPRQEYALQKMQQIAD 260 D++ + QI+D Sbjct: 230 IDADVVRRMAGVTDRSYLFQISD 252 >gi|311280618|ref|YP_003942849.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae SCF1] gi|308749813|gb|ADO49565.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae SCF1] Length = 641 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 129/325 (39%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ SGR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLASGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIELGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE + KI + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRAQLEHILGEEKINFESRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + L + + + L++ D + + + + A + Sbjct: 226 ASGDGQLTAQTVSTMLGTLDDAQALSLIEALVAADGERVMTLIHDAASRGAEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFS 316 L + +L + A Sbjct: 286 QSLLHRIAMVQLSPSALGSDMAAVE 310 >gi|257465337|ref|ZP_05629708.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor 202] gi|257450997|gb|EEV25040.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor 202] Length = 694 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 71/360 (19%), Positives = 143/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C+ +L + + LE + +I + + + AA GS+ ++ + + Sbjct: 170 CMQFHLRALDQTQIAHHLEFILKEEQIPYETAAIEKLAKAAEGSIRDSLSLTDQAIAVSN 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + +S+ ++ + L+ + +A+ + A + Sbjct: 230 ANITLSAVSQMLGLIDDHQPLELIMALANADGEK---------------------VMAVI 268 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNL----DRRQMIFHLLSKARECNDLYFRDFYAI 347 E+ Q+ + + +H +M L ++ + H L+K D+ F FY + Sbjct: 269 QNVAEKGVDWNQLLNDVAEVLHQIAMLQLVKSAEQEESAIHFLAKQMAPEDIQF--FYQV 326 >gi|120601240|ref|YP_965640.1| subunits gamma and tau [Desulfovibrio vulgaris DP4] gi|120561469|gb|ABM27213.1| DNA polymerase III, tau subunit [Desulfovibrio vulgaris DP4] Length = 622 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 41/325 (12%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E ++ LS+ R+ A LF G +G+GK T+ +A + Sbjct: 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCATAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C +++ D + + + N +D+ +R++ + Sbjct: 69 TGEPCNTCEQ------CRKVTQGMHVDVVEIDGASNR---------GIDDAKRLKEAIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G ++V +ID + R A NALLK+LEEPP +V F+L + TI SRC Sbjct: 114 APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 Query: 185 KFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F LS E +L K L + + + + A GSV ++ +L + Sbjct: 174 TFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIAD-----------ELLSQDQKIAFDFLIEFILKE--- 281 I ++ + QE L+ M+ +A ELL + + F FL E + Sbjct: 234 IDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGF-FLRELVATWRNL 292 Query: 282 -ICKSAKAAALSGQLEEADQIAQIY 305 + + A AAL+ L+ + A+ + Sbjct: 293 FMLRQAGEAALA-SLDLPEDEARQW 316 >gi|238893440|ref|YP_002918174.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae NTUH-K2044] gi|238545756|dbj|BAH62107.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 635 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|152969025|ref|YP_001334134.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953874|gb|ABR75904.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 635 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|149189267|ref|ZP_01867553.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1] gi|148836826|gb|EDL53777.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1] Length = 727 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 141/356 (39%), Gaps = 47/356 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L R+HHA LF G +G+GK ++G +A + Sbjct: 6 LARKWRPRKFSEVVGQTHVLTALENALDQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C ++ D L + + K V++ R + Sbjct: 66 TGITSTPCGTC------STCIEIDEGRSVDLLEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 111 VQYKPARNRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPMTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L ++ N+ + L+ + ++ + AA GS+ A+ + D+ I+ Sbjct: 171 LQFHLKPITVENIQQQLDHILEKEQVQSESRALALLAHAADGSMRDALSL----TDQAIA 226 Query: 238 SYIDLIHIPRQEYALQKMQ-----QIADELLSQDQ-------------KIAFDFLIEFIL 279 + P L + QI + L + D + +D L+ + Sbjct: 227 LGNGNVSTPVVSQMLGTLDTAQAIQILESLTTGDAHQVMTKLEHLAENGVDWDTLLSELA 286 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 ++ + A AL ++ A ++ L + + A + Q+ + + K R+ Sbjct: 287 LQLHRIAMTQALPSSIDAAIADSEKIQHLARTLQATDV------QLYYQIALKGRQ 336 >gi|46446112|ref|YP_007477.1| DNA polymerase III subunits gamma and tau [Candidatus Protochlamydia amoebophila UWE25] gi|46399753|emb|CAF23202.1| probable DNA-directed DNA polymerase III subunits gamma/tau dnaX [Candidatus Protochlamydia amoebophila UWE25] Length = 522 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 24/260 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R F P + +FG E + L R+ A LF G +G GK TL +A + Sbjct: 6 VIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFAKAINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C +++ S + D L + + + +++IR+I Sbjct: 66 QNSTEDFEPCNQCTS------CREITSGSSLDVLEIDGASHR---------GIEDIRQIN 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A +G ++V +ID V + + A NALLK+LEEPP KV FI + + +L TI S Sbjct: 111 ETVGYAATSGQYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + + L +QL+I + + A G + A + D+I Sbjct: 171 RCQRFNLSRIPLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLF----DQI 226 Query: 236 ISSYIDLIHIPRQEYALQKM 255 ++ I+ + L M Sbjct: 227 VAFSEGKINAATVQSILGLM 246 >gi|330002982|ref|ZP_08304507.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3] gi|328537093|gb|EGF63372.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3] Length = 635 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + ++ L + D A + + + + A ++ Sbjct: 226 ASGEGQLT----------AASVSTMLGTLDDDQALSLIEALVAADGER--VMAGVNDAAA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + + +H +M L + Sbjct: 274 RGVEWEALLVEMQSLLHRIAMVQLSPSAL 302 >gi|114327740|ref|YP_744897.1| DNA polymerase III subunit delta' [Granulibacter bethesdensis CGDNIH1] gi|114315914|gb|ABI61974.1| DNA polymerase III, delta' subunit [Granulibacter bethesdensis CGDNIH1] Length = 342 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 18/337 (5%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL+GHE E L+ SGR+HHA L G GIGKATL +R+A +L + Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65 Query: 68 PVRMCNPD------PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P P +++A+ D L + + + + RT I VD++R I F Sbjct: 66 SQHEKKADSPLWLSPEHPVFRRVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREIASF 125 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L LT G WRV+++D D +NR+AANALLK LEEPP + + +L + +L TIRSRC Sbjct: 126 LHLTPAEGGWRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTIRSRC 185 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 ++ +L + L L ++RD + A G+ RA+++ D + D Sbjct: 186 RMLRLQALEAAPMQDVLATLLPDLAAAERDLLAGLAEGAPGRALQLAKEDGLALSRLAED 245 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ------- 294 ++ P + +AD L D AF + + + + + AA SG Sbjct: 246 ILRAP---PSASHRYDLADMLTKGD--TAFSTFMLLLRATLARMVRQAARSGSGSDEFLC 300 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 L D + ++ +L + ++LD+RQ IF LS Sbjct: 301 LRPLDAWSDVWHALGRLQDETERFHLDKRQAIFAGLS 337 >gi|251790619|ref|YP_003005340.1| DNA polymerase III subunits gamma and tau [Dickeya zeae Ech1591] gi|247539240|gb|ACT07861.1| DNA polymerase III, subunits gamma and tau [Dickeya zeae Ech1591] Length = 678 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 141/353 (39%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQCDT------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + LEQ +++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDAEQIRRQLQHVLEQEQLIAEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIAD-------ELLSQDQKIAFDF--LIEFILKEI 282 ++ ++ + ++ E L ++ + LL Q D+ L+ L + Sbjct: 230 GQVTAAAVSQMLGTLDDEQPLALIEALVKGDGAGVMALLGQAAARGVDWEALLVETLTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L D+ Q+ L + + Q+ + L R+ Sbjct: 290 HRIAMLQLLPSAL--GDEYNQVAPRLRELARVIPPAEV---QLYYQTLLVGRK 337 >gi|170767813|ref|ZP_02902266.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii TW07627] gi|170123301|gb|EDS92232.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii TW07627] Length = 640 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 128/326 (39%), Gaps = 28/326 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAI 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + + + + ++ + + + + + I A + Sbjct: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINDAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 G L + +L + A + Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIEL 311 >gi|152978645|ref|YP_001344274.1| DNA polymerase III subunits gamma and tau [Actinobacillus succinogenes 130Z] gi|150840368|gb|ABR74339.1| DNA polymerase III, subunits gamma and tau [Actinobacillus succinogenes 130Z] Length = 699 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 138/335 (41%), Gaps = 45/335 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E I L+ R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQNFHQVIGQEHILTALANGLKENRLHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + + D + + + K V++ R + Sbjct: 65 IHGVTAEPCGEC------EHCKAIENGNFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI--------- 227 C+ +LS+ + + L Q KI + + AA GSV ++ + Sbjct: 170 CMQFHLKALSQQQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIAMSN 229 Query: 228 --LHYDCDKIISSYID---------LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + D I+ +D +H E +Q +Q +AD D + LIE Sbjct: 230 ADIRVDVVNIMLGLLDDNQPIEILYALHQGNGEKLMQGIQAVADNGADWD-----ELLIE 284 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + + + + A L +++E Q+ + + Sbjct: 285 -VGEALHQIAMLQLLPNRIDEESQLGFLAKHISPE 318 >gi|239501566|ref|ZP_04660876.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB900] Length = 698 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGVILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINTKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|323342245|ref|ZP_08082477.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463357|gb|EFY08551.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix rhusiopathiae ATCC 19414] Length = 600 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 71/331 (21%), Positives = 133/331 (40%), Gaps = 36/331 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + L ++ HA LF G +G GK ++ +A V Sbjct: 6 LYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + C+ +A D + + + N VDEIR + Sbjct: 66 -NPDQVICGTCDN------CLAVADGTHPDLIEIDAASNN---------GVDEIRGLIEK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T G ++V +ID V +++ A NALLK+LEEPP V+FIL + +L TI SRC Sbjct: 110 VKYTPILGKYKVYIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRC 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + E ++ K L+ + + + G + A+ IL Sbjct: 170 QRYDFNRIGEVDIAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILE-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + + ++ + QD+ FD + E ++ + ++ E+ Sbjct: 222 ---QAIVLADDQITVNQIYDTNGIITDQDKINLFDSIREQQMEALVNQ-----IAMMNEK 273 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + I ++ LV + +Y+ + + + Sbjct: 274 SVNIDRLMMDLVSGLKDSIIYSHTKSDALVN 304 >gi|207723139|ref|YP_002253538.1| dna polymerase III subunits tau and gamma protein (partial sequence n terminus) [Ralstonia solanacearum MolK2] gi|206588332|emb|CAQ35295.1| probable dna polymerase III subunits tau and gamma protein (partial sequence n terminus) [Ralstonia solanacearum MolK2] Length = 513 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 140/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 1 MLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 60 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 61 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 105 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 106 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 165 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 166 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHESNALRLLAAAAQGSMRDALSLTDQA 225 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE + +I A Sbjct: 226 IAYSAGEVTETAVRGMLGAIDQSYLVRLLDALADENGAALIEIADEMAGRSLSFSGALQD 285 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 286 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 341 >gi|240948992|ref|ZP_04753346.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor NM305] gi|240296579|gb|EER47197.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor NM305] Length = 698 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 41/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 ETGITATPCGECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L + + LE + +I + + + AA GS+ ++ + D+ I Sbjct: 170 CMQFHLRALDQTQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + ++ L D + ++ + K A + E Sbjct: 226 AVTNANVTLS----------AVSQMLGLIDDHQPLELIMALANADGEK--VMAVIQNVAE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL----DRRQMIFHLLSKARECNDLYFRDFYAI 347 + Q+ + + +H +M L ++ + H L+K D+ F FY + Sbjct: 274 KGVDWNQLLNDVAEVLHQIAMLQLVKSAEQEESAIHFLAKQMAPEDIQF--FYQV 326 >gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51] gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 557 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 29/328 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L+ ++ HA LF G +G GK T A + Sbjct: 6 LYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C F + + + + + N +DEIR +R Sbjct: 66 HREGVEPCNQC------AFCLSIDQGSAMEVFEIDAASNR---------GIDEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+A ++V +ID V + A NALLK+LEEPP++V+FIL + I TI SR Sbjct: 111 VRLSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRV 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F+ + ++ L++ + + + G + A+ IL D Sbjct: 171 QRFEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGK 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + ++ + +E++ Q+ D LL+ D A L E I + + L Sbjct: 231 LGVEQVYQVLGMVGEEFSA----QLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLD 286 Query: 294 QLEEADQIA--QIYFSLVKRVHAFSMYN 319 + +A A Q + + + Y Sbjct: 287 YMRQALLYASTQAFPQVAPHLREHLAYQ 314 >gi|254458186|ref|ZP_05071612.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales bacterium GD 1] gi|207085022|gb|EDZ62308.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales bacterium GD 1] Length = 585 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 72/355 (20%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + I + LS S R+ HA LF G +G GK + +A ++ Sbjct: 7 VLARKYRPSNFDELIGQDTIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C K + D + + + + K +D+IR + Sbjct: 67 EQGMSHEPCGVCQN------CKLAVENRHMDIVEMDAASSRK---------IDDIRDLIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 112 QTKYRPASARFKIFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI- 235 +F S++ + L + +I + + + GS+ + +L Sbjct: 172 TQHFRFKSIATKKIIDHLAHILNLEEIKYETDALEILARSGNGSLRDTLTLLDQAIIYSK 231 Query: 236 ----ISSYIDLIHIPRQEYALQKMQQI-ADELLSQDQ--KIAFDFLIEFILKEICKSAKA 288 +++ D++ + ++ + + A + S Q KI D+ E ++ E+ K Sbjct: 232 NHVDVNTVTDMLGLVDPKFIMDLFSAVFAKDYASLVQYTKILEDYEAEMVVDELIAYLKE 291 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 + + + +F ++ + N D ++ + K E + D Sbjct: 292 RMYNQDALFSTLVLDRFFRILSDSKSLFSINADGSFVLSLIFFKMVEALRIKEVD 346 >gi|299769631|ref|YP_003731657.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1] gi|298699719|gb|ADI90284.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1] Length = 717 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 144/352 (40%), Gaps = 30/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + + LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITRHLGAILEKEQINADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H +++M + D + D +A + ++ + AL L Sbjct: 225 AYGQGSVHHQD----VKEMLGLIDRTIIYDLILAIHQNQREKVSQLLLQFRHQALDVSLV 280 Query: 297 EADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I+ ++ ++++ + S+ D LSK DL + +Y I Sbjct: 281 LDQLISTLHELAILQYLPDLSLKYSDEINRKIMQLSKLISAQDL--QLYYQI 330 >gi|300715625|ref|YP_003740428.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661] gi|299061461|emb|CAX58575.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661] Length = 644 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 133/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +L + L++ KI + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRGQLQHVLQEEKIEAEPRSLQLLARAADGSMRDALSLADQAIAMGQ 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ + ++ ++ E L ++ + + Q + + ++ L+ +L + Sbjct: 230 GQVTTVTVNAMLGTLDDEQPLALIEALVNAEGEQVMSLLNQAASRGVEWEALLVEMLTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L D A + L + Sbjct: 290 HRVAMIQLLPSAL--GDDYAAVEQRLRELARVLPP 322 >gi|312864982|ref|ZP_07725210.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei F0415] gi|311099093|gb|EFQ57309.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei F0415] Length = 566 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 131/319 (41%), Gaps = 36/319 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + Q L G E + L Q SG++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFQELVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNDCD------ICRDITEGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + + ++ I D + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKQTAIRQHMAEILDKEGIAYEDQALNLIARQAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF-DFLIEFILKEICKSAKAAALSGQLE 296 D Q IA+E+ + A D+L I + + L+ + Sbjct: 226 LSADN----------QVTAAIAEEITGSVGQAALDDYLANLIQHDSLAALTN--LNTIFD 273 Query: 297 EADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 274 SGKGMSRFATDLLDYLRDI 292 >gi|298244237|ref|ZP_06968043.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer DSM 44963] gi|297551718|gb|EFH85583.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer DSM 44963] Length = 762 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 139/357 (38%), Gaps = 40/357 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + + L SG + HA LF G +G GK T A + Sbjct: 6 LYRKWRSQTFSEVVGQEAVIQTLRNALKSGTLAHAYLFTGPRGTGKTTTARLLAKTINCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ + + + + + N +D IR +R Sbjct: 66 NPHNGEPCNECQQ------CREITAGNSFNVIEIDAASNR---------GIDSIRELREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V ++D + A NALLK+LEEPP +F++ + +L T+ SRC Sbjct: 111 VMVPPTGGKYKVYILDEAHMLTVEAFNALLKTLEEPPPHAIFVMATTDVHKMLPTVLSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +Q ++ + + AA G + A+ +L D+ I+ Sbjct: 171 QRYDFKRFTMRQLITHLSRVAQQEQVQLEGGAAELIARAAAGGMRDALSLL----DQAIA 226 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFI-----LKEICKSAK 287 + I + + + L + +Q+I + + D + E + L+++ Sbjct: 227 YAGNTISLTQVQTMLGVADPRAIQKIISAIANLDSPAGLHLIAELMESGADLRQLNSQVA 286 Query: 288 AAALSGQLEEA-DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 + L A IA+I S + ++ R L + EC ++ ++ Sbjct: 287 EFWRAMMLARAGANIAEITDSTDEEINEI------REAARLFRLEELIECARIFAQN 337 >gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] Length = 646 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 117/310 (37%), Gaps = 30/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 72 KTKDIDQPTTVL--DSLGEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 121 QIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L Q+ K+ D + AA GS A+ I D+ I Sbjct: 181 CQRFDLRRIESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M +A DQ D EFI+K +A S Sbjct: 237 AHSNGNV----NAIAVRTMLGLA------DQARIIDLF-EFIMKGDVVNALHELRSQYEA 285 Query: 297 EADQIAQIYF 306 AD + + Sbjct: 286 GADPLTILTE 295 >gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] Length = 581 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + AL+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALE--ALNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|291616582|ref|YP_003519324.1| DnaX [Pantoea ananatis LMG 20103] gi|291151612|gb|ADD76196.1| DnaX [Pantoea ananatis LMG 20103] Length = 672 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 40/349 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 21 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 80 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 81 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 125 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 126 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 185 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LEQ +I + AA GS+ A+ + D+ I Sbjct: 186 CLQFHLKALEVDQIRQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL----TDQAI 241 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + L + D + L + E A L+ Sbjct: 242 AMGEGSVTSAT----------VGTMLGTLDDEQPLGLLEAVV--EGNGEQMMALLAQAAS 289 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFY 345 + + +++ +H +M Q++ L+ E N L R+ Sbjct: 290 RGVEWEALLVEMLRLLHRIAMV-----QLLPTSLNDDEESNALRLRELA 333 >gi|265766021|ref|ZP_06094062.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16] gi|263253689|gb|EEZ25154.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16] gi|301164016|emb|CBW23572.1| putative DNA polymerase III [Bacteroides fragilis 638R] Length = 614 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MNLTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENKVSDALLLFNDVLNK 276 >gi|219870298|ref|YP_002474673.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis SH0165] gi|219690502|gb|ACL31725.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis SH0165] Length = 670 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 144/360 (40%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C K + D + + + K V++ R + Sbjct: 65 ETGISADPCGQCAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L ++ + + LE Q +I S + AA GS+ A+ + D+ I Sbjct: 170 CMQFHLRALEQSQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P L + ++ L + D + A A + Sbjct: 226 AVSNVNITLPIVSQMLGLIDDHQPLELVQALANADGEKA-----------------MAVI 268 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 E+ Q++ + +H +M L + + H L+K D+ F FY + Sbjct: 269 QSVAEKGVDWQQLFSDTAETLHQIAMLQLLKHAHQEETPLHFLAKQISPEDVQF--FYQV 326 >gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 79/353 (22%), Positives = 139/353 (39%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+ HALLF G +G+GK T A + Sbjct: 5 VLARRWRPQNFDEVVGQRPVTQTLKNAIAKDRVAHALLFAGPRGVGKTTTARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +A+ D L + + N +DE+R +R Sbjct: 65 ERGRTSEPCSECAS------CNAIATGRSVDCLEIDGASNR---------GIDEVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +VI+ID V + A NALLK+LEEPP V+FIL + + I TI SR Sbjct: 110 IVRYAPSRDKCKVIIIDEVHMLTEPAFNALLKTLEEPPPGVIFILATTHAHKIPPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L + + L+Q+ D + AA GS+ A +L D+ I Sbjct: 170 CQRHDFRRLGQTEILPRLQQIACEEGAAVSDGAMKAIARAAEGSLRDAQSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFL---------IEFILKEI 282 + D + L ++ Q ++ +D A + ++ +E+ Sbjct: 226 AYSGDAVSEEDVAVVLGLVEGELLAQTTQAIIERDSSSALAVVESLSARGDDLQRFCQEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA-FSMYNLDRRQMIFHLLSKAR 334 + +S ++ + Q+ + + A + L + +F +LS+A Sbjct: 286 LAHLRDLMVSKASKDPAPLLQLSRVPLDTIRAQAAALTLADLETVFQVLSRAE 338 >gi|325570730|ref|ZP_08146456.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus casseliflavus ATCC 12755] gi|325156576|gb|EGC68756.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus casseliflavus ATCC 12755] Length = 573 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 131/340 (38%), Gaps = 40/340 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L ++ HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDDVVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + D + + + N V+EIR IR Sbjct: 66 NQVNGEPCNECD------MCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ ++ LE + +I + AA G + A+ I D Sbjct: 171 QRFDFKRINTQDIVGHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQ-----QIADELL--------SQDQKIAFDFLIEFIL 279 +++ E + MQ ++AD L ++ + + L+ + Sbjct: 231 TVTTQDALEVTGSLSYEMMDRLMQACGEKEVADALATLRELLASGKEARRLLENLLVYCR 290 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 + LS E++ Q+ + + +L K +Y+ Sbjct: 291 DLLMYQQAPQLLS---EKSLQLTEAFQTLAKITPPAKIYH 327 >gi|289209016|ref|YP_003461082.1| DNA polymerase III subunits gamma/tau [Thioalkalivibrio sp. K90mix] gi|288944647|gb|ADC72346.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. K90mix] Length = 587 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 72/356 (20%), Positives = 130/356 (36%), Gaps = 43/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPGRFEDLVGQPHVVRALANALSGDRLHHAYLFAGTRGVGKTTIARILARCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A D + + + VD+ R + Sbjct: 65 ETGITATPCGECRS------CVEIAEGRHLDLIEVDAASRT---------RVDDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID V ++ + NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVSYAPTAGRFKVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + + + LE + + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKPMPPALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAYGG 229 Query: 233 DKIISS-YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 D++ S D++ + ++ + D + D L E +L E+ Sbjct: 230 DRLTESDACDMLGL----LPRTRLTGLLDAAFAGDGPGLMQGLQELKGLGPDWSRLLDEL 285 Query: 283 CKSAKAAALSGQL-----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 A+ + E D A+ + L Q++ H Sbjct: 286 AALVHRVAVEQLVRGEGGAEDDDAAERWARETAARIDAETLQLT-YQILIHGARDL 340 >gi|327393012|dbj|BAK10434.1| DNA polymerase III tau subunit DnaX [Pantoea ananatis AJ13355] Length = 656 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 40/349 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LEQ +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALEVDQIRQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + L + D + L + E A L+ Sbjct: 226 AMGEGSVTSAT----------VGTMLGTLDDEQPLGLLEAVV--EGNGEQMMALLAQAAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFY 345 + + +++ +H +M Q++ L+ E N L R+ Sbjct: 274 RGVEWEALLVEMLRLLHRIAMV-----QLLPTSLNDDEESNALRLRELA 317 >gi|317047210|ref|YP_004114858.1| DNA polymerase III subunits gamma and tau [Pantoea sp. At-9b] gi|316948827|gb|ADU68302.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. At-9b] Length = 650 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 137/331 (41%), Gaps = 34/331 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQAFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + + LE + +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRQQLEHILQQEQIAAEPRALQLLARAAEGSMRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-------ELLSQ--DQKIAFDFLIEFILKEI 282 S ++ E L ++ ++D LLSQ + + ++ L+ +L+ + Sbjct: 230 GSVTRESVAQMLGTLDDEQPLALIEALSDGNGEQVMALLSQAASRGVEWEALLVEMLRLL 289 Query: 283 CKSAKAAALSGQLEEAD-QIAQIYFSLVKRV 312 + A L L E + AQ L + + Sbjct: 290 HRIAMVQLLPASLSEDEVSQAQRLRDLARVL 320 >gi|288958658|ref|YP_003448999.1| DNA polymerase III subunit delta' [Azospirillum sp. B510] gi|288910966|dbj|BAI72455.1| DNA polymerase III subunit delta' [Azospirillum sp. B510] Length = 376 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 30/347 (8%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK- 66 P N L GH++ E+ L + + SGR+ HA L G GIGKATL FR+A VL Sbjct: 20 PRRNPDLVGHDEAERLLLEAWNSGRLPHAWLIGGTPGIGKATLAFRFARFVLAQEPPGDS 79 Query: 67 ---------APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 APV + P P +++AS D L + + K G+ + I VD++RR Sbjct: 80 LFGDSLGGAAPVTSLHIGPDHPVFRRVASGGHADLLTIERQRDEKKGRLKRDIAVDDVRR 139 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FL T+ G WRV +ID D MN + NA+LK LEEPP L +L+S +L TI Sbjct: 140 IGPFLRRTSAEGGWRVAVIDGADRMNLSGLNAILKILEEPPPGALLLLVSDNPGGMLPTI 199 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC + L+E + L + + R + + GSV RAI + + Sbjct: 200 RSRCRKLTLKPLAEETVIDLLGRHRPDIAADDRPALARLSEGSVGRAIDLADAGGLALYR 259 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK--------- 287 + L+ +PR + + D+L + F+ E ++ + + A+ Sbjct: 260 EMVGLLSDLPRID--IVAAHAFGDKLTRKQDDGMFETATELLVWWLARFARSLARGSWPA 317 Query: 288 -----AAALSGQLEEA---DQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 AAL +L A ++ +++ + + NLDR+Q++ Sbjct: 318 EVVPGEAALMTRLANARGLERWVEVWEKVQRLFARAESANLDRKQVV 364 >gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15] gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15] Length = 581 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------KMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + AL+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALE--ALNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|92117539|ref|YP_577268.1| DNA polymerase III subunit delta' [Nitrobacter hamburgensis X14] gi|91800433|gb|ABE62808.1| DNA polymerase III, delta prime subunit [Nitrobacter hamburgensis X14] Length = 346 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 169/350 (48%), Gaps = 16/350 (4%) Query: 1 MIDR-------AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFR 53 MI R P LFGH + E+ L Y GR+ HA L G GIGKATL +R Sbjct: 1 MIARPTAAEKSVLHPRETTALFGHGEAERTLLDAYRGGRIPHAWLIGGAPGIGKATLAYR 60 Query: 54 YAGHVLQNPDFSKAPVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI 110 A VL + D + +PV+ DP P + +A+ L L + N K G RTVI Sbjct: 61 MARFVLAHGDPAMSPVQSAETLELDPMHPVARHVAADTHGGLLTLERTPNEK-GVMRTVI 119 Query: 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 +V++ R F TA G WRV ++D VD +N NAANALLK LEEPP LF+L+SHA Sbjct: 120 SVEQTRETIAFFGSTAAVGGWRVCIVDTVDELNPNAANALLKVLEEPPHLSLFLLVSHAP 179 Query: 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSK-RDFVKIAAYGSVARAIKILH 229 IL TI+SRC + L+ ++ +A + + D AA GSVARA+ ++ Sbjct: 180 ARILPTIQSRCRKLALRPLAAGDVIRAAAEAARIAPDDASLREAADAAEGSVARALALVG 239 Query: 230 YDCDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 K+ L+ +P+ + +++ + D L D+ A ++ + + I + + Sbjct: 240 GGALKLHQRTAALLDSLPQVDP--RELHALGDALGGSDRA-ALGAFVDSVDRWIAERLRT 296 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + L ++A+++ + YNL+R+ ++F + E Sbjct: 297 GDANANLPRLARLAEVWEKINNAARETETYNLERKPLVFSVFGLLAEATR 346 >gi|193077651|gb|ABO12483.2| DNA polymerase III tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii ATCC 17978] Length = 702 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 143/352 (40%), Gaps = 30/352 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVCTT------CKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADPDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H +++M + D + D IA + ++ + AL L Sbjct: 225 AYGQGAVHHQD----VKEMLGLIDRTIIYDLIIAVHQNQREKVSQLLLQFRYQALDVSLV 280 Query: 297 EADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 I+ ++ +L++ + + + LSK DL + +Y I Sbjct: 281 LDQLISTLHELALLQYLPELGLKYSEEINTKILQLSKLISAQDL--QLYYQI 330 >gi|254428260|ref|ZP_05041967.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax sp. DG881] gi|196194429|gb|EDX89388.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax sp. DG881] Length = 635 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 137/329 (41%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSRCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C P +++ D + + + K V++ R + Sbjct: 65 EQGVSARPCGVC------PTCQEITDGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + L++ I + + AA GS+ A+ + + + Sbjct: 170 CLQFSLKALPAEQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSLTDQAIAFGS 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQDQKIAFDF---------LIEFILKEI 282 +++ S ++ ++ + + L + +A++ + L++ ++ ++ Sbjct: 230 EQLSSEAVNAMLGTVDRNHVLTLLVALAEQEPGGVLQALATVSEHCPGELALLDELISQL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + A A+ G +E Q Q+ +L Sbjct: 290 HQLAVCQAVPGSYDETQQ--QLAAALTAE 316 >gi|158520559|ref|YP_001528429.1| DNA polymerase III, subunits gamma and tau [Desulfococcus oleovorans Hxd3] gi|158509385|gb|ABW66352.1| DNA polymerase III, subunits gamma and tau [Desulfococcus oleovorans Hxd3] Length = 570 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + + + L+ SGR+ HA+LF G +G GK T+ A + Sbjct: 5 VLARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHAILFTGPRGTGKTTIARILAKAMNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++AS D + + N +VD++R +R Sbjct: 65 EKGPTPTPCCACRS------CLEIASGNATDVFEIDGASNN---------SVDQVRELRG 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ A NALLK+LEEPP V+F + I TI SR Sbjct: 110 NVKFMPAHSPYKIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + + L L E+ I + + A GSV ++ +L D+++ Sbjct: 170 CQRHDLSFVGIDPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLL----DQVM 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFL---------IEFILKEI 282 SS + AL + + ++ +L+ D A D L I+ E+ Sbjct: 226 SSAQGPVSHEMVLEALGIIDREVIFGLSGAVLAGDMTGALDILDTVYRGGHDIKRFYAEM 285 Query: 283 CKSAKAAALSGQLEEADQIAQI 304 + + A+++A + Sbjct: 286 LGHFRDLLMVKLGVRAERLASL 307 >gi|90416006|ref|ZP_01223939.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2207] gi|90332380|gb|EAS47577.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2207] Length = 647 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 72/357 (20%), Positives = 140/357 (39%), Gaps = 41/357 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+HHA LF G +G+GK T+ + + Sbjct: 5 VLARKWRPRIFAEMAGQQHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILSKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ ++ D + + + VD++R + Sbjct: 65 EVGVSSVPCGECSS------CTEIGEGRFIDLIEVDAASRT---------GVDDMRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G +++ +ID V +++++ ALLK+LEEPP V F+ + + T+ SR Sbjct: 110 NVQYAPSRGRYKIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +LS + + L+ + ++ ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKNLSAERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 ++ L +++ I L+S + AAL Sbjct: 226 GHGGGQVNEGEVSAMLGTIERSYVVDICQALISGSGTELLAAIGRMAE---QAPDYDAAL 282 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH-LLSKARECNDLYFRDFYAI 347 + L Q+A +V+ V LD+ + LL+ A + + FY I Sbjct: 283 TDILSVWHQVA-----IVQTVPEA----LDKGVANYTELLALAAAVSREDTQLFYQI 330 >gi|302336481|ref|YP_003801688.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084] gi|301320321|gb|ADK68808.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084] Length = 732 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + G + + L GR HA LF G +G GK T+ A ++ Sbjct: 4 LYTKYRPQTFADVVGQQHVVSTLEHAVLEGRTSHAYLFCGPRGTGKTTMARLLAKALMCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 P C + +AS D L + VD +R I Sbjct: 64 RGAGHLPDGSCEQ------CRLIASGDHPDVYELDAASRT---------GVDNVREEIIS 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S G ++V +ID V + A NALLK+LEEPP+ LF+L + I TI SR Sbjct: 109 RVSYAPVRGGYKVYIIDEVHMLTTAAFNALLKTLEEPPEHTLFVLCTTDPQKIPETILSR 168 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 F+++ +++ L ++ + + V A G + A+ L Sbjct: 169 VQRFDFHAIGNDDIKAHLTRVCDEEGFSYDVAAIELVVRHARGGMRDALSTLEQLSVFGS 228 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL--KEICKSAKAA 289 KI + + DL+ E + ++ +A + ++ F + + + +++ + ++ Sbjct: 229 GKISVEAARDLLG----EVSGSQLASVACAMAERNVPSLFGTVADLVDAGRDLLQFSREL 284 Query: 290 A 290 A Sbjct: 285 A 285 >gi|88857873|ref|ZP_01132515.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas tunicata D2] gi|88819490|gb|EAR29303.1| putative DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas tunicata D2] Length = 820 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 148/356 (41%), Gaps = 39/356 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E +++ L R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQNFHQLVGQEHVKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ + + D L + + K V++ R I Sbjct: 65 ELGITATPCGQCSA------CLDIEAGRYIDLLEIDAASRTK---------VEDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V +++++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++LS + + L + +I + + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLSALSRPQIEQQLSFVLTEEQIHFEVASLALLAKAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + ++ + + L M +++ ++ +D + + + K A Sbjct: 226 AQTNGQVNESQVKSMLGLMDASWAKRLLVSIVDKDGAELLSLVADLV--------KQNAN 277 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 + + + L + V + + +N D I +SK+ + + +Y + Sbjct: 278 AKSVLDDLLSLTHLLLLTQLVPSAAAFNEDEADFI-DAMSKSLSPEQV--QVYYQL 330 >gi|294859646|ref|ZP_06797415.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6013150] Length = 682 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|215483116|ref|YP_002325323.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii AB307-0294] gi|213988763|gb|ACJ59062.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii AB307-0294] Length = 700 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|213158428|ref|YP_002319726.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057] gi|213057588|gb|ACJ42490.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057] Length = 686 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|169795628|ref|YP_001713421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii AYE] gi|169148555|emb|CAM86421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter baumannii AYE] Length = 710 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|260554689|ref|ZP_05826910.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] gi|260411231|gb|EEX04528.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606] Length = 702 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|227328730|ref|ZP_03832754.1| DNA polymerase III subunits gamma and tau [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 687 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 128/333 (38%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFAHVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 EQGVTATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + LEQ ++ + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 +S ++ E L ++ +A +Q DQ A E +L E Sbjct: 230 GQVTTASVSQMLGTLDDEQPLALIEALAKGDGAQVMSLLDQVAARGVDWESLLVETQTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D A + + A Sbjct: 290 HRIAMVQLLPAALGDDYAAVEARMRDLARALPP 322 >gi|253565020|ref|ZP_04842476.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5] gi|251946485|gb|EES86862.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5] Length = 614 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MNLTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENKVSDALLLFNDVLNK 276 >gi|88705062|ref|ZP_01102774.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis KT71] gi|88700757|gb|EAQ97864.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis KT71] Length = 555 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 45/337 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPATFDALVGQEHVLQALRHALDSNRLHHAYLFTGTRGVGKTTIARILARSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S AP C+ +++ D + + + K V++ R + Sbjct: 65 EKGVSAAPCGECSS------CVEISEGRSVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + +T+ SR Sbjct: 110 NVQYAPTRSRFKVYLIDEVHMLSGHSFNALLKTLEEPPEHVKFLLATTDPQKLPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++S + + L Q ++ D+ + AA GS+ A+ + D+ I Sbjct: 170 CLQFNLKNMSAQRVVEHLRDVLTQEQVAFDDAALWQLGRAAAGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ------------------IADELLSQDQKIAFDFLIEFI 278 + + L + + IA +Q + F ++ + Sbjct: 226 AFGDGSLRDAEVASMLGTVDRRHVYDLLDALLADDAPALIAACAQMDEQGVDFTSAVDEL 285 Query: 279 LKEICKSAKAAALSGQLE----EADQIAQIYFSLVKR 311 + + A A A+ G ++ +A+++A + + Sbjct: 286 TSVLHRCALAQAVPGAIDPEFGDAERVADLGQRMTAE 322 >gi|269138376|ref|YP_003295076.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda EIB202] gi|267984036|gb|ACY83865.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda EIB202] gi|304558406|gb|ADM41070.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda FL6-60] Length = 689 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 142/353 (40%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 42 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 101 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D L + + K V++ R + Sbjct: 102 ETGITATPCGVCDN------CREIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 146 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 147 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 206 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + LE++ + + AA GS+ A+ + + Sbjct: 207 CLQFHLRALDHEQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAMGQ 266 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEI 282 +I + + ++ E L ++ + + + + ++ L+ +L + Sbjct: 267 GQITADAVSQMLGTLDDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENLLVEMLALL 326 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ Q A + L + +L Q+ + +L R+ Sbjct: 327 HRVAMLQLLPSALD--SQFAAVEPRLRELARMLPPADL---QLFYQILLNGRK 374 >gi|167855677|ref|ZP_02478434.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis 29755] gi|167853195|gb|EDS24452.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis 29755] Length = 672 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L GR+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C K + D + + + K V++ R + Sbjct: 65 ETGISADPCGQCAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ +L ++ + + LE Q +I S + AA GS+ A+ + D+ I Sbjct: 170 CMQFHLRALEQSQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I +P L + ++ L + D + A A + Sbjct: 226 AVSNVNITLPIVSQMLGLIDDHQPLELVQALANADGEKA-----------------MAVI 268 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQ----MIFHLLSKARECNDLYFRDFYAI 347 E+ Q+ + +H +M L + H L+K D+ F FY + Sbjct: 269 QSVAEKGVDWQQLLSDTAETLHQIAMLQLLKHPHQEETPLHFLAKQISPEDVQF--FYQV 326 >gi|271499625|ref|YP_003332650.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech586] gi|270343180|gb|ACZ75945.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii Ech586] Length = 675 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 31/333 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGVTATPCGQCDT------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + LEQ ++ + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDAEQIRQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQI-----ADELLSQDQKIAFDFLIEFILKEICKSA 286 ++ ++ + +++ E L ++ + A + +Q E +L E Sbjct: 230 GQVTAAAVSEMLGTLDDEQPLGLIEALVKGDGAGVMALMEQSAVRGTDWEALLVETLTLL 289 Query: 287 KAAALSGQLEEA--DQIAQIYFSLVKRVHAFSM 317 A+ L A D+ Q+ L + Sbjct: 290 HRIAMLQLLPSALGDEYHQVAPRLRELARVVPP 322 >gi|257869778|ref|ZP_05649431.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803942|gb|EEV32764.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 579 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + I + L ++ HA LF G +G GK + +A + Sbjct: 13 LYRVWRSQRFEDVVGQKAITQTLKNAIEQNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 72 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + D + + + N V+EIR IR Sbjct: 73 NQVNGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 117 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 118 ANYAPTQAEYKVYIVDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRT 177 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ L+ + +I + + AA G + A+ I D+ I+ Sbjct: 178 QRFDFKRINTQDIVDHLKTVLDGSQIAYEEEALQVIARAAEGGMRDALSI----ADQAIA 233 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + Q ++ L + F + + + ++ + SG+ Sbjct: 234 F-------SDGKVTTQDALEVTGSLSYEMMDRLMQFCEDQAVPDALETLRQLLSSGKEAR 286 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 ++ +L+ +Y Sbjct: 287 -----RLLENLLVYCRDLLLYQ 303 >gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium hafniense DCB-2] gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium hafniense DCB-2] Length = 554 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 29/328 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + K L+ ++ HA LF G +G GK T A + Sbjct: 6 LYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C F + + + + + N +DEIR +R Sbjct: 66 HREGVEPCNQC------AFCLSIDQGSAMEVFEIDAASNR---------GIDEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+A ++V +ID V + A NALLK+LEEPP++V+FIL + I TI SR Sbjct: 111 VRLSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRV 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F+ + ++ L++ + + + G + A+ IL D Sbjct: 171 QRFEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGK 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + ++ + +E++ Q+ D LL+ D A L E I + + L Sbjct: 231 LGVEQVYQVLGMVGEEFSA----QLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLD 286 Query: 294 QLEEADQIA--QIYFSLVKRVHAFSMYN 319 + +A A Q + + + Y Sbjct: 287 YMRQALLYASTQAFPQVAPHLREHLAYQ 314 >gi|306831039|ref|ZP_07464201.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427062|gb|EFM30172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 559 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + +I + + A G + A+ IL Sbjct: 170 QRFEFKAIKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y+ L IA+E+ A D + +L A A L + Sbjct: 230 NYVSL--------------AIAEEITGSISMTALDDFVANVLANQTSQA-LANLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|157146903|ref|YP_001454222.1| DNA polymerase III subunits gamma and tau [Citrobacter koseri ATCC BAA-895] gi|157084108|gb|ABV13786.1| hypothetical protein CKO_02679 [Citrobacter koseri ATCC BAA-895] Length = 641 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 128/325 (39%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +S + L + + + +++ + + + + + I A + Sbjct: 226 ASGDGQVSTLAVSAMLGTLDDDQALSLVEAVVAANGERVMSLVNDAAARGIEWEALLVEM 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFS 316 G L + +L + A Sbjct: 286 LGLLHRIAMVQLSPAALGNDMAAIE 310 >gi|313681672|ref|YP_004059410.1| DNA polymerase iii, tau subunit [Sulfuricurvum kujiense DSM 16994] gi|313154532|gb|ADR33210.1| DNA polymerase III, tau subunit [Sulfuricurvum kujiense DSM 16994] Length = 549 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 35/359 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E I + LS S R+ HA LF G +G GK + +A ++ Sbjct: 6 VLALKYRPRRFEELIGQESISQTLSLALDSKRLSHAYLFSGLRGSGKTSTARIFAKSLIC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP +C D + + + + K +D+IR + Sbjct: 66 ENGPTSAPCDVC------SHCVMANEGRHIDIIEMDAASSRK---------IDDIRDLIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ +ID V + + A NALLK+LEEPP+ V FIL + + TI SR Sbjct: 111 HTKYRPASANVKIFIIDEVHMLTKEAHNALLKTLEEPPEYVKFILATTDPLKLPPTILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 +F +S N+ L + I D + + GS+ + +L Sbjct: 171 TQHFRFKRISHPNIVHHLSHILHLENIEYQAEALDILARSGSGSLRDTLTLLDQAIIYSK 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-------ILKEICK 284 + + D++ + +Y + ++ D + ++D+ L E ++ E+ Sbjct: 231 GFVDVKTVADMLGLLDPDY----ISRLFDAIFAKDRSSLISMLQELEAYESEMVIDELIA 286 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 K G + + + +F ++ N D ++ +L K E + D Sbjct: 287 YLKERLYEGDHRFSPLVIERFFRILSDAKTLFAINADGGFVVSLVLFKMIEALKIKEID 345 >gi|269123513|ref|YP_003306090.1| DNA polymerase III, subunits gamma and tau [Streptobacillus moniliformis DSM 12112] gi|268314839|gb|ACZ01213.1| DNA polymerase III, subunits gamma and tau [Streptobacillus moniliformis DSM 12112] Length = 455 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 41/350 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L+G E I + + + ++ HA LF G +G+GK T+ A N Sbjct: 6 LYRKYRPQNFSELYGQEHIVRAIKNSLDNDKLSHAYLFNGPRGVGKTTIARLIAKGANCN 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D + + + N +DEIR ++ Sbjct: 66 SGITSNPCDDCEN------CKEITKGISVDIIEIDAASNR---------GIDEIRDLKES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +V +ID V + + A NALLK LEEPP+ ++FIL + I T+ SRC Sbjct: 111 TGYLPVKCRKKVYIIDEVHMLTKEAFNALLKILEEPPKHIIFILATTEIEKIPDTVISRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++SE ++ L++ I + + + GS + I + Sbjct: 171 QRYDFKTISETDIINMLKKVAKNENINIDTESLELIYSKSEGSARDSFSIFEQVTSNYYN 230 Query: 238 SYIDLIHIPRQEYALQKMQQIA-------------DELLSQDQKIAFDFL-IEFILKEIC 283 D I I + E AL + +I DEL+S K+ + + I+ L++ C Sbjct: 231 E--DEITIDKTEKALGVVSKIFYNNFTNLIIENKKDELISFIDKLWIEGIQIDQFLRDFC 288 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K + L + I+ + LVK + D+R + + +++K Sbjct: 289 KYIKHQDIDLDL-KTHIISNVLEILVKYKNEE-----DKRLLAYIIINKI 332 >gi|312171607|emb|CBX79865.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora ATCC BAA-2158] Length = 643 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTEVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + + L+ I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDQEQIRGQLQHVLHAETISAESRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ D++ + E L ++ + +Q + + ++ L+ +L + Sbjct: 230 GQVTTATVNDMLGMLDDEQPLALIEALVHADGAQVMALVNQAATRGVEWEALLVEMLTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L ++ +A + L + Sbjct: 290 HRVAMIQLLPSAL--SEDMAAVAQRLRELARVLPP 322 >gi|295105372|emb|CBL02916.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium prausnitzii SL3/3] Length = 628 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 19/263 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L +GR+ HA LF G +G GK T +A V Sbjct: 5 LYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + +L D + + + N VD+IR +R Sbjct: 65 HPVNGDPCGEC------EICKGIDNGSLLDVVEMDAASNN---------GVDDIRDLRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 110 TAYTPSACQYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + +E + K+ + + A G++ A+ IL Sbjct: 170 QRYDFTRIGPEDIARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAK 229 Query: 238 SYIDLIHIPRQEYALQKMQQIAD 260 D++ + I+D Sbjct: 230 IDADVVRRMAGVTDRSYLFHISD 252 >gi|56807590|ref|ZP_00365500.1| COG2812: DNA polymerase III, gamma/tau subunits [Streptococcus pyogenes M49 591] Length = 334 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISILALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|323518491|gb|ADX92872.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii TCDC-AB0715] Length = 692 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|322507665|gb|ADX03119.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii 1656-2] Length = 710 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|184158568|ref|YP_001846907.1| DNA polymerase III subunit gamma/tau [Acinetobacter baumannii ACICU] gi|294841838|ref|ZP_06786521.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6014059] gi|183210162|gb|ACC57560.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii ACICU] Length = 680 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|46581600|ref|YP_012408.1| DNA polymerase III subunits gamma and tau [Desulfovibrio vulgaris str. Hildenborough] gi|46451023|gb|AAS97668.1| DNA polymerase III, gamma and tau subunits, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311235243|gb|ADP88097.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris RCH1] Length = 616 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 41/325 (12%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E ++ LS+ R+ A LF G +G+GK T+ +A + Sbjct: 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCTTAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C +++ D + + + N +D+ +R++ + Sbjct: 69 TGEPCNTCEQ------CRKVTQGMHVDVVEIDGASNR---------GIDDAKRLKEAIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G ++V +ID + R A NALLK+LEEPP +V F+L + TI SRC Sbjct: 114 APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 Query: 185 KFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F LS E +L K L + + + + A GSV ++ +L + Sbjct: 174 TFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIAD-----------ELLSQDQKIAFDFLIEFILKE--- 281 I ++ + QE L+ M+ +A ELL + + F FL E + Sbjct: 234 IDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGF-FLRELVATWRNL 292 Query: 282 -ICKSAKAAALSGQLEEADQIAQIY 305 + + A AAL+ L+ + A+ + Sbjct: 293 FMLRQAGEAALA-SLDLPEDEARQW 316 >gi|255010713|ref|ZP_05282839.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] gi|313148519|ref|ZP_07810712.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] gi|313137286|gb|EFR54646.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12] Length = 614 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MNLTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVDDTVNHLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENKVSDALLLFNDVLNK 276 >gi|294054461|ref|YP_003548119.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] gi|293613794|gb|ADE53949.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] Length = 376 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P L G + I + L + R+ HA LF G +G GK + +A + Sbjct: 7 VIARRWRPKQFDELVGQDHIVQTLRNAIETNRIAHAYLFVGPRGTGKTSSARLFAKCLNA 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP D S + + S + D + + + N +VD++R +R Sbjct: 67 EGGPNIAP------DNDSEISQSIMSGSCMDVIEIDGASNN---------SVDQVRDLRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V + A NALLK+LEEPP V FI + + +L TI SR Sbjct: 112 DCQYAPTQCSFKIYIIDEVHMLTTAAFNALLKTLEEPPPHVKFIFATTEAHKVLPTIVSR 171 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F +++ + L E I D+ + + A G + + IL D++I Sbjct: 172 CQRFEFRPIADEVIVAKLKTISEAEGIQVEDAALESIARLANGGMRDSQSIL----DQMI 227 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 S + I+ + +++ +A L S D + + F Sbjct: 228 SFCGNEINEGDVLDVYGLVSAERIAGLAKALGSLDYPAILEMVDRF 273 >gi|187477417|ref|YP_785441.1| DNA polymerase III subunits gamma and tau [Bordetella avium 197N] gi|115422003|emb|CAJ48525.1| DNA polymerase III subunit Tau [Bordetella avium 197N] Length = 646 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 37/334 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C ++ + D+L L + N V+E+ ++ Sbjct: 65 ETGITSKPCGVCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 110 QAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + ++ L+ Q +I + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKQMPPESIVGHLQAVLGQEQIGFEVPALRLIGQAASGSMRDALSLTDQAIAYSA 229 Query: 233 DKIISSY-------IDLIHIPRQEYAL-----QKMQQIADELLSQD--QKIAFDFLIEFI 278 + ID H+ R AL + + +ADEL ++ A + Sbjct: 230 GNLTEEAVRGMLGTIDQRHLVRLLDALTAGDARSVLAVADELSTRGLSYTGALADFAVLL 289 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 + + A A G A IA++ +L Sbjct: 290 SRVAIEQRVAGATPGDDPLAQDIARLAANLHPDA 323 >gi|53714518|ref|YP_100510.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46] gi|52217383|dbj|BAD49976.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46] Length = 614 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MNLTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENKVSDALLLFNDVLNK 276 >gi|119505876|ref|ZP_01627941.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2080] gi|119458304|gb|EAW39414.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2080] Length = 568 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 64/343 (18%), Positives = 139/343 (40%), Gaps = 33/343 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFHEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++A D + + + K V++ R + Sbjct: 65 EVGVGSEPCGECGS------CREIAEGRSVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ ++ NALLK+LEEPP F+L + + +TI SR Sbjct: 110 NVQYAPSRARFKIYLIDEVHMLSNHSFNALLKTLEEPPPHAKFLLATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ + + LE + + + AA GS+ A+ + + Y Sbjct: 170 CLQFNLKNMLPEQVVEHLEKILAEEAVEFESPALTLLGRAAAGSMRDALSLTDQAIAYGS 229 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI------LKEICKS 285 ++ + D++ + L+ M ++A+ ++ D + E L+E+ Sbjct: 230 GQLQEADVRDMLGTVDRGRVLELMTRVAEGDAAK-ILACVDSIAEHAPDYASTLEEVISL 288 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 L+ + + + + ++ + + +LD Q+ + Sbjct: 289 LHQLTLAQMVPGSLTGDTLEENKIREL--AATLSLDETQLFYQ 329 >gi|224368757|ref|YP_002602918.1| DnaX [Desulfobacterium autotrophicum HRM2] gi|223691473|gb|ACN14756.1| DnaX [Desulfobacterium autotrophicum HRM2] Length = 590 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 121/322 (37%), Gaps = 26/322 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + G + L SGR+ HA+L G +G GK T+ A + Sbjct: 5 VLALKYRPQTFDEVVGQPHVTTTLKNAILSGRVPHAILLTGPRGTGKTTIARILAKAMNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + + D + + N +VD++R +R Sbjct: 65 ETGPTPTPCNICKT------CTNITAGSAVDVFEIDGASNN---------SVDQVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++ +++ +ID V ++ A NALLK+LEEPP V+FI + I TI SR Sbjct: 110 NVAYMPSSSKFKIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +S + L L D + A GS+ ++ +L D+I+ Sbjct: 170 CQRHDLGRISLAQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLL----DRIL 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S A+ +I L D+ + FD I L Sbjct: 226 GSQAQTSEQTSGPRAIDD-DKILGTLGIIDKTLVFDLADAIIQNRGADIIDLVDRIHTLG 284 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 + + Y SL++ ++ Sbjct: 285 L--DLKRFYASLIRHFRNLAVV 304 >gi|310766874|gb|ADP11824.1| DNA polymerase III subunit tau [Erwinia sp. Ejp617] Length = 640 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 136/335 (40%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + L I + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDQEQIRGQLAHVLHAENIGAETRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ + D++ + E L ++ + +Q + + ++ L+ +L + Sbjct: 230 GQVTAATVNDMLGMLDDEQPLALIEALVHADGAQVMALLNQAATRGVEWEALLVEMLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L +D +A + L + Sbjct: 290 HRVAMIQLLPSAL--SDDMAAVAQRLRELARVLPP 322 >gi|296101605|ref|YP_003611751.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056064|gb|ADF60802.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 637 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 1 MLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 60 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 61 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRELLD 105 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 106 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 165 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I+ + AA GS+ A+ + D+ I Sbjct: 166 CLQFHLKALDVEQIRTQLEHILDEENIVHEPRALQLLARAADGSLRDALSL----TDQAI 221 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + + ++ L + D A + I + + ++ Sbjct: 222 ASGDGKLST----------EAVSTMLGTLDDDQALSLIEATIAANGER--VMSLVNAAAA 269 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + + ++ +H +M L M Sbjct: 270 RGVEWEALLVEMLSLLHRVAMLQLSPSAM 298 >gi|60682540|ref|YP_212684.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343] gi|60493974|emb|CAH08766.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343] Length = 614 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + C F +Q + + L + N +VD+IR++ Sbjct: 66 MNLTADGEACNEC--ESCVAFNEQRSYNIH----ELDAASNN---------SVDDIRQLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ +A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN +S ++ L + I + + + A G + A+ I Sbjct: 171 RCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + S I+ +++ EY ++ D L A + + K Sbjct: 231 GGNITYKSVIENLNVLDYEYYF----RLTDCFLENKVSDALLLFNDVLNK 276 >gi|292487502|ref|YP_003530374.1| DNA polymerase III subunits tau/gamma [Erwinia amylovora CFBP1430] gi|292898743|ref|YP_003538112.1| DNA polymerase III subunit tau/gamma [Erwinia amylovora ATCC 49946] gi|291198591|emb|CBJ45699.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Erwinia amylovora ATCC 49946] gi|291552921|emb|CBA19966.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora CFBP1430] Length = 643 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTEVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL +L + + L+ I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDQEQIRGQLQHVLHAETISAESRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ D++ + E L ++ + +Q + + ++ L+ +L + Sbjct: 230 GQVTTATVNDMLGMLDDEQPLALIEALVHADGAQVMALVNQAATRGVEWEALLVEMLTLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L ++ +A + L + Sbjct: 290 HRVAMIQLLPSAL--SEDMAAVAQRLRELARVLPP 322 >gi|254496164|ref|ZP_05109061.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii LLAP12] gi|254354620|gb|EET13258.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii LLAP12] Length = 554 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 33/296 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSIARILAKSLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P CN + D + + + V++ R + Sbjct: 66 HGISSEPCLQCNA------CMAIEQGRFIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRC Sbjct: 111 VQYAPASGRFKIYLIDEVHMLSQHSFNALLKTLEEPPAHVKFILATTDPQKLPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 L L+ + + + L+ ++ + D + AA GS+ A+ +L Sbjct: 171 LQFNLKHLAADVISQHLQLILNDEQLDFEVAALDILAQAARGSMRDALSLLDQAITSCDI 230 Query: 234 KIISSYIDL-IHIPRQEYALQKMQQIAD----ELLSQDQKIA-----FDFLIEFIL 279 K+ +S + L + +Q+YA+Q +Q +A ELL+ Q+IA F ++++ +L Sbjct: 231 KLHASDVKLILGYTQQDYAIQLLQALAAQNAPELLTISQQIAIEGGHFQYVLDELL 286 >gi|254512025|ref|ZP_05124092.1| DNA polymerase III subunit delta [Rhodobacteraceae bacterium KLH11] gi|221535736|gb|EEE38724.1| DNA polymerase III subunit delta [Rhodobacteraceae bacterium KLH11] Length = 373 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 103/361 (28%), Positives = 162/361 (44%), Gaps = 31/361 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 A P RLFG E+ Y S R+HH L G +G+GKATL +R A +L P Sbjct: 13 GALHPRETVRLFGQGAAEQAFLNAYTSDRLHHGWLLSGPRGVGKATLAWRIARFLLATPA 72 Query: 64 FSK-------APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P DP P ++ + A ++ S+N G+ R I VD+IR Sbjct: 73 VEEDGLFGAPPPPDTLEIDPDHPVAHRILAGAEPGLAAITRSVN-DQGRLRNEIVVDDIR 131 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ F L++ G RV+++D D MN +AANALLK LEEPP +LISH +L T Sbjct: 132 KLGRFFGLSSADGGRRVVIVDAADEMNVSAANALLKMLEEPPAHTTLLLISHQPSRLLPT 191 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 IRSRC +++ + L ++ AL Q +AA GSV A+++++ ++ Sbjct: 192 IRSRCRTLRLSPLGAEDMQAALAQTGADLTGQPGHLAALAA-GSVGDAVRLINLGGLELY 250 Query: 237 SSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA----- 290 + I ++ +PR + Q+ ++A+ + FD L+ I + + A A Sbjct: 251 AELIGILGTLPRLDR--QRALKLAETAAQRGAAERFDLLLSLIDIALARLALTGATGAAP 308 Query: 291 --------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 LSG +A Q A+ + R NLD ++ + K +E Sbjct: 309 QPEAAPNEAETLARLSGSPHQARQWAEAAALITSRARHGQAVNLDPASLVLDTVFKIQET 368 Query: 337 N 337 Sbjct: 369 A 369 >gi|219850060|ref|YP_002464493.1| DNA polymerase III subunits gamma and tau [Chloroflexus aggregans DSM 9485] gi|219544319|gb|ACL26057.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aggregans DSM 9485] Length = 613 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 36/323 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + L G E + + L R+ HA LF G +G+GK T+ A V Sbjct: 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCL 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD S P C +A D + + + + +V++ R I Sbjct: 66 HPDPSARPCGTC------EMCTAIAEGRAVDVIEMDAASHT---------SVEDAREIIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +V +ID ++ A NALLK+LEEPP LFIL + + +TI SR Sbjct: 111 RVQFRPSVARMKVYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F S ++ + ++ I+ + + + AA GS+ A+ IL Sbjct: 171 CQRFTFVRHSVTSMAAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILE------- 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 L LQ +Q LL D LIE +L +A A++ Sbjct: 224 ----QLASFVEGPITLQHVQ----SLLGMTAAAEVDALIEALLSADLTAALR-AVNAVAN 274 Query: 297 EADQIAQIYFSLVKRVHAFSMYN 319 + + Q +V+R+ A + N Sbjct: 275 QGADLRQFARDVVERLRAVMLLN 297 >gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] Length = 581 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + S D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITSGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + L+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALET--LNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|257463125|ref|ZP_05627526.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D12] gi|317060721|ref|ZP_07925206.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12] gi|313686397|gb|EFS23232.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12] Length = 468 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 39/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + C+ F + D + + + N +DEIR ++ Sbjct: 65 EPKEDGEACGVC--ENCTSF----QEGSFLDLVEIDAASNR---------GIDEIRLLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEPDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS ++ L+ + + + ++ + A+ GS+ AI +L I+ Sbjct: 170 CQRYDFKTLSLQDMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLER---LIV 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 SS I + E L QKM+Q LL +++K L +E LK+ Sbjct: 227 SSSERKISLEESEKILGMTPIQKMEQFLHCLLQEEKKTILRELDELWFQSVDMEAFLKDF 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 K K +LE + I ++ + ++ F + D+R + + L+ K ++ Sbjct: 287 AKFIKNQIKKEKLEVEKGLF-IIKNIYEVLNIFRL-EEDKRLVAYVLVEKLQK 337 >gi|258541156|ref|YP_003186589.1| DNA polymerase III subunits gamma/tau [Acetobacter pasteurianus IFO 3283-01] gi|256632234|dbj|BAH98209.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-01] gi|256635291|dbj|BAI01260.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-03] gi|256638346|dbj|BAI04308.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-07] gi|256641400|dbj|BAI07355.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-22] gi|256644455|dbj|BAI10403.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-26] gi|256647510|dbj|BAI13451.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-32] gi|256650563|dbj|BAI16497.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653554|dbj|BAI19481.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO 3283-12] Length = 657 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 113/282 (40%), Gaps = 28/282 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+ HA + G +G+GK T A + Sbjct: 52 VLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALNC 111 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + + D L + + VD++R Sbjct: 112 IGPDGNGGPT----ADPCGVCANCVAILNDRHPDVLEMDAASRT---------GVDDVRE 158 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ Sbjct: 159 IIEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTV 218 Query: 178 RSRCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + ++ L + E+ + V AA GSV + +L D Sbjct: 219 LSRCQRFDLRRVPQSELVGLFSRIAEKEHVRLSSDALALVARAADGSVRDGLSLL----D 274 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + I+ + I+D L D+++ FD L Sbjct: 275 QAIAQGTG----QTDADGVIGATVISDMLGLADREVVFDLLE 312 >gi|257867899|ref|ZP_05647552.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874228|ref|ZP_05653881.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257876792|ref|ZP_05656445.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257801982|gb|EEV30885.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808392|gb|EEV37214.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257810958|gb|EEV39778.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 577 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 131/340 (38%), Gaps = 40/340 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L ++ HA LF G +G GK + +A + Sbjct: 10 LYRVWRSQRFDDVVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + D + + + N V+EIR IR Sbjct: 70 NQVNGEPCNECD------MCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 115 ANYAPTQAEYKVYIIDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRT 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ ++ LE + +I + AA G + A+ I D Sbjct: 175 QRFDFKRINTQDIVGHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDG 234 Query: 233 DKIISSYIDLIHIPRQEYALQKMQ-----QIADELL--------SQDQKIAFDFLIEFIL 279 +++ E + MQ ++AD L ++ + + L+ + Sbjct: 235 TVTTQDALEVTGSLSYEMMDRLMQACGEKEVADALATLRELLASGKEARRLLENLLVYCR 294 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYN 319 + LS E++ Q+ + + +L K +Y+ Sbjct: 295 DLLMYQQAPQLLS---EKSLQLTEAFQTLAKNTPPAKIYH 331 >gi|259909222|ref|YP_002649578.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96] gi|224964844|emb|CAX56366.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96] gi|283479272|emb|CAY75188.1| DNA polymerase III, tau and gamma subunits [Erwinia pyrifoliae DSM 12163] Length = 643 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 136/335 (40%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQAFTDVVGQQHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + L I + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDQEQIRGQLAHVLHAENIGAETRALQLLARAADGSMRDALSLTDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ + D++ + E L ++ + +Q + + ++ L+ +L + Sbjct: 230 GQVTAATVNDMLGMLDDEQPLALIEALVHADGAQVMALLNQAATRGVEWEALLVEMLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L +D +A + L + Sbjct: 290 HRVAMIQLLPSAL--SDDMAAVAQRLRELARVLPP 322 >gi|297625597|ref|YP_003687360.1| hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921362|emb|CBL55915.1| Hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1134 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 123/353 (34%), Gaps = 46/353 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +++ G + + L + + R+ HA LF G +G GK T A + Sbjct: 92 LYRRYRPDTFEQVIGQDHVTLPLQRAIANNRVSHAYLFSGPRGCGKTTCARILARCLNCE 151 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C +++A+ D + + + + VD+ R +R Sbjct: 152 NGPTPTPCGHCTS------CRELATGGPGSIDVIEIDAASHG---------RVDDARELR 196 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID + + NALLK +EEPP V FI + ++ TIRS Sbjct: 197 EGIFFAPVQSRFKIYIIDEAHMVTKEGFNALLKVVEEPPPHVKFIFATTEPDKVIGTIRS 256 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR------------ 223 R F + L LE + + V A GSV Sbjct: 257 RTHHYPFRLVPPKVLTDYLEKICVEEHVQVEPGVLPLVVRAGAGSVRDSLSVLDQLLGSA 316 Query: 224 ---------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 A +L Y D ++ +D + + + ++ E+ ++ A D L Sbjct: 317 GADGVSYQQATSLLGYTPDALLDEMVDALAAGDGKGVFGTIDKVI-EIGQDPRRFAEDLL 375 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 I A SG ++ A AQ + + L R + Sbjct: 376 QRLRDLVIVADVPDALSSGLIDVAADQAQRFE---HQAALIGPGELTRAAEVI 425 >gi|225018615|ref|ZP_03707807.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum DSM 5476] gi|224948609|gb|EEG29818.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum DSM 5476] Length = 536 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 19/283 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + I L +G + HA LF G +G GK T A V Sbjct: 5 LYRKWRPKSFEDVLSQPHITTTLINEIKTGHIAHAYLFTGSRGTGKTTCSKILAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N VD IR +R Sbjct: 65 HPVDGEPCHEC------ECCRGIEDGSILDVVEIDAASNN---------GVDNIRELRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + +RV +ID ++ A NALLK +EEPP V+FIL + + +TI SRC Sbjct: 110 ANFTPVSCKYRVYIIDEAHMLSTGAFNALLKIMEEPPPHVIFILATTEVHKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ L ++ + + A G + A+ +L Sbjct: 170 QRFDFRRIKAEDIVAQLMKITESEEFSLTQEAAELIARLADGGMRDALSLLDQCVAFSSD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 ++++ + + + ++ +D A + E K Sbjct: 230 ITVEVVSSAAGIADREYLFEFHQAVMGRDPAKALALIDELYAK 272 >gi|312129467|ref|YP_003996807.1| DNA polymerase iii, subunits gamma and tau [Leadbetterella byssophila DSM 17132] gi|311906013|gb|ADQ16454.1| DNA polymerase III, subunits gamma and tau [Leadbetterella byssophila DSM 17132] Length = 553 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 26/264 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G I L SG++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFDSVVGQSHITTTLKNAISSGQLAQAFLFTGPRGVGKTTCARILAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C K A +A + L + N +V++IR + Sbjct: 66 QNVSADTEPCNECTS------CKNFAQNASFNIHELDAASNN---------SVEDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRFPPQDGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPAYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---- 231 RC FN + ++ L + I + + + A G + A+ + + Sbjct: 171 RCQIFDFNRIQIKDMADHLANIAIKENIGFEPEALELIALKADGGLRDALSMFDLNVTFS 230 Query: 232 CDKII--SSYIDLIHIPRQEYALQ 253 D+++ ++ +H+ +Y L+ Sbjct: 231 NDRVLRYKDVLENLHVLDYDYYLR 254 >gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum Bf] gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum Ba4 str. 657] gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum Bf] gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum Ba4 str. 657] Length = 541 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIKNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +D++ + E L+ I ++ + + +I D ++ Sbjct: 231 KVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|198283699|ref|YP_002220020.1| DNA polymerase III subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666373|ref|YP_002426328.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248220|gb|ACH83813.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518586|gb|ACK79172.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus ferrooxidans ATCC 23270] Length = 572 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 33/314 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L SGR+HHA LF G +G+GK TL A + Sbjct: 7 LARRWRPQHFDDFVGQEAVVSALRHALDSGRIHHAFLFTGTRGVGKTTLARLLAKCLNCE 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C+ + +A+ D L + + VDE R + Sbjct: 67 RGVSSNPCGECSA------CRSIAAGNFVDLLEVDAASRT---------RVDETRDLLDN 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + T+ SRC Sbjct: 112 VQYAPTAGRYKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL-----HYDC 232 L L + L Q+ ++ D+ + AA GS+ A+ +L H Sbjct: 172 LQFNLRRLDVPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLLDQAIVHGGG 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF---------LIEFILKEIC 283 + ++ + L + + D +Q I D L++ +++ + Sbjct: 232 AVRRDGVLAMLGRSGDDAVLGLIAALVDRDAAQVFAIVGDHLARGMDGPGLLDLVIEGLH 291 Query: 284 KSAKAAALSGQLEE 297 + A A L ++ Sbjct: 292 RIALAQFLPADPDD 305 >gi|146328966|ref|YP_001209844.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus VCS1703A] gi|146232436|gb|ABQ13414.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus VCS1703A] Length = 665 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 134/359 (37%), Gaps = 55/359 (15%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + I + LS R+HHA LF G +G+GK +L YA + Sbjct: 4 VLARKWRPKTFRELVGQQHITQALSYALDHDRLHHAYLFTGTRGVGKTSLARIYAKSLNC 63 Query: 61 NPDFSKA-PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + A P C ++ D + + + +DE + + Sbjct: 64 LINGTSAQPCGQC------EHCLEIDQGRFPDLIEVDAASRR---------GIDETKELL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 L G ++V +ID V R + NALLK+LEEPP V FIL + + +T+ S Sbjct: 109 DNLPYAPVKGRYKVYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPTTVLS 168 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RCL +++ L + L + +I + AA GS+ + L D+ Sbjct: 169 RCLQFHLKNINPEQLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFL----DQA 224 Query: 236 ISSYIDLIHIPRQEYAL---------QKMQQIADELLSQDQKI----------------- 269 I+ ++ Y L + + +IA+ + I Sbjct: 225 IAYGQGVVKTDDVAYLLGAVPTAQIYRLLTKIAESDARAVRAILTELDAFSPDYMDVLRH 284 Query: 270 AFDFLIEFILKEICKSAKAAALSGQLEEADQ-----IAQIYFSLVKRVHAFSMYNLDRR 323 F L + + ++ + L Q + Q+++ ++ Y D R Sbjct: 285 VFQGLQQITVAQLQAQQNPNEIDQTLVRLAQQLPVELVQLWYQIISDAWQSMPYQPDMR 343 >gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum CIP 105476] gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP 105476] Length = 646 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 111/310 (35%), Gaps = 30/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 72 KTKDIDQPTTVL--DTLGEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 121 QIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L Q+ K+ D + AA GS A+ I D+ I Sbjct: 181 CQRFDLRRIEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L DQ D EF++K A S Sbjct: 237 AHSNGNVSAAEVRTMLGLA----------DQARIIDLF-EFVMKGDVIHALHELRSQYDA 285 Query: 297 EADQIAQIYF 306 AD + + Sbjct: 286 GADPLTILTE 295 >gi|317153154|ref|YP_004121202.1| DNA polymerase III subunits gamma and tau [Desulfovibrio aespoeensis Aspo-2] gi|316943405|gb|ADU62456.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio aespoeensis Aspo-2] Length = 654 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 24/262 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E I+ LS+ R+ A LF G +G+GK TL +A + Sbjct: 9 KYRPQTFAEVAGQEAIKAILSRAAEQNRIAPAYLFSGTRGVGKTTLARIFAKALNCANAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C+ +Q+ + D + + + N +D+ RR++ + Sbjct: 69 TAEPCNQCSN------CRQITAGVAVDVIEIDGASNR---------GIDDARRLKEDIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID + + A NALLK+LEEPP + FI+ + +TI SRC Sbjct: 114 APVECRYKVFIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEPHKFPATIVSRCQHY 173 Query: 185 KFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKII- 236 F LS+ L + LE+L + + GSV ++ +L + ++ Sbjct: 174 TFKMLSQQALVEHLEKLMNAEALQYEPGALQIIAKRGAGSVRDSMSLLGQALAIGEDVLR 233 Query: 237 -SSYIDLIHIPRQEYALQKMQQ 257 S + + Q+ + M+ Sbjct: 234 EESVRGFLGLAGQDVFFRLMEA 255 >gi|148653256|ref|YP_001280349.1| DNA polymerase III subunits gamma and tau [Psychrobacter sp. PRwf-1] gi|148572340|gb|ABQ94399.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Psychrobacter sp. PRwf-1] Length = 751 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 137/365 (37%), Gaps = 38/365 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + K L R+HHA LF G +G+GK T+ + + Sbjct: 7 VLARKYRPKNFHELVGQSHVSKALINAIDHNRLHHAYLFTGTRGVGKTTIARILSKCLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + D + + + K V++ R + Sbjct: 67 ETGVTSTPCGVCSS------CVAIDQGRFIDLIEIDAASRTK---------VEDTRELID 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + TI SR Sbjct: 112 NVPYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISR 171 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L + +++ L Q I + AA GSV A+ + + + Sbjct: 172 CLQFVLRPLPQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAFGQ 231 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 ++ + D++ + + + I Q A IE + ++ + Sbjct: 232 GRLTDETVNDMLGLIDSADLISLLLDIY-----QGNAPALSAHIEQMRAQLVDAGSMFDG 286 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNL---------DRRQMIFHLLSKARECNDLYFR 342 L + Q+ ++ V+ + D Q+ + ++ + RE L Sbjct: 287 LADLLHQIAMVQLLPNVSLNVNDLQAQQITALAAQIGPDVLQLYYQIVIQGREQIKLANT 346 Query: 343 DFYAI 347 A+ Sbjct: 347 PLQAL 351 >gi|37527701|ref|NP_931046.1| DNA polymerase III subunits gamma and tau [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787136|emb|CAE16213.1| DNA polymerase III subunit Tau [Contains: DNA polymerase III subunit gamma] [Photorhabdus luminescens subsp. laumondii TTO1] Length = 658 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I L+ GR+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQIFSDVIGQEYILTALANGLAHGRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITDKPCGKCVN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL SL + LE++ I + R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKSLDIGQISDQLERILKAEHIESDNRARQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + L+ + ++ L + D + + I + A + Sbjct: 226 AIGQGLVTT----------EIVSLMLGTLDDEQPLSIIEALIRAD--GQQVMALVEQVAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + ++ +H +M L Q Sbjct: 274 RGADWEDLLVEILALLHRIAMLQLLPSQ 301 >gi|33519765|ref|NP_878597.1| DNA polymerase III subunit gamma [Candidatus Blochmannia floridanus] gi|33504110|emb|CAD83372.1| DNA polymerase III subunit gamma [Candidatus Blochmannia floridanus] Length = 541 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 142/337 (42%), Gaps = 35/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + K + RMHHA +F G +G GK T+ +A + Sbjct: 5 VFARKWRPKKFCEVVGQLHVVKAIIHSLNLNRMHHAYIFTGTRGSGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + C + S D + + + K V++ R Sbjct: 65 ETQITSDVCGSCKN------CSDIESGCFIDLIEIDAASKSK---------VEDTRSFLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + G ++V +ID V ++R++ NALLK+LEEPP+ V FIL++ + TI SR Sbjct: 110 NVQYSPSQGKFKVYLIDEVHMLSRHSFNALLKTLEEPPKHVKFILVTTEYQKLPETILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIM-----GWDSKRDFVKIAAYGSVARAIKILHYD---- 231 CL F L+ + L+ + ++ +F+ AA GS+ A+ +L Sbjct: 170 CLQFYFKPLNIIQIVTQLKYICNQENINIDTENSLEFLAYAARGSIRDALNLLEQAMILG 229 Query: 232 ----CDKIISSYIDLIHIPRQEYALQ-----KMQQIADELLSQD-QKIAFDFLIEFILKE 281 +I+S + L+HI ++ + +I +++ + I +D+L E IL Sbjct: 230 KNNITIDVINSMLGLLHIEHALSLIESLTNGNINKIMNQIDNYSILGINWDYLFEEILIV 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + K A L+ I +I + KR+H S + Sbjct: 290 LQKIAIYQFSPHSLKNQISIVEI-KDIEKRMHKLSDF 325 >gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] Length = 581 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + L+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALET--LNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] Length = 581 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + L+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALET--LNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|32474299|ref|NP_867293.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] gi|32444837|emb|CAD74839.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] Length = 676 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 28/327 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G + + + L + R+ HA LF G +G+GK + +A L Sbjct: 39 VVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKA-LN 97 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD A NPD S + + S D + + + N +DEIR +R Sbjct: 98 HPDGPTA-----NPDSESDVAQAIDSGEDVDVIEIDGASNR---------GIDEIRSLRA 143 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 144 NVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 203 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + + + L ++ D + + A GS+ + +L ++++ Sbjct: 204 CQRFDFAPVESDKIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLL----EQVL 259 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S D +H Q++ ++A+ + +D A + E I + A + Sbjct: 260 SFSDGHLTADHVHTMLGTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVDAGRLAEQM 319 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMY 318 G + +A + + R A SM+ Sbjct: 320 LGYFRDLMAVAVGCEASLMRYAAASMH 346 >gi|325288352|ref|YP_004264533.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963753|gb|ADY54532.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM 8271] Length = 531 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 147/351 (41%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q L G E +++ L+ S ++ HA LF G +G GK T A + Sbjct: 6 LYREWRPRRFQDLVGQEHVKRILTNALISNKVAHAYLFSGPRGTGKTTAAKILAKALNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + D L + + N +DEIR +R Sbjct: 66 FRRGEEPCNECDS------CQGIDQGQAMDVLEIDAASNR---------GIDEIRNLREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L A +G ++V +ID V + A NALLK+LEEPP V+FI+ + + TI SR Sbjct: 111 VKLAATSGEYKVYIIDEVHMLTAEAFNALLKTLEEPPTGVVFIMATTEPHKVPLTILSRV 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 +F+ +S + + L++ L + + A G + A+ IL ++ D Sbjct: 171 QRFEFHRISPEMIVQRLQEVCDSLDRKIAEEALMVIASKAEGGLRDALSILDQCLLHEGD 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE---------FILKEICK 284 + +++ + + ++ + + +L +D + L + I++E+ + Sbjct: 231 ITLEFVFEILGVVGESFSAD----LLEAILGEDCGLVLTKLNDAVAKGRDPRQIIRELLE 286 Query: 285 SAKAAALSGQLEEADQIA-QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + L G ++ Q+ L ++V + ++ + ++L K Sbjct: 287 YLRQGLLFGAGGREPMLSPQMKNRLTQQVGQAGI---EKILALINVLLKGE 334 >gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str. Houston-1] gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1] Length = 646 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 126/350 (36%), Gaps = 40/350 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + N Q+ D + + + + +D+IR I Sbjct: 72 KTKDIDQPTTVLNTL--GEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 121 QIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L Q+ + D + AA GS A+ I D+ I Sbjct: 181 CQRFDLRRIESAVLSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I ++ M +A DQ D EF++K +A S Sbjct: 237 AHSNGKIS----AVTVRAMLGLA------DQARIIDLF-EFLMKGNVVNALHELRSQYDA 285 Query: 297 EADQIAQIYFSLVKRVHAFSMYN--LDRRQMIFHLLSKARECNDLYFRDF 344 AD + + + +N + R + +L D R Sbjct: 286 GADPL--------TILTELADFNHLVTRLRFTPEILEDLSLTEDERLRSL 327 >gi|150021275|ref|YP_001306629.1| DNA polymerase III, subunits gamma and tau [Thermosipho melanesiensis BI429] gi|149793796|gb|ABR31244.1| DNA polymerase III, subunits gamma and tau [Thermosipho melanesiensis BI429] Length = 460 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 28/284 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G ++K + + HA +F G +G GK T+ A + Sbjct: 4 LYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P MCN + D L L + N +DEIR+IR Sbjct: 64 NPQEIEPCNMCNA------CISIDKGNFMDVLELDAASNR---------GIDEIRKIRET 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID + + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 109 VNYHTAQGKYKVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 I F ++S ++ K L E I + A G + A+ IL +++I+ Sbjct: 169 QVIDFKNISNKDIIKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTIL----EQVIN 224 Query: 238 SYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIE 276 S I I L ++++ + L + D K + E Sbjct: 225 SAGKDIKIEDVRETLGLIPDTIIEKLLENLENNDIKSTLKLIDE 268 >gi|302336636|ref|YP_003801842.1| DNA polymerase III subunits gamma and tau [Spirochaeta smaragdinae DSM 11293] gi|301633821|gb|ADK79248.1| DNA polymerase III, subunits gamma and tau [Spirochaeta smaragdinae DSM 11293] Length = 581 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 24/290 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G + + LS SGR+ HA LF G +G+GK + A + Sbjct: 5 VTATRKRPQGFETLVGQDFVVSTLSSAVSSGRIAHAYLFSGPRGVGKTSAARLLAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP C+ ++++ D + + + N +V+++R I+ Sbjct: 65 EKGPTPAPCGECSS------CQEISRGNSLDVIEIDGASNT---------SVNDVREIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N+G ++V +ID V ++ +A NALLK++EEPP ++FI + + +TIRSR Sbjct: 110 EVLFAPNSGRYKVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEIHKVPATIRSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---D 233 C F + + L +L+I D ++ A GS+ A + D Sbjct: 170 CQQFNFRLIQPETIKNKLAEAAAELQIEAEDEALFWIAKEATGSLRDAYTLFDQVASFSD 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 K I+ ++ I L+++ +A+ L +D A + + + Sbjct: 230 KGIT--LEEIRQKLGLVGLERINGVAEALAEEDAGKAIELTESVLADGVA 277 >gi|261414697|ref|YP_003248380.1| DNA polymerase III, subunits gamma and tau [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371153|gb|ACX73898.1| DNA polymerase III, subunits gamma and tau [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326946|gb|ADL26147.1| putative DNA polymerase III, gamma and tau subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 575 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 102/266 (38%), Gaps = 24/266 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I K L GR+HHA LF G +G+GK T A + Sbjct: 6 MARKWRPQSFSDMVGQEHIAKTLENAIQGGRLHHAFLFTGTRGVGKTTSARILARTLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K +A D + + N +VD IR + Sbjct: 66 GSDPLHPCGECDS------CKDIAGGNPMDVYEIDAASNT---------SVDNIRDVIER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V ++ A NALLK+LEEPP V+FI + + TI SR Sbjct: 111 VQYPPVIGKYKIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRV 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F L+ + + L EQ I D D A GS+ + Sbjct: 171 QRFDFKRLTVDQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFTGN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQI 258 + S ++ IP E +Q I Sbjct: 231 EMTAESVRSVLGIPPVELFFSLIQSI 256 >gi|188997277|ref|YP_001931528.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium sp. YO3AOP1] gi|188932344|gb|ACD66974.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium sp. YO3AOP1] Length = 501 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 124/311 (39%), Gaps = 37/311 (11%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P Q + G E + K L R+ HA +F G +G+GK T+ + + Sbjct: 8 RKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIARILSKVLNCKNP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C ++ + D + + N +D+IR IR + Sbjct: 68 VDYESCNQCEN------CIEIDKGSFPDMYEIDAASNR---------GIDDIRMIRDNVG 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G ++V +ID + + A NALLK+LEEPP + +FIL + I TI+SRC + Sbjct: 113 YQPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQT 172 Query: 184 IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY--------- 230 F ++ + L ++ KI + + + G + + +L Sbjct: 173 FIFKPPTKEQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASLLDQAVTYAEGKL 232 Query: 231 ---DCDKIIS----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 D ++I+ SY+ ++ + + ++ D L +D+ + + +L+ I Sbjct: 233 TRKDVEEILGIVPYSYVQKFLRNIKDLKVDENIKLIDTL--EDEGYDINVFWKQLLEAIH 290 Query: 284 KSAKAAALSGQ 294 K+ AL + Sbjct: 291 KTLIDLALDKE 301 >gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275] gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275] Length = 560 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 24/284 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L SG + HA +F G +G GK T +A V Sbjct: 5 LYREYRPQKFSDVVGQEHIIRTLKNEIMSGNIAHAYMFSGTRGTGKTTAAKIFARAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + + D + + N +VD++R IR Sbjct: 65 NPKDGEPCNECES------CKSILNDSTVDIFEIDAASNN---------SVDDVREIRES 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T ++V +ID +++ A+NALLK++EEPP+ V+FI + ++ T+ SRC Sbjct: 110 VKYTPANSKYKVYIIDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY---DCDK 234 F ++ + + + + + + + + G++ A+ IL DK Sbjct: 170 QRFDFKRITVEEMKERMRYICSKEGVEVEEDALSVIARNSQGALRDALSILDRCILFGDK 229 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + Y D++ I + ++ +AD++++ + A + FI Sbjct: 230 YLR-YEDVVEIL-GIVNIDEIFGLADDIITHNVAAALKKIDSFI 271 >gi|146296344|ref|YP_001180115.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409920|gb|ABP66924.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 535 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 24/287 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + E I K L ++ HA +F G +G GK T A V Sbjct: 5 LYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EVCQSILNEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + RV +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 110 VRYPPSMCKRRVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L++ KI D + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +L+ + E + + I + ++ ++ E + Sbjct: 230 HISYKFVANLLGVTSTEIVKEYLNAIVENDSNKGLRVVNRLWDEGMD 276 >gi|260551269|ref|ZP_05825471.1| DNA polymerase III [Acinetobacter sp. RUH2624] gi|260405726|gb|EEW99216.1| DNA polymerase III [Acinetobacter sp. RUH2624] Length = 703 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTATPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + IH + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGSIHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|92113582|ref|YP_573510.1| DNA polymerase III subunits gamma and tau [Chromohalobacter salexigens DSM 3043] gi|91796672|gb|ABE58811.1| DNA polymerase III, gamma subunit [Chromohalobacter salexigens DSM 3043] Length = 723 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 125/332 (37%), Gaps = 33/332 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L GR+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFHELVGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 RQGVTSVPCGEC------ETCREIDEGRFVDLIEVDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYAPTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ + L + + + + AA GS+ A+ + + + Sbjct: 170 CLQFTLKNMPPERVVGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAFGQ 229 Query: 233 DKIISSYIDLI----------HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 ++ + + + + + + + + +Q F +++ + Sbjct: 230 GEVRHADVAAMLGTLDHRHLLALAEALAEVDAARVLQEVASLAEQGPDFGGILDDLAGIF 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + A A + L+ L R A Sbjct: 290 HRLAIAQMVPDALDNGHGDRDTLLPLAARFTA 321 >gi|163857866|ref|YP_001632164.1| DNA polymerase III subunits gamma and tau [Bordetella petrii DSM 12804] gi|163261594|emb|CAP43896.1| DNA polymerase III subunit Tau [Bordetella petrii] Length = 736 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 37/333 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ S R+HHA LF G +G+GK TL A + Sbjct: 32 VLARKWRPRSFDTLVGQDHVVRALTHALDSQRLHHAWLFTGTRGVGKTTLSRILAKSLNC 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + D+L L + N V+E+ ++ Sbjct: 92 ETGITSKPCGQCRA------CTEIDAGRFVDYLELDAASNR---------GVEEMTQLLE 136 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP V FIL + I T+ SR Sbjct: 137 QAVYAPGAGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 196 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL + + + L+ + + AA GS+ A+ + + Y Sbjct: 197 CLQFNLKQMPPDAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSLTDQAIAYSA 256 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQI-----------ADELLSQDQKIAFDFLIEFILK 280 + + ++ Q + ++ ++ + ADEL ++ A +L Sbjct: 257 GNLTEDAVRGMLGTIDQRHLVRLLEALPAGDATGVLAVADELSTRGLSYAGALADLAVL- 315 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + + A + G D +A L +H Sbjct: 316 -LSRVAIEQRVPGATPADDPLAADISRLAGVLH 347 >gi|108761627|ref|YP_630176.1| DNA polymerase III subunits gamma and tau, truncated [Myxococcus xanthus DK 1622] gi|108465507|gb|ABF90692.1| DNA polymerase III, gamma and tau subunits, truncated [Myxococcus xanthus DK 1622] Length = 402 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 131/342 (38%), Gaps = 39/342 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + ++ R+ HA LF G +G+GK T A + Sbjct: 5 VLARKWRPQKFDDMTGQEHVVRTVANAIKIDRVAHAYLFCGPRGVGKTTAARLLAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++A+ D + + N V+ +R IR Sbjct: 65 EKGPTAQPCGECRA------CTEIAAGTSVDVAEIDGASNN---------GVENVREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ +ID V ++ A NALLK+LEEPP V FI + + + TI SR Sbjct: 110 NAKYLPQRDRHKIYIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + + L+++ D V + G + A+ +L D+++ Sbjct: 170 CQRHNFRRIPAARMLQRLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLL----DQVL 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEF---------ILKEI 282 +S AL + Q AD L+ +D K + + E + +E+ Sbjct: 226 ASCGATPSDEEVADALGAIDRTLVQDFADALVHKDAKRVLERVEEVFNRGLDLKRLAEEL 285 Query: 283 CKSAKAAALSGQLEEA-DQIAQIYFS-LVKRVHAFSMYNLDR 322 + ++ L +A D++A+ L+ L R Sbjct: 286 AFQLRHLFVTKTLGKAPDELAESEQKALMALAQDAEAAQLTR 327 >gi|304392342|ref|ZP_07374283.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130] gi|303295446|gb|EFL89805.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130] Length = 672 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 122/317 (38%), Gaps = 27/317 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 30 VLARKYRPSSFADLIGQEPMVRTLRNAFSTGRIAQAYMLTGVRGVGKTTTARILARALNY 89 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + D + + + + + +IR I Sbjct: 90 ESDTQKQPTLDLSTP--GIHCADIMEGNHVDVIEMDAASHT---------GIGDIREIIA 138 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + TI SR Sbjct: 139 AVRYKPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITILSR 198 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L ++ I D + A+ GSV A+ +L D+ I Sbjct: 199 CQRFDLRRIEAGEMVDHLGKIAKLESIAVEDEALAMIARASEGSVRDALSVL----DQAI 254 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + H + A + + + D L D+ D EF +K +A A + Q + Sbjct: 255 A------HASAESDATVRAEGVRDMLGLADRARVIDLF-EFCMKGDIAAA-LAEMKAQHD 306 Query: 297 EADQIAQIYFSLVKRVH 313 A + L VH Sbjct: 307 VGADPATVLTDLADFVH 323 >gi|15675296|ref|NP_269470.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes M1 GAS] gi|71910925|ref|YP_282475.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes MGAS5005] gi|9789547|gb|AAF98348.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes] gi|13622473|gb|AAK34191.1| DNA polymerase III subunits gamma / tau [Streptococcus pyogenes M1 GAS] gi|71853707|gb|AAZ51730.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS5005] Length = 556 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 126/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + A+ IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVAI----AIAEEITGSISILALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|157369378|ref|YP_001477367.1| DNA polymerase III subunits gamma and tau [Serratia proteamaculans 568] gi|157321142|gb|ABV40239.1| DNA polymerase III, subunits gamma and tau [Serratia proteamaculans 568] Length = 650 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 128/324 (39%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRSQLETVLQAEQITSDQRALQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + Q+ L + + L+ +++ AA G Sbjct: 226 A-------MGQGQVTTATVSQMLGTLDDEQPLAILEALVSADGEKVMAQVAQAASRGV-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +H +M L Sbjct: 277 ---DWENLLIETLALLHRIAMVQL 297 >gi|268608024|ref|ZP_06141754.1| DNA polymerase III subunits gamma and tau [Ruminococcus flavefaciens FD-1] Length = 539 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 33/351 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + L SG+ HA LF G +G GK T A V Sbjct: 5 LYRKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAVNCR 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + S AL D + + + N VD IR +R Sbjct: 65 NMKDGNPCLECD------ICRDADSGALTDIVEIDAASNN---------GVDNIRDLRDA 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + G +++ +ID V ++ A NALLK +EEPP V FIL + + +TI SRC Sbjct: 110 AVYTPDRGQYKIYIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ L EQ ++ D + A G + A+ +L Sbjct: 170 QRFDFRRIKPEDIAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRCSVGGEE 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDF---LIEF------ILKEICKSAKA 288 D++ + + + + + D A L + + +E+ + Sbjct: 230 IDEDVVSAAAGIAGRDYLFGLLEAINTGDTAKALSITASLYDMSKDIGRLCEELISQLRN 289 Query: 289 AALSGQLEEADQ--IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 L + + I + + K LD I +S +EC+ Sbjct: 290 IMLIKVSPDTAESLIVCVAEEMQKLRELADSTELD---TIMSHISILQECS 337 >gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|258615716|ref|ZP_05713486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecium DO] gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] Length = 581 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + L+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALET--LNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|237808962|ref|YP_002893402.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM 9187] gi|237501223|gb|ACQ93816.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM 9187] Length = 760 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 43/342 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRNFHEVMGQQHVLQALSNALDQGRLHHAYLFSGTRGVGKTTIARILAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D L + + K V++ R + Sbjct: 65 ETGITSRPCGQCSA------CREIDQGNFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPARGRFKIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ + + L++ ++ + + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALTREQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSL----SDQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIA-------------FDFLIEFI 278 + L+ + L +++ QI L ++D +D L + Sbjct: 226 AYGNGLLQAETVQQMLGTLDHRQLYQILSLLAARDGAALMQQIGSLAELAPDYDQLHVEL 285 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRV--HAFSMY 318 + ++A L Q E + L +++ +Y Sbjct: 286 ASLLHRTAMWQLLGQQTEPGADDTEELQLLAEQIPPEELQLY 327 >gi|71903770|ref|YP_280573.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS6180] gi|71802865|gb|AAX72218.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS6180] Length = 561 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISMLALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|170754521|ref|YP_001779654.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B1 str. Okra] gi|169119733|gb|ACA43569.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B1 str. Okra] Length = 541 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +D++ + E L+ I ++ + + +I D ++ Sbjct: 231 KVEYDQVLDMLGLVTNENLLRITNSIIEKDIEKSMRIIEDIVL 273 >gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum NCTC 2916] gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2 str. Kyoto] gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum NCTC 2916] gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2 str. Kyoto] gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum H04402 065] Length = 541 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +D++ + E L+ I ++ + + +I D ++ Sbjct: 231 KVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F str. Langeland] gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F str. Langeland] gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F str. 230613] Length = 541 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 114/287 (39%), Gaps = 28/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +D++ + E + +I D ++ +D + + + + +L Sbjct: 231 KVEYDQVLDMLGLVTNE----NLLRITDSIIEKDVEKSMRIIEDIVL 273 >gi|308048898|ref|YP_003912464.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica DSM 9799] gi|307631088|gb|ADN75390.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica DSM 9799] Length = 830 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 36/356 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + K L+ R+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPASFDQVVGQEHVLKALTHALEQNRLHHAYLFTGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++++ D L + + K VD+ R I Sbjct: 65 ETGITATPCGQC------SHCREISEGRFVDLLEIDAASRTK---------VDDTREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + T+ SR Sbjct: 110 NVQYQPVRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL S+ + L ++ ++ + + + AA GSV + + H Sbjct: 170 CLQFNLKSVPLARISAHLAKVLEADQVPFEPAALELLAKAADGSVRDGMSLTDQAIAHGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA----DELLS-QDQKIAFDFLIEFILKEICKSA 286 ++S ++ YAL+ +Q +A D L++ D+ AF + +LK++ Sbjct: 230 GQLALASVQAMLGTLDSGYALRLVQGLAQGQPDALMTVLDEVEAFAPDHDDLLKQMAALL 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF--HLLSKARECNDLY 340 AL A + + ++ LDR Q+ +L++ R+ L Sbjct: 290 HQVALCQFNLRAADLGEQGNEVLALAQ-----TLDREQVQLWYQMLTQGRQDLALA 340 >gi|55821183|ref|YP_139625.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus LMG 18311] gi|55737168|gb|AAV60810.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus LMG 18311] Length = 550 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + + + LE+ + D + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIISRHAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q +A+E+ A D + + + A + L + Sbjct: 226 LSADN----------NVSQSVAEEITGSIGLTALDSFVASVRNQDTTKA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|297621642|ref|YP_003709779.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila WSU 86-1044] gi|297376943|gb|ADI38773.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila WSU 86-1044] Length = 452 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 18/234 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + I L RM HA LF G +G GK TL +A + Sbjct: 6 VLARKYRPQTFREVLGQDAIVATLKNGIKKRRMAHAYLFSGSRGTGKTTLARLFAKALNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 AP C P K++A+ + D L + + N +D+IR+I Sbjct: 66 Q-----APSNDCEPCNACSSCKEIAAGSSLDVLEVDGASNR---------GIDDIRQINE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +G +++ +ID V + + A NALLK+LEEPP+KV F + +L TI SR Sbjct: 112 TVGYSTASGRYKIYIIDEVHMLTKEAFNALLKTLEEPPEKVKFFFATTEPHKVLPTILSR 171 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 C N + ++++ L E+ + V A G + A +L Sbjct: 172 CQRFNLNRIPQDSIIGKLKRMTEEQGFQADEDALRLVANRADGGLRDAESLLDQ 225 >gi|254882691|ref|ZP_05255401.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA] gi|319641967|ref|ZP_07996634.1| DNA polymerase III [Bacteroides sp. 3_1_40A] gi|254835484|gb|EET15793.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA] gi|317386392|gb|EFV67304.1| DNA polymerase III [Bacteroides sp. 3_1_40A] Length = 603 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 66 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 171 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 231 GGNITYKSVIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVL 274 >gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] Length = 558 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 126/334 (37%), Gaps = 36/334 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L +GR+ HA +F G +G GK T A + Sbjct: 6 LYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D + + + N +DEIR +R Sbjct: 66 GREGAEPCNRCES------CRAVNEGISVDVIEIDAASNR---------GIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +RV +ID V + A NALLK+LEEPP+ + IL + + TI SRC Sbjct: 111 IRFAPAAGRYRVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F + ++ K L+++ ++ + + AA G + A+ IL Sbjct: 171 QRFDFRRIIPADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGM 230 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE---------FILKEICK 284 K+ + + I + AL +M A L + + A + E +E+ Sbjct: 231 KVTEAGVHQILGTVRTDALDRM---AGCLAAGEAGRALRLVSELAGEGKDLRLFARELAG 287 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 +A L ++ + + + + + Sbjct: 288 YLRALLLE-KISPGTPAGEAWGDTARMAAQAAEF 320 >gi|320546449|ref|ZP_08040764.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus ATCC 9812] gi|320448834|gb|EFW89562.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus ATCC 9812] Length = 559 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 121/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 HQVNGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTANVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + I + A G + A+ IL Sbjct: 170 QRFEFKAIKPAAIREHLGHILDKEGISYDKDALTLIARRAEGGMRDALSILDQALSLTTD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +++ L IA+E+ A D + +L + A L + Sbjct: 230 NHVSL--------------AIAEEITGSISMAALDDFVANVLAQETSKALE-NLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|148378038|ref|YP_001252579.1| DNA polymerase III, gamma and tau subunits [Clostridium botulinum A str. ATCC 3502] gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A str. ATCC 19397] gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A str. Hall] gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str. ATCC 3502] gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A str. ATCC 19397] gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A str. Hall] Length = 541 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +D++ + E L+ I ++ + + +I D ++ Sbjct: 231 KVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|21672731|ref|NP_660798.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008380|sp|Q8K983|DPO3X_BUCAP RecName: Full=DNA polymerase III subunit gamma gi|21623376|gb|AAM68009.1| DNA polymerase III subunit tau [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 363 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 163/356 (45%), Gaps = 43/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +++ G + I K +S + G++HHA L G +G+GK T+ A + Sbjct: 5 ILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C +++ DF+ + + K V+EIR I Sbjct: 65 EIGITSLPCRKCT------ICQEIEKGICLDFIEIDAASRTK---------VEEIREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T + ++V +ID V ++R++ NALLK+LEEPPQ + FIL + I TIRSR Sbjct: 110 NIYYTPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL K N LSE +++ L+ + + + A GS+ A+ +L + Sbjct: 170 CLHFKLNILSEEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSK 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADE-------LLSQDQKIAFDFLIEFILKEICK 284 + + + +++ IP +++A + + ++ LL++ KI ++ + IL E+ + Sbjct: 230 NNINLKNTTEMLGIPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLEW--QNILIEMMR 287 Query: 285 SAKAAALSGQLEEADQIAQIY-----FSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+ + QI+ + K S YN+ Q+ + +L K R+ Sbjct: 288 FLHHIAMLKSYPKI--WNQIFIKNNENEIKKIAENNSKYNI---QLCYKILLKGRK 338 >gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CC9311] gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. CC9311] Length = 643 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 108/304 (35%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L SGR+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNCLSHD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A D + + + N VD IR + Sbjct: 71 GPTPQPCGTC------ELCNTIARGTALDVIEIDAASNT---------GVDNIRDLIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + L L EQ I V A G + A +L Sbjct: 176 RFDFRRIPLEALNSHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 D + Q++ +A+ L + + + + A L+G L + Sbjct: 236 KADAVWDLLGAVPEQELLNLAEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|237710325|ref|ZP_04540806.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA] gi|237727844|ref|ZP_04558325.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434700|gb|EEO44777.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229455787|gb|EEO61508.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA] Length = 603 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 66 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 171 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 231 GGNITYKSVIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVL 274 >gi|300721962|ref|YP_003711242.1| DNA polymerase III subunit tau and gamma [Xenorhabdus nematophila ATCC 19061] gi|297628459|emb|CBJ89024.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Xenorhabdus nematophila ATCC 19061] Length = 654 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 128/328 (39%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQIFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +K P C ++ D + + + K V++ R + Sbjct: 65 ETGITKTPCGQCTN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L N + LE +I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVNQISSQLEHVLHAEQIESDFRARQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + Q+ L + L+ +++ + A G Sbjct: 226 A-------LGGGKLTSDIVSQMLGTLDDAQPLEIIEALVHADGQQVMALVEQVASRGM-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + + +H +M L +Q Sbjct: 277 ---DWENLLVETLSLLHRIAMLQLLPQQ 301 >gi|270263611|ref|ZP_06191880.1| DNA polymerase III subunits gamma and tau [Serratia odorifera 4Rx13] gi|270042495|gb|EFA15590.1| DNA polymerase III subunits gamma and tau [Serratia odorifera 4Rx13] Length = 649 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 127/324 (39%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQIRNQLETVLQAENITSDQRALQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + Q+ L + + L+ +++ AA G Sbjct: 226 A-------MGQGQVTTATVSQMLGTLDDEQPLAILEALVSADGEKVMAQVAQAASRGV-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +H +M L Sbjct: 277 ---DWENLLIETLALLHRIAMVQL 297 >gi|261345764|ref|ZP_05973408.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541] gi|282566253|gb|EFB71788.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541] Length = 648 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 129/324 (39%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ENGITATPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LE I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVDQISEQLELILNAENIEHDTRGRQLIARAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + Q+ L + + L+ + + AA G Sbjct: 226 A-------MGQGTVTAEIVSQMLGTLDDEQPLAIIEALVRADGLAVMAQVEQAASRG--- 275 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + ++ ++H +M L Sbjct: 276 --ADWENLLVEILAQLHRIAMIQL 297 >gi|94990691|ref|YP_598791.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS10270] gi|94544199|gb|ABF34247.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10270] Length = 556 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISMLALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca DW4/3-1] Length = 404 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 129/342 (37%), Gaps = 39/342 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E I + ++ R+ HA LF G +G+GK T A + Sbjct: 5 VLARKWRPQTFDDMTGQEHIVRTIANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C ++ S D + + N V+ +R IR Sbjct: 65 EQGPTASPCGTCRA------CTEITSGTSVDVAEIDGASNN---------GVENVREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ +ID V ++ A NALLK+LEEPP V FI + + + TI SR Sbjct: 110 NAKYLPQRDRHKIYIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + + L+Q+ D V + G + A+ +L D+++ Sbjct: 170 CQRHNFRRIPAARMLQRLKQICEAEGAGISDRSLSLVVRQSEGGMRDALSLL----DQVL 225 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILK--EICKSAKAA 289 +S AL + Q A+ L+ +D + + + E + ++ + A+ Sbjct: 226 ASCGAQPTDESVAEALGAIDRTVVQDFAEALVRKDARKVLERVEETFNRGLDLKRLAEEL 285 Query: 290 ALS--------GQLEEADQIAQIYFS-LVKRVHAFSMYNLDR 322 AL E ++A+ L+ L R Sbjct: 286 ALQLRHLFVTKAVGEAPAELAESEQKALIALAQEADSAQLAR 327 >gi|254293230|ref|YP_003059253.1| DNA polymerase III subunits gamma and tau [Hirschia baltica ATCC 49814] gi|254041761|gb|ACT58556.1| DNA polymerase III, subunits gamma and tau [Hirschia baltica ATCC 49814] Length = 619 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 125/320 (39%), Gaps = 30/320 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 39 VLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRIAHAFMLTGVRGVGKTTTARLLARALNY 98 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + D + P + P + + D L L + V ++R + Sbjct: 99 SRDGVEEPSVQLS--PVGRHCQAIMESRHPDVLELDAASRT---------GVADMRELLD 147 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NALLK+LEEPP V FI + + T+ SR Sbjct: 148 GVRYSPVNARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR 207 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C L+ + L L E+ + + AA GS A+ +L I+ Sbjct: 208 CQRFNLARLTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVLDQ---AIV 264 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S D + + + D L D+ FD L I E K A + QL+ Sbjct: 265 QSTGDEVS----------VDAVRDMLGLADRARVFDLLDAAIAGE-HKVALEET-NAQLQ 312 Query: 297 EADQIAQIYFSLVKRVHAFS 316 E + + L+ + + Sbjct: 313 EGAEAQILMKDLLDAMAEIA 332 >gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] Length = 594 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPTNFDDVVGQHALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + + + L + N ++IR + Sbjct: 66 LHPGPGGEACGECES------CQAFQAGRSLNVHELDAASNNSA---------EDIRALI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ G ++V +ID V ++ AANA LK+LEEPP +FIL + +L TI S Sbjct: 111 EQVNILPQMGRYKVFIIDEVHMLSTAAANAFLKTLEEPPAHAIFILATTEKQKLLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC FN + N++ L E I ++ + + A G + A+ I Sbjct: 171 RCQIYDFNRMEVNDIVHHLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFDQ 225 >gi|284006438|emb|CBA71683.1| DNA polymerase III subunit gamma/tau [Arsenophonus nasoniae] Length = 659 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 29/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQTFTDVVGQQHVLTALANGLQQQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S+ P C ++A D + + + K V++ R + Sbjct: 65 EVGISQNPCGQCVN------CLEIAHGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + T+ SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + LE++ +I R + AA GS+ A+ + + Sbjct: 170 CLQFHLRTLDIDQISSQLERILAAEQISSDKRARQLIARAAEGSLRDALSLTDQAIAMGQ 229 Query: 233 DKIIS-SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICKSA 286 K+++ S ++ I E L ++ I + + D + E +L E+ Sbjct: 230 GKVLADSVSQMLGILNDEQPLAIIEAIVHADGQKMMALVEDIALRGSDWENVLIEMLSLI 289 Query: 287 KAAALSGQLE 296 A+ L Sbjct: 290 HRIAMIQLLP 299 >gi|262372722|ref|ZP_06066001.1| DNA polymerase III [Acinetobacter junii SH205] gi|262312747|gb|EEY93832.1| DNA polymerase III [Acinetobacter junii SH205] Length = 673 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 142/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCRAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + L++ I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITTHLTTILDKESINADRDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS--QDQKIAFDFLI----------EFILKEI 282 + +H + L + + I D +L+ Q+Q+ L+ +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAIHQNQQARVSQLLLQFRQQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEEAD--QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L + +I +++ S +L Q+ + + K R Sbjct: 285 VSTLHELALLQYLPDLALKYSEEINRKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|55823095|ref|YP_141536.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus CNRZ1066] gi|116627908|ref|YP_820527.1| DNA polymerase III subunits gamma and tau [Streptococcus thermophilus LMD-9] gi|55739080|gb|AAV62721.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus CNRZ1066] gi|116101185|gb|ABJ66331.1| DNA polymerase III, tau subunit [Streptococcus thermophilus LMD-9] gi|312278488|gb|ADQ63145.1| DNA polymerase III, tau subunit [Streptococcus thermophilus ND03] Length = 550 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + + + LE+ + D + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIISRRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q +A+E+ A D + + + A + L + Sbjct: 226 LSADN----------NVSQSVAEEITGSIGLTALDSFVASVRNQDTTKA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3 str. Loch Maree] gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3 str. Loch Maree] Length = 541 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 66 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 171 QRFDFRRIRNEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +D++ + E L+ I ++ + + +I D ++ Sbjct: 231 KVEYDQVLDMLGLVTNENLLRITNSIIEKDVEKSMRIIEDIVL 273 >gi|261886243|ref|ZP_06010282.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 537 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 143/357 (40%), Gaps = 41/357 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + LS SGR+ HA LF G +G GK + +A +L Sbjct: 4 LALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C D + + + + K +D+IR + Sbjct: 64 QGIGSHPCEVCAN------CVMANEGRHLDIIEMDAASHRK---------IDDIRELIEH 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 109 TKYSPSSARFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 168 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S++++ K LE + I + + + GS+ + +L Sbjct: 169 QHFRFKPISKHDILKHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHE 228 Query: 232 --CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------IEFILKEI 282 K ++ + L+ K++++ + S+D+ + L E I+ E+ Sbjct: 229 FVTQKAVADMLGLL-------DPSKIEEVLSIVASRDRNALLNLLKELSGSDAELIIDEL 281 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + K ++ E + I + +F ++ + D ++ L E +L Sbjct: 282 IINLKDKFINQNSEFSILIFERFFRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNL 338 >gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ] gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ] Length = 551 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 135/345 (39%), Gaps = 33/345 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L +GR+ HA LF G +G+GK + A + Sbjct: 5 VLARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P +++ + D + + N VD++R +R Sbjct: 65 EQGVTLEPCNVC------PHCREITDGSSTDVFEIDGASNT---------GVDDVRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ NA NALLK+LEEPP V FI + + TI SR Sbjct: 110 NSRYLPSHSRYKIYIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAI----KILHYDC 232 C F + + L ++ I+ D+ + GS+ +I ++L + Sbjct: 170 CQRFDFKRVPLIKIVGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIAD-----ELLSQDQKIAFDFLIEFILKEICKSA 286 + + + L+ + + + + L + AF + + +E+ Sbjct: 230 NTVAVEDVATLVGVVDRRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHF 289 Query: 287 KAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +I + L ++ S ++ RR + Sbjct: 290 RNLLVIRSVPKPGEILDLAEAELEELRQQAGEQSAADIQRRLTLL 334 >gi|83814225|ref|YP_446655.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter ruber DSM 13855] gi|83755619|gb|ABC43732.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter ruber DSM 13855] Length = 728 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 134/360 (37%), Gaps = 41/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + E + + L R+ HA LF G +G+GK T A + Sbjct: 8 VTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINC 67 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + R +PC + + + + + N K VD+IR + Sbjct: 68 ETPREE---REDGAEPCCECDSCESFEAGRSLNVFEMDAASNNK---------VDDIREL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V ++D V +++ A NALLK+LEEPP LFI + +L TI Sbjct: 116 REKVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTIL 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L ++ + + + G++ A+ D+ Sbjct: 176 SRCQRFDFRRIPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAF----DQ 231 Query: 235 IISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFL---------IEFILK 280 +S + AL + Q + D + +QD + + ++ +L Sbjct: 232 ALSLCGATLEYGELTQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLV 291 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKR-VHAFSMYNLDRRQMIFHLLSKARECNDL 339 + + + ++ L + + ++ S R ++ + LL+ A + D Sbjct: 292 GLAEHLRNLLVAHSL-GGEALEEVAESTRTRYADEAERFD---EADLLRLLTMAADTEDD 347 >gi|294508590|ref|YP_003572649.1| DNA polymerase III subunit tau [Salinibacter ruber M8] gi|294344919|emb|CBH25697.1| DNA polymerase III subunit tau [Salinibacter ruber M8] Length = 759 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 134/360 (37%), Gaps = 41/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + E + + L R+ HA LF G +G+GK T A + Sbjct: 39 VTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINC 98 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + R +PC + + + + + N K VD+IR + Sbjct: 99 ETPREE---REDGAEPCCECDSCESFEAGRSLNVFEMDAASNNK---------VDDIREL 146 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V ++D V +++ A NALLK+LEEPP LFI + +L TI Sbjct: 147 REKVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTIL 206 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L ++ + + + G++ A+ D+ Sbjct: 207 SRCQRFDFRRIPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAF----DQ 262 Query: 235 IISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFL---------IEFILK 280 +S + AL + Q + D + +QD + + ++ +L Sbjct: 263 ALSLCGATLEYGELTQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLV 322 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKR-VHAFSMYNLDRRQMIFHLLSKARECNDL 339 + + + ++ L + + ++ S R ++ + LL+ A + D Sbjct: 323 GLAEHLRNLLVAHSL-GGEALEEVAESTRTRYADEAERFD---EADLLRLLTMAADTEDD 378 >gi|290580054|ref|YP_003484446.1| DNA polymerase III subunit gamma/tau [Streptococcus mutans NN2025] gi|254996953|dbj|BAH87554.1| DNA polymerase III gamma/tau subunit [Streptococcus mutans NN2025] Length = 558 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + K L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + +L D + + + N VDEIR IR Sbjct: 65 HQADGEPCNNCD------ICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + + + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKTKAIKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + +L+ ++I + + ++ + + E ++ + L Sbjct: 226 LTND------NDVSLEIAEEITGSISLRALD---QYVADLLAHETQQAL--SDLDTIFNN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|150004786|ref|YP_001299530.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482] gi|149933210|gb|ABR39908.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482] Length = 603 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 66 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 171 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 231 GGNITYKSVIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVL 274 >gi|118475756|ref|YP_892561.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus subsp. fetus 82-40] gi|118414982|gb|ABK83402.1| DNA polymerase III gamma/tau subunit [Campylobacter fetus subsp. fetus 82-40] Length = 529 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 143/357 (40%), Gaps = 41/357 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + LS SGR+ HA LF G +G GK + +A +L Sbjct: 4 LALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C D + + + + K +D+IR + Sbjct: 64 QGIGSHPCEVCAN------CVMANEGRHLDIIEMDAASHRK---------IDDIRELIEH 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 109 TKYSPSSARFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 168 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S++++ K LE + I + + + GS+ + +L Sbjct: 169 QHFRFKPISKHDILKHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHE 228 Query: 232 --CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------IEFILKEI 282 K ++ + L+ K++++ + S+D+ + L E I+ E+ Sbjct: 229 FVTQKAVADMLGLL-------DPSKIEEVLSIVASRDRNALLNLLKELSGSDAELIIDEL 281 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + K ++ E + I + +F ++ + D ++ L E +L Sbjct: 282 IINLKDKFINQNSEFSILIFERFFRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNL 338 >gi|325283277|ref|YP_004255818.1| DNA polymerase III, subunits gamma and tau [Deinococcus proteolyticus MRP] gi|324315086|gb|ADY26201.1| DNA polymerase III, subunits gamma and tau [Deinococcus proteolyticus MRP] Length = 810 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 111/296 (37%), Gaps = 20/296 (6%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P++ + G E I+ L GR+ HA LF G +G+GK T A Sbjct: 9 RPIHWDEVVGQEHIKGVLKTALEQGRVGHAYLFSGPRGVGKTTTARLIAMTANCT-GPQP 67 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C + + + + D L + + N +V+++R +R + L Sbjct: 68 KPCGECEN------CRAVRAGSHPDVLEIDAASNN---------SVEDVRELREKVGLAP 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G ++ ++D M+R A NALLK+LEEPP+ V+FIL + I+ TI SRC +F Sbjct: 113 MRGGKKIYILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRF 172 Query: 187 NSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L+ + L E + + A G++ +L + Sbjct: 173 RRLTAEEIAGKLAGLAEGEGVSAEPEALGLIGRLADGAMRDGESLLERMLAAGTAVTRRS 232 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + ++M+ +A L D A E L L +A Sbjct: 233 VEEALGLPPGEQMRALAGALAQGDAGPALSSAGELYRAGFAARTVVEGLVEALSQA 288 >gi|187928128|ref|YP_001898615.1| DNA polymerase III subunits gamma and tau [Ralstonia pickettii 12J] gi|187725018|gb|ACD26183.1| DNA polymerase III, subunits gamma and tau [Ralstonia pickettii 12J] Length = 731 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 139/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 65 VGADGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAVYAPTSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLAAAAQGSMRDALSLTDQA 229 Query: 228 -LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + D ++ ++ Q Y ++ + +ADE + +I A Sbjct: 230 IAYSAGDVSEAAVRGMLGAIDQSYLVRLLDALADENGAALVEIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD + ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDVRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|265751132|ref|ZP_06087195.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238028|gb|EEZ23478.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 603 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 66 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 171 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 231 GGNITYKSVIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVL 274 >gi|257091956|ref|YP_003165597.1| DNA polymerase III subunits gamma and tau [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044480|gb|ACV33668.1| DNA polymerase III, subunits gamma and tau [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 553 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 69/338 (20%), Positives = 132/338 (39%), Gaps = 37/338 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFANLVGQEHVVRALTHALTEQRLHHAYLFTGTRGVGKTTLARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ ++ S D L + + N VDE+R++ Sbjct: 65 ETGVSATPCGTCSA------CLEIDSGRFVDLLEVDAATNT---------RVDEMRQLLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V +ID V ++ +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 NAVYAPTRGRFKVYVIDEVHMLSTSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L+ + I + +A GS+ A+ +L Sbjct: 170 CLQFNLKQMTQPLIASHLKHILEVEAISADTGALHLLARSAAGSMRDALSLLDQAIAHGS 229 Query: 232 ---CDKIISSYIDLIHIPR--------QEYALQKMQQIADELLSQDQ--KIAFDFLIEFI 278 + + + + + + + +IAD++ ++ A + Sbjct: 230 GKVEEAQVREMLGSVDLDQLFSILDALLAGDAAALLRIADDMTARSLSFDAALQEMASLF 289 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFS 316 + A++ + E ++ ++ +L + Sbjct: 290 TRLQIAQLAPRAIADDMPERSRVLELATALDPEFVQLA 327 >gi|19746336|ref|NP_607472.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS8232] gi|19748530|gb|AAL97971.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes MGAS8232] Length = 556 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISILALGGYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|24379964|ref|NP_721919.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans UA159] gi|24377948|gb|AAN59225.1|AE014989_6 DNA polymerase III, gamma/tau subunit [Streptococcus mutans UA159] Length = 558 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + K L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + +L D + + + N VDEIR IR Sbjct: 65 HQADGEPCNNCD------ICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + + + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKTKAIKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + +L+ ++I + + ++ + + E ++ + L Sbjct: 226 LTND------NDVSLEIAEEITGSISLRALD---QYVADLLAHETQQAL--SDLDTIFNN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|228476401|ref|ZP_04061095.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius SK126] gi|228252023|gb|EEK11061.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius SK126] Length = 550 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + + + LE+ + D + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Q +A+E+ A D + + + A + L + Sbjct: 226 ----------LSPDNHVSQAVAEEITGSIGLTALDSFVANVRNQETTQA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|255319321|ref|ZP_05360538.1| DNA polymerase III, subunits gamma and tau [Acinetobacter radioresistens SK82] gi|262379765|ref|ZP_06072921.1| DNA polymerase III [Acinetobacter radioresistens SH164] gi|255303714|gb|EET82914.1| DNA polymerase III, subunits gamma and tau [Acinetobacter radioresistens SK82] gi|262299222|gb|EEY87135.1| DNA polymerase III [Acinetobacter radioresistens SH164] Length = 721 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 144/354 (40%), Gaps = 42/354 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQSHVSRALTNALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + + L++ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITEHLTRILQKEEINADSDAIWQIGESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ +Q L++F +L ++ Sbjct: 225 AYGQGEVHHQDVKEMLGLIDRTIIYDLILAIHQNNQARVSQLLLQFRHQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + AL L + +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPDLGLKYSDEINRKILQLSRLISAQDL---QLYYQIACKGR 335 >gi|262375322|ref|ZP_06068555.1| DNA polymerase III [Acinetobacter lwoffii SH145] gi|262309576|gb|EEY90706.1| DNA polymerase III [Acinetobacter lwoffii SH145] Length = 710 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 139/352 (39%), Gaps = 38/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + D + + + K V++ R + Sbjct: 64 ETGITSTPCEVC------ATCTAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CD 233 CL L+ + + + L + I + +A GS+ A+ + Sbjct: 169 CLQFTLRPLAVDEITEHLGNILSKESIQSDQDAIWQIAESAQGSLRDALSLTDQAIAYGQ 228 Query: 234 KII--SSYIDLIHIPRQEYALQKMQQI-------ADELLSQDQKIAFDFLIEFILKEICK 284 +I D++ + + + I +LL Q ++ A D + +L ++ Sbjct: 229 GVIQHQDVKDMLGLIDRTIIYDLILAIHQNQKAHVSQLLLQFRQQALD--VSLVLDQLIS 286 Query: 285 SAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + AL L + A+I +++ S +L Q+ + + K R Sbjct: 287 TLHELALLQYLPDLSLKYSAEINQKIMQLSGLISAQDL---QLYYQIAYKGR 335 >gi|28895734|ref|NP_802084.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes SSI-1] gi|28810983|dbj|BAC63917.1| putative DNA polymerase III gamma/tau subunit [Streptococcus pyogenes SSI-1] Length = 557 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 66 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 171 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 224 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 225 ----LSLSPDNQVTI----AIAEEITGSISMLALGDYVRYVSQEQATQA-LAALETIYDS 275 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 276 GKSMSRFATDLLTYLRDL 293 >gi|169830250|ref|YP_001716232.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis audaxviator MP104C] gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis audaxviator MP104C] Length = 447 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 133/348 (38%), Gaps = 29/348 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + R+ HA LF G +G GK T A V Sbjct: 6 LYRTWRPQRFGEIVGQDHVVRTLQNAVRAERVAHAYLFCGPRGTGKTTAAKVLAKAVNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D L + + N VDE+R +R Sbjct: 66 ERDGAEPCGECAS------CVSIGTGSAVDVLEIDAASNR---------GVDEVRELRER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+F+L + + TI SRC Sbjct: 111 VKFHPAAGRFKVYIIDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-DCDKII 236 F + +L LE++ + + A GS+ A+ IL Sbjct: 171 QRFDFRRIGRPDLVSRLEEVAAQAGLAVESGVLALIARVADGSLRDALGILDQAAALGGN 230 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + +H + ++++ L + + A +L+E+ K + + E Sbjct: 231 RVTLADLHSILGTVTGEVLERLVGHLAAGETGAAL-----LVLQEVEAQGKELRIIAR-E 284 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMI--FHLLSKARECNDLYFR 342 D + + + A +LDR ++I L ++A + R Sbjct: 285 LTDYLRGLLYGAFGAGGATRS-DLDRERLIEFLALFARAEQEMRFATR 331 >gi|225848978|ref|YP_002729142.1| DNA polymerase III subunits gamma/tau [Sulfurihydrogenibium azorense Az-Fu1] gi|225643961|gb|ACN99011.1| DNA polymerase III subunit gamma/tau [Sulfurihydrogenibium azorense Az-Fu1] Length = 496 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 46/338 (13%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G + + K L R+ HA +F G +G+GK T+ A + Sbjct: 8 RKYRPKSFKEVIGQDFVVKTLKNAVKLNRVSHAYIFAGPRGVGKTTIARILAKTLNCLNP 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 P C ++ + D + + N +D+IR IR ++ Sbjct: 68 QDFEPCNKCEN------CLEIEKGSFPDMYEIDAASNR---------GIDDIRTIRDNVN 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 G +++ +ID + + A NALLK+LEEPP K +FIL + I TI+SRC Sbjct: 113 YQPIKGKYKIYIIDEAHMLTKEAFNALLKTLEEPPPKNIFILATTELYKIPETIKSRCQV 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-------- 231 F +++ + LE KI D D + G + + +L Sbjct: 173 FLFKPPTKSQIKAYLLRILENEKIPYEDQAVDLLSQELEGGMRDSASLLDQAVTYSEGRL 232 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQ--------QIADELLSQDQKIAFDFLIEFILKEIC 283 K + + ++ + + AL ++ ++ DEL +D + + +L + Sbjct: 233 TVKSVEEILGIVPLNYIKKALNYIKNQEVQPFIKLLDEL--EDLGYDLNIFWKELLTNLQ 290 Query: 284 KSAKAAALSGQLEEADQIAQIY--FSLVKRVHAFSMYN 319 KS A+ + +I+ L ++ M+N Sbjct: 291 KSLINIAM-------ENPDEIFSQEDLKSLIYIKDMFN 321 >gi|139473596|ref|YP_001128312.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes str. Manfredo] gi|306827119|ref|ZP_07460411.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes ATCC 10782] gi|134271843|emb|CAM30078.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes str. Manfredo] gi|304430672|gb|EFM33689.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes ATCC 10782] Length = 556 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISMLALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|322372837|ref|ZP_08047373.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150] gi|321277879|gb|EFX54948.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150] Length = 552 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L++ + D + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKQAAIKEHLASILKKEGMTFDDEALTIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q +A+E+ A D + + + A + L + Sbjct: 226 LSSDN----------NVSQAVAEEITGSIGLTALDSFVANVRNQETSQA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|300113235|ref|YP_003759810.1| DNA polymerase III gamma and tau subunit [Nitrosococcus watsonii C-113] gi|299539172|gb|ADJ27489.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus watsonii C-113] Length = 529 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 28/285 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + + L+ GR+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPCDFSQVVGQEQVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + + D + + + VD+ R + Sbjct: 65 KEGVRSTPCGKCQN------CQAIDGGNFVDLIEVDAASRT---------GVDDTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G+++V +ID V + ++ NALLK+LEEPP + F+L + + T+ SR Sbjct: 110 NVHYAPSRGHYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTDPKKLPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL ++ + + L ++ KI + AA GSV A+ +L D+ I Sbjct: 170 CLQFNLRRIASKVIAEHLARILQAEKIPSESHALTLIARAAEGSVRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIE 276 + + + L ++Q + D LL+ D + + + E Sbjct: 226 NYGGGQVIVADVYAMLGSIEQGELFILLDALLAGDGQGLIEKVRE 270 >gi|21910574|ref|NP_664842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS315] gi|21904775|gb|AAM79645.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes MGAS315] Length = 556 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISMLALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] Length = 638 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 33/338 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I + + + R+ HA LF G +G GK ++ A V Sbjct: 6 LYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + A D + + VDEIR +R Sbjct: 66 DLKNGNPCNECAN------CKSINTGASMDVYEIDGASAR---------GVDEIRVLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V +ID V + + A NALLK+LEEPP VLFIL + I TI SRC Sbjct: 111 VRTLPVAGNKKVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 +F+ +S N++ + L + + + + A G + A+ +L Sbjct: 171 QRYEFHRISVNDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAG 230 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 +++ + + DL+ + +E + I S ++ + L + IL ++ + Sbjct: 231 NELSAEIVYDLLGLTDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHF 290 Query: 287 KAAAL---SGQLEEADQIAQIYFSLVKRVHAFSMYNLD 321 ++ + + E + K S LD Sbjct: 291 RSIMICKVNPNAPELSAYGNKISVIQKDAQELSDAYLD 328 >gi|113474658|ref|YP_720719.1| DNA polymerase III s gamma and tau [Trichodesmium erythraeum IMS101] gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium erythraeum IMS101] Length = 695 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 103/265 (38%), Gaps = 25/265 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 + P L G + I + L+ + R+ A LF G +G GK + A + Sbjct: 9 KYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCLSYD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + +P CN + + D + + + N VD IR + Sbjct: 69 HPTPSPCGTCN------VCVGITKGSTLDVIEIDAASNT---------GVDNIRELIERS 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID V ++ +A NALLK+LEEPP+ V+FIL + +L+TI SRC Sbjct: 114 QFAPVQCRYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDK 234 F + + K L + KI + A G + A +L + Sbjct: 174 RFDFRRIPLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEI 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIA 259 + DL+ + + ++ IA Sbjct: 234 TVERVWDLVGAVPERDLMVLVEAIA 258 >gi|212550986|ref|YP_002309303.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549224|dbj|BAG83892.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 77/359 (21%), Positives = 141/359 (39%), Gaps = 37/359 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P Q + G + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 C+ F + + H+ L + N +V+ IR + Sbjct: 66 TCLKEDGEACNECD------FCQSFNENRSHNIYELDAASNN---------SVENIRFLT 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G+++V +ID V ++ +A NA LK+LEEPP +FIL + I+ TI S Sbjct: 111 EQMRIPPQIGHYKVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F+ ++ N++ + LE + I + + A G + A+ I Sbjct: 171 RCQIYDFSRITINDIVEYLEYIAQNENISTEREALNIIAQKADGGMRDALSIFDRVASFS 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + S I+ +++ EY ++ + +L D + L + I K Sbjct: 231 ANNITYQSVIENLNVLDYEYYF----RLVEAILIGDVSCSLLILNKIIRKGFDLQQVIVG 286 Query: 291 LSGQLEEA----DQIAQIYFSLVKRVHAFSMYNLDRR---QMIFHLLSKARECNDLYFR 342 LS + D + F + NL ++ +++ L + EC DL +R Sbjct: 287 LSDFFRDIMVCKDPQTIVLFEIGDSAIREKYLNLSKQCTSDFLYNALELSNEC-DLNYR 344 >gi|320538818|ref|ZP_08038494.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Serratia symbiotica str. Tucson] gi|320030978|gb|EFW12981.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Serratia symbiotica str. Tucson] Length = 642 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 132/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 EAGITATPCGQCTN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL N+L + L++ +I + AA GS+ A+ + + Sbjct: 170 CLQFHLNALDVEQIRNQLQRVLIAEQITSDARALQLLARAADGSMRDALSLTDQAIALGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELL---------SQDQKIAFDFLIEFILKEI 282 ++ ++ + ++ E L ++ +A S + + ++ L+ L + Sbjct: 230 GQVTAATVSQMLGTLDDEQPLAILEALASADGEKVMAQVAQSAARGVDWESLLVETLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L + Q A + L + Sbjct: 290 HRLAMVQLLPAMFDN--QYAALEQRLRELARTLPP 322 >gi|221195173|ref|ZP_03568229.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626] gi|221185076|gb|EEE17467.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626] Length = 723 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 128/351 (36%), Gaps = 36/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P +++ G + + L + G++ HA LF G +G GK T+ A +L Sbjct: 4 LYTKYRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAYLFCGPRGTGKTTMARLLAKALLCR 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C + +A+ D + + + N VD +R I Sbjct: 64 KAPGQLPDGTCEE------CQLIAAGNHPDVVEIDAASNT---------GVDNVREEIIS 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +V +ID V + A NALLK+LEEPP V FIL + +L T+ SR Sbjct: 109 RANYAPVRGKGKVYIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSR 168 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY---DCD 233 F+++ + L+Q + + A G + A+ L D Sbjct: 169 VQRFDFHAIGNEEMLSHLQQVCEAESFQYDARALELIVRHARGGMRDALTSLEQLSVFGD 228 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL---------KEICK 284 ++S I + +L + ++ + +D F+ + + +E+ Sbjct: 229 GVVSLAIAQDFLGEASGSL--LAHVSTAIAKRDVSTLFEQVNTLVDEGRDVLQFTRELAA 286 Query: 285 SAKAA-ALSGQLEEADQIAQIYFSLVKRVHAFSMY-NLDRRQMIFHLLSKA 333 + A ++ + + + Y + DR +L A Sbjct: 287 HIRNAYVMAAVGPDTSALTITDDERTQLAQEVREYRSADRLARALTILGDA 337 >gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281720|gb|EDT47154.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 562 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + +L D + + + N VDEIR IR Sbjct: 65 HQVNGEPCNHCD------ICHDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + L + I + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKLAAIRDHLADILGKEGITYEEDALTLIARCAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D IA+E+ A D + +L A L + Sbjct: 226 LTSDN----------HVSLSIAEEITGSISMTALDDFVANVLANQTSQALT-NLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|306825065|ref|ZP_07458407.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432501|gb|EFM35475.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 551 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +++ ++ + I +L + L QD A D L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALDSL 268 >gi|50914432|ref|YP_060404.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS10394] gi|209559603|ref|YP_002286075.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes NZ131] gi|50903506|gb|AAT87221.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10394] gi|209540804|gb|ACI61380.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes NZ131] Length = 556 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L I + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISILALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|261491572|ref|ZP_05988155.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494932|ref|ZP_05991401.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309341|gb|EEY10575.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312698|gb|EEY13818.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 142/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VNGITAEPCGECAN------CKAIEEGHFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 C+ +L ++ + + LE + I + + AA GS+ ++ + + Sbjct: 170 CMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSLSLTDQAIAMSN 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + ++ ++ + L+ +Q IA D + A + + K + Sbjct: 230 ANITLAIVSQMLGLIDDNQPLELVQAIAQA----DGEKAMAIIEQIAAKGV--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQ----MIFHLLSKARECNDLYFRDFYAI 347 Q+ + + +H +M L + + H L+K D+ F FY + Sbjct: 277 --------DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQF--FYQL 326 >gi|187776529|ref|ZP_02993002.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC 15579] gi|187775188|gb|EDU38990.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC 15579] Length = 544 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 124/327 (37%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L R+ HA LF G +G GK + + V Sbjct: 9 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S L D + + + K +++I+ + Sbjct: 69 NPKDGEPCNEC------EICNKINSGTLMDVIEMDAASKRK---------LEDIKEVIEN 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 VKYPPQEGKNKVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 173 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + +++ L + I D + + + G++ A+ IL D Sbjct: 174 QRFDFRRIRNEEIFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDG 233 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAK 287 +D++ + E L I ++ + + +I D + I +K++ + Sbjct: 234 KVEYDQVLDMLGLVTNENLLIITNSIIEKDVEKSMRIIEDIVLSGKDINNFMKDMITHLR 293 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 + + D+I + + V Sbjct: 294 NILMVKVSKNPDEILDMSSENIDLVKE 320 >gi|254469705|ref|ZP_05083110.1| DNA-directed DNA polymerase [Pseudovibrio sp. JE062] gi|211961540|gb|EEA96735.1| DNA-directed DNA polymerase [Pseudovibrio sp. JE062] Length = 353 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 165/333 (49%), Gaps = 6/333 (1%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL+GHE E L Y S R HHA + G +GIGKATL FR+A +L++PD Sbjct: 22 PREQTRLYGHELAETELLDAYRSQRFHHAWILGGPKGIGKATLAFRFARFILEHPDRFST 81 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 PV N P S + +A+ + D L+L + K +++ + VDE+RR F Sbjct: 82 PVMAANSLYVPPESHSAQMVAAGSHADLLHLRRPWDLKGKRFKRDLPVDEVRRTTGFFGS 141 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA G WR+ ++D D MN++AANALLK LEEPP++ LFIL+SH +L TIRSRC + Sbjct: 142 TAAGGNWRICIVDSADDMNQSAANALLKILEEPPKQSLFILLSHNPGRLLPTIRSRCRKL 201 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 L E + AL ++ G + + A GS+ +A + I + L+ Sbjct: 202 TMRKLEEPMIEHALTEMG-CGPSGNTEALHTLADGSLRQAALAANGGALDIAQEFTGLVE 260 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 + + AD++ ++ + A++ +E + + A S + + + A + Sbjct: 261 TIT-NLDMIRAHGFADKIAARGAEDAWNTFLELARTFLSNQLRKDA-STKPDALVRWADL 318 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + NLDR+Q++ L R+ + Sbjct: 319 WEKVGRAASTADALNLDRKQVVLTFLVDLRKAS 351 >gi|212711281|ref|ZP_03319409.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM 30120] gi|212686010|gb|EEB45538.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM 30120] Length = 648 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 127/328 (38%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITATPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + LE I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVAQISEQLELILNAENIEHDTRARQLIARAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + ++ L + D + + I E A + + Sbjct: 226 A-----MGQGKVTADI-----VSQMLGTLDDEQPLAIIEALIRAEGA--AVMSQVEQAAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + ++ +H +M L + Sbjct: 274 RGADWENLLVEILSLLHRIAMIQLLPAE 301 >gi|306833147|ref|ZP_07466277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis ATCC 700338] gi|304424721|gb|EFM27857.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis ATCC 700338] Length = 559 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 124/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + +I + + A G + A+ IL Sbjct: 170 QRFEFKAIKLAAIREHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +++ L IA+E+ IA D + +L A L + Sbjct: 230 NHVSL--------------AIAEEITGSISMIALDDFVANVLANQTSQALT-NLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLNYLRDL 292 >gi|293392503|ref|ZP_06636823.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582] gi|291424905|gb|EFE98114.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582] Length = 653 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLTLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGQCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + LE +I + AA GS+ A+ + + Sbjct: 170 CLQFHLKALDVEQIRNQLETVLQAEQIASDARALQLLARAADGSMRDALSLTDQAIAMGE 229 Query: 233 DKIISSYID-LIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ S+ + ++ E L ++ + + + + ++ L+ L + Sbjct: 230 GQVTSATVSHMLGTLDDEQPLAILEALVSADGEKVMAQVAQAAARGVDWENLLVETLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L+ A I L + + Sbjct: 290 HRIAMVQLLPSVLD--HHYAAIEQRLRELARSLPP 322 >gi|213586555|ref|ZP_03368381.1| DNA polymerase III subunits gamma and tau [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 233 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 23/242 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLIEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE + I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAI 225 Query: 237 SS 238 +S Sbjct: 226 AS 227 >gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str. Toulouse] gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse] Length = 640 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 112/310 (36%), Gaps = 30/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFSDLIGQETMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + N Q+ D + + + + +D+IR I Sbjct: 72 KTKDIDQPTTVLNTL--GEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 121 QIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 180 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + + D + AA GS A+ I D+ I Sbjct: 181 CQRFDLRRIETAVLSAHLCQIAKHENVKVEDQALSMIARAAEGSARDALSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I L + DQ D EFI+K +A S Sbjct: 237 AYSNGNISAVAVRALLGLV----------DQARIIDLF-EFIMKGDIVNALHELRSQYDA 285 Query: 297 EADQIAQIYF 306 AD + + Sbjct: 286 GADPLTILTE 295 >gi|28209849|ref|NP_780793.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88] gi|28202284|gb|AAO34730.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88] Length = 552 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 118/287 (41%), Gaps = 30/287 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + I L + R+ HA LF G +G GK + A V Sbjct: 9 LYREWRPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAVNCL 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ S+ L D L + N +VD IR I Sbjct: 69 DLRDGEPCNEC------EICKKINSNMLIDIEELDAASNN---------SVDNIRSIIEE 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 114 VYYPPREAKYKVYIMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 173 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++++ L Q D+ + + G++ A+ +L D++IS Sbjct: 174 QRFDFKRIKSEDIFQRLRFIITQQGFFADDNSLRLISRISDGAMRDALGVL----DQVIS 229 Query: 238 ------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 Y D++ I + + ++ D ++ +D + + E I Sbjct: 230 TGNGRVEYEDVVSIL-GLITNENLIKLTDSIIKKDIEECVKIIEEVI 275 >gi|50085108|ref|YP_046618.1| DNA polymerase III subunits tau and gamma [Acinetobacter sp. ADP1] gi|49531084|emb|CAG68796.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor III) [Acinetobacter sp. ADP1] Length = 711 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGITSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + L + +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS--QDQKIAFDFLI----------EFILKEI 282 + +H + L + + I D +L+ Q+Q L+ +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I ++K S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELSLKYSEEINQKILKLAKIVSAQDL---QLYYQIACKGRS 336 >gi|326329503|ref|ZP_08195827.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] gi|325952829|gb|EGD44845.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] Length = 667 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 126/362 (34%), Gaps = 45/362 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L R++HA LF G +G GK T A + Sbjct: 113 LYRRYRPETFAEVIGQDHVTGPLRNALAGNRVNHAYLFSGPRGCGKTTSARILARALNCE 172 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C D C + D + + + + VD+ R +R Sbjct: 173 KAPIADPCGEC--DSCRDLAR--GGPGSIDVIEIDAASHG---------GVDDARDLREK 219 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 220 AFFAPVKSRYKVYIIDEAHMVSTQGFNALLKLVEEPPEHLRFIFATTEPEKVIPTIRSRT 279 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + + E+ I + V A GS+ ++ Sbjct: 280 HHYPFRLFPPKLVSDYIATLCEKEGINVEPAALPLVARAGAGSMRDSLSVMDQLLGGAGP 339 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQD-QKIAFDFLI 275 +L Y D ++ +D + +I + QD ++ D L Sbjct: 340 EGVTYELAAGLLGYTPDALLDEVVDAFAAHDGAAVFGVIDKIIET--GQDPRRFTEDLLR 397 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQ-MIFHLLSKAR 334 I K+ A +G ++ ++ + LV + F ++L R + L++ R Sbjct: 398 RLRDLVIVKAVPDAPATGLIDVSEDGGE---RLVAQAGRFGPHDLSRAADAVATGLTEMR 454 Query: 335 EC 336 Sbjct: 455 GA 456 >gi|291460808|ref|ZP_06600198.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291416581|gb|EFE90300.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 563 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 139/350 (39%), Gaps = 35/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G + + L SG++ HA LF G +G GK + +A V Sbjct: 5 LYRKWRSRDFGELKGQGAVTEALRNQVRSGKIGHAYLFCGTRGTGKTSAAKIFARAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C +++ S + + L + + N V++IR+IR Sbjct: 65 NPQDGNPCNLCRS------CREILSGSSMNVLEMDAASNN---------GVEDIRKIREQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +G +RV +ID V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 110 VEYPPVSGRYRVYIIDEVHMLSAAAFNAFLKTLEEPPEYVVFILATTEPNRLPITILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC----D 233 F +S + + L ++ I ++ GS+ A+ +L D Sbjct: 170 QRYDFRRISSEVIAERLGEIAGAEGIPVSAEALSYIARVGDGSMRDAVSLLDQCSAFQFD 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEICK 284 + I+ Y D + I ++ L +++ + A L E I L + Sbjct: 230 REIN-YEDALGIL-GAVDSSVFSELIRALSAREIRSALSLLSELIEQGRELSQFLSDFLY 287 Query: 285 SAKAAALSGQLEEADQIAQIY-FSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + L+ +E+ + + + + + +++ D LS+ Sbjct: 288 YVRNLLLAKTVEDLSGLVDLSRENFQRLLEDKELFSTDELLRYIRRLSEL 337 >gi|300770797|ref|ZP_07080675.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium spiritivorum ATCC 33861] gi|300762354|gb|EFK59172.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium spiritivorum ATCC 33861] Length = 596 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 120/306 (39%), Gaps = 29/306 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G + I L + ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S+ +C+ K + L + N +VD+IR + Sbjct: 66 EHITSEVEACGVCDS------CKSFQNGNSFSIHELDAASNN---------SVDDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + +G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRIPPQSGKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + ++ + L E+ + + A G + A+ + Sbjct: 171 RCQIFDFNRIRVEDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + S ID ++I +Y ++ D +L ++ + + + + + Sbjct: 231 NKQISYQSVIDNLNILDYDYYF----KLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGG 286 Query: 291 LSGQLE 296 LS L Sbjct: 287 LSSHLR 292 >gi|226354984|ref|YP_002784724.1| DNA polymerase III subunits gamma and tau [Deinococcus deserti VCD115] gi|226316974|gb|ACO44970.1| putative DNA polymerase III, subunits gamma and tau [Deinococcus deserti VCD115] Length = 762 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 111/296 (37%), Gaps = 20/296 (6%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P+ + G E ++ L GR+ HA LF G +G+GK T A + Sbjct: 9 RPIRWDEVVGQEHVKDVLRAALEQGRVGHAYLFSGPRGVGKTTTARLIAMTANCS-GPLP 67 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C + + + D L + + N +VD++R +R +SL A Sbjct: 68 KPCGECES------CLSVRAGSHPDVLEIDAASNN---------SVDDVRDLREKVSLAA 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G ++ ++D M+R A NALLK+LEEPP V+FIL + I+ TI SRC +F Sbjct: 113 MRGGKKIYILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSRCQHYRF 172 Query: 187 NSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L+ + L + + + A G++ +L + Sbjct: 173 RRLTAEEIAGKLSGLAAKEGVRAEPDALQLIGRLADGAMRDGESLLERMLAAGTAVTRVA 232 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + ++++ IA L+ D A + L L A Sbjct: 233 VEEALGLPPGERVRGIAGALVLGDAGSALQGAAQLYRDGFAARTVVEGLVSALGTA 288 >gi|52842953|ref|YP_096752.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630064|gb|AAU28805.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 556 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 141/354 (39%), Gaps = 44/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + D + + + V++ R + Sbjct: 66 KGITSEPCLHCDT------CIAIEQGRYIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V +++++ NALLK+LEEPP V FIL + + T+ SRC Sbjct: 111 IQYAPTNGRFKVYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L L + + L++ ++ D + AA GS+ A+ +L + Sbjct: 171 LQFNLKHLPAELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCET 230 Query: 233 DKIISSYIDLIHIPRQEYALQK-----------MQQIADELLSQDQKIAFDFLIEFILKE 281 + S L+ +Q+YAL M ++ +++++ F ++++ IL Sbjct: 231 KLLASDVKMLLGHTQQDYALLLLQALAKQEAPIMLVLSQQIIAEGGN--FQYVLDEILSY 288 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + L A+I L K+ A Q+ + + K RE Sbjct: 289 LHQITVYQCLGDNNPLISPKAEI-KELAKQFSAADT------QLFYQIGIKGRE 335 >gi|83859372|ref|ZP_00952893.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii HTCC2633] gi|83852819|gb|EAP90672.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii HTCC2633] Length = 586 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 130/360 (36%), Gaps = 35/360 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + SGR+ HA + G +G+GK T A + Sbjct: 37 VLARKYRPQTFDDLIGQEPMVRTLTNAFASGRIAHAYMMTGVRGVGKTTTARLIARALNY 96 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P P +A A D + + + + +IR I Sbjct: 97 ETDEVHQP--SIRLTPPGRHCDAIARSAHVDVMEMDAASRT---------GISDIREILD 145 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ +A NALLK+LEEPP+ V FI + + T+ SR Sbjct: 146 GVRYAPVSARYKVYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 205 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CD 233 C + + L L E+ + AA GSV A+ +L D Sbjct: 206 CQRFDLKRVDRDVLTDHLARICEKENASVECDGLAAIARAAEGSVRDALSLLDQAIVQAD 265 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD-------------FLIEFILK 280 S D I ++ + + L K A D L+ +L Sbjct: 266 AGQSVTADQIRDMLGLADRSRVLDLLEAALENRAKDALDELRHQYDTGADPQVLMRDLLD 325 Query: 281 EICK--SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + KAA S L EA + + L + S+ L + L R D Sbjct: 326 HLHAVSRIKAAGPSADLGEAQETVERLAKLAEAHSLASLGRLWKTA--LTGLEDVRNAPD 383 >gi|320159544|ref|YP_004172768.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] Length = 553 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 134/342 (39%), Gaps = 28/342 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P +++ G + I + L +GR+ HA LF G +G GK T A V Sbjct: 5 LYRKWRPRLWEQVVGQDHIIQTLRNAVRTGRVGHAYLFAGPRGTGKTTTARLLAKAVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D +K P C + D + + + N +V+++R +R Sbjct: 65 EEDPAKRPCDQC------AHCIAVNEGRFLDLIEIDAASNT---------SVEDVRDLRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G ++V +ID V ++ A NALLK+LEEPP +FIL + I +T+ SR Sbjct: 110 KINFAPSQGRYKVYIIDEVHMLSTAAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F + + L Q + + + A GS AI IL Sbjct: 170 CQRHEFRRVPVQQIAALLRQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSSTGE 229 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL-----KEICKSA---KA 288 ++++ A + ++ + D +L+++ + + + ++ + Sbjct: 230 RVTLEMVQSVLGTAAGEPIRLLVDAILARNAAQGLQIIQQTLDGGADPRQFARQVVDYLR 289 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 L ++ A + + + + +DR + L Sbjct: 290 GLLLVRMNNAALVDATAETRAQMAAQAGSFEVDRLVEVIRLF 331 >gi|294778363|ref|ZP_06743786.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus PC510] gi|294447625|gb|EFG16202.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus PC510] Length = 603 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 66 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 171 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 231 GGNITYKSVIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVL 274 >gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis 0140J] gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J] Length = 555 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQSFSEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 HQVNGEPCNQCD------LCQDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSSGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + ++ LE+ + + A G + A+ IL Sbjct: 170 QRFEFKSIKQTDIADHLASILEKEGLSYQAEALSLIARRAEGGMRDALSILDQALSLSSK 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +DL A+E+ A D + +I + + A A L+ E Sbjct: 230 NQVDL--------------STAEEITGSISIKALDEYVTYIYEGNAQEALAC-LNTIFEN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ Sbjct: 275 GKSMSRFATDLLTYFRDL 292 >gi|212694010|ref|ZP_03302138.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855] gi|212663542|gb|EEB24116.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855] Length = 637 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L +G++ HA LF G +G+GK T +A + Sbjct: 40 VSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINC 99 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C F +Q + + L + N +V++IR + Sbjct: 100 QTPTAEGEACNQC--ESCLAFNEQRSYNIH----ELDAASNN---------SVEDIRSLI 144 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 145 EQVRIPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILS 204 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + L+ I + A G + A+ I Sbjct: 205 RCQIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFT 264 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + S I+ +++ EY + + + + + + D L Sbjct: 265 GGNITYKSVIENLNVLDYEYYFKLTNLLLENKVPESMLLFNDVL 308 >gi|228988775|ref|ZP_04148851.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770955|gb|EEM19445.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 548 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I++ + + HA +F G +G GK T+ A + Sbjct: 5 LYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCE 64 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K + ++ D L + + N V++IR IR Sbjct: 65 NLNNEGEPCNECSQ------CKAIRGNSHADVLEIDAASNN---------GVEQIREIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SR Sbjct: 110 QVAYAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + ++ + L + ++ + + + A G + A+ ++ Sbjct: 170 CQRFDFRRIGPRDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFAT 229 Query: 237 SSYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + I D + +++K++ +LL + + + + IL Sbjct: 230 NETITKDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVIL 274 >gi|269120614|ref|YP_003308791.1| DNA polymerase III subunits gamma and tau [Sebaldella termitidis ATCC 33386] gi|268614492|gb|ACZ08860.1| DNA polymerase III, subunits gamma and tau [Sebaldella termitidis ATCC 33386] Length = 496 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 22/289 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + + G I K + ++ HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPQNFEEIAGQGHIVKAIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ +++A+ D + + + N +DEIR ++ Sbjct: 65 TNGISDHPCGTCDN------CREIAAGISMDMVEIDAASNR---------GIDEIRELKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID V + + A NALLK+LEEPP V+FIL + I T+ SR Sbjct: 110 KINYQPVNGNKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEVDKIPDTVISR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ N++ + L E+ I + + + GS + I Sbjct: 170 CQRYDFLPLNMNDIIEMLKMVAEKENIKIDEESLKLIYRKSEGSARDSFSIFEQVASNFS 229 Query: 237 SSYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 ID+ + + + + + + D+ DF+ + I Sbjct: 230 GEEIDIEKTQTALGVIPDKLLNEFLTVVSNGDKIGGIDFVDKLWEDGIL 278 >gi|312792713|ref|YP_004025636.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179853|gb|ADQ40023.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor kristjanssonii 177R1B] Length = 534 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 28/319 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + E I K L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EVCRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 110 VRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL----KEICKSAKA 288 +L+ + E + + I + ++ K+ E + E Sbjct: 230 HITYKFVANLLGVTSTEIVKEFIASIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLR 289 Query: 289 AALSGQLEEADQIAQIYFS 307 +AL +L D + + S Sbjct: 290 SALILRLGAKDVLVDMLES 308 >gi|86605279|ref|YP_474042.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-3-3Ab] gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-3-3Ab] Length = 692 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 129/335 (38%), Gaps = 44/335 (13%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G + + L+ GR+ A LF G +G GK + A + Sbjct: 13 KYRPQRFAEVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P ++C+ + + + + D + + + N VD IR + Sbjct: 73 TPDPCQVCSQ------CRAITAGSSLDVIEIDAASNT---------GVDNIRELIERAQF 117 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 118 APVNSRYKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRF 177 Query: 185 KFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDKII 236 F + +++ L Q I V A G + A ++L + Sbjct: 178 DFRRIPLDDMVAHLGQIAAQEGIPIAPEALHLVAQLAQGGLRDAERLLDQLSLLEGSITP 237 Query: 237 SSYIDLI-HIPRQEY----------ALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 + DL+ IP ++ +Q + +LL + ++ +L+ + Sbjct: 238 EAVWDLVGGIPERQLLDLTDALLAQDVQAVLAQTRQLLERGREPLV------VLQSLVVF 291 Query: 286 AKAAALSGQLEEADQIAQI----YFSLVKRVHAFS 316 + L+ + Q+A + + +L +R +S Sbjct: 292 YRDLLLAKTAPQQRQLAAVTDPTWAALQQRAPRYS 326 >gi|322516676|ref|ZP_08069588.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus vestibularis ATCC 49124] gi|322124793|gb|EFX96225.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus vestibularis ATCC 49124] Length = 550 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + + + LE+ + D + A G + A+ IL Sbjct: 170 QRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSILD-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + Q +A+E+ A D + + + A + L + Sbjct: 222 ---QALSLSPDNHV---SQAVAEEITGSIGLTALDSFVANVRNQETTQA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|78777754|ref|YP_394069.1| DNA polymerase III subunits gamma and tau [Sulfurimonas denitrificans DSM 1251] gi|78498294|gb|ABB44834.1| DNA polymerase III, tau subunit [Sulfurimonas denitrificans DSM 1251] Length = 543 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 143/359 (39%), Gaps = 35/359 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P+ L G E I + LS + R+ HA LF G +G GK + ++ ++ Sbjct: 7 VLARKYRPINFDELIGQESISQTLSLALDANRLSHAYLFSGLRGSGKTSTARIFSKALIC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P +C + D + + + + K +D+IR + Sbjct: 67 EKGISHKPCGVCQN------CILALENRHIDIVEMDGASSRK---------IDDIRDLIE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 T +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 112 QTKYKPATARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F S++ N + L + I D + + GS+ + +L D+ I Sbjct: 172 TQHFRFKSIATNKIADHLSHILNLEGIKYESEALDIIARSGSGSLRDTLTLL----DQAI 227 Query: 237 ---SSYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAF-------DFLIEFILKEICK 284 +Y+D+ + + + +Q++ + + ++D D+ + +L E+ Sbjct: 228 IYSKNYVDVRTVTDMLGLVDPKFLQELFNAVFAKDYAKLIQHVKSLEDYEAQMVLDELIA 287 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 K + + + +F ++ N D ++ + K E + D Sbjct: 288 FLKERMYASDALYSTLVLDRFFRILSDAKYLFSINADGSFVLSLIFFKMVEALRIKEVD 346 >gi|148255488|ref|YP_001240073.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. BTAi1] gi|146407661|gb|ABQ36167.1| DNA polymerase III, delta prime subunit [Bradyrhizobium sp. BTAi1] Length = 346 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 118/337 (35%), Positives = 175/337 (51%), Gaps = 9/337 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P LFGH D E L Y SGRM HA L G QGIGKATL +R A VL + D S Sbjct: 14 HPRETTALFGHRDAEAALLAAYRSGRMAHAWLIGGPQGIGKATLAYRMARFVLTHRDPSS 73 Query: 67 APVRMC---NPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 VR + +P + +AS A L L S N K G RTVITVDE R F Sbjct: 74 PAVRAATSLHVEPDDHVARLIASEAHGGLLTLERSANDK-GVLRTVITVDETRETISFFG 132 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC Sbjct: 133 STAAVEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIKSRCRR 192 Query: 184 IKFNSLSENNLYKALEQLKIMGW-DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + +LS +++ A + M D A+ GSVAR + ++ D ++ S L Sbjct: 193 LALRALSTDDVISAAAEATGMAAGDPALRDAARASEGSVARTLMLMGGDGLQLQSRTTAL 252 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +PR + ++ + D L + D+ +A ++ I + + + + + + +L ++ Sbjct: 253 LASLPRIDP--GELHALGDALGTSDR-VALASFLDSIERWVAERLRTSDPNAELPRLARL 309 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A+++ +V+ YNL+R+ ++F + E Sbjct: 310 AEVWEKIVRAARDTESYNLERKPLVFSVFGMLAEATR 346 >gi|327539583|gb|EGF26192.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica WH47] Length = 651 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 28/327 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G + + + L + R+ HA LF G +G+GK + +A L Sbjct: 14 VVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKA-LN 72 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +PD A NPD S + + S D + + + N +DEIR +R Sbjct: 73 HPDGPTA-----NPDNESDVAQAIDSGEDVDVIEIDGASNR---------GIDEIRSLRA 118 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 119 NVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 178 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + + + L ++ D + + A GS+ + +L ++++ Sbjct: 179 CQRFDFAPVESDKIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLL----EQVL 234 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S D +H Q++ ++A+ + +D A + E I + A + Sbjct: 235 SFSDGHLTADHVHTMLGTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVDAGRLAEQM 294 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMY 318 G + +A + + R A SM+ Sbjct: 295 LGYFRDLMAVAVGCEASLMRYAAASMH 321 >gi|312877704|ref|ZP_07737658.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor lactoaceticus 6A] gi|311795505|gb|EFR11880.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor lactoaceticus 6A] Length = 536 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 28/319 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + E I K L ++ HA +F G +G GK T + V Sbjct: 7 LYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 67 NPKDGNPCNEC------EVCRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 112 VRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 172 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDE 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL----KEICKSAKA 288 +L+ + E + + I + ++ K+ E + E Sbjct: 232 HITYKFVANLLGVTSTEIVKEFIASIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLR 291 Query: 289 AALSGQLEEADQIAQIYFS 307 +AL +L D + + S Sbjct: 292 SALILRLGAKDVLVDMLES 310 >gi|289450158|ref|YP_003475319.1| DNA polymerase III subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184705|gb|ADC91130.1| DNA polymerase III, subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 612 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 115/282 (40%), Gaps = 20/282 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L Q R+ HA LF G +G GK +L +A + Sbjct: 6 LYRIYRPRTFAEVVGQKHVITALQQAIRQDRIAHAYLFCGTRGTGKTSLAKIFARAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C P + +L D + + + N +VD IRRI Sbjct: 66 NGHDAEPCNAC------PICRGSLDGSLLDIIEMDAASNN---------SVDNIRRICDE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ T ++V +ID V ++ A NALLK+LEEPP+ ++FIL + I +TI SRC Sbjct: 111 VAFAPTTCKYKVYIIDEVHMLSVGAFNALLKTLEEPPEHIVFILATTDPQRIPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +LS + L + I DS + + A G++ AI +L + Sbjct: 171 QRYDLRALSLTEIASRLRLIATENDIKADDSAIEALAGLAKGAMRDAISLLDQCRVSFST 230 Query: 238 SY-IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 ++ D + + + D L + D L E + Sbjct: 231 TFSRDDVFRLVGRSGDAETAMLTDRLFAGDPAGMIKILDEMV 272 >gi|325105012|ref|YP_004274666.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] Length = 605 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 29/288 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + + G I L S ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFESVVGQLHITNTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +C + C+ F+ +F L + N +VD+IR + Sbjct: 66 QNLTAQGEACGIC--ESCNSFL----HGNSFNFHELDAASNN---------SVDDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++++A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRIPPQGGKYKVYIIDEVHMLSQSAFNAFLKTLEEPPAYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC--- 232 RC FN + ++ L ++ +I + + A G + A+ + Sbjct: 171 RCQIFDFNRIKVEDMAGHLSKIATREEITFDNDGLHLIAQKADGGLRDALSMFDQIASFS 230 Query: 233 --DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + ID ++I +Y ++ D L +D E + Sbjct: 231 NRNISYQAVIDNLNILDYDYYF----KLTDFLNQEDTASTLLLFNEIL 274 >gi|270292578|ref|ZP_06198789.1| DNA polymerase III [Streptococcus sp. M143] gi|270278557|gb|EFA24403.1| DNA polymerase III [Streptococcus sp. M143] Length = 552 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDIKEHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +++ ++ + I +L + L QD A D L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALDSL 268 >gi|183600059|ref|ZP_02961552.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827] gi|188022344|gb|EDU60384.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827] Length = 643 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 130/324 (40%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 5 VLARKWRPQKFSDVVGQQHVLTALANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGKCTN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + + + LE + I R + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKALDVSQISEQLEHILTAENIEHDTRARQLISRAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + Q+ L + + L+ + + AA G Sbjct: 226 A-------MGQGKVTADIVSQMLGTLDDEQPLAIIEALVRADGIAVMSEVEHAASRG--- 275 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + ++ +H +M L Sbjct: 276 --ADWENLLVEILSLLHRIAMIQL 297 >gi|315639690|ref|ZP_07894830.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus DSM 15952] gi|315484651|gb|EFU75107.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus DSM 15952] Length = 573 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 111/286 (38%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I + L ++ HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFDEIVGQQAITQTLKNAIVQQQISHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + D + + + N V+EIR IR Sbjct: 66 HSVDGEPCNECD------MCLSITKGSQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTQAKYKVYIIDEVHMLSTGAFNALLKTLEEPKKNVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + LE++ + + + AA G + A+ IL D+ I+ Sbjct: 171 QRFDFKRILPQDIVQHLEEILQEMNLSYEEDALAVIARAAEGGMRDALSIL----DQAIA 226 Query: 238 SYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I + M ++ L+ D A + L + Sbjct: 227 FSDGTITTQDAFDVTGSLTSELMDRLLLACLTHDATGALEQLDGLL 272 >gi|168485812|ref|ZP_02710320.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1087-00] gi|183570972|gb|EDT91500.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1087-00] Length = 551 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAINCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107] gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107] Length = 636 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 111/304 (36%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 + P +L G E I L S R+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCQNSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ + +AS D + + + N VD IR + Sbjct: 71 GPTPEPCGTCD------LCRTIASGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L + L EQ I V + G + A +L Sbjct: 176 RFDFRRIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + Q++ +A + S + + + + + L+G L + Sbjct: 236 EANAVWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGSVLQGLAGVLRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|257438605|ref|ZP_05614360.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii A2-165] gi|257198949|gb|EEU97233.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii A2-165] Length = 625 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 19/263 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + I L +GR+ HA LF G +G GK T +A V Sbjct: 12 LYRKWRPQRFEDVVAQRGIVTALRNQIATGRVGHAYLFTGVRGTGKTTCAKIFAKAVNCL 71 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + ++ D + + + N VD+IR +R Sbjct: 72 HPQNGDPCGEC------EICRGIDNGSILDVVEMDAASNN---------GVDDIRDLRDE 116 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + +++V +ID V ++ A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 117 TAYTPSACHYKVYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRC 176 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ + +E Q + + + A G++ A+ IL Sbjct: 177 QRYDFTRIGPEDIAQRVEYIAGQEGLELSGEGAELISRLADGAMRDALSILDTCAGVTAK 236 Query: 238 SYIDLIHIPRQEYALQKMQQIAD 260 D++ + +I+D Sbjct: 237 IDADVVRRMAGVTDRSYLFRISD 259 >gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum Pei191] gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum Pei191] Length = 627 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 28/273 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + + G E I K L+ GR+ HA LF G +G GK T +A + Sbjct: 14 LSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKALNCT 73 Query: 62 PDFSK---APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR- 117 + +K +P C P ++A+ + D L L + N + VD+IR Sbjct: 74 GNGNKPAASPCGKC------PQCIEIANGSDMDVLELDAASNTQ---------VDKIREA 118 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I ++L A +++ ++D V ++ ++ NALLK++EEPP V+FIL + + +TI Sbjct: 119 IIDTVALAATRDRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATI 178 Query: 178 RSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--- 230 SRC + +F +++ ++ L ++ I + A G++ A+ IL Sbjct: 179 SSRCQTFRFRPITQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIA 238 Query: 231 --DCDKIISSYIDLIHIPRQEYALQKMQQIADE 261 D ID++ + ++ ++ + + Sbjct: 239 YSDGSITEELVIDMLGLMPEDILKAAVKAVLKK 271 >gi|241662731|ref|YP_002981091.1| DNA polymerase III subunits gamma and tau [Ralstonia pickettii 12D] gi|240864758|gb|ACS62419.1| DNA polymerase III, subunits gamma and tau [Ralstonia pickettii 12D] Length = 733 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 139/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 65 VGADGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAIYAPTSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLAAAAQGSMRDALSLTDQA 229 Query: 228 -LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + D ++ ++ Q Y ++ + +ADE + +I A Sbjct: 230 IAYSAGDVSEAAVRGMLGAIDQSYLVRLLDALADENGAALVEIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD + ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDVRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|312862742|ref|ZP_07722982.1| DNA polymerase III, subunit gamma and tau [Streptococcus vestibularis F0396] gi|311101602|gb|EFQ59805.1| DNA polymerase III, subunit gamma and tau [Streptococcus vestibularis F0396] Length = 550 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 126/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ + + + LE+ + D + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Q +A+E+ A D + + + A + L + Sbjct: 226 ----------LSPDNHVSQAVAEEITGSIGLTALDSFVANVRNQETTQA-LSNLETLFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L++ Sbjct: 275 GKSMSRFATDLLEYFRDL 292 >gi|288904969|ref|YP_003430191.1| DNA polymerase III, gamma and tau subunits [Streptococcus gallolyticus UCN34] gi|288731695|emb|CBI13256.1| DNA polymerase III, gamma and tau subunits [Streptococcus gallolyticus UCN34] Length = 559 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 123/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPTTILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + +I + + A G + A+ IL Sbjct: 170 QRFEFKAIKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +++ L IA+E+ A D + +L A A L + Sbjct: 230 NHVSL--------------AIAEEITGSISMTALDDFVANVLANQTSQA-LANLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 + + L+ + Sbjct: 275 GKSMNRFATDLLNYLRDL 292 >gi|308233501|ref|ZP_07664238.1| DNA polymerase III, subunits gamma and tau [Atopobium vaginae DSM 15829] gi|328943419|ref|ZP_08240884.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM 15829] gi|327491388|gb|EGF23162.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM 15829] Length = 742 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 29/286 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P Q + G + L ++ HA LF G +G GK T+ +A +L Sbjct: 4 LYTKYRPAVFQDVVGQTHVVSTLQNAVLEHKIGHAYLFCGPRGTGKTTMARLFAKALLCT 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P +C K +A D L + VD +R I Sbjct: 64 SPQNGLPCGVC------ETCKNIAQGIHPDVFELDAASRT---------GVDNVREEIID 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +++ +ID V + +A NALLK+LEEPP V+FIL + IL+TI SR Sbjct: 109 RVNYAPLKGAYKIYIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSR 168 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CD 233 + F+ + + ++ L++ D + A G + A+ L Sbjct: 169 VMRFDFHRIKSDEMFVHLQKVCTLEHFSADDEALKLIVEHAQGGMRDALSSLEQISVFGK 228 Query: 234 KIISSYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 +IS + D++ Q + + L +D K F+ + Sbjct: 229 GVISKRLVEDMLGATSQT----NLTALVQSLALRDTKRLFEEIASL 270 >gi|262370428|ref|ZP_06063754.1| DNA polymerase III [Acinetobacter johnsonii SH046] gi|262314770|gb|EEY95811.1| DNA polymerase III [Acinetobacter johnsonii SH046] Length = 698 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 141/352 (40%), Gaps = 38/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------PTCTAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL L+ + + + L + I + +A GS+ A+ + + Y Sbjct: 169 CLQFTLRPLAVDEITEHLGNILNKENIQAEQDAIWQIAESAQGSLRDALSLTDQAIAYGQ 228 Query: 233 DKII-SSYIDLIHIPRQEYALQKMQQI-------ADELLSQDQKIAFDFLIEFILKEICK 284 I +++ + + + I ELL Q ++ A D + +L ++ Sbjct: 229 GAIQHQDVKEMLGLIDRTIIYDLILAIHQNQKQRVSELLMQFRQQALD--VSLVLDQLIS 286 Query: 285 SAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + AL L E A+I +++ + +L Q+ + + K R Sbjct: 287 TLHELALLQYLPELSLKYSAEINKKIMQLSQQIAAQDL---QLYYQIACKGR 335 >gi|312135789|ref|YP_004003127.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor owensensis OL] gi|311775840|gb|ADQ05327.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor owensensis OL] Length = 534 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 24/287 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + + I K L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ K + D L + + N +V+++R+IR Sbjct: 65 NLKDGNPCNECD------VCKSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP+ LFIL + + +TI SRC Sbjct: 110 VRYPPSVCRKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQIENISIDDNALYLIAQKAEGALRDALTILERCMNTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +L+ + E + + I + ++ K+ E + Sbjct: 230 HITYKFVANLLGVTSTEIVKEFIAAIVENDSNKGLKVINRLWDEGMD 276 >gi|290968136|ref|ZP_06559681.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp. type_1 str. 28L] gi|290781811|gb|EFD94394.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp. type_1 str. 28L] Length = 565 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I + L + ++ HA LF G +G GK + +A V Sbjct: 6 LYRKWRPKTFEDVVGQRQITETLQKAIIMDKVAHAYLFSGPRGTGKTSTAKIFARAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D + + + N ++++IR +R Sbjct: 66 QGTKGHPCNTC------EICRHIMRGESLDVVEIDAASNR---------SIEDIRTLRET 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++ +ID V + A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VKFMPAEGKKKIYIIDEVHMLTIEAFNALLKTLEEPPAHVIFILATTEPERIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 +F L+ +++ L Q + + + A G + A+ +L Sbjct: 171 QRYEFRRLTSDDIAARLLYVAAQEHLSLAADAARVLAVKAEGGMRDALSMLDQ 223 >gi|168484747|ref|ZP_02709692.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1873-00] gi|172042059|gb|EDT50105.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC1873-00] Length = 551 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYTPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|94988789|ref|YP_596890.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes MGAS9429] gi|94542297|gb|ABF32346.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS9429] Length = 561 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L + + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQA------ 223 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 L P + + IA+E+ +A + ++ +E A AAL + Sbjct: 224 ----LSLSPDNQVTI----AIAEEITGSISILALGDYVRYVSQEQATQA-LAALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] Length = 663 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 114/332 (34%), Gaps = 34/332 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNP 62 + P L G E I L+ ++ A LF G +G GK + A + LQ+ Sbjct: 9 KYRPKSFAELVGQEAIATTLTNAISLVKVAPAYLFTGPRGTGKTSSARILAKSLNCLQSG 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 HPTPTPCGVCD------ICQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDK 234 F + + K L ++ I V + G + A +L D Sbjct: 174 RFDFRRIQLEAMVKHLSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGDV 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAKAA 289 DL+ ++ +Q IA L IL+ + + Sbjct: 234 SPEQVWDLVGSVSEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDL 293 Query: 290 ALSGQLEEADQIA----QIYFSLVKRVHAFSM 317 ++ + + + LV + Sbjct: 294 LIAKTASSRQDLVSCTQETWQQLVNFATELDI 325 >gi|238919040|ref|YP_002932554.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri 93-146] gi|238868608|gb|ACR68319.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri 93-146] Length = 652 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D L + + K V++ R + Sbjct: 65 ETGITATPCGVCDN------CREIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +L + LE++ + + AA GS+ A+ ++ Sbjct: 170 CLQFHLRALDHEQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLMDQAIAMGQ 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQI--ADELL-------SQDQKIAFDFLIEFILKEI 282 +I + + ++ E L ++ + AD L + + + ++ L+ +L + Sbjct: 230 GQITADTVSQMLGTLDDEQPLALIEALTAADGALVMARVEQAAGRGVDWENLLVEMLALL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ Q A + L + +L Q+ + ++ R+ Sbjct: 290 HRVAMLQLLPSALD--SQFAAVEPRLRELARMLPPADL---QLFYQIILNGRK 337 >gi|148993679|ref|ZP_01823126.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP9-BS68] gi|168490300|ref|ZP_02714499.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae SP195] gi|303255298|ref|ZP_07341369.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS455] gi|303260384|ref|ZP_07346353.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP-BS293] gi|303262741|ref|ZP_07348679.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS292] gi|303265030|ref|ZP_07350944.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS397] gi|303267140|ref|ZP_07353009.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS457] gi|303269364|ref|ZP_07355135.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS458] gi|147927759|gb|EDK78782.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP9-BS68] gi|183571341|gb|EDT91869.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae SP195] gi|301801689|emb|CBW34395.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae INV200] gi|302597767|gb|EFL64842.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS455] gi|302636063|gb|EFL66560.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS292] gi|302638419|gb|EFL68885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP-BS293] gi|302641082|gb|EFL71458.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS458] gi|302643348|gb|EFL73626.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS457] gi|302645390|gb|EFL75623.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae BS397] gi|332073196|gb|EGI83675.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA17570] Length = 551 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYTPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|328675333|gb|AEB28008.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida 3523] Length = 546 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQADIKDQLKTVLAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + R ++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 227 FCGGELKQAR-------IKQMLGIIDSEEVYSIINAIIDNDPKAILPAVKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 + D+IA+I+F+ Sbjct: 280 SVLDKIAEIWFA 291 >gi|121607506|ref|YP_995313.1| DNA polymerase III subunits gamma and tau [Verminephrobacter eiseniae EF01-2] gi|121552146|gb|ABM56295.1| DNA polymerase III, subunits gamma and tau [Verminephrobacter eiseniae EF01-2] Length = 614 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 123/317 (38%), Gaps = 31/317 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFAEMVGQEHVVQALSNALTRQRLHHAYLFTGTRGVGKTTVARILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGIC------PACSDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ +L + L ++ + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPQTVHAHLVQVLAAEQVAAEPQALQLLARAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 + + ++ + + + ++ D L D + + E L + ++ Sbjct: 230 IAFGSGQLQEA---AVRQMLGAVDRSYVFRLIDALAQGDGRAVVETAQELRLNGLSAAST 286 Query: 288 AAALSGQLEEADQIAQI 304 ++ L+ + + Sbjct: 287 LEEMAAVLQRMAVLQAV 303 >gi|124516357|gb|EAY57865.1| DNA polymerase III subunit gamma/tau [Leptospirillum rubarum] Length = 540 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 28/306 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L+ SG++ ALLF G++G+GK T+ A + Sbjct: 7 LARKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAKAINCE 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P + C+ ++ D L + + + V++IR +R Sbjct: 67 KGPTVDPCQECDS------CLEITRGTSPDVLEIDGASHT---------GVEDIRSLREG 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + RV +ID V +++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 112 IRYLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRC 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 +F SL + LE Q + + + + A+ GS+ A+ +L D Sbjct: 172 QHFRFRSLGVPEITAKLENIVRQESLSFPRAILNLIARASGGSLRDALSLLDQIRFLGDT 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + + + +++ D LL + K A + + I A +L+ Sbjct: 232 PRSVEETALFLGMAGGLPE----KKLLDSLLEGNLKNALENGDRMLAMGIDPRATLRSLA 287 Query: 293 GQLEEA 298 ++ + Sbjct: 288 SKVRDL 293 >gi|168575523|ref|ZP_02721459.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae MLV-016] gi|183578398|gb|EDT98926.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae MLV-016] Length = 551 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAINCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHLHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|74316533|ref|YP_314273.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] gi|74056028|gb|AAZ96468.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 33/321 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + LS GR+HHA L G +G+GK TL A + Sbjct: 15 LARKWRPRAFADLRGQEHVVQALSNALTQGRLHHAYLLTGTRGVGKTTLARILAKCLNCE 74 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C+ Q+ + D L L + N VD +R + Sbjct: 75 SGVSATPCGTCSA------CTQIDAGRFVDLLELDAASNT---------GVDNMREVLDN 119 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G ++V +ID V +++ A N++LK+LEEPP V FIL + I T+ SRC Sbjct: 120 AQYAPTVGRYKVYIIDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRC 179 Query: 182 LSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 L ++ +L L Q ++ + + + AA GS+ A+ + + Y Sbjct: 180 LQFNLKPMTPALVAGHLGDVLAQERVDAEPAALNLLARAAAGSMRDALSLTDQAIAYGGG 239 Query: 234 KIISSYID-LIHIPRQEYALQKMQQIA----DELLSQ-----DQKIAFDFLIEFILKEIC 283 +I ++ ++ ++ R++Y + +A D L++Q ++ IAFD ++ + + Sbjct: 240 RIEAAAVEAMLGTVRRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDLGNLLT 299 Query: 284 KSAKAAALSGQLEEADQIAQI 304 + A G +E+ + Sbjct: 300 QLALVLHAPGAVEDGADAERT 320 >gi|323697998|ref|ZP_08109910.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. ND132] gi|323457930|gb|EGB13795.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio desulfuricans ND132] Length = 622 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 127/311 (40%), Gaps = 38/311 (12%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + + G + ++ LS+ ++ A LF G +G+GK T+ +A + Sbjct: 9 KYRPQTFEEVAGQQAVKSILSRAAAQDKIAPAYLFSGTRGVGKTTIARIFAKALNCVNAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P +C+ +Q+ + D + + + N +D+ RR++ + Sbjct: 69 TGEPCNVCDH------CRQITAGVAPDVIEIDGASNR---------GIDDARRLKEDIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G ++V +ID + + A NALLK+LEEPP + FI+ + +TI SRC Sbjct: 114 APIDGRYKVFIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEHHKFPATIISRCQHY 173 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDKII- 236 F L + L LE++ + S + GSV ++ +L + ++ Sbjct: 174 TFKMLPQAELVAHLEKIMNLEGLKYEPSALSIIAKRGAGSVRDSMSLLGQALAMGEDVLR 233 Query: 237 -SSYIDLIHIPRQEYALQKMQQI-ADELLS--------QDQKIAFDFLIEFILK-----E 281 + + + Q+ M+ + A +L++ DQ + F + + Sbjct: 234 EADVRGFLGLAGQDVFFGLMESMHARDLVAVGHVLRQVLDQGLDLGFFLRELTSCWRNMF 293 Query: 282 ICKSAKAAALS 292 + + A AAL Sbjct: 294 LLRQAGEAALP 304 >gi|225861242|ref|YP_002742751.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae Taiwan19F-14] gi|298229159|ref|ZP_06962840.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255733|ref|ZP_06979319.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503129|ref|YP_003725069.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|225728151|gb|ACO24002.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae Taiwan19F-14] gi|298238724|gb|ADI69855.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 551 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTTISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO] gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO] Length = 400 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 35/322 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + + G + + + L S + HA LF G +G GK + +A + Sbjct: 6 LYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N V+EIR IR Sbjct: 66 NSKDGEPCNEC------EMCRSITAGTQEDVIEIDAASNN---------GVEEIRFIRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 111 ANYAPTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ ++ + LE + I + + + +A G + A+ IL D+ IS Sbjct: 171 QRFDFKRINTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSIL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I + + A+Q + DE++ +L + KE+ ++ + L+ L Sbjct: 227 FSEGTITL---DDAMQVTGSLTDEMMD-------SYLSACVKKEVPEALET--LNQILAA 274 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + + +++ MY Sbjct: 275 GKESRRFLEDMLQYCRDLLMYQ 296 >gi|238791473|ref|ZP_04635111.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909] gi|238729089|gb|EEQ20605.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909] Length = 658 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 136/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 CL + + LE++ +I + AA GS+ A+ + D Sbjct: 170 CLQFHLKVIDVEVIRGQLEKILLAEQISSDARALQLLARAADGSMRDALSLTDQAVAMGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 230 GHVTTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQVEQAASRGVDWENLLVETLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ A + L + ++ Q+ + +L R+ Sbjct: 290 HRIAMVQLLPSMLDN--HYATVEPRLRELARTLPPTDI---QLYYQILLMGRK 337 >gi|269467848|gb|EEZ79591.1| DNA polymerase III, gamma/tau subunit [uncultured SUP05 cluster bacterium] Length = 528 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 116/286 (40%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G K L + +HHA LF G +G+GK T+ +A + Sbjct: 7 VLARKYRPHTFSEMVGQTHTVKTLINALDADSLHHAFLFTGTRGVGKTTIARIFAKSINC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P ++ D + L + + VD +R I Sbjct: 67 EAGVSSKPCGKC------PTCIEIDKGQSVDLIELDAASHT---------GVDNMRDILE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V +++++ NALLK+LEEPP+ + F+L + + T+ SR Sbjct: 112 NAQYMPTKNRYKIYLIDEVHMLSKSSFNALLKTLEEPPEHIKFLLATTDPQKLPVTVLSR 171 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + L E K+ + + YGS+ A+ +L D+ I Sbjct: 172 CLQFTLQKLTHEEILGQLKFIMEAEKLKYEELALSQIADFGYGSMRDALSLL----DQSI 227 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEF 277 + + + + L + +A L +QD + +F+ + Sbjct: 228 AYGNGSVMVKDIKAMLGLVHHDDIVTLATHLFNQDAEAVINFIKDL 273 >gi|309782346|ref|ZP_07677072.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] gi|308918882|gb|EFP64553.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] Length = 731 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 S P +C ++ + D++ + + N VDE+ Sbjct: 65 VGADGQGGISAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ +G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAIYAPTSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLAAAAQGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE + +I A Sbjct: 230 IAYSAGEVSEAAVRGMLGAIDQSYLVRLLDALADENGAALVEIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD + ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDVRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 559 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 128/318 (40%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L++ + + + A G + A+ IL Sbjct: 170 QRFEFKAIKQRAIREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILD-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + Q IA+E+ +A D ++ +++ A AL + Sbjct: 222 ---QALSLSPDD---QVTMAIAEEITGSISMVALDDYVQHLMENQATQA-LQALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|325977937|ref|YP_004287653.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177865|emb|CBZ47909.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 559 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 123/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVIFILATTELHKIPTTILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + L + +I + + A G + A+ IL Sbjct: 170 QRFEFKAIKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +++ L IA+E+ A D + +L A A L + Sbjct: 230 NHVSL--------------AIAEEITGSISMTALDDFVANVLANQTSQA-LANLETIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 + + L+ + Sbjct: 275 GKSMNRFATDLLNYLRDL 292 >gi|312621630|ref|YP_004023243.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor kronotskyensis 2002] gi|312202097|gb|ADQ45424.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor kronotskyensis 2002] Length = 534 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 126/319 (39%), Gaps = 28/319 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + E I + L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EICRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP+ LFIL + + +TI SRC Sbjct: 110 VRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL----KEICKSAKA 288 +L+ + E + + I + ++ K+ E + E Sbjct: 230 HITYKFVANLLGVTSTEIVKEYIAAIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLR 289 Query: 289 AALSGQLEEADQIAQIYFS 307 +AL +L D + + S Sbjct: 290 SALILRLGAKDVLVDMLES 308 >gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis KC583] gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella bacilliformis KC583] Length = 634 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 129/350 (36%), Gaps = 40/350 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 9 VLARKYRPQNFSDLIGQETMVRTLTNAFEAGRIAQAWILTGIRGVGKTTTARILARALNY 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + N Q+ D + + + + +D+IR I Sbjct: 69 ETKDINKPTTVFNTL--GEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 118 QIRYCPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 177 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L + K+ + + AA GSV A+ I D+ I Sbjct: 178 CQRFDLRRVESSALVAHLHKIAQHEKVEVQEQALSIIARAAEGSVRDALSIF----DQAI 233 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + I A++ M +A DQ D ++++K SA S Sbjct: 234 AHSNGKI----NATAVRTMLGLA------DQARIIDLF-DYVMKGDIVSALHELRSQYDA 282 Query: 297 EADQIAQIYFSLVKRVHAFSMYN--LDRRQMIFHLLSKARECNDLYFRDF 344 AD + + + +N + R ++I D R Sbjct: 283 GADPFS--------VLAELANFNHLVTRLRLIPETTEDLSLTEDERLRSL 324 >gi|153006600|ref|YP_001380925.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. Fw109-5] gi|152030173|gb|ABS27941.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. Fw109-5] Length = 606 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 105/263 (39%), Gaps = 23/263 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C P ++A D + + + N VD +R I Sbjct: 65 EKGPTAEPCGACTP------CVEIAEGRAVDVVEIDAASNN---------GVDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V ++ A NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 AVKYRPARDRYKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ + L E + V A G + A+ +L D++ Sbjct: 170 CQRFDFRRLTLQQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLL----DQVR 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIA 259 ++ D AL + A Sbjct: 226 AAAGDAPDEAAVAEALGAVDAAA 248 >gi|238759223|ref|ZP_04620390.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236] gi|238702510|gb|EEP95060.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236] Length = 655 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 35/336 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA L G +G+GK T+ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLLSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + AP +C +++ D + + + K V++ R + Sbjct: 65 ETGITAAPCGVCAN------CREIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL ++ + LE++ +I + AA GS+ A+ + Sbjct: 170 CLQFHLKAIDVEQIRALLEKILQAEQITSDARALQLLARAADGSMRDALSLADQAIAMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 S+ ++ E L ++ + ++ + I ++ L+ L + Sbjct: 230 GQITTSTVSQMLGSLDDEQPLAIIEALVSADGAKVMAQVEQAASRGIDWENLLVETLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + A L L+ A I L + Sbjct: 290 HRIAMVQLLPSMLDN--HYAAIEPRLRELARTLPPV 323 >gi|330993788|ref|ZP_08317720.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1] gi|329759056|gb|EGG75568.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1] Length = 690 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 115/291 (39%), Gaps = 21/291 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L + GR+ HA + G +G+GK T A + Sbjct: 64 VLARKYRPTTFDDLIGQETTVRILRNAFAQGRVAHAFMLTGVRGVGKTTTARIIARALNC 123 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +P P + + D L + + VD++R I Sbjct: 124 TGPDGRGGP--TADPCGVCPNCVAILADRHPDVLEIDAASRT---------GVDDVREII 172 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G +V +ID V ++RNA NALLK+LEEPP +V FI + +L T+ S Sbjct: 173 EATRFRPLQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVLVTVLS 232 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + L ++ + + AA GSV + +L D+ Sbjct: 233 RCQTFALRRVPQVELAAHFDRVAQAEHVRFSADALALIARAADGSVRDGLSLL----DQA 288 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 I+ L + A + +A L D+ + FD L + ++ Sbjct: 289 IAQ-GTLDGEGGADAAPIGVDLVAGMLGLADRGLVFDLLDAVLEGRADRAL 338 >gi|268679083|ref|YP_003303514.1| DNA polymerase III subunits gamma and tau [Sulfurospirillum deleyianum DSM 6946] gi|268617114|gb|ACZ11479.1| DNA polymerase III, subunits gamma and tau [Sulfurospirillum deleyianum DSM 6946] Length = 546 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 134/348 (38%), Gaps = 27/348 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P +L G E I + LS R+ HA LF G +G GK + +A ++ Sbjct: 5 VLALKYRPSSFDKLIGQEAITQTLSSALNQNRLSHAYLFSGLRGSGKTSTARIFAKALVC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + D + + + N +D+IR + Sbjct: 65 EQGPNATPCDVC------EHCLSANENRHIDIIEMDAASNR---------GIDDIRELIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ +++ +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 STKYKPSSARFKIFIIDEVHMLTTQAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH------- 229 +F + ++++ L + KI + + A GS+ + +L Sbjct: 170 VQHFRFKQIKQSDVINHLCHILNLEKIEYEKEALEMLSRAGNGSLRDTLTLLDQAIIYSK 229 Query: 230 -YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 Y + +++ + L+ + E + L K + E ++ E+ K Sbjct: 230 GYITPEHVATMLGLLDPKQLETLFSAILNGNKTELLGLIKTLESYECEVVMDELIAYLKN 289 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A + + + +F ++ + N + ++ +L K E Sbjct: 290 AFFEQDRRFSTLLYERFFKILSEAKSLLYINANNGFILSLVLFKMVEA 337 >gi|238899119|ref|YP_002924801.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466879|gb|ACQ68653.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 640 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 29/311 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E + L GR+HHA L G +G+GK ++ A + Sbjct: 5 VFARKWRPQTFSEVVGQEHVLTALVNSLSLGRIHHAYLLSGTRGVGKTSIARLIAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + D + + + K V++ R + Sbjct: 65 TSGITATPCGKC------IHCQGIEQGHFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NLPYSPTQGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTEPKKLPVTIISR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +L+ N L K L KI + AA GS+ A+ + Sbjct: 170 CLQFHLKALNALVILNQLEKILAAEKIDSDTEALKLLAKAASGSMRDALSLTDQAVAIGS 229 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELLSQ-----DQKIAFDFLIEFILKEICKSA 286 K+ + + +++ I +L ++ +A + +Q A E +L E+ Sbjct: 230 GKVTTQIVREMLTILDDGQSLSIIEALAKADAEKIMFEIEQTAAVGKDWENLLIEMLNLF 289 Query: 287 KAAALSGQLEE 297 A+ L E Sbjct: 290 HRIAIKQLLPE 300 >gi|228949834|ref|ZP_04112044.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809892|gb|EEM56303.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 553 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 22/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I++ + + HA +F G +G GK T+ A + Sbjct: 10 LYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCE 69 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ K + ++ D L + + N V++IR IR Sbjct: 70 NLNNEGEPCNECSQ------CKAIRGNSHADVLEIDAASNN---------GVEQIREIRE 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ TG ++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 QVAYAPGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPTTIISR 174 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + ++ + L + ++ + + + A G + A+ ++ Sbjct: 175 CQRFDFRRIGPRDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFAT 234 Query: 237 SSYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + I D + +++K++ +LL + + + + IL Sbjct: 235 NETITKDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVIL 279 >gi|119897248|ref|YP_932461.1| DNA polymerase III subunit tau [Azoarcus sp. BH72] gi|119669661|emb|CAL93574.1| DNA polymerase III subunit Tau [Azoarcus sp. BH72] Length = 662 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 19/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGTLVGQEHVVRALSHALATGRLHHAYLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + + D++ + + N V+++ + Sbjct: 65 ETGVTAEPCGQC------EACRAIDADRFPDYVEMDAASNR---------GVEDMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 CL + + ++ + L++ + + AA GS+ A+ +L Sbjct: 170 CLQFNLKQMPQGHIVEHLDRVLTAEAVPFEPPALRHIAKAANGSMRDALSLLDQA 224 >gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 559 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 128/318 (40%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L++ + + + A G + A+ IL Sbjct: 170 QRFEFKAIKQRAIREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILD-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + Q IA+E+ +A D ++ +++ A AL + Sbjct: 222 ---QALSLSPDD---QVTMAIAEEITGSISMVALDDYVQHLMENQATQA-LQALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLAYLRDL 292 >gi|229823583|ref|ZP_04449652.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271] gi|229787027|gb|EEP23141.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271] Length = 655 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 120/312 (38%), Gaps = 35/312 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G I + L + ++ HA LF G +G GK + A V Sbjct: 6 LYRVWRPQSFDELVGQPLIAETLKNAVKNQQLSHAYLFTGPRGTGKTSAAKILAKAVNCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + L D + + + N V+EIR +R Sbjct: 66 HQTDGNPCNQC------ELCQAITAGQLSDVIEIDAASNN---------GVEEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V + A NALLK+LEEPP +VLFIL + I +TI SR Sbjct: 111 VRYAPSQATYKVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S+ +L LEQ I + AA G + ++ +L Sbjct: 171 QRFDFGRISQADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + R +Q ++ L Q + D+L ++ K+ L L+E Sbjct: 223 ---QALSYNRSAVTVQSALEVTGSL---SQLVYIDYLTALQAQDGPKALSI--LQASLQE 274 Query: 298 ADQIAQIYFSLV 309 Q + L+ Sbjct: 275 GKQANRFVEELI 286 >gi|254361787|ref|ZP_04977922.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia haemolytica PHL213] gi|153093322|gb|EDN74318.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia haemolytica PHL213] Length = 685 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 71/360 (19%), Positives = 141/360 (39%), Gaps = 51/360 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+HHA LF G +G+GK ++ +A + Sbjct: 5 VLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K + D + + + K V++ R + Sbjct: 65 VNGITAEPCGECAN------CKAIEEGHFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYD 231 C+ +L ++ + + LE + I + + AA GS+ ++ + + Sbjct: 170 CMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSLSLTDQAIAMSN 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + ++ ++ + L+ +Q A D + A + + K + Sbjct: 230 ANITLAIVSQMLGLIDDNQPLELVQATAQA----DGEKAMAIIEQIAAKGV--------- 276 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQ----MIFHLLSKARECNDLYFRDFYAI 347 Q+ + + +H +M L + + H L+K D+ F FY + Sbjct: 277 --------DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQF--FYQL 326 >gi|332109983|gb|EGJ10611.1| DNA polymerase III subunits gamma and tau [Rubrivivax benzoatilyticus JA2] Length = 378 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 148/368 (40%), Gaps = 40/368 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G E + + LS R+HHA LF G +GIGK T+ A + Sbjct: 5 VLARKYRPRSFDQMVGQEHVVRALSNALEQQRLHHAYLFTGTRGIGKTTVSRILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P ++ + D++ L + N ++DEIR + Sbjct: 65 T-GPDGTGGITAHPCGVCSACTEIDADRYIDYIELDAASNR---------SIDEIRDLIE 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V MID + ++A NALLK+LEEPP+ + F+L + +L T+ SR Sbjct: 115 RAAYKPGIGRFKVFMIDEAHQLTKDAFNALLKTLEEPPEYLKFVLATTDPEKMLPTVLSR 174 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL ++ +++ L++ + + + AA GS+ A+ + + Y Sbjct: 175 CLQFNLRPMAPQTVHEHLQKVLAAEHVPHDEPSLRLLSRAARGSMRDALSLTDQAIAYGG 234 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------------IEFIL 279 ++ + ++ +++ + L ++D + +E + Sbjct: 235 GRVDEA---VVRAMLGSVDRGHARRLVEALAARDGAAVLATVDALRAMGLSASATLEELA 291 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + + A A+ G L+ D + +L + D Q+++ + R L Sbjct: 292 SLLQQMAVEQAVPGALDAQDPDTEDARALAGVLP------PDETQLLYSIALHGRSELAL 345 Query: 340 YFRDFYAI 347 ++ A+ Sbjct: 346 MSDEYGAL 353 >gi|320333407|ref|YP_004170118.1| DNA polymerase III subunits gamma and tau [Deinococcus maricopensis DSM 21211] gi|319754696|gb|ADV66453.1| DNA polymerase III, subunits gamma and tau [Deinococcus maricopensis DSM 21211] Length = 772 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 20/296 (6%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P++ + G E ++ L +GR+ HA LF G +G+GK T A Sbjct: 9 RPIHWDEVVGQEHVKDVLRAALEAGRVGHAYLFSGPRGVGKTTTARLIAMTANCT-GPDP 67 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C P ++ + + D L + + N +VD++R +R + L A Sbjct: 68 KPCGTC------PSCLEVRAGSHPDVLEIDAASNN---------SVDDVRELREKVGLAA 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G ++ ++D M+R A NALLK+LEEPP V+FIL + +L TI SRC +F Sbjct: 113 MRGGKKIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKVLPTIMSRCQHYRF 172 Query: 187 NSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L++ + L E+ + + A G++ +L + Sbjct: 173 RRLTDTEIAGKLTGIAEREGVRAQPEALALIGRLADGAMRDGESLLERMLAAGTNVTRAG 232 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + ++++ +A L+ D A L L +A Sbjct: 233 VEAALGLPPGERVRDMARALVLGDAAGALGEAGRLYRDGFAARTVVEGLVSALRDA 288 >gi|284034966|ref|YP_003384896.1| DNA polymerase III subunits gamma and tau [Spirosoma linguale DSM 74] gi|283814259|gb|ADB36097.1| DNA polymerase III, subunits gamma and tau [Spirosoma linguale DSM 74] Length = 664 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 30/291 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E I L + + A LF G +G+GK T A + Sbjct: 6 VSARKYRPATFDTVVGQEHITTTLKNAIKTNHLASAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 C +A + L + N +V++IR + Sbjct: 66 QNLTAEGEACDACES------CVSFNQNASFNIHELDAASNN---------SVEDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +G +++ +ID V ++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRYPPQSGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---- 231 RC FN + ++ L ++ I D + A G + A+ + + Sbjct: 171 RCQIFDFNRIQPQHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFA 230 Query: 232 CDKII--SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D+II +D +HI +Y ++ D LL+ + + E + K Sbjct: 231 ADRIIRYKEVLDNLHILDYDYYF----KLTDLLLAGKLPQSLLTVDEILRK 277 >gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] Length = 660 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 115/332 (34%), Gaps = 34/332 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVLQNP 62 + P L G E I L+ ++ A LF G +G GK + A + LQ Sbjct: 9 KYRPKSFAELVGQEAIATTLTNAISLVKIAPAYLFTGPRGTGKTSSARILAKSLNCLQTG 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 HPTPTPCGVCDT------CQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDK 234 F + + K L ++ I V + G + A +L + Sbjct: 174 RFDFRRIQLEAMVKHLSKIAYNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGEV 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAKAA 289 DL+ ++ +Q IA + + L IL+ + + Sbjct: 234 SPEQVWDLVGSVSEKDLFALLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDL 293 Query: 290 ALSGQLEEADQIA----QIYFSLVKRVHAFSM 317 ++ + + + LV + Sbjct: 294 LIAKTASSRQDLVSCTQETWQQLVSFAAELDI 325 >gi|255263160|ref|ZP_05342502.1| DNA polymerase III subunit delta' [Thalassiobium sp. R2A62] gi|255105495|gb|EET48169.1| DNA polymerase III subunit delta' [Thalassiobium sp. R2A62] Length = 375 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 163/364 (44%), Gaps = 30/364 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P RL G + Y +GR+HHA + G +G GKATL ++ A +L Sbjct: 12 IEGAPHPRETARLLGQNEAVAEFLDAYATGRLHHAWMITGPKGTGKATLAWKIATFLLAE 71 Query: 62 PDFSKAPVRMCNPDPCS-------PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P P S P + +A+ A L ++N TGK R ITVDE Sbjct: 72 TGDDGGFFGETPPAPTSLDVSPDAPDARLIAAGAHPRLTVLRRAVNKDTGKLRAQITVDE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+++ F ++A G RV ++D D MN NAANALLK LEEPP ILI+H +L Sbjct: 132 VRKLKGFFEMSAADGGRRVAIVDAADEMNVNAANALLKVLEEPPVDATLILIAHQPSRLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC +++ N+L + AL+Q I ++ + A GSV A++++ D Sbjct: 192 PTIRSRCRTLRANTLPPETIAAALDQAGITTNEAP--ALGALAQGSVGEAMRLITMDGLA 249 Query: 235 IISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA----- 288 + I L +PR + + ++AD +D +++ + ++A+A Sbjct: 250 LYGDLIKLFTGLPRVDRTI--ALKLADSAAGVRNVNRYDMILDLFDAFLVRTARAGLIGP 307 Query: 289 -------------AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A L+ A AQ+ L RV NLD +I ++ K E Sbjct: 308 PETQAASGEAQLMARLAPHDAAARHWAQLQQDLSDRVRHGRAVNLDPAALILDMIFKIEE 367 Query: 336 CNDL 339 Sbjct: 368 TARR 371 >gi|312126881|ref|YP_003991755.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor hydrothermalis 108] gi|311776900|gb|ADQ06386.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor hydrothermalis 108] Length = 534 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 125/319 (39%), Gaps = 28/319 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + + I K L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EVCRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 110 VRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL----KEICKSAKA 288 +L+ + E + + I + ++ K+ E + E Sbjct: 230 HITYKFVANLLGVTSTEIVKEFIAAIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLR 289 Query: 289 AALSGQLEEADQIAQIYFS 307 +AL +L D + + S Sbjct: 290 SALILRLGAKDVLVDMLES 308 >gi|207743469|ref|YP_002259861.1| dna polymerase III subunit gamma/tau (n-terminal fragment) protein [Ralstonia solanacearum IPO1609] gi|206594866|emb|CAQ61793.1| probable dna polymerase III subunit gamma/tau (n-terminal fragment) protein [Ralstonia solanacearum IPO1609] Length = 596 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 140/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 56 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 115 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 116 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 160 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 161 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 220 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 221 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHESNALRLLAAAAQGSMRDALSLTDQA 280 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE + +I A Sbjct: 281 IAYSAGEVTETAVRGMLGAIDQSYLVRLLDALADENGAALIEIADEMAGRSLSFSGALQD 340 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 341 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 396 >gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A] gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A] Length = 726 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 114/287 (39%), Gaps = 25/287 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + + + P L G + I LS S R+ HA LF G +G GK + +A + Sbjct: 7 LYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSINCL 66 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S +P C + + + D + + + N VD IR I Sbjct: 67 ASDAPSISPCGNC------EACQTINKGSSLDVIEIDAASNT---------GVDNIREII 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D ++ A NALLK LEEPP+ V+FIL + +L TI S Sbjct: 112 EQAKFAPMQLRYKIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIIS 171 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ + + L ++ I + V + G + A +L D + Sbjct: 172 RCQRFDYRRIAIEEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLL--DQLSL 229 Query: 236 ISSYIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILK 280 + I+ + + + + + + S + K+ +F + I K Sbjct: 230 FTGKINSEKVNDLVGLISERDLLSLLQAIRSNNSKLIIEFCGQLINK 276 >gi|327390218|gb|EGE88561.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA04375] Length = 551 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|217969820|ref|YP_002355054.1| DNA polymerase III subunits gamma/tau [Thauera sp. MZ1T] gi|217507147|gb|ACK54158.1| DNA polymerase III, subunits gamma and tau [Thauera sp. MZ1T] Length = 716 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 134/335 (40%), Gaps = 36/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKSFGTLVGQEHVVRALTHALATGRLHHAWLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ + + + D++ + + N V+E+ + Sbjct: 65 ETGITAEPCGICDA------CRAIDADRFPDYVEMDAASNR---------GVEEMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + ++ L ++ ++ + AA GS+ A+ +L D+ I Sbjct: 170 CLQFNLKQMPQGHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + + L + + D L + D + + A AL Sbjct: 226 AHGAGRVEEEQVSHMLGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQAL 285 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 + + L + A L+R +++ Sbjct: 286 ATLVHRVA--------LAQYAPAAIADELERARIL 312 >gi|149002400|ref|ZP_01827334.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS69] gi|149010503|ref|ZP_01831874.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP19-BS75] gi|168493019|ref|ZP_02717162.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC3059-06] gi|182683780|ref|YP_001835527.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CGSP14] gi|221231645|ref|YP_002510797.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC 700669] gi|225854373|ref|YP_002735885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae JJA] gi|225858665|ref|YP_002740175.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae 70585] gi|237822659|ref|ZP_04598504.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CCRI 1974M2] gi|147759337|gb|EDK66329.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP14-BS69] gi|147764984|gb|EDK71913.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP19-BS75] gi|182629114|gb|ACB90062.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae CGSP14] gi|183576952|gb|EDT97480.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC3059-06] gi|220674105|emb|CAR68624.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC 700669] gi|225721913|gb|ACO17767.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 70585] gi|225723299|gb|ACO19152.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae JJA] gi|301794000|emb|CBW36398.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae INV104] Length = 551 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|269792441|ref|YP_003317345.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100076|gb|ACZ19063.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio acidaminovorans DSM 6589] Length = 580 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 30/287 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G + + L SGR+ HA LF G +G GK + A + Sbjct: 5 LYRKYRPSRFSEISGQRGVVEALVGSLRSGRIPHAFLFSGPRGCGKTSAARLLAKRLNCA 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P C + + D + + + N ++EIR ++ Sbjct: 65 SPAEDGESCGTCVN------CEAIQRGGHLDVVEIDGASNR---------GIEEIRSLKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++L +V +ID V + A NALLK+LEEPP +V F+L + + TIRSR Sbjct: 110 QVALAPFQAPNKVYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ F +S ++ + + I D + +A G++ A+ +L ++ I Sbjct: 170 CVHFPFQRISTEDIKDRISHVVQMEGIEAEDQALWELARSADGALRDALSLL----EQAI 225 Query: 237 SSYIDLIHIPRQE-----YALQKMQQIADELLSQDQKIAFDFLIEFI 278 S ++ E ++ + +Q+ +L +D AF L + + Sbjct: 226 SVGGGMVTTAAMEGILGGFSRESLQRWVRQL-REDPPGAFQGLAQIV 271 >gi|168490954|ref|ZP_02715097.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC0288-04] gi|183574571|gb|EDT95099.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae CDC0288-04] Length = 551 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|307127584|ref|YP_003879615.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 670-6B] gi|306484646|gb|ADM91515.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae 670-6B] gi|332077278|gb|EGI87740.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA17545] Length = 551 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|94969002|ref|YP_591050.1| DNA polymerase III, subunits gamma and tau [Candidatus Koribacter versatilis Ellin345] gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis Ellin345] Length = 632 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 64/363 (17%), Positives = 141/363 (38%), Gaps = 42/363 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+ H +F G +GIGK T+ A + Sbjct: 5 VLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNC 64 Query: 61 NP--DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 P +C+ K++ + D + + + N +DEIR + Sbjct: 65 QSADHPVSEPCGVCDS------CKEVKAGQSVDVIEIDAATNR---------GIDEIREL 109 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R +++ ++D + A NALLK+LEEPP ++F++ + I TIR Sbjct: 110 REAARYRPARDRFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIR 169 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F+++ +++ L + I D + A GS+ A+ I+ D+ Sbjct: 170 SRCQHFSFHAVKFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIM----DQ 225 Query: 235 IISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFI---------LK 280 I++ + + + ++ I + + + + + + + K Sbjct: 226 AIAACGNQLKTDDVRGLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAK 285 Query: 281 EICKSAKAAALSGQLEEADQIAQIYFSLVKRV-HAFSMYNLDRRQMIFHLLSKARECNDL 339 + + + A ++ + + QI +RV ++ + ++ + +DL Sbjct: 286 QAVRFLRNAMVAKVAGKDSALLQISSDERERVARVAEQFSEEDLARFLQIMLRTH--SDL 343 Query: 340 YFR 342 ++ Sbjct: 344 GYK 346 >gi|94986234|ref|YP_605598.1| DNA polymerase III, subunits gamma and tau [Deinococcus geothermalis DSM 11300] gi|94556515|gb|ABF46429.1| DNA polymerase III, subunits gamma and tau [Deinococcus geothermalis DSM 11300] Length = 737 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 116/301 (38%), Gaps = 20/301 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P+ ++ G E ++ L GR+ HA LF G +G+GK T A Sbjct: 4 LYQRARPINWDQVVGQEHVKDVLKAALEQGRVGHAYLFSGPRGVGKTTTARLIAMTANCT 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C + + + D L + + N +VD++R +R Sbjct: 64 -GPSPKPCGECES------CLAVRNGSHPDVLEIDAASNN---------SVDDVRDLREK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L A G ++ ++D M+R A NALLK+LEEPP V+FIL + I+ TI SRC Sbjct: 108 VGLAAMRGGKKIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRC 167 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F L+ + L E+ + + + A G++ +L + Sbjct: 168 QHYRFRRLTPEEIAGKLADLAEREGVRAEPEALNLIGRLADGAMRDGESLLERMLAAGTA 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + ++++ IA L+ D +A E L E Sbjct: 228 VTRVSVEEALGLPPSERVRGIAAALVQGDAGMALTGAAELYRAGFAARTIVEGLVAACAE 287 Query: 298 A 298 A Sbjct: 288 A 288 >gi|297200751|ref|ZP_06918148.1| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus ATCC 29083] gi|297147718|gb|EDY56355.2| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus ATCC 29083] Length = 577 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 71/362 (19%), Positives = 126/362 (34%), Gaps = 43/362 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 76 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 135 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 136 QGPTPTPCGTCQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 182 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 183 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 242 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L + L + I + V A GSV Sbjct: 243 HHYPFRLVPPGTLREYLGEVCGKENIPVEEGVLPLVVRAGQGSVRDSMSVMDQLLAGARE 302 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 303 EGVTYAMATSLLGYTDGSLLDSVVEAFATGDGAAAFEVVDRVIEG-GNDPRRFVTDLLER 361 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH-LLSKARE 335 I + AA G + D A + + + F L R + + L++ R Sbjct: 362 LRDLVILAAVPDAAEKGLI---DAPADVIERMQAQAGTFGPAELSRAADLVNQGLTEMRG 418 Query: 336 CN 337 N Sbjct: 419 AN 420 >gi|56476074|ref|YP_157663.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] gi|56312117|emb|CAI06762.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] Length = 659 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 28/275 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKNFATLVGQEHVVRALSHALATGRLHHAWLFTGTRGVGKTTISRILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + + D++ + + N V+++ + Sbjct: 65 ETGVTPEPCGTC------AACRAIDADRFPDYVEMDAASNR---------GVEDMAALLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V + +A NA+LK+LEEPP+ V FIL + I T+ SR Sbjct: 110 KAVYAPVQGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + ++ LE + + AA GS+ A+ +L D+ I Sbjct: 170 CLQFNLKQMPPGHIIDHLGGILEAEGVPFEAPALRHLAKAANGSMRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQD 266 + + + + L + + D L + D Sbjct: 226 AHGSGRVEEEQVSHMLGTVGDDHLYAVLDALAAGD 260 >gi|15900748|ref|NP_345352.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae TIGR4] gi|111657220|ref|ZP_01407992.1| hypothetical protein SpneT_02001572 [Streptococcus pneumoniae TIGR4] gi|14972337|gb|AAK74992.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae TIGR4] Length = 551 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|197124085|ref|YP_002136036.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp. K] gi|196173934|gb|ACG74907.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. K] Length = 601 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 124/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P ++A D + + + N VD +R I Sbjct: 65 EKGPTAEPCGVCTP------CVEIAEGRAVDVVEIDAASNN---------GVDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI SR Sbjct: 110 AVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ + L + + + V A G + A+ +L D++ Sbjct: 170 CQRFDFRRLTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLL----DQVR 225 Query: 237 SSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 ++ D + + +IA L+ +D + + +E+ Sbjct: 226 AACGDAPGDDAVAEALGAVDAAAVSRIAGALVGRDGAALLREIEALHDRGLEVKRLAEEL 285 Query: 283 CKSAKAAALSGQLEEA 298 + + ++ + +A Sbjct: 286 VRHLRNVVVAKLVPQA 301 >gi|258513456|ref|YP_003189678.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum acetoxidans DSM 771] gi|257777161|gb|ACV61055.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum acetoxidans DSM 771] Length = 527 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 29/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L + R+ HA LF G +G GK + A + + Sbjct: 6 LYREYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAKALNCH 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ +A + D + + + N +DEIR ++ Sbjct: 66 QIKGVEPCNKCSS------CVSVAQGSAIDVIEIDAASNR---------GIDEIRDLKER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D V + A NALLK+LEEPP+ V+F+L + + TI SRC Sbjct: 111 VKFAPTGGKYKVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRC 170 Query: 182 LSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F S+ L L+ L++ + + + AA G + A+ IL D+II+ Sbjct: 171 QRFDFKSIGAEPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSIL----DQIIT 226 Query: 238 SYIDL------IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 IH + + + + LL D + + E L+ Sbjct: 227 FNNTAEISEEDIHNLLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLE 275 >gi|332076145|gb|EGI86611.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae GA41301] Length = 551 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|238754273|ref|ZP_04615630.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473] gi|238707520|gb|EEP99880.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473] Length = 648 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 33/314 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFAEVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITATPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L + LE+ +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRTQLEKVLQAEQIDSDARALQLLARAADGSMRDALSLTDQAVSMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 230 GQVTTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQVEQAASRGVDWENLLVETLSLL 289 Query: 283 CKSAKAAALSGQLE 296 + A L L+ Sbjct: 290 HRVAMIQLLPSMLD 303 >gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] Length = 583 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYKDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 272 >gi|260893960|ref|YP_003240057.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4] gi|260866101|gb|ACX53207.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4] Length = 427 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 29/318 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P ++ G + + L GR+ HA LF G +G GK + A + Sbjct: 7 LYRAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAYLFAGPRGTGKTSTARILAKALNCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + D L + + +DE+R +R Sbjct: 67 QGPTPVPCDTC------PQCLSIMEGTSLDVLEIDAASRR---------GIDEMRELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+ ++V +ID + AANALLK+LEEPP +V+FIL + I TI SRC Sbjct: 112 VRLSPVHSRYKVYIIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRC 171 Query: 182 LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F L + + L ++ + + AA GS+ A+ +L D+ ++ Sbjct: 172 QRFDFRRLPTALIEEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLL----DQALA 227 Query: 238 SYIDLIHIPRQEYALQKM-QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + L K+ Q +E+L+ QK + + EI + K L Sbjct: 228 WAEGELRAIDVADLLGKVPSQALEEMLTYLQKGDLAGALRLV-NEIEERGKDL----NLF 282 Query: 297 EADQIAQIYFSLVKRVHA 314 D I ++ +++ + Sbjct: 283 VRDLILRLREEILRHLRE 300 >gi|255530648|ref|YP_003091020.1| DNA polymerase III subunits gamma and tau [Pedobacter heparinus DSM 2366] gi|255343632|gb|ACU02958.1| DNA polymerase III, subunits gamma and tau [Pedobacter heparinus DSM 2366] Length = 602 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 71/359 (19%), Positives = 138/359 (38%), Gaps = 36/359 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + I L + ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + C + +F L + N +VD+IR + Sbjct: 66 TSLTAEQEACGTCES------CVSFQTGHSFNFHELDAASNN---------SVDDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V ++ NA NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRIPPQAGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + ++ L ++ I + A G + A+ + Sbjct: 171 RCQIFDFNRIQVEDISGHLNKIAQRENIAVEADGLHIIAQKADGGLRDALSMFDQIVSYT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI------EFILKEICK 284 + + S ID ++I +Y + Q + +S I FD ++ + + Sbjct: 231 NKNLTYKSVIDNLNILDYDYYFKLTQHLTATDVS-HTLILFDEILNNGFDGNNFINGLAS 289 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 + ++ + ++ ++ ++ ++ S I L+ A +C DL +++ Sbjct: 290 HLRNLLVAKD-PQTTKLLEVSENIKQKY--ISQSQQTPVSFILTALNLANQC-DLNYKN 344 >gi|222530074|ref|YP_002573956.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor bescii DSM 6725] gi|222456921|gb|ACM61183.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor bescii DSM 6725] Length = 534 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 125/319 (39%), Gaps = 28/319 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + E I + L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EICRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 110 VRYPPSVCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCMNTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL----KEICKSAKA 288 +L+ + E + + I + ++ K+ E + E Sbjct: 230 HITYKFVANLLGVTSTEIVKEYIAAIVENDSNKGLKVINRLWDEGMDVNTFLEEAVKLLR 289 Query: 289 AALSGQLEEADQIAQIYFS 307 +AL +L D + + S Sbjct: 290 SALILRLGAKDVLVDMLES 308 >gi|296271483|ref|YP_003654115.1| DNA polymerase III subunits gamma and tau [Thermobispora bispora DSM 43833] gi|296094270|gb|ADG90222.1| DNA polymerase III, subunits gamma and tau [Thermobispora bispora DSM 43833] Length = 729 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 121/353 (34%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q +GR+HHA LF G +G GK + A + Sbjct: 5 LYRKYRPGTFAEVKGQEHVTEPLRQALRTGRIHHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 65 KGPTPDPCGECESC----VALAPTGPGHIDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + R NALLK +EEPP + F+ + ++ TI+SR Sbjct: 112 AFFAPVSARFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSRT 171 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F + + + L+Q + + V A GS + IL + Sbjct: 172 HHYPFRLMPPATLRQLIEEILQQEGVPYEPAALPLVVRAGAGSARDTLSILDQLLAGADE 231 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 + L+ + +I + +D FD + I ++ Sbjct: 232 SGITYQRAVSLLGYTDG----GLLDEIVEAFAQRDGARVFDTVNRVIEGGHDPRRFATDL 287 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + + + +A D+ A L + + L R +F+ Sbjct: 288 LERFRDLVILANVPDAADRGLLDRPADELERLKAQAASMGPAELTRAAEVFNA 340 >gi|148984597|ref|ZP_01817865.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP3-BS71] gi|149026346|ref|ZP_01836501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP23-BS72] gi|225856531|ref|YP_002738042.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae P1031] gi|307067463|ref|YP_003876429.1| DNA polymerase III subunits gamma/tau [Streptococcus pneumoniae AP200] gi|147922988|gb|EDK74103.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP3-BS71] gi|147929308|gb|EDK80307.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae SP23-BS72] gi|225724656|gb|ACO20508.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae P1031] gi|301799858|emb|CBW32433.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae OXC141] gi|306409000|gb|ADM84427.1| DNA polymerase III, gamma/tau subunits [Streptococcus pneumoniae AP200] Length = 551 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|329903603|ref|ZP_08273561.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] gi|327548263|gb|EGF32958.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] Length = 287 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 33/294 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+HHA LF G +G+GK TL A Sbjct: 12 VLARKYRPRSFDTLVGQEHVVRALSHALDTGRLHHAYLFTGTRGVGKTTLSRILAKAFNC 71 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P +C + + D++ L + N V+E+ Sbjct: 72 IGIDGNGGITATPCGVC------AACSAIDAGRFVDYIELDAASNR---------GVEEM 116 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 117 AQLLEQAVYAPSNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 176 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL + ++ L+ Q I + A+GS+ A+ + Sbjct: 177 TVLSRCLQFNLKQMPPGHIVAHLDDILGQEGIGFETPALRLLAQGAHGSMRDALSL---- 232 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILK 280 D+ I+ + + + L + Q + D L +QD E ++ Sbjct: 233 TDQAIAYAAGTVTLDAVQGMLGALDQSYLIRLLDALAAQDGAGLLAVADEMAVR 286 >gi|220918864|ref|YP_002494168.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-1] gi|219956718|gb|ACL67102.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-1] Length = 601 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 124/316 (39%), Gaps = 37/316 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P ++A D + + + N VD +R I Sbjct: 65 EKGPTAEPCGVCTP------CVEIAEGRAVDVVEIDAASNN---------GVDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI SR Sbjct: 110 AVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ + L + + + V A G + A+ +L D++ Sbjct: 170 CQRFDFRRLTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLL----DQVR 225 Query: 237 SSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 ++ D + + +IA L+ +D + + +E+ Sbjct: 226 AACGDAPGDDAVAEALGAVDAAAVSRIAGALVGRDGAALLREIEALHDRGLEVKRLAEEL 285 Query: 283 CKSAKAAALSGQLEEA 298 + + ++ + +A Sbjct: 286 VRHLRNVVVAKLVPQA 301 >gi|291326691|ref|ZP_06125481.2| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131] gi|291313231|gb|EFE53684.1| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131] Length = 652 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 142/353 (40%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 10 VLARKWRPQKFSDVVGQQHVLTALANGLTHQRLHHAYLFSGTRGVGKTTIARLFAKGLNC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +P C ++ D + + + K V++ R + Sbjct: 70 ETGITASPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 115 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 174 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 CL +L + + LE I R + AA GS+ A+ + + Sbjct: 175 CLQFHLKALDVTQISEQLELILNAENIEHDQRARQLIARAADGSLRDALSLTDQAIAMGQ 234 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQI--ADELLSQDQKIA-------FDFLIEFILKEI 282 K+ + + ++ E L ++ + AD + +Q ++ L+ +L ++ Sbjct: 235 GKVTADIVSQMLGTLDDEQPLAIIEALVRADSMAVMEQVEQAASRGADWENLLVEVLSQL 294 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L E+ + L + S +L Q+ + L R+ Sbjct: 295 HRIAMIQLLPA--EQETDPSSTEGRLRQVARIISPADL---QLFYQTLLVGRK 342 >gi|255994278|ref|ZP_05427413.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum ATCC 49989] gi|255993946|gb|EEU04035.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum ATCC 49989] Length = 473 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 36/354 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + F P + G E+I K +G + HA L G +G GK TL A V Sbjct: 8 LYTRFRPNTFDEVIGQENIIKVFLNQLKAGSVSHAYLLCGIRGTGKTTLARLMAKAVNC- 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D K P C + + + D + + + N VD++R + Sbjct: 67 LDPQKKPCGACEN------CRSITEESHMDVIEIDAASNN---------GVDDVRELIDT 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ + +V +ID V +++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 112 VAYPPSVAEKKVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRC 171 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 + ++E++L K L E + + + A GS+ A+ IL D+ Sbjct: 172 MRFDLRRITESDLVKRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILEQVMAIDEG 231 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF----DFLIE-----FILKEICKSA 286 I + D++ K+ +I D +LS D + A + + L ++ Sbjct: 232 IITREDVLE-SLHAVGDGKIIEIMDGVLSNDLEKAIVTCNNAFDDGKDEKQFLNDLLIYL 290 Query: 287 KAAALSGQLEEADQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 + L+ E D + ++ + + S ++D I + + DL Sbjct: 291 RNMMLAKVSGELDALINMHSDDINELKRQASGVSMD---FIERAIFEIVRIIDL 341 >gi|171058659|ref|YP_001791008.1| DNA polymerase III subunits gamma and tau [Leptothrix cholodnii SP-6] gi|170776104|gb|ACB34243.1| DNA polymerase III, subunits gamma and tau [Leptothrix cholodnii SP-6] Length = 650 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 133/345 (38%), Gaps = 42/345 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRSFAELVGQAHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C+ + + + D++ L + N VDEI Sbjct: 65 VGADGLGGITATPCGVCSA------CRDIDAGRHVDYVELDAASNR---------GVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V ++ A NA+LK+LEEPP+ + F+L + + Sbjct: 110 SQLLDQAVYKPVVGRFKVYMIDEVHMLSTTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ +++ L+ + D + A GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMATETVFEHLQTVLNAESVPFEDPALRLLARGARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + L + +I + L + D + E A Sbjct: 226 TDQAIAYAGGHLGEAAVRQMLGAVDRGHGVRIVEALAASDGVALVRTVDEL-------RA 278 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 + + +G LEE +AQ L A + D + L+ Sbjct: 279 QGLSAAGTLEELADLAQQMAVLQAVPQAIDPTHPD--AAVLQGLA 321 >gi|15902813|ref|NP_358363.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae R6] gi|116516459|ref|YP_816247.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae D39] gi|15458364|gb|AAK99573.1| DNA-directed DNA polymerase III chain [Streptococcus pneumoniae R6] gi|116077035|gb|ABJ54755.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae D39] Length = 551 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLPALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|144898666|emb|CAM75530.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 586 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 123/320 (38%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ SGR+ HA + G +G+GK T A + Sbjct: 12 VLARKYRPTDFATLIGQDAMVRTLTNAIASGRLAHAFVLTGVRGVGKTTTARIIARALNC 71 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC + +A D L + + V++IR Sbjct: 72 IGPDGQGGPT----IDPCGQCEHCRAIAEDRHVDILEMDAASRT---------GVNDIRE 118 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + ++V +ID V ++ A NALLK+LEEPP+ V FI + I T+ Sbjct: 119 IIESVRYRPTSARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVTV 178 Query: 178 RSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + L K ++ + AA GSV + +L D Sbjct: 179 LSRCQRFDLRRVEMEVLAKHFSGIADKEGAEIEPGALRLIARAADGSVRDGLSLL----D 234 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS L+ Q+ D L D+ FD E ++K A L+ Sbjct: 235 QAISHGAGLVSEA----------QVRDMLGLADRARVFDLF-ELVMKGQMAPALDL-LAE 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 Q A + +++ H Sbjct: 283 QYALGADPAVVVQDMLELAH 302 >gi|148988284|ref|ZP_01819731.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae SP6-BS73] gi|147925965|gb|EDK77039.1| DNA polymerase III, gamma and tau subunits [Streptococcus pneumoniae SP6-BS73] Length = 551 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLPALDDYVASLSQQDVPKALSCLNLLFD 273 >gi|289167756|ref|YP_003446025.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6] gi|288907323|emb|CBJ22160.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6] Length = 551 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVTKALSCLNLLFD 273 >gi|256027041|ref|ZP_05440875.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D11] gi|289765024|ref|ZP_06524402.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] gi|289716579|gb|EFD80591.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] Length = 482 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL S + +FD IE K++ Sbjct: 230 GKEINLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELESLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A L +L+ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAILKKELD-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|289679612|ref|ZP_06500502.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae FF5] Length = 212 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 19/223 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + K L S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ D + + + K V++ R + Sbjct: 65 ETGITSTPCGTC------SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 NVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYG 219 CL +++ + + L + D + AA G Sbjct: 170 CLQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAAGG 212 >gi|260494910|ref|ZP_05815039.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] gi|260197353|gb|EEW94871.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] Length = 482 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTVARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL S + +FD IE K++ Sbjct: 230 GKEINLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELESLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A L +L+ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAILKKELD-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum 'So ce 56'] gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum 'So ce 56'] Length = 829 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 110/288 (38%), Gaps = 29/288 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + L+ R+ HA LF G +G+GK T A + Sbjct: 41 VLARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAKALNC 100 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + C P ++ A D + + VDE+R+++ Sbjct: 101 VHGPTATPCQTCAP------CAEITVGADVDVQEIDGASYN---------GVDEVRKLQE 145 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 L +++ ++D V ++ A NA LK+LEEPP V FI + + TI SR Sbjct: 146 SLPYRPARDRFKIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSR 205 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F + + L+Q KI D + A GS+ A+ +L Sbjct: 206 CQRYDFKLIGAQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVG 265 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 D+I + + + L ++A L+ D + E Sbjct: 266 TSGDRITAEGVAKVLGVADRVVL---HRLAGALVDGDPAACVRIVGEL 310 >gi|123443301|ref|YP_001007275.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090262|emb|CAL13128.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 656 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 128/335 (38%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL + + LE++ +I + AA GS+ A+ + D Sbjct: 170 CLQFHLKVIDVEVIRAQLEKILLAEQISSDARALQLLARAADGSMRDALSLADQAIAMGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ I E L ++ + ++ + + ++ L+ L + Sbjct: 230 GHVTTATVSQMLGILDDEQPLAIIEALVSADGARVMAQLEQAASRGVDWENLLVETLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L+ A I L + Sbjct: 290 HRIAMVQLLPSMLDN--HYATIEPRLRELARTLPP 322 >gi|301347172|ref|ZP_07227913.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB056] gi|301511423|ref|ZP_07236660.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB058] gi|301594146|ref|ZP_07239154.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii AB059] Length = 417 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLS---QDQKIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ ++ L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|56697579|ref|YP_167948.1| DNA polymerase III subunit delta' [Ruegeria pomeroyi DSS-3] gi|56679316|gb|AAV95982.1| DNA polymerase III, delta prime subunit, putative [Ruegeria pomeroyi DSS-3] Length = 373 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 166/360 (46%), Gaps = 29/360 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 A P RLFG + E+ Y S R+HH L G +G+GKATL +R A +L P Sbjct: 13 GAPHPRETPRLFGQDAAEQAFLSAYGSDRLHHGWLLTGPEGVGKATLAWRIARFLLATPP 72 Query: 64 FSK-------APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 S P + DP P ++M + A ++ SLN G+ R I V+++R Sbjct: 73 QSDDGLFGAPPPPDTLDIDPEHPVARRMQAGAEPGLAAITRSLN-DQGRLRAEIVVEDVR 131 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L T Sbjct: 132 KLGRFFGLSAADGGRRVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPT 191 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 IRSRC +++ LS ++ ALEQ G + + + A GSV RA+++L+ D + Sbjct: 192 IRSRCRTLRLTPLSPADMQSALEQAGA-GTEVMPEHLAALASGSVGRALRLLNLDGLALY 250 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA------ 290 + I L+ + +A+ ++ FD L+ I + + A++ A Sbjct: 251 AELIALLDTM-PRLDRPRALALAEVAAARGAAERFDLLLGLIDIALARLARSGATGMPPQ 309 Query: 291 -------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 L+ + + A + ++ R NLD ++ + K ++ Sbjct: 310 PEAAMGEAQVLARLAPDPDSGRRWADVAATISARARHGQAVNLDPAALVLDTVFKMQDTA 369 >gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola F0289] gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola F0289] Length = 600 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K A ++ L + N +V+ I+ + Sbjct: 66 EHPTVDGEACNECES------CKAFAEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAA 227 >gi|332160791|ref|YP_004297368.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604677|emb|CBY26175.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica Y11] gi|325665021|gb|ADZ41665.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863114|emb|CBX73244.1| DNA polymerase III subunit tau [Yersinia enterocolitica W22703] Length = 656 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 127/335 (37%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL + + LE++ +I + AA GS+ A+ + D Sbjct: 170 CLQFHLKVIDVEVIRAQLEKILLAEQINSDARALQLLARAADGSMRDALSLADQAIAMGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 230 GHVTTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQLEQAASRGVDWETLLVETLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L+ A I L + Sbjct: 290 HRIAMVQLLPSMLDN--HYATIEPRLRELARTLPP 322 >gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] Length = 610 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L SG++ HA LF G +G+GK T +A + Sbjct: 23 VSARKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 82 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 83 LHPTADGEACNECES------CKAFNEQRSYNIFELDAASNN---------SVENIKSLM 127 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI S Sbjct: 128 DQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 187 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N++ L E+ I D + + A G + A+ + Sbjct: 188 RCQIYDFERMTTNDIINHLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAA 244 >gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella melaninogenica ATCC 25845] gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella melaninogenica ATCC 25845] Length = 603 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPTADGEACNECES------CKAFGEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAA 227 >gi|189219682|ref|YP_001940323.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum V4] gi|189186540|gb|ACD83725.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum V4] Length = 618 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 41/325 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E + + L GR+ HA LF G +G GK TL A + Sbjct: 18 VFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSLNC 77 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + DP P + + D + + + N VD++R +R Sbjct: 78 ADGPNA------DFDPDDPICLDIDAGRSLDCIEIDGASNN---------GVDQVRELRE 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ +ID V + + A NALLK LEEPP V FI + I T+ SR Sbjct: 123 AAKSLPVQSRYKIYIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSR 182 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L+ Q KI + + + G++ A D++I Sbjct: 183 CQRFHFKRIPRRLIADHLQKICIQEKIDAERKALEMIADISEGALRDA----EVALDQLI 238 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---G 293 S Y + I + + + L +L ++ + AL Sbjct: 239 SFYGEKIDQSSVQEMFGLVG--------------IEPLCR-LLTDLAQGDGRGALKEAHQ 283 Query: 294 QLEEADQIAQIYFSLVKRVHAFSMY 318 LE + S +H ++Y Sbjct: 284 LLESGKDPLSLLRSFRNLLHDIALY 308 >gi|171912028|ref|ZP_02927498.1| DNA polymerase III, gamma and tau subunits [Verrucomicrobium spinosum DSM 4136] Length = 676 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 121/329 (36%), Gaps = 35/329 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + + + L R+ HA LF G +G GK + +A + Sbjct: 19 VFARKYRPRTFEDVLGQDHVVRTLRNAIAQNRLAHAYLFVGPRGTGKTSTARIFAKALNC 78 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + DP ++ D + + N V+++R +R Sbjct: 79 PNGP------RVDFDPDDEVCVEIEKGISLDVREIDGASNN---------GVEQVRELRE 123 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ID V ++ A NALLK+LEEPP+ V FI + + +L TI SR Sbjct: 124 EVKFAPTRCRYKIYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISR 183 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + K L + K+ + + A G + A +L D+++ Sbjct: 184 CQRFDLRRIPAGLIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSML----DQLV 239 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I Q + D + + + ++ + K L Q + Sbjct: 240 AFCGERIEE----------QDVLDIFGFTRGETVANLAARVLDRDTVGALKE--LHSQAD 287 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + ++ L++ ++ +D Sbjct: 288 TGKDLGRLLTDLIQHFRTLLVHQVDPAAA 316 >gi|329767046|ref|ZP_08258574.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] gi|328837771|gb|EGF87396.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] Length = 571 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 141/352 (40%), Gaps = 53/352 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L ++ HA LF G +G GK ++ +A V +N Sbjct: 5 LYRKYRPQTFADIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEVNKN 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ K D + + + N VDE+R I+ Sbjct: 65 EEYQKE---------------------NVDIIEIDAASNN---------GVDEVRDIKEA 94 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 95 IKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRC 154 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +LS+ L L E+ ++ D+ + + A G + AI IL +S Sbjct: 155 QRFEFKNLSQEQLIDRLKYISEKESLVIEDAAIEKIATLAKGGLRDAISILDQ-----VS 209 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + I + I + S + F + ++ KS + + + Sbjct: 210 NYSEEITLNH----------ILEVTSSISEDDILVFYRNLLQGDVTKSLLTY--NNFVSQ 257 Query: 298 ADQIAQIYFSLVKRVHAFSMY-NL-DRRQMIFHLLSKARECNDLYFRDFYAI 347 A + L+ +Y NL D + +++ A E N++ F FY I Sbjct: 258 AKDTKLLLNDLINVTRDVVVYKNLKDTKHTAYNIDKIADEVNNINFDYFYKI 309 >gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella melaninogenica D18] Length = 603 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPTADGEACNECES------CKAFGEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAA 227 >gi|297170606|gb|ADI21632.1| DNA polymerase III, gamma/tau subunits [uncultured myxobacterium HF0130_06F04] Length = 633 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 130/322 (40%), Gaps = 37/322 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L+ R+HHA LF G +G+GK T A + Sbjct: 6 LARKYRPRLFADIVGQEHVVQTLTNAISMDRVHHAFLFTGARGVGKTTTARILAAALNAE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + PV +AS A D L + + N VD IR +R Sbjct: 66 GGPATEPV------LDDSICADIASGACPDVLEIDGASNT---------GVDNIRELREN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +++ +ID V ++ A NALLK+LEEPP V FI + I TI SRC Sbjct: 111 VRYLPSRARFKLYIIDEVHMLSTAAFNALLKTLEEPPAHVKFIFATTEPHKIPVTILSRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + +L L++ + V A GSV A+ +L D+++S Sbjct: 171 QRFDFRKVPMALLVEHLRSILDKEGLSLGPEAVQAVAREAQGSVRDAMSLL----DQVLS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE- 296 P QQ+ + L D++ F+ L I + + AL +++ Sbjct: 227 FTG---GQPDD-------QQVIEALGIVDRQTIFELLDSVIAR---NADDLLALIARIDA 273 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 +++ + LV+ + ++ Sbjct: 274 RGHELSDVCTLLVEHIRDVMVF 295 >gi|299133889|ref|ZP_07027083.1| DNA polymerase III subunit delta' [Afipia sp. 1NLS2] gi|298591725|gb|EFI51926.1| DNA polymerase III subunit delta' [Afipia sp. 1NLS2] Length = 347 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 165/337 (48%), Gaps = 9/337 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P L GH E L Y SG++ HA L G QGIGKATL +R A VL +PD S Sbjct: 15 HPRETTSLHGHAAAEASLLTAYKSGQIPHAWLIGGGQGIGKATLAYRMARFVLAHPDPSS 74 Query: 67 APV---RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V D P +Q+A+ + L L S N K G R+VITVDE R F Sbjct: 75 QDVQQAGTLQVDAPHPVARQIAAGSHGGLLTLERSANDK-GVMRSVITVDESRETISFFG 133 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N NA+NALLK LEEPP + LF+L+S+ +L+TI+SRC Sbjct: 134 STAAVAGWRVCIVDTVDELNANASNALLKILEEPPSRSLFLLVSNMPSRVLATIQSRCRK 193 Query: 184 IKFNSLSENN-LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + LS + + E ++ D + AA GSVA A+ ++ + + L Sbjct: 194 LSLRPLSVDEVIAAGAEAMQSDAADPQLREAAEAADGSVAHALMLIGGEALGLQQRTAAL 253 Query: 243 IH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +PR ++ + + + D L D+ +A +E + + + +A L L + Sbjct: 254 LDMLPRLDH--RALHALGDALPLNDR-VALRTFVETVERWLSARLRADELQSNLPRLARF 310 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A+++ + K +NL+R+ ++F + E + Sbjct: 311 AEVWEKVGKAARETESFNLERKPLVFSVFGWLAEASA 347 >gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] Length = 638 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + ++ L + N VD+I+ + Sbjct: 66 EHPREDGEACNECES------CRAFNEQRSYNIFELDAASNN---------GVDQIKVLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPPQ V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N L E+ I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVANTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAA 227 >gi|256545280|ref|ZP_05472645.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis ATCC 51170] gi|256399107|gb|EEU12719.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis ATCC 51170] Length = 583 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L SG++ HA LF GE+G GK T +A + Sbjct: 5 LYREYRPQKFSDVLGQDRVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K + + D + + + N +D+IR ++ Sbjct: 65 NPIDLSPCGECEN------CKSIEEESTMDVVEMDAASNR---------RIDDIRNLKET 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 110 VVYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + ++ K L I ++ + A G++ A+ IL D+++S Sbjct: 170 QKFEFNKIGREDIIKQIDIILSDRNITIEQEAKELIVKKAKGAMRDALSIL----DQVLS 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + + E L + + ++ ++S +QK + D L + Sbjct: 226 IDKNNFTLKDVENILGLVDFESLDKLIANIISYNQKDSLDLLFDL 270 >gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] Length = 583 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYKDTLAITGYADQV-KIEALFLDLLNRKTSQALEEVEELL 272 >gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] Length = 618 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 19/234 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + L GR+ HA LF G +G+GK + A + Sbjct: 20 VVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKALNC 79 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ + + D L + + N ++EIR++R Sbjct: 80 QRGPSATPCNECD------ICRSVTVGEDVDVLEIDGASNR---------GIEEIRQLRS 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ + +++ +ID V + A NALLK+LEEPP+ V FI + I T+ SR Sbjct: 125 NVNIRPSRARFKIYIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSR 184 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 C F + + + L E + + A GS+ + +L Sbjct: 185 CQRFDFGGIRMDEIVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQ 238 >gi|315925749|ref|ZP_07921956.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter alactolyticus ATCC 23263] gi|315620858|gb|EFV00832.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter alactolyticus ATCC 23263] Length = 567 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 39/343 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L SGR+ HA L G +G GK T+ +A + Sbjct: 23 LYRKYRPQTFDEVVGQDFVTRILKNQIISGRVGHAYLLTGIRGTGKTTIAKIFARAINCT 82 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ + D + + + N VDEIR IR Sbjct: 83 DNRGGNPCNAC------AVCREIEKPGVMDIIEIDAASNR---------GVDEIRDIREK 127 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + R A NALLK+LEEPP V+FIL + + TI SRC Sbjct: 128 VKYPPTLGAYKVYIIDEVHMLTREAFNALLKTLEEPPAHVVFILATTEPNKLPMTILSRC 187 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 + + + L+ + + + FV S+ A+ IL D Sbjct: 188 QRFDIRPIDQEVIADRMRMILQDIGVAMDEDALQFVAARGDHSMRDALSILDQIIDIRED 247 Query: 232 CDKII-SSYIDLIHIPRQEYALQKMQQIADELL-------------SQDQKIAFDFLIEF 277 I + + + ++ L + + D +D + D LI Sbjct: 248 GAAITQEQVLGFLGMADRQMILALARAMIDGAADQALLTLQTLRAEGKDAALILDQLITC 307 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + + + A L + + + K ++ + Sbjct: 308 FRELLVAATTGPAAMRILGIGEAAFETLSATAKAAGKNRLFTM 350 >gi|291333850|gb|ADD93532.1| DNA polymerase III subunits gamma and tau [uncultured marine bacterium MedDCM-OCT-S04-C191] Length = 625 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 131/355 (36%), Gaps = 39/355 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R P + L G + I + L SGR+ HA LF G +G+GK + + Sbjct: 5 VLARKLRPNRFEDLIGQKTISRTLRNAVTSGRVAHAFLFSGSRGVGKTSAARILTKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C ++ +A D + + N ++ IR +R Sbjct: 65 LAPEDGNPCGKCRN------CIEITENASPDVYEIDAASNR---------GIENIRELRD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID + + NALLK+LEEPP V FIL + + TI SR Sbjct: 110 NVQYAPAQCRYKVYIIDEAHMLTLESFNALLKTLEEPPSHVKFILATTDPHKLPQTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAI----KILHYDC 232 C F + + LE+ ++ + + A G + A+ ++L + Sbjct: 170 CQRYDFVRVPLQQMAGFLEKVTVAEQLSISRRALEIISRQAVGGMRDALTMIDQVLSFTG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF------ILKEICKS 285 D ++++ I + ++ + + + I F L + +L ++ K Sbjct: 230 DSAKDEEVLEILGIVDGDSRFAFLESLIGS-RADEAMIHFQNLQDHGHDLHELLAQLLKE 288 Query: 286 AKAAALSGQLEEADQIAQIY-----FSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 K +L + + Q Y S K + R Q IF +L E Sbjct: 289 VKTLSLIQAVGPESVLFQDYTRDDVDSYRKLAGETTSS---RLQQIFDILLDLEE 340 >gi|257466568|ref|ZP_05630879.1| DNA polymerase III subunits gamma and tau [Fusobacterium gonidiaformans ATCC 25563] gi|315917723|ref|ZP_07913963.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC 25563] gi|313691598|gb|EFS28433.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC 25563] Length = 478 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 28/273 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V Sbjct: 5 LYRKYRPASFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 NP +C + D + + + N +DEIR ++ Sbjct: 65 NPKEDGEACGVCEN------CLSFQEGSFLDLIEIDAASNR---------GIDEIRLLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEPDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS ++ L+ Q + + ++ + A+ GS+ AI IL ++ Sbjct: 170 CQRYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILER---LLV 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLS 264 S+ I + E L QKM+Q LL Sbjct: 227 SASEKKISLEESEKILGMTPVQKMEQFLHCLLG 259 >gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola CRIS 18C-A] gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola CRIS 18C-A] Length = 600 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K A ++ L + N +V+ I+ + Sbjct: 66 EHPTVDGEACNECES------CKAFAEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAA 227 >gi|206603199|gb|EDZ39679.1| DNA polymerase III subunit gamma/tau [Leptospirillum sp. Group II '5-way CG'] Length = 540 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 28/306 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L+ SG++ ALLF G++G+GK T+ A + Sbjct: 7 LARKWRPQLFSDLVGQEFVVRALTGTLSSGKLPQALLFSGDRGVGKTTVARILAKAINCE 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P + C+ ++ D L + + + V++IR +R Sbjct: 67 KGPTVNPCQECDS------CLEITRGTSPDVLEIDGASHT---------GVEDIRSLREG 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + RV +ID V +++ A NALLK+LEEPP V+FI + I TI SRC Sbjct: 112 IRYLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRC 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 +F SL + LE Q + + + + A+ GS+ A+ +L D Sbjct: 172 QHFRFRSLGVPEITAKLENIVRQELLSFPRAILNLIARASGGSLRDALSLLDQIRFLGDT 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + + + +++ D LL + K A + + I A +L+ Sbjct: 232 PRSVEETALFLGMAGGLPE----KKLLDSLLEGNLKNALENGDRILAMGIDPRATLRSLA 287 Query: 293 GQLEEA 298 ++ + Sbjct: 288 SKVRDL 293 >gi|307706413|ref|ZP_07643223.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK321] gi|307618200|gb|EFN97357.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK321] Length = 551 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTTISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|169825651|ref|YP_001695809.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] gi|168990139|gb|ACA37679.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] Length = 578 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 40/320 (12%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G +++ L + + HA LF G +G GK + +A + S+ P C Sbjct: 3 GQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHAPSEEPCNEC--- 59 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 + + D + + N V+EIR I + + ++V + Sbjct: 60 ---ATCLSITDGSHPDVIEFDAASNS---------RVEEIRDIIEKVRFAPASSRYKVYI 107 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ID V ++ +A NALLK+LEEPP +FIL + + +TI SRC F LS N++ Sbjct: 108 IDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTNDII 167 Query: 196 KA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYA 251 + LE +++ + + +A G + A+ +L D+++S + + + Sbjct: 168 ERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLL----DQVVSFSGEKLKLEDTLLV 223 Query: 252 LQKMQQ-----IADELLSQDQKIAFDFLIEFILK---------EICKSAKAAALSGQLEE 297 + Q +A+ L ++D L + I ++ + L L+ Sbjct: 224 TGSISQEVFYDLANALKAKDVAQMLALLEQLITDGKDPLRLSEDLITFFRDLLL---LQT 280 Query: 298 ADQIAQIYFSLVKRVHAFSM 317 ++ +A++ + S+ Sbjct: 281 SEDLAELLELVSPEERVLSL 300 >gi|269926492|ref|YP_003323115.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] Length = 550 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 29/285 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G E ++K L SG++ HA LF G +G GK + A V Sbjct: 5 LYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +K P C+ + D + + + K V+++ I Sbjct: 65 SEGTK-PCNSCSA------CLSINEGRAVDLIEIDAASRRK---------VEDVADIIER 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID V + +A NALLK+LEEPP +F+L + +L TI SRC Sbjct: 109 VNFAPAELRYKVYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ + + L E I + A+ GS+ AI IL D Sbjct: 169 QRFDFRRITPREIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDE 228 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + L+ I ++ + I D D + A L + Sbjct: 229 EITLEHVKQLLGIVGEDVVANFVGAIID----NDTQAALSLLTQL 269 >gi|306829660|ref|ZP_07462850.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis ATCC 6249] gi|304428746|gb|EFM31836.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis ATCC 6249] Length = 552 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNSCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDITAHIHHILEKENISSEPDAIEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + ++ + I +L + L QD A D L Sbjct: 230 NALTTAISEEIT---GTISLSALDDYVAALSQQDVPKALDSL 268 >gi|307709201|ref|ZP_07645660.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK564] gi|307620147|gb|EFN99264.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK564] Length = 551 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 115/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALACL 268 >gi|241667459|ref|ZP_04755037.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876006|ref|ZP_05248716.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842027|gb|EET20441.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 389 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 133/315 (42%), Gaps = 38/315 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CLAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S++++ L+ + I + D++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQSDIKDQLKVVLNKENINSDEQSLDYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + + + L +++ I + ++ + + L E A Sbjct: 227 FCSGELKQAQIKQMLGIIDSEEVYNIIEAIIGNNPSAVLPAVKNLTLTESNADAV----- 281 Query: 293 GQLEEADQIAQIYFS 307 D+IA+I+F+ Sbjct: 282 -----LDRIAEIWFA 291 >gi|221067924|ref|ZP_03544029.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni KF-1] gi|220712947|gb|EED68315.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni KF-1] Length = 723 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 124/341 (36%), Gaps = 34/341 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRTFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P +C ++ S D+ L + N VDE+ Sbjct: 65 QGLDGNGGITATPCGVC------AACTEIDSGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTHVLDKESVPAEPQALRLLSRAARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + L + ++ D L + + E + ++ Sbjct: 226 TDQAIAFGSGQLQEATVRQMLGSVDRSHVFRLIDALAQGHGRTVVEVSEELRHNGLSAAS 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + L+ + Q + +DR + Sbjct: 286 TLEEMCAVLQRMAVL-QAVPDMPLDASDPEAAEVDRLASLM 325 >gi|294838670|ref|ZP_06783353.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. 6013113] Length = 420 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + LS GR+HHA LF G +G+GK T+ A + Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K + D + + + K V++ R + Sbjct: 64 ETGVTSTPCEVC------ATCKAVNEGRFIDLIEIDAASRTK---------VEDTRELLD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+ + + T+ SR Sbjct: 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + K LE+ +I + +A GS+ A+ + D+ I Sbjct: 169 CLQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL----TDQAI 224 Query: 237 SSYIDLIHIPRQEYALQKMQQ--IADELLSQDQ---KIAFDFLIEF---------ILKEI 282 + +H + L + + I D +L+ Q + L++F +L ++ Sbjct: 225 AYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 283 CKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + AL L E +I +++ S +L Q+ + + K R Sbjct: 285 ISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL---QLYYQIACKGRS 336 >gi|294630200|ref|ZP_06708760.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14] gi|292833533|gb|EFF91882.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14] Length = 519 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 122/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 16 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 75 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 76 EGPTPTPCGACQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPARSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L + L ++ I + V A GSV Sbjct: 183 HHYPFRLVPPGTLREYLGEVCQKEDIPVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA 242 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 243 DGVTYAMATSLLGYTDGSLLDSVVEAFSSGNGSAAFEVVDRVIEG-GNDPRRFVADLLER 301 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + + + +F L R I + Sbjct: 302 LRDLVILAAVPDAAEKGLI---DAPADVIERMQAQARSFGAAELSRAADIVN 350 >gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708] gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708] Length = 663 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 122/343 (35%), Gaps = 42/343 (12%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I L+ S ++ A LF G +G GK + A + + Sbjct: 9 KYRPKSFAELVGQEAITTTLTNAISSAKIAPAYLFTGPRGTGKTSSARILAKSLNCLKSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 KPTPIPCGVCD------ICQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDK 234 F + + K L + I V + G + A +L + Sbjct: 174 RFDFRRIHLEAMVKHLGAIASKENINICLDAVTLVAQMSQGGLRDAESLLDQLALFPGEV 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKS 285 I DL+ + + + + D + + +I D + IL+ + Sbjct: 234 IPDQVWDLVGSVSE----KDLLALLDAITQDNAEIVLDSTRQILDRGREPLTILQNVAAF 289 Query: 286 AKAAALSGQLEEADQIA----QIYFSLVKRVHAFSMYNLDRRQ 324 + ++ + Q + +L+ H + + R Q Sbjct: 290 YRDLLIAKTAPNRQDLVACTQQTWTTLINFAHKLDITTILRGQ 332 >gi|300312975|ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae SmR1] gi|300075760|gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 140/361 (38%), Gaps = 44/361 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -NPDFSK----APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + AP +C + + D++ + + N VDE+ Sbjct: 65 VGPDGAGGITAAPCGVC------EACVAIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + ++V MID V + +A NA+LK+LEEPP+ + FIL + I Sbjct: 110 AQLLEQAIYAPSNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL + ++ L+ Q I + A GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIIGHLDNILNQEGIEFDAPALRLLAQGASGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + + + L + Q I D L QD + + + +A Sbjct: 226 TDQAIAYAAGKVTLEAVQGMLGALDQSYLIRILDALAVQDGAALLGVADDMATRSLSYNA 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYA 346 L L + L + V A +L R+ I L + + + + FY Sbjct: 286 ALQDLGTLLHQIA--------LAQAVPAALADDLPNREDILRLSGQF---SPEHVQLFYQ 334 Query: 347 I 347 I Sbjct: 335 I 335 >gi|257461237|ref|ZP_05626334.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268] gi|257441265|gb|EEV16411.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268] Length = 763 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 74/361 (20%), Positives = 147/361 (40%), Gaps = 41/361 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P ++L G + + K L+ SGR+ HA LF G +G GK + +A +L + Sbjct: 4 LALKYRPKSFEQLIGQDAVAKSLAHALDSGRLSHAYLFSGLRGSGKTSTARIFAKALLCD 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ D + + + + K +D+IR + Sbjct: 64 KGPTGKPCEVCDN------CVMANEGRHIDIIEMDAASHRK---------IDDIRELIEQ 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID V + + A+NALLK+LEEPP V FIL + + T+ SR Sbjct: 109 TKYHPASARFKIFIIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRT 168 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F ++++ + L Q+ I D + + + GS+ + +L Sbjct: 169 QHFRFKPIAKSAVVAHLAQILKTENIAYEDGALEILARSGSGSLRDTLTLLDQAIIFSRE 228 Query: 232 --CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------IEFILKEI 282 + I+ + L+ K+ +I D +L QD+ A + + E I+ E+ Sbjct: 229 GITQRAIADMLGLL-------DPAKIGEILDIVLRQDRAGAIEIIKEVENYNAETIIDEM 281 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 + K L + + + + +F ++ + + D I ++ E +L Sbjct: 282 IANLKDKFLRRDAKFSLLMYERFFRILAGAKSMLAISPDNTYAISMMIFMMMEAVNLREI 341 Query: 343 D 343 D Sbjct: 342 D 342 >gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] Length = 587 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 10 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 70 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 175 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 235 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 276 >gi|86608779|ref|YP_477541.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] Length = 779 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 19/230 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G + + L+ GR+ A LF G +G GK + A + Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P + C+ + + + A D L + + N VD IR + Sbjct: 73 TPDPCQACSQ------CRAITAGASLDVLEIDAASNT---------GVDNIRELIERAQF 117 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 118 APVNSRYKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRF 177 Query: 185 KFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F + +++ L Q I V + G + A ++L Sbjct: 178 DFRRIPLDDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQ 227 >gi|22298675|ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] Length = 603 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 120/329 (36%), Gaps = 34/329 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G I L+Q R+ A LF G +G GK + A + + Sbjct: 9 KYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSLNCLRSS 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +Q+A+ D + + + + VD IR + Sbjct: 69 KPTPDPCGQC------EVCRQVANGTSLDVIEIDAASHT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ +A NALLK+LEEPP +V+FIL + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L+ + +I V + G + A +L Sbjct: 174 RFDFRRIPLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERI 233 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKSAKAA 289 ++ + Q ++Q+ + +D + + IL+ + + Sbjct: 234 TVEQVWQLTGAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDL 293 Query: 290 ALSGQLEEADQI----AQIYFSLVKRVHA 314 L+ + + + A+ + +L+ A Sbjct: 294 LLAKTVPQRRDLVALTAETWQALIALAEA 322 >gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] Length = 583 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 272 >gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC 35310] gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC 35310] Length = 593 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDAVVGQSALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C + ++ L + N +V+ I+ + Sbjct: 66 LNPTADGEACNECES------CQAFNEQRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIIS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ ++ L +Q I D+ + + A G + A+ + Sbjct: 171 RCQIYDFERMATTDIINHLKNVAQQEGITYEDAALNIIAEKADGGMRDALSVFDQAA 227 >gi|307704666|ref|ZP_07641566.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK597] gi|307621775|gb|EFO00812.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis SK597] Length = 551 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSETEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVTKALSCLNLLFD 273 >gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] Length = 583 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYKDTLAITGYADQV-KIEALFLDLLNRKTSQALEEVEELL 272 >gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1] Length = 583 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 272 >gi|291297392|ref|YP_003508790.1| DNA polymerase III subunits gamma and tau [Meiothermus ruber DSM 1279] gi|290472351|gb|ADD29770.1| DNA polymerase III, subunits gamma and tau [Meiothermus ruber DSM 1279] Length = 641 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 29/304 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R P + G E +++ L SGR+ A LF G +G+GK + A V + Sbjct: 4 LYRQARPTTFDEMVGQEHVKEVLLNALRSGRLAQAYLFSGPRGVGKTSSARLIAQAVNCS 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P C + + D L + + N +V+++R +R Sbjct: 64 SDP--RPCGTCEG------CRLVREGRHPDVLEIDAASNN---------SVEDVRELRER 106 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L+ +V+++D M+++A NALLK+LEEPP V+FI + + TI SR Sbjct: 107 ILLSPILSQHKVVILDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRT 166 Query: 182 LSIKFNSLSENNLYKALEQLKI----MGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F LSE + + L+++ V A G++ A +L + Sbjct: 167 QHFRFRRLSEAEIVEKLQRILAGLGREAEPPALQLVARLADGAMRDAESLLDRLLTLEGP 226 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + D + +P QE + +A+ L + A + + + A L Sbjct: 227 LTLKQTEDALGLPPQE----ALFALAEALDKGQLRPALEQAQQLYTQGFAARTLAQGLLE 282 Query: 294 QLEE 297 L Sbjct: 283 ALRA 286 >gi|260655563|ref|ZP_05861051.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi E3_33 E1] gi|260630011|gb|EEX48205.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi E3_33 E1] Length = 648 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G +++ SGR+ HA LF G +G GK T+ A V Sbjct: 5 LYRRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAVNCT 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + D + + + N TVDE+R ++ Sbjct: 65 ARNGAEPCGQCQS------CLAIRDGRSLDVVEIDGASNN---------TVDEVRELKAN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L + G W+V +ID V ++ +A NALLK+LEEPP++V+FIL + + +TIRSRC Sbjct: 110 VGLASFGGNWKVYIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 I F+ LS ++ L+ + + + ++ G + + +L Sbjct: 170 QHIPFHGLSVPDIVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQ 222 >gi|224417692|ref|ZP_03655698.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|253827041|ref|ZP_04869926.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|253510447|gb|EES89106.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] Length = 586 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 142/359 (39%), Gaps = 34/359 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P+ L G E + + LS S R+ HA LF G +G GK + +A + Sbjct: 7 LALKYRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFARALQCE 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + D + L + + K +D+IR + Sbjct: 67 KGPKAKPCGVCA----NCIAANPHKMRHIDIIELDGASSRK---------IDDIRDLIEQ 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 114 TKYHPNMGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 173 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 +F +SE N+++ L+ + I D + + + GS+ + +L + Sbjct: 174 QHFRFKRISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNY 233 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------IEFILKEICKS 285 + S +++ + Q + + +E+ +D++ + E +L E+ Sbjct: 234 NITADSCANMLGLINP----QSLNMLFEEIFKKDKESLLKHIEGFSEYECEMLLDEMAIF 289 Query: 286 AKAAALSG-QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 K L G + I +F ++ + D ++ + K E + D Sbjct: 290 LKEKLLRGEDTRYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKMLEALKIQEID 348 >gi|262066195|ref|ZP_06025807.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] gi|291380102|gb|EFE87620.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] Length = 482 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 82/351 (23%), Positives = 150/351 (42%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N P C K + D + + + N ++DEIR ++ Sbjct: 65 NLGEDGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +L ++ L+ + + D + + GS+ +I IL I+ Sbjct: 170 CQRYDFKALDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILER---LIV 226 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 ++ + I++ E L +++ D+LL++ + + L IE K++ Sbjct: 227 TANGNEINLKIAEDTLGVTPSSRIKIFLDKLLNESEYNIINELEALANESFDIELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +L+ D+ +I ++ ++ F + D++ + + +++ Sbjct: 287 AKYCKNAIVKNELD-IDKGLKIISTIYDVINKFK-FEDDKKLVGYVIVADI 335 >gi|54298738|ref|YP_125107.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Paris] gi|53752523|emb|CAH13955.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Paris] Length = 556 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 23/260 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + D + + + V++ R + Sbjct: 66 KGITSEPCLHCDT------CVAIEQGRYIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRC Sbjct: 111 IQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L L + + L++ ++ D + AA GS+ A+ +L D+ I+ Sbjct: 171 LQFNLKHLPAELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLL----DQAIT 226 Query: 238 SYIDLIHIPRQEYALQKMQQ 257 S + + L QQ Sbjct: 227 SCETKLLASDVKILLGHTQQ 246 >gi|322376416|ref|ZP_08050909.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334] gi|321282223|gb|EFX59230.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334] Length = 551 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQA 223 >gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] Length = 583 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 272 >gi|291286041|ref|YP_003502857.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio acetiphilus DSM 12809] gi|290883201|gb|ADD66901.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio acetiphilus DSM 12809] Length = 534 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 111/284 (39%), Gaps = 34/284 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R P L G E + L GR+ HA LF G +G+GK + A V Sbjct: 6 LARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTSAARILAKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ S D + + + N +DEIR +R Sbjct: 66 EPVGSNPCNKCEN------CTEITSGTSMDVVEIDGASNR---------GIDEIRELREA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + +A NALLK+LEEPP V+FIL + + +TI SRC Sbjct: 111 VRFLPVKCKFKVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + +Y +L + I + V + G + ++ +L D+II+ Sbjct: 171 QKYDFNKIPFEIMYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLL----DQIIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE 281 + + LL +K D L I+KE Sbjct: 227 FTGGKLDEQSTSF-----------LLGFSEKSLVDKLFALIIKE 259 >gi|167470065|ref|ZP_02334769.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis FV-1] Length = 583 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 43/328 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE+ +I + AA GS+ A+ + D+ + Sbjct: 170 CLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSL----TDQAV 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S + ++ L + D + + + SA A + Q+E Sbjct: 226 SMGQGQVTTVT----------VSQMLGTLDDEQPLAIIEALV------SADGARVMAQIE 269 Query: 297 EADQIAQIYFSL----VKRVHAFSMYNL 320 +A + +L + +H +M L Sbjct: 270 QAASRGVDWENLLVESLSLLHKIAMVQL 297 >gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] Length = 567 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 40/320 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + +GR+ HA LF G +G GK + A + Sbjct: 6 LYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMGLNCA 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + + D + + + N +DEIR +R Sbjct: 66 QGPTPEPCGRCES------CRSIVAGSSMDVIEMDAASNR---------GIDEIRELRDR 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++L G +V +ID V + A NALLK LEEPP+ V+F+L + +L TI SRC Sbjct: 111 VNLAPAAGRAKVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAI------------ 225 S F L + L ++ I + A+ GS A Sbjct: 171 QSFDFRRPGVGTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEG 230 Query: 226 --------KILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 ++L ++++ D +H R AL+ + +++ E Q A + + Sbjct: 231 RVTVALVRELLGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQ-FAAELISHL 289 Query: 278 ILKEICKSAKAAALSGQLEE 297 + + A AAL+ E Sbjct: 290 RVLMLLPHAPEAALAEAGPE 309 >gi|209545026|ref|YP_002277255.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] gi|209532703|gb|ACI52640.1| DNA polymerase III, subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] Length = 687 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 77/323 (23%), Positives = 127/323 (39%), Gaps = 30/323 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L + GR+ HA + G +G+GK T A + Sbjct: 59 VLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALNC 118 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + + D L + + VD++R Sbjct: 119 VGPDGTGGPT----ADPCGVCANCVAILADRHPDVLEMDAASRT---------GVDDVRE 165 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I G +V +ID V ++RNA NALLK+LEEPP +V F+ + + T+ Sbjct: 166 IIEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTV 225 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + +++L ++ + AA GSV + +L D Sbjct: 226 LSRCQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLL----D 281 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ + A +++AD L D+ FD L E +L A A Sbjct: 282 QAIAQG----SVEGDGAAPIGAERVADMLGLADRGRVFDLL-EAVLAGQPDRALAITDEA 336 Query: 294 QLEEADQIAQIYFSLVKRVHAFS 316 AD + + +++ VH S Sbjct: 337 HARGAD-LGVMLGDVLELVHTVS 358 >gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] Length = 587 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 10 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 70 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 175 QRYNFKRISNDQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 235 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 276 >gi|311748354|ref|ZP_07722139.1| DNA polymerase III [Algoriphagus sp. PR1] gi|311302776|gb|EAZ81111.2| DNA polymerase III [Algoriphagus sp. PR1] Length = 382 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 30/291 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G E I L + + A LF G +G+GK T A + Sbjct: 7 VSARKYRPADFKSVVGQEHITTTLKNAIKNNHLAQAFLFCGPRGVGKTTCARILAKTINC 66 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N + C +++ + L + N +VD+IR + Sbjct: 67 ENRQDDQEACGECES------CVSFKNNSSFNIYELDAASNN---------SVDDIRNLV 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI S Sbjct: 112 DQVRYAPQKGQYKVYIIDEVHMLSNQAFNAFLKTLEEPPKYAIFILATTEKHKIIPTILS 171 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YD 231 RC FN + +++ L E+ + + + A G++ A+ I Y Sbjct: 172 RCQIFDFNRIQIDHISNHLKYIAEKESVDFEEEALRLIATKADGALRDALSIFDLIVTYS 231 Query: 232 CDKIIS--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 K ++ ID +HI +Y ++ D L+ +D E + K Sbjct: 232 AGKKVTYHETIDNLHILDYDYYF----KVVDALIEEDLSKVLLIFDEILKK 278 >gi|322412086|gb|EFY02994.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 559 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 128/318 (40%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNQCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID + ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEIHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + + + L++ + + + A G + A+ IL Sbjct: 170 QRFEFKAIKQKAIREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILD-------- 221 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + Q IA+E+ +A D ++ +++ A AL + Sbjct: 222 ---QALSLSPDD---QVTMAIAEEITGSISMVALDDYVQHLMENQATQA-LQALETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ + Sbjct: 275 GKSMSRFATDLLTYLRDL 292 >gi|169833967|ref|YP_001694317.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae Hungary19A-6] gi|168996469|gb|ACA37081.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae Hungary19A-6] Length = 551 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +++ +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKIYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|237743482|ref|ZP_04573963.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] gi|229433261|gb|EEO43473.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] Length = 482 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 127/314 (40%), Gaps = 37/314 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKAGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL S + +FD IE K++ Sbjct: 230 GKEINLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELESLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLE 296 K K A L +L+ Sbjct: 287 AKYCKNAILKKELD 300 >gi|319938988|ref|ZP_08013352.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus 1_2_62CV] gi|319812038|gb|EFW08304.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus 1_2_62CV] Length = 554 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ + L+Q I + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKTKDIVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q I++E+ A D + +L A L + Sbjct: 226 LTQDN----------QLTTAISEEITGSISLGALDAYVAAVLAHDTSVALK-NLDVIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ Sbjct: 275 GKNMARFVTDLLQYFRDL 292 >gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] Length = 583 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 272 >gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] Length = 587 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 10 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 70 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 175 QRYNFKRISNDQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 235 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 276 >gi|208780606|ref|ZP_03247945.1| DNA polymerase III, subunits gamma and tau, putative [Francisella novicida FTG] gi|208743581|gb|EDZ89886.1| DNA polymerase III, subunits gamma and tau, putative [Francisella novicida FTG] Length = 546 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 227 FCSGELKQ-------AQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDKIAEIWFA 291 >gi|149197778|ref|ZP_01874827.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa HTCC2155] gi|149138999|gb|EDM27403.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa HTCC2155] Length = 890 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 134/352 (38%), Gaps = 36/352 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + I L+ + R+ HA +F G +GIGK T +A + Sbjct: 5 VLARKWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAKALNC 64 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P C ++ + D + + + N +VD+IR+IR Sbjct: 65 ETPRADLNPCGQCTN------CTEITQGSSIDVIEIDGASNN---------SVDDIRQIR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 T +++ +ID V ++ A NALLK+LEEPP + F+ + +L TI S Sbjct: 110 EGAQYTPARCPYKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC ++ + N + L+ + + DS + + A G + + IL D++ Sbjct: 170 RCQRLELKPIPRNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSIL----DQM 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS I Q+ ++ + IL+ + A+ Sbjct: 226 ISFCSGNEIISEQDVI---------DVFGMSSSNELKLIASAILQNQAPALIE-AIDTLA 275 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 + A + Q+Y L + + L+ Q +L E + + Sbjct: 276 KAARNMEQLYSELFQLFRDVMIL-LESPQQARSIL-DLEEVEIQQLYELAQL 325 >gi|262200018|ref|YP_003271227.1| DNA polymerase III subunits gamma/tau [Haliangium ochraceum DSM 14365] gi|262083365|gb|ACY19334.1| DNA polymerase III, subunits gamma and tau [Haliangium ochraceum DSM 14365] Length = 649 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 38/333 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ + R+HHA LF G +G+GK T + Sbjct: 5 VLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVHHAFLFCGPRGVGKTTAARILGKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + + D+ + + N +D IR + Sbjct: 65 ERGPTAEPCGSC------VACETITNGTAVDYFEMDGASNR---------GIDAIRELTE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V +ID V + A NALLK+LEEPP V F+L + + +TI SR Sbjct: 110 AVRYQPAVLRKKVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + L + L ++ +I + + GSV ++ + CD++I Sbjct: 170 CQRYDFKLVPAPKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSL----CDQVI 225 Query: 237 ----------SSYIDLIHIPRQEYALQKMQQIAD-----ELLSQDQKIAFDFLIEFILKE 281 S +++ + + + +A+ L + + A + + Sbjct: 226 SYVGTSNIGESDVAEVLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARA 285 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHA 314 I + + A+ EA+ + + Sbjct: 286 IVRYLRDLAVMQVAPEAEGLIDGSEEEAAELRE 318 >gi|118578743|ref|YP_899993.1| DNA polymerase III, subunits gamma and tau [Pelobacter propionicus DSM 2379] gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379] Length = 569 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 130/345 (37%), Gaps = 33/345 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L SGR+ HA LF G +G+GK + A + Sbjct: 9 VLARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHAFLFSGARGVGKTSTARILAKALNC 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P ++ D + + N VD+IR +R Sbjct: 69 ERGVSTEPCNTC------PLCIEITKGTSTDVFEIDGASNT---------GVDDIRELRD 113 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ NA NALLK+LEEPP+ V FI + + TI SR Sbjct: 114 NAKYLPSHSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSR 173 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + L Q+ I DS + GS+ ++ Sbjct: 174 CQRFDFKRIPLAKIIGRLRQIADAEGISINDSALALIARKGDGSMRDSLTAFDQVLACCG 233 Query: 237 SSYIDLIHIPR-QEYALQKMQQIADELLSQDQKIAFDFL---------IEFILKEICKSA 286 S+ D + + I+ + + D + + + +E+ + Sbjct: 234 SNVSDEDTATLIGAVDRRLLANISAAIFAADTQAVLAGIRQVDEVGYNLRQFCQELIEQL 293 Query: 287 KAAALSGQLEEADQIAQI----YFSLVKRVHAFSMYNLDRRQMIF 327 + + + + ++I + L ++ + FS ++ RR + Sbjct: 294 RNLMVVSSVRKPEEILDLSAPELDDLRRQANGFSSQDIQRRLTLL 338 >gi|167626879|ref|YP_001677379.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596880|gb|ABZ86878.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 551 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CLAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S++++ L+ + I + D++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQSDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +++Q+ + S++ + +IE + + K L+ + Sbjct: 227 FCSGELKQ-------AQIKQMLGIIDSEEVYNIIEAIIENNPSAVLPAVKNLTLTESNAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|148361067|ref|YP_001252274.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila str. Corby] gi|296108398|ref|YP_003620099.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila 2300/99 Alcoy] gi|148282840|gb|ABQ56928.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila str. Corby] gi|295650300|gb|ADG26147.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila 2300/99 Alcoy] Length = 556 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 23/260 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + D + + + V++ R + Sbjct: 66 KGITSEPCLHCDT------CVAIEQGRYIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRC Sbjct: 111 IQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L L + + L++ ++ D + AA GS+ A+ +L D+ I+ Sbjct: 171 LQFNLKHLPAELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLL----DQAIT 226 Query: 238 SYIDLIHIPRQEYALQKMQQ 257 S + + L QQ Sbjct: 227 SCETKLLASDVKMLLGHTQQ 246 >gi|320354016|ref|YP_004195355.1| DNA polymerase III subunits gamma and tau [Desulfobulbus propionicus DSM 2032] gi|320122518|gb|ADW18064.1| DNA polymerase III, subunits gamma and tau [Desulfobulbus propionicus DSM 2032] Length = 648 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 132/354 (37%), Gaps = 38/354 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R P + G + + + L R+ AL+F G +G GK TL A + Sbjct: 5 VLARKSRPQTFAEVVGQKAVVRTLQNALAQQRVAQALIFSGVRGTGKTTLARIMAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + +A A D + + N + EIR ++ Sbjct: 65 EQGPATEPCNLCRS------CRDIADGASIDLQEVDGASNR---------GIQEIRELKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++I+ID V + A NALLK+LEEPP V F+ + + TI SR Sbjct: 110 KIRFMPTSSRYKIIIIDEVHMLTTEAFNALLKTLEEPPDHVYFMFATTELHKVPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L EQ + + D + A GSV + +L D+I Sbjct: 170 CQRYELKRLGHRELAAHFTRLAEQEGVRMEPAAVDMIVREAGGSVRDGLSLL----DQIF 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFIL---------KEI 282 S + L Q + + LL+ D + L + L ++ Sbjct: 226 SYCGQEVRAEEVVEVLGLVSHQLIADLGSALLNGDLGAVYVLLDQMYLHGTDIKRFSNDL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM-YNLDRRQMIFHLLSKARE 335 + + + + + Q ++ + + Y+L+ +F+LL + E Sbjct: 286 LQWFRDLVVCKVSKHSGQFLEVTEDEQAALEQTAASYSLETISALFNLLLEGLE 339 >gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM 6192] gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM 6192] Length = 510 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 122/288 (42%), Gaps = 28/288 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G E + L+ +GR+ HA LF G +G+GK + A + Sbjct: 5 VTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K+++ D + + + N +V+++R IR Sbjct: 65 EQGVTPEPCGTCTS------CKEISQGTAIDVIEIDGASNT---------SVNDVRVIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ +A NALLK++EEPP V+FI + + +TIRSR Sbjct: 110 EVLFAPGKARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S + L ++++ + ++ A GS+ A + D+++ Sbjct: 170 CQQYHFRLISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLF----DQVV 225 Query: 237 SSYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S LI +++Q + + ++ K A D + E ++ Sbjct: 226 SFSEGRLSYALIQEKLGLVGFERLQAVVEACAREEVKGALDLVHEILM 273 >gi|86749797|ref|YP_486293.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris HaA2] gi|86572825|gb|ABD07382.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris HaA2] Length = 346 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 109/334 (32%), Positives = 168/334 (50%), Gaps = 9/334 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH E+ L Y SGR+ HA L G QGIGKATL +R A VL + D Sbjct: 15 PRETTALFGHAAAEQALLDAYRSGRIAHAWLIGGPQGIGKATLAYRMARFVLAHRDPMAD 74 Query: 68 PVR---MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ + DP P V+ +A+ A L L S+N K G R VITVDE R F Sbjct: 75 AVQGAATLDLDPSHPVVRHVAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETIGFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N ++ANALLK +EEPPQ+ LF+LIS++ +L TI SRC + Sbjct: 134 TAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPARLLPTILSRCRKL 193 Query: 185 KFNSLSENN-LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 LS ++ + ALE + D+K A+ GSVARA+ +L D + L+ Sbjct: 194 MLRPLSVSDVIAAALEATDLSPGDAKLAEAAAASEGSVARALTLLGGDALTLQQKTTALL 253 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 +P + + + + + + D+ ++ + + I + + +L ++A Sbjct: 254 DSLPNVDP--RALHALGEAIGGTDRTT-LAAFVDGVDRWIAGRLRTGDANAELPRLARLA 310 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 +++ + + YNL+R+ ++F + E Sbjct: 311 EVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEA 344 >gi|257126791|ref|YP_003164905.1| DNA polymerase III subunits gamma and tau [Leptotrichia buccalis C-1013-b] gi|257050730|gb|ACV39914.1| DNA polymerase III, subunits gamma and tau [Leptotrichia buccalis C-1013-b] Length = 524 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 146/362 (40%), Gaps = 41/362 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAG--HVL 59 + R + P + G E + + + ++ HA LF G +G+GK T+ A + L Sbjct: 5 LYRKYRPQNFDEIAGQEFVLRAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAKGVNCL 64 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + + P C ++++ D + + + N +DEIR ++ Sbjct: 65 NSENVTDNPCGECEN------CREISQGISMDMIEIDAASNR---------GIDEIRELK 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ G ++ +ID V + + A NALLK+LEEPP V+FIL + I T+ S Sbjct: 110 EKINYQPVKGRKKIYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVIS 169 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F + + ++ K L E+ KI ++ D + + GS + I Sbjct: 170 RCQRYDFLPIDKKDIKKLLKNVAEKEKITIDEASLDLIYRKSEGSARDSFSIFEQVVSNF 229 Query: 236 ISSYIDLIHIPRQEYALQK--MQQIADELLSQDQKIAFDF---------LIEFILKEICK 284 + ID+ + +++ + + +++ DF +IE LK+ Sbjct: 230 NNEEIDITKTQNALGVVPDVILEEFLNLIKDGNKEKLVDFIDKIWEEGLIIETFLKDFSY 289 Query: 285 SAKAA-ALSGQLE---EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 K L D I+ I+F+L + Y D+R + + L+ + + Sbjct: 290 YLKEQFKKKTDLSVNFLLDTISAIFFTLNEF-----KYEEDKRLLGYVLIHELYKTQRKN 344 Query: 341 FR 342 R Sbjct: 345 LR 346 >gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902] gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902] Length = 625 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 111/304 (36%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 + P +L G E I L S R+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCQNSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ + +AS D + + + N VD IR + Sbjct: 71 GPTPEPCGTCD------LCRTIASGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L + L EQ I V + G + A +L Sbjct: 176 RFDFRRIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + Q++ +A + S + + + + A L+G L + Sbjct: 236 EANAVWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|254302055|ref|ZP_04969413.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322247|gb|EDK87497.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 484 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 230 GKEIDLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELENLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] Length = 503 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + ++ L + + + HA +F G +G GK T A + Sbjct: 7 VLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAKALNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +++ D + + + +DEIR+IR Sbjct: 67 -LSHDDKPCGKCES------CIAVDNNSHMDVIEIDAASYR---------GIDEIRKIRD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 S G+++V ++D + R A NALLK+LEEPP+ ++FIL + + TI SR Sbjct: 111 AASYRPTMGHYKVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 C F LSE + + L+++ K + AA G + A+ +L Sbjct: 171 CQVFTFKPLSEGQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERA 225 >gi|170025415|ref|YP_001721920.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis YPIII] gi|169751949|gb|ACA69467.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis YPIII] Length = 658 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 35/335 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +L + LE+ +I + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSMGQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 230 GQVTTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQIEQAASRGVDWENLLVESLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 K A L L+ A I L + Sbjct: 290 HKIAMVQLLPSMLDN--HYAAIEPRLRELARTLPP 322 >gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] Length = 587 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 10 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 70 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 115 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 174 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 175 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 235 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 276 >gi|254368386|ref|ZP_04984403.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|157121280|gb|EDO65481.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] Length = 546 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQTDIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSAN 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] Length = 639 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 120/322 (37%), Gaps = 31/322 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPRSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 81 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D++R I Sbjct: 82 QTDEIDQP--TIHMGEPGIHCQAIMEGRHVDVVEMDAASHT---------GIDDVREIIA 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP+ V F+ + + T+ SR Sbjct: 131 QVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPVTVLSR 190 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L ++ + + + AA GSV A+ + D+ I Sbjct: 191 CQRFDLRRVESATLMAHLTKIATAEHVEVDEDALRLIARAAEGSVRDALSL----TDQAI 246 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + Q + D L D+ D E+++K +A + Sbjct: 247 AHGAGAVT----------AQAVRDMLGLADRVRIIDLF-EYLMKGDAAAALKELRDQYVV 295 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 AD A + L H + Sbjct: 296 GADP-AVVLADLADFTHLVTTL 316 >gi|322392118|ref|ZP_08065580.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris ATCC 700780] gi|321145018|gb|EFX40417.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris ATCC 700780] Length = 554 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E I + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVIARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSIAQYKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LE+ I + + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIRDHIFYILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + +L + L+ +D A + L Sbjct: 230 ATLTTAVSEEITGTISLSALDNYVAALVQKDVTGALENL 268 >gi|256826358|ref|YP_003150318.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] gi|256689751|gb|ACV07553.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] Length = 796 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/351 (20%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAYLFSGPRGCGKTTSARILARCLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C D C + A D + + + + VD+ R +R Sbjct: 65 QGPTDSPCGEC--DSCQDLARGGA--GSVDVIEIDAASHG---------GVDDARDLREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S ++V +ID + NALLK +EEPP+ VLFI + ++ TIRSR Sbjct: 112 ASFGPAQSRYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L + L E+ I +V A GSV ++ Sbjct: 172 HHYPFRLVPPAVLQEYLAQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLIAGSDD 231 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L + +++ +D ++++ + QD + + L E Sbjct: 232 AGITLAGTTALLGFTDSELLDGVVDAYAAGDGASLFTTVERVVES--GQDPRRFVEDLSE 289 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + I +A L + L + L R + Sbjct: 290 RMRDLILVNAVPTGTEAVLPGVP--SDQLDRLRVQASGLGPAELSRASDVL 338 >gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] Length = 599 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP +C K ++ L + N +V+ I+ + Sbjct: 66 ENPSQDGEACNVCES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQIGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N + L+ + I D + A G + A+ I Sbjct: 171 RCQIYDFERMTVGNTIEHLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAA 227 >gi|271970480|ref|YP_003344676.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513655|gb|ACZ91933.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 727 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 124/352 (35%), Gaps = 40/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q SGR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 65 KGPTPDPCGECESC----VALAPTGPGHLDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + R NALLK +EEPP + F+ + ++ TI+SR Sbjct: 112 AFFAPVSARFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F + L +E++ K+ + V A GS ++ IL + Sbjct: 172 HHYPFRLIPPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSILDQLFAGSDE 231 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ--------------DQKIAFDFLIEF 277 + + L+ + + A +Q ++ A D L F Sbjct: 232 AGITYARAVSLLGYTDGDLLDDVIAAFAARDGAQVFQAVNRVIEGGHDPRRFAMDLLERF 291 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 I + AA SG L D+ A L + + L R IF+ Sbjct: 292 RDLVILANVPEAAGSGLL---DRPADELERLQAQAVSMGPAELTRAAEIFNA 340 >gi|256426033|ref|YP_003126686.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] Length = 634 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 107/290 (36%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G I L + ++ HA LF G +G+GK T A + Sbjct: 6 VSARKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 C+ + + L + N +VD+IR + Sbjct: 66 ENLQPDGEACNQCHS------CTSFNEGSSFNIHELDAASNN---------SVDDIRTLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G +++ +ID V ++ +A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRFAPQAGKYKIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F ++ + L+++ I V G + ++ L Sbjct: 171 RCQIFDFKRITIQDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ ++I +Y + M D +L QD A E + K Sbjct: 231 GGHLTYQNTLEHLNILDYDYFFRVM----DTVLQQDVATALLIFDEILQK 276 >gi|167750681|ref|ZP_02422808.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702] gi|167656360|gb|EDS00490.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702] Length = 743 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 20/280 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + E I L +G HA LF G +G GK T A V Sbjct: 5 LYRKYRSATFDEVISQEHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K +A+ D + + + N VD++R +R Sbjct: 65 SPVDGNPCGECES------CKAIAAG-CPDIIEMDAASNN---------GVDDVRALRDE 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK++EEPP V+FIL + + +TI SRC Sbjct: 109 VMYAPTVCRYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F+ + K L ++ + + + + G + A+ +L Sbjct: 169 QQFRFSRIDVEESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD 228 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + + +A + Q+ A L E Sbjct: 229 IDEETVRTTAGIAGTEHLFTLAQCIHEQNAPEALKILDEL 268 >gi|54295584|ref|YP_127999.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Lens] gi|53755416|emb|CAH16912.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila str. Lens] gi|307611624|emb|CBX01309.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila 130b] Length = 556 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 23/260 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +L G E I K L R+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + D + + + V++ R + Sbjct: 66 KGITSEPCLHCDT------CIAIEQGRYIDLIEIDGASKT---------RVEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V +++++ NALLK+LEEPP V FIL + + T+ SRC Sbjct: 111 IQYAPTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L L + + L++ ++ D + AA GS+ A+ +L D+ I+ Sbjct: 171 LQFNLKHLPAELINQQLQLILQEERLDFEIQALDILARAARGSMRDALSLL----DQAIT 226 Query: 238 SYIDLIHIPRQEYALQKMQQ 257 S + + L QQ Sbjct: 227 SCETKLLANDVKMLLGHTQQ 246 >gi|307708553|ref|ZP_07645018.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC 12261] gi|307615469|gb|EFN94677.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC 12261] Length = 551 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + L++ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIRYILDKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|134302702|ref|YP_001122670.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis WY96-3418] gi|134050479|gb|ABO47550.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. tularensis WY96-3418] Length = 546 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis F0319] Length = 604 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPTKEGEACNECES------CKAFTEGRSYNIFELDAASNN---------SVENIKTLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIINHLKAVAEKENIQYEEQALNIIAEKADGGMRDALSIFDQAA 227 >gi|146340770|ref|YP_001205818.1| DNA polymerase III subunit delta' [Bradyrhizobium sp. ORS278] gi|146193576|emb|CAL77593.1| putative DNA polymerase III, delta prime subunit [Bradyrhizobium sp. ORS278] Length = 346 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 174/337 (51%), Gaps = 9/337 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P LFGH + E L Y SGRM HA L G QGIGKATL +R A VL + D Sbjct: 14 HPRETTALFGHCEAEAALLSAYRSGRMAHAWLIGGPQGIGKATLAYRMARFVLTHRDPRA 73 Query: 67 APV---RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A V + D + +AS A L L S N K G RTVITVDE R F Sbjct: 74 AEVLAAESLHVDADDHVTRLIASEAHGGLLTLERSANDK-GVLRTVITVDETRETISFFG 132 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WR+ ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC Sbjct: 133 STAAVEGWRICIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIKSRCRR 192 Query: 184 IKFNSLSENN-LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + +LS + + A E + + G + A+ GSV+R + ++ D ++ + L Sbjct: 193 LSLRALSTEDVISAAAEAIGMDGGEPALREAAKASEGSVSRTLMLMGGDGLQLQTRTAAL 252 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +PR + ++ + D L + D+ +A ++ I + + + +A + +L ++ Sbjct: 253 LASLPRIDA--GELHALGDALGTSDR-VALASFLDSIERWVAERLRAGDPNAELPRLARL 309 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A+++ +V+ YNL+R+ ++F + E Sbjct: 310 AEVWEKIVRAARDTESYNLERKPLVFSVFGMLAEATR 346 >gi|254372143|ref|ZP_04987635.1| DNA polymerase III [Francisella tularensis subsp. novicida GA99-3549] gi|151569873|gb|EDN35527.1| DNA polymerase III [Francisella novicida GA99-3549] Length = 546 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDKIAEIWFA 291 >gi|118602478|ref|YP_903693.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567417|gb|ABL02222.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 529 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 144/356 (40%), Gaps = 45/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G +K L + +HH LF G +G+GK T+ A + Sbjct: 7 VLARKYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARILAKSINC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++ D + L + + VD +R I Sbjct: 67 EQGISSKPCDKC------ATCVEIDKGQSIDLIELDAASHT---------GVDNMRDILE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V +++N+ NALLK+LEEPP+ V F+L++ + T+ SR Sbjct: 112 NAQYMPSKNRYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSR 171 Query: 181 CLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + + L+ + + +S + GS+ A+ +L D+ I Sbjct: 172 CLQFTLQQLTHDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLL----DQSI 227 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S + + L + ++ L SQD K DF+ + S + L Sbjct: 228 SYGKGTVTNADIKAMLGLVHHDDIIKLTTHLFSQDAKAVIDFIKDL-------SRRGENL 280 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 S L++ SL ++ + N + + I +L ++ ++ + FY + Sbjct: 281 SNALKD-------LSSLFHKISISQIVNTESNKTIQNLSTQI---SNFDLQIFYQM 326 >gi|264677766|ref|YP_003277672.1| DNA polymerase III subunits gamma and tau [Comamonas testosteroni CNB-2] gi|262208278|gb|ACY32376.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni CNB-2] Length = 719 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 124/341 (36%), Gaps = 34/341 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRTFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + P +C ++ S D+ L + N VDE+ Sbjct: 65 QGLDGNGGITATPCGVC------AACTEIDSGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTHVLDKESVPAEPQALRLLSRAARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + L + ++ D L + + E + ++ Sbjct: 226 TDQAIAFGSGQLQEATVRQMLGSVDRSHVFRLIDALAQGHGRTVVEVSEELRHNGLSAAS 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + L+ + Q + +DR + Sbjct: 286 TLEEMCAVLQRMAVL-QAVPDMPLDASDPEAAEVDRLASLM 325 >gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. 18P13] Length = 530 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 107/283 (37%), Gaps = 19/283 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + I L SG+ HA LF G +G GK T +A + Sbjct: 5 LYRKWRPRTFDDVISQPHITTTLKNQIQSGKTAHAYLFTGSRGTGKTTCARIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P + C + + +L D + + + N VD+IR +R Sbjct: 65 HATDGNPCQQC------EICRDAEAFSLSDIIEIDAASNN---------GVDDIRELRDG 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T ++V +ID V ++++A NALLK +EEPP V FIL + + +TI SRC Sbjct: 110 AVYTPERCKYKVYIIDEVHMLSQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + ++ L + ++ + + + G + A+ +L + Sbjct: 170 QRFDFRRILPEDITARLLYIAGEEQLTLDEQAARLIARLSDGGMRDALSLLDQCAAYDSN 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +D + + + D + D A L E K Sbjct: 230 ITLDTVSAAAGIAGRDALFDLLDAMTQSDPAKAVRILDELYAK 272 >gi|319942677|ref|ZP_08016984.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319803760|gb|EFW00695.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 455 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 139/342 (40%), Gaps = 38/342 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G + + L++ GR+HHA LF G +G+GK T+ +A + Sbjct: 24 VLARKWRPHDFESIVGQDHVVTALTRALTEGRLHHAYLFTGTRGVGKTTISRIFAKALNC 83 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 K V +P + + D++ + + N +V+++ ++ Sbjct: 84 QGADGKGGV-TAHPCGVCEACRAIDEGRFVDYIEMDAASNR---------SVEDMTQLLE 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 G ++V MID V ++ A NA+LK+LEEPP+ V FIL + + T+ SR Sbjct: 134 RAMYAPTEGRFKVYMIDEVHMLSSTAFNAMLKTLEEPPEYVKFILATTDPQKVPVTVLSR 193 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + + LE + I + A GS+ A+ +L Sbjct: 194 CLQFTLRNMTPAGIVEHLEFILGKEGIEYERPGLRLIAEGARGSMRDALSLLDQAIAFSG 253 Query: 232 ---CDKIISSYIDLIH--------IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D + S + L +M ++ADE++ + ++F + + Sbjct: 254 GKVTDTAVRSMLGLSSANALSALLRALAAGDAAQMIRLADEMVVES--VSFGEALRGLAA 311 Query: 281 EICKSAKAA----ALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + K A A++ E ++A++ L +Y Sbjct: 312 MLHKIALLQRVKEAVAADDPEYPELAELAALLSPE--EVQLY 351 >gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 605 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 28 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 87 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 88 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 132 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 133 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 192 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 193 QRYNFKRISNDQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 252 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 253 KINYQDTLAITGYADQV-KIEALFLDLLNKKTSQALEEVEELL 294 >gi|326442330|ref|ZP_08217064.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 129/351 (36%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGEC--LSCRDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + + L + L + KI D V A GSV ++ +L D Sbjct: 173 HHYPFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVMDQLLAGATD 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEICK 284 + ++ + + + +L + + D + D AF+ + I + ++ + Sbjct: 233 EGVTYAMATALLGYTDGSL--LDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLE 290 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + + +A D + + + AF L R + + Sbjct: 291 RLRDLVILAAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVNA 341 >gi|303245250|ref|ZP_07331534.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio fructosovorans JJ] gi|302493099|gb|EFL52961.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio fructosovorans JJ] Length = 598 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 31/329 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G + I++ LS+ ++ A LF G +G+GK TL A + Sbjct: 9 KYRPQRFADVAGQDAIKRILSRAAAEDKIAPAYLFSGTRGVGKTTLARVLAKALNCESAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P +C+ +Q+ + D + + + + K V++ R+++ + Sbjct: 69 TAEPCNVCSQ------CRQITAGVSPDVIEIDAATHGK---------VEDARKLKEDVGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID ++ A NALLK+LEEPP +V FIL + + +TI SRC Sbjct: 114 APLQSRYKVFIIDEAHMLSTAAFNALLKTLEEPPARVTFILATTEAHKFPATIISRCQHF 173 Query: 185 KFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F L++ L L++ I + + GSV ++ +L + Sbjct: 174 LFKRLAQPELEVHLAGVLDREAIHYESTAVSLIARRGAGSVRDSMSLLGQVLALGGAELT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG-- 293 + ++ + Q+ + + + +QD + L + + K + L+G Sbjct: 234 EADARGVLGLAGQDIFFG----LIEAIHAQDGPAVVELLRQVLEKGLDIGFFLRELAGMW 289 Query: 294 -QLEEADQIAQIYFSLVKRVHAFSMYNLD 321 L Q Q S+V S LD Sbjct: 290 RNLFLLRQAGQKGLSVVDLPAEDSGLWLD 318 >gi|241767459|ref|ZP_04765151.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] gi|241361752|gb|EER58047.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] Length = 377 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 136/370 (36%), Gaps = 41/370 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA------CTDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLSHLTQVLAAENVPAEPQALRLLSRAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIAD----ELLSQDQKIAFDFL-----IEF 277 + + ++ + + ++ + Y + + +A ++ + + L +E Sbjct: 230 IAFGSGQLQEAAVRQMLGAVDRSYVFRLIDALAQGDGRTVVETSDALRINGLSAASTLEE 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + A A+ D + D Q+++ L R Sbjct: 290 MSAVLQRMAVFQAVPQMAGAVDADDPEASETARLAALMPA---DETQLLYSLCLHGRAEL 346 Query: 338 DLYFRDFYAI 347 L ++ A+ Sbjct: 347 GLAPDEYAAL 356 >gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] Length = 484 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 120/283 (42%), Gaps = 28/283 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + + L R+ HA LF G +G+GK ++ A + Sbjct: 10 VLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAKALNC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +A + D L + + N +D+IR +R Sbjct: 70 PHTQDGIPCGEC------EVCQNIAVGSDVDVLEIDGASNR---------GIDDIRSLRA 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +++ + +++ +ID V + + A NALLK+LEEPP V FI + + TI SR Sbjct: 115 NVNVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSR 174 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + EN++ L+Q+ ++ D V A GS+ + I D+++ Sbjct: 175 CQRFDFGYIEENSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIF----DQLL 230 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 S + +H + +++ ++ D L+ Q + +A Sbjct: 231 SFGESHLTAESVHRILGTASDERLIELIDALIEQKRDVALTHF 273 >gi|309800115|ref|ZP_07694307.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis SK1302] gi|308116256|gb|EFO53740.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis SK1302] Length = 554 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 125/320 (39%), Gaps = 38/320 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEIVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQEGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSIAQYKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LE+ I + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIRTQDIRDHIFHILEKEGIDYESEAVEIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL-- 295 D + +++E+ I+ L ++ K A + L Sbjct: 226 LTQDA----------RLTTAVSEEITG---TISLSALDNYVAALAQKDVTRALENLNLIF 272 Query: 296 EEADQIAQIYFSLVKRVHAF 315 + + + L++ + Sbjct: 273 DNGKSMTRFVTDLLQYLRDI 292 >gi|328909980|gb|AEB61576.1| DNA polymerase III (gamma and tau subunits) [Bacillus amyloliquefaciens LL3] Length = 546 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 139/346 (40%), Gaps = 49/346 (14%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E I K L + HA LF G +G GK + +A V + P C Sbjct: 1 MVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPVEEPCNEC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K + + ++ D + + + N VDEIR IR + + ++V Sbjct: 60 -----AACKGITNGSISDVIEIDAASNN---------GVDEIRDIRDKVKFAPSAVTYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ A NALLK+LEEPP +FIL + I TI SRC F ++ Sbjct: 106 YIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 165 Query: 194 LYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CDKI---------- 235 + + + ++ + D + AA G + A+ +L D++ Sbjct: 166 IVGRMKIIVDAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFSGDELAVDDALLITG 225 Query: 236 ------ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 I +H + AL+ + ++ + +D + +I + + A A Sbjct: 226 AVSQHYIGKLASALHRKQVSEALETLNELLQQ--GKDAAKLIEDMIFYFRDMLLYQA-AP 282 Query: 290 ALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 L G LE+ ++ +++ L + A ++Y + +L+K+ + Sbjct: 283 DLEGVLEKV-KVDEMFRDLSGEIPAPALYEM------IDILNKSHQ 321 >gi|302872503|ref|YP_003841139.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor obsidiansis OB47] gi|302575362|gb|ADL43153.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor obsidiansis OB47] Length = 534 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 132/339 (38%), Gaps = 38/339 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + + I K L ++ HA +F G +G GK T + V Sbjct: 5 LYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D L + + N +V+++R+IR Sbjct: 65 NPKDGNPCNEC------EVCRSILDEKTLDVLEIDAASNT---------SVNDVRQIRDE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK++EEPP LFIL + + +TI SRC Sbjct: 110 VRYPPSMCKKKVYIIDEVHMLSTGAFNALLKTIEEPPSHALFILATTDIQKVPATILSRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S ++Y+ L+++ I D+ + A G++ A+ IL D Sbjct: 170 QRFDFKRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDE 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 +L+ + E + + + ++ K+ E + ++ Sbjct: 230 HITYKFVANLLGVTSTEIVKDFIAAVVENDSNKGLKVVNRLWDEGMD-----------VN 278 Query: 293 GQLEEADQIAQ--IYFSLVKRVHAFSMYNLDRRQMIFHL 329 LEEA ++ + + L + M D + + ++ Sbjct: 279 TFLEEAVKLLRSALILRLGAKEVLIDMLE-DDKAFVINI 316 >gi|256846388|ref|ZP_05551845.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] gi|256718157|gb|EEU31713.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] Length = 484 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 230 GKEIDLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELENLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|118589861|ref|ZP_01547265.1| DNA polymerase III subunit delta' [Stappia aggregata IAM 12614] gi|118437358|gb|EAV43995.1| DNA polymerase III subunit delta' [Stappia aggregata IAM 12614] Length = 353 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 165/334 (49%), Gaps = 7/334 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD---F 64 P RL GH E+ L + Y S R+HHA + G +GIGKATL FR+A V+ NPD Sbjct: 22 PHERDRLIGHAKTEQALLEAYRSERLHHAWILGGPKGIGKATLAFRFARFVIANPDRFGP 81 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 A R P +Q+ + + L+L + K+ +++ + VDE+RR F Sbjct: 82 EVASARDLAVMQDHPVARQLKAGGHPNVLHLRRPWDDKSKRFKADLPVDEVRRTVSFFGT 141 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA+ WR+ ++D D MN ++ANALLK LEEPPQ+ LF+++SHA +L TIRSRC + Sbjct: 142 TASAKAWRICIVDAADDMNISSANALLKILEEPPQRCLFLVLSHAPGRLLPTIRSRCRRL 201 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDF--VKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L+E + + L+ L S D + + A GS+ AI +L D I L Sbjct: 202 DLDPLTEEEVAQGLQDLSGGSVASSDDLRELALTADGSLRSAITLLSGDGLAIAKGVRQL 261 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 P Q L + +AD + ++ Q ++ + + + L+ + +A I Sbjct: 262 ADRPHQ-LDLAAVHALADLVAARGQSDNWESFQHIMQIWLHDRMRR-NLANGVRDAHGIV 319 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 +++ + K + NLD++Q++ R Sbjct: 320 ELWEKMNKAIRDADALNLDKKQVVLDFFFALRAA 353 >gi|322375394|ref|ZP_08049907.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300] gi|321279657|gb|EFX56697.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300] Length = 554 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNNCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ ++ + I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDIKDHIQTILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + ++ + I +L + L QD A D L Sbjct: 230 NALTTAISEEIT---GTISLSALDDYVAALSQQDVSKALDSL 268 >gi|315613323|ref|ZP_07888232.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis ATCC 49296] gi|315314558|gb|EFU62601.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis ATCC 49296] Length = 552 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNNCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + ++ + I +L + L Q+ A D L Sbjct: 230 NALTTAISEEIT---GTISLSALDDYVAALAQQEVPKALDSL 268 >gi|157150866|ref|YP_001450197.1| DNA polymerase III subunits gamma and tau [Streptococcus gordonii str. Challis substr. CH1] gi|262282525|ref|ZP_06060293.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA] gi|157075660|gb|ABV10343.1| DNA-directed DNA polymerase III [Streptococcus gordonii str. Challis substr. CH1] gi|262261816|gb|EEY80514.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA] Length = 556 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICKAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSMAKHKVYIIDEVHMLSTGAFNALLKTLEEPTKNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ +E Q I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIAHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVAALDNL 268 >gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis DSM 16608] gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis DSM 16608] Length = 601 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K + ++ L + N +V+ I+ + Sbjct: 66 EHPTADGEACNECES------CKAFSEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N+ L E+ I + + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNIISHLKSVAEKENIQYEEEALNVIAEKADGGMRDALSIFDQTA 227 >gi|237739475|ref|ZP_04569956.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] gi|229423083|gb|EEO38130.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] Length = 485 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N P C K + D + + + N ++DEIR ++ Sbjct: 65 NLGEDGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +L ++ L+ + + D + + GS+ +I IL I+ Sbjct: 170 CQRYDFKALDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILER---LIV 226 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 ++ + I++ E L +++ D+LL++ + + L IE K++ Sbjct: 227 TANGNEINLKIAEDTLGVTPSSRIKIFLDKLLNESEYNIINELEALANESFDIELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K + + +L+ D+ +I ++ ++ F + D++ + + +++ Sbjct: 287 AKYCKNSIVKNELD-IDKGLKIISTIYDVINKFK-FEDDKKLVGYVIVADI 335 >gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens BL2] Length = 1148 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 122/354 (34%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C P + +A+ D + + + + VD+ R +R Sbjct: 65 KGPTPVPCGEC------PSCEDLANGGPGSLDVVEIDAASHN---------GVDDARDLR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V ++D + NALLK +EEPP + FI + ++ TIRS Sbjct: 110 ERAIYAPARDRYKVFILDEAHMVTSQGFNALLKIVEEPPPHIKFIFATTEPEKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVAR------------ 223 R F + L +E L + V A GSV Sbjct: 170 RTHHYPFRLVPPEALGNYMEDLCNREGVQVAKGVLPLVVRAGGGSVRDTLSVLDQLIAGS 229 Query: 224 ---------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 AI +L Y D ++S +D + ++++ + QD + + L Sbjct: 230 GPDGVDYAGAIALLGYTPDSLLSDIVDAFSAGDGGGVYRAVERVIES--GQDPRRFVEDL 287 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 +E + I +A A L E L + F L R + + Sbjct: 288 LERMRDLIVINAAPEAAHAFLPEVPP--DRLERLTLQARGFGQGELSRAADLLN 339 >gi|328956232|ref|YP_004373565.1| DNA polymerase III, subunits gamma and tau [Coriobacterium glomerans PW2] gi|328456556|gb|AEB07750.1| DNA polymerase III, subunits gamma and tau [Coriobacterium glomerans PW2] Length = 731 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 73/324 (22%), Positives = 112/324 (34%), Gaps = 37/324 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + G + + L GR HA LF G +G GK T+ A +L Sbjct: 4 LYRTYRPLTFDSVVGQDHVVSTLEHAIAEGRCSHAYLFCGPRGTGKTTMARILAKALLCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 C PD +A D L + VD +R I Sbjct: 64 RSEGS---GGCMPDGTCAECSLIADGTHPDVYELDAASRT---------GVDNVREEIIG 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G ++ +ID V + A NALLK+LEEPP V+F+L + I TI SR Sbjct: 112 SVNFAPVRGSHKIYIIDEVHMLTTAAFNALLKTLEEPPAHVVFVLCTTDPHKIPETILSR 171 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S ++ L + + + V A G + A+ L Sbjct: 172 CQRFDFRRISCADIVARLALICDAEGFERDEEALEIVARHARGGMRDALSTLE------- 224 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA--ALSGQ 294 L Q + E+ S L EF + A++ Q Sbjct: 225 ----QLSVFGNGSVRAQDAHTLLGEVAS-------SVLTEFSHGIASRDVVGLFEAVAAQ 273 Query: 295 LEEADQIAQIYFSLVKRVHAFSMY 318 +E + ++ LV V M Sbjct: 274 IEGGGDLLELTRDLVAHVRDVYML 297 >gi|187932244|ref|YP_001892229.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. mediasiatica FSC147] gi|187713153|gb|ACD31450.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp. mediasiatica FSC147] Length = 546 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|149194845|ref|ZP_01871939.1| DNA polymerase III subunits gamma and tau [Caminibacter mediatlanticus TB-2] gi|149135004|gb|EDM23486.1| DNA polymerase III subunits gamma and tau [Caminibacter mediatlanticus TB-2] Length = 487 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 140/343 (40%), Gaps = 30/343 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + + G + I + L S R+ +A LF G +G GK T ++ + Sbjct: 2 VLALKYRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQC 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S +P C K + D + + + N K +++IR + Sbjct: 62 EKGISSSPCEECES------CKLANENRHIDIIEMDAASNRK---------IEDIRELIE 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V + A NALLK+LEEPP+ V FI+ + + +TI SR Sbjct: 107 HTKYKPSISRFKIFIIDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSR 166 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 +FN + E + L+ + + D + +A GSV ++ +L + Sbjct: 167 VQHFRFNKIPEKEIESFLQKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLLDQAIAYSN 226 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD---ELLSQDQKIAFDFLIEFILKEICKSAKA 288 + + ++++ + E + + I D + + + K D+ IE I+ EI K Sbjct: 227 YNITLDKVVEMLGVINPEIISKIFKLIFDGDKKEIIEIIKQIKDYDIESIIDEIILYLKE 286 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 A G L Q +F+++ Y D + I L+ Sbjct: 287 AMFYGNLPLITM--QRFFNIISDTKELIKYQNDN-EFILSLMF 326 >gi|326799758|ref|YP_004317577.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21] gi|326550522|gb|ADZ78907.1| DNA polymerase III, subunits gamma and tau [Sphingobacterium sp. 21] Length = 607 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 29/288 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + I L + ++ A LF G +G+GK T A + Sbjct: 18 VSARKYRPSTFETVVGQQHITGTLKNAIKNSQLAQAFLFCGPRGVGKTTCARILAKTINC 77 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S+ C+ K + L + N +VD+IR + Sbjct: 78 QHLSSEIEACGTCDS------CKSFQNGNSFSIHELDAASNN---------SVDDIRSLI 122 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + TG +++ +ID V ++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 123 EQVRIPPQTGKYKIYIIDEVHMLSTQAFNAFLKTLEEPPAYAIFILATTEKHKILPTILS 182 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + ++ L + + + A G + A+ + Sbjct: 183 RCQIFDFNRIKVEHIAGHLANIANKEGVAYDQDGLHLIAQKADGGLRDALSMFDQIVSFS 242 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 + + + ID ++I +Y ++ D + S++ A E + Sbjct: 243 NKNVSYQAVIDNLNILDYDYYF----KLTDAIFSENSVNALLVFDEVL 286 >gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces brasiliensis DSM 5305] gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces brasiliensis DSM 5305] Length = 593 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 128/326 (39%), Gaps = 32/326 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L + R+ HA LF G +G+GK ++ A + Sbjct: 10 VLARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAYLFTGARGVGKTSMARILAKALNC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +++ + D + + + N +D+IR +R Sbjct: 70 TNSQDGNPCNQC------ELCQAISTGSDVDVMEIDGASNR---------GIDDIRSLRA 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + + ++ +ID V + + A NALLK+LEEPP V F+ + + TI SR Sbjct: 115 NVGIRSMRTRVKMYIIDEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSR 174 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F+S+ + + L ++ I D V A GS+ + + D+++ Sbjct: 175 CQRFDFSSIETQKISERLAEIAASEGIEVAPEAVDLVARRAGGSMRDSQSLF----DQLL 230 Query: 237 SSYIDLIHIPRQEYALQKM--QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 + I L Q++ + + S D L E + ++++ G Sbjct: 231 AFGGARIEAADVNQLLGTAGDQRLLNLIESAHSGQQADLLAE-----VDQASREGVQLGN 285 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNL 320 L DQ+ Y ++ L Sbjct: 286 L--LDQLVNCYRDMMVLSCGADSLEL 309 >gi|255038674|ref|YP_003089295.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans DSM 18053] gi|254951430|gb|ACT96130.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans DSM 18053] Length = 621 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 30/291 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G I L + + A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 C ++A + L + N +V++IR + Sbjct: 66 QNLGDDVEACGECES------CVSFQNNASFNIHELDAASNN---------SVEDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + TG +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRYPPQTGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + ++ L ++ I + + A G + A+ + Sbjct: 171 RCQIFDFNRIQSKDIAHHLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFS 230 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + ++ ++ +HI +Y +I D L + + E + K Sbjct: 231 TNNHLTYAAVLENLHILDYDYYF----KITDALTAGSIARSLVLFDEILRK 277 >gi|254373626|ref|ZP_04989110.1| DNA polymerase III [Francisella novicida GA99-3548] gi|151571348|gb|EDN37002.1| DNA polymerase III [Francisella novicida GA99-3548] Length = 546 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 227 FCSGELKQ-------AQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDKIAEIWFA 291 >gi|255021192|ref|ZP_05293242.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] gi|254969307|gb|EET26819.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] Length = 572 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 139/349 (39%), Gaps = 49/349 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L SGR+HHA LF G +G+GK TL A + Sbjct: 20 LARRWRPQRFEDFVGQEAVVAALRHGLDSGRVHHAFLFTGTRGVGKTTLARLLAKSLNCE 79 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C+ + +A+ D L + + VDE R + Sbjct: 80 EGVSSRPCGECSA------CRSIANGNFVDLLEVDAASRT---------RVDETRELLDN 124 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SRC Sbjct: 125 VQYAPTVGRYKVYLIDEVHMLSSHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 184 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKIL-----HYDC 232 L ++ L + + L + I D+ + + AA GS+ A+ +L H Sbjct: 185 LQLQLRRLEPARIRERLRTIVDAEGIAAEDTALELLSHAADGSLRDALSLLDQAIVHGAG 244 Query: 233 DKIISSYIDLIHIP---------------RQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + D++ + L+ +Q+ D L QD D +IE Sbjct: 245 TVAAQAVRDMLGVAPEAVVWSLVTGLLRDDGPTVLRLVQEHMD--LGQDPAGLLDAVIEA 302 Query: 278 ILK--------EICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + + ++ ++ G L +A + + L+ F +Y Sbjct: 303 LHRLSLARYVEDVRRALPPPWDGGALPDALSLQAFHAILLSARRDFYLY 351 >gi|238788050|ref|ZP_04631846.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC 33641] gi|238723998|gb|EEQ15642.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC 33641] Length = 655 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 124/324 (38%), Gaps = 35/324 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPKTFLDVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGVCAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL + + LE++ +I + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLKVIDVEVIRALLEKILQAEQISSDARALQLLARAADGSMRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + ++ L + D + + + + + A L Sbjct: 226 AMGDGSVTTTT----------VSQMLGTLDDEQPLAIIEALVSADGAR--VMAQLEQAAS 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 + + +H +M L Sbjct: 274 RGIDWENLLVETLSLLHRIAMVQL 297 >gi|294783460|ref|ZP_06748784.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] gi|294480338|gb|EFG28115.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] Length = 482 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 82/351 (23%), Positives = 150/351 (42%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N P C K + D + + + N ++DEIR ++ Sbjct: 65 NLGEDGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +L ++ L+ + + D + + GS+ +I IL I+ Sbjct: 170 CQRYDFKALDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILER---LIV 226 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFL---------IEFILKEI 282 ++ + I++ E L +++ D+LL++ + + L IE K++ Sbjct: 227 TANGNEINLKIAEDTLGVTPSSRIKIFLDKLLNESEYNIINELEALANESFDIELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +L+ D+ +I ++ ++ F + D++ + + +++ Sbjct: 287 AKYCKNAIVKNELD-IDKGLKIISTIYDVINKFK-FEDDKKLVGYVIVADI 335 >gi|195953707|ref|YP_002121997.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp. Y04AAS1] gi|195933319|gb|ACG58019.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp. Y04AAS1] Length = 421 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 112/277 (40%), Gaps = 20/277 (7%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 R + P + L G E L + ++HHA +F G +G GK T +A + Sbjct: 7 ARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVLNCLN 66 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C P + + D + + + N +DEIR +R Sbjct: 67 PQEGEPCNAC------PNCQAIEKGTFVDLIEMDAASNR---------GIDEIRAVREGA 111 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 S G ++V +ID + + A NALLK++EEPP ++FIL + IL TI+SRC Sbjct: 112 SYLPMQGKYKVYIIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQ 171 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD-KIIS 237 + F+ S+ N+ L Q I + D + A S+ A +L Sbjct: 172 KLVFSRASKENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNK 231 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 ID++ +++ + L+ D K A + L Sbjct: 232 VTIDIVKSMFGPVDKASIRKFLELLIESDTKEAINML 268 >gi|315221642|ref|ZP_07863561.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus F0211] gi|315189293|gb|EFU22989.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus F0211] Length = 554 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ + L+Q I + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKTKDIVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q I++E+ A D + +L A L + Sbjct: 226 LTQDN----------QLTTAISEEITGSISLGALDAYVAAVLAHDTSVALK-NLDVIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ Sbjct: 275 GKNMARFVTDLLQYFRDL 292 >gi|227538385|ref|ZP_03968434.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium spiritivorum ATCC 33300] gi|227241767|gb|EEI91782.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium spiritivorum ATCC 33300] Length = 388 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 120/306 (39%), Gaps = 29/306 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G + I L + ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S+ +C+ K + L + N +VD+IR + Sbjct: 66 EHITSEVEACGVCDS------CKSFQNGNSFSIHELDAASNN---------SVDDIRNLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + +G +++ +ID V +++ A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRIPPQSGKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + ++ + L E+ + + A G + A+ + Sbjct: 171 RCQIFDFNRIRVEDMAQHLAGIAEKEAVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + S ID ++I +Y ++ D +L ++ + + + + + Sbjct: 231 NKQISYQSVIDNLNILDYDYYF----KLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGG 286 Query: 291 LSGQLE 296 LS L Sbjct: 287 LSSHLR 292 >gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella schoenbuchensis R1] Length = 642 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 116/305 (38%), Gaps = 30/305 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P N Q+ D + + + + +D+IR I Sbjct: 72 KTKDIDQPTIALNTL--GEHCAQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID + ++ A N LLK+LEEPP + FI + + TI SR Sbjct: 121 QIRYRPVSARYKIYIIDEIHMLSTQAFNGLLKTLEEPPPHIKFIFATTEIRKVPITILSR 180 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L + KI D + AA GS A+ I D+ I Sbjct: 181 CQRFDLRRIESAVLVEYLRKIAKHEKIKVEDQALSLIVRAAEGSARDALSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + +++ M +A DQ D EF++K SA + S Sbjct: 237 AYSNGKVS----TVSVRTMLGLA------DQARIIDLF-EFVMKGNIVSALSELRSQYDA 285 Query: 297 EADQI 301 AD Sbjct: 286 GADPF 290 >gi|329938776|ref|ZP_08288172.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045] gi|329302267|gb|EGG46159.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045] Length = 813 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 66/350 (18%), Positives = 126/350 (36%), Gaps = 38/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGECQS--CRDLAR--NGPGSLDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + F+ + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFVFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L +Q I D V A GSV ++ +L D Sbjct: 173 HHYPFRLVPPGTLRDYLGEVCKQEDIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAGD 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEICK 284 + ++ + + + +L + + + S D AF+ + I + ++ + Sbjct: 233 EGVTYAMATALLGYTDSSL--LDSVVEAFASGDGAAAFEVVDRIIEGGNDPRRFVTDLLE 290 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + +A D + + + F L R + + Sbjct: 291 RLRDLVILAAVPDAAEKGLIDAPDDVVERMQAQAGVFGAAELSRAADLVN 340 >gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus chthonoplastes PCC 7420] gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus chthonoplastes PCC 7420] Length = 700 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 97/274 (35%), Gaps = 21/274 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I + L+ ++ A LF G +G GK + A + Sbjct: 9 KYRPQTFADLVGQEAIAQTLTNAIRQEKVAPAYLFCGPRGTGKTSSARILAKSLNCLTTD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ + +A D + + N VD IR I Sbjct: 69 KPTPQPCGTCD------VCRTIAQGTALDITEIDAASNT---------GVDNIREIIERA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V ++D ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + K L+ + I V A G + A +L Sbjct: 174 RFDFRRIPLAAMVKHLQYIATKESINITTEAITLVAQVAQGGLRDAESLLDQLSLLAGEI 233 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 ++ I + + ++ + + D Sbjct: 234 TVECIWDLVGAVPERDLLALSQAITDNHAQAVLD 267 >gi|83749760|ref|ZP_00946736.1| DNA polymerase III subunit gamma/tau [Ralstonia solanacearum UW551] gi|83723580|gb|EAP70782.1| DNA polymerase III subunit gamma/tau [Ralstonia solanacearum UW551] Length = 785 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 140/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 56 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 115 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 116 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 160 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 161 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 220 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 221 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHESNALRLLAAAAQGSMRDALSLTDQA 280 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE + +I A Sbjct: 281 IAYSAGEVTETAVRGMLGAIDQSYLVRLLDALADENGAALIEIADEMAGRSLSFSGALQD 340 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 341 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 396 >gi|312880003|ref|ZP_07739803.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans DSM 12260] gi|310783294|gb|EFQ23692.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans DSM 12260] Length = 618 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 117/302 (38%), Gaps = 31/302 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G E + + L + GR HA LF G +G GK + A + Sbjct: 5 LYRRYRPSCFSEIVGQEGVVEALLRSLQEGRASHAYLFSGPRGCGKTSAARLVAKRLNCA 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +P C P +A+ D + + + N ++EIR ++ Sbjct: 65 SPAPGGESCGQC------PSCLALAAGEHMDVVEIDGASNR---------GIEEIRELKS 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +SL +V +ID V + A NALLK+LEEPP +V FIL + + TIRSR Sbjct: 110 HVSLAPFQSPHKVYIIDEVHMLTEPAFNALLKTLEEPPSRVYFILATTEPQKVPVTIRSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ + F + +++ L + + + + G++ A+ +L Sbjct: 170 CVHLPFQRIPNDDVVARLHEVCRAEGVEAEPQALWEIARQSDGALRDALSLLE------- 222 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 ++ + + + ++++ +D + + + ++ A LE Sbjct: 223 ----QVLALQPEAVTVAALRRLLGGTGREDLERWLQAFRQEPGQAFPHLSRLAQRGANLE 278 Query: 297 EA 298 Sbjct: 279 RL 280 >gi|15807400|ref|NP_296131.1| DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1] gi|6460225|gb|AAF11953.1|AE002071_7 DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1] Length = 615 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 111/296 (37%), Gaps = 20/296 (6%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P+ + + G E ++ L GR+ HA LF G +G+GK T A + Sbjct: 9 RPIRWEDVVGQEHVKDVLRTALEQGRIGHAYLFSGPRGVGKTTTARLIAMTANCT-GPAP 67 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C + + + D + + + N +VD++R +R + L A Sbjct: 68 KPCGECES------CLAVRAGSHPDVMEIDAASNN---------SVDDVRDLREKVGLAA 112 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G ++ ++D M+R A NALLK+LEEPP+ V+FIL + I+ TI SRC +F Sbjct: 113 MRGGKKIYILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRF 172 Query: 187 NSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 L+ + L L + + A G++ +L + Sbjct: 173 RRLTSEEIAGKLAGLVTLEGASADPDALNLIGRLADGAMRDGESLLERMLAAGTAVTRPA 232 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + ++++ +A LL D A + L A Sbjct: 233 VEEALGLPPGERVRGVASALLVGDAGEAISGAAQLYRDGFAARTVVEGLVAAFGAA 288 >gi|300691830|ref|YP_003752825.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum PSI07] gi|299078890|emb|CBJ51551.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum PSI07] Length = 729 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 65 VGTDGQGGITAQPCGVCRA------CTEIDTGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHEPNALRLLAAAAQGSMRDALSLTDQA 229 Query: 228 LHYDCDKIIS-SYIDLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + ++ Q Y ++ + +ADE + +I A Sbjct: 230 IAYSAGEVSEVAVRGMLGAIDQSYLVRLLDALADEHGAALIEIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|294101730|ref|YP_003553588.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] gi|293616710|gb|ADE56864.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] Length = 554 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 30/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P +++ + + +++ R+ HA LF G +G GK TL A + Sbjct: 5 LYRRYRPAQFKQIVAQDAAVQVITKALEEKRVSHAYLFSGPRGCGKTTLARLLAKSLNCT 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C P + D + + + N +VDE+R ++ Sbjct: 65 GQKQSVEPCNDC------PNCLAINGGESLDVIEIDGASNN---------SVDEVRELKA 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +SL+A + ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TIRSR Sbjct: 110 HVSLSAFSSLYKVYIIDEVHMLSLSAFNALLKTLEEPPSHVVFILATTEPHKVPVTIRSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C I F + N+ K+L + + A G++ A+ +L ++++ Sbjct: 170 CQHIPFRKIDVQNIVKSLSMVAHNENRNAEEEALWEIARQADGAMRDALSLL----EQVM 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEFILK 280 + + + L ++++ + S D + F L E + Sbjct: 226 ALAEQELRLVDVSRLLGGGSRPELERWVSRVRSGDISV-FSELQEMFQR 273 >gi|253990862|ref|YP_003042218.1| DNA polymerase III subunits gamma and tau [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639197|emb|CAR67810.1| DNA polymerase III subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782312|emb|CAQ85476.1| DNA polymerase III subunit [Photorhabdus asymbiotica] Length = 658 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 128/328 (39%), Gaps = 35/328 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ R+HHA LF G +G+GK T+ ++ + Sbjct: 5 VLARKWRPQIFSNVIGQEHVLTALANGLAHDRLHHAYLFSGTRGVGKTTIARLFSKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ D + + + K V++ R + Sbjct: 65 EIGITDKPCGKCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 110 NVQYAPTRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE++ + R + AA GS+ A+ + Sbjct: 170 CLQFHLKALDVAQISDQLERILKAEHLESDSRARQLLARAADGSMRDALSLAD------- 222 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 I + + + + + Q+ L + + L+ +++ + AL G Sbjct: 223 ----QAIAMGQGQVTAEIVSQMLGTLDDEQPLSIIEALVRADGRQVMALVEQVALRGT-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQ 324 + + +H +M L Q Sbjct: 277 ---DWENLLVETLSLLHRIAMIQLLPSQ 301 >gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex] Length = 556 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 135/337 (40%), Gaps = 33/337 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P ++ G + + +SQ R+ H LF G +GIGK T A ++ Sbjct: 28 VLARKYRPRRFSQVVGQNILVRLISQALKRDRLGHGFLFSGMRGIGKTTTARLLACYLNC 87 Query: 61 ----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P +C+ + + D + + + + VD+IR Sbjct: 88 LNLRQTEGEIEPCGVCDS------CRAFEAEKHIDIIEMDAASHT---------GVDDIR 132 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I G ++V +ID V +++NA NALLK+LEEPP+ V FI + +L T Sbjct: 133 EILEACRYRPVLGRYKVFIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIQKVLPT 192 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 + SRCL L L L+ + I + A GS ++ +L Sbjct: 193 VVSRCLRFDLKRLDPAVLVPYLQDICTKETIKADPEALLLLAQAGGGSARDSLSLLD--- 249 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 I L QE + Q + L D+K AF L E IL+ K++ A S Sbjct: 250 -----QAILLAEQQSQENPCIQAQDVGQMLGLLDRK-AFHTLFEAILQGDAKASVETAQS 303 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + E D + ++ L VH S + ++ + + Sbjct: 304 LEGEGIDPL-RVMEELSTFVHHLSCLKVGVKEGLLGM 339 >gi|114565606|ref|YP_752760.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336541|gb|ABI67389.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 499 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 124/302 (41%), Gaps = 31/302 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + RA+ P + G E L G++ HA LF G +G GK ++ A V Sbjct: 6 LYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAKAVNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + D + + + N +DEIR +R Sbjct: 66 NLSEGEPCNQCSS------CQDINNGNFMDVIEIDAASNR---------GIDEIRDLREK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +V +ID V + A NALLK++EEPP V+FIL + S I +TIRSRC Sbjct: 111 VRVLPAQGKNKVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F L+ + + L + I+ + A G + A+ +L Y + Sbjct: 171 QVYNFRRLTTAEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSYKGN 230 Query: 234 KIIS--SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL--KEICKSAKAA 289 IS ++++ + + M Q+ +LSQD L KE + A+ A Sbjct: 231 NSISKQDVLEVMGLVDDAF----MAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAREA 286 Query: 290 AL 291 ++ Sbjct: 287 SM 288 >gi|237741245|ref|ZP_04571726.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] gi|229430777|gb|EEO40989.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] Length = 484 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A + Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGLNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLMVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 230 GKEIDLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELENLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|317131169|ref|YP_004090483.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] gi|315469148|gb|ADU25752.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] Length = 559 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 133/354 (37%), Gaps = 33/354 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L +GR+ HA LF G +G GK T A V Sbjct: 5 LYRKWRPRTFEDVAGQPQIVATLLGELRAGRVAHAYLFTGSRGTGKTTCAKILAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + +L D + + + N VD IR +R Sbjct: 65 HPQNGDPCGEC------AVCRGIDDGSLTDVVEIDAASNN---------GVDSIRALREE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T +RV +ID ++ A NALLK+LEEPP VLFIL + + I +TI SRC Sbjct: 110 TVYTPAAAKYRVYIIDEAHMLSAGAFNALLKTLEEPPAYVLFILATTEAHKIPATILSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCD 233 F + ++ L EQ I + + A G++ A+ +L + D Sbjct: 170 QRFDFRRIPPADIAARLLYVAEQEHIPLTQDGAEAIARLADGALRDALSLLDTCANGGGD 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-----LKEICKSAKA 288 + + + + ++D + + D A L E +C+ Sbjct: 230 AVDE---EAVARAAGLAGRDYLYALSDAVHAGDAPQALRTLDELYASAKDADRLCEELIG 286 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFR 342 + L +A I + S R+ + + D + + H L + + R Sbjct: 287 HFRAIMLTQAGSIPPVSASEAGRLQDAAR-DFDP-ETVLHALDTLQHTAETLRR 338 >gi|124267720|ref|YP_001021724.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124260495|gb|ABM95489.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 614 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 136/360 (37%), Gaps = 41/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + G E + + L+ S R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRHFGEMVGQEHVVQALANALTSQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + + + D+ L + N VDEI Sbjct: 65 TGPDGQGGITAQPCGVC------PACRDIDAGRFVDYTELDAASNR---------GVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ + G ++V MID V ++ A NA+LK+LEEPP+ + F+L + + Sbjct: 110 SQLLEQSAYKPVVGRFKVFMIDEVHMLSSTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + LEQ I + A+GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLAHLEQVLAAEGISAEPGALRLLARGAHGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + + + + D L + D + A Sbjct: 226 TDQAIAFGAGTLQEAGVRQMIGAVGRSHVYALIDALAAGDGAGV-------VATADALRA 278 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL-LSKARECNDLYFRDFY 345 + + G LEE + Q L A + D ++ L A E LY + Sbjct: 279 EGLSAEGALEEMAVVLQQLALLQVLPDALDAADPDTAALVQRAGLLPADETQLLYSIALH 338 >gi|229495419|ref|ZP_04389154.1| DNA polymerase III, subunit gamma and tau [Porphyromonas endodontalis ATCC 35406] gi|229317862|gb|EEN83760.1| DNA polymerase III, subunit gamma and tau [Porphyromonas endodontalis ATCC 35406] Length = 594 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 121/306 (39%), Gaps = 29/306 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R F P + L G E + + L + + HA LF G +G+GK + +A + Sbjct: 7 VSARKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIFARAINC 66 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P S C+ + A + + + N +IR++ Sbjct: 67 ASPLASGEACGECDS------CRAFAEQRSFNVFEMDAASNNSAN---------DIRQLI 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ G +++ +ID V ++ A NA LK+LEEPP+ V+FI+ + IL TI S Sbjct: 112 EEVNIPPQVGRYKIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILS 171 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC F + + + L + +I + + + A G + A+ + Sbjct: 172 RCQVFDFKPIPSDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYT 231 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 D + S ++ ++I +Y + D L+ D L E I++ Sbjct: 232 DGEVSYSRTLESLNILDDDYYF----RFVDLLVHNDYASTLLLLDELIMRGFDPRTIVLG 287 Query: 291 LSGQLE 296 L+ L Sbjct: 288 LTDFLR 293 >gi|315187318|gb|EFU21074.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila DSM 6578] Length = 510 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 28/288 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G E + L+ +GR+ HA LF G +G+GK + A + Sbjct: 5 VTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K+++ D + + + N +V+++R IR Sbjct: 65 EQGVTPEPCGTCTS------CKEISQGTAIDVIEIDGASNT---------SVNDVRVIRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ +A NALLK++EEPP V+FI + + +TIRSR Sbjct: 110 EVLFAPGKARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S + L ++++ + ++ A GS+ A + D+++ Sbjct: 170 CQQYHFRLISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLF----DQVV 225 Query: 237 SSYI-----DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S LI +++Q + + + ++ K A D + E ++ Sbjct: 226 SFSEGRLSYALIQEKLGLVGFERLQAVVEACVREEVKGALDLVHEILM 273 >gi|297563735|ref|YP_003682709.1| DNA polymerase III subunits gamma and tau [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848183|gb|ADH70203.1| DNA polymerase III, subunits gamma and tau [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 732 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 120/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q SGR++HA LF G +G GK T A + Sbjct: 5 LYRKYRPATFGEVRGQEHVTDPLRQALRSGRINHAYLFSGPRGCGKTTSARILARSLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 EGPTPDPCGTC--DSCVALAP--DGGGSIDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + R NALLK +EEPP + F+ + ++ TIRSR Sbjct: 112 AFFSPVNSRYKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + + L + +E + + + V A GS Sbjct: 172 HHYPFRLIPPSTLKELMEDLLKEEGVSYDPAALPLVVRAGAGSARDTLSVLDQLIAGSDE 231 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+ +L Y ++ +D + + ++ + D + L+E Sbjct: 232 GGITREGAVSLLGYTDSSLLGEMVDALGARDGAAVFGLIDRVVE--GGLDPRRFTTDLLE 289 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + +A AL L D + + + L R I + Sbjct: 290 RFRDLVVLAAVPDALDKGLVNVDP--EATERMKDQAARLGPAELSRAADILN 339 >gi|184199929|ref|YP_001854136.1| DNA polymerase III tau subunit [Kocuria rhizophila DC2201] gi|183580159|dbj|BAG28630.1| DNA polymerase III gamma/tau subunit [Kocuria rhizophila DC2201] Length = 1264 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 124/335 (37%), Gaps = 34/335 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + + L R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + C + A D + + + + VD R +R Sbjct: 65 EGPTATPCGRC--ESCRDLARDGA--GSLDVIEMDAASHG---------GVDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + R NALLK +EEPP+ V FI + +L+TIRSR Sbjct: 112 ATFAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + LEQL + V A GSV ++ +L D++++ Sbjct: 172 HHYPFRLVPPEPLMRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVL----DQLMA 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +A LL D +++ + +++ ++ Sbjct: 228 GSDE----------RGISYDLAVALLGYTHAALLDDVVDAFAAGDAATVF-SSVDRVVQT 276 Query: 298 ADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLL 330 + L++R + N D I H + Sbjct: 277 GQDPRRFVEDLLERFRDLVVVNAVPDSAANILHGM 311 >gi|315497912|ref|YP_004086716.1| DNA polymerase iii, subunits gamma and tau [Asticcacaulis excentricus CB 48] gi|315415924|gb|ADU12565.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis excentricus CB 48] Length = 603 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 131/357 (36%), Gaps = 30/357 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + LS + +GR+ HA + G +G+GK T A + Sbjct: 43 VLARKYRPRTFEDLIGQEAMVRTLSNAFATGRIAHAFMLTGVRGVGKTTTARLLARALNY 102 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + + D L L + VD +R + Sbjct: 103 ESDTMKGP--SVDLSTFGYHCQAIIEGRHIDVLELDAASRT---------GVDSMRELLE 151 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 152 SVRYAPVEARYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 211 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L LE++ + AA GSV ++ +L + Sbjct: 212 CQRFDLRRVEPETLTPHLEKICRLEGAQIEPDALALIARAAEGSVRDSLSLLDQALVQAE 271 Query: 237 SS-------YIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 D++ + + L + I + LL+ F I+ ++ + Sbjct: 272 EGQSVSAEVVRDMLGLADRSATLSLFENIISGQMPEALLAFRTLYGFGADPSQIMGDLLE 331 Query: 285 SAKAAALSGQL-EEADQI-AQIYFSLVKRVHAFSMYNLDRR-QMIFHLLSKARECND 338 AA+++ L EA ++ + + S L R ++ + R D Sbjct: 332 YCHAASVAKVLGSEATRLPKEPAQRVAALGAQLSAGTLSRLWTLMLKAFEEIRRAPD 388 >gi|309811747|ref|ZP_07705524.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp. Ellin185] gi|308434293|gb|EFP58148.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp. Ellin185] Length = 893 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 128/353 (36%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q +GR++HA LF G +G GK T A + Sbjct: 15 LYRRYRPETFADVIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTSARILARCLNCE 74 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + A D + + + + VD+ R +R Sbjct: 75 QGPTPTPCGVC--DSCVALARGGA--GSVDVIEIDAASHG---------GVDDARDLRER 121 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 122 ASFGPASSRYKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSRT 181 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L +E L + FV A GSV Sbjct: 182 HHYPFRLVPPKKLSDYMETLLDAEGVAYEPGVLSFVTRAGGGSVRDSLSVLDQLIAGSGP 241 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L + D+++ I+ +++ ++ + D + + L+E Sbjct: 242 EGLTYAGAASLLGFTDDELLDGIIEAFAAGDSAAVFRQIDRVVES--GADPRRFVEDLLE 299 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + I +A A L + + + +F L R + + Sbjct: 300 RLRDLIVVAAVAEGAGAVLRSVPE--DQLERMRSQAASFGAGALSRAADVINA 350 >gi|89257153|ref|YP_514515.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica LVS] gi|115315492|ref|YP_764215.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica OSU18] gi|156503378|ref|YP_001429443.1| DNA polymerase III, subunits gamma/tau [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011046|ref|ZP_02275977.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica FSC200] gi|254368377|ref|ZP_04984395.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica 257] gi|89144984|emb|CAJ80344.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica LVS] gi|115130391|gb|ABI83578.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134254185|gb|EBA53279.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica 257] gi|156253981|gb|ABU62487.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica FTNF002-00] Length = 545 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQTDIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSAN 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|223558002|gb|ACM91008.1| DNA polymerase III subunit gamma/tau [uncultured bacterium URE4] Length = 577 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 136/358 (37%), Gaps = 39/358 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + L G ++I + LS G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFAKMINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P P C + L + N VD+I+ + Sbjct: 66 AHPGPDMEPCGECES------CVSFQEGRSYCIHELDAASNN---------GVDDIKALI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G + V +ID V ++++A NA LK+LEEPP +F+L + IL TI S Sbjct: 111 EQVQVPPQVGKYSVYIIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC + FN + ++ + L + I D + A G++ A+ I Sbjct: 171 RCQTYDFNRIGIPDMVRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFC 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 D + +++ +Y+ + + LS A E + K AA Sbjct: 231 GTDIKYEDVVRNLNVLDYDYSFG----MVENFLSGSYAAALSSFDEILSKGFNALHFVAA 286 Query: 291 LSGQLEE--------ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 LS L + D + ++ SL +R + Q ++ L C Y Sbjct: 287 LSSHLRDLVVARTAGLDALLELPDSLKQRYREQAARC--PLQFLYDALGVTTACEAGY 342 >gi|294784544|ref|ZP_06749833.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] gi|294487760|gb|EFG35119.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] Length = 484 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A + Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGLNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLMVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 230 GKEIDLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELENLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNAIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|239907167|ref|YP_002953908.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus RS-1] gi|239797033|dbj|BAH76022.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus RS-1] Length = 654 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 116/287 (40%), Gaps = 28/287 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G + +++ LS+ R+ A LF G +G+GK TL A + Sbjct: 9 KYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAKALNCETAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P +C+ +Q+ + D + + + + K VD+ RR++ + Sbjct: 69 TGEPCNVCSQ------CRQITAGVSPDVIEIDAATHGK---------VDDARRLKEDVGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID + A NALLK+LEEPP +V FIL + +TI SRC Sbjct: 114 APLNSRYKVFIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHY 173 Query: 185 KFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F L+++ L L + + + GSV ++ +L + Sbjct: 174 LFKRLAQSELEAHLSSVLMREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 + ++ + QE + + + ++D + L + + K + Sbjct: 234 EADARGVLGLAGQEVFFG----LIEAIRAEDGPAVVELLRQVLDKGL 276 >gi|327473978|gb|EGF19391.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK408] Length = 556 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LEQ I + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + D+ +L + L++ D A D L Sbjct: 230 NLLTTDIAEEITGSISLGALDAYVAALIAHDAVTALDNL 268 >gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 575 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 77/329 (23%), Positives = 131/329 (39%), Gaps = 31/329 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + L + + HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFRSVIGQNSLTTTLKNAIITRHLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N C + + + + N +VD+IR + Sbjct: 66 SNITEEGEACNQCES------CVSFNENRSLNIFEMDAASNN---------SVDDIRELV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +RV +ID V ++ A NA LK+LEEPP+ +FIL + IL TI S Sbjct: 111 KQVMVPPQIGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPEYAIFILATTEKHKILPTIIS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YD 231 RC FN + N+ L + KI + + A G++ A+ I Y Sbjct: 171 RCQVYDFNRIQINDTVDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYC 230 Query: 232 CDKI-ISSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKS 285 +KI ID++++ EY LQ + + L+ D+ I F ++ + + Sbjct: 231 GNKITYKEVIDILNVLDYEYYLQMVDCFVRGDVVGSLMILDKIINKGFDVQSFVSGLSSH 290 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHA 314 + L Q E + + Q+ S+ KR Sbjct: 291 FRDL-LVAQNERSISLLQVSDSIKKRYAE 318 >gi|189501776|ref|YP_001957493.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus 5a2] gi|189497217|gb|ACE05764.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus 5a2] Length = 629 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 115/295 (38%), Gaps = 34/295 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G I L + + HA LF G +G+GK T A + Sbjct: 6 VSARKYRPSVFSHVLGQAHITTTLKNAIRTNHLAHAFLFCGPRGVGKTTCARILAKAINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C+ K + L + N +V+++R + Sbjct: 66 QQLTADIEPCNACDS------CKSFNQRTSFNIYELDAASNN---------SVEDVRSLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G +++ +ID V +++ A NA LK+LEEPP +FIL + +L TI S Sbjct: 111 DQVRYPPQNGAYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIK----ILHYD 231 RC F + ++ + L EQ I + + + A G++ A+ I+ + Sbjct: 171 RCQIFDFQRIKPEDIVQQLKNVSEQEHIPYDEEALHLISLKADGALRDALSMFDVIVSFG 230 Query: 232 CDKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 K+ + ++ +HI ++ + +L D K I EI +S Sbjct: 231 AGKLTYEATLENLHILDYSCYF----KLTEAILQNDIKACL-----LIYDEIIQS 276 >gi|22124967|ref|NP_668390.1| DNA polymerase III subunits gamma and tau [Yersinia pestis KIM 10] gi|45440656|ref|NP_992195.1| DNA polymerase III subunits gamma and tau [Yersinia pestis biovar Microtus str. 91001] gi|51595342|ref|YP_069533.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis IP 32953] gi|108808607|ref|YP_652523.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Antiqua] gi|108811131|ref|YP_646898.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Nepal516] gi|145600018|ref|YP_001164094.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Pestoides F] gi|149365029|ref|ZP_01887064.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CA88-4125] gi|162421503|ref|YP_001607270.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Angola] gi|165927644|ref|ZP_02223476.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. F1991016] gi|165935942|ref|ZP_02224512.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. IP275] gi|166011016|ref|ZP_02231914.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. E1979001] gi|166213081|ref|ZP_02239116.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. B42003004] gi|167399280|ref|ZP_02304804.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422767|ref|ZP_02314520.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423551|ref|ZP_02315304.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186894361|ref|YP_001871473.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis PB1/+] gi|218930155|ref|YP_002348030.1| DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] gi|229838721|ref|ZP_04458880.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899289|ref|ZP_04514432.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229901363|ref|ZP_04516485.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis Nepal516] gi|270489548|ref|ZP_06206622.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27] gi|294504861|ref|YP_003568923.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003] gi|21957809|gb|AAM84641.1|AE013709_10 DNA polymerase III, tau and gamma subunits [Yersinia pestis KIM 10] gi|45435514|gb|AAS61072.1| DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) [Yersinia pestis biovar Microtus str. 91001] gi|51588624|emb|CAH20232.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Yersinia pseudotuberculosis IP 32953] gi|108774779|gb|ABG17298.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Nepal516] gi|108780520|gb|ABG14578.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Antiqua] gi|115348766|emb|CAL21718.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CO92] gi|145211714|gb|ABP41121.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit [Yersinia pestis Pestoides F] gi|149291442|gb|EDM41516.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) [Yersinia pestis CA88-4125] gi|162354318|gb|ABX88266.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis Angola] gi|165916087|gb|EDR34694.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. IP275] gi|165920398|gb|EDR37675.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. F1991016] gi|165990016|gb|EDR42317.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. E1979001] gi|166205868|gb|EDR50348.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. B42003004] gi|166958358|gb|EDR55379.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051784|gb|EDR63192.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057721|gb|EDR67467.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186697387|gb|ACC88016.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis PB1/+] gi|229681292|gb|EEO77386.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis Nepal516] gi|229687691|gb|EEO79764.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229695087|gb|EEO85134.1| DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362925|gb|ACY59646.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D106004] gi|262366846|gb|ACY63403.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D182038] gi|270338052|gb|EFA48829.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27] gi|294355320|gb|ADE65661.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003] gi|320016308|gb|ADV99879.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 658 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 43/328 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE+ +I + AA GS+ A+ + D+ + Sbjct: 170 CLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSL----TDQAV 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S + ++ L + D + + + SA A + Q+E Sbjct: 226 SMGQGQVTTVT----------VSQMLGTLDDEQPLAIIEALV------SADGARVMAQIE 269 Query: 297 EADQIAQIYFSL----VKRVHAFSMYNL 320 +A + +L + +H +M L Sbjct: 270 QAASRGVDWENLLVESLSLLHKIAMVQL 297 >gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] Length = 597 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP + C K ++ L + N +V+ I+ + Sbjct: 66 QNPTETGEACNECES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIIS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F +S + L ++ I D + A G + A+ I Sbjct: 171 RCQIYDFERMSVQGIVDHLKMVADKEGITYEDQALSIIAEKADGGMRDALSIFDQAA 227 >gi|309805430|ref|ZP_07699477.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] gi|308165248|gb|EFO67484.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] Length = 583 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK + +A + Sbjct: 6 LYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ L+D + + + N VDEIR IR Sbjct: 66 DSKDGEPCNQCSN------CLAADKGILNDIIEIDAASNN---------GVDEIRAIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + GY++V +ID V ++ A NALLK+LEEPP+ V+FIL + + +TI SR Sbjct: 111 VKYAPTQGYYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRT 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY--DCDKI 235 F +S + L L+Q KI + + A G + ++ IL D+ Sbjct: 171 QRYNFKRISNDQLVARMKFILDQDKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQA 230 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +Y D + I + K++ + +LL++ A + + E + Sbjct: 231 KINYKDTLAITGYADQV-KIEALFLDLLNRKTSQALEEVEELL 272 >gi|149279562|ref|ZP_01885691.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39] gi|149229598|gb|EDM34988.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39] Length = 624 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 114/286 (39%), Gaps = 26/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + I L + ++ A LF G +G+GK T A + Sbjct: 6 VSARKYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N + C + +F L + N +VD+IR + Sbjct: 66 TNLTAEQEACGTCES------CISFQTGHSFNFHELDAASNN---------SVDDIRSLI 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V ++ NA NA LK+LEEPP +FIL + IL TI S Sbjct: 111 DQVRIPPQAGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + +++ L ++ I + A G + A+ + Sbjct: 171 RCQIFDFNRIQVDDISSHLNRIAIRENISVEADGLHIIAQKADGGLRDALSMFDQIVSYT 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + + S ID ++I +Y + + +S + + FD ++ Sbjct: 231 NKNLTYKSVIDNLNILDYDYYFKLTTFLTAADVS-NSLVLFDEILN 275 >gi|290953351|ref|ZP_06557972.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica URFT1] gi|295313398|ref|ZP_06804005.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. holarctica URFT1] Length = 545 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQTDIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + +I+ K I + K AL+ Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSAN 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDRIAEIWFA 291 >gi|118496780|ref|YP_897830.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. novicida U112] gi|194324539|ref|ZP_03058311.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis subsp. novicida FTE] gi|118422686|gb|ABK89076.1| DNA polymerase III, gamma/tau subunits [Francisella novicida U112] gi|194321374|gb|EDX18860.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis subsp. novicida FTE] Length = 546 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK T+G A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTIGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 227 FCSGELKQ-------AQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDKIAEIWFA 291 >gi|228470720|ref|ZP_04055571.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] gi|228307577|gb|EEK16573.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] Length = 429 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 26/266 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E I L G++ HA LF G +G+GK + A + Sbjct: 7 VSARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTSAARILARTINC 66 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +C + + L + N +VD+IRR+ Sbjct: 67 EQLTPQGEACGVCAN------CQAALHQRAFNIYELDAASNN---------SVDDIRRLN 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI S Sbjct: 112 EDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILS 171 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F + + + L + + D + A G + A+ + D++ Sbjct: 172 RCQVYDFKPIPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLF----DRL 227 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADE 261 S+ D + E LQ + + DE Sbjct: 228 ASTAQD--GVISYEQTLQTLNILDDE 251 >gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] Length = 555 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 21/283 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L Q G++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD--CDKI 235 +F S+ ++ + L + ++ + + A G + A+ IL + Sbjct: 170 QRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQD 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 +++ +L+ + L D A L Sbjct: 230 QQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQTLF 272 >gi|126736700|ref|ZP_01752439.1| DNA polymerase III subunit delta [Roseobacter sp. CCS2] gi|126713815|gb|EBA10687.1| DNA polymerase III subunit delta [Roseobacter sp. CCS2] Length = 368 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 23/355 (6%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I A P ++LFG + + + +GR+H L G +G+GKATL ++ A +L N Sbjct: 12 IAGAPHPRETRQLFGQDKAQADFLDAFGAGRLHSGWLITGPRGVGKATLAWKIATFLLSN 71 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P+ + DP P + + S A + + KT K ++ ITVD +R ++ F Sbjct: 72 PEAGLFGDPSLDVDPEHPDARLIQSGAHPRLSLIRRPWDEKTKKLKSEITVDAVRSLKSF 131 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++A G RV+++D D +NRNAANA+LK LEEPP +LI+H +L TIRSRC Sbjct: 132 FQMSAADGGRRVVIVDAADELNRNAANAILKELEEPPANCTILLIAHQPSRLLPTIRSRC 191 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 ++ L+ ++L +AL Q S D + A GS AI++L++D + + I Sbjct: 192 RELRCARLNADDLQRALTQAGHPSEQS--DSLAALAGGSAGDAIRLLNHDGLALYAELIK 249 Query: 242 LI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL--------- 291 + IPR + ++AD + + ++ F ++ I + ++A+A L Sbjct: 250 IFDKIPRLDR--PSALRLADGCVGKANEVRFGMTLDLIDLFLSRAARAGLLGEPSAQGAP 307 Query: 292 ---------SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 S A AQ+ L R NLD +I ++ K E Sbjct: 308 GEARLLTRISPDDRAARNWAQLQQDLTDRSRHGRAVNLDPAALILDMIFKIEETA 362 >gi|153949412|ref|YP_001402019.1| DNA polymerase III subunits gamma and tau [Yersinia pseudotuberculosis IP 31758] gi|152960907|gb|ABS48368.1| DNA polymerase III, subunits gamma and tau [Yersinia pseudotuberculosis IP 31758] Length = 658 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 43/328 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGTCAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L + LE+ +I + AA GS+ A+ + D+ + Sbjct: 170 CLQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSL----TDQAV 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 S + ++ L + D + + + SA A + Q+E Sbjct: 226 SMGQGQVTTVT----------VSQMLGTLDDEQPLAIIEALV------SADGARVMAQIE 269 Query: 297 EADQIAQIYFSL----VKRVHAFSMYNL 320 +A + +L + +H +M L Sbjct: 270 QAASRGVDWENLLVESLSLLHKIAMVQL 297 >gi|291558238|emb|CBL35355.1| DNA polymerase III, subunits gamma and tau [Eubacterium siraeum V10Sc8a] Length = 743 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 20/280 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + E I L +G HA LF G +G GK T A V Sbjct: 5 LYRKYRSATFDEVISQEHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K +A+ D + + + N VD++R +R Sbjct: 65 SPVDGNPCGECES------CKAIAAG-CPDIIEMDAASNN---------GVDDVRALRDE 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++ A NALLK++EEPP V+FIL + + +TI SRC Sbjct: 109 VMYAPTVCRYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRC 168 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F+ + K L ++ + + + + G + A+ +L Sbjct: 169 QQFRFSRIDVEESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD 228 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + + +A + Q+ A L E Sbjct: 229 IDEETVRTTAGIAGTEHLFTLAQCIHEQNAPEALKILDEL 268 >gi|77408841|ref|ZP_00785568.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae COH1] gi|77172527|gb|EAO75669.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae COH1] Length = 554 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 135/352 (38%), Gaps = 50/352 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ ++L + L++ I V A G + A+ IL Sbjct: 170 QRFEFKAIKLLAIRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 ++I L +A+E+ A D + IL A A L + Sbjct: 230 NHISL--------------DVAEEITGSISLSAIDDYVSNILAHDTTEA-LAKLEVIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAFS---------------MYNLDRRQMI-FHLLSKA 333 +++ L+ + M NLD +Q I F ++ K Sbjct: 275 GKSMSRFATDLLMYLRDLLVVQAGGENSHSSDTFMANLDVKQDILFEMIDKV 326 >gi|330833256|ref|YP_004402081.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3] gi|329307479|gb|AEB81895.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3] Length = 555 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L Q G++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD--CDKI 235 +F S+ ++ + L + ++ + + A G + A+ IL + Sbjct: 170 QRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQD 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +++ +L+ + L D A L + Sbjct: 230 QQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQ 274 >gi|319744863|gb|EFV97199.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus agalactiae ATCC 13813] Length = 554 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 135/352 (38%), Gaps = 50/352 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ ++L + L++ I V A G + A+ IL Sbjct: 170 QRFEFKAIKLLAIRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKD 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 ++I L +A+E+ A D + IL A A L + Sbjct: 230 NHISL--------------DVAEEITGSISLSAIDDYVSNILAHDTTEA-LAKLEVIFDS 274 Query: 298 ADQIAQIYFSLVKRVHAFS---------------MYNLDRRQMI-FHLLSKA 333 +++ L+ + M NLD +Q I F ++ K Sbjct: 275 GKSMSRFATDLLMYLRDLLVVQAGGENSHSSDTFMANLDVKQDILFEMIDKV 326 >gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum ATCC 11170] gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170] Length = 659 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 118/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ SGR+ A + G +G+GK T A + Sbjct: 40 VLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARALNC 99 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C K +A D L + + V +I Sbjct: 100 VGADGKGGVTITPCGVC------EHCKAIAEDRHVDVLEMDAASRT---------GVGDI 144 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + +V +ID V ++ A NALLK+LEEPP+ V FI + + Sbjct: 145 REILDGVRYRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPV 204 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC +S L ++ S + AA GSV + +L Sbjct: 205 TVLSRCQRFDLRRVSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLL--- 261 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ + Q+A+ L D+ FD L + I +S Sbjct: 262 -DQAIAHGGGTVSEA----------QVAEMLGLADRARIFDLLDALLAGRIAESLDLLDR 310 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 L AD + I L+ VH Sbjct: 311 QYAL-GADPLV-IVQDLLDLVH 330 >gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361] gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361] Length = 602 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 31/288 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G E + L ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFSAVVGQEALTTTLKNAVKGDKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C+ K + L + N +V+ I+ + Sbjct: 66 EHPSADGEACNECSS------CKSFNEGRSMNIFELDAASNN---------SVENIKTLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + TG ++V +ID V ++ +A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTQIPPQTGRYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSL----SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F + + ++L K +Q I + + A G + A+ I D++ Sbjct: 171 RCQIYDFERMTVPETIDHLKKVADQEGISYEEEALGIIAEKADGGMRDALSIF----DQV 226 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 S + QK+ + + L +++ D IE + +I Sbjct: 227 ASYC-------QGNITFQKVLEDLNVLDAENYFHIIDLAIENKVSDIM 267 >gi|323351733|ref|ZP_08087387.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis VMC66] gi|322122219|gb|EFX93945.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis VMC66] Length = 556 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICKAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L+S D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALISHDAVAALDNL 268 >gi|300704438|ref|YP_003746041.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] gi|299072102|emb|CBJ43434.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] Length = 735 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 140/356 (39%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + K L+ R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ + D++ + + N VDE+ Sbjct: 65 IGTDGQGGITAQPCGVCRA------CTEIDAGRFVDYIEMDAASNR---------GVDEM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + +A NA+LK+LEEPP+ V FIL + I Sbjct: 110 AQLLDRAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL + ++ L+++ I + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLKQMPPGHIVSHLDRILGEEGIAHESNALRLLAAAAQGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKI-------------AFDF 273 + Y ++ + + ++ Q Y ++ + +ADE + +I A Sbjct: 230 IAYSAGEVTETAVRGMLGAIDQSYLVRLLDALADENGAALIEIADEMAGRSLSFSGALQD 289 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAF--SMYNLDRRQMIF 327 L + K AA+ EAD I ++ + NL R ++ Sbjct: 290 LASLLQKIALAQVVPAAVQDDWPEADDIRRLAERFDAQSVQLFYQFANLGRNELAL 345 >gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] Length = 745 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 108/282 (38%), Gaps = 21/282 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G + I + L+ R+ A LF G +G GK + A + + Sbjct: 8 KYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSLNCLSSE 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C D C ++ +A D + + + N VD IR + Sbjct: 68 VPTAQPCGQC--DVCQAVIQGIA----LDVVEIDAASNT---------GVDNIRELIERS 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 +++ ++D V ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 113 QFAPVQCRYKLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQ 172 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + ++ K L + I S V + G + A +L + Sbjct: 173 RFDFRRIPLPSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSLQANKI 232 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 ++ + + + + + + D + + + K Sbjct: 233 TVETVWDLVGAVPERDLLNLVRAIAADDSTALLERVRHLMDK 274 >gi|327459781|gb|EGF06121.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1057] Length = 556 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKEGEPCNECY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVAALDNL 268 >gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 558 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 126/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVKGEPCNHCD------ICRDITTGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + +L L++ I + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKQAAICEHLAAILDKEGIAYETEALHLIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + IA+E+ A D ++ ++++ A A L + Sbjct: 226 LSFDN----------RVTLAIAEEITGSISISALDDYVQHLIRQKTSQA-LANLETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ Sbjct: 275 GKSMSRFATDLLTYFRDL 292 >gi|121604575|ref|YP_981904.1| DNA polymerase III subunits gamma and tau [Polaromonas naphthalenivorans CJ2] gi|120593544|gb|ABM36983.1| DNA polymerase III, subunits gamma and tau [Polaromonas naphthalenivorans CJ2] Length = 605 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/356 (19%), Positives = 131/356 (36%), Gaps = 49/356 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L +GR+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKNFSEMVGQSHVVQALGNALGTGRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C+ + + S D+ L + N VDEI Sbjct: 65 TGPDGQGGITATPCGVCDA------CRDIDSGRFVDYTELDAASNR---------GVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + A NA+LK+LEEPP+ + F+L + + + Sbjct: 110 AQLLEQAVYKPVVGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPA 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLVQVLALENVPAEPQALRLLSRAARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDF------------- 273 D+ I+ + L + ++ D L D + + Sbjct: 226 TDQAIAFGSGRLDEASVRVMLGSVDRSYVFRLLDALARGDGRTVVETSEVLRLNGLSAAS 285 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 +E + + + A A+ G D + + D Q+++ L Sbjct: 286 TLEEMATILQRMAVLQAVPGMGAGDD---DTDPEIAETARLAQAMPADETQLLYSL 338 >gi|62261627|gb|AAX78003.1| unknown protein [synthetic construct] Length = 581 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 32 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 91 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Y Sbjct: 92 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILYN 136 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 137 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 196 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 197 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 248 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + + + K I + K AL+ + Sbjct: 249 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAITDNDPKAILPAIKNLALTESSAD 305 Query: 298 --ADQIAQIYFS 307 D+IA+I+F+ Sbjct: 306 VVLDRIAEIWFA 317 >gi|242279902|ref|YP_002992031.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio salexigens DSM 2638] gi|242122796|gb|ACS80492.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio salexigens DSM 2638] Length = 638 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 24/263 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E ++ LS+ ++ A LF G +G+GK T+ +A + Sbjct: 9 KYRPQTFGEVAGQEAVKTILSRAAAQDKVAPAYLFSGTRGVGKTTIARIFAKALNCKNAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C+ +Q+ + D + + + + K VD+ RR++ + Sbjct: 69 TAEPCNECDN------CRQITAGVGVDVVEIDAASHGK---------VDDARRLKEDIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID + A NALLK+LEEPP FI+ + + +TI SRC Sbjct: 114 APIEFRYKVFIIDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHY 173 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCDKII 236 F L+ + L L + +I D + GSV ++ + L +K++ Sbjct: 174 AFKMLTNDELIAHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLLGQVLALGSEKLL 233 Query: 237 SS-YIDLIHIPRQEYALQKMQQI 258 ++ + ++ MQ I Sbjct: 234 EEDVRSILGLAGRDVFFTLMQAI 256 >gi|27379628|ref|NP_771157.1| DNA polymerase III subunit delta' [Bradyrhizobium japonicum USDA 110] gi|27352780|dbj|BAC49782.1| bll4517 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 11/339 (3%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P RLFGH + E L Y SGR+ HA L G QGIGKATL +R A VL + Sbjct: 14 HPRETSRLFGHREAETALLSAYRSGRIPHAWLIGGPQGIGKATLAYRMARFVLAHGQPLA 73 Query: 67 APVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V+ DP +Q+A+ + L L + N + G RTVITVDE R F Sbjct: 74 DVVQRAESLAVDPDDAVARQVAAESHGGLLTLERTANDR-GVMRTVITVDETRETISFFG 132 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N NAANALLK LEEPPQ+ LF+L+SHA +L+TI+SRC Sbjct: 133 STAAAEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIQSRCRK 192 Query: 184 IKFNSLSENNLYKALEQLKIMGW-DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 ++ L + + A + + D A+ GSVARA+ +L D K+ L Sbjct: 193 LRLRPLGTDEVISAAAEAAGLAPTDLALREAAEASEGSVARALTLLGGDALKLQQRTAAL 252 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS--AKAAALSGQLEEAD 299 + +P+ + +++ + D L + D+ +A I+ I + I + A A + L Sbjct: 253 LARLPQVDP--RELHTLGDSLGTSDR-VALAAFIDGIDRWIAERLHADEANANQNLPRLA 309 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 ++A+++ +V+ YNL+R+ ++F + + Sbjct: 310 RLAEVWEKIVRAARDTETYNLERKPLVFSVFGWLADATR 348 >gi|319947251|ref|ZP_08021484.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis ATCC 700641] gi|319746493|gb|EFV98753.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis ATCC 700641] Length = 558 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 128/318 (40%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E I L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQEVIATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + +L D + + + N VDEIR IR Sbjct: 65 NQKGGEPCNDCY------ICEAITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAPHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ +++L L++ I + + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKTPAIQDHLKAVLDKEGIDYEEEAVAIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 Q A+E+ + A D + + + +A L+ + Sbjct: 226 LTAGA----------QLTTATAEEITGSISQEALDLYVAALSAQDATAALDQ-LNLIFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ + Sbjct: 275 GKNMARFVTDLLQYLRDL 292 >gi|146319281|ref|YP_001198993.1| DNA polymerase III subunits gamma and tau [Streptococcus suis 05ZYH33] gi|146321485|ref|YP_001201196.1| DNA polymerase III subunits gamma and tau [Streptococcus suis 98HAH33] gi|253752319|ref|YP_003025460.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84] gi|253754145|ref|YP_003027286.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7] gi|253756079|ref|YP_003029219.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407] gi|145690087|gb|ABP90593.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 05ZYH33] gi|145692291|gb|ABP92796.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 98HAH33] gi|251816608|emb|CAZ52246.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84] gi|251818543|emb|CAZ56374.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407] gi|251820391|emb|CAR46990.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7] gi|292558914|gb|ADE31915.1| DNA-directed DNA polymerase [Streptococcus suis GZ1] gi|319758715|gb|ADV70657.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14] Length = 555 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 21/285 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L Q G++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD--CDKI 235 +F S+ ++ + L + ++ + + A G + A+ IL + Sbjct: 170 QRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQD 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 +++ +L+ + L D A L + Sbjct: 230 QQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQ 274 >gi|322382239|ref|ZP_08056152.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153820|gb|EFX46188.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 559 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 20/270 (7%) Query: 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 G + I + L R HA LF G +G GK + +A V ++ P C+ Sbjct: 2 GQKHITQTLQNSLREQRFTHAYLFSGPRGTGKTSTAKIFAKAVNCMHGPAEEPCNECSA- 60 Query: 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIM 135 ++ A+ D + + + N V+EIR IR + ++V + Sbjct: 61 -----CIRITQGAVMDVIEIDAASNR---------GVEEIRDIRDKVKYAPTEVRYKVYI 106 Query: 136 IDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLY 195 ID V + A NALLK+LEEPP+ V+FIL + + +TI SRC F +S Sbjct: 107 IDEVHMLTTEAFNALLKTLEEPPEHVIFILATTEPHKLPATIISRCQRFDFRRISLEEQV 166 Query: 196 KAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY-IDLIHIPRQEY 250 + L +Q I D ++ + G + A+ IL S + + Sbjct: 167 QRLRFVCKQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAAGSITVADVVAMTGGL 226 Query: 251 ALQKMQQIADELLSQDQKIAFDFLIEFILK 280 A ++ +++A + +D + + + F+ + Sbjct: 227 ASEQFERLARSVKEKDLGTSLEIIDSFMQE 256 >gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum magnetotacticum MS-1] Length = 597 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 125/320 (39%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+ HA + G +G+GK T A + Sbjct: 12 VLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTARIIARALNC 71 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P DPC + +A D L + + V++IR Sbjct: 72 VGTDGKGGPT----IDPCGVCEHCRAIAEDRHVDILEMDAASRT---------GVNDIRE 118 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + ++V +ID V ++ A NALLK+LEEPP+ V FI + I T+ Sbjct: 119 IIEGVRYRPTSARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVTV 178 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + L + E + + + AA GSV + +L D Sbjct: 179 LSRCQRFDLRRVEMEVLSRHFEAIAAKEGAEIEPAALKLIARAADGSVRDGLSLL----D 234 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS + Q+ D L D+ FD L + ++K +A ++ Sbjct: 235 QAISHGAGAVTET----------QVRDMLGLADRARVFDLL-DAVMKGDVPTALDQ-ITD 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 Q A + +++ VH Sbjct: 283 QYAAGADPAVVLQDMLELVH 302 >gi|114570003|ref|YP_756683.1| DNA polymerase IIIsubunit delta' [Maricaulis maris MCS10] gi|114340465|gb|ABI65745.1| DNA polymerase III, delta prime subunit [Maricaulis maris MCS10] Length = 349 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 7/333 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSK 66 P LFGHE E+ + + SGR+HHA + G +G+GKA+L +R A VL P Sbjct: 18 PRERYDLFGHEAAERAFATAWDSGRLHHAWMITGPRGVGKASLAWRAARRVLGARPMPEA 77 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P+ DP K + + A D L L + K +WR ITV+E RR +F +++ Sbjct: 78 GPLGTSAEDP---VCKVIEAQATPDLLVLRRPWDDKRKRWRGEITVEEARRAPHFFEMSS 134 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G WRV ++D D MN NAANALLK+LEEPP++ + L++H + +TIRSRC + Sbjct: 135 GGGGWRVCIVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRLAL 194 Query: 187 NSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIP 246 + + + LEQ A G+ RA+ ++ ++ + ++L+ Sbjct: 195 RAPDIDATAEWLEQTGGAADTGAAMAASRLAGGAPGRALALIAGGGVELAAD-VNLLVDR 253 Query: 247 RQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYF 306 + ++++A+ L + Q+ D E + I A+ +G+ + + Sbjct: 254 GAAASDADIRKLAERLSLKGQEEMRDLFYEVLANAIRLQARDRGEAGR--DTTAWLDCWR 311 Query: 307 SLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 ++ V + LD +Q I L + R+ Sbjct: 312 NINTLVRDANGLYLDPKQTILSALGQVRDVARR 344 >gi|325696611|gb|EGD38500.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK160] Length = 556 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LEQ I + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + D+ +L + L++ D A D L Sbjct: 230 NLLTTDIAEEITGSISLGALDAYVAALIAHDAVTALDNL 268 >gi|224825855|ref|ZP_03698959.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum 2002] gi|224602079|gb|EEG08258.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum 2002] Length = 657 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 132/331 (39%), Gaps = 33/331 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ R+HHA L G +G+GK T+ A + Sbjct: 26 VLARKWRPKRFADLVGQEHVVRALTNALAGERLHHAYLLTGTRGVGKTTIARILAKSLNC 85 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C+ +Q+ + D L + + N +D IR + Sbjct: 86 EAGVGAEPCGECSA------CRQIDAGRFVDLLEIDAASNT---------GIDNIREVLE 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +G ++V +ID V ++++A NA+LK+LEEPP V FIL + + T+ SR Sbjct: 131 NAQYAPTSGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSR 190 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 CL +++ + L + ++ + AA GS+ A+ +L Sbjct: 191 CLQFSLRNMTPQQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLLDQAIAYGV 250 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKMQQ------IADELLSQDQKIAFDFLIEFILKEI 282 + + + + + L+ + + IA+ ++ + FD + + + Sbjct: 251 GKVEEGGVRAMLGAVDRAYLYTLLEALAEADGPRLIAEAKALAERGVGFDSALGELALLL 310 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVH 313 + A A + + D A+ +L + + Sbjct: 311 QQIALAQTVPAAITGDDPDAEAVLALAQLIA 341 >gi|328676240|gb|AEB27110.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida Fx1] Length = 546 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 138/312 (44%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Sbjct: 66 IGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L D+ IS Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL----DQAIS 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + +++Q+ + S++ + +I+ K I + K AL+ + Sbjct: 227 FCSGELKQ-------AQIKQMLGIIDSEEVYNIINAIIDNDPKAILPAIKNLALTESSAD 279 Query: 298 A--DQIAQIYFS 307 A D+IA+I+F+ Sbjct: 280 AVLDKIAEIWFA 291 >gi|241762403|ref|ZP_04760482.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373090|gb|EER62739.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 628 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 110/284 (38%), Gaps = 32/284 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + A + Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALNC 72 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K DPC + +A D + + + + VD+IR I Sbjct: 73 ---VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT---------GVDDIRDI 120 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ Sbjct: 121 VESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVL 180 Query: 179 SRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC +S L + ++ + + AA GSV + IL D+ Sbjct: 181 SRCQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL----DQ 236 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 I+ I + + L D+ + L++ + Sbjct: 237 AIAHSSGSI----------LAADVREMLGLSDRGVIKSLLVDLL 270 >gi|51891151|ref|YP_073842.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] Length = 570 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 74/344 (21%), Positives = 129/344 (37%), Gaps = 46/344 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I + L GR+HHA L G +G GK T+ A V Sbjct: 6 LYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C +++ S D + + + N +DEIR +R Sbjct: 66 NPQDGEPCNEC------EACRRITSGEALDLIEIDAASNR---------GIDEIRDLRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ ++V +ID V + A NALLK+LEEPP VLF+L + + TI SRC Sbjct: 111 VNFAPVELKYKVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + LS + + L ++ + + A G + A+ +L D++++ Sbjct: 171 QAFDYRRLSADEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLL----DQVMA 226 Query: 238 SY------IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 +D+ L + + LL D A +L E + Sbjct: 227 YAAEGEITLDMTLAVLGTAPLDQFLALDGHLLRGDVGAALLWLDEMV------------- 273 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + Q+ + + + L+ + L ++A E Sbjct: 274 ----RAGKDLRQLVRDYLAHLRDLLLVKLEAGAQVLGLPAEALE 313 >gi|86160055|ref|YP_466840.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter dehalogenans 2CP-C] gi|85776566|gb|ABC83403.1| DNA polymerase III, tau subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 606 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 127/318 (39%), Gaps = 37/318 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS +G++ HA LF G +G+GK T A + Sbjct: 5 VLARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C P ++A D + + + N VD +R I Sbjct: 65 EQGPTAEPCGVCTP------CVEIAEGRAVDVVEIDAASNN---------GVDNVRDIVE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V +++ A NALLK+LEEPP V F+L + + TI SR Sbjct: 110 AVKYRPARDRFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ + L + + + V A G + A+ +L D++ Sbjct: 170 CQRFDFRRLTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLL----DQVR 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA-ALSGQL 295 ++ D P + +A+ L + D + ++ + AL + Sbjct: 226 AACGDA---PGDD-------AVAEALGAVDAAAVSRIAAALVGRDGAALLREIEALHDRG 275 Query: 296 EEADQIAQIYFSLVKRVH 313 E ++A+ LV+ + Sbjct: 276 LEVKRLAE---ELVRHLR 290 >gi|327438120|dbj|BAK14485.1| DNA polymerase III, gamma/tau subunits [Solibacillus silvestris StLB046] Length = 583 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 124/322 (38%), Gaps = 35/322 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 R + P + + G +++ L + + HA LF G +G GK + +A + Sbjct: 8 RVYRPQSFREMSGQTHVKRTLQNALLASKTTHAYLFSGPRGTGKTSTAKIFAKALNCENA 67 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + P C P + + D + + N V+E+R I + Sbjct: 68 PASEPCNEC------PTCLSITEGSHTDVIEFDAASNS---------RVEEMRDIIEKVR 112 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 ++V +ID V ++ +A NALLK+LEEPP+ +FIL + + +TI SRC Sbjct: 113 FAPANARFKVYIIDEVHMLSTSAFNALLKTLEEPPEHAVFILATTEPHKLPATIISRCQR 172 Query: 184 IKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F LS ++ + LE + + + + AA G + A+ +L D+++S Sbjct: 173 FDFKRLSSIDIVERMKVVLEDIGMGYDEQALKAIAQAAAGGMRDALSLL----DQVVSFS 228 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 + + + + Q +D I K++ + ++ + + Sbjct: 229 NEHVQLDDVLLVTGSV----------SQDAFYDIAISLQQKDVAQVL--GSVENLIADGK 276 Query: 300 QIAQIYFSLVKRVHAFSMYNLD 321 + ++ + + D Sbjct: 277 EPLRLAEDFITFFRDLLLLKTD 298 >gi|288799735|ref|ZP_06405194.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332983|gb|EFC71462.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp. oral taxon 299 str. F0039] Length = 591 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + + L + ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPASFDTVVGQKALTETLKNAIKANKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + C+ F +Q + + L + N +V+ I+ + Sbjct: 66 FTPTAQGEACNHC--ESCAAFNEQRS----FNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ ++ LE Q I + A G + A+ I Sbjct: 171 RCQIYDFERMTVQDIVNHLESVAKQEGITYESEALTIIAEKADGGMRDALSIFDQTA 227 >gi|293365608|ref|ZP_06612317.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis ATCC 35037] gi|307703557|ref|ZP_07640499.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis ATCC 35037] gi|291315976|gb|EFE56420.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis ATCC 35037] gi|307622964|gb|EFO01959.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis ATCC 35037] Length = 552 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNNCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + ++ + I +L + L QD A D L Sbjct: 230 NALTTAISEEIT---GTISLSALDDYVAALSQQDVSKALDSL 268 >gi|324993075|gb|EGC24995.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK405] gi|324995619|gb|EGC27531.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK678] Length = 556 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKEGEPCNECY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVAALDNL 268 >gi|238751045|ref|ZP_04612541.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380] gi|238710735|gb|EEQ02957.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380] Length = 651 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 38/353 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 5 VLARKWRPKTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + + K V++ R + Sbjct: 65 ETGITATPCGICAN------CQEIEQGRFVDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL + + LE++ I + AA GS+ A+ + D Sbjct: 170 CLQFHLKVIDVEIIRAQLEKILLAEHISSDARALQLLARAADGSMRDALSLADQAIAMGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEI 282 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 230 GHVTTATVSHMLGTLDDEQPLAIIEALVSADGARVMAQIEQAASRGVDWENLLVETLSLL 289 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ A I L + ++ Q+ + +L R+ Sbjct: 290 HRIAMVQLLPSMLDN--HYATIEPRLRELARTLPPADI---QLYYQILLVGRK 337 >gi|296116792|ref|ZP_06835398.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter hansenii ATCC 23769] gi|295976593|gb|EFG83365.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter hansenii ATCC 23769] Length = 690 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 121/321 (37%), Gaps = 23/321 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L + GR+ HA + G +G+GK T A + Sbjct: 50 VLARKYRPTTFDDLIGQDTTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALNC 109 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +P P + + D + + + VD++R I Sbjct: 110 TGPDGQGGP--TADPCGVCPNCVAILADRHPDVMEMDAASRT---------GVDDVREII 158 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 G +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ S Sbjct: 159 DSTRFRPIQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPSQVTFIFATTELRKVPVTVLS 218 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + ++ L + + AA GSV + +L D+ Sbjct: 219 RCQTFDLRRVPQDMLAAHFGRVAAAEGVAFAPDALALIARAADGSVRDGLSLL----DQA 274 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ L + + A ++ L D+ + FD L + ++ Sbjct: 275 IAQ-GTLDGEGQGDAAPIDATLVSGMLGQADRGMVFDLLDAVLAGRPDQALTITDE--VF 331 Query: 296 EEADQIAQIYFSLVKRVHAFS 316 + + ++ +H+ S Sbjct: 332 ARGADLGVMLADVLDLIHSVS 352 >gi|19705135|ref|NP_602630.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328310|ref|ZP_06870839.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713068|gb|AAL93929.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154614|gb|EFG95402.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 484 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 5 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 65 NLKETGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 170 CQRYDFKPLDLEEMKLGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTAN 229 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 230 GEEIDLKIAEDTLGITPSSRIKIFLNKLLNENEYDIINELENLANE-SFD--IELFFKDL 286 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K + + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 287 AKYCKNSIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 335 >gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB 1003] gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB 1003] Length = 589 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 119/318 (37%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + + R+ A + G +G GK T A + Sbjct: 16 VLARKYRPATFADLIGQEAMVRTLKNAFAASRIAQAFIMTGIRGTGKTTTARIIAKGLNC 75 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + +A D L + + V +IR I Sbjct: 76 IGPDGTGQPTTE--PCLVCEHCRAIAEGRHVDVLEMDAASRT---------GVGDIREII 124 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + ++V +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 125 ESVNYRAASARYKVYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 184 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L + + + AA GSV A+ +L D+ Sbjct: 185 RCQRFDLRRIEPEVMINHLSKVATKENAQIAEDALALITRAAEGSVRDAMSLL----DQA 240 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS Q+ L D+ D + ILK +A + Sbjct: 241 ISHGAGETT----------ADQVRAMLGLADRARVLDLF-DMILKGDAAAALTELGAQYS 289 Query: 296 EEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 290 DGADPMA-VLRDLAEITH 306 >gi|225181513|ref|ZP_03734955.1| DNA polymerase III, subunits gamma and tau [Dethiobacter alkaliphilus AHT 1] gi|225167761|gb|EEG76570.1| DNA polymerase III, subunits gamma and tau [Dethiobacter alkaliphilus AHT 1] Length = 525 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 19/233 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + + L R+ HA LF G +G GK + A + Sbjct: 5 LYRQWRPQFFADMVGQQHVARTLQNALEQDRLAHAYLFCGPRGTGKTSAAKILAKAINCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S+ P C + + + + D + + N +DEIR +R Sbjct: 65 KGPSREPCNEC------AACRGIQAGRVMDVQEIDAASNR---------GIDEIRELREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V ++D V + + A NALLK+LEEPP +VLF+L + + +TI SRC Sbjct: 110 ARYSPVEVRHKVYIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRC 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 + F+ + ++ + L + D + A G + A+ +L Sbjct: 170 QRLDFHLIGMTDIAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQ 222 >gi|313887429|ref|ZP_07821118.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] gi|312923071|gb|EFR33891.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] Length = 601 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E I L G++ HA LF G +G+GK + A + Sbjct: 7 VSARKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAYLFCGPRGVGKTSAARILARTINC 66 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +C P + + L + N +VD+IRR+ Sbjct: 67 EQLTPQGEACGVC------PNCQAALHQRAFNIYELDAASNN---------SVDDIRRLN 111 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI S Sbjct: 112 EDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILS 171 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC F + + + L + + D + A G + A+ + Sbjct: 172 RCQVYDFKPIPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDR 226 >gi|322385297|ref|ZP_08058942.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus ATCC 51100] gi|321270556|gb|EFX53471.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus ATCC 51100] Length = 554 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICKAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSMAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVTALDNL 268 >gi|303235528|ref|ZP_07322137.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens FB035-09AN] gi|302484265|gb|EFL47251.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens FB035-09AN] Length = 596 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L +G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFASVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPTAEGEACNECES------CKSFDEGRSYNIFELDAASNN---------SVENIKSLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQLGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F +S + L E+ I + + + A G + A+ I Sbjct: 171 RCQIYDFERMSVQGIINHLKQVAEKEGIKYEEQALNVIAEKADGGMRDALSIFDQAA 227 >gi|300853305|ref|YP_003778289.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM 13528] gi|300433420|gb|ADK13187.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM 13528] Length = 553 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 110/283 (38%), Gaps = 24/283 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L + R+ HA LF G +G GK + A V Sbjct: 6 LYREWRPKTFSDVVGQDHITVTLKNQILNHRIAHAYLFSGTRGTGKTSTAKILAKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ + D + + + +++I+ + Sbjct: 66 NLQDGEPCNEC------EMCKKINAGISIDVIEMDAASKR---------RLEDIKDVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKYKVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + + ++ L + I D + + G++ A+ IL + Sbjct: 171 QKFDFRRIKSSEIFNRLRCIVSEQGIFADDRSLNLIARICDGAMRDALSILDQAISMGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 ++++ + E L+ I ++ + ++ D ++ Sbjct: 231 KVEYDDVVNMLGLVTNENLLRLTDSIIEKNVESSMRVIDDIVL 273 >gi|255327658|ref|ZP_05368724.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296] gi|255295332|gb|EET74683.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296] Length = 957 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 125/341 (36%), Gaps = 46/341 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + D + + + + VD R +R Sbjct: 65 QGPTPTPCGVC--DSCRELSR--DGGGSLDVIEMDAASHG---------GVDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ V FI + +L TIRSR Sbjct: 112 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH-------- 229 F + L L+ Q ++ V A GSV ++ IL Sbjct: 172 HHYPFRLVPPEVLLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQLMAGASS 231 Query: 230 --------------YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 Y +++ I+ + + ++ QD + + L+ Sbjct: 232 QNGIEYDRAVALLGYTHAQLLDEVIEALGAKDAPTLFGAVSRVVAT--GQDPRRFVEDLL 289 Query: 276 EFILKEICKSAKAAALSGQL-----EEADQIAQIYFSLVKR 311 E + I A A S L ++ +++AQ +L +R Sbjct: 290 ERLRDLIVVKAVPQAASQILQGVPQDQLERLAQQAQALGER 330 >gi|331266204|ref|YP_004325834.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis Uo5] gi|326682876|emb|CBZ00493.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis Uo5] Length = 552 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVDGEPCNNCY------ICQAVTEGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ ++ + I + + A G + A+ IL Sbjct: 170 QRFEFKSIRTQDIKDHIQAILSKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + ++ + I +L + L QD A D L Sbjct: 230 NALTTAISEEIT---GTISLSALDDYVAALAQQDVPKALDSL 268 >gi|327334774|gb|EGE76485.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL097PA1] Length = 941 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|58039074|ref|YP_191038.1| DNA polymerase III subunits gamma and tau [Gluconobacter oxydans 621H] gi|58001488|gb|AAW60382.1| DNA polymerase III subunit gamma/tau [Gluconobacter oxydans 621H] Length = 652 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 137/376 (36%), Gaps = 50/376 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T A + Sbjct: 40 VLARKYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTARIIARALNC 99 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P +P P + + D L + + VD++R I Sbjct: 100 VGPDGKGGP--TADPCGVCPNCTAILADRHPDVLEMDAASRT---------GVDDVREII 148 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +V +ID V ++RNA NALLK+LEEPP +V FI + + T+ S Sbjct: 149 EATRFRPMQARMKVFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVPVTVLS 208 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ L + + + + AA GSV + +L + Sbjct: 209 RCQRFDLRRVPQSLLAGHFHNIAVKEGATLSEDALALIARAADGSVRDGLSLLDQAIAQG 268 Query: 236 IS---SYIDLIHIPRQEYALQKMQQI-----ADELLSQDQK------------------- 268 S + D++ + + + + AD L DQ Sbjct: 269 ASDADAVADMLGLADRGLVFDLLDALMAGKPADALDLTDQAYARGADLGVLLADLLDLLH 328 Query: 269 -----IAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR 323 A L E + + AAL+ +L A + + + L+K V DRR Sbjct: 329 LISRLKAIPSLREGRDLPEAERTRGAALADRLSNAV-LGRAWQILLKGVQEVETA-PDRR 386 Query: 324 QMIFHLLSKARECNDL 339 Q +L + + L Sbjct: 387 QAAEMVLIRLCHASLL 402 >gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5] Length = 749 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 110/307 (35%), Gaps = 28/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + I L ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFASVVGQKHITSTLKNAIERAQLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 C + + L + N +V++IR + Sbjct: 66 LSPNGAEACNECES------CRSFNEGRSLNIHELDAASNN---------SVEDIRTLIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G + V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SR Sbjct: 111 QVRIIPQVGRYSVFIIDEVHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C FN + + + L+ Q I + + + A G + A+ + DK + Sbjct: 171 CQIYDFNRIRVEDSVEYLKYIAGQENISADEESLNLIAQKADGGMRDALSMF----DKAV 226 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S + L + + + LL+ + + K A L Sbjct: 227 SFCGTTLDYRNVAQTLNVLDYDTYFSVTEMLLAGNYVDVLVTFDTVLSKGFSGQTFTAGL 286 Query: 292 SGQLEEA 298 + + + Sbjct: 287 NRHMRDL 293 >gi|298291755|ref|YP_003693694.1| DNA-directed DNA polymerase [Starkeya novella DSM 506] gi|296928266|gb|ADH89075.1| DNA-directed DNA polymerase [Starkeya novella DSM 506] Length = 344 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 167/332 (50%), Gaps = 10/332 (3%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P RL GHE+ + + + +GR+ HALL G +GIGKATL + A VL A Sbjct: 17 PRERTRLIGHEEAQTMVRAAWDAGRLPHALLLGGAEGIGKATLAYTIARFVL---SGGAA 73 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 P DP P +Q+A+ + D L L N +GK ++I +++R++R F TA Sbjct: 74 PAHSLTVDPSHPAARQVAALSHPDLLVLRRVPN-DSGKLPSMIPAEQVRKVRSFFGSTAA 132 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 G WRV ++D +D MN ANALLK+LEEPP + LF+L+SHA +L TIRSRC + Sbjct: 133 LGGWRVCIVDTLDEMNAQGANALLKTLEEPPSRSLFLLVSHAPGRLLPTIRSRCRMVPLR 192 Query: 188 SLSENNLYKALEQLKIMGWDSKRDF---VKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 +L+ + ALE L + D R A+ GSV A+ +L D + ++ L+ Sbjct: 193 ALTGEEVVAALEDLADVLPDLDRSRFTEAAEASGGSVREALSLLSGDGLAVRNATSVLLD 252 Query: 245 IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQI 304 + + + + ++L D+ A + + + + A S + A ++ ++ Sbjct: 253 -SLPDVDPKALHALGEKL-QGDRGGALESFVSTVEDWVSDHATGRRQSTAVRLA-RLPEV 309 Query: 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + + + +YNLDR+ ++F + + E Sbjct: 310 WEKVRRAAVDADVYNLDRKTLVFRIFASLDEA 341 >gi|56707355|ref|YP_169251.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis SCHU S4] gi|110669825|ref|YP_666382.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis FSC198] gi|224456423|ref|ZP_03664896.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis MA00-2987] gi|254370941|ref|ZP_04986946.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|254874189|ref|ZP_05246899.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56603847|emb|CAG44823.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis SCHU S4] gi|110320158|emb|CAL08206.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis FSC198] gi|151569184|gb|EDN34838.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|254840188|gb|EET18624.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158487|gb|ADA77878.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis subsp. tularensis NE061598] Length = 546 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 32/312 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + ++HHA LF G +G+GK TLG A + Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + +++ D + + + V+E + I Y Sbjct: 66 TGVTAEPCNKCEN------CVAINNNSFIDLIEIDAASRT---------GVEETKEILYN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V +++ + NALLK+LEEPP+ V FIL + I TI SRC Sbjct: 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + +S+ ++ L + I + +++ A GS+ A+ +L Sbjct: 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I E +++Q+ + S++ + + + K I + K AL+ + Sbjct: 223 ---QAISFCGGELKQAQIKQMLGIIDSEEVYSIINAITDNDPKAILPAIKNLALTESSAD 279 Query: 298 --ADQIAQIYFS 307 D+IA+I+F+ Sbjct: 280 VVLDRIAEIWFA 291 >gi|225868888|ref|YP_002744836.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. zooepidemicus] gi|225702164|emb|CAW99865.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. zooepidemicus] Length = 558 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q SG++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVKGEPCNHCD------ICRDITTGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + +L L++ I + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKQAAICEHLAAILDKEGIAYETEALHLIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D Q IA+E+ A D ++ ++ + A A L + Sbjct: 226 LSFDN----------QVTLAIAEEITGSISISALDDYVQHLIGQKTSQA-LANLETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ Sbjct: 275 GKSMSRFATDLLTYFRDL 292 >gi|33862332|ref|NP_893892.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9313] gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9313] Length = 606 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 107/300 (35%), Gaps = 21/300 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G + I LS S R+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLNCLNCD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C K +A+ D + + + N VD IR + Sbjct: 71 QPTPEPCGNC------ELCKSIAAGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + L + LE + I V A G + A +L Sbjct: 176 RFDFRRIPLEALEQHLEMIATREAIPIEPEALHVVAQRAQGGLRDAESLLDQLSLLPGPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + Q++ ++A+ L D + + + A L+ L + Sbjct: 236 KAEAVWELMGAVPEQELLKLAEALAQADPLSLLETCRNLLNRGRDPGALLQGLAAVLRDL 295 >gi|148244580|ref|YP_001219274.1| DNA polymerase III tau and gamma subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326407|dbj|BAF61550.1| DNA polymerase III tau and gamma subunit [Candidatus Vesicomyosocius okutanii HA] Length = 523 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + +K L + +HH LF G +G+GK ++ +A + Sbjct: 7 VLARKYRPHSFTELVGQTNTKKTLINALNANNVHHGFLFTGTRGVGKTSIARIFAKSINC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C ++ D + L + + VD +R I Sbjct: 67 EKGVSSTPCGKC------STCIEIDKGQSIDLIELDAASHT---------GVDNMRSILE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ ++ NALLK+LEEPP+ V F+L + + TI SR Sbjct: 112 NTQYMPSKNRYKIYLIDEVHMLSNSSFNALLKTLEEPPEHVKFLLATTNPQKLPVTILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL L+ + + L+ + + + + GS+ A+ +L D+ I Sbjct: 172 CLQFTLQQLTHDEILGQLKFIMDSEALSYEELALSQIANFGKGSMRDALSLL----DQSI 227 Query: 237 SSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEF 277 S + + L + + L +QD K +F+ + Sbjct: 228 SYGKGTVTSADIKTMLGLVHHGDIITLTTHLFNQDAKSVINFIKDL 273 >gi|302343842|ref|YP_003808371.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii DSM 2075] gi|301640455|gb|ADK85777.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii DSM 2075] Length = 532 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 138/365 (37%), Gaps = 46/365 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R P ++ G E + L+ SGR+ HA F G +G+GK ++ A + Sbjct: 5 VLARKHRPATFSQVVGQEHVTATLAGAIASGRVAHAFCFTGPRGVGKTSVARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C +++ D + + N V+++R +R Sbjct: 65 QQGPTDQPCGVC------VHCREIDEGRAVDVQEIDAASNS---------RVEDVRELRE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + RV ++D V +++ A NALLK+LEEPP+ +FIL + + + TI SR Sbjct: 110 VIRFRPQSARHRVTILDEVHMLSKAAFNALLKTLEEPPEHAVFILATTDAHKVPLTILSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L+ L + L + + A GSV ++ +L D+++ Sbjct: 170 CQRYDFRRLAPRVLTEHLAGVCQAEGFDLPPESLALLAREADGSVRDSLSLL----DQVL 225 Query: 237 S---------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL---------IEFI 278 S + L+ + E + + A+ +L+ D + + ++ Sbjct: 226 SVGRQGLRHQDVVQLLGLIDHEM----VWRTAEAVLAADAGQVLELVSRVYAAGGEMQAF 281 Query: 279 LKEICKSAKA-AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + + AA AD + + ++ + IF L+ E Sbjct: 282 YGALMEHFRNLAAAKSAPPGADLFGLTAEEIAELSRQAQAHSPETLHEIFDHLAAGEEMF 341 Query: 338 DLYFR 342 + Sbjct: 342 RRASQ 346 >gi|110003914|emb|CAK98254.1| putative dna polymerase III gamma/tau subunits protein [Spiroplasma citri] Length = 690 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 139/338 (41%), Gaps = 37/338 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G +I K L + HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAINCI 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D + + N VDEIR IR Sbjct: 66 NLDNGNPCNECAS------CKEINRAGAVDVFEIDAASNN---------GVDEIREIRNN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L ++V +ID + + +A NALLK+LEEPPQ V+FIL + S I +TI SRC Sbjct: 111 VQLLPTMTKYKVYIIDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRC 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ENN+ L++ +I + + + A GS ++ IL Sbjct: 171 QQYNFRKISKVELENNIINILQKEEIKYDLTAIKEIALLADGSARDSLSILE-------- 222 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +I + L+ + I + + ++E+ E+ ++K +G + Sbjct: 223 ---QVIMFSDRNVTLENVNIIFATVSKTIKLKLLKDILEYKTTEVLIASKKIYQAGS--D 277 Query: 298 ADQIAQIYFSLVKRVHAF-SMYNLDRRQMIFHLLSKAR 334 + + ++K + F NL + LLS+ + Sbjct: 278 FEVLTLNLLDILKEIFEFKQTNNL----IFLSLLSEEQ 311 >gi|162149236|ref|YP_001603697.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter diazotrophicus PAl 5] gi|161787813|emb|CAP57411.1| putative DNA polymerase III tau subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 629 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 30/323 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 M+ R + P L G + + L + GR+ HA + G +G+GK T A + Sbjct: 1 MLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALNC 60 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + + D L + + VD++R Sbjct: 61 VGPDGTGGPT----ADPCGVCANCVAILADRHPDVLEMDAASRT---------GVDDVRE 107 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I G +V +ID V ++RNA NALLK+LEEPP +V F+ + + T+ Sbjct: 108 IIEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTV 167 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + +++L ++ + AA GSV + +L D Sbjct: 168 LSRCQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLL----D 223 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ + A +++AD L D+ FD L E +L A A Sbjct: 224 QAIAQG----SVEGDGAAPIGAERVADMLGLADRGRVFDLL-EAVLAGQPDRALAITDEA 278 Query: 294 QLEEADQIAQIYFSLVKRVHAFS 316 AD + + +++ VH S Sbjct: 279 HARGAD-LGVMLGDVLELVHTVS 300 >gi|327469511|gb|EGF14980.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK330] Length = 556 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIITHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDVVAALDNL 268 >gi|238795502|ref|ZP_04639017.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969] gi|238720621|gb|EEQ12422.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969] Length = 655 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 125/334 (37%), Gaps = 35/334 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANSLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C ++ D + + + K V++ R + Sbjct: 66 TGITATPCGTCAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SRC Sbjct: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYDC 232 L + + LE++ I + AA GS+ A+ + D Sbjct: 171 LQFHLKVIDVEVIRALLEKILQLEHISSDARALQLLARAADGSMRDALSLTDQAVAMGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEIC 283 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 231 SITTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQVEQAASRGVDWENLLVETLSLLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L+ A I L + Sbjct: 291 RIAMVQLLPSMLDN--HYATIEPRLRELARTLPP 322 >gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium BAL199] gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium BAL199] Length = 610 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 121/320 (37%), Gaps = 32/320 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L + R+HHA + G +G+GK T A + Sbjct: 22 VLARKYRPQTFEDLVGQETLVRTLRNAFAQNRIHHAFVLTGVRGVGKTTTARIVAKGLNC 81 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P +A D L + + VD+IR I Sbjct: 82 IGPDGTGGPTMT--PCGTCDNCVAIAGDRHVDVLEMDAASRT---------GVDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V ++D V + RNA NALLK+LEEPP+ V FI + + T+ S Sbjct: 131 ESVRYRPVSARYKVYIVDEVHMLTRNAFNALLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + L + E++ + + AA GS + IL D+ Sbjct: 191 RCQRFDLRRIDVAVLSELFEKVCAAEAVEAEAEALRMIARAADGSARDGLSIL----DQA 246 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 ++ + Q+ D L D++ +D + I ++ + Sbjct: 247 MALATGPVT----------AVQVRDMLGLVDRERVYDLFEAVMAGRISEALDVLRM--LY 294 Query: 296 EEADQIAQIYFSLVKRVHAF 315 + + L++ HA Sbjct: 295 DGGADPVVVIQDLMELTHAI 314 >gi|157165121|ref|YP_001467001.1| DNA polymerase III subunits gamma and tau [Campylobacter concisus 13826] gi|112800927|gb|EAT98271.1| DNA polymerase III subunit tau [Campylobacter concisus 13826] Length = 554 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 137/357 (38%), Gaps = 33/357 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G E + K L+ R+ HA LF G +G GK + +A ++ Sbjct: 4 LALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALVCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D + + + + K +D+IR + Sbjct: 64 KGPTSRPCEVCAQ------CVMANESRHMDIIEMDAASHRK---------IDDIRELIEQ 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V + + A NALLK+LEEPP V FIL + + +T+ SR Sbjct: 109 TKYAPTAARYKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRT 168 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 +F +S + K LE + + + + + GS+ + +L Y Sbjct: 169 QHFRFKQISRYEIVKHLEFILSKEGVSYEREALEILARSGGGSLRDTLTLLDQAIIYGAG 228 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKSA 286 I S + + +++QI + + + D+ + E I+ EI + Sbjct: 229 NITKSSVAAM---LGLLDPSRIEQIIEHVANADKNAIRVLVTELETYEPEMIIDEILANL 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 K L + + I + +F ++ + + + D ++ +L E +L D Sbjct: 286 KQRFLDNDPKFSLLIYERFFRILAQAKSMLSVSSDNGFVLMLMLFMMIEALNLQDID 342 >gi|313764794|gb|EFS36158.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA1] gi|314930699|gb|EFS94530.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL067PA1] gi|328759443|gb|EGF73059.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA2] Length = 982 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 135 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 194 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 195 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 358 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 417 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 418 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 468 >gi|322389826|ref|ZP_08063368.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 903] gi|321143486|gb|EFX38922.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 903] Length = 558 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVARTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNNCY------ICESITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ + LE + I + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKLPDIVQHLENILATEGIAYEADAVQIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + IA+E+ A D + IL +A L+ + Sbjct: 226 LTAGS----------ELTAAIAEEITGSISLAALDQYVAAILDHDATAALDQ-LAIIFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ + Sbjct: 275 GKNMARFVADLLQYLRDL 292 >gi|288817749|ref|YP_003432096.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus TK-6] gi|288787148|dbj|BAI68895.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus TK-6] gi|308751348|gb|ADO44831.1| DNA polymerase III, subunits gamma and tau [Hydrogenobacter thermophilus TK-6] Length = 483 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 126/329 (38%), Gaps = 52/329 (15%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-N 61 R + P + + + G E +++ L ++ A +F G +G GK T+ + N Sbjct: 6 ARKYRPKFFKDVVGQEPVKRILLNAVRLQKVSSAYIFAGSRGTGKTTVARLLTKSLNCIN 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C + + D + + + + +D+IR IR Sbjct: 66 LQESGEPCGQCEN------CLSIDRGSFPDLIEIDAASSR---------GIDDIRAIRDA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S T G ++V ++D + + A NALLK+LEEPP + +FIL + I+ TI SRC Sbjct: 111 VSYTPIKGRYKVYILDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKIIPTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----- 232 + F LS+ + + L ++ I + + + G + A+ +L Sbjct: 171 QRLIFTKLSQEEIVQRLKHICQEENISYDEKSLITIAKLSDGGMRDAVSLLDQVSTYAEG 230 Query: 233 ---DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + ++ ++ ++ R L+ LL A DFL + + Sbjct: 231 NIKEGVLEEFLGIVSQERVREFLR-------MLLESRVDEAIDFLRQITTRGF------- 276 Query: 290 ALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + + + +L + +Y Sbjct: 277 ----------NLVRFWDALEDEIRMILLY 295 >gi|154253552|ref|YP_001414376.1| DNA replication ATPase [Parvibaculum lavamentivorans DS-1] gi|154157502|gb|ABS64719.1| ATPase involved in DNA replication [Parvibaculum lavamentivorans DS-1] Length = 387 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 165/367 (44%), Gaps = 38/367 (10%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPD 63 P L G E E+ L + + SGRMHHA L G +GIGKATL +R A L Sbjct: 17 HPREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEA 76 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 A R N P Q+A+ + + L + + KT K +TVI VDE+RRI +F Sbjct: 77 ARAAGARDLNISPDEGVFHQVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFFG 136 Query: 124 LTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 LTA G WRV++ID D MN N+ANALLK+LEEPP LF+++SH +L TIRSRC Sbjct: 137 LTATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCR 196 Query: 183 SIKFNSLSENNLYKALEQLKIMGWDSKRDF--------------VKIAAYGSVARAIKIL 228 +++ L+E ++ +E + ++ + A GS RA+ I Sbjct: 197 TLRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALSIA 256 Query: 229 HYDCDKIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 + L+ +PR + A + AD+ + A++ +IE + + + + Sbjct: 257 AGGGLGLYKELAGLLAGLPRLDIA--AVHAFADKAGRKGADDAYETMIELLTHWLQRLVR 314 Query: 288 --------------AAALSGQLEE---ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLL 330 A +L D+ +++ + + N DR+ +I ++ Sbjct: 315 TGAGLHPGPDIVAGEGAAMARLAAGGSLDRWVEVWEKINQSTARGEALNTDRKLVILNVF 374 Query: 331 SKARECN 337 S Sbjct: 375 SMLEAAA 381 >gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS 21A-A] gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS 21A-A] Length = 590 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAYLFCGPRGVGKTTTARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPVSDGEACNECES------CKAFNEGRSYNIFELDAASNN---------SVENIKELM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP +++FIL + IL TI S Sbjct: 111 EQTRIPPQIGKYKVFIIDEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC F +S ++ K L E+ I +S + + A G + A+ I Sbjct: 171 RCQIYDFERMSVADIIKHLEKVAEKENITYEESALNVIAEKADGGMRDALSIFDQ 225 >gi|34762904|ref|ZP_00143886.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887431|gb|EAA24519.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 490 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G +I K L + M HA LF G +G+GK T+ A V Sbjct: 11 LYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCL 70 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 N + P C K + D + + + N ++DEIR ++ Sbjct: 71 NLKENGEPCNECKN------CKAINEGRFSDLIEIDAASNR---------SIDEIRSLKE 115 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ G +V +ID + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 116 KINYQPVEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISR 175 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C F L + LE + + D + + GS+ +I IL Sbjct: 176 CQRYDFKPLDLKEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTAN 235 Query: 231 ---DCDKIISSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 KI + + R + L K+ I +EL + + +FD IE K++ Sbjct: 236 GKEIDLKIAEDTLGITPSSRIKIFLNKILNENEYDIINELENLANE-SFD--IELFFKDL 292 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 K K A + +++ D+ +I ++ + F + D++ + + ++++ Sbjct: 293 AKYCKNAIVKKEID-IDKGLKIISTIYDVIGKFK-FEDDKKLVGYVIVAEI 341 >gi|329942685|ref|ZP_08291464.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci Cal10] gi|313847864|emb|CBY16859.1| DNA polymerase III subunit gamma/tau [Chlamydophila psittaci RD1] gi|325507379|gb|ADZ19017.1| DNA polymerase III subunits gamma and tau [Chlamydophila psittaci 6BC] gi|328814945|gb|EGF84934.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci Cal10] gi|328914526|gb|AEB55359.1| DNA polymerase III, subunit gamma/tau [Chlamydophila psittaci 6BC] Length = 443 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 30/278 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + L R+ HA LF G +G GK TL +A + Sbjct: 8 VSSRKYRPQTFSEMLGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKALNC 67 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C K+++S D + + + + +++IR+I Sbjct: 68 KELTPEHEPCNQC------CVCKEISSGTSLDVIEIDGASHR---------GIEDIRQIN 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI S Sbjct: 113 ETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHYD---- 231 RC + + E + LE + + G ++ R+ + AA GS+ A + Y Sbjct: 173 RCQKMHLKRIPETMIVDKLESISQAGGIETSREALLPIARAAQGSLRDAESLYDYVIGLF 232 Query: 232 ----CDKIISSYIDLIHIPRQEYALQ--KMQQIADELL 263 ++++ + L+ + + Q+ A+ LL Sbjct: 233 PNSLSPELVADALGLLSQDTLATLSECIRTQKYAEALL 270 >gi|209542216|ref|YP_002274445.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] gi|209529893|gb|ACI49830.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] Length = 323 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 24/331 (7%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P L G ++ + +GR+HHA L G +GIGKAT+ F A +L+ Sbjct: 5 PRDAPDLVGQQEARRAFEDALRTGRLHHAWLLTGTEGIGKATMAFWMARLLLKGT----- 59 Query: 68 PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 DP SP +++A+ + D L ++ ++ K + R I D++R I FL TA Sbjct: 60 -------DPDSPAARRIAAGSHADLLTIARGVDEKRQRLRAEIVADDVRPIGQFLHRTAA 112 Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 WRV+++D + MNR+AANA+LK LEEPP + + IL +L TIRSRC ++K Sbjct: 113 EDGWRVVIVDGAEYMNRSAANAILKLLEEPPPRAILILTCATPGRLLPTIRSRCRTLKLG 172 Query: 188 SLSENNLYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIH 244 LS +++ L + D+ D + A+GS RA+ +L D + + ++ Sbjct: 173 PLSPADMHAVLS---TVVEDAAPDDIARVVPLAHGSPGRALALLAGDGGALGALVARVMD 229 Query: 245 IPRQEYALQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE--ADQ 300 P A++ +M +IA+ +L ++ F + + I +AA E AD+ Sbjct: 230 APAGPGAMREGEMYEIAEAVLKRENG--FSVFFDLLCDAISVRTRAAVRGTIPAERPADR 287 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLS 331 + ++ LV +NLD+ Q I L+ Sbjct: 288 MVDLWRRLVHLRAETEQFNLDKHQAILSGLT 318 >gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1] gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1] Length = 600 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 113/314 (35%), Gaps = 31/314 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 16 VLARKYRPRDFSQLIGQEPMVRTLTNAFAAGRIAQAWMLTGVRGVGKTTTARILARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + + + D + + + + +D+IR I Sbjct: 76 RTEAVDRP--SVDLSVPGEHCEAILEGRHVDVIEMDAASHT---------GIDDIRDIIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 125 QVRYAPVSARYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + + L + + + AA GS+ A I D+ I Sbjct: 185 CQRFDLRRIDSGLIKQHLAHIGDLEGVDADSDALAMIARAAEGSMRDAQSIF----DQAI 240 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + D L D+ D + ++ + Q + Sbjct: 241 AHSSGKVT----------AETVRDMLGLADRARVIDLFEHLMKGDVAAALAEYR--AQYD 288 Query: 297 EADQIAQIYFSLVK 310 A + L + Sbjct: 289 AGADPAAVLTDLAE 302 >gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM 16973] Length = 592 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAYLFCGPRGVGKTTCARIFARAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C K ++ L + N +V+ I+ + Sbjct: 66 MNPTTEGEACGTCES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGKYKVFIIDEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ + L EQ I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVADTIAHLKRVAEQEGIGYEEEALAVIAEKADGGMRDALSIFDQSA 227 >gi|322388028|ref|ZP_08061634.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis ATCC 700779] gi|321141049|gb|EFX36548.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis ATCC 700779] Length = 554 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSIAQYKVYIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSILDQA 223 >gi|242309372|ref|ZP_04808527.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum MIT 98-5489] gi|239523943|gb|EEQ63809.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum MIT 98-5489] Length = 573 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 73/351 (20%), Positives = 142/351 (40%), Gaps = 26/351 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P+ L G E + + LS S R+ HA LF G +G GK + +A + Sbjct: 8 LALKYRPMDFDELVGQEAVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFARALQCE 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C + + D + L + + K +D+IR + Sbjct: 68 NGPKAKPCGVCA----NCVAANPHKMSHIDIIELDGASSRK---------IDDIRDLIEQ 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 115 TKYRPNMGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 174 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 +F +S+ +++ L+ + I D + + + GS+ + +L Sbjct: 175 QHFRFKRISDKSIFNHLKSILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNY 234 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + +S + LI+ ++ + ++L + + F++ E +L E+ K Sbjct: 235 NITAESCASMLGLINPQSLSDFFDEIFKKDKKVLLETIEGFFEYECEMLLDEMSIFLKDK 294 Query: 290 ALSG-QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 LS + + I +F ++ + D ++ + K E + Sbjct: 295 LLSAEDVRYSPVIVDRFFRIITQAKQLLSLGCDDNFVLTLSIFKMLEALKI 345 >gi|315099548|gb|EFT71524.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA2] Length = 982 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 135 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 194 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 195 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 358 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 417 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 418 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 468 >gi|302381707|ref|YP_003817530.1| DNA polymerase III subunits gamma/tau [Brevundimonas subvibrioides ATCC 15264] gi|302192335|gb|ADK99906.1| DNA polymerase III, subunits gamma and tau [Brevundimonas subvibrioides ATCC 15264] Length = 612 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 64 VLARKYRPRTFEDLIGQEAMVRTLTNAFATGRIAHAFMLTGVRGVGKTTTARLLARALNN 123 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + D + L + + V++IR I Sbjct: 124 ETDVIDRPSLELTAHGRHDAA--IMAGQHMDVMELDAASHT---------GVNDIRDILE 172 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 173 SVRYAPVEARYKVYVLDEVHMLSNQAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 232 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK-- 234 C + L + L ++ + D + AA GSV + +L + Sbjct: 233 CQRFDLRRVEPEILVEHLGRIATKEGMKVEDDALALIARAAEGSVRDGLSLLDQALVQGE 292 Query: 235 -----IISSYIDLIHIPRQEYALQKMQQIA 259 + D++ + + + +QI Sbjct: 293 RGEPVATDTVRDMLGLADRSQTIALFEQIM 322 >gi|313834284|gb|EFS71998.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL056PA1] gi|314974379|gb|EFT18474.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA1] gi|314985375|gb|EFT29467.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA1] gi|315097214|gb|EFT69190.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL038PA1] gi|327447352|gb|EGE94006.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA1] Length = 982 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 135 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 194 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 195 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 358 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 417 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 418 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 468 >gi|110637639|ref|YP_677846.1| DNA polymerase III subunits tau/gamma [Cytophaga hutchinsonii ATCC 33406] gi|110280320|gb|ABG58506.1| DNA polymerase III, tau and gamma subunits [Cytophaga hutchinsonii ATCC 33406] Length = 381 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 30/289 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G I L + + A LF G +G+GK T A + Sbjct: 6 VSARKYRPATFDSVVGQSHITTTLKNAIKNNHLAQAFLFCGPRGVGKTTNARILAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + C K ++A + L + N +VD+IR + Sbjct: 66 TNITADIEACDECES------CKSFNNNASFNIQELDAASNN---------SVDDIRNLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G +++ +ID V ++ A NA LK+LEEPP +FIL + I+ TI S Sbjct: 111 EQVRYPPQYGKYKIYIIDEVHMLSTAAFNAFLKTLEEPPAYAIFILATTEKHKIIPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH----YD 231 RC FN + ++ + L + I + A G++ A+ + + Sbjct: 171 RCQIFDFNRIQIKDIAEHLAGIAVKENIKAEKEALHLIAQKADGALRDALSMFDLIVTFS 230 Query: 232 CDKIISS--YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D I+ ID +HI +Y ++ D L +QD + E + Sbjct: 231 SDNTITYKCAIDNLHILDYDYYF----KLTDMLNTQDVANSLLTFDEIL 275 >gi|194397860|ref|YP_002037501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae G54] gi|194357527|gb|ACF55975.1| DNA polymerase III, subunits gamma and tau [Streptococcus pneumoniae G54] Length = 551 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G E + K L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAXLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQVGGEPCNNCY------ICQAVTDGSLEDVIEMDAASNN---------GVDEIREIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP Q V+FIL + I +TI SR Sbjct: 110 STYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F S+ ++ + LE+ I + + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQG 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +++ ++ + I +L + L QD A L Sbjct: 230 NELTTAISEEIT---GTISLSALDDYVAALSQQDVPKALSCLNLLFD 273 >gi|314916439|gb|EFS80270.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA4] gi|314917280|gb|EFS81111.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA1] gi|314921655|gb|EFS85486.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA3] gi|314955184|gb|EFS99589.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA1] gi|315102222|gb|EFT74198.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA1] gi|327454471|gb|EGF01126.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA3] gi|327456539|gb|EGF03194.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA2] gi|328756234|gb|EGF69850.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA1] Length = 948 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|313813997|gb|EFS51711.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA1] gi|313821300|gb|EFS59014.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA1] gi|314926534|gb|EFS90365.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA3] gi|314980021|gb|EFT24115.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA2] gi|314987438|gb|EFT31529.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA2] gi|315081813|gb|EFT53789.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL078PA1] gi|315107699|gb|EFT79675.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA1] gi|315109896|gb|EFT81872.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA2] gi|327444628|gb|EGE91282.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA2] gi|328758132|gb|EGF71748.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL020PA1] Length = 982 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 135 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 194 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 195 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 358 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 417 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 418 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 468 >gi|317052107|ref|YP_004113223.1| DNA polymerase III subunits gamma and tau [Desulfurispirillum indicum S5] gi|316947191|gb|ADU66667.1| DNA polymerase III, subunits gamma and tau [Desulfurispirillum indicum S5] Length = 548 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 132/352 (37%), Gaps = 39/352 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + I + L GR+ HAL+F G +G+GK ++ A + Sbjct: 5 VYARKYRPRTFAEVVGQQHISRTLLNSIRGGRLAHALIFNGPRGVGKTSMARILAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + A D + + + N +D ++ + Sbjct: 65 MAPVEGEPCGTCEN------CVAIDQGAFLDVVEIDAASNR---------GIDSMKTLIE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +V +ID + R A NA LK+LEEPP +F+L + + TI SR Sbjct: 110 EVDYAPAMGQVKVYIIDEFHMLTREAFNAFLKTLEEPPPHTVFVLATTDLHKVNPTILSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 C F + + + +AL + I + + G + A IL Y Sbjct: 170 CQRHDFRRIPRDEMVQALAHILGNEGIAFETDALQIIATTSEGCMRDAESILDRVVSYCG 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIAD-------ELLSQDQKIAFDFLIEFILKEICK 284 ++I + ++L+ I Q IA L+ Q + D + + +++ + Sbjct: 230 ERISAADVMELVGIATHGMVFGVFQAIAAGDLPRILTLIEQANETGAD--MRQLCRQLLE 287 Query: 285 SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 + + L+ Q + L + AF LD I+ +L REC Sbjct: 288 TTRLVYLATQGIIPVSDEESVEQLQQLGKAFDTLQLD---AIYSML---REC 333 >gi|29830693|ref|NP_825327.1| DNA polymerase III subunits gamma and tau [Streptomyces avermitilis MA-4680] gi|29607805|dbj|BAC71862.1| putative DNA polymerase III gamma and tau subunit [Streptomyces avermitilis MA-4680] Length = 846 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGACQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPAGSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L + L + I D V A GSV Sbjct: 173 HHYPFRLVPPGTLREYLGDVCGRENIPVADGVLPLVVRAGGGSVRDSMSVMDQLLAGAGA 232 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L + ++ S ++ A + + +I + + ++ D L Sbjct: 233 DGVTYAMATSLLGFTDGSLLDSVVEAFASGDGAAAFEVVDRIIEG-GNDPRRFVADLLER 291 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G + D A + + + F L R + + Sbjct: 292 LRDLVILAAVPDAGEKGLI---DAPADVVERMQAQAGVFGAAELSRAADLVN 340 >gi|289424444|ref|ZP_06426227.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] gi|289155141|gb|EFD03823.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] Length = 967 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 120 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 179 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 180 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 226 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 227 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 286 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 287 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 342 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 343 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 402 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 403 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 453 >gi|332176655|gb|AEE12345.1| DNA polymerase III, subunits gamma and tau [Porphyromonas asaccharolytica DSM 20707] Length = 616 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G E I L G++ HA LF G +G+GK + A + Sbjct: 20 VSARKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAYLFCGPRGVGKTSAARILARTINC 79 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +C P + + L + N +VD+IRR+ Sbjct: 80 EQLTPQGEACGVC------PNCQAALHQRAFNIYELDAASNN---------SVDDIRRLN 124 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G ++V +ID V ++ A NA LK+LEEPP V+FIL + +L TI S Sbjct: 125 EDVYIRPQQGKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILS 184 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC F + + + L + + D + A G + A+ + Sbjct: 185 RCQVYDFKPIPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDR 239 >gi|257452707|ref|ZP_05618006.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. 3_1_5R] gi|317059248|ref|ZP_07923733.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R] gi|313684924|gb|EFS21759.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R] Length = 478 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 28/273 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P Q + G ++I + L + ++ A LF G +G+GK T+ A V Sbjct: 5 LYRKYRPASFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSVNCL 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C + D + + + N +DEIR ++ Sbjct: 65 APKEDGEACGVCEN------CLSFQEGSFLDLIEIDAASNR---------GIDEIRLLKE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ + G +V +ID V + + A NALLK+LEEPP V+FIL + IL TI SR Sbjct: 110 KINYQPSQGKKKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEPDKILPTIISR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +LS ++ L+ Q + + ++ + A+ GS+ AI IL ++ Sbjct: 170 CQRYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILER---LLV 226 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLS 264 S+ I + E L QKM+Q LL Sbjct: 227 SASEKKISLEESEKILGMTPVQKMEQFLHCLLG 259 >gi|327329176|gb|EGE70936.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL103PA1] Length = 948 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|325689862|gb|EGD31866.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK115] Length = 556 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVAALDNL 268 >gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] Length = 607 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 17/282 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L GHE + + L + + R+ HA + G +G+GK T A + Sbjct: 16 VLARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + + +A D + + V +IR + Sbjct: 76 ETETIDRPTVDMPVE--GRHCRAIAESRHPDVYEMDAASRT---------GVGDIRELIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ NA NALLK+LEEPP V FI + + T+ SR Sbjct: 125 GVRYAPIEGRYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSR 184 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +L L E+ + D + AA GSV A+ +L + Sbjct: 185 CQRFDLRRFDITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQALVQKA 244 Query: 237 SSYIDLIHIPRQEYALQKMQ--QIADELLSQDQKIAFDFLIE 276 I I + + Q + ++ D K A E Sbjct: 245 GEAIGAADIRDMLGLVDRTQTWDLLGAAMAGDAKTALRLFRE 286 >gi|256828009|ref|YP_003156737.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium baculatum DSM 4028] gi|256577185|gb|ACU88321.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium baculatum DSM 4028] Length = 614 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 128/322 (39%), Gaps = 31/322 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G + +++ LS+ +GR+ A LF G +G+GK TL +A + Sbjct: 9 RYRPQSFAEVAGQDAVKRILSRAASTGRVAPAYLFSGTRGVGKTTLARIFAKALNCQNGP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C P +Q+ + D + + + N VD +RR++ + Sbjct: 69 ASEPCNQC------PICRQITLGSAVDVVEIDGASNT---------GVDNVRRLKEDVGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++VI+ID +++ A NALLK+LEEPP V FI+ + TI SRC Sbjct: 114 APLECRYKVIIIDEAHMLSKQAFNALLKTLEEPPGHVTFIMATTEPEKFPQTIISRCQHF 173 Query: 185 KFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F L + L + L+ + S V GSV + +L ++++ Sbjct: 174 VFKRLPQAELVRHLDGVLKRESFPAEPSAVTLVARRGAGSVRDGMSLL----GQVMALGS 229 Query: 241 DLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG-- 293 D + + L ++ + + S+D + L + + + + L+G Sbjct: 230 DSLTLADVREVLGLAGGEVFVRLIECVQSRDLQGLHALLTQILDQGVDLGFFLRELAGCW 289 Query: 294 -QLEEADQIAQIYFSLVKRVHA 314 L Q+ S++ Sbjct: 290 RNLFLLHQMGDAARSIIDLPAE 311 >gi|281356099|ref|ZP_06242592.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis ATCC BAA-548] gi|281317468|gb|EFB01489.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis ATCC BAA-548] Length = 615 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 67/356 (18%), Positives = 133/356 (37%), Gaps = 46/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + G + + + L R HA LF G +G+GK TL +A + Sbjct: 6 VIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAYLFVGPRGVGKTTLARIFAKAMNC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + +A D + + + TG ++R + Sbjct: 66 LDPQDGEPCCRCES------CRAIAEERSLDVMEVDAASRNTTG---------DMRELAE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V +++ A N LLK++EEPP V FI + +L TI SR Sbjct: 111 DVLTQPVGGRYKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISR 170 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C + + + L + ++ DS + AA G + A +L Sbjct: 171 CQRFDLLPIPTRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFS 230 Query: 231 -------DCDKIISSY-------IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 ++++S + +D + + A ++ I L + + +E Sbjct: 231 QGDDTPITGEQVLSLFGLTDRTDLDALMVAMLRNAPGEVVSIVSRLARKGKN------LE 284 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY-NLDRRQMIFHLLS 331 + ++ ++ +A L L + + V R + D Q++ +++ Sbjct: 285 TLFDDLLEAMRAVQLCAILPDPSDLIDEGEEAVARYRKLAALAKPDTIQILLEIIA 340 >gi|314969354|gb|EFT13452.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA1] Length = 982 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 135 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 194 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 195 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 241 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 242 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 301 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 302 HHYPFRLVPPKVLVEYLAELCGKGGIAVAPAVLPLVVRAGGGSVRDSLSVL----DQLLG 357 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 358 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 417 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 418 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 468 >gi|313772740|gb|EFS38706.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL074PA1] gi|313832224|gb|EFS69938.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL007PA1] gi|314976987|gb|EFT21082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL045PA1] gi|327331270|gb|EGE73009.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA2] gi|327450460|gb|EGE97114.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA2] gi|328761179|gb|EGF74721.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL099PA1] Length = 948 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 434 >gi|154175283|ref|YP_001408570.1| DNA polymerase III subunits gamma and tau [Campylobacter curvus 525.92] gi|112803916|gb|EAU01260.1| protein EbsC [Campylobacter curvus 525.92] Length = 553 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 141/355 (39%), Gaps = 29/355 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G E + K L+ GR+ HA LF G +G GK + ++ ++ Sbjct: 4 LALKYRPKNFDELIGQEAVSKSLTHALDEGRISHAYLFSGLRGSGKTSSARIFSKALVCE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P D + + + + K +D+IR + Sbjct: 64 KGPTSRPCETC------PQCIMANESRHMDIIEMDAASHRK---------IDDIRELIEQ 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID V + + A NALLK+LEEPP V FIL + + +T+ SR Sbjct: 109 TKYKPAMARYKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 168 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F + +N++ K LE + I + + + GS+ + +L Sbjct: 169 QHFRFKQIGKNSIIKHLEFILSKEGISYEREALEILARSGRGSLRDTLTLLDQAIIYGAN 228 Query: 232 --CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-EFILKEICKSAKA 288 ++S + L+ R E L + ++D+ ++ + E I+ E+ + K Sbjct: 229 NITQSSVASMLGLLDPSRIEQILSLV-MLSDKEGLRELVAELEIYEPEMIIDELIANLKQ 287 Query: 289 AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 + + + I + +F ++ + + + D ++ +L E +L D Sbjct: 288 KFIDNDPKFSLLIYERFFRILAQAKSMLNVSSDNGFVLSIMLFMMVEALNLKSID 342 >gi|313815375|gb|EFS53089.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA1] Length = 948 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC 73102] gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC 73102] Length = 707 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 119/334 (35%), Gaps = 38/334 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I L+ + ++ A LF G +G GK + A + + Sbjct: 9 KYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAKSLNCLKSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 RPTAEPCGVCD------VCQGITKGYALDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + K L + I V + G + A +L D +++ Sbjct: 174 RFDFRRIQLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLL--DQLGLLAG 231 Query: 239 YI------DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 + DL+ ++ L + IA + L L+ + + Sbjct: 232 VVTPDRVWDLVGTVSEQDLLGLLNAIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYR 291 Query: 288 AAALSGQLEEADQIA----QIYFSLVKRVHAFSM 317 ++ + Q + +LV+ F M Sbjct: 292 DLLIAKTAPNRHDLVACTQQTWTALVEFAQYFDM 325 >gi|90417680|ref|ZP_01225592.1| DNA polymerase III, delta prime subunit domain protein, putative [Aurantimonas manganoxydans SI85-9A1] gi|90337352|gb|EAS51003.1| DNA polymerase III, delta prime subunit domain protein, putative [Aurantimonas manganoxydans SI85-9A1] Length = 352 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 173/337 (51%), Gaps = 8/337 (2%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 +D P LFGH L+ +GR+HHA LF+G +G+GKAT F +A H+L Sbjct: 15 LDGVPPPAATPTLFGHRREFAELASAEAAGRLHHAWLFQGPRGVGKATTAFAFARHLLSP 74 Query: 62 P--DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 ++ PV DP P ++Q+A ++++ K +RT ITV+ +R++ Sbjct: 75 AYAKGTEPPVF----DPADPAMRQIALGTYPGLVHVTRPPVEKGTGFRTQITVEGVRKLN 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 F T + WR+ +IDP D MNR+AANALLK LEEPP + +F++++H +L TIRS Sbjct: 131 RFFQATGSRTSWRIAIIDPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIRS 190 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 RC +++F L +++L A + + GS +AI ++ Y +I S Sbjct: 191 RCRTLRFEPLGDHDLAAATAAALPSAGKDEIAAALPLSEGSARQAISLIAYGGIEIRQSL 250 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEAD 299 LI R ++ + +AD L + ++ A++FLI +L ++++A G A Sbjct: 251 QTLIAADRPDW--NSIHSMADALTQKGREQAYEFLITALLSATAEASEACLSRGDSAGAA 308 Query: 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 +A ++ R+ + YNLDR+Q + L + C Sbjct: 309 SLAALWQDETSRLREAAAYNLDRKQALLTLFDRFYRC 345 >gi|62184957|ref|YP_219742.1| DNA polymerase III subunits gamma and tau [Chlamydophila abortus S26/3] gi|62148024|emb|CAH63776.1| DNA polymerase III subunit gamma/tau [Chlamydophila abortus S26/3] Length = 443 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 30/278 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + L R+ HA LF G +G GK TL +A + Sbjct: 8 VSSRKYRPQTFAEMLGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKALNC 67 Query: 61 NP-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C K+++S D + + + + +++IR+I Sbjct: 68 KELTPEHEPCNQC------CVCKEISSGTSLDVIEIDGASHR---------GIEDIRQIN 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I STI S Sbjct: 113 ETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPSTILS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDF---VKIAAYGSVARAIKILHYD---- 231 RC + + E + L + + G ++ R+ + AA GS+ A + Y Sbjct: 173 RCQKMHLKRIPETMIVDKLASISQAGGIETSREALLPIARAAQGSLRDAESLYDYVIGLF 232 Query: 232 ----CDKIISSYIDLIHIPRQEYALQ--KMQQIADELL 263 ++++ + L+ + + Q+ A+ LL Sbjct: 233 PTSLSPELVADALGLLSQDTLATLSECIRTQKYAEALL 270 >gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3] Length = 633 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 116/310 (37%), Gaps = 30/310 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L+ + +GR+ A + G +G+GK T A + Sbjct: 16 VLARKYRPKSFSDLIGQEAMVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 76 KTKDIDQPTTL--FDTLGEHCTQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 125 QIRYRPVAARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L Q+ K+ D + AA GSV A+ IL D+ I Sbjct: 185 CQRFNLRRIEATVLLTHLRQIAQLEKVEAQDQALFMIAHAAEGSVRDALSIL----DQAI 240 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M + DQ D E I+K +A + Sbjct: 241 AYGNGKVD----AIAVRVMLGLT------DQSRIIDLF-ESIMKGNIVNALYELRNQYNA 289 Query: 297 EADQIAQIYF 306 AD A + Sbjct: 290 GADPFAILTE 299 >gi|302559824|ref|ZP_07312166.1| DNA polymerase III, subunit gamma and tau [Streptomyces griseoflavus Tu4000] gi|302477442|gb|EFL40535.1| DNA polymerase III, subunit gamma and tau [Streptomyces griseoflavus Tu4000] Length = 459 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 121/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 28 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 87 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 88 KGPTPTPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 134 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 135 AFFGPAGSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 194 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L + L + +I + V A GSV Sbjct: 195 HHYPFRLVPPGTLREYLGEVCGKEEIPVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGE 254 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 255 QGVTYAMATSLLGYTDGSLLDSVVEAFATGDGAAAFEVVDRVIEG-GNDPRRFVADLLER 313 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + + + F L R + + Sbjct: 314 LRDLVILAAVPDAAEKGLI---DAPADVIERMQAQAGTFGAAELSRAADLVN 362 >gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] Length = 599 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPGEDGEACNACES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N + L+ + I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVGNTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAA 227 >gi|324990827|gb|EGC22762.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK353] Length = 556 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVAALDNL 268 >gi|114330605|ref|YP_746827.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha C91] gi|114307619|gb|ABI58862.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha C91] Length = 527 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 134/327 (40%), Gaps = 33/327 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L R+HHA LF G +G+GK T+ A + Sbjct: 7 LARKWRPKDFTGLVGQEHVVRALVNSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNCE 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + D + L + N + VD +R + Sbjct: 67 QGVTATPCGKC------AACLAIDQGNFVDLIELDAASNTQ---------VDAMRELLDN 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T ++V +ID V ++++A NA+LK+LEEPP+ V FIL + I T+ SRC Sbjct: 112 AQYAPVTARYKVYLIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 L + + + L ++ +I+ + + AA GS+ A+ +L + Sbjct: 172 LQFNLKQIPPSLIVTRLSEILSMERIVADATALKLLAKAAKGSLRDALSLLDQAIALGNA 231 Query: 238 SYID-----LIHIPRQEYALQKMQQIADELLS---------QDQKIAFDFLIEFILKEIC 283 + + ++ Q++ ++ +A++ + + ++FD ++ + + Sbjct: 232 TVDEKNTRVMLGALDQDHLFALLEALAEQDGAALLAIADQLEAASVSFDSALQDLAALLH 291 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVK 310 + A + L+E + +LVK Sbjct: 292 RLAIVQTVPQMLDEEQPESDRLLALVK 318 >gi|289428998|ref|ZP_06430678.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|289157999|gb|EFD06222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|313806717|gb|EFS45222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA2] gi|313811221|gb|EFS48935.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA1] gi|313824758|gb|EFS62472.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA2] gi|313828817|gb|EFS66531.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA2] gi|313840337|gb|EFS78051.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL086PA1] gi|314961562|gb|EFT05663.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA2] gi|314989198|gb|EFT33289.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA3] gi|315082833|gb|EFT54809.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA2] gi|315086408|gb|EFT58384.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA3] gi|315087895|gb|EFT59871.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA1] gi|327333903|gb|EGE75620.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA3] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 434 >gi|160900335|ref|YP_001565917.1| DNA polymerase III subunits gamma and tau [Delftia acidovorans SPH-1] gi|160365919|gb|ABX37532.1| DNA polymerase III, subunits gamma and tau [Delftia acidovorans SPH-1] Length = 731 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 74/372 (19%), Positives = 144/372 (38%), Gaps = 47/372 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C ++ S D+ L + N VDE+ Sbjct: 65 QGADGQGGITATPCGVC------AACTEIDSGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLGQVLGQEGVASEPQALRLLSRAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYI-DLIHIPRQEYALQKMQQIAD----------ELLSQDQKIAFDFLIE 276 + + ++ + + ++ + + + ++ +A E L ++ A L E Sbjct: 230 IAFGSGQLQEATVRQMLGSVDRSHVFRLIEALAQADGQVVVETSEALRRNGLSAASTLEE 289 Query: 277 FILKEICKSAKAAALSGQLEEA-DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + + A A A+ +A D A L + D Q+++ + R Sbjct: 290 -MCAVLQRMAVAQAVPQMAADASDPEAAEIARLAVLMPR------DETQLLYSICLHGRA 342 Query: 336 CNDLYFRDFYAI 347 L ++ A+ Sbjct: 343 ELGLAPDEYAAL 354 >gi|315094384|gb|EFT66360.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL060PA1] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|314965630|gb|EFT09729.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA2] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|315078844|gb|EFT50866.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA2] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|282853259|ref|ZP_06262596.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|282582712|gb|EFB88092.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|313793235|gb|EFS41302.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA1] gi|313802801|gb|EFS44017.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA2] gi|314964646|gb|EFT08746.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA1] gi|314982793|gb|EFT26885.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA3] gi|315091446|gb|EFT63422.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA4] gi|315105106|gb|EFT77082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA2] gi|327457184|gb|EGF03839.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL092PA1] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|295129771|ref|YP_003580434.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] gi|50839298|gb|AAT81965.1| DNA polymerase III subunit gamma [Propionibacterium acnes KPA171202] gi|291376500|gb|ADE00355.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] Length = 957 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 110 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 169 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 170 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 216 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 217 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 276 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 277 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 332 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 333 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 392 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 393 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 443 >gi|290959184|ref|YP_003490366.1| DNA polymerase subunit [Streptomyces scabiei 87.22] gi|260648710|emb|CBG71823.1| putative DNA polymerase subunit [Streptomyces scabiei 87.22] Length = 793 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 70/361 (19%), Positives = 128/361 (35%), Gaps = 41/361 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L + L + KI ++ V A GSV ++ +L D Sbjct: 173 HHYPFRLVPPGTLREYLAEVCGKEKIPVDEAVLPLVVRAGAGSVRDSMSVMDQLLAGSTD 232 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 + ++ S +D + + D ++ + ++ D L Sbjct: 233 EGVTYAMATSLLGYTDGSLLDAVVESFAAGDGAAAFDVVDHVIEEGNDPRRFVADLLERL 292 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH-LLSKAREC 336 I + A G + D ++ + + F L R + + L++ R Sbjct: 293 RDLVILAAVPDAVEKGLI---DAPVEVLERMQAQAGVFGAAELSRAADLVNEGLTEMRGA 349 Query: 337 N 337 N Sbjct: 350 N 350 >gi|327461339|gb|EGF07670.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1] Length = 556 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 25/281 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIETQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +++YI +L + L+S D A D L Sbjct: 230 NRLTTYIA--EEITGSISLGALDAYVAALISHDAVAALDNL 268 >gi|319777692|ref|YP_004137343.1| DNA polymerase iii subunits gamma and tau [Mycoplasma fermentans M64] gi|318038767|gb|ADV34966.1| DNA polymerase III subunits gamma and tau [Mycoplasma fermentans M64] Length = 604 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 26/256 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A V Sbjct: 6 LYRKYRPKSFDDVKGQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVVNCG 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + C +++ + D + + + N V+EIR +R Sbjct: 66 HGEDLTKL-------CESCIEKADQN--FDVIEMDAASNN---------GVNEIRDLRDK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 108 IQHSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRV 167 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S N + + L++ KI DS ++ A G + A+ I D+ + Sbjct: 168 QRYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSI----VDQAAA 223 Query: 238 SYIDLIHIPRQEYALQ 253 D I + YA Sbjct: 224 YGNDKISLKDVMYAFG 239 >gi|125717830|ref|YP_001034963.1| DNA polymerase III subunits gamma and tau [Streptococcus sanguinis SK36] gi|125497747|gb|ABN44413.1| DNA-directed DNA polymerase III chain, putative [Streptococcus sanguinis SK36] gi|325687936|gb|EGD29956.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK72] Length = 556 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD--KI 235 +F S+ ++ +E Q I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 D+ +L + L++ D A D L Sbjct: 230 NRLTTDIAEEITGSISLGALDAYVAALIAHDAVTALDNL 268 >gi|328947062|ref|YP_004364399.1| DNA polymerase III subunits gamma/tau [Treponema succinifaciens DSM 2489] gi|328447386|gb|AEB13102.1| DNA polymerase III, subunits gamma and tau [Treponema succinifaciens DSM 2489] Length = 572 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 116/288 (40%), Gaps = 28/288 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P L G E + + L S ++ HA LF G +G GK + A + Sbjct: 5 VTATRRRPQNFDNLIGQEFVAETLKNSIQSKKIAHAYLFSGPRGCGKTSTARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K++ + + D + + + N +V+++R+I+ Sbjct: 65 QKGPTAFPCGEC------AACKEITAGSSLDVIEIDGASNT---------SVNDVRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N+ +++ +ID V ++ +A NALLK++EEPP +FI + + +TI+SR Sbjct: 110 EVLFPPNSCRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYCIFIFATTEIQKVPATIKSR 169 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F + + + L +L I D ++ + GS+ + + Sbjct: 170 CQQFNFRLVPIEKVKQQLAEAANELGIKAEDEALYWIARESTGSMRDSYTLFDQVAAFSG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 + D + + + + +I + +D + A L E++ Sbjct: 230 GEITYEKIRDKLGLVGVDC----LNEIFGFCVKKDSENALLKLDEYLQ 273 >gi|314959377|gb|EFT03479.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA1] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAGPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|288924767|ref|ZP_06418704.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau [Prevotella buccae D17] gi|288338554|gb|EFC76903.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau [Prevotella buccae D17] Length = 258 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 3 VSARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 62 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 63 EHPHDDGEACNECES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI S Sbjct: 108 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILS 167 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N L ++ I + + + A G + A+ I Sbjct: 168 RCQIYDFERMTVPNTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAA 224 >gi|238810245|dbj|BAH70035.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 612 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 26/256 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A V Sbjct: 14 LYRKYRPKSFDDVKGQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVVNCG 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + C +++ + D + + + N V+EIR +R Sbjct: 74 HGEDLTKL-------CESCIEKADQN--FDVIEMDAASNN---------GVNEIRDLRDK 115 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 116 IQHSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRV 175 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S N + + L++ KI DS ++ A G + A+ I D+ + Sbjct: 176 QRYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSI----VDQAAA 231 Query: 238 SYIDLIHIPRQEYALQ 253 D I + YA Sbjct: 232 YGNDKISLKDVMYAFG 247 >gi|294635357|ref|ZP_06713851.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685] gi|291091244|gb|EFE23805.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685] Length = 681 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 44/356 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 29 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ +++ D L + + K V++ R + Sbjct: 89 ETGITATPCGVCDN------CREIEQGRFVDLLEIDAASRTK---------VEDTRDLLD 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SR Sbjct: 134 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSR 193 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 CL +L + L ++ + + AA GS+ A+ ++ Sbjct: 194 CLQFHLRALDHEQIRAQLAKIAQAESLAADARALQLLARAAEGSMRDALSLMDQAIAMGQ 253 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI---------- 282 +I + D + ++ + + L + D + + + + + + Sbjct: 254 GQITA---DAVSQMLGTLDDEQPLALIEALTAADGALVMERVEQAAGRGVDWENLLLEML 310 Query: 283 ---CKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + A L L+ Q A + L + +L Q+ + ++ R+ Sbjct: 311 TLLHRVAMLQLLPSALD--SQYAAVESRLRELARLLPPADL---QLFYQIMLNGRK 361 >gi|325694344|gb|EGD36257.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK150] Length = 556 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 21/279 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LE+ I + A G + A+ IL Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEREGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 + + D+ +L + L++ D A D L Sbjct: 230 NCLTTDIAEEITGSISLGALDAYVAALIAHDTVAALDNL 268 >gi|229115998|ref|ZP_04245393.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] gi|228667492|gb|EEL22939.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] Length = 541 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 136/338 (40%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 12 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 72 APLSNGEPCQKCAN------CGDINNNKFADILEFDAASNN---------GVEEIRQIRD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 117 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + + L+ + I D + A G + A+ I+ D++I Sbjct: 177 CQQFEFRNIPLQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 232 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 233 AYATNNVTIEDVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 286 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 287 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 312 >gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] gi|167658703|gb|EDS02833.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] Length = 639 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 112/307 (36%), Gaps = 28/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + I L G++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFSSVVGQKHITSTLKNAIERGQLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 C + + L + N +V++IR + Sbjct: 66 LHPEGAEACNACES------CRSFNDGRSLNIHELDAASNN---------SVEDIRSLIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G + V +ID V ++ A NA LK+LEEPP +FIL + I+ TI SR Sbjct: 111 QVRIIPQVGRYSVFIIDEVHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C FN + + + L+ Q I D + + A G + A+ + DK + Sbjct: 171 CQIYDFNRIRVEDSVEYLKYIASQEGITADDESLNLIAQKADGGMRDALSMF----DKAV 226 Query: 237 SSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 S + L + + + LLS + A + + A L Sbjct: 227 SFCGQELRYQEVAQTLNVLDYDTYFSMTETLLSGNYVEALLSFDNVLARGFSGQTFMAGL 286 Query: 292 SGQLEEA 298 + L + Sbjct: 287 NRHLRDL 293 >gi|161611320|ref|YP_162596.2| DNA polymerase III subunits gamma and tau [Zymomonas mobilis subsp. mobilis ZM4] gi|283775348|gb|AAV89485.2| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis ZM4] Length = 628 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 27/283 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + A + Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALNC 72 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K DPC + +A D + + + + VD+IR I Sbjct: 73 ---VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT---------GVDDIRDI 120 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ Sbjct: 121 VESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVL 180 Query: 179 SRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL-----H 229 SRC +S L + ++ + + AA GSV + IL H Sbjct: 181 SRCQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSILDQAIAH 240 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 + + +++ + + ++ + +LL D Sbjct: 241 SSGSILAADVREMLGLSDR----GVIKSLLVDLLEGKGDRVLD 279 >gi|327489199|gb|EGF20992.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1058] gi|328946036|gb|EGG40182.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis SK1087] Length = 556 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 25/281 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + L Q G++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + +L D + + + N VDEIR IR Sbjct: 65 NQKDGEPCNDCY------ICQAITEGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 +F S+ ++ LEQ I + A G + A+ IL + Sbjct: 170 QRFEFKSIKTQDIIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQE 229 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 +++YI +L + L+S D A D L Sbjct: 230 NRLTTYIA--EEITGSISLGALDAYVAALISHDAVAALDNL 268 >gi|313826420|gb|EFS64134.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA1] Length = 948 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 434 >gi|299140394|ref|ZP_07033553.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX8] gi|298597621|gb|EFI53800.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp. MP5ACTX8] Length = 819 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 128/324 (39%), Gaps = 21/324 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L R+ H +F G +GIGK T+ A + Sbjct: 99 VLARKYRPQRFSDVVGQDHVTRTLLNALAQSRIAHGYIFSGHRGIGKTTIARILASALNC 158 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P ++ D + + + N +DEIR +R Sbjct: 159 RTAIGSPERPTPEPCETCESCLEIRLGNAVDVIEIDAATNR---------GIDEIRELRD 209 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ ++D + A NALLK+LEEPP ++F++ + I TIRSR Sbjct: 210 AARYRPSRDKYKIYILDEAHQITDAAFNALLKTLEEPPDHIVFMMATTQPEDIPQTIRSR 269 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F+++ +++ L + I+ ++ + A GS+ A+ I+ D+ I Sbjct: 270 CQHFSFHAVKLDDIVGQLTAISKHENIVVDEATLSLLAEAGDGSMRDALSIM----DQAI 325 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +S + R L +++++ + + + + ++ +G Sbjct: 326 ASA--PLVDGRPALELGQVRELMGSVSNVVYEDVLQAVHANSSADVLAIVNRLLDAGN-- 381 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 A Q+A+ + ++ + NL Sbjct: 382 GAPQLARQFVRYIRNCIVAKITNL 405 >gi|302552517|ref|ZP_07304859.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes DSM 40736] gi|302470135|gb|EFL33228.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes DSM 40736] Length = 627 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPARSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L L + D V A GSV ++ Sbjct: 173 HHYPFRLVPPGTLRDYLAEVCQKENNPVEDGVLPLVVRAGGGSVRDSMSVMDQLLAGAAA 232 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 233 DGVTYAMATALLGYTEASLLDSVVEAFATGDGAAAFEVVDRVIEG-GNDPRRFVADLLER 291 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + + + F L R + + Sbjct: 292 LRDLVILAAVPDAAEKGLI---DAPADVVERMQAQAGTFGAAELSRAADLVN 340 >gi|297564866|ref|YP_003683838.1| DNA polymerase III subunits gamma and tau [Meiothermus silvanus DSM 9946] gi|296849315|gb|ADH62330.1| DNA polymerase III, subunits gamma and tau [Meiothermus silvanus DSM 9946] Length = 485 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 70/329 (21%), Positives = 129/329 (39%), Gaps = 30/329 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R P + G E +++ L +GR+ A LF G +G+GK + A V Sbjct: 4 LYRQARPTTFDEVVGQEHVKEVLLSAIRTGRLAQAYLFSGPRGVGKTSSARLIAQAVNCI 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P +C + + D L + + N +V+++R +R Sbjct: 64 AQADK-PCGVCEG------CRLVREGNHPDVLEIDAASNN---------SVEDVRELRER 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L G +V+++D M+++A NALLK+LEEPP+ V+FI + + TI SR Sbjct: 108 ILLAPLLGSRKVVILDEAHMMSKSAFNALLKTLEEPPEHVIFIFATTEPERMPPTILSRT 167 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F LSE + + L ++ + V A G++ A +L + Sbjct: 168 QHFRFRRLSEAEIVQKLSRILKTMDREAEPAALQLVARIADGAMRDAESLLDRLLALEVP 227 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-FILKEICKSAKAAALS 292 ++ + +P QE + + + Q A + + F + + + A + Sbjct: 228 ITLAQTEAALGLPPQEALWGLAEALEQGQIRQALSDAQNLYTQGFAARTLAQGLLEAFRA 287 Query: 293 G-----QLEEADQIAQIYFSLVKRVHAFS 316 G L ++ LV + A Sbjct: 288 GLYAKMGLGTGPRLESSEEKLVAAMTALD 316 >gi|160872052|ref|ZP_02062184.1| DNA polymerase III subunit tau [Rickettsiella grylli] gi|159120851|gb|EDP46189.1| DNA polymerase III subunit tau [Rickettsiella grylli] Length = 523 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 137/330 (41%), Gaps = 37/330 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L + R+HHA LF G +G+GK TL A + Sbjct: 5 VLARKYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAKCLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C + + ++ D + + + K V++ R + Sbjct: 65 QTQITPEPCNQCIS------CQAIHANRFTDLIEVDAASRTK---------VEDTRDLLA 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + T + G +++ +ID V ++ ++ NALLK+LEEPP V+F+L + + + +TI SR Sbjct: 110 DVHYTPSQGRYKIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSR 169 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +++ N L L++ KI + AA GS+ A+ +L D+ I Sbjct: 170 CLQFHLKTITTVQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLL----DQAI 225 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF---------ILKEI 282 + + L ++ Q+ D L+ +D + + +F ++ E+ Sbjct: 226 AYTNQNLTKQDINTLLGHVAHSEIIQLLDALILEDTAKLWSLVEQFSELGVDFSCVMDEL 285 Query: 283 CKSAKAAALSGQLEEADQIAQIYFSLVKRV 312 ALS + + Q + + Sbjct: 286 LTCLHQMALSQRFKTEVNYTQTIIDFAQTL 315 >gi|47458908|ref|YP_015770.1| DNA polymerase III subunits gamma and tau [Mycoplasma mobile 163K] gi|47458236|gb|AAT27559.1| DNA polymerase III subunit gamma and tau [Mycoplasma mobile 163K] Length = 720 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 37/293 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I L ++ HA LF G +G GK ++ +A + Sbjct: 6 LYRKYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAAALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K + C+ V+ + ++ D + + + N VDEIR +R Sbjct: 66 HEIQKEKI-------CNLCVENLDNN--LDIIEIDAASNN---------GVDEIRELREK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + + ++V +ID + ++A NALLK+LEEPP+ +FIL + I T+ SR Sbjct: 108 VKYSPSQYKYKVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRV 167 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----- 232 F ++ E L + L + I + + A G + A+ I Sbjct: 168 QRFNFKRITLPILEKQLQEVLTKENIRINKNALTLIAKMAEGGLRDALSIADQISIFSNN 227 Query: 233 ---DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 +K + L+ I Q Y L + + +D + +I I Sbjct: 228 NITEKEVDEVFSLVSIEDQIYFLNLIYK-------KDTTTVLRTINNYIESGI 273 >gi|153956411|ref|YP_001397176.1| DNA polymerase III subunits gamma and tau [Clostridium kluyveri DSM 555] gi|219856723|ref|YP_002473845.1| hypothetical protein CKR_3380 [Clostridium kluyveri NBRC 12016] gi|146349269|gb|EDK35805.1| DnaX [Clostridium kluyveri DSM 555] gi|219570447|dbj|BAH08431.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 553 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 114/287 (39%), Gaps = 28/287 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L + R+ HA LF G +G GK ++ A V Sbjct: 6 LYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D + + + K +++I+ + Sbjct: 66 DIQQGEPCNEC------EMCKKINQGISMDVIEMDTASKRK---------LEDIKDVIEN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V ++D V + + A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 VKYPPQEGKYKVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 F + + ++ L + I D + + G++ A+ +L Sbjct: 171 QKFDFRRIKSSEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 +S +D++ + E + + D ++ ++ +++ + + +L Sbjct: 231 KVEYNSIVDMLGLVTNE----NLFHLTDSIIEKNVELSMKVIDDIVL 273 >gi|291438660|ref|ZP_06578050.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] gi|291341555|gb|EFE68511.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] Length = 440 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 120/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 16 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 75 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 76 EGPTPTPCGTCQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPAQSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L L + I + V A GSV Sbjct: 183 HHYPFRLVPPGTLRDYLGEVCAKEDIPVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA 242 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 243 EGVTYAMATSLLGYTDGSLLDSVVEAFATGDGAAAFEVVDRVIEG-GNDPRRFVADLLER 301 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + ++ + F L R + + Sbjct: 302 LRDLVILAAVPDAAEKGLI---DAPADVIERMLAQAGTFGAAELSRAADLVN 350 >gi|283458781|ref|YP_003363423.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18] gi|283134838|dbj|BAI65603.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18] Length = 972 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 124/341 (36%), Gaps = 46/341 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L R++HA LF G +G GK T A + Sbjct: 31 LYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 90 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + D + + + + VD R +R Sbjct: 91 QGPTPTPCGVC--DSCRELSR--DGGGSLDVIEMDAASHG---------GVDHARDLRER 137 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ V FI + +L TIRSR Sbjct: 138 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSRT 197 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH-------- 229 F + L L+ Q ++ V A GSV ++ IL Sbjct: 198 HHYPFRLVPPEVLLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQLMAGASS 257 Query: 230 --------------YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 Y +++ I+ + + ++ QD + + L+ Sbjct: 258 QNGIEYDRAVALLGYTHAQLLDEVIEALGAKDAPTLFGAVSRVVAT--GQDPRRFVEDLL 315 Query: 276 EFILKEICKSAKAAALSGQL-----EEADQIAQIYFSLVKR 311 E + I A A L ++ +++AQ +L +R Sbjct: 316 ERLRDLIVVKAVPQAAGQILQGVPQDQLERLAQQAQALGER 356 >gi|260752672|ref|YP_003225565.1| DNA polymerase III subunits gamma/tau [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552035|gb|ACV74981.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 628 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 122/321 (38%), Gaps = 34/321 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + A + Sbjct: 13 VLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALNC 72 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 K DPC + +A D + + + + VD+IR I Sbjct: 73 ---VGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT---------GVDDIRDI 120 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 + + + ++V +ID V ++++A NALLK+LEEPP V F+ + + T+ Sbjct: 121 VESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVL 180 Query: 179 SRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC +S L + ++ + + AA GSV + IL D+ Sbjct: 181 SRCQRFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL----DQ 236 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 I+ I + + L D+ + L++ + + + Q Sbjct: 237 AIAHSSGSI----------LAADVREMLGLSDRGVIKSLLVDLLEGKGDRVLDHV--KAQ 284 Query: 295 LEEADQIAQIYFSLVKRVHAF 315 + + + L++ +HA Sbjct: 285 YDLGVEPEALLHGLLQLIHAI 305 >gi|161621801|ref|YP_054923.2| DNA polymerase III subunits gamma and tau [Propionibacterium acnes KPA171202] Length = 900 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 53 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 112 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 113 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 159 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 160 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 219 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 220 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 275 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 276 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 335 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 336 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 386 >gi|78355113|ref|YP_386562.1| DNA polymerase III subunit tau [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217518|gb|ABB36867.1| DNA polymerase III, tau subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 577 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 116/287 (40%), Gaps = 28/287 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E ++ LS+ R+ A LF G +G+GK T+ +A + Sbjct: 9 KYRPQTFADVAGQETVKAILSRAAAENRVAPAYLFSGTRGVGKTTIARIFAKALNCTRGP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C +++ D + + + N +D+ +R++ + Sbjct: 69 AAEPCNECEQ------CRKITQGMAVDVVEIDGASNR---------GIDDAKRLKEAIGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 G ++V +ID + R A NALLK+LEEPP V F++ + TI SRC Sbjct: 114 APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPANVTFVMATTEPHKFPVTIVSRCQHF 173 Query: 185 KFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F L+EN +L + LE+ + A GSV ++ +L ++++ Sbjct: 174 IFKRLTENGLAAHLVRILEREGTGYESEAVKLIARRAAGSVRDSMSLL----GQVLALGS 229 Query: 241 DLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEI 282 D + + L Q +AD + QD L + + + + Sbjct: 230 DSLTVADARGILGLAGQELFFRVADAIRRQDCVGVSTVLRDVLDQGL 276 >gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] Length = 668 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 123/322 (38%), Gaps = 31/322 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 18 VLARKYRPHSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 77 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + + D + + + + +D+IR I Sbjct: 78 ETGEIDQP--TIHMAEPGIHCQAIMEGRHVDVVEMDAASHT---------GIDDIREIIA 126 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP+ V F+ + + T+ SR Sbjct: 127 QVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPITVLSR 186 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L+Q+ K+ D + AA GSV ++ + D+ I Sbjct: 187 CQRFDLRRVESATLIGHLKQIAEKEKVEIEDDALRLIARAAEGSVRDSLSL----TDQAI 242 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M +AD + D L E+I+K SA Sbjct: 243 AHGAGAVT----AGAVRDMLGLADRVRVID-------LFEYIMKGDAASALVELRDQYTV 291 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 AD A + L H + Sbjct: 292 GADP-AIVLGDLADFTHLVTTL 312 >gi|282882939|ref|ZP_06291544.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis 315-B] gi|281297350|gb|EFA89841.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis 315-B] Length = 577 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 119/284 (41%), Gaps = 28/284 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ ++ G E + L + + HA LF G +G GK + +A V Sbjct: 5 LYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + ++ D + + + N VD+IR ++ Sbjct: 65 HPIDGNPCNKCKS------CLSILNNTSVDVVEMDAASNN---------GVDDIRDLKDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V +++ A NALLK LEEPP ++FIL + I +TI SR Sbjct: 110 VIYPPTFLKYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 +F+ +S N+ K L+ + D + + G++ A+ +L +D D Sbjct: 170 QKFEFSRVSLENIIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSD 229 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 I I +D++ I E + ++ L++D A + + Sbjct: 230 HISIEKAMDVLGISSSE----SLFELTSAYLNKDAARAISVIDD 269 >gi|260221001|emb|CBA29129.1| hypothetical protein Csp_A10600 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 682 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 143/375 (38%), Gaps = 53/375 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQDHVVQALTNALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + S D+ L + N VDE+ Sbjct: 65 QGVDGQGGITATPCGVCQA------CTDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QALLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L + ++ + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETIREHLTKVLDVEQVSAEAQALRLLARAARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDFL------------ 274 D+ I+ + L + ++ + L + D K D Sbjct: 226 TDQAIAFGSGQLQEATVRQMLGSVDRSYVFRLIEALAAGDGKTVVDTAETLRLNGLSAAS 285 Query: 275 -IEFILKEICKSAKAAAL-SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSK 332 +E + + + A A A+ G L+E D A V + + D Q+++ + Sbjct: 286 TLEEMSTVLQRMAVAQAVGQGALDEGDPEA------VDTARLAAAMSADETQLLYSICLH 339 Query: 333 ARECNDLYFRDFYAI 347 R L ++ A+ Sbjct: 340 GRADLGLAPDEYAAL 354 >gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia JCVIHMP010] gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia JCVIHMP010] Length = 595 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPATFDSVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTTARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPTSEGEACNECES------CKAFNEGRSYNIFELDAASNN---------SVENIKDLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP +V+FIL + IL TI S Sbjct: 111 EQTRIPPQIGKYKVFIIDEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC F +S ++ + L++ I + + + A G + A+ + Sbjct: 171 RCQIYDFERMSVPDIIEHLKRVAAKENITYEEKALNIIAEKADGGMRDALSVFDQ 225 >gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C] Length = 604 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 20/268 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T + + Sbjct: 9 VLARKYRPQNFSDLIGQEAMVRTLNNAFTTGRIAQAWMLTGIRGVGKTTTARILSRALNY 68 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 69 KTKDIDQPTTL--FDTLGEHCAQIIEGRHIDVVEMDAASHT---------GIDDIREIIE 117 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 118 QIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 177 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 C + L L ++ K+ D + AA GSV A+ I + Y Sbjct: 178 CQRFNLQRVETTALVAHLRKISQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAYSN 237 Query: 233 DKIISSYIDL-IHIPRQEYALQKMQQIA 259 K+ ++ + L + + Q + + + + Sbjct: 238 GKVDTTAVSLMLGLTDQSHIIDLFESLM 265 >gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414] gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414] Length = 650 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 114/332 (34%), Gaps = 34/332 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I L+ + ++ A LF G +G GK + A + + Sbjct: 9 KYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 QPTAEPCGVCD------VCQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V ++D ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI--- 235 F + + L + I + A G + A +L + Sbjct: 174 RFDFRRIQLEAMVNHLSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVGEV 233 Query: 236 -ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAKAA 289 DL+ ++ + + IA + L IL+ + + Sbjct: 234 TPDKVWDLVGSVSEQDLIALLNAIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDL 293 Query: 290 ALSGQLEEADQIA----QIYFSLVKRVHAFSM 317 ++ + Q + +LV+ M Sbjct: 294 LIAQTASNRQDLVTCTQQTWTALVELSQKLDM 325 >gi|325846695|ref|ZP_08169610.1| DNA polymerase III, subunit gamma and tau [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481453|gb|EGC84494.1| DNA polymerase III, subunit gamma and tau [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 580 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L SG++ HA LF GE+G GK T +A + Sbjct: 5 LYREYRPQKFSDVLGQERVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P +C K + + D + + + N +D+IR ++ Sbjct: 65 NPIDSSPCGICEN------CKSIEEESTMDVVEMDAASNR---------RIDDIRNLKET 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 110 VVYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRV 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + + L I D +D + A G++ A+ IL D+++S Sbjct: 170 QKFEFNKIGRDDIIKQIDIILNDRNISMEDEAKDLIVKKAKGAMRDALSIL----DQVLS 225 Query: 238 SYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF 277 D + E L + ++ D +LS +QK + + L + Sbjct: 226 IDKDNFLLQDVENILGVVDFYSLDKLVDNILSYNQKDSLEILFKL 270 >gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus PCC 6301] gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942] gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus PCC 6301] gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942] Length = 652 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 21/282 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD- 63 + P L G E I + LSQ R+ A LF G +G GK + A + Sbjct: 9 KYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAKSLNCQQST 68 Query: 64 -FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + +P C + +A D + + + N VD IR + Sbjct: 69 VPTASPCGEC------EACRAIARGNALDVIEIDAASNT---------GVDNIRELIERA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRFKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L ++ I + V A G + A +L Sbjct: 174 RFDFRRIPLQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPPPV 233 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + + +++ Q+ + + + D + + + + + Sbjct: 234 TPEAVWDLLGAVPERQLLQLLEAIAANDPEALLTLIRQLLDR 275 >gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] Length = 606 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 116/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 16 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 75 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 76 IGEDGQGGPTTEPCGKC------EHCTAIMEGRHVDVMEMDAASRT---------GVGDI 120 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + Sbjct: 121 REIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPV 180 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L+++ + + AA GS A +L Sbjct: 181 TVLSRCQRFDLRRIEPEVMIGLLQKIAGAENAQIAEDALALITRAAEGSARDATSLL--- 237 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS Q+ L D+ D LI+ IL+ +A Sbjct: 238 -DQAISHGAGETT----------ADQVRAMLGLADRGRVLD-LIDMILRGDAAAALTELS 285 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + E AD +A + L + H Sbjct: 286 AQYAEGADPLA-VLRDLAEITH 306 >gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1] gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1] Length = 753 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 123/353 (34%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFSEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + S L D L + + VD+ R +R Sbjct: 63 EGPTSTPCGQC---PSCVALGPGGSGNL-DVTELDAASHG---------GVDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F L+ + K +Q + D V A GS ++ IL D Sbjct: 170 HHYPFRLLAPATMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGD 229 Query: 234 K-----------------IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + +I +D + + ++ D ++ A D L Sbjct: 230 EGVTYPRALALLGVTDVALIDDAVDALATGDGAALFGTVDRVMDA-GHDPRRFAVDLLER 288 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + ++ AA G D + + +V L R + H Sbjct: 289 LRDLILMQAVPDAAERG---LVDAPGDVLEHMRAQVQRIGPATLTRYAEVMHA 338 >gi|260434142|ref|ZP_05788113.1| DNA polymerase III subunit delta' [Silicibacter lacuscaerulensis ITI-1157] gi|260417970|gb|EEX11229.1| DNA polymerase III subunit delta' [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 105/361 (29%), Positives = 162/361 (44%), Gaps = 31/361 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 A P RL G + E+ + S R+HH L G +G+GKATL +R A +L D Sbjct: 13 GAPHPRETHRLIGQDAAEQAFLTAFNSERLHHGWLLTGPRGVGKATLAWRIARFLLATED 72 Query: 64 -------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + + DP ++ + A ++ SLN K K R I V++IR Sbjct: 73 AQNDGLFGGTSAPTTLDIDPDHAVAHRVRAGAEPGLAVVTRSLNDKE-KLRNEIVVEDIR 131 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 R+ F L+A G RV+++D D MN NAANALLK LEEPP + +LISH +L T Sbjct: 132 RLSRFFGLSAADGGRRVVIVDAADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLPT 191 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 IRSRC +++ LS ++ AL Q + D + A GSV A+++++ +I Sbjct: 192 IRSRCRTLRLAPLSPADMAAALAQAGAELPPN-PDHLSALASGSVGDAVRLINLGGLEIY 250 Query: 237 SSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA----- 290 + I L+ +P + Q+ +A+ + FD L+ I + + A A Sbjct: 251 AELIGLLATLPGLDR--QRALVLAEAAAQRGASERFDLLLNLIDIALSRLALTGATGTPP 308 Query: 291 --------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 LS ++A Q AQ ++ R NLD ++ + K +E Sbjct: 309 SPEAAPNEAETLVRLSASPQKARQWAQTAANITARARHGQSVNLDPAAVVLDTVFKIQET 368 Query: 337 N 337 Sbjct: 369 A 369 >gi|218674617|ref|ZP_03524286.1| DNA polymerase III subunit delta' [Rhizobium etli GR56] Length = 273 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 110/276 (39%), Positives = 170/276 (61%), Gaps = 4/276 (1%) Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 PD AP + +PDP S +Q+ S A H+ L+L+ ++ KTGK ++ ITVDE+RR F Sbjct: 1 PDPEAAPETIGDPDPASAVSRQIVSGASHNLLHLARPVDEKTGKVKSAITVDEVRRAGKF 60 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S T+ TG WR+++IDP D MNRNAANA+LK LEEPP++ LF+++SHA +L TIRSRC Sbjct: 61 FSQTSGTGNWRIVIIDPADDMNRNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRC 120 Query: 182 LSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYID 241 L +K L+++ + AL L I G V AA GSV A+K+L+Y +II++Y + Sbjct: 121 LPLKLAPLADDAIVAALAHLGISGEGGA---VLSAAKGSVGEALKLLNYGGGEIIAAYDE 177 Query: 242 LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ A + M ++AD L ++ FDF + + +I A+ AA GQ+ A+++ Sbjct: 178 VLSA-EGPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARVAAGEGQIAAAERL 236 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 A++Y + +R+ YNLDR+Q I +L+ ++ Sbjct: 237 ARLYSEITERLTISDAYNLDRKQTIISILADIKQPG 272 >gi|294813917|ref|ZP_06772560.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] gi|294326516|gb|EFG08159.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 481 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 129/351 (36%), Gaps = 38/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 46 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 105 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 106 QGPTPTPCGEC--LSCRDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 152 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 153 AFFGPASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 212 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + + L + L + KI D V A GSV ++ +L D Sbjct: 213 HHYPFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVMDQLLAGATD 272 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEICK 284 + ++ + + + +L + + D + D AF+ + I + ++ + Sbjct: 273 EGVTYAMATALLGYTDGSL--LDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLE 330 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + + +A D + + + AF L R + + Sbjct: 331 RLRDLVILAAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVNA 381 >gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] Length = 622 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 112/317 (35%), Gaps = 29/317 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + SGR+ A + G +G+GK T A + Sbjct: 43 VLARKYRPQNFTDLIGQEAMVRTLRNAFSSGRIAQAYILTGVRGVGKTTTARILARALNY 102 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P A + + + D + + + N ++++IR I Sbjct: 103 EPMDGSAGGPSLDLSVMGKQCRDIIESRHVDVMEMDAASNT---------SINDIREIIE 153 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SR Sbjct: 154 SARYRPVMARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 213 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + + V AA GSV ++ +L D+ I Sbjct: 214 CQRFDLRRVEAGELAAHLAGICAKEGVTIEPEALAIVARAAEGSVRDSLSLL----DQAI 269 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + L D+ D + E+ ++ A Q + Sbjct: 270 AHGGGAVGAEEVRRLLGLA----------DKGRVIDLFEALMKGEMARAL--AEFRDQYD 317 Query: 297 EADQIAQIYFSLVKRVH 313 A I L + H Sbjct: 318 AGADPAVILTDLAEFTH 334 >gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501] gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501] Length = 687 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 87/226 (38%), Gaps = 21/226 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--P 62 + P L G E I L+ S R+ A LF G +G GK + A + Sbjct: 10 KYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVE 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + +P C + +A + D + + + N VD IR I Sbjct: 70 APTASPCGEC------EVCRAIARGSALDVIEIDAASNT---------GVDNIREIIERS 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 115 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQ 174 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 + + + L ++ I V A G + A Sbjct: 175 RFDYRRIPLEAMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDA 220 >gi|283850684|ref|ZP_06367971.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. FW1012B] gi|283573927|gb|EFC21900.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. FW1012B] Length = 580 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 117/299 (39%), Gaps = 28/299 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P + G E +++ LS+ ++ A LF G +G+GK TL A + Sbjct: 9 KYRPQRFADVAGQEAVKRILSRAAAEDKIAPAYLFSGTRGVGKTTLARVLAKALNCETAP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P +C+ +Q+ + D + + + + K VD+ RR++ + Sbjct: 69 TAEPCNVCSQ------CRQITAGVSPDVIEIDAATHGK---------VDDARRLKEDVGY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 ++V +ID + A NALLK+LEEPP +V FIL + +TI SRC Sbjct: 114 APLNSRYKVFIIDEAHMLTMQAFNALLKTLEEPPARVTFILATTEPHKFPATIISRCQHF 173 Query: 185 KFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F L++ L L++ + + GSV ++ +L Sbjct: 174 LFKRLAQPELEAHLGGLLDREAVPFESKAVSLIARRGAGSVRDSMSLLAQVLALGGAALT 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 + ++ + Q+ + + + + D + L + + K + L+G Sbjct: 234 EADARSVLGLAGQDVFFG----LIEAIHAMDGPAVVELLRQVLDKGLDIGFFLRELAGM 288 >gi|256786465|ref|ZP_05524896.1| DNA polymerase III subunits gamma and tau [Streptomyces lividans TK24] Length = 734 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 128/350 (36%), Gaps = 38/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGECQS--CRDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L + I + V A GSV ++ +L Sbjct: 173 HHYPFRLVPPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF---DFLIEF------ILKEICK 284 ++ + + + +L + + + +S D AF D +IE + ++ + Sbjct: 233 DGVTYDMTTSLLGYTDGSL--LDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLE 290 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + +A D A + + ++ +F L R I + Sbjct: 291 RLRDLVILAAVPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVN 340 >gi|284028399|ref|YP_003378330.1| DNA polymerase III subunits gamma and tau [Kribbella flavida DSM 17836] gi|283807692|gb|ADB29531.1| DNA polymerase III, subunits gamma and tau [Kribbella flavida DSM 17836] Length = 1113 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 121/351 (34%), Gaps = 44/351 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L + R++HA LF G +G GK T A + Sbjct: 17 LYRRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAYLFSGPRGCGKTTSARILARAINCE 76 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P +C C+ + D + + + + VD+ R +R Sbjct: 77 KGPIAQPCGVCKS--CTDLAR--GGPGSIDVIEIDAASHG---------GVDDARDLRER 123 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP + FI + ++ TIRSR Sbjct: 124 AFFAPVESRYKIYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSRT 183 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + + + E + + V A GSV ++ Sbjct: 184 HHYPFRLVPPKVLGDYMATLCEAEGVAIAPAALPLVVRAGAGSVRDSLSVLDQLIGGAGP 243 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQD-QKIAFDFLI 275 +L + D ++ + +D + ++++ + QD ++ A D L Sbjct: 244 EGVTYELAVALLGFTPDSLLDACVDGFAAHDSRAVFETVEKVIET--GQDPKRFAEDLLR 301 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 I + A SG +E A+ + L + L R I Sbjct: 302 RLRDLVILSAVPNAVASGLIEAAEDQGE---RLQTQAAGIGPAELTRAADI 349 >gi|89900250|ref|YP_522721.1| DNA polymerase III subunits gamma and tau [Rhodoferax ferrireducens T118] gi|89344987|gb|ABD69190.1| DNA polymerase III, subunits gamma and tau [Rhodoferax ferrireducens T118] Length = 647 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 66/366 (18%), Positives = 141/366 (38%), Gaps = 34/366 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L+ + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFTEMVGQDHVVQALTNALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA------CIDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + +A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QALLEQAVYKPVQGRFKVFMIDEVHMLTGHAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY- 230 T+ SRCL ++ + + L+ K+ + AA+GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPIAPETIREHLQTVLQAEKVAADVPSLRLLARAAHGSMRDALSLADQA 229 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI-----LKE 281 ++ ++ + Y + ++ +A + + + + L+E Sbjct: 230 ISFGAGQIEEATVRQMLGSVDRSYVFRLLEALAQGDGKTVVETSEALRLNGLSAASTLEE 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYF 341 + + A+ + A + + + ++ D Q+++ + R L Sbjct: 290 MSMVLQRMAVVQAVPSAVESDETDPQALDVARLAALMPADETQLLYSICLHGRAELGLAP 349 Query: 342 RDFYAI 347 ++ A+ Sbjct: 350 DEYAAL 355 >gi|21222469|ref|NP_628248.1| DNA polymerase III subunits gamma and tau [Streptomyces coelicolor A3(2)] gi|5918469|emb|CAB56347.1| DNA polymerase III subunit gamma [Streptomyces coelicolor A3(2)] Length = 784 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 128/350 (36%), Gaps = 38/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 QGPTPTPCGECQS--CRDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID ++ NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L + I + V A GSV ++ +L Sbjct: 173 HHYPFRLVPPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF---DFLIEF------ILKEICK 284 ++ + + + +L + + + +S D AF D +IE + ++ + Sbjct: 233 DGVTYDMTTSLLGYTDGSL--LDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLE 290 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + +A D A + + ++ +F L R I + Sbjct: 291 RLRDLVILAAVPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVN 340 >gi|313202632|ref|YP_004041289.1| DNA polymerase iii, tau subunit [Paludibacter propionicigenes WB4] gi|312441948|gb|ADQ78304.1| DNA polymerase III, tau subunit [Paludibacter propionicigenes WB4] Length = 584 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 117/307 (38%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + L S + HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPSTFNSVVGQSSLTVTLKNAIKSNHLAHAYLFCGPRGVGKTTCARIFAKTINC 65 Query: 61 NPDFSK-APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 S C + C F +Q + + L + N VD+IR + Sbjct: 66 QNLTSDFEACNEC--ESCVSFNEQRSYNIH----ELDAASNN---------GVDDIRSLT 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G + V +ID V +++ A NA LK+LEEPP +FIL + I+ TI S Sbjct: 111 DQVRIPPQIGKYSVYIIDEVHMLSQGAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN ++ + K L E+ + + + V + G + A+ I Sbjct: 171 RCQIYDFNRITVADTVKHLQMVAEKEGVTVDVNGLNVVAQKSDGGMRDALSIFDQLVSFC 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + I+ +++ EY ++ + L D + E + K Sbjct: 231 GNNITYQGVIENLNVLDYEYYF----KLVEAFLKGDVSQSLLLFNEVLNKGFDAHHFITG 286 Query: 291 LSGQLEE 297 LS L + Sbjct: 287 LSSHLRD 293 >gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides ATCC 17029] gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides ATCC 17029] Length = 580 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T A + Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + +A D + + + V +IR Sbjct: 71 VGPDGTGGPT----TEPCGQCEPCRAIAEGRHVDVMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L + + AA GSV A+ ++ D Sbjct: 178 LSRCQRFDLKRIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ Q+ L D+ D + ++K +A A Sbjct: 234 QAIAHGAGETT----------ADQVRAMLGLADRGRVLDLF-DLVMKGEAAAALAELSGQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YADGADPMA-VLRDLAEITH 301 >gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense DSM 12168] Length = 672 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 120/288 (41%), Gaps = 28/288 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P L G E + L SG++ HA LF G +G GK + A + Sbjct: 5 VTATRRRPQRFDDLVGQEFVAATLKNAIQSGKIAHAYLFAGPRGCGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C +++ + D + + + N +V+++R+I+ Sbjct: 65 EKGPAAVPCGEC------AACREITRGSSLDVIEIDGASNT---------SVNDVRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N+ +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SR Sbjct: 110 EVLFPPNSCRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F ++ + + L Q +++ D ++ + GS+ A + D++ Sbjct: 170 CQQFHFRLVAVEQIKELLAQAAAEIQVQADDEALYWIARESTGSIRDAYTLF----DQVS 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 S D I + ++ + + ++ D A + L E + Sbjct: 226 SFSDGHITFDKIREKLGLVGVDRLNGLCEICVAADASAAIERLDEILQ 273 >gi|298528795|ref|ZP_07016199.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira thiodismutans ASO3-1] gi|298512447|gb|EFI36349.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira thiodismutans ASO3-1] Length = 561 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 142/328 (43%), Gaps = 32/328 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P ++ G + I+ LS+ R HA LF G +G+GK TL + + Sbjct: 9 RYRPQNFAQVAGQDFIKSILSRAAGQDRPSHAYLFSGTRGVGKTTLARILSKAINCYNGP 68 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P C+ +Q+ A D + + + VD +R++R ++ Sbjct: 69 APEPCNQCSS------CEQITRGASPDVWEIDAASHT---------GVDNVRKLREDVAY 113 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +G ++V++ID ++ +A NALLK+LEEPP +FI+ + A +T+ SRC Sbjct: 114 SPMSGRYKVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRCQHY 173 Query: 185 KFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F L+ L+ L+ + + GSV ++ +L D Sbjct: 174 VFKRLTHGELFAHLCFVLDTEGVSYEKEAVHLLTRRGSGSVRDSMSMLGQVLALGDEGLK 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE------FILKEICKSAKAA 289 + ++ + QE L+ MQ I D+ L + ++ ++L+E F L+E+ + + Sbjct: 234 TADVRRVLGLADQELFLRLMQHILDQDLVRLHEMV-NYLLEQGLDLGFFLQEMAQCWRNM 292 Query: 290 A-LSGQLEEADQIAQIYFSLVKRVHAFS 316 LS +EA ++ + V++ + Sbjct: 293 FLLSQGGQEAGKVLDLPAEEVEKWREMA 320 >gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC 51142] gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC 51142] Length = 683 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 21/226 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD- 63 + P L G E I LS S R+ A LF G +G GK + A + Sbjct: 10 KYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVK 69 Query: 64 -FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + +P C + +A + D + + + N VD IR I Sbjct: 70 VPTASPCGQC------EVCRAIARGSALDVIEIDAASNT---------GVDNIREIIERS 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 115 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQ 174 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 + + + + L ++ I V A G + A Sbjct: 175 RFDYRRIPLEAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDA 220 >gi|258545555|ref|ZP_05705789.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] gi|258519255|gb|EEV88114.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] Length = 636 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 24/286 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ R+HHA LF G +G+GK T+ +A + Sbjct: 4 VLARKWRPKNFHELVGQTHVTQALTYALDHNRIHHAYLFTGTRGVGKTTIARIFAKSLNC 63 Query: 61 NPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + S P C+ K++ D + + + V+E R + Sbjct: 64 QKNHVSSNPCGECDH------CKEIDQGRFPDLIEVDAASRS---------RVEETRELL 108 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V + ++ NALLK+LEEPP V FIL + + +TI S Sbjct: 109 DNVPYAPVKGQYKVYLIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILS 168 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILH----YD 231 RCL ++SE + + L + + AA GS+ ++ +L Y Sbjct: 169 RCLQFHLKNMSERQISEHLAHILQAEHAEYEPDALHLLANAAAGSMRDSLSLLDQALAYG 228 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + + + + E L M Q+ + + + L E+ Sbjct: 229 RGHVRTRDVATLLGAVPEPQLLHMLQLLANGDAPGLRNTLESLDEY 274 >gi|114568986|ref|YP_755666.1| DNA polymerase III subunits gamma and tau [Maricaulis maris MCS10] gi|114339448|gb|ABI64728.1| DNA polymerase III, tau subunit [Maricaulis maris MCS10] Length = 606 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 124/321 (38%), Gaps = 30/321 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 34 VLARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARALNF 93 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D AP + A D + + + V +IR I Sbjct: 94 QTDGIDAPSMALGEK--GRHCDAIGRSAHVDVMEMDAASRT---------GVGDIREILE 142 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ +A NALLK+LEEPP+ FI + + T+ SR Sbjct: 143 GVRYAPVSARYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSR 202 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L+++ + AA GSV A+ +L D+ I Sbjct: 203 CQRFDLKRIDREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLL----DQAI 258 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 D P ++ M +AD D L + + K+A A A L Sbjct: 259 VQGSDEDG-PVSAPQIRDMLGLADH------ARVLDLLEQTLT---GKTADALAELSSLH 308 Query: 297 EA-DQIAQIYFSLVKRVHAFS 316 +A I L+ VHA + Sbjct: 309 DAGGDPVVITRDLLDYVHATA 329 >gi|260912516|ref|ZP_05919050.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] gi|260633365|gb|EEX51521.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral taxon 472 str. F0295] Length = 608 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + C + ++ L + N +V+ I+ + Sbjct: 66 LTPTETGEACNHCES------CQAFNDQRSYNIFELDAASNN---------SVENIKTLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ + L E + + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPGIIDHLKRVAENEGVAYEEEALAVIAEKADGGMRDALSIFDQAA 227 >gi|209965591|ref|YP_002298506.1| DNA polymerase III subunits gamma and tau [Rhodospirillum centenum SW] gi|209959057|gb|ACI99693.1| DNA polymerase III, subunits gamma and tau, putative [Rhodospirillum centenum SW] Length = 640 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 115/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L SGR+H A + G +G+GK T A + Sbjct: 25 VLARKYRPQSFDELVGQDALVRTLRNAIQSGRIHQAYMLTGVRGVGKTTTARIIARALNC 84 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P P + +A+ D L + + N VD IR I Sbjct: 85 VGPDGKGGP--TITPCGVCEQCRSIAADRNVDVLEMDAASNT---------GVDNIREII 133 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID V +++ A NALLK+LEEPP V F+ + + T+ S Sbjct: 134 DGVRYAPAAARYKLYIIDEVHMLSKGAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLS 193 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L ++ + + AA GSV + +L D+ Sbjct: 194 RCQRFDLRRVDQGTLVGHFTRIAGKEGVEADAEAISLIARAADGSVRDGLSLL----DQA 249 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + +Q+ D L D+ + D + + L G Sbjct: 250 IALGSGRVT----------AEQVRDMLGLADRGLIVDLFEAAMAARPADAL--GVLDGLH 297 Query: 296 EEADQIAQIYFSLVKRVH 313 I L+ H Sbjct: 298 RRGADPVVIVQDLLDFTH 315 >gi|159900437|ref|YP_001546684.1| DNA polymerase III subunits gamma and tau [Herpetosiphon aurantiacus ATCC 23779] gi|159893476|gb|ABX06556.1| DNA polymerase III, subunits gamma and tau [Herpetosiphon aurantiacus ATCC 23779] Length = 575 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 105/274 (38%), Gaps = 31/274 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G I + L + R+ HA LF G +G+GK + + V Sbjct: 6 LYRKWRSQTFDDLVGQSHIVQALRNAIAANRIGHAYLFTGPRGVGKTSAARILSKAVNCE 65 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P C + +A D + + + + +VD+ R I Sbjct: 66 QSDPRLRPCGEC------STCRAIAEGRAVDVIEMDAASHT---------SVDDAREIIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V +ID V ++ A NALLK+LEEPP +FIL + + +TI SR Sbjct: 111 KVQFRPTQFRKKVYVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C FN + N LE + + + V AA GS+ A+ IL Sbjct: 171 CQRFVFNRHTIANTIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSILD------- 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 L+ + L ++Q + S++ + Sbjct: 224 ----QLMGYGEPQIPLTRVQSLLGATASREVETL 253 >gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] Length = 569 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 138/352 (39%), Gaps = 53/352 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L ++ HA LF G +G GK ++ +A V N Sbjct: 5 LYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEVNGN 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ D + + + N VDE+R I+ Sbjct: 65 ---------------------EIYQKENVDIIEIDAASNN---------GVDEVRDIKEA 94 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 95 IKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRC 154 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +LS+ L L ++ ++ ++ + + A G + AI IL +S Sbjct: 155 QRFEFKNLSQEQLIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQ-----VS 209 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + I + I + S + +F + ++ KS + + + Sbjct: 210 NYAEEITLNH----------ILEVTSSISEDDILEFYRGLLQGDVTKSLLKY--NEFVAQ 257 Query: 298 ADQIAQIYFSLVKRVHAFSMY-NL-DRRQMIFHLLSKARECNDLYFRDFYAI 347 A + L+ +Y NL D + +++ E + + F FY I Sbjct: 258 AKDTKLLLNDLINVTRDIVVYKNLKDTKHTAYNVEKIVTEIDSVSFDYFYKI 309 >gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CB0101] Length = 622 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 112/300 (37%), Gaps = 21/300 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L SGR+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCISGD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGTC------ELCTSIANGNALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L + L EQ +I V A G + A +L Sbjct: 176 RFDFRRIPLDALERHLGWIAEQEQISITAEALHVVAQRAQGGLRDAESLLDQLSLLPPPV 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + Q++ Q+A+ L + + + + + + SA L+G L + Sbjct: 236 EPQAVWELLGAVPEQELLQLAESLAAGEPLGLIEAIRTLLERGREPSAVLQGLAGLLRDL 295 >gi|33241267|ref|NP_876209.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 559 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 113/299 (37%), Gaps = 33/299 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + + P L G + I L Q S R+ A LF G +G GK + A + Sbjct: 8 LHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARSLNCQ 67 Query: 62 P--DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + AP CN K++ D + + + N VD IR + Sbjct: 68 QSEKPTIAPCCQCN------LCKEIGKGTALDIIEIDAASNT---------GVDNIRELI 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 W+V +ID ++ A NALLK+LEEPP + +F+L + +L TI S Sbjct: 113 ERSQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILS 172 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F + +L L + KI + + + G + A +L Sbjct: 173 RCQRFDFRRIPITSLTSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLL------- 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 D + + + LQ + ++ E+ D I LI + K+ + +G+ Sbjct: 226 -----DQLSLLKPPINLQSIWELLGEVPENDLIILTSSLISQDPISLLKTCRKLFDNGK 279 >gi|149924601|ref|ZP_01912956.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] gi|149814526|gb|EDM74111.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] Length = 747 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 130/339 (38%), Gaps = 34/339 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L S R+HHA LF G +G+GK T A ++ Sbjct: 6 LARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTTAARILAKCLVCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + D + + + N +VD+IR +R Sbjct: 66 HGPTPEPCNQC------VHCVGINEGRSVDVIEIDGASNN---------SVDDIRSLRDQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++ +ID V + + A NALLK+LEEPP V F+ + +L TI SR Sbjct: 111 VHYLPQIARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRV 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + + + L LEQ + GSV ++ +L DK+I+ Sbjct: 171 SRLDYRRVRAATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLL----DKVIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D I +E +L Q + A L++ IL S Sbjct: 227 FAHDPKAITGEEVL---------TVLGQASRYAVAELVQAILDRDAASVLQRFEQITSSG 277 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLDR-RQMIFHLLSKARE 335 +D + Q+ ++++ + ++ +L + R + + E Sbjct: 278 SD-LMQLAVAILQHLRDLTVLSLTKSRAALLDMNDDLFE 315 >gi|319403646|emb|CBI77231.1| DNA polymerase III subunit tau [Bartonella rochalimae ATCC BAA-1498] Length = 630 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 20/268 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E I L+ + +GR+ A + G +G+GK T A + Sbjct: 16 VLARKYRPQNFSDLIGQEAIVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 76 KTKDIDQPTTL--FDTLGEHCAQIIEGRHIDVIEMDAASHT---------GIDDIREIIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +++ +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 125 QIRYRPVSARYKIYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDC 232 C + L L + K+ D + AA GSV A+ I + Y Sbjct: 185 CQRFNLQRIETTVLVTHLRKVAQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAYGN 244 Query: 233 DKIISSYIDL-IHIPRQEYALQKMQQIA 259 K+ ++ + L + + Q + + + Sbjct: 245 GKVDATAVSLMLGLTDQSRIIDLFESLM 272 >gi|22536992|ref|NP_687843.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae 2603V/R] gi|25010901|ref|NP_735296.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae NEM316] gi|76787118|ref|YP_329574.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae A909] gi|76798944|ref|ZP_00781147.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21] gi|77405538|ref|ZP_00782629.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae H36B] gi|77410726|ref|ZP_00787085.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae CJB111] gi|77413110|ref|ZP_00789310.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 515] gi|22533847|gb|AAM99715.1|AE014229_16 DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 2603V/R] gi|23095280|emb|CAD46490.1| Unknown [Streptococcus agalactiae NEM316] gi|76562175|gb|ABA44759.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae A909] gi|76585711|gb|EAO62266.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21] gi|77160811|gb|EAO71922.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae 515] gi|77163262|gb|EAO74214.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae CJB111] gi|77175845|gb|EAO78623.1| DNA polymerase III, gamma and tau subunits [Streptococcus agalactiae H36B] Length = 554 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 21/284 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQINGEPCNHCD------ICRDITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ ++L + L++ I V A G + A+ IL Sbjct: 170 QRFEFKAIKLLAIRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKD 229 Query: 238 SYI--DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 ++I D+ +L + +L+ D A L Sbjct: 230 NHISLDVAEEITGSISLSAIDDYVSNILAHDTTEALAKLEVIFD 273 >gi|328906727|gb|EGG26499.1| DNA polymerase III, subunit gamma and tau [Propionibacterium sp. P08] Length = 968 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 124/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + + Sbjct: 120 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCD 179 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 180 QGPTLTPCGKCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 226 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 227 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 286 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L + I + V A GSV ++ +L D+++ Sbjct: 287 HHYPFRLVPPKVLVEYLAGLCSKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 342 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAF---DFLIEF------ILKEI 282 D Q AL + +I D + D F D +IE +++ Sbjct: 343 GAADGHVSYEQAAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDL 402 Query: 283 CKSAKAAALSGQLEEADQIA------QIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A + + L +V F L R + Sbjct: 403 LRRMRDLVILSAVPDACRTGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 453 >gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45] gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45] Length = 588 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 116/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + +GR+ A + G +G GK T A + Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P P K + D + + + N V +IR I Sbjct: 70 IGPDGEGGPTTE--PCGVCEHCKAIMEGRHVDVMEMDAASNT---------GVGDIREII 118 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 119 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 178 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L ++ D + AA GS A +L D+ Sbjct: 179 RCQRFDLRRIEPEVMIALLRKIASSESAEITDDALALITRAAEGSARDATSLL----DQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS +Q+ L D+ D E I++ A Sbjct: 235 ISHGAGETT----------AEQVRAMLGLADRGRVMDLF-EKIMRGDAPGALTELSEQYA 283 Query: 296 EEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 284 DGADPLA-VLRDLAELTH 300 >gi|220911471|ref|YP_002486780.1| DNA polymerase III subunits gamma/tau [Arthrobacter chlorophenolicus A6] gi|219858349|gb|ACL38691.1| DNA polymerase III, subunits gamma and tau [Arthrobacter chlorophenolicus A6] Length = 1202 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 120/354 (33%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L R++HA LF G +G GK T A + Sbjct: 7 LYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C C + D + + + + VD+ R +R Sbjct: 67 EGPTDTPCGVC--PSCVELAR--GGSGSLDVIEIDAASHG---------GVDDARDLRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 114 ATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L LE Q + V A GSV ++ Sbjct: 174 HHYPFRLVPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGP 233 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L Y ++ ++ + + + ++ D + + L+E Sbjct: 234 NGLDYELAVALLGYTHASLLDDVVEAVAASDAATVFRAVDRVIQT--GHDPRRFVEDLLE 291 Query: 277 FILKEICKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I A + L ADQIA+ L + H L R + + Sbjct: 292 RFRDLIIVQAMPESAQVILRGMPADQIAR----LQNQAHNLGAAELSRAADVTN 341 >gi|29840095|ref|NP_829201.1| DNA polymerase III subunits gamma and tau [Chlamydophila caviae GPIC] gi|29834443|gb|AAP05079.1| DNA polymerase III, gamma subunit [Chlamydophila caviae GPIC] Length = 446 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 109/281 (38%), Gaps = 29/281 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + L R+ HA LF G +G GK TL +A + Sbjct: 8 VSSRKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKALNC 67 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C K+++S D + + + + +++IR+I Sbjct: 68 PERTSDHEPCNHC------CICKEISSGTSLDVIEIDGASHR---------GIEDIRQIN 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI S Sbjct: 113 ETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + E + + L + I + AA GS+ A + Y Sbjct: 173 RCQKMYLKRIPETMIVEKLASISKENSIETSSEALLPIARAAQGSLRDAESLYDYVTGLF 232 Query: 236 -----ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF 271 S D + + Q+ + +A+ + +Q A Sbjct: 233 PKSLSPESVADALGLLSQD----TLYTLAECIRTQKYAEAL 269 >gi|239930314|ref|ZP_04687267.1| DNA polymerase III subunits gamma and tau [Streptomyces ghanaensis ATCC 14672] Length = 430 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 120/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 6 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 66 EGPTPTPCGTCQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 113 AFFGPAQSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 172 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L L + I + V A GSV Sbjct: 173 HHYPFRLVPPGTLRDYLGEVCAKEDIPVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA 232 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 233 EGVTYAMATSLLGYTDGSLLDSVVEAFATGDGAAAFEVVDRVIEG-GNDPRRFVADLLER 291 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + ++ + F L R + + Sbjct: 292 LRDLVILAAVPDAAEKGLI---DAPADVIERMLAQAGTFGAAELSRAADLVN 340 >gi|254500518|ref|ZP_05112669.1| hypothetical protein SADFL11_554 [Labrenzia alexandrii DFL-11] gi|222436589|gb|EEE43268.1| hypothetical protein SADFL11_554 [Labrenzia alexandrii DFL-11] Length = 355 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 100/333 (30%), Positives = 157/333 (47%), Gaps = 7/333 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD---F 64 P L GH + E L Y S R+HHA + G +GIGKATL FR+A VL +PD Sbjct: 22 PHQRNVLIGHGETETSLLDAYRSERLHHAWILGGPKGIGKATLAFRFAKFVLAHPDRFGP 81 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 A + + P V+Q+A+ + L+L + K +++T + VDE+RR F Sbjct: 82 QAAMAQDLSVPEDHPVVRQVAAGGHPNILHLRRPWDDKGKRFKTDLPVDEVRRTVSFFGT 141 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA+ WRV ++D D MN ++ANALLK LEEPP++ LF+++SHA +L TIRSRC + Sbjct: 142 TASARAWRVCIVDAADDMNASSANALLKILEEPPERCLFLVLSHAPGRLLPTIRSRCRRL 201 Query: 185 KFNSLSENNLYKALEQLKIMGWDSKRDF--VKIAAYGSVARAIKILHYDCDKIISSYIDL 242 LSE ++ L L + A GS+ A+ +L D I L Sbjct: 202 DLAPLSETDIANGLRDLAGHAIPDASGLSEIARTADGSLRAALTLLAGDGLAITQGTRKL 261 Query: 243 IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 Q L+ + ++D + ++ Q ++ + +++ A Sbjct: 262 AEAGSQ-MDLKALHALSDLVAARGQTDNWESFQHVAETWLH-GQMRGSIAAGTGAAYAYV 319 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 +++ K + NLDR+Q++ K R Sbjct: 320 KLWEGTRKAIAESDALNLDRKQVVLDFFLKLRS 352 >gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302] gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302] Length = 599 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 66 EHPGEDGEACNACES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N + L + I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVGNTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAA 227 >gi|297624591|ref|YP_003706025.1| DNA polymerase III subunits gamma and tau [Truepera radiovictrix DSM 17093] gi|297165771|gb|ADI15482.1| DNA polymerase III, subunits gamma and tau [Truepera radiovictrix DSM 17093] Length = 522 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 119/300 (39%), Gaps = 29/300 (9%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P+ ++ G E ++ L GR+ HA LF G +G+GK T A V + Sbjct: 9 RPITFAQVVGQEHVKAPLQAALAKGRVGHAYLFSGPRGVGKTTTARLLAMAVNC--EGED 66 Query: 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA 126 P C + A D L + N +V++IR +R + L + Sbjct: 67 RPCGACES------CLLVRRGAHPDVTELDAASNN---------SVEDIRDLREKVRLAS 111 Query: 127 NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 G RV ++D ++++A+NALLK+LEEPP+ ++FIL + + TI SR +F Sbjct: 112 LRGGRRVWVLDEAHMLSKSASNALLKTLEEPPEGLVFILATTEPEKLPPTILSRTQHFRF 171 Query: 187 NSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCDKIISS 238 LSE + L L + + V AA G++ A +L + Sbjct: 172 RRLSEAEIASKLRALCHEAGVSAEEGALALVARAADGAMRDAESLLERLLTTGAPITLQD 231 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + +P Q ++Q +A L + D F A L+ +L A Sbjct: 232 AEGALGLPPQA----RLQALARHLAAGDLASLFAEASALYRDGFAPRTLAERLAAELRGA 287 >gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] Length = 664 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 101/282 (35%), Gaps = 21/282 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD- 63 + P L G E I + LS R+ A LF G +G GK + A + Sbjct: 9 KYRPQTFADLVGQEAIAQTLSNAIRQDRIAPAYLFTGPRGTGKTSSARILAKSLNCLAGN 68 Query: 64 -FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C+ + + D + + + N VD IR + Sbjct: 69 VPTATPCGKCD------VCQGIVEGRTLDVIEIDAASNT---------GVDSIRDLIERA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ +A N+LLK+LEEPP +V+F+L + + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L ++ I V A G + A +L Sbjct: 174 RFDFRRIPVVAMTNHLREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAGEV 233 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 ++ + + + + + S + D + + + Sbjct: 234 TVEKVWDLVGAVPENDLMALLEAIASDTTETVIDCVRHLMDR 275 >gi|308190298|ref|YP_003923229.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|307625040|gb|ADN69345.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] Length = 604 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 22/235 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A V Sbjct: 6 LYRKYRPKSFDDVKGQDHIVQTLKNIILNHKISHAYLFSGPRGVGKTSVAKIFANVVNCG 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + C +++ + D + + + N V+EIR +R Sbjct: 66 HGEDLTKL-------CESCIEKADQN--FDVIEMDAASNN---------GVNEIRDLRDK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +G ++V +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 108 IQHSPASGNYKVYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRV 167 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 F +S N + + L++ KI DS ++ A G + A+ I+ Sbjct: 168 QRYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSIVDQAA 222 >gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4] gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4] Length = 747 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 123/353 (34%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C P + S L D L + + VD+ R +R Sbjct: 63 EGPTSTPCGSC---PSCVALGPGGSGNL-DVTELDAASHG---------GVDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F L+ + K +Q + D V A GS ++ IL D Sbjct: 170 HHYPFRLLAPTTMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGD 229 Query: 234 K-----------------IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + +I +D + + ++ D ++ A D L Sbjct: 230 EGVTYPRALALLGVTDVALIDDAVDALATGDGAALFGTVDRVMDA-GHDPRRFAVDLLER 288 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + ++ AA G D + + +V L R + H Sbjct: 289 LRDLILMQAVPDAAERG---LVDAPGDVLEHMRAQVQRIGPATLTRYAEVMHA 338 >gi|238783570|ref|ZP_04627591.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970] gi|238715448|gb|EEQ07439.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970] Length = 656 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 127/334 (38%), Gaps = 35/334 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L+ GR+HHA LF G +G+GK ++ A + Sbjct: 6 LARKWRPQTFADVVGQQHVLTALANSLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C ++ D + + + K V++ R + Sbjct: 66 TGITATPCGICAN------CLEIEQGRFVDLIEIDAASRTK---------VEDTRELLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G ++V +ID V ++R++ NALLK+LEEPP V F+L + + TI SRC Sbjct: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI-----LHYDC 232 L + + LE++ +I + AA GS+ A+ + D Sbjct: 171 LQFHLKVIDVEVIRALLEKILQVEQISSDARALQLLARAADGSMRDALSLTDQAIAMGDG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQ---------DQKIAFDFLIEFILKEIC 283 ++ ++ E L ++ + ++ + + ++ L+ L + Sbjct: 231 SITTATVSQMLGTLDDEQPLAIIEALVSADGARVMAQVEQGASRGVDWENLLVETLSLLH 290 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + A L L+ A I L + Sbjct: 291 RIAMVQLLPSMLDN--HYATIEPRLRELARTLPP 322 >gi|302668629|ref|YP_003833077.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio proteoclasticus B316] gi|302397593|gb|ADL36495.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio proteoclasticus B316] Length = 401 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 22/236 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + G + I L + HA LF G +G GK TL +A + Sbjct: 6 LYRKFRPQSFDEVQGQDYIVTALRNQVKHDMVSHAYLFHGTRGTGKTTLARIFARAINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ F K AS + + + + + N K V ++RRI Sbjct: 66 NTINGNPCGECD------FCKSYASGSDANIIEIDAASNSK---------VVDVRRIIAE 110 Query: 122 LSLTANTGYWRVIMIDPVDGM---NRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 +S G W+V +ID V + A + LLK+LEEPP +FIL + + +TI Sbjct: 111 VSYPPMKGKWKVYIIDEVHMLYGKRGEAFDILLKTLEEPPPYAVFILATTEMNKVPATIL 170 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 SRC F +S + + + L E +I ++ ++ A GS+ A+ IL + Sbjct: 171 SRCQQYAFRRISIDIIEQHLRMVTEAERIPAEETALQYIAKVADGSMRDALSILEH 226 >gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 626 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 80 YKTSDVDKPTIDLRTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFSTIAAKEGIEAEPDALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + Q A++ M +A D+ D + ++ A Q Sbjct: 245 IAHGAGAV----QAEAVRGMLGLA------DRARIVDLFQHVVKGDVA--AALGEFQSQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLTDLADFTH 310 >gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] Length = 594 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 117/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + L + + R+ HA + G +G GK T A + Sbjct: 14 VLARKYRPETFSDMVGQDAMVRTLKNAFEADRIAHAFVMTGIRGTGKTTTARIIAKGMNC 73 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 74 VGVDGTGGPTTEPCGQC------EHCLSIIQGRHVDVMEMDAASRT---------GVGDI 118 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + +A + +++ +ID V ++ +A NALLK+LEEPP V FI + I Sbjct: 119 REIIDSVHYSAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKIPV 178 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + +++ + L+++ + + + GS AI +L Sbjct: 179 TVLSRCQRFDLRRIEPDDMMELLKKIAESEEAKISQDALALITRGSEGSARDAISLL--- 235 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ Q+ L D+ D + I++ A Sbjct: 236 -DQAIAHGAGE----------TNADQVRAMLGLADRGRVLDLF-DMIMRGQADKALEELS 283 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + AD +A I L + H Sbjct: 284 GQYADGADPLA-ILRDLAEITH 304 >gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413] gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413] Length = 650 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 116/326 (35%), Gaps = 39/326 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I L+ + ++ A LF G +G GK + A + + Sbjct: 9 KYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 KPTAEPCGVCD------VCQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + K L + I V + G + A +L Sbjct: 174 RFDFRRIQLEAMVKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLL---------- 223 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI----EFILKEICKSAKAAALSGQ 294 D + + E +++ + + QD + + E +L + Sbjct: 224 --DQLALLPNEVTPEQVWDLVGSVSEQDLLVLLAAIAQDNPELVLDSTRQILDRGREP-- 279 Query: 295 LEEADQIAQIYFSLVKRVHAFSMYNL 320 L +A Y L+ A + +NL Sbjct: 280 LTILQNLAAFYRDLLIAKTAPNRHNL 305 >gi|83313202|ref|YP_423466.1| DNA polymerase III subunits gamma and tau [Magnetospirillum magneticum AMB-1] gi|82948043|dbj|BAE52907.1| DNA polymerase III, gamma/tau subunits [Magnetospirillum magneticum AMB-1] Length = 599 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 122/325 (37%), Gaps = 46/325 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS +GR+ HA + G +G+GK T A + Sbjct: 15 VLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTARIIARALNC 74 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + +A D L + + V++I Sbjct: 75 VGLDGKGGPTIDPCGQC------EHCRAIAEDRHVDILEMDAASRT---------GVNDI 119 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + +++ +ID V ++ A NALLK+LEEPP+ V F+ + I Sbjct: 120 REIIEGVRYRPTSARFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPV 179 Query: 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + L K E + + + + AA GSV + +L Sbjct: 180 TVLSRCQRFDLRRVEMEVLAKHFESIAAKEQAEIEPAALKLIARAADGSVRDGLSLL--- 236 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS + Q+ D L D+ FD L I K AAL Sbjct: 237 -DQAISHGAGAVTEA----------QVRDMLGLADRARVFDLL-----DAIMKGQVPAAL 280 Query: 292 SGQLEEADQIAQ---IYFSLVKRVH 313 ++ A + +++ VH Sbjct: 281 DQITDQYAAGADPVVVLQDMLELVH 305 >gi|125625234|ref|YP_001033717.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris MG1363] gi|124494042|emb|CAL99042.1| DNA polymerase III subunits gamma / tau [Lactococcus lactis subsp. cremoris MG1363] gi|300072044|gb|ADJ61444.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris NZ9000] Length = 553 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +L D + L + N VDEIR IR Sbjct: 66 NQVDGEPCNNCF------ICDSITKGSLDDVIELDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR Sbjct: 111 STYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F S++ ++ L ++ + D D + AA G + A+ +L Sbjct: 171 QRFAFKSITTADIRTYLGKILGDEGVEFEDKALDVIAKAAEGGMRDALSLLDQA 224 >gi|85715532|ref|ZP_01046513.1| DNA polymerase III subunit delta [Nitrobacter sp. Nb-311A] gi|85697727|gb|EAQ35603.1| DNA polymerase III subunit delta [Nitrobacter sp. Nb-311A] Length = 346 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 168/337 (49%), Gaps = 9/337 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P LFGH + E+ L Y GR+ HA L G GIGKATL +R A VL + D + Sbjct: 14 HPRETAVLFGHGEAERTLLDAYRGGRIPHAWLIGGAPGIGKATLAYRMARFVLAHGDPAM 73 Query: 67 APVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 + V+ D P + +A+ L L + N K G RTVI+V++IR F Sbjct: 74 SDVQSAETLKLDLAHPVARGVAAGTHGGLLTLERTPNEK-GIMRTVISVEQIRETISFFG 132 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N NAANALLK LEEPP + LF L+SHA +L+T++SRC Sbjct: 133 STATGNGWRVCIVDTVDELNPNAANALLKVLEEPPHRSLFFLVSHAPVRVLATMQSRCRK 192 Query: 184 IKFNSLSENN-LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L+ ++ + A + I D+ V AA GSVARA+ +L K+ + L Sbjct: 193 LMLRPLAASDVIRAAAAAVGIAPDDASLQEVAGAAEGSVARALALLGGGALKLHQRTMAL 252 Query: 243 IH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 ++ +P+ + ++ + D + D+ A I+ + + I + + ++ L ++ Sbjct: 253 LNRLPQVDP--GELHALGDAISGSDRA-ALSAFIDSVDRWIGERLRTGDVNADLPRLARL 309 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A+++ + YNL+R+ ++F E Sbjct: 310 AEVWEKINTAARETETYNLERKPLVFSAFGLLAEATR 346 >gi|296876245|ref|ZP_06900298.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 15912] gi|296432750|gb|EFH18544.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus parasanguinis ATCC 15912] Length = 558 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 126/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNDCY------ICESITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LE + I + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKLPDIVHHLESILATEGIAYEADAVQIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + IA+E+ A D + IL +A L+ + Sbjct: 226 LTAGS----------ELTTAIAEEITGSISLAALDQYVAAILDHDATAALDQ-LAIIFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ + Sbjct: 275 GKNMARFVADLLQYLRDL 292 >gi|315635707|ref|ZP_07890970.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri JV22] gi|315480004|gb|EFU70674.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri JV22] Length = 644 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 139/353 (39%), Gaps = 25/353 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G I + LS S R+ HA LF G +G GK + A +L Sbjct: 10 VLALKYRPKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C+ K + D + + + N +D+I+ + Sbjct: 70 SQGPTSKPCDICDN------CKSANASKHLDIIEMDAASNR---------GIDDIKDLIE 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++V +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 115 HTKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSR 174 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 +FN ++++++ L + I + + + + GS+ + +L Sbjct: 175 TQHFRFNKIAQSDVVHHLSYILNKENIDFEQNALEILARSGQGSLRDTLTLLDQAIIFSK 234 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-ELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 +S +D++ + + I + E +++ K + + I E+ K Sbjct: 235 GKVNTTSVVDMLGLIDPKMMDNIFSMILNKEDITKLVKELEVYEVSQICDEMTIYLKDKM 294 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 LS + + +F ++ N D ++ K E +L D Sbjct: 295 LSRDNKFDLLLFDRFFRILSDAKQLLAINSDGTFVLILTFMKMIEATNLRTID 347 >gi|54022248|ref|YP_116490.1| DNA polymerase III subunits gamma and tau [Nocardia farcinica IFM 10152] gi|54013756|dbj|BAD55126.1| putative DNA polymerase III gamma subunit [Nocardia farcinica IFM 10152] Length = 825 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 124/351 (35%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPATFAEVVGQEHVTEPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLNCE 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D + L + + VD+ R +R Sbjct: 63 QGPTSTPCGVCASC----VALAPGGPGNLDVIELDAASHG---------GVDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPAHLIFIFATTEPDKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F L + + EQ + ++ V A GS ++ +L Sbjct: 170 HHYPFRLLPPATMRGLLGRICEQEHVTVEEAVYPLVIRAGGGSPRDSLSVLDQLLAGAGP 229 Query: 234 KIIS--SYIDLIHIPRQEYALQKMQQIADELLSQ--------------DQKIAFDFLIEF 277 + ++ + L+ + +Q +AD+ + ++ A D L F Sbjct: 230 EGVTYHRAVALLGVTDVALIDDAVQALADDDGAALFGTVDRVMEAGHDPRRFAVDLLERF 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + ++ A G + + + + ++ L R + H Sbjct: 290 RDLILLRAVPDAVERGLVAGPE---DVLDRMREQAERIGPATLTRYAELLH 337 >gi|103486288|ref|YP_615849.1| DNA polymerase III subunits gamma and tau [Sphingopyxis alaskensis RB2256] gi|98976365|gb|ABF52516.1| DNA polymerase III, subunits gamma and tau [Sphingopyxis alaskensis RB2256] Length = 565 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 120/316 (37%), Gaps = 26/316 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + K L R+ HA L G +G+GK + A + Sbjct: 31 VLARKYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTARLIAKALNC 90 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC + + D + + + N VD++R Sbjct: 91 IGPDGQGGPT----IDPCGVCEPCRAITEGRHIDVIEMDAASNT---------GVDDVRE 137 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T+ Sbjct: 138 IIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVTV 197 Query: 178 RSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----- 228 SRC ++ + L+ L++ + + AA GSV + IL Sbjct: 198 LSRCQRFDLRRITPDMLFAHFSAILQKEGVEAEAPAIWLIANAAEGSVRDGLSILDQAIA 257 Query: 229 HYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA 288 H D D + + + + +L + A D I A Sbjct: 258 HADLDGGGKVSAEQVRAMLGLSDRSSIAGLMAAILEGNSGGAIDLARAQYALGIEPVAMV 317 Query: 289 AALSGQLEEADQIAQI 304 L +L A +A++ Sbjct: 318 RGLM-ELTHAITLAKV 332 >gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] Length = 582 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T A + Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC + +A D L + + V +IR Sbjct: 71 VGPDGDGGPT----TEPCGACEACRSIAEGRHVDVLEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ + AA GSV A+ ++ D Sbjct: 178 LSRCQRFDLKRIEPEVMIAHLAKVADKEGARLTADALALITRAAEGSVRDAMSLM----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ L D+ D + ++K A A LSG Sbjct: 234 QAIAHGAGETTADEVRAMLGLA----------DRGRVLDLF-DLVMKGDAAGA-LAELSG 281 Query: 294 QLEEADQIAQIYFSLVKRVH 313 Q + I L + H Sbjct: 282 QYADGADPMAILRDLAEITH 301 >gi|221233207|ref|YP_002515643.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus NA1000] gi|220962379|gb|ACL93735.1| DNA polymerase III subunit gamma/tau [Caulobacter crescentus NA1000] Length = 623 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 32/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 73 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 132 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + + D L L + K VDE+R + Sbjct: 133 ETDTVKGPSVDLTTE--GYHCRSIIEGRHMDVLELDAASRTK---------VDEMRELLD 181 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 182 GVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 241 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K +++ + AA GSV + +L + Sbjct: 242 CQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 301 Query: 237 SS-------YIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 D++ + + + + + D L F ++ ++ Sbjct: 302 RGQTVTSTVVRDMLGLADRSQTIALYEHVMAGKTKDALEGFRALWGFGADPAVVMLDVLD 361 Query: 285 SAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+A+S L + + L S L R ++ +L KA + Sbjct: 362 HCHASAVSKALGPDALSMPKEQAARLAAIGAHTSAGTLSR---LWQMLLKAHD 411 >gi|225870106|ref|YP_002746053.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. equi 4047] gi|225699510|emb|CAW93067.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp. equi 4047] Length = 558 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G I L Q S ++ HA LF G +G GK + +A + Sbjct: 5 LYRKYRSQTFAEMVGQSVISTTLKQAVESEKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C+ + + + +L D + + + N VDEIR IR Sbjct: 65 NQVKGEPCNHCD------ICRDITTGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + ++V +ID V ++ A NALLK+LEEP V+FIL + I +TI SR Sbjct: 110 STYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ + +L L++ I + A G + A+ IL D+ +S Sbjct: 170 QRFEFKAIKQPAICEHLAAILDKEGIAYEIEALHLIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D + IA+E+ A D ++ ++++ A A L + Sbjct: 226 LSFDN----------RVTLAIAEEITGSISISALDDYVQHLIRQKTSQA-LANLETIYDS 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +++ L+ Sbjct: 275 GKSMSRFATDLLTYFRDL 292 >gi|311087868|gb|ADP67947.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 368 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 128/283 (45%), Gaps = 28/283 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Y + + G + I +S GR+HHA L G +GIGK T+ A + Sbjct: 12 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C K++ D + + + K V+E+R I Sbjct: 72 QNGITSDPCRQC------IICKEIEKGLCLDVIEIDGASRTK---------VEEMREILD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++R++ NALLK+LEEPP+ V F+L + I TI SR Sbjct: 117 SIYYSPIKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL K +SE +++ L+ + I + + A+GS+ A+ +L + + Sbjct: 177 CLYFKLQIISEEKIFEFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGN 236 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + D++ + ++Y+ + D +L +D K L Sbjct: 237 GHVNIKNVTDMLGLLPEKYSFL----LTDAVLKKDSKKTMLLL 275 >gi|1293572|gb|AAB61695.1| DNA polymerase III tau homolog DnaX [Caulobacter crescentus CB15] Length = 608 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 32/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 58 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 117 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + + D L L + K VDE+R + Sbjct: 118 ETDTVKGPSVDLTTE--GYHCRSIIEGRHMDVLELDAASRTK---------VDEMRELLD 166 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 167 GVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 226 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K +++ + AA GSV + +L + Sbjct: 227 CQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 286 Query: 237 SS-------YIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 D++ + + + + + D L F ++ ++ Sbjct: 287 RGQTVTSTVVRDMLGLADRSQTIALYEHVMAGKTKDALEGFRALWGFGADPAVVMLDVLD 346 Query: 285 SAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+A+S L + + L S L R ++ +L KA + Sbjct: 347 HCHASAVSKALGPDALSMPKEQAARLAAIGAHTSAGTLSR---LWQMLLKAHD 396 >gi|16124522|ref|NP_419086.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus CB15] gi|13421402|gb|AAK22254.1| DNA polymerase III, gamma and tau subunits [Caulobacter crescentus CB15] Length = 608 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 32/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 58 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 117 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + + D L L + K VDE+R + Sbjct: 118 ETDTVKGPSVDLTTE--GYHCRSIIEGRHMDVLELDAASRTK---------VDEMRELLD 166 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 167 GVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 226 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K +++ + AA GSV + +L + Sbjct: 227 CQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 286 Query: 237 SS-------YIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 D++ + + + + + D L F ++ ++ Sbjct: 287 RGQTVTSTVVRDMLGLADRSQTIALYEHVMAGKTKDALEGFRALWGFGADPAVVMLDVLD 346 Query: 285 SAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+A+S L + + L S L R ++ +L KA + Sbjct: 347 HCHASAVSKALGPDALSMPKEQAARLAAIGAHTSAGTLSR---LWQMLLKAHD 396 >gi|300087580|ref|YP_003758102.1| DNA polymerase III gamma and tau subunits [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527313|gb|ADJ25781.1| DNA polymerase III, subunits gamma and tau [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 556 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 20/234 (8%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NP 62 R + P + G + I L R+ A LF G +G GK + G A V N Sbjct: 8 RKWRPQRLAEVVGQKPITDTLLSALQQNRVAQAYLFCGPRGTGKTSTGRILAKAVNCLNN 67 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + S P C + + + + D + + + N +VD+IR + + Sbjct: 68 EGSGEPCNEC------SMCRAITNGSAMDIIEIDAASNN---------SVDDIRVLNDRV 112 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 + + ++V +ID ++ +A+NALLK+LEEPP +V+FIL + IL TI SRC Sbjct: 113 NYSPAEARYKVYIIDEFHMLSTSASNALLKTLEEPPPRVIFILATTELHKILPTIMSRCQ 172 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 F L+ +++ L ++ + + AA GS+ A +L Sbjct: 173 RFDFRRLTTDDITDKLAEIATSEGVDIERDGLVLLARAAGGSLRDAENLLQQTA 226 >gi|303232522|ref|ZP_07319208.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] gi|302481309|gb|EFL44383.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] Length = 679 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 117/300 (39%), Gaps = 29/300 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + G + + L+ ++ HA LF G +G GK T+ A + Sbjct: 4 LYTTYRPRTFTEVVGQQHVVATLTHAVTHNKIAHAYLFCGPRGTGKTTMARLLAKALTCT 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRY 120 + P C+ Q+A D L L + VD +R I Sbjct: 64 HTTNHLPCGACDA------CLQIARAQHPDVLELDAASRT---------GVDNVREEILN 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +S +++ +ID V + A NALLK++EEPP V+FI+ + I TI SR Sbjct: 109 RVSYAPVVAPYKIFIIDEVHMLTTAAFNALLKTIEEPPAHVIFIMCTTEPQKIPETILSR 168 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 F+S++ N++++ L+ I D + A G + A+ L Sbjct: 169 VQRFDFHSVAANDMFEHLKHVCASEHIQATDDAIWAIVHHAQGGMRDALSSLEQVSVFGS 228 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL--KEICKSAKAAA 290 I ++ + + Q+ AL + + LL F + F +++ + A+ A Sbjct: 229 GSIDAALVRTMFGETQDDALAR---LTCALLDARMADVFRCVCNFADTGEDLLRCARDLA 285 >gi|309790307|ref|ZP_07684874.1| DNA polymerase III, subunits gamma and tau [Oscillochloris trichoides DG6] gi|308227641|gb|EFO81302.1| DNA polymerase III, subunits gamma and tau [Oscillochloris trichoides DG6] Length = 568 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 122/322 (37%), Gaps = 36/322 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G E + + L R+ HA LF G +G+GK T+ A V Sbjct: 6 LYRKWRSQTFAELIGQEHVVQTLRNAIIEERVAHAYLFTGPRGVGKTTMARLLAKAVNCT 65 Query: 62 -PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P+ + P C P +A D + + + + +V++ R I Sbjct: 66 DPNPAARPCGQC------PACVAIAEGRAVDVIEMDAASHT---------SVEDAREIIE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V +ID ++ A NALLK+LEEPP +FIL + + +TI SR Sbjct: 111 RVQFRPAEMRSKVYIIDETHMLSTAAFNALLKTLEEPPDHAIFILATTEVHKVPATILSR 170 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L Q+ + + + AA GS+ A+ +L Sbjct: 171 CQRFTFTRHGIAATSNHLRQIASAEGLSLEAGVPEAIARAATGSMRDALGVLE------- 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 L + L+++ LL LIE +L +A A++G E Sbjct: 224 ----QLASFGQGMITLEQVH----SLLGMTAAAEVHALIEALLDADVGAALR-AVNGVSE 274 Query: 297 EADQIAQIYFSLVKRVHAFSMY 318 + + Q +V+R+ ++ Sbjct: 275 QGADVRQFTRDVVERLRTLLLF 296 >gi|182677255|ref|YP_001831401.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica subsp. indica ATCC 9039] gi|182633138|gb|ACB93912.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica subsp. indica ATCC 9039] Length = 651 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 71/321 (22%), Positives = 119/321 (37%), Gaps = 24/321 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + K LS + R+H A L G +G+GK T A Sbjct: 31 VLARKYRPSRFEDLIGQEAMVKTLSNAFDLDRIHQAYLLTGVRGVGKTTTARILARAFNY 90 Query: 61 N-PDFSKAPV---RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 P + P + D + + D + + + + +D+IR Sbjct: 91 EVPAENGQPAIEKPTVHMDRFGVHCQAIIESRHVDIIEMDAASHT---------GIDDIR 141 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I + +V +ID V +++ A N LLK+LEEPP+ V FI + + T Sbjct: 142 EIIESARYRPVSARVKVYIIDEVHMLSKQAFNGLLKTLEEPPEHVKFIFATTEIDKVPIT 201 Query: 177 IRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +RSRC + L L + ++ + AA GSV A+ +L Sbjct: 202 VRSRCQRFDLRRIEPAVLIDYLASVCAKENVLIEREALGLIARAAEGSVRDALSLL---- 257 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 D+ I+ P + L D+ D + ++ K+ A L Sbjct: 258 DQAIAHGTGQAD-PHSSAQPISATDLQAMLGLADRARIIDLFEAVMRGDMAKAL--ADLK 314 Query: 293 GQLEEADQIAQIYFSLVKRVH 313 + AQ+ L + VH Sbjct: 315 NLHDCGADPAQVLVELAEFVH 335 >gi|294676799|ref|YP_003577414.1| DNA polymerase III subunit delta' [Rhodobacter capsulatus SB 1003] gi|294475619|gb|ADE85007.1| DNA polymerase III, delta' subunit [Rhodobacter capsulatus SB 1003] Length = 369 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 30/361 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P L+G E E + S R+HHA + G +G+GKATL +R A +L Sbjct: 12 VEGAPHPRQTLHLYGQEKAEADFLTAFTSHRLHHAWMLTGPRGVGKATLAWRLARFLLSQ 71 Query: 62 PDFSKA-------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P PVR DP P +++ + A +L N K I V E Sbjct: 72 PLEDGGGLFGAPEPVRNLESDPEHPVCRRIMAGAEPRLFHLKRGPNDKETALSEDIRVVE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R++ FL L+A G RV+++D D + ANALLK LEEPP V F+L++H +L Sbjct: 132 VRKLTSFLHLSAADGGRRVVIVDAADELATAGANALLKLLEEPPPLVTFLLVTHQPARLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC ++ +L+ +L +AL+ D+ + A GSV AI++++ D + Sbjct: 192 PTIRSRCRELRLAALAPEDLAQALQGAGAETEDTL--ALSALAGGSVGEAIRLINLDGLE 249 Query: 235 IISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA----- 288 + + L+ +PR + QK +A+ + + + FD ++ + + + A+A Sbjct: 250 AYRALVGLMTGLPRIDR--QKAWALAEGMTGRGNEARFDLMLGLMDLFLARLARAGLTGA 307 Query: 289 ---------AALSGQL----EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 AAL +L A + A ++ L R NLD ++ ++ Sbjct: 308 PQPEAAPGEAALLTRLCPDGAAAQKWAGLHQDLGARARHGKAVNLDPATLVMDMVLAINA 367 Query: 336 C 336 Sbjct: 368 A 368 >gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] Length = 635 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 108/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 41 VLARKYRPQNFNDLIGQEPMVRTLKNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 100 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 101 KTDTVDQPTIDLSVP--GENCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 149 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 150 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 209 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L ++ +I D+ + A GS ++ I D+ I Sbjct: 210 CQRFDLRRIESGTLAAHLRRIAEAEEIAVDDASLAMIARAGEGSARDSLSIF----DQAI 265 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 266 AHGAGAVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 302 >gi|256398119|ref|YP_003119683.1| DNA polymerase III subunits gamma and tau [Catenulispora acidiphila DSM 44928] gi|256364345|gb|ACU77842.1| DNA polymerase III, subunits gamma and tau [Catenulispora acidiphila DSM 44928] Length = 863 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 115/324 (35%), Gaps = 36/324 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + L Q +GR++HA LF G +G GK T A + Sbjct: 22 LYRRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAYLFSGPRGCGKTTSARILARCLNCE 81 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C ++A+ D + + + + VD+ R +R Sbjct: 82 QGPTPTPCGTCRS------CVELANGGSGSIDVIEIDAASHG---------GVDDARDLR 126 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ +ID + NALLK +EEPP + FI + ++ TIRS Sbjct: 127 ERAFFAPAASRFKIYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRS 186 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + L + L + I V A GS A+ +L D++ Sbjct: 187 RTHHYPFRLIPPGVLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVL----DQL 242 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 ++ + +A LL D L+E +A + + Sbjct: 243 LAGADEN----------GVTYAMATGLLGYTDAALLDRLVEAFAGNDG-AAVFGLVDQVV 291 Query: 296 EEADQIAQIYFSLVKRVHAFSMYN 319 E + L++R + N Sbjct: 292 ESGHDPRRFLTDLLERFRDLVVLN 315 >gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti MAFF303099] gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099] Length = 604 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 31/314 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 21 VLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALNY 80 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + + D + + + + +D+IR I Sbjct: 81 KTATVDQP--SVDLAVLGEHCQAIMEGRHVDVIEMDAASHT---------GIDDIRDIIE 129 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 130 RVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 189 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + I D + AA GS ++ IL D+ I Sbjct: 190 CQRFDLRRIDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSIL----DQAI 245 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M +A D+ D E ++K +A A + Q + Sbjct: 246 AHGAGAVS----AEAVRAMLGLA------DRARIVDLF-EHVMKGDVAAALAEFRT-QYD 293 Query: 297 EADQIAQIYFSLVK 310 A + L + Sbjct: 294 TGADPAAVLTDLAE 307 >gi|310657422|ref|YP_003935143.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii DSM 519] gi|308824200|emb|CBH20238.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii] Length = 552 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 23/234 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L G + HA LF G +G GK + +A V Sbjct: 9 LYRIYRPTSFIDIVGQEQIISILKNQISEGSVSHAYLFSGGRGTGKTSTAKVFAKAVNCI 68 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P C+ D + + + N +VD IR +R Sbjct: 69 DPVNQEPCHKCSVCV----------QGDMDIIEIDAASNN---------SVDNIRELREN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + T + G ++V +ID V +++ A NALLK+LEEPP V+FIL + I +T+ SRC Sbjct: 110 VVYTPSYGKYKVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFILATTEPQKIPATVLSRC 169 Query: 182 LSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F + +N + K L++L + + + + + G + A+ +L Sbjct: 170 QRFDFKKIDKNQIIARMIKILDELGLTYEEEAIELIAQKSDGGMRDALSLLDQA 223 >gi|116513142|ref|YP_812049.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. cremoris SK11] gi|116108796|gb|ABJ73936.1| DNA polymerase III, tau subunit [Lactococcus lactis subsp. cremoris SK11] Length = 553 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +L D + L + N VDEIR IR Sbjct: 66 NQVDGEPCNNCF------ICDSITKGSLDDVIELDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR Sbjct: 111 STYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F S++ ++ L ++ + D D + AA G + A+ +L Sbjct: 171 QRFAFKSITTADIRTYLGKILGDEGVEFEDKALDVIAKAAEGGMRDALSLLDQA 224 >gi|15617079|ref|NP_240292.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681831|ref|YP_002468217.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682386|ref|YP_002468770.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471534|ref|ZP_05635533.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|14194666|sp|P57553|DPO3X_BUCAI RecName: Full=DNA polymerase III subunit gamma gi|25403641|pir||B84986 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp. (strain APS) gi|10039144|dbj|BAB13178.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622119|gb|ACL30275.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624674|gb|ACL30829.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086205|gb|ADP66287.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086783|gb|ADP66864.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087371|gb|ADP67451.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 361 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 28/283 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P Y + + G + I +S GR+HHA L G +GIGK T+ A + Sbjct: 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P R C K++ D + + + K V+E+R I Sbjct: 65 QNGITSDPCRQC------IICKEIEKGLCLDVIEIDGASRTK---------VEEMREILD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++R++ NALLK+LEEPP+ V F+L + I TI SR Sbjct: 110 SIYYSPIKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISR 169 Query: 181 CLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL K +SE ++K L+ + I + + A+GS+ A+ +L + + Sbjct: 170 CLYFKLQIISEEKIFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGN 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + D++ + ++Y+ + D +L +D K L Sbjct: 230 GHVNIKNVTDMLGLLPEKYSFL----LTDAVLKKDSKKTMLLL 268 >gi|322378607|ref|ZP_08053045.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1] gi|321148967|gb|EFX43429.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1] Length = 470 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 27/305 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + + L G E + LS R+ HA LF G +G GK + +A + Sbjct: 10 LALKYRPKHFKDLIGQESVSNTLSLALDHARLAHAYLFSGLRGSGKTSTARIFARALQCE 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N ++++R I Sbjct: 70 KGPSSIPCDSC------LNCLDALKDRHLDIIEIDGASNR---------RIEDVRNIIEQ 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ MID + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 115 TKYKPSLGRFKIFMIDEAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRT 174 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL--------H 229 F ++ + + L+ Q + S + + + GS+ + + Sbjct: 175 QHFHFKKIAPKAIVQRLQSILDQEGVSYEQSALEILARSGGGSLRDTLTLSDQAISYTNQ 234 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + + +S + +++ E + + + +++L K ++ I +L+E+ K A Sbjct: 235 HISAQGVSQMLGMVNTQILEDFFKAIVECKEDVLKDMLKALEEYEISMVLEEMGVFLKEA 294 Query: 290 ALSGQ 294 L G+ Sbjct: 295 VLQGR 299 >gi|319944209|ref|ZP_08018485.1| DNA polymerase III [Lautropia mirabilis ATCC 51599] gi|319742504|gb|EFV94915.1| DNA polymerase III [Lautropia mirabilis ATCC 51599] Length = 773 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 128/313 (40%), Gaps = 29/313 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+HHA L G +G+GK T+ A + Sbjct: 12 VLARKWRPRDFDSLVGQDTVVRALRHALDNQRLHHAYLLTGTRGVGKTTIARILAKALNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 S P C+ + + D+L + + N K V+E+ + Sbjct: 72 EKGVSSHPCGECSA------CRGVDEGRFPDYLEMDAASNRK---------VEEMAVVLE 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++ +A NA+LK+LEEPP V+F+L + + T+ SR Sbjct: 117 NAAYLPTVGRYKVFVIDEVHMLSTHAFNAMLKTLEEPPPHVIFVLATTDPQKVPVTVLSR 176 Query: 181 CLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C+ ++S +L L+ I + + + AA GS+ + +L D+ I Sbjct: 177 CMQFGLRNVSPATVAGHLANVLQAEDIPYEERSLELIGKAAGGSMRDGLSLL----DQAI 232 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + L + + + L + D + + + A+ Sbjct: 233 ALGAGQVKQATVQEMLGTVDEDLAPELLALLAAGDAAAVVQQADSMAARNVAHAQILMAM 292 Query: 292 SGQLEEADQIAQI 304 + +L+ +AQ+ Sbjct: 293 AAELQRVA-LAQV 304 >gi|27383227|ref|NP_774756.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium japonicum USDA 110] gi|27356401|dbj|BAC53381.1| DNA polymerase III tau subunit [Bradyrhizobium japonicum USDA 110] Length = 613 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 104/281 (37%), Gaps = 14/281 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 23 VLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + D L + + + VD++R+I Sbjct: 83 EMPDGSVKGPTIHMPNLGVHCQAIMESRHMDVLEMDAASHT---------GVDDVRQIND 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 134 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 193 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K L + + + AA GSV ++ +L Sbjct: 194 CQRFDLRRVEADVLMKHLASIAAKESVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAA 253 Query: 237 SSY-IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + D + ++ + D L D AF + Sbjct: 254 GTVKADAVRQMLGLADRTRVIDLFDSLARGDIAAAFKEFRD 294 >gi|167648530|ref|YP_001686193.1| DNA polymerase III subunits gamma and tau [Caulobacter sp. K31] gi|167350960|gb|ABZ73695.1| DNA polymerase III, subunits gamma and tau [Caulobacter sp. K31] Length = 632 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 127/353 (35%), Gaps = 32/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + SGR+ HA + G +G+GK T A + Sbjct: 85 VLARKYRPRTFEDLIGQEAMVRTLANAFSSGRIAHAFMLTGVRGVGKTTTARLLARALNY 144 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P D K + D L L + K VDE+R + Sbjct: 145 ETDTVHQPSVDLTID--GRHCKAIIEGRHMDVLELDAASRTK---------VDEMRELLD 193 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 194 GVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 253 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK-- 234 + + L K ++ + + AA GSV + +L + Sbjct: 254 TQRFDLRRVEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLLDQAIVQGE 313 Query: 235 -----IISSYIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 + D++ + + + + + D L F ++ ++ Sbjct: 314 RGSTVTAAVVRDMLGLADRGQTIALFENVMSGKPGDSLAGFRALWGFGADPAVVMLDLLD 373 Query: 285 SAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+++ L + + L S L R ++ +L KA E Sbjct: 374 HCHGASVAKALGPDALTLPKEQAARLTAIGAQTSAGTLSR---LWQMLLKAHE 423 >gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] Length = 603 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 117/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 15 VLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFIMTGIRGTGKTTTARIIAKGMNC 74 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + V +IR I Sbjct: 75 IGPDGTGQPTTE--PCGTCEHCTAIMEGRHVDVMEMDAASRT---------GVGDIREII 123 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 124 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 183 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + ++ + + AA GS A +L D+ Sbjct: 184 RCQRFDLRRIEPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLL----DQA 239 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS Q+ L D+ D LI+ IL+ A + + Sbjct: 240 ISHGAGETT----------ADQVRAMLGLADRGRVLD-LIDMILRGDAAGALSELGAQYA 288 Query: 296 EEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 289 EGADPLA-VLRDLAEITH 305 >gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum ferrodiazotrophum] Length = 576 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 35/324 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L++ SG M A LF GE+G+GK T+ A + Sbjct: 7 LARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILAKAINCQ 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ ++A D + + + VD++R +R Sbjct: 67 SGPTATPCLECSS------CLEIAEGRSPDVTEMDGASHT---------GVDDVRTLRES 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L T R+++ID V ++ +A NALLK+LEEPP V+FIL + + I T+ SRC Sbjct: 112 LVYAPLTSRSRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRC 171 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F L+ + + + I + V AA GS+ A+ +L D+++ Sbjct: 172 QHFRFRLLTVSQISDRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLL----DQLLR 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + + + +AD L D + L +L ++ + + A + Sbjct: 228 TGGESLTPAD----------VADLLGVTDHALEEKMLAAILLGDLSATLRTARTALD-TG 276 Query: 298 ADQIAQIYFSLVKRVHAFSMYNLD 321 D AQ+ SL +R LD Sbjct: 277 VDPRAQV-RSLARRFRDILHSTLD 299 >gi|324323719|gb|ADY24763.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 536 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 7 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 67 APLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A N LLK+LEEPP V+FIL + + TI SR Sbjct: 112 QVHLAPVTGKYKVYIIDEVHMLSNSAFNVLLKTLEEPPAHVIFILATTDPQKVPKTIISR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 172 CQQFEFRNIPLQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 227 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 228 AYATNNVTIEHVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 282 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 307 >gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] Length = 640 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L+G E + + L + +GR+ A + G +G+GK T A + Sbjct: 47 VLARKYRPSTFDDLYGQEPMVQTLQNAFETGRIAQAWMLTGVRGVGKTTTARILARGLNY 106 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P + D + + D + + + + + +IR I Sbjct: 107 EIPGEIDKP--TIHLDKPGVHCQAIMEGRHVDVIEMDAASHT---------GIGDIREIT 155 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 156 EAARYRPANARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLS 215 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L L ++ I D + A GS ++ +L D+ Sbjct: 216 RCQRFDLRRIESSTLVSLLREISGKEGIEISDEALTLIARAGEGSARDSLSLL----DQA 271 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ I + ++ L D+ D + +I + L Q Sbjct: 272 IAHGAGRI----------EADEVRQMLGLADRSRVIDLFEHVMRGDIASALDE--LKAQY 319 Query: 296 EEADQIAQIYFSLVKRVH 313 + A + L H Sbjct: 320 DVGADPAVVLSDLADFTH 337 >gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 548 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 134/350 (38%), Gaps = 38/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G I L + + HA LF G +G GK + +A V Sbjct: 5 LYRKYRSKTFDELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTSAAKIFARAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + D + + + N +VD+IR ++ Sbjct: 65 CSENGNPCNHCEN------CLSILDDRVMDVIEMDAASNN---------SVDDIRELKEK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V ++++A NALLK LEEPP+ ++FIL + I TI SR Sbjct: 110 VVYPPQNLKYKVYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ + + L+ + + + + G++ A+ +L D Sbjct: 170 QRFNFKRINPEIIIENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTDK 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE---------FILKEIC 283 + +++ I + + +I+ L+ ++ + A L E ++ ++ Sbjct: 230 HISYNLATEILGITSDDI----LFKISRALIDRNLENAISSLQEIYSKGKDISILISDLI 285 Query: 284 KSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + + ++ ++ L + M ++DR I +L++ Sbjct: 286 SHFRNLMIVKTIKNTSELL-YTTRLDDYIKEACMLSVDRIIDILKILNET 334 >gi|88812993|ref|ZP_01128236.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis Nb-231] gi|88789771|gb|EAR20895.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis Nb-231] Length = 553 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 129/338 (38%), Gaps = 46/338 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L +GR HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPRTFSEMAGQEHVLRALCNGLANGRCHHAYLFAGTRGVGKTTIARVLAKCLNC 64 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C +++ D + + + V++ R + Sbjct: 65 ERSGITAEPCGECTA------CREIDQGRFVDLIEVDAASRT---------RVEDTRELL 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G +++ ++D V +++++ NALLK+LEEPP V F+L + + +T+ S Sbjct: 110 DNVQYAPARGRFKIYLVDEVHMLSQHSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RCL L + L ++ + + + AA GS+ A+ +L D+ Sbjct: 170 RCLQFNLKRLPAGRIADYLTEILAREGVGAEPAALRRLGHAADGSMRDALSLL----DQA 225 Query: 236 ISSYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAA- 289 I+ + L ++ ++ + L +QD + + + SA A Sbjct: 226 IAYGAGAVRDEDVREMLGGIESDFLFELLEALATQDGRALLEVAARMAERTPDFSAAIAE 285 Query: 290 ----------------ALSGQLEEADQIAQIYFSLVKR 311 AL L E D++ + L Sbjct: 286 LLLILHRLALVQSVADALPEDLPERDRLLDLGQRLTPE 323 >gi|314922555|gb|EFS86386.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL001PA1] Length = 627 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 122/351 (34%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVL 434 >gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT 9312] gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT 9312] Length = 579 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 21/233 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-- 61 + + P L G I L Q + ++ A LF G +G GK + +A + Sbjct: 10 QKYRPSNLDELVGQNFISITLKQALLTKKISPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + + P C+ +Q+ D + + + N V+ IR I Sbjct: 70 EEPTIHPCGKCD------LCRQITDGNALDIIEIDAASNT---------GVENIREIIER 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 W+V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC Sbjct: 115 ARFAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRC 174 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F +S +++++ L E+ I + + + G + A +L Sbjct: 175 QKFDFRRISPSDIFQHLSEIAEKESIKYEVQALNIIAKRSNGGMRDAQSLLEQ 227 >gi|288940170|ref|YP_003442410.1| DNA polymerase III subunits gamma and tau [Allochromatium vinosum DSM 180] gi|288895542|gb|ADC61378.1| DNA polymerase III, subunits gamma and tau [Allochromatium vinosum DSM 180] Length = 549 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 124/333 (37%), Gaps = 37/333 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + + LS ++HHA LF G +G+GK TL + + Sbjct: 5 VLARKWRPRSFDDMVGQQHVVRALSNALDRDQLHHAYLFTGTRGVGKTTLARILSKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C+ +++ S D L + + K VD+ R + Sbjct: 65 EQGVGSHPCGVCSA------CREIDSGRFVDLLEVDAASRTK---------VDQTRELLE 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V + ++ NALLK+LEEPP V F+L + I T+ SR Sbjct: 110 NVPYAPARARFKVYLIDEVHMFSSHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSR 169 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 CL + L + LE + + + AA GS+ A+ +L Sbjct: 170 CLQLNLRRLLPGEIADRLTYVLEHEGLAFEPAALPLLARAADGSLRDALSLLDQAIAFGG 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-------------ELLSQDQKIAFDFLIEFI 278 I S ++ + AL + +AD ++ D LI + Sbjct: 230 GRVIESETRAMLGTVSGDLALDILDALADGDGAAVLGSVERVAAMTPDFAELLRELIGLL 289 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 + A L+ + ++ + L Sbjct: 290 HRLALIQQVPATLTADDPDRTRLLALAGRLAPE 322 >gi|229113196|ref|ZP_04242691.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] gi|228670222|gb|EEL25570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] Length = 541 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 12 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 72 APLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 117 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 177 CQQFEFRNIPLQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 232 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 233 AYATNNVTIEHVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 286 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 287 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 312 >gi|94987358|ref|YP_595291.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis PHE/MN1-00] gi|94731607|emb|CAJ54970.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis PHE/MN1-00] Length = 574 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 145/359 (40%), Gaps = 49/359 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + + G E ++K LS+ ++ A L G +G+GK T+ +A + Sbjct: 6 LAIRYRPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAKALNCQ 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D + + + N VD+ RR+R Sbjct: 66 QAPTAEPCNTCEQ------CKRITKGIHVDVVEIDGASNR---------GVDDARRLRES 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID + R + NALLK+LEEPP F+ + TI SRC Sbjct: 111 IAYAPMEGRYKVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRC 170 Query: 182 LSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L++ L L+Q I D+ + A GS+ ++ +L + Sbjct: 171 QHFVLKPLTKEELIYNLIHVLKQENICYEDNAIQLIARRASGSIRDSMSLLGQTLMFSNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADE-----------LLSQDQKIAFDFLIE----- 276 + +++ + QE+ + ++ D+ LL + + F FL E Sbjct: 231 ILTENVVRNVLGLAEQEFYEKLLRAFKDQNYEEVVKLNQILLEKGVDLGF-FLREFATLW 289 Query: 277 ---FILKEICK--SAKAAALSGQLEEADQIAQIYFSLVKRVHAF-SMYNLDRRQMIFHL 329 F+L+++ K + L ++ +A ++ + +HA M ++RQ++ L Sbjct: 290 RNLFLLRKVSKLDANMLGMLPDEIPRLTSLANLFEPI--YLHAAWQMVLENQRQILMSL 346 >gi|157736546|ref|YP_001489229.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri RM4018] gi|157698400|gb|ABV66560.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri RM4018] Length = 643 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 139/353 (39%), Gaps = 25/353 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G I + LS S R+ HA LF G +G GK + A +L Sbjct: 10 VLALKYRPKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALLC 69 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + P +C+ K + D + + + N +D+I+ + Sbjct: 70 SQGPTSKPCDICDN------CKSANASKHLDIIEMDAASNR---------GIDDIKDLIE 114 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++ ++V +ID V + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 115 HTKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSR 174 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 +FN ++++++ L + I + + + + GS+ + +L Sbjct: 175 TQHFRFNKIAQSDVVHHLSYILNKENIDFEQNALEILARSGQGSLRDTLTLLDQAIIFSK 234 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-ELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 +S +D++ + + I + E +++ K + + I E+ K Sbjct: 235 GKVNTTSVVDMLGLIDPKMMDNIFSMILNKEDITKLVKELEVYEVSQICDEMTIYLKDKM 294 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 LS + + +F ++ N D ++ K E +L D Sbjct: 295 LSRDNKFDLLLFDRFFRILSDAKQLLAINSDGTFVLILTFMKMIEATNLRTID 347 >gi|300118105|ref|ZP_07055853.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] gi|298724416|gb|EFI65110.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] Length = 536 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 7 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 67 APLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 112 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 172 CQQFEFRNIPLQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 227 Query: 237 SSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + I+ + I + A+Q ++++ + +D D L + ++ Sbjct: 228 AYATNNVTIEHVAIVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 282 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 307 >gi|319763145|ref|YP_004127082.1| DNA polymerase iii, subunits gamma and tau [Alicycliphilus denitrificans BC] gi|330825208|ref|YP_004388511.1| DNA polymerase III subunits gamma and tau [Alicycliphilus denitrificans K601] gi|317117706|gb|ADV00195.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus denitrificans BC] gi|329310580|gb|AEB84995.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus denitrificans K601] Length = 618 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 134/373 (35%), Gaps = 47/373 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + + D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACQDIDRGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLARVLAQEGVAAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL------------- 274 + + ++ + + + ++ D L D + + Sbjct: 230 IAFGSGQLQEA---AVRQMLGSVDRGHVFRLIDALAQGDGRTVVETADTLRTHGLSAAST 286 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +E + + + A A+ D + + D Q+++ + R Sbjct: 287 LEEMSAVLQRMAVLQAVPQMAAAVDATDPEAAEIARLAALMPA---DETQLLYSICLHGR 343 Query: 335 ECNDLYFRDFYAI 347 L ++ A+ Sbjct: 344 TELGLAPDEYAAL 356 >gi|311112888|ref|YP_003984110.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC 17931] gi|310944382|gb|ADP40676.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC 17931] Length = 957 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 121/345 (35%), Gaps = 43/345 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFAEVIGQEHVTEPLITALTNNRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + D + + + + VD R +R Sbjct: 65 QGPTPTPCGVC--DSCRELSR--DGGGSLDVIEMDAASHG---------GVDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ + FI + +L TIRSR Sbjct: 112 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH-------- 229 F + L LE + + V A GSV ++ IL Sbjct: 172 HHYPFRLVPPEVLLPYLEKLCGEENVPVESGVLQLVIRAGGGSVRDSLSILDQLIAGANT 231 Query: 230 --------------YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 Y +++ + ID + + ++ QD + + L+ Sbjct: 232 ESGISYDRAVALLGYTHAQLLDNVIDAFSAQDAPSLFEAVSRVVAT--GQDPRRFVEDLL 289 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 E + I A + L+ A L + F+ L Sbjct: 290 ERLRDLIVVQAVPQNAAQILQGVP--ADQIERLKTQAQTFTTAQL 332 >gi|218289068|ref|ZP_03493305.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius LAA1] gi|218240893|gb|EED08071.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius LAA1] Length = 583 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 133/360 (36%), Gaps = 38/360 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P + L G + + L+ SG++ HA LF G +G GK + A V Sbjct: 6 LYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAVNCL 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P P C + + D + + N VDEIR +R Sbjct: 66 QPRDGFEPCNAC------EACMSIQRGSNVDVQEIDAASNR---------GVDEIRDLRD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V ++D V + A NALLK+LEEPP VLF+L + + +TI SR Sbjct: 111 HVHYLPTMAKKKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISR 170 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F ++ + + L + I DS + AA G + A+ + Sbjct: 171 CQRFDFRRIAPEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGN 230 Query: 237 SSYIDL-IHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 D + + + + +L + A D L + A S + Sbjct: 231 GRIDDATVADVVGSVDIGSLVALVGDLAGRSFLSAMDRLGRW-------YASGKDASRIV 283 Query: 296 EEADQIAQIYF--SLVKRVHAFSMYNLDRRQMIFH--------LLSKARECNDLYFRDFY 345 + Q+ + F L + HA + +D Q + LL+ R +LY + Y Sbjct: 284 HDLLQVVRDLFIVKLSQSPHALAGKPIDPYQPVASRDDVTTDWLLAAMRRLGELYTQLRY 343 >gi|17232424|ref|NP_488972.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120] Length = 655 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 120/332 (36%), Gaps = 34/332 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I L+ + ++ A LF G +G GK + A + + Sbjct: 9 KYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P +C+ + + D + + + N VD IR + Sbjct: 69 KPTAEPCGVCD------VCQGITKGYSLDVIEIDAASNT---------GVDNIRELIEKA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP+ V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DK 234 F + + K L + I V + G + A +L + Sbjct: 174 RFDFRRIQLEAMVKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEV 233 Query: 235 IISSYIDLIHIPRQEYALQKMQQIAD---ELLSQDQKIAFDFLIE--FILKEICKSAKAA 289 DL+ ++ L + IA EL+ + D E IL+ + + Sbjct: 234 TPEQVWDLVGSVSEQDLLVLLAAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDL 293 Query: 290 ALSGQLEEADQIA----QIYFSLVKRVHAFSM 317 ++ + Q + +LV+ + + Sbjct: 294 LIAKTAPNRHNLVACTQQTWKALVESAQSLPI 325 >gi|325279833|ref|YP_004252375.1| DNA polymerase III, subunits gamma and tau [Odoribacter splanchnicus DSM 20712] gi|324311642|gb|ADY32195.1| DNA polymerase III, subunits gamma and tau [Odoribacter splanchnicus DSM 20712] Length = 369 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 113/290 (38%), Gaps = 29/290 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G I L + ++ A LF G +G+GK T +A + Sbjct: 6 VSARKYRPASFDTVVGQLAITSTLRNAIVNHQLAQAYLFTGPRGVGKTTCARIFAKTINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N + P C K + + L + N +VD+IR + Sbjct: 66 LNLQPNAEPCNECES------CKAFNAGRSLNIHELDAASNN---------SVDDIRGLV 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G + V +ID V ++ +A NA LK+LEEPP +FIL + IL TI S Sbjct: 111 EQVRILPQVGKYSVYIIDEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 RC FN + + + L+ + I ++ D + A G++ A+ I Sbjct: 171 RCQIYDFNRMKVGDTVEHLKYISAKEGITAEEAALDVIAQKADGAMRDALSIFDQVVSFC 230 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + I+ +++ +Y ++ D + AF E I K Sbjct: 231 GKNLTYEKVIENLNVLDYDYYF----RLTDLFNAGKVGEAFLLFNEIIGK 276 >gi|312867346|ref|ZP_07727555.1| DNA polymerase III, subunit gamma and tau [Streptococcus parasanguinis F0405] gi|311097047|gb|EFQ55282.1| DNA polymerase III, subunit gamma and tau [Streptococcus parasanguinis F0405] Length = 558 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 34/318 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + +L G + + + L Q ++ HA LF G +G GK ++ +A + Sbjct: 5 LYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + + +L D + + + N VDEIR IR Sbjct: 65 NQVNGEPCNDCY------ICESITNGSLEDVIEIDAASNN---------GVDEIRDIRDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +V +ID V ++ A NALLK+LEEP + V+FIL + I +TI SR Sbjct: 110 STYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRV 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F S+ ++ LE + I+ + A G + A+ IL D+ +S Sbjct: 170 QRFEFKSIKLPDIIHHLESILATEGIVYEADAVQIIARRAEGGMRDALSIL----DQALS 225 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 + IA+E+ A D + IL +A L+ + Sbjct: 226 LTAGS----------ELTTAIAEEITGSISLAALDQYVAAILAHDATAALDQ-LAIIFDN 274 Query: 298 ADQIAQIYFSLVKRVHAF 315 +A+ L++ + Sbjct: 275 GKNMARFVTDLLQYLRDL 292 >gi|302872970|ref|YP_003841603.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulovorans 743B] gi|307686515|ref|ZP_07628961.1| DNA polymerase III subunits gamma and tau [Clostridium cellulovorans 743B] gi|302575827|gb|ADL49839.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulovorans 743B] Length = 539 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 121/327 (37%), Gaps = 29/327 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + L + R+ HA L G +G GK + + V Sbjct: 6 LYREWRPRNFGEVVGQSQVTVTLKNQVKNNRIAHAYLLCGTRGTGKTSTAKILSKAVNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D + + + VD+IR I Sbjct: 66 NPIDGEPCNEC------EMCKKINEGIAIDVTEMDAASHN---------GVDDIRNIIED 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V + A NA LK+LEEPP++VLFIL + + TI SRC Sbjct: 111 VQYPPQEAKFKVYIIDEVHMLTMGAVNAFLKTLEEPPKRVLFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + ++ L + I D F+ G++ A+ IL + Sbjct: 171 QRYDFKRIRNVDIQARLRSIVDNKNIEADDLALSFIARICDGALRDAVSILDQSIAMGNG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-----IEFILKEICKSAK 287 I+++ I E+ L+ + I ++ + + + D + + +KE+ + Sbjct: 231 VVNYDDVINILGIVTNEHLLRLTECIIEKDIGKAIHVVDDVIYSGKDVNLFVKELVTHMR 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHA 314 + E +++ + + V Sbjct: 291 NLLMVKVTENPEEVLDMSMENIAHVKE 317 >gi|295691235|ref|YP_003594928.1| DNA polymerase III subunits gamma and tau [Caulobacter segnis ATCC 21756] gi|295433138|gb|ADG12310.1| DNA polymerase III, subunits gamma and tau [Caulobacter segnis ATCC 21756] Length = 616 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 32/353 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 66 VLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNY 125 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D K P + + + D L L + K VDE+R + Sbjct: 126 ETDTVKGPSVDLTTE--GYHCRAIIEGRHMDVLELDAASRTK---------VDEMRELLD 174 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 175 GVRYAPVEARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 234 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K +++ + AA GSV + +L + Sbjct: 235 CQRFDLRRVEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 294 Query: 237 SSY-------IDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKEICK 284 D++ + + + + + D L F ++ ++ Sbjct: 295 RGATVTATVVRDMLGLADRGQTIALYEHVMAGKTKDALEGFRALWGFGADPAVVMLDVLD 354 Query: 285 SAKAAALSGQL--EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 A+A+S L + + L S L R ++ +L KA E Sbjct: 355 HCHASAVSKALGPDALSMPKEQAARLAAIGAHTSAGTLSR---LWQMLLKAHE 404 >gi|78188902|ref|YP_379240.1| ATPase [Chlorobium chlorochromatii CaD3] gi|78171101|gb|ABB28197.1| ATPase [Chlorobium chlorochromatii CaD3] Length = 396 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 19/243 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E + + + SGR+ H +F G +G+GK T +A + Sbjct: 5 VIARKYRPAKFSDITAQEHVTRTIQNALRSGRIGHGYIFSGLRGVGKTTAARIFARALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 A +PC + + + + N VD+IR + Sbjct: 65 QKLIDDADYLQQVTEPCGECESCRDFDAGTSMNISEFDAASNN---------GVDDIRTL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I TI Sbjct: 116 RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPPTIS 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L+Q+ I V A GS+ A IL D+ Sbjct: 176 SRCQRFNFKRIPLEAIQQQLQQICEAEHIQVEADALQLVARKAQGSMRDAQSIL----DQ 231 Query: 235 IIS 237 +I+ Sbjct: 232 VIA 234 >gi|325962021|ref|YP_004239927.1| DNA polymerase III subunit gamma/tau [Arthrobacter phenanthrenivorans Sphe3] gi|323468108|gb|ADX71793.1| DNA polymerase III, subunit gamma/tau [Arthrobacter phenanthrenivorans Sphe3] Length = 1208 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 119/354 (33%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L R++HA LF G +G GK T A + Sbjct: 17 LYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 76 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 77 QGPTDTPCGTC--PSCIELAR--GGSGSLDVIEIDAASHG---------GVDDARDLRER 123 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 124 ATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRT 183 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L LE Q + V A GSV ++ Sbjct: 184 HHYPFRLVPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGP 243 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L Y ++ ++ + + + ++ D + + L+E Sbjct: 244 NGLDYELAVALLGYTHASLLDDVVEAVAASDAATVFRAVDRVIQT--GHDPRRFVEDLLE 301 Query: 277 FILKEICKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I A + L ADQIA+ L + H L R + + Sbjct: 302 RFRDLIIVQAMPESAQTILRGMPADQIAR----LQNQAHNLGAAELSRAADVTN 351 >gi|162147583|ref|YP_001602044.1| putative DNA polymerase III delta' subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161786160|emb|CAP55742.1| putative DNA polymerase III delta' subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 24/325 (7%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G ++ + +GR+HHA L G +GIGKAT+ F A +L+ Sbjct: 1 MVGQQEARRAFEDALRTGRLHHAWLLTGTEGIGKATMAFWMARLLLKGT----------- 49 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 DP SP +++A+ + D L ++ ++ K + R I D++R I FL TA WRV Sbjct: 50 -DPDSPAARRIAAGSHADLLTIARGVDEKRQRLRAEIVADDVRPIGQFLHRTAAEDGWRV 108 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +++D + MNR+AANA+LK LEEPP + + IL +L TIRSRC ++K LS + Sbjct: 109 VIVDGAEYMNRSAANAILKLLEEPPPRAILILTCATPGRLLPTIRSRCRTLKLGPLSPAD 168 Query: 194 LYKALEQLKIMGWDSKRDFVKI---AAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEY 250 ++ L + D+ D + A+GS RA+ +L D + + ++ P Sbjct: 169 MHAVLS---TVVEDAAPDDIARVVPLAHGSPGRALALLAGDGGALGALVARVMDAPAGPG 225 Query: 251 ALQ--KMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE--ADQIAQIYF 306 A++ +M +IA+ +L ++ F + + I +AA E AD++ ++ Sbjct: 226 AMREGEMYEIAEAVLKRENG--FSVFFDLLCDAISVRTRAAVRGTIPAERPADRMVDLWR 283 Query: 307 SLVKRVHAFSMYNLDRRQMIFHLLS 331 LV +NLD+ Q I L+ Sbjct: 284 RLVHLRAETEQFNLDKHQAILSGLT 308 >gi|229051606|ref|ZP_04195076.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] gi|228721717|gb|EEL73191.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] Length = 541 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 12 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 72 APLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 117 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 177 CQQFEFRNIPLQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 232 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 233 AYATNNVTIEHVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 286 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 287 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 312 >gi|319898354|ref|YP_004158447.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae 73] gi|319402318|emb|CBI75857.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae 73] Length = 634 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 119/326 (36%), Gaps = 31/326 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + L+ + +GR+ A + G +G+GK T A + Sbjct: 16 VLARKYRPQNFSDLIGQEAMVCTLNNAFKTGRIAQAWMLTGIRGVGKTTTARILARALNY 75 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + D Q+ D + + + + +D+IR I Sbjct: 76 KTKDIDQPTTL--FDKLGEHCTQIIEGRHMDVIEMDAASHT---------GIDDIREIIE 124 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + TI SR Sbjct: 125 QIRYRPISARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSR 184 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L Q+ +I D + AA GSV A+ I D+ I Sbjct: 185 CQRFNLQRIETAVLVNHLRQIAQLEEIEVQDQALFVIARAAEGSVRDALSIF----DQAI 240 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M + DQ D E I+K A + Sbjct: 241 AHGNGKVD----AIAVRIMLGLT------DQSRIIDLF-ESIMKGNIVHALHELRNQYNA 289 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDR 322 AD I L +H + L Sbjct: 290 GADPFV-ILTELADFIHLITRLRLTP 314 >gi|206890696|ref|YP_002248894.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742634|gb|ACI21691.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio yellowstonii DSM 11347] Length = 512 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 118/280 (42%), Gaps = 20/280 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G + + K L +G++ HA +F G +G+GK + A + Sbjct: 6 LARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAKALNC- 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D P C P + + + + + +V+ IR +R Sbjct: 65 IDSQNKPCDKC------PSCVAIKEGRAMSVIEIDAASHT---------SVENIRDLREN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G+++V +ID ++++A NA LK+LEEPP V+F+L + I T+ SRC Sbjct: 110 IRYASAEGFYKVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRC 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 ++F + N + + L+ Q I + + + GS+ A+ +L + Sbjct: 170 QHLQFKRIPINLIKQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTEN 229 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 D +++ + + ++ + L+ +++ + E Sbjct: 230 VTQDNVNLLIGGTDVNVLYELTECLIDGNREKIILKVEEL 269 >gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] Length = 588 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC + + D + + + V +IR Sbjct: 71 IGPDGQGGPT----TEPCGQCEHCRAIMEGRHVDVMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I ++ A + +++ +ID V ++ NA NALLK+LEEPP V FI + + T+ Sbjct: 118 IIESVNYRAASARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIALLRRIADREGAQITDDALALITRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D + IL+ A + + Sbjct: 234 QAISHGAGETT----------ADQVRAMLGLADRGRVLDLF-DMILRGDAAGALSELSAQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 283 YAEGADPLA-VLRDLAEITH 301 >gi|156742265|ref|YP_001432394.1| DNA polymerase III subunits gamma and tau [Roseiflexus castenholzii DSM 13941] gi|156233593|gb|ABU58376.1| DNA polymerase III, subunits gamma and tau [Roseiflexus castenholzii DSM 13941] Length = 644 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 28/279 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L G E + + L GR+ HA LF G +G+GK T+ A V Sbjct: 6 LYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCT 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 ++ P +C + +A D + + + + +V++ R I Sbjct: 66 APPAERPCGVCES------CRSIAEGRAVDVIEMDAASHT---------SVEDAREIIER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +V +ID V ++ A NALLK+LEEPP LFIL + + +TI SRC Sbjct: 111 VQFRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRC 170 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 FN + ++ L Q + + + AA GS+ A+ +L D++++ Sbjct: 171 QRFVFNRHTVASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVL----DQLMA 226 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAF 271 + + + L Q++ + D L++ D A Sbjct: 227 YGGGTVSLEQVRNLLGASEMQEVTTLVDALIAADLPGAL 265 >gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides 2.4.1] gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides 2.4.1] Length = 582 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 121/320 (37%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T A + Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + ++ D + + + V +IR Sbjct: 71 VGPDGTGGPT----TEPCGQCEPCRAISEGRHVDVMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L + + AA GSV A+ ++ D Sbjct: 178 LSRCQRFDLKRIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ Q+ L D+ D + ++K +A A Sbjct: 234 QAIAHGAGETT----------ADQVRAMLGLADRGRVLDLF-DLVMKGEAAAALAELSGQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YADGADPMA-VLRDLAEITH 301 >gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str. NATL2A] gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. NATL2A] Length = 565 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 25/302 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G + I+ L Q S R+ A +F G +G GK + +A + + Sbjct: 11 KYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCLKSE 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C K ++S D + + + N V+ IR + Sbjct: 71 KATTTPCGQC------ELCKGISSGNALDVIEIDAASNT---------GVENIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V +ID ++ A NALLK+LEEPP++V+FIL + +L TI SRC+ Sbjct: 116 RFAPAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCM 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F ++ ++L L ++ +I + + + G + A +L D ++ Sbjct: 176 RFDFRRIALHDLESHLINIAKKEEIQINEEAISLIAKHSQGGLRDAESLL--DQVSLLPP 233 Query: 239 YIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 I ++I A+ +++ +A L+++D + I K A ++ L Sbjct: 234 PITQLNIINLIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILR 293 Query: 297 EA 298 + Sbjct: 294 DL 295 >gi|317495187|ref|ZP_07953557.1| DNA polymerase III [Gemella moribillum M424] gi|316914609|gb|EFV36085.1| DNA polymerase III [Gemella moribillum M424] Length = 569 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 85/352 (24%), Positives = 138/352 (39%), Gaps = 53/352 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G I L ++ HA LF G +G GK ++ +A V N Sbjct: 5 LYRKYRPQTFKDIVGQNHIVSVLKNAMDKNQISHAYLFYGPRGTGKTSIAKIFANEVNNN 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K D + + + N VDE+R I+ Sbjct: 65 EVYQKE---------------------NVDIIEIDAASNN---------GVDEVRDIKEA 94 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V + A NALLK+LEEPP V+FIL + I STI SRC Sbjct: 95 IKFLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPSTILSRC 154 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +LS+ L + L+ + I + + A G + AI IL +S Sbjct: 155 QRFEFKNLSQQQLVERLKYISKTENIDIEAKAIEKIATLAKGGLRDAISILDQ-----VS 209 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + I + I + S + +F + IL +I S + +E+ Sbjct: 210 NYSEKITL----------NNILEVTSSIGENEILEFYKKLILGDINGSLLMY--NNFVEQ 257 Query: 298 ADQIAQIYFSLVKRVHAFSMY-NL-DRRQMIFHLLSKARECNDLYFRDFYAI 347 A + L+ +Y NL DR +++ + F FY I Sbjct: 258 AKDTKLLLNDLINITRDVIVYKNLKDRAYTGYNIEQLDDAIGTISFDYFYEI 309 >gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] Length = 623 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 116/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKNFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 80 YKTADVDKPTIDLRAP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ ++ Q A++ M +A D+ D + ++ + A Q Sbjct: 245 IAHGAGVV----QAEAVRGMLGLA------DRARIVDLFQHIVKGDVAGAL--AEFQSQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLTDLADFTH 310 >gi|221633732|ref|YP_002522958.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM 5159] gi|221156252|gb|ACM05379.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM 5159] Length = 562 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 115/317 (36%), Gaps = 31/317 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + L G E I + L R+ HA LF G +G GK + A V Sbjct: 6 LYRKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAKAVNCR 65 Query: 62 -PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D + P C + +A+ D + + + N VD+IR +R Sbjct: 66 DADPWRRPCNQCGA------CRSIATGTAVDIIEIDAASNR---------GVDDIRDLRE 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + +ID + R+A NA LK+LEEPP V+F+L + + T+ SR Sbjct: 111 KVKYAPVELRTKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASR 170 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F L + + + L + I D + A GS+ A+ +L Sbjct: 171 CQRFDFRRLPVDRMVERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLA---- 226 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + E ++A ++L + L+ I A + Sbjct: 227 ------VFASDGENEPVITLELARQVLGGSRDDRLLDLVTAIADRDAGRALRLVAEAA-D 279 Query: 297 EADQIAQIYFSLVKRVH 313 D + Q+ LV+ Sbjct: 280 AGDDLHQLGRELVRFTR 296 >gi|296445854|ref|ZP_06887806.1| AAA ATPase [Methylosinus trichosporium OB3b] gi|296256682|gb|EFH03757.1| AAA ATPase [Methylosinus trichosporium OB3b] Length = 358 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 174/344 (50%), Gaps = 10/344 (2%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 A P FGH + E+ L + GR+ A+L G +GIGKATL +R+A ++ +P Sbjct: 15 AEAPHPRETTGFFGHAEAERELLDAFRRGRLAQAVLIGGPEGIGKATLAWRFARFLVAHP 74 Query: 63 DFSKAPVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D + P + P SP +++ + AL D L S N K+ K T I ++++R++ Sbjct: 75 DPTSPPAQTAASLELPPDSPVTRRIRALALPDVTLLRRSWNEKSKKHYTEIRIEDVRKLI 134 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + ++ G WR+ ++D VD +NR++ANALLK +EEPP++ LF+LI+H +L TIRS Sbjct: 135 HLFQQSSGAGGWRIAIVDSVDDLNRSSANALLKLIEEPPERSLFLLIAHRPGRVLPTIRS 194 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMG---WDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 RC + L+EN + A+ L +++ A GSV A+++L D Sbjct: 195 RCRKLTLAPLAENEIVAAVRALGAPWSERSEAELAAAAARAEGSVREALRLLDGDGVAFD 254 Query: 237 SSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 S+ + +P+ ++ + +AD L +D + A++ + + + + ++ + A G Sbjct: 255 SALRGMFARLPQVDWL--AVHALADRLTGRDNESAYETFMTAVFRFLDRAVREKAGQGAG 312 Query: 296 EEA-DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 + A+ + + + +YN D+R +I + + E Sbjct: 313 AASLVPYARAFERIDEAARDTEVYNFDKRGLILSIFADLEEAAR 356 >gi|288574784|ref|ZP_06393141.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570525|gb|EFC92082.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio peptidovorans DSM 11002] Length = 554 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 20/235 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P Q + G + + + G + HA LF G +G GK T+ +A V + Sbjct: 5 LYRRYRPQTFQDVTGQNTAVEVVRRAVSRGNVGHAYLFSGPRGCGKTTVARLFAKAVNCS 64 Query: 62 -PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P +C+ + ++ D + + + N VDEIR ++ Sbjct: 65 DRGKGGEPCNVCDS------CRSISEGNSLDVVEIDGASNN---------RVDEIRDLKT 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L + + ++V ++D V ++ A NALLK+LEEPP+ VLFIL + + TIRSR Sbjct: 110 HVGLASFSSPYKVYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 C I F+S+ ++ L E K+ D + A G + + +L Sbjct: 170 CQHIPFHSIGLEDMVSRLRYVTELEKVKCDDDSLWEIARQADGGLRDGLSLLEQA 224 >gi|167772016|ref|ZP_02444069.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM 17241] gi|167665814|gb|EDS09944.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM 17241] Length = 536 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 23/260 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L +G+ HA LF G +G GK T A V Sbjct: 5 LYRKWRPKTFDDVVGQEHITATLKNEVAAGKFSHAYLFTGSRGTGKTTCSKIVAKAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + ++ D + + + N VD IR++R Sbjct: 65 RPVDGNPCNEC------AACRGIDDGSVLDVVEIDAASNN---------GVDNIRQLREE 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +RV ++D +++ A NALLK LEEPP+ V+FIL + +L TI SRC Sbjct: 110 AYFLPSVVKYRVYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDCD 233 F+ + + L EQ D + + G + A+ +L + D Sbjct: 170 QRFDFHRIRSRVIADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASFGTD 229 Query: 234 KIISSYIDLIHIPRQEYALQ 253 + + + Q + + Sbjct: 230 ITVQAVTQAAGLAGQSHLFE 249 >gi|296506517|ref|YP_003667751.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis BMB171] gi|296327104|gb|ADH10031.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis BMB171] Length = 536 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 47/338 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G I+ + ++ HA L G +G GK T+ V Sbjct: 7 LYRAYRPNSFNDLVGQNHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKSVNCF 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 67 TPLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 112 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 172 CQQFEFRNIPLQAMIDRLKFISNDQGIQITDEALHLISQLAEGGLRNALSIM----DQVI 227 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 228 AYATNNVTIEHVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADF------ 281 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L+ ++NL ++ +F + Sbjct: 282 ------------FLSDLIGYYRDLMIFNLSQKTDMFKV 307 >gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] Length = 601 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 19 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 78 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P DPC + D + + + V++IR Sbjct: 79 VGEDGQGGPT----TDPCGKCEHCTAIMEGRHVDVMEMDAASRT---------GVNDIRE 125 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 126 IIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 185 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 186 LSRCQRFDLRRIEPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLL----D 241 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D L++ IL+ +A + Sbjct: 242 QAISHGAGETT----------ADQVRAMLGLADRGRVLD-LMDMILRGDAAAALTELSAQ 290 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 291 YAEGADPLA-VLRDLAEITH 309 >gi|212696577|ref|ZP_03304705.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM 7454] gi|212676433|gb|EEB36040.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM 7454] Length = 582 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L SG++ HA LF GE+G GK T +A + Sbjct: 7 LYREYRPQKFSDVLGQERVVNVLKNQVKSGQISHAYLFAGERGCGKTTCAKIFAKAINCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P +C K + + D + + + N +D+IR ++ Sbjct: 67 NPIDSSPCGICEN------CKSIEDESTMDVVEMDAASNR---------RIDDIRNLKET 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I TI SR Sbjct: 112 VVYPPNNLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRV 171 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + + L I +D + A G++ A+ IL D+++S Sbjct: 172 QKFEFNKIGRDDIIKQIDIILNDRNISMEYEAKDLIVKKAKGAMRDALSIL----DQVLS 227 Query: 238 SYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF 277 D + E L + ++ D ++S +QK + + L + Sbjct: 228 IDKDNFLLQDVENILGVVDFYSLDKLVDNIISYNQKDSLEILFKL 272 >gi|229125265|ref|ZP_04254367.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] gi|228658191|gb|EEL13929.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] Length = 541 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 29/292 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P L G + I+ + ++ HA L G +G GK T+ V Sbjct: 12 LYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGKGVNCL 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + P + C + ++ D L + N V+EIR+IR Sbjct: 72 APLSNGEPCQKCAN------CSDINNNKFADILEFDAASNN---------GVEEIRQIRD 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + L TG ++V +ID V ++ +A NALLK+LEEPP V+FIL + + TI SR Sbjct: 117 QVHLAPVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR 176 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C +F ++ + L+ + I D + A G + A+ I+ D++I Sbjct: 177 CQQFEFRNIPLQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIM----DQVI 232 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + + I + A+Q ++++ + +D D L + ++ Sbjct: 233 AYATNNVTIEHVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQA 284 >gi|296390101|ref|ZP_06879576.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa PAb1] Length = 453 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 117/303 (38%), Gaps = 37/303 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + S P C Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTPCGEC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 60 -----SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLDNVQYSPTRGRYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V F+L + + TI SRCL ++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPPER 165 Query: 194 LYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + + L + D + AA GS+ A+ + D+ I+ + Sbjct: 166 VVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAADVR 221 Query: 250 YAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKSAKAAALSGQL 295 L ++ + LL D + + + +L EI A++ L Sbjct: 222 AMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQAL 281 Query: 296 EEA 298 EA Sbjct: 282 PEA 284 >gi|322380101|ref|ZP_08054355.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5] gi|321147471|gb|EFX42117.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5] Length = 470 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 27/305 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + + L G E + LS R+ HA LF G +G GK + +A + Sbjct: 10 LALKYRPKHFKDLIGQESVSNTLSLALDHARLAHAYLFSGLRGSGKTSTARIFARALQCE 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N ++++R I Sbjct: 70 KGPSSIPCDSC------LNCLDALKDRHLDIIEIDGASNR---------RIEDVRNIIEQ 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ MID + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 115 TKYKPSLGRFKIFMIDEAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRT 174 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL--------H 229 F ++ + + L+ Q + S + + + GS+ + + Sbjct: 175 QHFHFKKIAPKAIVQRLQSILDQEGVSYEQSALEILARSGGGSLRDTLTLSDQAISYTNQ 234 Query: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 + + +S + +++ E + + + +++L K ++ I +L+E+ K A Sbjct: 235 HISAQGVSQMLGMVNTQILEDFFKAIVECKEDVLKDMLKALEEYEISIVLEEMGVFLKEA 294 Query: 290 ALSGQ 294 L G+ Sbjct: 295 VLQGR 299 >gi|254486633|ref|ZP_05099838.1| DNA polymerase III subunit delta [Roseobacter sp. GAI101] gi|214043502|gb|EEB84140.1| DNA polymerase III subunit delta [Roseobacter sp. GAI101] Length = 371 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 25/356 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ID A P RL G E E + SG++HH L G +G+GKATL +R A +L Sbjct: 11 IDGARHPRDTPRLIGQEPAEAAFLDAFNSGKLHHGWLLTGPRGVGKATLAWRLARFLLAT 70 Query: 62 PDFSKA------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD P + DP P +++A+ ++ S++ KT + R I VD+I Sbjct: 71 PDPEGGGMFAPEPPTSLDVDPDHPVARRIAAGGEGALKAVTRSVDEKTKRLRKQIVVDDI 130 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R++ F ++A G RV+++D D MN NAANALLK LEEPP + + +LISH +L Sbjct: 131 RKLNGFFQMSAADGGRRVVIVDDADLMNPNAANALLKMLEEPPARAIILLISHRPSGLLP 190 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TIRSRC +++ +L + + +AL Q + + + GSV A+ + ++ Sbjct: 191 TIRSRCRTLRLGTLDSDQMGQALAQSGVD-IQGDPAALAALSGGSVGGALGLSLMGGLQL 249 Query: 236 ISSYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDF-LIEFILKEICKS-------- 285 + + ++ +P+ + + A ++K+A F L + ++ + ++ Sbjct: 250 YAELVGILGTLPQLDRSRALALAEAAAARGAEEKLALLFTLTDLLMLRLARTGALGHPPQ 309 Query: 286 --------AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 A L+ + A++ + R NLD ++ L K Sbjct: 310 TQAAPNEHAILTRLAPTPAQGRIWAEVAQDIGARARHGMAVNLDPAALVLDTLFKL 365 >gi|312137857|ref|YP_004005193.1| DNA polymerase iii gamma subunit [Rhodococcus equi 103S] gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] Length = 723 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 119/352 (33%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + L + + V++ R +R Sbjct: 63 QGPTSTPCGECASC----IALGPGGAGNLDVIELDAASHG---------GVEDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++FI + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F L+ + + LE Q + D+ V A GS Sbjct: 170 HHYPFRLLAPSTMRGLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGE 229 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+ +L +I +D + + ++ D ++ A D L Sbjct: 230 EGVTYARALALLGVTDVALIDEAVDALAANDGAALFGTVDKVMDA-GHDPRRFAVDLLER 288 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + ++ AA G D + + + L R + H Sbjct: 289 LRDLILMRAVPDAAERG---LVDAPGDVLDRMREEAERIGPATLARYAELVH 337 >gi|117929223|ref|YP_873774.1| DNA polymerase III, subunits gamma and tau [Acidothermus cellulolyticus 11B] gi|117649686|gb|ABK53788.1| DNA polymerase III, subunits gamma and tau [Acidothermus cellulolyticus 11B] Length = 637 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 72/351 (20%), Positives = 126/351 (35%), Gaps = 36/351 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q R+HHA LF G +G GK + A + Sbjct: 5 LYRKYRPATFAEVIGQEHVTEPLRQALRHNRVHHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P +C + +A D + + + + VD+ R +R Sbjct: 65 QGPTPDPCGVCQS------CRDLAPSGPGNVDVIEIDAASHG---------GVDDARDLR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V +ID + NALLK +EEPP + F+ + +L TI+S Sbjct: 110 ERSFYAPAVSRFKVYIIDEAHMVTAAGFNALLKLVEEPPPHLKFVFATTEPDKVLPTIKS 169 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + L + L EQ K+ + V A GSV A+ IL D++ Sbjct: 170 RTHHYPFRLVPPAVLRQHLAHICEQEKVAIEPGALNLVVRAGAGSVRDALSIL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + + A LL D IE + + A + ++ + Sbjct: 226 IA----------GAGSEGVTHRYAAALLGYTDAALLDEAIEGLARGDG-PAVFSVVTSVI 274 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYA 346 + + +++R+ + + LL + D R A Sbjct: 275 DAGHDPRRFAEDILQRLRDLIVVDAVPDAPARGLLDVPEDAMDRMRRQAAA 325 >gi|116669121|ref|YP_830054.1| DNA polymerase III subunits gamma and tau [Arthrobacter sp. FB24] gi|116609230|gb|ABK01954.1| DNA polymerase III, subunits gamma and tau [Arthrobacter sp. FB24] Length = 1078 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 120/354 (33%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L R++HA LF G +G GK T A + Sbjct: 7 LYRRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 67 EGPTDTPCGKC--PSCIELAR--GGSGSLDVIEIDAASHG---------GVDDARDLRER 113 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 114 ATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRT 173 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L LE Q + V A GSV ++ Sbjct: 174 HHYPFRLVPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGP 233 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L Y ++ ++ + + + ++ D + + L+E Sbjct: 234 TGLDYELAVALLGYTHASLLDDVVEAVAASDAATVFRAVDRVIQT--GHDPRRFVEDLLE 291 Query: 277 FILKEICKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I A + L ADQIA+ L + H L R + + Sbjct: 292 RFRDLIIVQAMPESAQSILRGMPADQIAR----LQNQAHNLGAAELSRAADVTN 341 >gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] Length = 577 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 119/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + + R+ HA + G +G+GK T A + Sbjct: 11 VLARKYRPATFADLIGQEAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + +A D + + + V +I Sbjct: 71 IGPDGKGGPTTEPCGVCEP------CRAIAEGRHVDVMEMDAASRT---------GVGDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + + A + +++ +ID V ++ A NALLK+LEEPP V FI + + Sbjct: 116 REVIDSVHYRAASARYKIYIIDEVHMLSNAAFNALLKTLEEPPAHVKFIFATTEIRKVPV 175 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L ++ + AA GSV A+ ++ Sbjct: 176 TVLSRCQRFDLKRIEPEVMLTHLARIAALEGASLAPDALALITRAAEGSVRDAMSLM--- 232 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ Q+ L D+ D + ++K A + Sbjct: 233 -DQAIAHGAGETS----------AAQVRAMLGLADRGRVLDLF-DLVMKGDAAGALSELS 280 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + + AD +A + L + H Sbjct: 281 AQYADGADPMA-VLRDLAEITH 301 >gi|303252503|ref|ZP_07338666.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648471|gb|EFL78664.1| DNA polymerase III subunits gamma and tau [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 679 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 51/351 (14%) Query: 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV 69 + G + + L GR+HHA LF G +G+GK ++ +A + + P Sbjct: 5 TFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAKGLNCETGITATPC 64 Query: 70 RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG 129 C K + D + + + K V++ R + + G Sbjct: 65 GECAN------CKAIEEGRFIDLIEIDAASRTK---------VEDTRELLDNVQYKPTVG 109 Query: 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 ++V +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRC+ +L Sbjct: 110 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRAL 169 Query: 190 SENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 + + LE Q I + + AA GS+ ++ + D+ I+ I + Sbjct: 170 DQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSL----TDQAIAVSNANISL 225 Query: 246 PRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 P + L + ++ L D + A + K I Sbjct: 226 PIVQKMLGLIDDHQPIELVTALAQADGEKAMAVIQSVAEKGI-----------------D 268 Query: 301 IAQIYFSLVKRVHAFSMYNLDR----RQMIFHLLSKARECNDLYFRDFYAI 347 +Q+ + + +H +M L + Q H L+K D+ F FY + Sbjct: 269 WSQLLSDIAQTLHQIAMLQLLKNNGQEQTQLHFLAKQIAPEDVQF--FYQL 317 >gi|115526801|ref|YP_783712.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris BisA53] gi|115520748|gb|ABJ08732.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris BisA53] Length = 629 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 115/317 (36%), Gaps = 29/317 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G + + + LS + +GR+ A + G +G+GK T A + Sbjct: 41 VLARKYRPNSFEHLIGQDAMVRTLSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 100 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + D L + + + VD++R+I Sbjct: 101 ETADGSVKAPTIHMPGPGVHCQAIMEGRHMDVLEMDAASHT---------GVDDVRQIND 151 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 152 SVRYAPAGARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 211 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L + + + AA GSV ++ +L D+ I Sbjct: 212 CQRFDLRRVEADVLMSHLGSIAAKENVEIEPEALGIIARAAEGSVRDSLSLL----DQAI 267 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + ++ + Q+ L D+ D +I A A Q + Sbjct: 268 AHAAGIV----------RADQVRQMLGLADRTRVIDLFGHLASGDIA--AAFAEFRDQYD 315 Query: 297 EADQIAQIYFSLVKRVH 313 + L + V+ Sbjct: 316 TGADPVVVLSDLAEFVN 332 >gi|291303584|ref|YP_003514862.1| DNA polymerase III subunits gamma and tau [Stackebrandtia nassauensis DSM 44728] gi|290572804|gb|ADD45769.1| DNA polymerase III, subunits gamma and tau [Stackebrandtia nassauensis DSM 44728] Length = 690 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 113/322 (35%), Gaps = 32/322 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L +GR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPQSFAEVIGQEHVTEPLISAISNGRLNHAYLFSGPRGCGKTSSARILARSLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 KGPTPTPCGEC--DSC--VGLSAGGGGSIDVIEIDAASHG---------GVDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP V+F+ + +L TIRSR Sbjct: 112 AVFAPVNSRYKIYVIDEAHMVSSAGFNALLKLVEEPPDYVMFVFATTEPEKVLPTIRSRT 171 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + K + I +S V A GS + +L D++I+ Sbjct: 172 HHYPFRLIPPAAMRGLCEKLCHEEGITVEESVYPLVIRAGAGSARDTLSVL----DQLIA 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 D A LL D + E + A + LE Sbjct: 228 GAGDE----------GVTYARAMALLGVTDGSLLDEICEALSAMDGAGAIGV-IDKALEA 276 Query: 298 ADQIAQIYFSLVKRVHAFSMYN 319 + L++R+ + N Sbjct: 277 GHDPRRFAADLLERLRDLIVLN 298 >gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424] gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 7424] Length = 730 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 88/226 (38%), Gaps = 21/226 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G E I + L + R+ A LF G +G GK + A + + Sbjct: 9 KYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCLSSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C K +A + D + + + N VD IR I Sbjct: 69 KPTPIPCGTC------EVCKAIARSSALDIIEIDAASNT---------GVDNIREIIERA 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARA 224 + + ++ K L+ + I D V A G + A Sbjct: 174 RFDYRRIPLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDA 219 >gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] Length = 582 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 113/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + N G IR I Sbjct: 69 IGPDGNGGPTTE--PCGVCEHCVAIMEGRHVDVMEMDAASNTGVGN---------IREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ S Sbjct: 118 DSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + ++ D + AA GS A +L D+ Sbjct: 178 RCQRFDLRRIEPEVMIALMRKIATAEGAEIADDALALITRAAEGSARDATSLL----DQA 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS + L D+ D + IL+ A + Sbjct: 234 ISHGAGETTAVQVRAMLGLA----------DRGRVLDLF-DMILRGDAAGALDELGNQYS 282 Query: 296 EEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 DGADPMA-VLRDLAEITH 299 >gi|313817549|gb|EFS55263.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA2] Length = 633 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 101 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 160 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 161 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 207 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 208 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 267 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 268 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 323 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 324 GAADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 383 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 384 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 434 >gi|111220099|ref|YP_710893.1| DNA polymerase III subunits gamma and tau [Frankia alni ACN14a] gi|111147631|emb|CAJ59286.1| DNA polymerase III subunit gamma (partial match) [Frankia alni ACN14a] Length = 1016 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 126/351 (35%), Gaps = 41/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P ++ G E + L + +GR+HHA LF G +G GK + A + Sbjct: 5 LYNRYRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAASLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ + + A D + + + VD+ R +R Sbjct: 65 QGPTPEPCGVCDE------CVGIRTGASMDVTEIDAASHG---------LVDDARDLRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D + A NALLK +EEPP + F+ + ++ TIRSR Sbjct: 110 AFFAPASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + L L EQ + + V A GSV ++ +L D Sbjct: 170 HHYAFRLVPPGVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGADD 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIA-----------DELLSQD---QKIAFDFLIEF 277 D + + L+ + + + +A D+++S ++ A D L Sbjct: 230 DGLHYDRAVALLGMTDGVLLDETVDALARHDGAALFTVVDKVVSAGHDPRRFATDLLDRL 289 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G LE + + A L R + H Sbjct: 290 RDLIIMAAVPDADARGLLESFSP--DQIDRMRAQAAAVGPAELSRTADVLH 338 >gi|326317366|ref|YP_004235038.1| DNA polymerase III subunits gamma and tau [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374202|gb|ADX46471.1| DNA polymerase III, subunits gamma and tau [Acidovorax avenae subsp. avenae ATCC 19860] Length = 673 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 72/374 (19%), Positives = 137/374 (36%), Gaps = 49/374 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALIQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NPD-----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + + P +C + + + D+ L + N VDE+ Sbjct: 65 QGEDGQGGITATPCGVCQA------CRDIDAGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRVLAQESVPAEPQALRLLARAARGSMRDALSL---- 225 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDF------------- 273 D+ I+ + L + ++ D L S D + + Sbjct: 226 TDQAIAFGSGQLQEAGVRQMLGSVDRSYVFRLIDALASGDGRTVVETSESLRMHGLSAAS 285 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 +E + + + A A+ + D + + D Q+++ + Sbjct: 286 TLEEMSAVLQRMAVFQAVPQMADAVDPADPEASEIARLAGTLPA---DETQLLYSICLHG 342 Query: 334 RECNDLYFRDFYAI 347 R L ++ A+ Sbjct: 343 RTELGLAPDEYAAL 356 >gi|86150298|ref|ZP_01068524.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839123|gb|EAQ56386.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni CF93-6] Length = 509 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 141/352 (40%), Gaps = 46/352 (13%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + I I + L QK++ +L++D++ F +L E Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEEL--------------- 270 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSM-YNLDRRQMIFHLLSKARE--CNDLYF 341 E + I ++ F L + A S +++ + F +LSKA+ CND F Sbjct: 271 QDYEASSVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCNDDGF 322 >gi|163738562|ref|ZP_02145976.1| DNA-directed DNA polymerase [Phaeobacter gallaeciensis BS107] gi|161387890|gb|EDQ12245.1| DNA-directed DNA polymerase [Phaeobacter gallaeciensis BS107] Length = 373 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 29/363 (7%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 A P LFG E+ + S R+HH L G QG+GKATL +R A +L P Sbjct: 14 AGAPHPRETLHLFGQAQAEQDFLTAFNSDRLHHGWLLTGPQGVGKATLAWRIAAFLLSQP 73 Query: 63 DFSKA-------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 A P + P + ++ + A ++ S+N K GK R I VD+I Sbjct: 74 PAEDAGLFGAPPPATSLDIGMDHPVMHRIQALAEPGLASITRSVNDK-GKLRDQIVVDDI 132 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + F L+A G RV+++D D MN +AANALLK LEEPP + +L+SH +L Sbjct: 133 RALNKFFGLSATDGGRRVVIVDAADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLP 192 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TIRSRC ++F LS ++ AL Q + + + A GSV A+++L+ + Sbjct: 193 TIRSRCRLLRFAPLSPEDMQAALTQAGAEL-PRQAEHLAALANGSVGAALRLLNLGGLQA 251 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA----- 290 S + L+ Q+ +A++ ++ F+ L+ I + + A+ A Sbjct: 252 YSDVVRLLDSM-PRLDRQRAMTLAEQAAARGGADKFELLLTLIDTALARLARTGATGMAP 310 Query: 291 --------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 LS ++A A + + R+ NLD ++ + K ++ Sbjct: 311 QPEAAPQEAAVLSRLSPTPQKARAWADLAAQVTARMRHGQAVNLDPAALVLDTVFKMQDT 370 Query: 337 NDL 339 Sbjct: 371 AAR 373 >gi|149186799|ref|ZP_01865109.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21] gi|148829466|gb|EDL47907.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21] Length = 612 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 36/326 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+ HA L G +G+GK + A + Sbjct: 80 VLARKYRPQTFAELIGQDAMVRTLANAIARDRLAHAFLMTGVRGVGKTSTARLIAKALNC 139 Query: 61 -NPDFSKAP----VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD P +C P +A D + + + + VD++ Sbjct: 140 IGPDGEGGPTISPCGVCEP------CTAIAEGRHIDVIEMDAASHT---------GVDDV 184 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + Sbjct: 185 REIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPV 244 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SR + L ++ + D AA GSV + IL Sbjct: 245 TVLSRTQRFDLRRIPVELLEAHFAEICRKEGVEAEDEALHIAANAAEGSVRDGLSIL--- 301 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ ++ M +AD + L IL K+A AA Sbjct: 302 -DQAIAHADMDTGGKVTADRVRDMLGLADRGAQRR-------LFAHILDGDAKAALAAVD 353 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSM 317 + +A + SL+ H ++ Sbjct: 354 DQYALGVEPLA-LMRSLMDLTHRIAL 378 >gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] Length = 608 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 117/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 15 VLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFVMTGIRGTGKTTTARIIAKGMNC 74 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + V +IR I Sbjct: 75 IGPDGTGQPTTE--PCGVCEHCTAIMEGRHVDVMEMDAASRT---------GVGDIREII 123 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 124 DSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 183 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + ++ + + AA GSV A +L D+ Sbjct: 184 RCQRYDLRRIEPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLL----DQA 239 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS Q+ L D+ D L++ +L+ A + Sbjct: 240 ISHGAGETT----------ADQVRAMLGLADRGRVLD-LMDMVLRGDAAGALTELSAQYA 288 Query: 296 EEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 289 EGADPLA-VLRDLAEITH 305 >gi|154147958|ref|YP_001406806.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC BAA-381] gi|153803967|gb|ABS50974.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC BAA-381] Length = 526 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 135/353 (38%), Gaps = 33/353 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + I K LS S R+ HA LF G +G GK + +A ++ Sbjct: 4 LALKYRPKNFDELIGQDTIAKSLSHALDSKRLSHAYLFSGLRGSGKTSSARIFAKDLICE 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + C+ D + + + + K +D+IR + Sbjct: 64 KGPTSHACEECDN------CIMANEGRHIDIIEMDAASHRK---------IDDIRELIEQ 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID V + A+NALLK+LEEPP+ V FIL + + T+ SR Sbjct: 109 TKYAPSVARYKIFIIDEVHMLTTEASNALLKTLEEPPEYVKFILATTNPLKLPVTVLSRT 168 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----CD 233 +F ++ N + LE + I S + + + GS+ + +L + Sbjct: 169 QHFRFKPIATNLIMAHLEYILQNENIAYEQSAIEILARSGSGSLRDTLTLLDQAIIFSGE 228 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKSA 286 I S I + + ++ +I +++QD+ D + E I+ E+ + Sbjct: 229 NITQSKIAEMLGLLDPTKIDEILKI---IINQDRNALIDIIKEIENYAPETIIDELISNL 285 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDL 339 K+ L + + + +F ++ + D K E +L Sbjct: 286 KSKFLKRDTSFSLLMYERFFRILAIAKGMLSISNDNGYTFAMAFFKMMEAVNL 338 >gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola 23] gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola 23] Length = 601 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 5 VSARKYRPLSFDTVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 64 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C + + L + N +V+ I+ + Sbjct: 65 QHPTAEGEACNECES------CQSFNEQRSLNIFELDAASNN---------SVEHIKTLM 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 110 EQTRIPPQLGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 169 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ N L EQ I + + A G + A+ I Sbjct: 170 RCQIYDFERMTIRNTIDHLKHVAEQEGITYEEQALAVIAEKADGGMRDALSIFDQAA 226 >gi|39935843|ref|NP_948119.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris CGA009] gi|192291491|ref|YP_001992096.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris TIE-1] gi|39649697|emb|CAE28218.1| probable DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris CGA009] gi|192285240|gb|ACF01621.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris TIE-1] Length = 351 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 9/335 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P L+GH E+ L Y GR+ HA L G QGIGKATL +R A VL + + Sbjct: 19 HPRETTELYGHHAAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHREPQS 78 Query: 67 APVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V+ DP P + +A+ A L L S+N K G R VITVDE R F Sbjct: 79 DAVQSAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETISFFG 137 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N N+ANALLK +EEPPQ+ LF+L+S+A +L TI+SRC Sbjct: 138 ATAAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARVLPTIQSRCRK 197 Query: 184 IKFNSL-SENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L + + + A + + D + A+ GSVARA+ ++ + + L Sbjct: 198 LMLRPLATADVIAAAADAAGVERDDPQLGEAAAASEGSVARALMLMGGGALTLQQTTTAL 257 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +P + + + + D + D+ ++ + + + + + +L ++ Sbjct: 258 LDSLPNVDP--RALHALGDAIGGTDRAT-LAAFVDGVDRWVAARLRTPDPNAELPRLARL 314 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A+++ + + YNL+R+ ++F + E Sbjct: 315 AEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEA 349 >gi|328541815|ref|YP_004301924.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum SL003B-26A1] gi|326411567|gb|ADZ68630.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum SL003B-26A1] Length = 673 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 118/318 (37%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 40 VLARKYRPQTFDDLVGQEPMVQTLENAFATGRIAQAWMLTGVRGVGKTTTARILARGLNY 99 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + P + + + + D + + + + +++IR I Sbjct: 100 EIPGEADRPTVRLSREGTH--CRAIMEGRHVDVIEMDAASHT---------GINDIREIT 148 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 149 DAARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLS 208 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L L ++ I D + A GS ++ +L D+ Sbjct: 209 RCQRFDLRRIEQPKLVGLLRRISDAEGIDISDEALSLIARAGEGSARDSLSLL----DQA 264 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ I Q+ + L D+ D + + ++ + L+GQ Sbjct: 265 IAHGAGHI----------DAVQVREMLGLADRARVIDLFGHVMAGRVAEALEE--LAGQY 312 Query: 296 EEADQIAQIYFSLVKRVH 313 A + L H Sbjct: 313 ASGADPAVVLTDLADFTH 330 >gi|288928509|ref|ZP_06422356.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331343|gb|EFC69927.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 608 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 20/237 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + PV + G + L SG++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P C + ++ L + N +V+ I+ + Sbjct: 66 LTPTEMGEACNHCES------CQAFNDQRSYNIFELDAASNN---------SVENIKTLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+FIL + IL TI S Sbjct: 111 DQTRIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 RC F ++ + L E I + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPGIIDHLKRVAENEGIAYEEEALAVIAEKADGGMRDALSIFDQAA 227 >gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9515] gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9515] Length = 595 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 21/227 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 + + P L G E I L Q S ++ A LF G +G GK + +A + Sbjct: 10 QKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSC 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C KQ+A D + + + N VD IR I Sbjct: 70 EQPTANPCGKC------ELCKQIADGNALDIIEIDAASNT---------GVDNIREIIDG 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T W+V +ID ++ A+NALLK++EEPP++V+FIL + +++TI+SRC Sbjct: 115 ARFTPTQARWKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRC 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARA 224 F +S N ++ L ++ I D + + G + A Sbjct: 175 QKFDFKRISSNTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDA 221 >gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J2-064] Length = 551 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 123/313 (39%), Gaps = 37/313 (11%) Query: 25 SQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 + HA LF G +G GK + +A + P C K Sbjct: 1 KNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNEC------EICKGT 54 Query: 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 ++ D L + + N V+EIR IR + ++V +ID V ++ Sbjct: 55 TDGSIPDVLEIDAASNN---------GVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLST 105 Query: 145 NAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKA----LEQ 200 A NALLK+LEEPP+ V+FIL + + TI SR F ++ ++ LE+ Sbjct: 106 GAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEE 165 Query: 201 LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIAD 260 KI + V AA G + A+ +L D++IS + + + E AL+ +A Sbjct: 166 EKIPYDEKALMIVARAAEGGMRDALSLL----DQVISYGSEEVTV---EDALEITGSVAQ 218 Query: 261 ELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNL 320 LL++ AFD + + L+ L E ++ L+ +Y Sbjct: 219 NLLTKLVSAAFDG---------DAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQ- 268 Query: 321 DRRQMIFHLLSKA 333 + + L +A Sbjct: 269 -KAPNLEETLERA 280 >gi|237799328|ref|ZP_04587789.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022184|gb|EGI02241.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] Length = 384 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 120/302 (39%), Gaps = 37/302 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L S R+HHA LF G +G+GK T+ A + + P C Sbjct: 1 MVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 K++ D + + + K V++ R + + + G ++V Sbjct: 60 -----SVCKEIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQYAPSRGRFKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL +++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTPER 165 Query: 194 LYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + + L + D + AA GS+ A+ + D+ I+ + Sbjct: 166 VVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVMAADVR 221 Query: 250 YAL-----QKMQQIADELLSQDQKIAFD---FLIEF------ILKEICKSAKAAALSGQL 295 L ++ + LL D + + +L E +L EI A++ L Sbjct: 222 AMLGTLDHGQVFDVLTALLEGDARGVLEAVRYLAEQGPDWSGVLSEILNVLHRVAIAQAL 281 Query: 296 EE 297 E Sbjct: 282 PE 283 >gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. viciae 3841] gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae 3841] Length = 625 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 80 YKTSEIDKPTIDLRAP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ ++ Q A++ M +A D+ D + ++ A Q Sbjct: 245 IAHGAGVV----QAEAVRGMLGLA------DRARIVDLFQHIVKGDVA--AALGEFQNQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLTDLADFTH 310 >gi|302544190|ref|ZP_07296532.1| DNA polymerase III, subunits gamma and tau [Streptomyces hygroscopicus ATCC 53653] gi|302461808|gb|EFL24901.1| DNA polymerase III, subunits gamma and tau [Streptomyces himastatinicus ATCC 53653] Length = 851 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 123/351 (35%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 14 LYRRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP C C + D + + + + VD+ R +R Sbjct: 74 KGPTPAPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L + L + +I D V A GSV ++ +L D Sbjct: 181 HHYPFRLVPPGTLREYLGEVCGREEIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGASD 240 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 ++ S +D I ++ + ++ ++ D L Sbjct: 241 DGVTYAMATSLLGYTDGSLLDAIVDAFAATDGAAAFEVVNRVIEGGNDPRRFVADLLERL 300 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + + + F L R + + Sbjct: 301 RDLVILAAVPDAADKGLI---DAPADVVERMQAQASVFGGAELSRAADLVN 348 >gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] Length = 639 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 108/309 (34%), Gaps = 22/309 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 44 VLARKYRPKDFTDLIGQEPMVRTLTNAFSTGRIAQAWMLTGVRGVGKTTTARILARALNY 103 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + D + + + + +D+IR I Sbjct: 104 KTAEIDQP--SIDLTTPGEHCPAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 152 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 153 QVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITVLSR 212 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH----YDC 232 C + L Q I D + AA GSV + +L + Sbjct: 213 CQRFDLRRIETGALASHFSSVAAQEGIGIDDESLSMIARAAEGSVRDGLSLLDQAIAHGG 272 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 ++ + + ++ ++ L++ D A + S L+ Sbjct: 273 GQVDAQ---AVRAMLGLADRSRVVELFGNLMAGDVAAALTGFRDQYDSGAGPSVILTDLA 329 Query: 293 GQLEEADQI 301 ++ Sbjct: 330 DFTHLVTRL 338 >gi|57238032|ref|YP_179281.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni RM1221] gi|57166836|gb|AAW35615.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni RM1221] gi|315058589|gb|ADT72918.1| DNA polymerase III subunits gamma/ tau [Campylobacter jejuni subsp. jejuni S3] Length = 509 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L +K++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides KD131] gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides KD131] Length = 582 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 121/320 (37%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ HA + G +G+GK T A + Sbjct: 11 VLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + ++ D + + + V +IR Sbjct: 71 VGPDGTGGPT----TEPCGQCEPCRAISEGRHVDVMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L + + AA GSV A+ ++ D Sbjct: 178 LSRCQRFDLKRIEPEVMMAHLARVAGKEGAELTRDALALITRAAEGSVRDAMSLM----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ Q+ L D+ D + ++K +A A Sbjct: 234 QAIAHGAGETT----------ADQVRAMLGLADRGRVLDLF-DLVMKGEAAAALAELSGQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YADGADPMA-VLRDLAEITH 301 >gi|269129109|ref|YP_003302479.1| DNA polymerase III subunits gamma and tau [Thermomonospora curvata DSM 43183] gi|268314067|gb|ACZ00442.1| DNA polymerase III, subunits gamma and tau [Thermomonospora curvata DSM 43183] Length = 715 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 119/353 (33%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P L G E + + L Q +GR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPATFAELKGQEHVAEPLQQALRNGRINHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + +D+ R +R Sbjct: 65 QGPTPDPCGKCESC----VALGPGGSGHIDVIEIDAASHG---------GIDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP + F+ + ++ TIRSR Sbjct: 112 AFFAPVSARFKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F L L + +E+ + + V A GS + IL + Sbjct: 172 HHYPFRLLPPGTLRELVEEVLQSEGVPYEPAALPLVVRAGAGSARDTLSILDQLVAGADE 231 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 + + L+ + ++ D ++D F + I ++ Sbjct: 232 SGITYARAVSLLGYTDSA----LLNEVVDAFAARDGAAVFAAIDRVIESGQDPRRFATDL 287 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + + + EA D + ++ A L R + H Sbjct: 288 LERVRDLVILANVPEAGSTGLLDVPPDELEQMQRQASAMGAATLSRAADLLHA 340 >gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] Length = 581 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC + D + + + N +V++IR Sbjct: 70 IGPDGQGGPT----TDPCGKCEHCVAIMEGRHVDVMEMDAASNT---------SVNDIRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 177 LSRCQRFDLRRIEPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLL----D 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS + ++ M +AD D L E +++ +A + Sbjct: 233 QAISHGAGETTADQ----VRAMLGLADRGRVMD-------LFEMVMRGDAAAALTELSAQ 281 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 282 YADGADPLA-VLRDLAEITH 300 >gi|89898478|ref|YP_515588.1| DNA polymerase III subunits gamma and tau [Chlamydophila felis Fe/C-56] gi|89331850|dbj|BAE81443.1| DNA polymerase III gamma/tau [Chlamydophila felis Fe/C-56] Length = 445 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + G + + L R+ HA LF G +G GK TL +A + Sbjct: 8 VSSRKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIRGTGKTTLARIFAKALNC 67 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + P C K+++S D + + + + +++IR+I Sbjct: 68 TEPTANNEPCNRC------CICKEISSGTSLDVIEIDGASHR---------GIEDIRQIN 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + T +++ +ID V + + A N+LLK+LEEPP V F L + + I TI S Sbjct: 113 ETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL--KIMGWDSKRDF--VKIAAYGSVARAIKILHY 230 RC + + E + LE + I S+ + AA GS+ A + Y Sbjct: 173 RCQKMHLKRIPETMIVDKLESISQDISLETSREALLPIARAAQGSLRDAESLYDY 227 >gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris aestuarii DSM 271] gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris aestuarii DSM 271] Length = 617 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 62/276 (22%), Positives = 104/276 (37%), Gaps = 25/276 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + R+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 R +PC + + + N +VD+IR++ Sbjct: 65 QKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNN---------SVDDIRQL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI Sbjct: 116 RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATIS 175 Query: 179 SRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHY---- 230 SRC F + + L+ + + D + A GS+ A IL Sbjct: 176 SRCQRFNFKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAF 235 Query: 231 ----DCDKIIS--SYIDLIHIPRQEYALQKMQQIAD 260 D +K+I+ +L++ + +A+ Sbjct: 236 SVGNDAEKVIAYQGVAELLNYIDDDQFFDVSDAVAE 271 >gi|319793176|ref|YP_004154816.1| DNA polymerase iii, subunits gamma and tau [Variovorax paradoxus EPS] gi|315595639|gb|ADU36705.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus EPS] Length = 625 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 135/353 (38%), Gaps = 42/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA------CRDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY- 230 T+ SRCL ++ + + L+ ++ + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETILEHLTSVLQTEQVPAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQKMQQIAD----------ELLSQDQKIAFDFLIE 276 + + I + ++ + + + ++ +A+ E L +D A L E Sbjct: 230 IAFGNGELIETGVRQMLGSVDRGHVFKLIEALAEGDGKTVVDTSEALRRDGMSAASTLEE 289 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + A A+ + E AD S+ D Q+++ L Sbjct: 290 -MTSVLQAMAVLQAVPSRAESADSATDP--DAADTARLASLMPADETQLLYSL 339 >gi|315657727|ref|ZP_07910607.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491524|gb|EFU81135.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 798 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 111/293 (37%), Gaps = 35/293 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTATPCGTC--DSCRDLA--TGGSGSLDVIEIDAASHG---------GVDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L + L + D V A GSV ++ IL D++I+ Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL----DQLIA 227 Query: 238 ----------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + L+ + + D L+S A+ + I Sbjct: 228 GEAEPKLHYDRAVSLLGYTDS----GLLGGMVDALVSGSGADAYTVVDRMIQT 276 >gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. AS9601] gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. AS9601] Length = 584 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 17/273 (6%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P L G + I L Q + ++ A LF G +G GK + +A + Sbjct: 10 QKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C D C +Q+ + D + + + N V+ IR I Sbjct: 70 DQPTITPCCKCDLC----RQITEGSALDIIEIDAASNT---------GVENIREIIERAR 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 W+V +ID ++ A+NALLK++EEPP +V+FIL + +L+TI+SRC Sbjct: 117 FAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQK 176 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S +++++ L E+ I + + G + A +L Sbjct: 177 FDFRRISPSDIFQHLSEISEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGIT 236 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 I+ I E + ++ + L+ + + D Sbjct: 237 INGIQNLLGEVSESELTNLIKSLVENNPESLID 269 >gi|302870394|ref|YP_003839031.1| DNA polymerase III subunits gamma and tau [Micromonospora aurantiaca ATCC 27029] gi|302573253|gb|ADL49455.1| DNA polymerase III, subunits gamma and tau [Micromonospora aurantiaca ATCC 27029] Length = 970 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 123/339 (36%), Gaps = 43/339 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LSQ SGR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTPEPCGQC--DSCRGLAP--DGGGSIDVIEIDAASHG---------GVDDARELREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 112 AFFAPARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + LEQL + + V A GS+ ++ Sbjct: 172 HHYPFRLFPPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGP 231 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L +I D + A + ++A+ ++ A D L Sbjct: 232 EGVGYARAAALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEA-GHDSRRFASDLLER 290 Query: 277 F----ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 +L+++ +A + G ++ +++A L Sbjct: 291 LRDLIVLQQVPDAAARGLIDGPADQIERMAAQAQRLGPA 329 >gi|124021779|ref|YP_001016086.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9303] gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9303] Length = 604 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 88/232 (37%), Gaps = 21/232 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G + I LS S R+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLNCLNCD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C K +A+ D + + + N VD IR + Sbjct: 71 QPTPEPCGNC------ELCKSIAAGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 F + L K LE + I V A G + A +L Sbjct: 176 RFDFRRIPLEALEKHLEMIATREAIPINPEALHVVAQRAQGGLRDAESLLDQ 227 >gi|209964480|ref|YP_002297395.1| DNA polymerase III subunit delta' [Rhodospirillum centenum SW] gi|209957946|gb|ACI98582.1| ATPase i [Rhodospirillum centenum SW] Length = 372 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 159/363 (43%), Gaps = 32/363 (8%) Query: 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFS 65 F P N L GHE E+ L + + SGRMHHA L G GIGKATL FR A VL+ Sbjct: 12 FAPRRNPHLVGHEQAERLLLESWTSGRMHHAWLIGGPPGIGKATLAFRMARFVLKQGTGG 71 Query: 66 KAPVRMCNP--------DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P D P +++A+ D L + + + K +++ + VDE+RR Sbjct: 72 NDAALFGAPPPPVTLAVDTEHPVARRIAAGGHADLLTVQRTWDEKRKRFKRDLPVDEVRR 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I FL LT+ G WRV+++D D MN + NALLK LEEPP + L ++ + ++L TI Sbjct: 132 IAPFLRLTSAEGGWRVVVVDGADQMNLSGQNALLKILEEPPARSLILMAADNVGSLLPTI 191 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSR + L E + L + + + A GS+ RA+ + H + Sbjct: 192 RSRSRKLMLEPLPEATVVGLLGRYAPELDREAQTALARLAEGSIGRALDLHHAGGLDLYR 251 Query: 238 SYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + L+ +PR + + D++L + A+ + + ++ + + A+ A Sbjct: 252 QMLGLLETLPRLD--VLAAYGFIDKVLRGNDDAAWSAVTDLLVWWLGRLARTTARGQLPG 309 Query: 297 E---------------------ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 E D+ +++ + + NLDRRQ++ + L Sbjct: 310 EVVAGEGPLIARLVEPARRDGGLDRWVEVWENTTRLFARADSANLDRRQVLLNALLSIET 369 Query: 336 CND 338 Sbjct: 370 AAA 372 >gi|257059952|ref|YP_003137840.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8802] gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8802] Length = 650 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 101/274 (36%), Gaps = 21/274 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 + P L G E I L+ + R+ A LF G +G GK + A + Sbjct: 10 KYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCLAFS 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P C + +A + D + + + N VD IR I Sbjct: 70 DPTATPCGKC------EVCRAIARGSALDVIEIDAASNT---------GVDNIREIIERA 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 115 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ 174 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + + + L +Q I V A G + A +L + Sbjct: 175 RFDYRRIPLDAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTI 234 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 D + Q + + + S + ++ D Sbjct: 235 TTDKVWELVGAVPEQDLLLLLQAIASNNAELVID 268 >gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] Length = 625 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P + + D + + + + +D+IR I Sbjct: 80 YKTDTIDKPTIDLRIP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S +L + + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISAADLVGLFTAIAGKEGFEAEPQALSMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + A++ M +A D+ D I ++ + +GQ Sbjct: 245 IAHGGGRVE----AEAVRGMLGLA------DRARIVDLFQHIIKGDVAAALSE--FNGQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLNDLADFTH 310 >gi|326407768|gb|ADZ64839.1| DNA polymerase III subunit gamma/tau [Lactococcus lactis subsp. lactis CV56] Length = 552 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +L D + L + N VDEIR IR Sbjct: 66 NQVDGEPCNNCF------ICDSITKGSLDDVIELDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR Sbjct: 111 STYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F S++ ++ L ++ + D + AA G + A+ +L Sbjct: 171 QRFAFKSITTGDIRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQA 224 >gi|283956558|ref|ZP_06374037.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336] gi|283791807|gb|EFC30597.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336] Length = 510 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQTLIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFTYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|315503329|ref|YP_004082216.1| DNA polymerase iii, subunits gamma and tau [Micromonospora sp. L5] gi|315409948|gb|ADU08065.1| DNA polymerase III, subunits gamma and tau [Micromonospora sp. L5] Length = 970 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 123/339 (36%), Gaps = 43/339 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LSQ SGR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTPEPCGQC--DSCRGLAP--DGGGSIDVIEIDAASHG---------GVDDARELREK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID ++ NALLK +EEPP+ V FI + +L TI+SR Sbjct: 112 AFFAPARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + LEQL + + V A GS+ ++ Sbjct: 172 HHYPFRLFPPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGP 231 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L +I D + A + ++A+ ++ A D L Sbjct: 232 EGVGYARAAALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEA-GHDSRRFASDLLER 290 Query: 277 F----ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKR 311 +L+++ +A + G ++ +++A L Sbjct: 291 LRDLIVLQQVPDAAARGLIDGPADQIERMAAQAQRLGPA 329 >gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84] gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84] Length = 625 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 116/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 80 YRTPEIDRPTIDLREP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFTTIAGKEGIEAEPEALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ ++ A++ M +A D+ D I ++ A A + Q Sbjct: 245 IAHGSGVV----VADAVRSMLGLA------DRARIVDLFHHIIKGDVA--AALAEFNSQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLADLADFTH 310 >gi|83949597|ref|ZP_00958330.1| DNA polymerase III subunit delta [Roseovarius nubinhibens ISM] gi|83837496|gb|EAP76792.1| DNA polymerase III subunit delta [Roseovarius nubinhibens ISM] Length = 371 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 161/365 (44%), Gaps = 32/365 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RL G + ++ + SGR+HH L G +G+GKATL ++ A +L Sbjct: 11 VEGAPHPRETARLIGQDAAQRAFLDAFTSGRLHHGWLITGPRGVGKATLAWQIARFLLAT 70 Query: 62 PDFSK--------APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 P P P P ++ + + F +++ +NP TG+ R +I + Sbjct: 71 PAPGADDGLFGAPPPPESLAIPPDHPVATRLLAGSEPGFYHITRRVNPDTGRLRPMIVAE 130 Query: 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 ++R + FL L+A G RV++ID D MN AANALLK LEEPP + +++SH + Sbjct: 131 DVRELNRFLQLSATEGGARVVLIDSADEMNVQAANALLKMLEEPPARTTILMVSHQPARL 190 Query: 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 L TIRSRC ++ +LS ++ +AL Q + + + A GSV A+++ + Sbjct: 191 LPTIRSRCRELRLGALSPEDMAEALTQAG--AETDRPEALAALAAGSVGEALRLGNLGGL 248 Query: 234 KIISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 I + I ++ +PR + A+ + + D LI + + A+ A+ Sbjct: 249 DIYAELIGILGSLPRLDRPRALRL--AEAAAQRGAEERLDLLITLFDTALSRLARTGAMG 306 Query: 293 GQL------EEADQIAQI-------------YFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 L +EA ++ + R NLD ++ + K Sbjct: 307 QALLPEAAPDEAATFLRLAPHAAAARAWASCAQEIGARARHGRAVNLDPAALVLDTVFKL 366 Query: 334 RECND 338 ++ Sbjct: 367 QDTAA 371 >gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] Length = 602 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 103/279 (36%), Gaps = 16/279 (5%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-CDKI 235 C + L + L ++ KI D+ + A GS ++ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAIAHGA 240 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 S D + ++ + + L+ D A Sbjct: 241 GSVTADAVRSMLGLADRARIIDLFEMLMRGDVAGALTEF 279 >gi|148377949|ref|YP_001256825.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae PG2] gi|148291995|emb|CAL59387.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae PG2] Length = 614 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 138/357 (38%), Gaps = 52/357 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A + Sbjct: 6 LYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFANLINCY 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N D ++C + + D + + + N VD IR +R Sbjct: 66 HNNDDYSKLCQICEENGSNTI----------DIIEMDAASNN---------GVDSIRELR 106 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V +++ A NALLK+LEEPP V+FI + I TI S Sbjct: 107 DKIQHLPSVGNYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILS 166 Query: 180 RCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F +S + + LEQ I ++ A GS+ A+ I+ D+ Sbjct: 167 RVQRFNFRRMSNDTLVKQIKSILEQEGIKYDAEALPYIARLAVGSMRDALSII----DQA 222 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + I Y+ + +I + L + + A L + I Sbjct: 223 NAYGNGYIKFSDVMYSFGITSNDNLIKIINSLYNGKSEEALMLLQDLKNGGI-------- 274 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 Q+ SL+ F +Y + +F +L+ + N L F YA+ Sbjct: 275 ---------DPKQLVESLLSIFKDFIIYEKTYKDSLFEILT-LDQFNTLEFDLRYAV 321 >gi|53804576|ref|YP_113790.1| DNA polymerase III, gamma and tau subunits, programmed frameshift [Methylococcus capsulatus str. Bath] gi|53758337|gb|AAU92628.1| DNA polymerase III, gamma and tau subunits [Methylococcus capsulatus str. Bath] Length = 547 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 29/326 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + K L+ +GRMHHA LF G +G+GK TL A + Sbjct: 6 LARKWRPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLARILAKALNCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C +++ D + + + K V++ R + Sbjct: 66 DRQGANPCGRC------LICREVDEGRFIDLIEVDAASRTK---------VEDTRDLLDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N G ++V +ID V ++ ++ NALLK+LEEPP V F+L + I T+ SRC Sbjct: 111 VQYAPNQGRYKVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 L L+ + + Q+ I + + AA GS+ + +L Sbjct: 171 LQFNLKRLTPEQIRAQMAQILASESIDFEPAATKALARAAQGSMRDGLSLLDQAIAHCGG 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQI----ADELLSQDQKIA-FDFLIEFILKEICKSAK 287 + ++ +E ++ + ADELL+ +A F + +++++ Sbjct: 231 RLTNTGVSAMLGTVSREPVYGALEALAESRADELLAVSATLAEFSPDYQDVVQQLLAILH 290 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVH 313 A++ +A + ++ Sbjct: 291 QIAIAQFAPDAIRQDDEAERVLTLAR 316 >gi|205355902|ref|ZP_03222671.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8421] gi|205346336|gb|EDZ32970.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8421] Length = 509 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L +K++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42] gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42] Length = 624 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 114/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D++R I Sbjct: 80 YKTAEIDKPTIDLRTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDVREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + Q A++ M +A D+ D + ++ + Q Sbjct: 245 IAHGAGAV----QAEAVRGMLGLA------DRARIVDLFQHIVKGDVAGAL--GEFQSQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLTDLADFTH 310 >gi|298345779|ref|YP_003718466.1| hypothetical protein HMPREF0573_10653 [Mobiluncus curtisii ATCC 43063] gi|298235840|gb|ADI66972.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 789 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 21/240 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTATPCGTC--DSCRDLA--TGGSGSLDVIEIDAASHG---------GVDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L + L + D V A GSV ++ IL D++I+ Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL----DQLIA 227 >gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] Length = 587 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P P + + D + + + V +IR I Sbjct: 71 IGPDGMGTPTTE--PCGVCEHCRAIMEGRHVDVMEMDAASRT---------GVGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++ A + +++ +ID V ++ NA NALLK+LEEPP V FI + + T+ S Sbjct: 120 ESVNYRAASARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L ++ D + AA GS A +L D+ Sbjct: 180 RCQRFDLRRIEPEVMIALLRRIADKESAQISDDALALITRAAEGSARDATSLL----DQA 235 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS Q+ L D+ D + IL+ A + + Sbjct: 236 ISHGAGETT----------ADQVRAMLGLADRGRVLDLF-DMILRGDAAGALSELSAQYA 284 Query: 296 EEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 285 EGADPLA-VLRDLAEITH 301 >gi|315607781|ref|ZP_07882774.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] gi|315250250|gb|EFU30246.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC 33574] Length = 615 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 26/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L SG++ HA LF G +G+GK T +A + Sbjct: 5 VSARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC 64 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 +P C K ++ L + N +V+ I+ + Sbjct: 65 EHPHDDGEACNECES------CKAFNEQRSYNIFELDAASNN---------SVENIKALM 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI S Sbjct: 110 EQTRIPPQVGRYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILS 169 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---- 231 RC F ++ N L ++ I + + + A G + A+ I Sbjct: 170 RCQIYDFERMTVPNTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFC 229 Query: 232 -CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + I+ +++ + KM +A + D + + ++E Sbjct: 230 QGDITYAKVIEDLNVLDVDNYF-KMIDLALQNKVSDLMVLLNGVLE 274 >gi|121594691|ref|YP_986587.1| DNA polymerase III subunits gamma and tau [Acidovorax sp. JS42] gi|120606771|gb|ABM42511.1| DNA polymerase III, subunits gamma and tau [Acidovorax sp. JS42] Length = 679 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 68/370 (18%), Positives = 132/370 (35%), Gaps = 41/370 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACTDIDSGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + + L + + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRVLAAENVPAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------- 277 + + ++ + + + ++ D L D + + Sbjct: 230 IAFGSGQLQEA---AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADTLRINGLSAAST 286 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 + + A L + A + + + D Q+++ + R Sbjct: 287 LEDMSAVLQRMAVLQAVPQMAAAVDASDPEAAEVARLSAALPADETQLLYSICLHGRADL 346 Query: 338 DLYFRDFYAI 347 L ++ A+ Sbjct: 347 GLAPDEYAAL 356 >gi|158318299|ref|YP_001510807.1| DNA polymerase III subunits gamma and tau [Frankia sp. EAN1pec] gi|158113704|gb|ABW15901.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EAN1pec] Length = 855 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 128/351 (36%), Gaps = 39/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P ++ G E + + L SGR+HHA LF G +G GK + A + Sbjct: 5 LYNRYRPATFAQVVGQEHVTEALGHALRSGRLHHAYLFSGPRGCGKTSSARILAASLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ + + + D + + + VD+ R +R Sbjct: 65 KGPTPEPCGVCDQ------CVSIRTGSSMDVTEIDAASHG---------LVDDARDLRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 110 AFFAPASARFKVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRT 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------D 231 F + L K LE Q ++ S V A GSV ++ +L D Sbjct: 170 HHYAFRLVPPGVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVLDQLLAGAGD 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQ-------------DQKIAFDFLIEFI 278 + L+ + + + +A+ + D + L++ + Sbjct: 230 GGLSYERAVALLGMTDGILLDETVDALAERDGAALFTVVDSVVSSGHDPRRFATDLLDRL 289 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 I +A A+ L EA Q+ + + L R + H Sbjct: 290 RDLIVVAAVPDAVERGLLEAFSTDQV-DRMRAQAGRIGPVELSRTADVLHA 339 >gi|327398754|ref|YP_004339623.1| DNA polymerase III subunits gamma and tau [Hippea maritima DSM 10411] gi|327181383|gb|AEA33564.1| DNA polymerase III, subunits gamma and tau [Hippea maritima DSM 10411] Length = 417 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 45/364 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G L + ++HHA+L G G GK +L A + Sbjct: 4 VLARKYRPSKLSEVIGQPVATTILKNAIETEKLHHAILLAGPMGTGKTSLARIIAKSLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C K +A D + + + N K ++ R I Sbjct: 64 QNGPTTEPCGEC------EACKAIALGKDVDVIEIDGASNRK---------IENARNIIE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V +ID + A NA+LK++EEPP+ V FI + A I TI SR Sbjct: 109 SVKYPPLKRRFKVYIIDEIHMFTLEAFNAMLKTIEEPPEYVKFIFATTAIEKIPETILSR 168 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY------ 230 C + N + +N + K L+ Q I + + + A+ GS+ A L Sbjct: 169 CQILTLNRIPKNEIEKKLKYIASQENIKIDNEAIELISYASTGSLRVAEGFLDRCIAFKP 228 Query: 231 ---------------DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 +++SY++ I + + AL ++ + + + S Q + Sbjct: 229 TDTITKEDVSVVVGIPTKDVVNSYVEFIIQNKAKEALDIIKNL-NTISSNLQTFTKQVIE 287 Query: 276 EFILKEICKSAKAAALS---GQLEEADQIAQIYFSLVKRVHAFSMYN-LDRRQMIFHLLS 331 I K++ K+ K A ++ L++ Q + +L+ H N L+ +I LS Sbjct: 288 NIIEKDLSKTQKTALINIYYNALKDIKQKIEPTDALIVATHKAIATNDLESIDIIIEKLS 347 Query: 332 KARE 335 K Sbjct: 348 KTNS 351 >gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC 25840] gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A [Brucella ovis ATCC 25840] Length = 602 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFERGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + D + A++ M +A D+ D + ++ Sbjct: 237 AHGADSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|322690330|ref|YP_004219900.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. longum JCM 1217] gi|320455186|dbj|BAJ65808.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. longum JCM 1217] Length = 970 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|317483358|ref|ZP_07942350.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|316915175|gb|EFV36605.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] Length = 966 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|312133496|ref|YP_004000835.1| dnax2 [Bifidobacterium longum subsp. longum BBMN68] gi|311772738|gb|ADQ02226.1| DnaX2 [Bifidobacterium longum subsp. longum BBMN68] Length = 948 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|304390521|ref|ZP_07372474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326277|gb|EFL93522.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 798 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 27/289 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTATPCGTC--DSCRDLA--TGGSGSLDVIEIDAASHG---------GVDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L + L + D V A GSV ++ IL D++I+ Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL----DQLIA 227 Query: 238 -SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILK 280 +H R L + + D L+S A+ + I Sbjct: 228 GEAEPKLHYDRAVSLLGYTDSGLLGGMVDALVSGSGADAYTVVDRMIQT 276 >gi|291517614|emb|CBK71230.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. longum F8] Length = 970 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|239622697|ref|ZP_04665728.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514694|gb|EEQ54561.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1008 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 43 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 102 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 103 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 147 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 148 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 207 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 208 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 263 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 264 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 316 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 317 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 361 >gi|227545629|ref|ZP_03975678.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213745|gb|EEI81584.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 940 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|23465090|ref|NP_695693.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum NCC2705] gi|23325703|gb|AAN24329.1| DNA polymerase III subunit gamma/tau [Bifidobacterium longum NCC2705] Length = 970 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|46190545|ref|ZP_00121363.2| COG2812: DNA polymerase III, gamma/tau subunits [Bifidobacterium longum DJO10A] gi|189440151|ref|YP_001955232.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum DJO10A] gi|189428586|gb|ACD98734.1| DNA polymerase III gamma/tau subunit [Bifidobacterium longum DJO10A] Length = 960 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|328883870|emb|CCA57109.1| DNA polymerase III subunits gamma and tau [Streptomyces venezuelae ATCC 10712] Length = 795 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 81 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 140 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 141 QGPTPTPCGECQS--CRDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 187 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 188 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 247 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L L + I D V A GSV Sbjct: 248 HHYPFRLVPPGTLRDYLGEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAA 307 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S ++ A + + ++ + + ++ D L Sbjct: 308 DGVTYAMATSLLGYTDGSLLDSVVEAFAAGDGAAAFEVVDRVIEG-GNDPRRFVADLLER 366 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D + + + F L R + + Sbjct: 367 LRDLVILAAVPDAAEKGLI---DAPVDVIERMQAQASVFGAAELSRAADLVN 415 >gi|183222800|ref|YP_001840796.1| DNA polymerase III subunit gamma [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781222|gb|ABZ99520.1| DNA polymerase III gamma subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 497 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 71/366 (19%), Positives = 126/366 (34%), Gaps = 53/366 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + + L + S ++ HA +F G +G+GK T+ A + Sbjct: 12 VLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRLNC 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C ++ +D + + N VD IR +R Sbjct: 72 ERPDGVEPCNECTS------CLEITKGNSNDVFEIDAASNS---------GVDNIRELRE 116 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + A G +RV ++D V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 117 NVKFNAMGGKYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSR 176 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH------- 229 C F + L +E + + ++ GSV + + Sbjct: 177 CQDFHFRKVPVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTD 236 Query: 230 --------------YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + D LI + + ++ + + L Sbjct: 237 GNLTGVKLRKMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENLFQAGID---------LS 287 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF--HLLSKA 333 +FI I + L + + I + L K + LDR ++ + Sbjct: 288 KFIWDFIEFLNSLLLIKDNLADRESINIPHEDLQKLKQNYR--ELDREILVLLAERIFSI 345 Query: 334 RECNDL 339 E +L Sbjct: 346 HEKLNL 351 >gi|86738987|ref|YP_479387.1| DNA polymerase III subunits gamma and tau [Frankia sp. CcI3] gi|86565849|gb|ABD09658.1| DNA polymerase III, subunits gamma and tau [Frankia sp. CcI3] Length = 812 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 127/350 (36%), Gaps = 39/350 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P ++ G E + L + +GR+HHA LF G +G GK + A + Sbjct: 5 LYNRYRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAASLNCV 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ + + A D + + + VD+ R +R Sbjct: 65 QGPTPEPCGVCDE------CVGIRTGASMDVTEIDAASHG---------LVDDARDLRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D + A NALLK +EEPP + F+ + ++ TIRSR Sbjct: 110 AFFAPASARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + L + L + ++ + + A GSV ++ +L D Sbjct: 170 HHYAFRLVPPGVLREHLASVCAREGVVVDPAVLPLIVRAGAGSVRDSLSVLDQLLAGADD 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQ-------------DQKIAFDFLIEFI 278 D + + L+ + + + +AD + D + L++ Sbjct: 230 DGLRYDRAVALLGMTDGVLLDETVDALADRDGAALFTVVDKVVSAGHDPRRFATDLLDRF 289 Query: 279 LKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I +A A + L E+ QI + + L R + H Sbjct: 290 RDLIVMAAVPDADARGLLESFSPDQI-DRMRAQTTRMGPAELSRTADVLH 338 >gi|86151077|ref|ZP_01069293.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 260.94] gi|315124629|ref|YP_004066633.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842247|gb|EAQ59493.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 260.94] gi|315018351|gb|ADT66444.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 509 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQTLIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|315654368|ref|ZP_07907276.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333] gi|315491403|gb|EFU81020.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333] Length = 789 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 111/293 (37%), Gaps = 35/293 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFEDVIGQEHVTKALQAALANGRVNHAYLFSGPRGCGKTTSARILARCLNCV 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTATPCGTC--DSCRDLA--TGGSGSLDVIEIDAASHG---------GVDDTRELRDR 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID +++ NALLK +EEPP + FI + ++STIRSR Sbjct: 112 AAYAPARDRFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNPEKVISTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L + L + D V A GSV ++ IL D++I+ Sbjct: 172 HHYPFRLVAPEVLRDYMAGLCRSEGVTAEDGVLGLVVRAGGGSVRDSLSIL----DQLIA 227 Query: 238 ----------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + L+ + + D L+S A+ + I Sbjct: 228 GEAEPKLHYDRAVSLLGYTDS----GLLGGMVDALVSGSGADAYTVVDRMIQT 276 >gi|189912832|ref|YP_001964387.1| DNA polymerase III subunit gamma and tau [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777508|gb|ABZ95809.1| DNA polymerase III, gamma and tau subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 492 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 71/366 (19%), Positives = 126/366 (34%), Gaps = 53/366 (14%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + + L + S ++ HA +F G +G+GK T+ A + Sbjct: 7 VLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C ++ +D + + N VD IR +R Sbjct: 67 ERPDGVEPCNECTS------CLEITKGNSNDVFEIDAASNS---------GVDNIRELRE 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + A G +RV ++D V ++ A NALLK+LEEPP V+FIL + I TI SR Sbjct: 112 NVKFNAMGGKYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSR 171 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILH------- 229 C F + L +E + + ++ GSV + + Sbjct: 172 CQDFHFRKVPVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTD 231 Query: 230 --------------YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + D LI + + ++ + + L Sbjct: 232 GNLTGVKLRKMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENLFQAGID---------LS 282 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF--HLLSKA 333 +FI I + L + + I + L K + LDR ++ + Sbjct: 283 KFIWDFIEFLNSLLLIKDNLADRESINIPHEDLQKLKQNYR--ELDREILVLLAERIFSI 340 Query: 334 RECNDL 339 E +L Sbjct: 341 HEKLNL 346 >gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] Length = 582 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 113/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + N G IR I Sbjct: 69 IGPDGNGGPTTE--PCGVCEHCVAIMEGRHVDVMEMDAASNTGVGN---------IREII 117 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ S Sbjct: 118 DSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + ++ + + AA GS A +L D+ Sbjct: 178 RCQRFDLRRIEPEVMIALMRKIATAEGAEIAEDALALITRAAEGSARDATSLL----DQA 233 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS + L D+ D + IL+ A + Sbjct: 234 ISHGAGETTAVQVRAMLGLA----------DRGRVLDLF-DMILRGDAAGALDELGNQYS 282 Query: 296 EEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 DGADPMA-VLRDLAEITH 299 >gi|317177452|dbj|BAJ55241.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F16] Length = 578 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 139/337 (41%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C P + ++ D + + + N +D++R + Sbjct: 63 EEGPKSVPCDTC------PQCQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYRPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] Length = 584 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 113/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + N V IR I Sbjct: 71 IGPDGTSGPTTE--PCGTCEHCTAIMEGRHVDVMEMDAASNT---------GVANIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ S Sbjct: 120 DSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + + ++ + AA GS A +L D+ Sbjct: 180 RCQRFDLRRIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLL----DQA 235 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS Q+ L D+ D + IL+ A + Sbjct: 236 ISHGAGETT----------AAQVRAMLGLADRGRVLDLF-DMILRGDTAGALTELSAQYA 284 Query: 296 EEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 285 EGADPMA-VLRDLAEITH 301 >gi|305431808|ref|ZP_07400975.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli JV20] gi|304444892|gb|EFM37538.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli JV20] Length = 518 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 130/328 (39%), Gaps = 35/328 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ + Sbjct: 5 LAIKYRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCD 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 NGPSDTPCGTCKQ------CLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F + +N + L+++ + + FV + GS+ + +L Sbjct: 170 QHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQN 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 D S D++ K+++ +L++++ FDFL E ++ E+ Sbjct: 230 DISTSKITDMLGFLDPA----KIKEFYHAILTKNKDRVFDFLEELKDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVH 313 K + + E + I + +F ++ R Sbjct: 286 LKESFFAKSSEFSTLIYERFFRILARAK 313 >gi|261839461|gb|ACX99226.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 52] Length = 568 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] Length = 617 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 73/362 (20%), Positives = 125/362 (34%), Gaps = 39/362 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL- 59 ++ R + P L G + L + SGR+ + G +G+GK T A + Sbjct: 26 VLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGYMLTGVRGVGKTTTARILARALNY 85 Query: 60 QNPDFSKAPVRMCNPD--PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 + PD + D K + D L + + N VD IR Sbjct: 86 EAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASNT---------GVDNIRE 136 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I T +V +ID V +++ A NALLK+LEEPP V FI + + T+ Sbjct: 137 IIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVPVTV 196 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY--- 230 SRC + + L +++ + AA GSV + IL Sbjct: 197 LSRCQRFDLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSILDQAIA 256 Query: 231 --DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF----------- 277 + +S D++ + + ++ +A+ + D A + Sbjct: 257 MGEGHVTAASVRDMLGLADR----GRIFDLAEAIFRGDLPAALNGFASLHRDGAEASEVI 312 Query: 278 --ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR-QMIFHLLSKAR 334 + + + A+ A+ + A+ L SM L R QM+ L + Sbjct: 313 GDLAEAVHAIARVKAVGEEPAGESLTAEEKKRLSDLASRLSMPYLSRAWQMLIKGLEEVG 372 Query: 335 EC 336 Sbjct: 373 RT 374 >gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] Length = 640 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 115/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 39 VLARKYRPKTFEDLVGQEPMVQTLENAFETGRIAQAWMLTGVRGVGKTTTARILARGLNY 98 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + P + K + D + + + + +++IR I Sbjct: 99 EVPGVADRPTVKLTQEGTH--CKAIMEGRHVDVIEMDAASHT---------GINDIREII 147 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 148 DAARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 207 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ L L ++ I D + A GS ++ +L D+ Sbjct: 208 RCQRFDLRRIDQSKLIGLLRRISDAEGIQISDEALMLIARAGEGSARDSLSLL----DQA 263 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 ++ I + + L D+ D + I + L Q Sbjct: 264 MAHGAGAIE----------AEDLRQMLGLADRARVIDLFGHIMAGRIEDAL--GELQAQY 311 Query: 296 EEADQIAQIYFSLVKRVH 313 E A + L H Sbjct: 312 EVGADPAIVLTDLADFTH 329 >gi|182418736|ref|ZP_02950009.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521] gi|237669676|ref|ZP_04529653.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377430|gb|EDT74986.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521] gi|237654750|gb|EEP52313.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str. BoNT E BL5262] Length = 555 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 124/348 (35%), Gaps = 36/348 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 6 LYREWRPKTFDDVVGQEHITTTLKNEIINDRIAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + N K R + Sbjct: 66 NLENGEPCNEC------EMCKKINEGLAIDVTELDAASNNGIDKIRDI---------IDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V ++D V ++ A NA LK+LEEPP+ V+FIL + + TI SRC Sbjct: 111 TKYPPQEAKYKVYIMDEVHMLSVGAVNAFLKTLEEPPKNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F ++ + L ++ I D D + G++ A+ IL + Sbjct: 171 QRFDFKRINHKEVSARLRRITEAQNIDCEDKSLDLIARVCDGAMRDALSILDQAIAMGEN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL------IEFILKEICKSA 286 + + + ++ + EY I + + + I D L ++ +K++ Sbjct: 231 EIDYNDLVSILGLVTNEYLFDITNSIIERNIEKSM-IIVDKLVYSGKDMQLFIKDLIAHF 289 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 + + +++ + + V R+ + ++ R Sbjct: 290 RNLLMIKVTTNPEEVLDMSLENITLVREQG-----RKIRVEEIMRDIR 332 >gi|15674176|ref|NP_268351.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis subsp. lactis Il1403] gi|12725258|gb|AAK06292.1|AE006448_10 DNA polymerase III, subunits beta and tau [Lactococcus lactis subsp. lactis Il1403] Length = 552 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +L D + L + N VDEIR IR Sbjct: 66 NQVDGEPCNNCF------ICDSITKGSLDDVIELDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR Sbjct: 111 STYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F S++ ++ L ++ + D + AA G + A+ +L Sbjct: 171 QRFAFKSITTGDIRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQA 224 >gi|300814178|ref|ZP_07094461.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511835|gb|EFK39052.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 577 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 119/284 (41%), Gaps = 28/284 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ ++ G + + L + + HA LF G +G GK + +A V Sbjct: 5 LYRKYRPLDFNQMIGQDALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C ++ D + + + N VD+IR ++ Sbjct: 65 HPIDGNPCNKCKS------CLSNLNNTSVDVVEMDAASNN---------GVDDIRDLKDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V +++ A NALLK LEEPP ++FIL + I +TI SR Sbjct: 110 VIYPPTFLKYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 +F+ +S N+ K L+ + D + + G++ A+ +L +D D Sbjct: 170 QKFEFSRVSLENIIKRLKYISQMEGKTLDDEVYLLIAKTSDGAMRDALSVLDQLLSFDSD 229 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 I I +D++ I E + ++ L++D + A + + Sbjct: 230 HISIEKAMDVLGISSSE----SLFELTSAYLNKDAERAISVIDD 269 >gi|296284716|ref|ZP_06862714.1| DNA polymerase III subunits gamma and tau [Citromicrobium bathyomarinum JL354] Length = 606 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 29/307 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P +L G E + + L+ R+ HA L G +G+GK + A + Sbjct: 64 VLARKYRPQTFSQLIGQEPMVQTLANAIRRDRLAHAFLMTGVRGVGKTSTARLIAKALNC 123 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC + +A D + + + + VD++R Sbjct: 124 IGPDGQGGPT----IDPCGVCEPCRAIAEGRHIDVIEMDAASHT---------GVDDVRE 170 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++RNA NALLK+LEEPP V F+ + + T+ Sbjct: 171 IIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTV 230 Query: 178 RSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SR + L + Q + + V AA GSV + IL D Sbjct: 231 LSRTQRFDLRRIPTERLGEHFAWVCGQEGVEAEPEALNLVAAAAEGSVRDGLSIL----D 286 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADE-----LLSQDQKIAFDFLIEFILKEICKSAKA 288 + I+ ++ M +AD LL + +++ + + + Sbjct: 287 QAIAHADLDSDAKVTAARVRDMLGLADAGAQRRLLGAILEGEPKTMLDAVADQYALGVEP 346 Query: 289 AALSGQL 295 AL L Sbjct: 347 LALMRSL 353 >gi|308063496|gb|ADO05383.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Sat464] Length = 571 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EKGPKAVPCDTCTQ------CQSTLNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDAYSI----LLIERFFKI 306 >gi|306821443|ref|ZP_07455047.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550518|gb|EFM38505.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 538 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 130/345 (37%), Gaps = 42/345 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + L ++ HA +F G +G GK + +A + Sbjct: 5 LYRKYRPDNFENIIGQSQVTDVLKNQIKEDKISHAYVFSGTRGTGKTSTAKVFAKSLNCQ 64 Query: 62 P-DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + C + D + + + N +VD IR ++ Sbjct: 65 NYSPESGPCNHC--ESCK--------NDYVDTIEIDAASNN---------SVDNIRALKD 105 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ A NALLK+LEEPP+ V+FIL + I +TI SR Sbjct: 106 NIIYRPSFGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSR 165 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 C +F +S ++ L E I D++ + G + AI L Sbjct: 166 CQKFEFKKVSIEDIKSRLKFIVENENIPYDVDAIDYIATMSDGGLRDAISTLDQVASLGR 225 Query: 233 --DKIISSYIDLIHIPRQEYALQKM--------QQIADELLSQ--DQKIAFDFLIEFILK 280 + + + I + + L+ + + +E+ S D K +I +L Sbjct: 226 ISMENLDFVTGMTSISKIDEYLKSVFTKNTFDSLKTVNEMTSDNVDIKKLPSQIISRLLD 285 Query: 281 EICKSAKAAALSGQLEEADQIAQIY--FSLVKRVHAFSMYNLDRR 323 I LE +++A + + + S D + Sbjct: 286 IIYLQNNVKTDVKMLESLEELASLSKDEDISTLIVEISEVESDMK 330 >gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. NATL1A] gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. NATL1A] Length = 565 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 25/302 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G + I+ L Q S R+ A +F G +G GK + +A + + Sbjct: 11 KYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCLKSE 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C K ++S D + + + N V+ IR + Sbjct: 71 KATTTPCGQC------ELCKGISSGNALDVIEIDAASNT---------GVENIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V +ID ++ A NALLK+LEEPP++V+FIL + +L TI SRC+ Sbjct: 116 RFAPAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCM 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F ++ ++L L ++ +I + + + G + A +L D ++ Sbjct: 176 RFDFRRIALHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLL--DQVSLLPP 233 Query: 239 YIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 I ++I A+ +++ +A L+++D + I K A ++ L Sbjct: 234 PITQLNIINLIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILR 293 Query: 297 EA 298 + Sbjct: 294 DL 295 >gi|332185894|ref|ZP_08387641.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17] gi|332014252|gb|EGI56310.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17] Length = 559 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 141/360 (39%), Gaps = 41/360 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L R+ HA L G +G+GK + A + Sbjct: 21 VLARKYRPQTFAALIGQDAMVQTLGNAIKRDRLAHAFLMTGVRGVGKTSTARLIAKALNC 80 Query: 61 -NPDFSKAP----VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 PD + P C P + +A D + + + + VD++ Sbjct: 81 VGPDGTGGPTIQPCGQCEP------CRAIAEGRHIDVIEMDAASHT---------GVDDV 125 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I A + +++ ++D V +++NA NALLK+LEEPP V F+ + + Sbjct: 126 REIIEASRYAAVSARFKIYIVDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPI 185 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC ++ + L + + D V AA GS + IL Sbjct: 186 TVLSRCQRFDLRRITADKLAAHFADICVKEGVTAEDEALMLVARAAEGSARDGLSIL--- 242 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ + DL A+++M ++D +D L+ +L A A+L Sbjct: 243 -DQAIA-HADLEGGGVTASAVREMLGLSDRGAVRD-------LLGLVLNGDGAGA-LASL 292 Query: 292 SGQLEEADQIAQIYFSLVKRVHAFSMYNL----DRRQMIFHLLSKARECNDLYFRDFYAI 347 Q + + SL++ VH ++ + D Q + ++ L F + + Sbjct: 293 RRQYDYGVDPQSVLRSLLETVHGITLTKVGTPPDAAQPLEERAAREEWAGSLSFPALHRL 352 >gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis HTCC2601] gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. HTCC2601] Length = 588 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 36/332 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + +GR+ A + G +G GK T A + Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC K + D + + + N V +IR Sbjct: 70 IGPDGEGGPT----TEPCGECEHCKAIMEGRHVDVIEMDAASNT---------GVGDIRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ + D V AA GS A +L D Sbjct: 177 LSRCQRFDLRRIEPEVMISLLRRIATAEQAEITDDALALVTRAAEGSARDATSLL----D 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS +Q+ L D+ D + + + + LS Sbjct: 233 QAISHGAGETT----------AEQVRAMLGLADRGRVMDLFEKIMYGDAPGALTE--LSQ 280 Query: 294 QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 Q + + L + H S+ + Sbjct: 281 QYADGADPLAVLRDLAEITHWTSVVKITPEAA 312 >gi|317180480|dbj|BAJ58266.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F32] Length = 571 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKSVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|119476225|ref|ZP_01616576.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2143] gi|119450089|gb|EAW31324.1| DNA polymerase III subunits gamma and tau [marine gamma proteobacterium HTCC2143] Length = 588 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 122/308 (39%), Gaps = 35/308 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G E + K L R+HHA LF G +G+GK ++ A + + S P C+ Sbjct: 1 MVGQEHVLKALINALDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEPCGQCS 60 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 ++ D + + + K V++ R + + G ++V Sbjct: 61 A------CLSISEGRFVDLIEVDAASRTK---------VEDTRELLENVQYAPTAGRFKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ N+ NALLK+LEEPP V F+L + + +TI SRCL ++S Sbjct: 106 YLIDEVHMLSTNSFNALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFNLKNMSPER 165 Query: 194 LYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + LEQ I + + +A GS+ A+ + D+ IS + Sbjct: 166 IVVHLQNVLEQEMITYEEPALWLLGRSADGSMRDALSL----TDQAISFGSGKLLEADVR 221 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLV 309 L + D+ ++ + I + + AA++ E A L+ Sbjct: 222 SMLGTI----------DRSAVYEIVEALIAENGAQVL--AAVNNMAEHAPDYLSALEELL 269 Query: 310 KRVHAFSM 317 +H ++ Sbjct: 270 MLLHRIAI 277 >gi|207091826|ref|ZP_03239613.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori HPKX_438_AG0C1] Length = 586 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPNSYSI----LLIERFFKI 306 >gi|188527438|ref|YP_001910125.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Shi470] gi|188143678|gb|ACD48095.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Shi470] Length = 571 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EKGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDAYSI----LLIERFFKI 306 >gi|148260992|ref|YP_001235119.1| DNA polymerase III subunits gamma and tau [Acidiphilium cryptum JF-5] gi|146402673|gb|ABQ31200.1| DNA polymerase III, subunits gamma and tau [Acidiphilium cryptum JF-5] Length = 614 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 121/323 (37%), Gaps = 34/323 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ HA + G +G+GK T A + Sbjct: 45 VLARKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTARILARALNC 104 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P PDPC + + D + + + N VD++R Sbjct: 105 TGADGQGGPT----PDPCGVCDNCVAILADRHPDVVEMDAASNT---------GVDDVRE 151 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I +V ++D V ++RNA NALLK+LEEPP V F+ + + T+ Sbjct: 152 IIEATRFRPMIARTKVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITV 211 Query: 178 RSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L E+ + D V AA GSV + +L D Sbjct: 212 LSRCQRFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLL----D 267 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ E A + +AD L D+ + FD L E + A Sbjct: 268 QAIARA--------DEGAPVTAELVADMLGLADRGMVFDLL-EAVAAGDPAGALGVMDRA 318 Query: 294 QLEEADQIAQIYFSLVKRVHAFS 316 AD + + L+ H S Sbjct: 319 HEAGADPVL-VMQDLLGLAHTLS 340 >gi|57168040|ref|ZP_00367179.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter coli RM2228] gi|57020414|gb|EAL57083.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter coli RM2228] Length = 518 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 131/330 (39%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ + Sbjct: 5 LAIKYRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCD 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 NGPSDTPCGTCKQ------CLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F + +N + L+++ + + FV + GS+ + +L Sbjct: 170 QHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQN 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 D S D++ K+++ +L++++ FDFL E ++ E+ Sbjct: 230 DISTSKITDMLGFLDPA----KIKEFYHAILTKNKDRVFDFLEELKDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ R + Sbjct: 286 LKESFFAKSSEFSTLIYERFFRILARAKSL 315 >gi|225626583|ref|ZP_03784622.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str. Cudo] gi|260169621|ref|ZP_05756432.1| DNA polymerase III subunits gamma and tau [Brucella sp. F5/99] gi|261759150|ref|ZP_06002859.1| DNA polymerase III gamma and tau [Brucella sp. F5/99] gi|225618240|gb|EEH15283.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str. Cudo] gi|261739134|gb|EEY27130.1| DNA polymerase III gamma and tau [Brucella sp. F5/99] Length = 602 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 16/279 (5%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-CDKI 235 C + L + L ++ KI D+ + A GS ++ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAIAHGA 240 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 S + + ++ + + L+ D A Sbjct: 241 SSVTAEAVRSMLGLADRARIIDLFEMLMRGDVAGALTEF 279 >gi|148926165|ref|ZP_01809850.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8486] gi|145845336|gb|EDK22429.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni CG8486] Length = 509 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L +K++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKTTDMLGFLDPEKIKVFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1] gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1] gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] Length = 602 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|269837957|ref|YP_003320185.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] Length = 589 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 105/288 (36%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQ--RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 + R + P G E I + L R+ HA LF G +G GK + A V Sbjct: 18 LYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKAVN 77 Query: 60 Q-NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 PD P C + + + D + + + N VD+IR + Sbjct: 78 CLAPDPEARPCNAC------EACEAINAGTAVDIIEIDAASNR---------GVDDIRDL 122 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +ID + R+A NA LK+LEEPP V F+L + + TI Sbjct: 123 REKVKYAPTQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIA 182 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC-- 232 SRC F + +++ + L E+ + D + A GS+ A+ +L Sbjct: 183 SRCQRFDFRRFALSDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALF 242 Query: 233 ----DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + D + ++ + D L +D + E Sbjct: 243 GETVDGKLVITADAVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAE 290 >gi|320009595|gb|ADW04445.1| DNA polymerase III, subunits gamma and tau [Streptomyces flavogriseus ATCC 33331] Length = 761 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 119/351 (33%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 14 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 74 QGPTPTPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L + + D V A GSV ++ +L D Sbjct: 181 HHYPFRLVPPGTLRGYLAEVCGKEGSVVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAGD 240 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 ++ S +D + ++ D ++ ++ D L Sbjct: 241 DGVTYAMATSLLGYTDGSLLDSVVDAFAAGDGAAAFEVVDRVIEGGNDPRRFVADLLERL 300 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G + D A + + + F L R + + Sbjct: 301 RDLVILAAVPDAGDKGLI---DAPADVVERMQAQASVFGAAELSRAADLVN 348 >gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC 23457] gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis ATCC 23457] gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28] gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis M5-90] Length = 602 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|291520251|emb|CBK75472.1| DNA polymerase III, subunits gamma and tau [Butyrivibrio fibrisolvens 16/4] Length = 533 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 25/275 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R F P + + G + I L + R+ HA LF G +G GK T+ A + Sbjct: 6 LYRKFRPQTFEDVKGQDHIVTTLQNQIKTDRIGHAYLFTGTRGTGKTTIAKILARTINCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K + + + + + + N VD IR+I Sbjct: 66 NPVNGCPCMEC------QTCKAITAGNSMNVIEMDAASNN---------GVDSIRQIVEE 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID V ++ A NALLK+LEEPP V+FIL + I TI SRC Sbjct: 111 VAYPPTEGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVVFILATTEVHKIPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F+ +S + + L++L + + ++ AA GS+ + +L D+ I+ Sbjct: 171 QRYDFHRISIDTIAARLQELMDKEGVQVEEKAIRYIAKAADGSMRDGLSLL----DQCIA 226 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 YI + L+ + I E+ S+ + D Sbjct: 227 FYIG--QTLTYDNVLKVLGAIDTEVFSRLLRNIID 259 >gi|304414791|ref|ZP_07395750.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella insecticola LSR1] gi|304283143|gb|EFL91556.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella insecticola LSR1] Length = 655 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 136/351 (38%), Gaps = 37/351 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L+ GR+HHA L G +G+GK ++ A + Sbjct: 5 VLARKWRPQVFSAVVGQQHVLTALANGLLLGRLHHAYLLSGTRGVGKTSIARLLAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + P C +++ D + + + K V++ R + Sbjct: 65 DKEITATPCGKCIS------CQEIEQGRFIDLIEIDAASRTK---------VEDTRELLD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V ++R++ NALLK+LEEPP V FIL + + T+ SR Sbjct: 110 NVQYAPVRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFILATTDPQKLPITVLSR 169 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 CL +L+ + LE+ ++ + AA GS+ A+ + D+ I Sbjct: 170 CLQFHLQALNIEQIRTQLEKVLQAEQVAYDSRALHLLAKAADGSLRDALSL----TDQAI 225 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + + + + Q+ L + + L+ ++ AA G Sbjct: 226 A-------MGQGQVTTETVSQMLGTLNDEQPLAIIEALLNADAVQLMTQVAQAASRGV-- 276 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 + ++ +H +M L H + +L R + Sbjct: 277 ---DWETLLVESLRLLHQIAMMQLLPASH--HQFDDQDQAIELRLRTLAKV 322 >gi|193213861|ref|YP_001995060.1| DNA polymerase III gamma and tau subunits [Chloroherpeton thalassium ATCC 35110] gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton thalassium ATCC 35110] Length = 403 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 19/247 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E + + L +GR+ H +F G +G+GK T A + Sbjct: 5 VIARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGYIFSGSRGVGKTTAARILAKGLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 R +PC + + + + + N +VD+IR + Sbjct: 65 EKILKDEAYRETVSEPCGECESCRDFDAGSSLNISEFDAASNN---------SVDDIRAL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G ++V +ID ++ A NA LK+LEEPP +FI + + TI Sbjct: 116 RENVRYAPQKGRYKVYIIDEFHMLSNAAFNAFLKTLEEPPSHAVFIFATTELNKVPPTIA 175 Query: 179 SRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F +S ++ + L ++ I + A G++ A +L D+ Sbjct: 176 SRCQKFNFKRISVLDIQERLAEICAAEAINIDVDSLTLIARKADGAMRDAQSLL----DQ 231 Query: 235 IISSYID 241 +IS ++ Sbjct: 232 VISFFLS 238 >gi|217976468|ref|YP_002360615.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris BL2] gi|217501844|gb|ACK49253.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris BL2] Length = 628 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 118/328 (35%), Gaps = 26/328 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS + GR+H A + G +G+GK T A Sbjct: 37 VLARKYRPSSFDDLIGQEAMVRTLSNAFDLGRIHQAYILTGVRGVGKTTTARILARAFNY 96 Query: 61 N-PDFSKAPV---RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 P P + + + D + + + + +D++R Sbjct: 97 ELPTGDGRPAVDGPTIHMAGFGAHCQAIMESRHVDVIEMDAASHT---------GIDDVR 147 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I ++V +ID V ++R A N LLK+LEEPP V F+ + + T Sbjct: 148 EIIEGARYKPVMARFKVYIIDEVHMLSRQAFNGLLKTLEEPPDHVKFLFATTEIEKVPVT 207 Query: 177 IRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +RSRC + L L + K+ D + AA GSV A+ +L Sbjct: 208 VRSRCQRFDLRRIDAGELSTFLATICAREKVAIEDEALALIARAAEGSVRDALSLL---- 263 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 D+ I+ I + + + ++ L D+ D + I ++ L Sbjct: 264 DQAIAHGPSADQIGAKGISAEALRA---MLGLADRGRIIDLFDALMRGRIAEALTG--LK 318 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNL 320 + I L + H + L Sbjct: 319 DLYDGGADPTAIMVELAEFTHLVTRLKL 346 >gi|83311548|ref|YP_421812.1| DNA polymerase III subunit delta' [Magnetospirillum magneticum AMB-1] gi|82946389|dbj|BAE51253.1| ATPase involved in DNA replication [Magnetospirillum magneticum AMB-1] Length = 363 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 26/362 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P LFGH E L + SGR+ HA L G +GIGKATL +R+A L Sbjct: 4 SPHPRETSELFGHGAAESALLDAWNSGRLAHAWLLCGPKGIGKATLAYRFARFALAGGGD 63 Query: 65 SKAPVR----MCNPDPCSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIR 119 P P +++AS D + + K K R+ I V+++R I Sbjct: 64 GGGLFGDVPSSLEIRPDHPVFRRIASQGHADLETVERGWADDKKSKLRSEIVVEDVRGIG 123 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +F+SLT G WRV++ID D MNRNAANA+LK LEEPP+ L +LISH+ +L TIRS Sbjct: 124 HFMSLTPAEGGWRVVIIDSADEMNRNAANAVLKVLEEPPRNALMLLISHSPGRLLPTIRS 183 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 RC + L E+ + L + + ++ + GS+ +A+ + + Sbjct: 184 RCRRLMLQPLGEDVVADLLTRQRPEVGPTEVAALAKLGEGSIGKALALADEGGLDLYRDL 243 Query: 240 IDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG----- 293 ++L+ +PR + + + D++ + +F + E + + + +A G Sbjct: 244 LNLLQGLPRLD--VPALHAFGDKVARPENDGSFRTVTELLGWWLARLIRAGGRQGAGMAE 301 Query: 294 -------------QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLY 340 + +++ + +LDR+Q + Sbjct: 302 VVAGEGALMERLLAAASLEHWLEVWEKITTLFARTEAVHLDRKQAVLGAFMAVERLARQG 361 Query: 341 FR 342 R Sbjct: 362 SR 363 >gi|91974569|ref|YP_567228.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris BisB5] gi|91681025|gb|ABE37327.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris BisB5] Length = 624 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 110/285 (38%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 31 VLARKYRPNSFEDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNY 90 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + K + D L + + + VD++R+I Sbjct: 91 EMPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHT---------GVDDVRQIND 141 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 142 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 201 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K L + + + AA GSV ++ + D+ I Sbjct: 202 CQRFDLRRVEADVLMKHLAGIAAKEGVEVEPEALGIIARAAEGSVRDSLSLF----DQAI 257 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIE 276 + L+ + L ++ ++ D L D AF + Sbjct: 258 AHAAGLVRADQVRQMLGLADRTRVIELFDALARGDIASAFQEFRD 302 >gi|326404392|ref|YP_004284474.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum AIU301] gi|325051254|dbj|BAJ81592.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum AIU301] Length = 614 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 121/323 (37%), Gaps = 34/323 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ HA + G +G+GK T A + Sbjct: 45 VLARKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTARILARALNC 104 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P PDPC + + D + + + N VD++R Sbjct: 105 TGADGQGGPT----PDPCGVCDNCVAILADRHPDVVEMDAASNT---------GVDDVRE 151 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I +V ++D V ++RNA NALLK+LEEPP V F+ + + T+ Sbjct: 152 IIEATRFRPMIARTKVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITV 211 Query: 178 RSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L E+ + D V AA GSV + +L D Sbjct: 212 LSRCQRFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLL----D 267 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ E A + +AD L D+ + FD L E + A Sbjct: 268 QAIARA--------DEGAPVTAELVADMLGLADRGMVFDLL-EAVAAGDPAGALGVMDRA 318 Query: 294 QLEEADQIAQIYFSLVKRVHAFS 316 AD + + L+ H S Sbjct: 319 HEAGADPVL-VMQDLLGLAHTLS 340 >gi|297379917|gb|ADI34804.1| DNA polymerase III, subunits gamma and tau [Helicobacter pylori v225d] Length = 582 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDAYSI----LLIERFFKI 306 >gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] Length = 584 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 119/320 (37%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + D L + + V +IR Sbjct: 71 IGPDGNGGPT----TEPCGQCEHCVAIMEGRHVDVLEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 118 IIDSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIGLLRKIATAEGAEISDDALALITRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D L++ IL+ A + Sbjct: 234 QAISHGAGETT----------ADQVRAMLGLADRGRVLD-LMDMILRGDAAGALTELGAQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 283 YAEGADPLA-VLRDLAEITH 301 >gi|281492850|ref|YP_003354830.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp. lactis KF147] gi|281376502|gb|ADA65988.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp. lactis KF147] Length = 552 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G E + L + ++ HA LF G +G GK + +A + Sbjct: 6 LYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCP 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + +L D + L + N VDEIR IR Sbjct: 66 NQVDGEPCNNCF------ICDSITKGSLDDVIELDAASNN---------GVDEIREIRDK 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + A+ ++V +ID V ++ A NALLK+LEEP + V+F+L + I +TI SR Sbjct: 111 STYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRV 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 F S++ ++ L ++ + D + AA G + A+ +L Sbjct: 171 QRFAFKSITTGDIRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQA 224 >gi|256112542|ref|ZP_05453463.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 3 str. Ether] gi|265993981|ref|ZP_06106538.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str. Ether] gi|262764962|gb|EEZ10883.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str. Ether] Length = 602 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 102/268 (38%), Gaps = 20/268 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK-----ILHYD 231 C + L + L ++ KI D+ + A GS ++ I H Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAIAHGA 240 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIA 259 I + ++ + + + + + Sbjct: 241 GSVIAEAVRSMLGLADRARIIDLFEMLM 268 >gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1 str. 9-941] gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis biovar Abortus 2308] gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC 23365] gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6 str. 870] gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str. 513] gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str. 686] gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis B2/94] gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4 str. 292] gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M292/94/1] gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33] gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1] gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94] gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9 str. C68] gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus bv. 1 str. 9-941] gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region [Brucella melitensis biovar Abortus 2308] gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC 23365] gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] Length = 602 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|317123591|ref|YP_004097703.1| DNA polymerase III subunits gamma and tau [Intrasporangium calvum DSM 43043] gi|315587679|gb|ADU46976.1| DNA polymerase III, subunits gamma and tau [Intrasporangium calvum DSM 43043] Length = 779 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 21/240 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q +GR+ HA LF G +G GK T A + Sbjct: 5 LYRRYRPESFAEVIGQEHVTEPLMQALRTGRVGHAYLFSGPRGCGKTTSARILARCLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C C + D + + + + VD+ R +R Sbjct: 65 EGPTPTPCGVCQS--CVALAR--GGPGSVDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S +++ +ID + NALLK +EEPP+ V F+ + ++ TIRSR Sbjct: 112 ASYGPAQSRFKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L LEQ + FV A GSV ++ +L D++I+ Sbjct: 172 HHYPFRLVPPAKLSSYMESLLEQEHVAVAPGVLSFVVRAGGGSVRDSLSVL----DQLIA 227 >gi|310815375|ref|YP_003963339.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium vulgare Y25] gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium vulgare Y25] Length = 583 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 118/322 (36%), Gaps = 37/322 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + +GR+ A + G +G GK T A + Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAAGRIAQAFIMTGIRGTGKTTTARIIAKGLNC 68 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D L + + V++I Sbjct: 69 IGVDGTGGPTTEPCGKC------EHCVAITEGRHVDVLEMDAASRT---------GVNDI 113 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + Sbjct: 114 REIIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPV 173 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L ++ D + AA GS A +L Sbjct: 174 TVLSRCQRFDLRRIEPEVMIALLRKIADAETAAITDDALALITRAAEGSARDATSLL--- 230 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS + ++ M +A D+ D + +L+ A + Sbjct: 231 -DQAISHGAGS-DVGTTADQVRGMLGLA------DRGRVLDLF-DMVLRGDAAGALSELS 281 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + + AD +A + L + H Sbjct: 282 AQYADGADPMA-VLRDLAEIAH 302 >gi|91977187|ref|YP_569846.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris BisB5] gi|91683643|gb|ABE39945.1| DNA polymerase III, delta prime subunit [Rhodopseudomonas palustris BisB5] Length = 346 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 105/334 (31%), Positives = 164/334 (49%), Gaps = 9/334 (2%) Query: 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA 67 P LFGH E+ L Y GR+ HA L G QGIGKATL +R A VL + D Sbjct: 15 PRETTALFGHHVAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLAHRDPLAD 74 Query: 68 PVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 V+ DP P V+ +A+ A L L S+N K G R VITVDE R F Sbjct: 75 AVQGAASLDLDPSHPVVRHVAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETIGFFGS 133 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 TA WRV ++D VD +N ++ANALLK +EEPPQ+ LF+LIS++ +L TI+SRC + Sbjct: 134 TAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPARVLPTIQSRCRKL 193 Query: 185 KFNSLSENNLYKALEQLKIMGW-DSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLI 243 L+ ++ A + D K A+ GSV+RA+ +L D + L+ Sbjct: 194 MLRPLATADVIAAAVAATDLAPGDPKLADAAAASEGSVSRALTLLGGDALTLHQKTTALL 253 Query: 244 -HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIA 302 +P + + + + + + D+ ++ + + I + +A + L ++A Sbjct: 254 DSLPNVDP--RALHALGESIGGTDRAT-LAAFVDGVDRWIAQRLRAGDANANLPRLARLA 310 Query: 303 QIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 +++ + + YNL+R+ ++F + E Sbjct: 311 EVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEA 344 >gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801] gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC 8801] Length = 648 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 21/274 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-- 62 + P L G E I L+ + R+ A LF G +G GK + A + Sbjct: 10 KYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCLAFS 69 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 D + P C + + + D + + + N VD IR I Sbjct: 70 DPTATPCGKC------EVCRAITRGSALDVIEIDAASNT---------GVDNIREIIERA 114 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 115 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ 174 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + + L +Q I V A G + A +L + Sbjct: 175 RFDYRRIPLAAMVSHLGKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTI 234 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFD 272 D + Q + + + S + ++ D Sbjct: 235 TTDKVWELVGAVPEQDLLLLLQAIASNNAELVID 268 >gi|86152635|ref|ZP_01070840.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613206|ref|YP_001000834.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81-176] gi|167005747|ref|ZP_02271505.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81-176] gi|85843520|gb|EAQ60730.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249219|gb|EAQ72180.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 81-176] Length = 509 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEASNVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSILIYERFFRILSKAKNM 315 >gi|107100963|ref|ZP_01364881.1| hypothetical protein PaerPA_01001993 [Pseudomonas aeruginosa PACS2] Length = 677 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 117/303 (38%), Gaps = 37/303 (12%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + S P C Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTPCGEC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 60 -----SVCREIDEGRFVDLIEVDAASRTK---------VEDTRELLDNVQYSPTRGRYKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V F+L + + TI SRCL ++ Sbjct: 106 YLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPPER 165 Query: 194 LYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + + L + D + AA GS+ A+ + D+ I+ + Sbjct: 166 VVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAADVR 221 Query: 250 YAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKSAKAAALSGQL 295 L ++ + LL D + + + +L EI A++ L Sbjct: 222 AMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQAL 281 Query: 296 EEA 298 EA Sbjct: 282 PEA 284 >gi|260426980|ref|ZP_05780959.1| DNA polymerase III subunit delta' [Citreicella sp. SE45] gi|260421472|gb|EEX14723.1| DNA polymerase III subunit delta' [Citreicella sp. SE45] Length = 372 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 169/363 (46%), Gaps = 29/363 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RLFG + E+ Y SGR+HH L G +G+GKATL +R A +L Sbjct: 12 VEGAPHPRETVRLFGQDRAEQDFLSAYTSGRLHHGWLITGPKGLGKATLAWRIARFLLAT 71 Query: 62 PD-------FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 P+ + P P P +++ + + L S + K + +T +TVDE Sbjct: 72 PEAQDDGLFGAPPPPETLGIAPDHPVMRRTLALSEPGLFLLRRSWDDKAKRLKTQLTVDE 131 Query: 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 +R+++ F +L++ G RV+++D +D +N +AANA+LK LEEPP + + ++ISH +L Sbjct: 132 VRKLKGFFTLSSAEGGRRVVIVDSMDELNVSAANAILKLLEEPPARTVLLMISHQPSRLL 191 Query: 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 TIRSRC ++ L ++ +AL Q + + A GSV A+++L++D K Sbjct: 192 PTIRSRCRELRLGPLDPEDMARALGQAGAEVRTDEAQALSALAAGSVGAALRLLNHDGLK 251 Query: 235 IISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDF---LIEFILKEICK------ 284 + + + L+ +PR + + + + + + D L++ +L + + Sbjct: 252 LYADLVRLLDTLPRLDR--PRAIALGESTAGKANEPRLDLVLTLMDLVLARLARTGVTGQ 309 Query: 285 ----------SAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +A + L+ A+I R N+D ++ ++ + Sbjct: 310 PPMPEAAPGEAAMLSRLAPDPATGRAWARIAQDAGDRARHARAVNVDPAALVLDMILQLH 369 Query: 335 ECN 337 + Sbjct: 370 KVA 372 >gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] Length = 578 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 123/332 (37%), Gaps = 30/332 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + I L Q + R+ A LF G +G GK + A + Sbjct: 8 LHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARILARSLNCL 67 Query: 62 --PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + + P CN + +++ D + + + N VD IR + Sbjct: 68 NVEEPTINPCCQCN------LCQTISAGNALDVIEIDAASNT---------GVDNIRDLI 112 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 W++ +ID ++ A NALLK+LEEPP +V+FIL + +L TI S Sbjct: 113 EKSKFAPVIARWKIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIIS 172 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC F+ + N+L L+++ +I + V + G + A +L Sbjct: 173 RCQRFDFSQIELNDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLP 232 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF---------ILKEICKSA 286 ++ + E + +K+ +A L +D E IL+ + Sbjct: 233 QPITVNAVLDLLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASIL 292 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 + L + + I +++ + Sbjct: 293 RDLVLKNAAPDYPDLCSISQESHQKLSEIASL 324 >gi|320536106|ref|ZP_08036159.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] gi|320147023|gb|EFW38586.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] Length = 589 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 121/292 (41%), Gaps = 28/292 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G + + L + +G++ HA LF G +G GK + A + Sbjct: 5 VTATRRRPQRFEDLLGQDFVAATLQKSIQAGKIAHAYLFSGPRGCGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C ++ + + D + + + N +V+++R+I+ Sbjct: 65 ESGPAPTPCGTCTA------CTEITAGSSLDVIEIDGASNT---------SVNDMRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SR Sbjct: 110 EILFPPNASRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S L +AL Q I D ++ A GSV A + D+I+ Sbjct: 170 CQQFNFKLVSVEQLKEALAQAAMESGIQADDEALYWIANEATGSVRDAYTLF----DQIV 225 Query: 237 SSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + I + + L + ++ + ++ A L E + I Sbjct: 226 AFSDGHITFEKIQEKLGLTGVDSIGKLLTACVEKNSNTALLLLDEILQNGIS 277 >gi|308182878|ref|YP_003927005.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori PeCan4] gi|308065063|gb|ADO06955.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori PeCan4] Length = 592 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDTYSI----LLIERFFKI 306 >gi|283954716|ref|ZP_06372233.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414] gi|283793769|gb|EFC32521.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414] Length = 511 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P +C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGIC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQTLIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I I + L +K++ +L++D++ F +L E Sbjct: 226 FCQNEISISKITDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEEL 270 >gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC 23445] gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC 23445] Length = 602 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGCHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] Length = 566 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 123/321 (38%), Gaps = 51/321 (15%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G I L ++ HA LF G +G GK ++ +A V +N Sbjct: 5 LYRKYRPQTFNDIVGQNHIVSVLKNAIEKNQISHAYLFYGPRGTGKTSIAKIFANEVNKN 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + K D + + + N VDE+R I+ Sbjct: 65 EVYQKE---------------------NVDIIEIDAASNN---------GVDEVRDIKEA 94 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G ++V +ID V + A NALLK+LEEPP V+FIL + I +TI SRC Sbjct: 95 IKFLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRC 154 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +LS L L E ++ + + A G + AI IL +S Sbjct: 155 QRFEFKNLSVEQLEDRLKYISENERLDIEEDAIKKIATLAKGGLRDAISILDQ-----VS 209 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 +Y + I + + I + S + +F + ++ KS + + + Sbjct: 210 NYSEKITL----------ENILEVTSSISEDSILEFYKYLLQGDVTKSLLMY--NDFVAQ 257 Query: 298 ADQIAQIYFSLVKRVHAFSMY 318 A + L+ +Y Sbjct: 258 AKDTKLLLNDLINITRDIVVY 278 >gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13] gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] Length = 602 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFNDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIKVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|237784776|ref|YP_002905481.1| DNA polymerase III subunits gamma and tau [Corynebacterium kroppenstedtii DSM 44385] gi|237757688|gb|ACR16938.1| DNA polymerase III, gamma and tau subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 990 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 127/350 (36%), Gaps = 38/350 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + LS+ +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C + +A D L + + V+++R +R Sbjct: 63 HGPTSTPCGECES------CRALAPGGPGSLDVTELDAASHR---------GVEDMRDLR 107 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +RV +ID + + NALLK +EEPP+ ++FI + +L+TI+S Sbjct: 108 DRAIYAPAESRYRVFIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKS 167 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY---DC 232 R F L+ N++ LE++ K+ DS V A GS ++ +L Sbjct: 168 RTHQYPFRLLAPNDMRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGA 227 Query: 233 DK---IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI-----EFILKEICK 284 D+ + ++ I ++ +A+ + + L ++ Sbjct: 228 DENGITYAHAAGVLGITDSALIDAAVESVANNDPAGLFTTINNVLDAGHDPRRFATDLVD 287 Query: 285 SAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + +A D +L + L R + Sbjct: 288 RFRDLLVLQSIPDAFDQGLVDAPLDQRETLADEAQSLGPATLTRCAAVVS 337 >gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9301] gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9301] Length = 586 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 29/277 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 + + P L G + I L Q + ++ A LF G +G GK + +A + Sbjct: 10 QKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69 Query: 64 FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 C D C +Q+ + D + + + N V+ IR I Sbjct: 70 DQPTITPCCKCDLC----RQITDGSALDIIEIDAASNT---------GVENIREIIERAR 116 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 W+V +ID ++ A+NALLK++EEPP +V+FIL + +LSTI+SRC Sbjct: 117 FAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQK 176 Query: 184 IKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSY 239 F +S +++++ L E+ I + + G + A +L Sbjct: 177 FDFRRISPSDIFQHLSEIAEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQ--------- 227 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +++ + + +Q + E+ + L+E Sbjct: 228 ---LNLLPEGITINNIQNLLGEVSENELTNLIKSLVE 261 >gi|291455830|ref|ZP_06595220.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM 20213] gi|291382758|gb|EFE90276.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM 20213] Length = 907 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + GR+ HA LF G +G GK + A V Sbjct: 28 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGRLTHAYLFSGPRGCGKTSSARILARCVNCA 87 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 88 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 132 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 133 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 192 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + L E+ I A GS+ + +L D++ Sbjct: 193 RTHHYPFRLVPQEVMGPYLETICEKESIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 248 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 249 MVGSVE--GVITHDAAVALLGFTPEALIGEAIDAVIDHNGEALYGVIQKVVVGGF----- 301 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 302 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 346 >gi|325479373|gb|EGC82469.1| DNA polymerase III, subunit gamma and tau [Anaerococcus prevotii ACS-065-V-Col13] Length = 621 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 116/285 (40%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L + HA +F GE+G GK T +A + Sbjct: 5 LYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K + + D + + + N +D+IR ++ Sbjct: 65 HPKDGSPCLECEN------CKAIDDESTIDIIEMDAASNR---------RIDDIRNLKDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I +TI SR Sbjct: 110 VIYPPNKLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + +FN + + + + L+ I + D + A G++ A+ IL D++IS Sbjct: 170 QNFEFNKIDSSKIKEQINIILDDKDIKMENEAIDLIIRKANGAMRDALSIL----DQVIS 225 Query: 238 SYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF 277 I E L + ++ + S +QK A ++ Sbjct: 226 YDSKDFKISDVEELLGVVDFYDIDKLTSSIFSFNQKEALSYIFSL 270 >gi|300744279|ref|ZP_07073298.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa M567] gi|300380004|gb|EFJ76568.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa M567] Length = 957 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 116/318 (36%), Gaps = 31/318 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L + R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFAEVIGQEHVTEPLITALTNNRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C D C + D + + + + VD R +R Sbjct: 65 QGPTPTPCGVC--DSCRELSR--DGGGSLDVIEMDAASHG---------GVDHARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +L +++ +ID + R NALLK +EEPP+ + FI + +L TIRSR Sbjct: 112 ATLAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L LE + + V A GSV ++ IL D++I+ Sbjct: 172 HHYPFRLVPPEVLLPYLEKLCSEENVPVESGVLQLVIRAGGGSVRDSLSIL----DQLIA 227 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEE 297 I A LL D +I+ + S A+S + Sbjct: 228 GANTESGISYDR---------AVALLGYTHAQLLDNVIDAFSAQDAPSLFE-AVSRVVAT 277 Query: 298 ADQIAQIYFSLVKRVHAF 315 + L++R+ Sbjct: 278 GQDPRRFVEDLLERLRDL 295 >gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] Length = 602 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|325972845|ref|YP_004249036.1| DNA polymerase III subunits gamma and tau [Spirochaeta sp. Buddy] gi|324028083|gb|ADY14842.1| DNA polymerase III, subunits gamma and tau [Spirochaeta sp. Buddy] Length = 543 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 113/284 (39%), Gaps = 24/284 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P L G E + + GR+ HA LF G +G+GK + A + Sbjct: 5 VTATRKRPQIFDNLVGQEFVVSTIKHAIEQGRIAHAYLFSGPRGVGKTSSARILARALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ K++ D + + + N +V++IR+I+ Sbjct: 65 EQGPTATPCGVCSN------CKEITQGNNVDVIEIDGASNT---------SVNDIRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ +A NALLK++EEPP ++FI + + +TIRSR Sbjct: 110 EVLFPPQASKYKIYIIDEVHMLSTSAFNALLKTIEEPPAYIIFIFATTELQKVPATIRSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F + + + L +++++ + ++ + GS+ A + Sbjct: 170 CQQFHFQLIDLDLIKSCLSEAAKEMEVAADEDALFWIAKESTGSMRDAYTLFDQVVSFSQ 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 + + + + + + Q+ + Q + D L Sbjct: 230 GHITMEKISSKLGLVGIDQIVAIVSQLLENKTQQALRSVQDLLF 273 >gi|299132608|ref|ZP_07025803.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2] gi|298592745|gb|EFI52945.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2] Length = 616 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 35 VLARKYRPSNFNDLIGQEAMVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 94 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + D L + + + +D++R+I Sbjct: 95 ELPDGSVKAPTITMPTPGVHCQAIMESRHIDVLEMDAASHT---------GIDDVRQITD 145 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 146 GVRYAPSSARYKVYIIDEVHMLSEKAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 205 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L + + + AA GSV ++ +L D+ I Sbjct: 206 CQRFDLRRVDADVLMSHLANIVTREGVEAEPEALGLIARAAEGSVRDSLSLL----DQAI 261 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIE 276 + L+ L + + + L D AF E Sbjct: 262 AHAAGLVRAEDVRQMLGLADRSRVIDLFEHLAKGDIASAFAEFRE 306 >gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] Length = 602 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CB0205] Length = 614 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 116/302 (38%), Gaps = 25/302 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L SGR+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCLSSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 HPTPEPCGSC------ELCTSIANGNALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + + L + L ++ I V A G + A +L D ++ Sbjct: 176 RFDYRRIPLDALEQHLGWIAKEENIQITPEALHVVAQRAQGGLRDAESLL--DQLSLLPG 233 Query: 239 YIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 ++ + A+ Q++ Q+A L + + + + + A ++G L Sbjct: 234 PVEPTAVWELLGAVPEQELLQLAQALAGAEPLGVIEAIRNLLERGREPGAVLQGMAGLLR 293 Query: 297 EA 298 + Sbjct: 294 DL 295 >gi|187918326|ref|YP_001883889.1| DNA polymerase III subunits gamma and tau [Borrelia hermsii DAH] gi|119861174|gb|AAX16969.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH] Length = 550 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 35/327 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 P L G + + + L + R+ +A +F G +G+GK + +A + Sbjct: 10 KRRPRDFNSLEGQDFVVETLKHSIENNRIANAYIFSGPRGVGKTSSARAFARCLNCQAGP 69 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P +C K + + D + + + N +V ++R+I+ + Sbjct: 70 TIMPCGVCFS------CKSIDNDNSLDIIEIDGASNT---------SVQDVRQIKEEIMF 114 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 + +RV +ID V ++ +A NALLK++EEPP ++FI + + TI+SRC Sbjct: 115 PPASSKYRVYIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQHF 174 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F L +Y+ L+ + I D ++ + GSV A + D+I+S Sbjct: 175 NFRLLPLEKIYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLF----DQIVSLSN 230 Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300 I+ E KM +DE L +K+A L + LKE+ A L+G E Sbjct: 231 SDINF---EQIKSKMGLTSDEFL---EKLALSILND-DLKELLCVLDAVFLTGISCE--- 280 Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIF 327 Q ++ LD + ++F Sbjct: 281 --QFLLDAIEFFREILFLKLDIKNLMF 305 >gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] gi|158447261|gb|EDP24256.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] Length = 540 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 115/286 (40%), Gaps = 28/286 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R F P R+ G I + L +G + HA LF G +G GK + +A V Sbjct: 7 IYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVNCL 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + + + + + N +D+IR ++ Sbjct: 67 NPIDGNPCNECEN------CKMILEDKALEVVEMDAASNR---------RIDDIRELKEK 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK LEEPP+ ++FIL + + TI SRC Sbjct: 112 VIYPPQIVKYKVYIIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRC 171 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ +++ + L L + + + + + G++ A+ +L D++++ Sbjct: 172 QRFEFKRINNSDIVENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLL----DQVVA 227 Query: 238 SYIDLIHIPRQEYALQKMQ-----QIADELLSQDQKIAFDFLIEFI 278 + + I I L + +++ +L+ + + + Sbjct: 228 TGKEKITIEDINECLGLVNLNMLFELSQSILNSSKNETIETFRNLV 273 >gi|300726477|ref|ZP_07059923.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] gi|299776205|gb|EFI72769.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14] Length = 614 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 20/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P+ + G + L S ++ HA LF G +G+GK T +A + Sbjct: 6 VSARKYRPMTFASVVGQSALTTTLKNAVKSKKLAHAYLFCGPRGVGKTTCARIFAKVINC 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 NP C K ++ L + N +V+ I+ + Sbjct: 66 ENPREDGEACNECES------CKAFNEGRSYNIFELDAASNN---------SVENIKTLM 110 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + G ++V +ID V ++ A NA LK+LEEPP V+F+L + IL TI S Sbjct: 111 EQTRIPPQVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILS 170 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY 230 RC F ++ N L+Q+ I D+ + + A G + A+ I Sbjct: 171 RCQIYDFERMTVPNTIAHLKQIADKEGITYEDAALEVIAEKADGGMRDALSIFDQ 225 >gi|308184501|ref|YP_003928634.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SJM180] gi|308060421|gb|ADO02317.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SJM180] Length = 589 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALNNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 ETGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDTYSI----LLIERFFKI 306 >gi|322688320|ref|YP_004208054.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis 157F] gi|320459656|dbj|BAJ70276.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis 157F] Length = 970 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + D E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLALAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|120611312|ref|YP_970990.1| DNA polymerase III subunits gamma and tau [Acidovorax citrulli AAC00-1] gi|120589776|gb|ABM33216.1| DNA polymerase III, subunits gamma and tau [Acidovorax citrulli AAC00-1] Length = 701 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 70/374 (18%), Positives = 136/374 (36%), Gaps = 49/374 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 32 VLARKYRPKTFSEMVGQEHVVQALSNALVQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 91 Query: 61 NPD-----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + + P +C + + + D+ L + N VDE+ Sbjct: 92 QGEDGQGGITATPCGVCQA------CRDIDAGRFVDYTELDAASNR---------GVDEV 136 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 137 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 196 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L + + + AA GS+ A+ + Sbjct: 197 TVLSRCLQFNLRPMAPETVLEHLTRVLARESVPAEPQALRLLARAARGSMRDALSL---- 252 Query: 232 CDKIISSYIDLIHIPRQEYALQK-----MQQIADELLSQDQKIAFDF------------- 273 D+ I+ + L + ++ D L D + + Sbjct: 253 TDQAIAFGSGQLQEAGVRQMLGSVDRSYVFRLIDALARGDGRTVVETSESLRMHGLSAAS 312 Query: 274 LIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 +E + + + A A+ + D + + D Q+++ + Sbjct: 313 TLEEMSAVLQRMAVFQAVPQMADVVDPADPEASEIARLAGTLPA---DETQLLYSICLHG 369 Query: 334 RECNDLYFRDFYAI 347 R L ++ A+ Sbjct: 370 RTELGLAPDEYAAL 383 >gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] Length = 602 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + + + D + + + + +D+IR I Sbjct: 72 KTNTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 625 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 80 YKTSEIDKPTIDLRTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L + I + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ ++ Q A++ M +A D+ D + ++ A Q Sbjct: 245 IAHGAGVV----QAEAVRSMLGLA------DRARIVDLFQHIVKGDVA--AALGEFQNQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLTDLADFTH 310 >gi|157415423|ref|YP_001482679.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni 81116] gi|157386387|gb|ABV52702.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 81116] gi|307748065|gb|ADN91335.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni M1] gi|315932303|gb|EFV11246.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni 327] Length = 509 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSILIYERFFRILSKAKNM 315 >gi|317182029|dbj|BAJ59813.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F57] Length = 571 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|317012528|gb|ADU83136.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Lithuania75] Length = 579 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 ETGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLKERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|86747794|ref|YP_484290.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris HaA2] gi|86570822|gb|ABD05379.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris HaA2] Length = 627 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 36 VLARKYRPNSFEDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNY 95 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + K + D L + + + VD++R+I Sbjct: 96 ELPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHT---------GVDDVRQIND 146 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 147 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 206 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L K L E+ + + AA GSV ++ + D+ I Sbjct: 207 CQRFDLRRVEADVLMKHLGGIAEKEGVEVEAEALGIIARAAEGSVRDSLSLF----DQAI 262 Query: 237 SSYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIE 276 + L+ + L ++ ++ D L D AF + Sbjct: 263 AHAAGLVRADQVRQMLGLADRTRVIELFDALARGDIAAAFAEFRD 307 >gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] Length = 631 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 117/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 23 VLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 82 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 83 YKTTEIDRPTIDLKIP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 131 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 132 EQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 191 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S +L L + I D + AA GS + +L D+ Sbjct: 192 RCQRFDLRRISAGDLVGLFSTILSKENIEAEDEALAMIARAAEGSARDGLSLL----DQA 247 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + A++ M +A D+ D +L ++ + + Q Sbjct: 248 IAHGAGRVE----ADAVRSMLGLA------DRARVVDLFGHIVLGDVAAALSE--FNSQY 295 Query: 296 EEADQIAQIYFSLVKRVH 313 E + + L H Sbjct: 296 EAGASPSVVLTDLADFTH 313 >gi|88596575|ref|ZP_01099812.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 84-25] gi|88191416|gb|EAQ95388.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. jejuni 84-25] gi|284926383|gb|ADC28735.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni IA3902] gi|315926579|gb|EFV05960.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928540|gb|EFV07840.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni subsp. jejuni 305] Length = 511 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|218562769|ref|YP_002344548.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360475|emb|CAL35272.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 509 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCLAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I I + L QK++ +L++D++ F +L E ++ E+ Sbjct: 226 FCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFVYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter alkaliphilus HTCC2654] gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2654] Length = 576 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 29/343 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + + R+ A + G +GIGK T A + Sbjct: 9 VLARKYRPETFADLIGQEAMVRTLRNAFAADRIAQAFVMTGIRGIGKTTTARIIAKGMNC 68 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC +A D + + + V +IR Sbjct: 69 IGPDGNGGPT----VEPCGECEHCVAIAEGRHVDVMEMDAASRT---------GVGDIRE 115 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 116 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 175 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD-C 232 SRC + ++ L ++ K D + AA GS A +L Sbjct: 176 LSRCQRFDLRRIEPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLLDQAIS 235 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + D + ++ + D +L D A L + A A+ Sbjct: 236 HGAGETTADQVRAMLGLADRGRVLDLIDMILRGDAAGALAEL----SAQYADGADPMAVL 291 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLD---RRQMIFHLLSK 332 L E + + + D R Q + LS+ Sbjct: 292 RDLAEVTHWVSVI-KITPEAAEDPTVSPDERARGQAMAEALSQ 333 >gi|315586612|gb|ADU40993.1| DNA polymerase III, gamma/tau subunit DnaX [Helicobacter pylori 35A] Length = 559 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDTYSI----LLIERFFKI 306 >gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330] gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330] Length = 602 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLHRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] Length = 620 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 120/320 (37%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + D L + + V +IR Sbjct: 71 IGPDGNGGPT----TEPCGQCEHCTAIMEGRHVDVLEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I ++ A + +++ +ID V ++ +A NALLK+LEEPP+ V FI + + T+ Sbjct: 118 IIDSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ + D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIALLRRIADAEQAQISDDALALITRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS +Q+ L D+ D + ILK A + Sbjct: 234 QAISHGAGETT----------AEQVRAMLGLADRGRVLDLF-DLILKGDAAGALTEISTQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YADGADPLA-VLRDLAEVTH 301 >gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605] gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605] Length = 614 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 116/312 (37%), Gaps = 25/312 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L S R+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCLNSE 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGTC------ELCTTIAAGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L L EQ I V + G + A +L D ++ Sbjct: 176 RFDFRRIPLDALNTHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLL--DQLSLLPP 233 Query: 239 YIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 I+ + A+ Q++ ++ + S + + + + A L+G L Sbjct: 234 PIEAAAVWDLLGAVPEQELLELVGAMSSAEPVQLLEATRNLLDRGRDPGAVLQGLAGMLR 293 Query: 297 EADQIAQIYFSL 308 + +A L Sbjct: 294 DLVLMAAAPDRL 305 >gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916] gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916] Length = 679 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 108/304 (35%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G I L S R+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQNAIAATLGHALRSNRIAPAYLFSGPRGTGKTSSARILARSLNCLSSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGSC------ELCTTIAAGTALDVIEIDAASNT---------GVDNIRDLIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + + L L EQ I V A G + A +L Sbjct: 176 RFDFRRIPLDALEAHLTWIAEQEAIPIQPEAVHVVAQRAQGGLRDAESLLDQLSLLPAPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 D + Q + +A+ L S D + + + A L+G L + Sbjct: 236 EADAVWDLLGAVPEQDLIALAEALASGDPLQLVESSRSLLDRGRDPGAVLQGLAGILRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|311897064|dbj|BAJ29472.1| putative DNA polymerase III subunit gamma/tau [Kitasatospora setae KM-6054] Length = 738 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 66/352 (18%), Positives = 126/352 (35%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFAEVIGQEHVTAPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C + +A+ D + + + + VD+ R +R Sbjct: 65 QGPTPDPCGECQS------CRDLATGGPGSIDVIEIDAASHG---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + NALLK +EEPP+ + FI + ++ TIRS Sbjct: 110 ERAFFAPVHSRYKIFILDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYD 231 R F + L L Q +I DS V A GSV ++ +L Sbjct: 170 RTHHYPFRLVPPGTLRDYLAQVCGREEIQVEDSVFPLVVRAGAGSVRDSMSVMDQLLAGA 229 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 + ++ + + + L + ++ D +QD F + + + ++ Sbjct: 230 GEAGVTYPMATALLGYTDATL--LDEVVDAFAAQDGATVFQVVDRVVEGGHDPRRFVTDL 287 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + + +A D A + + F L R + + Sbjct: 288 LERLRDLVILATVPDAGEKSLIDAPADRIAVMRAQADRFGPAELSRAADLVN 339 >gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] Length = 611 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 116/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 22 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 81 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 82 IGEDGQGGPTTEPCGKC------EHCTAIMEGRHVDVMEMDAASRT---------GVGDI 126 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + Sbjct: 127 REIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPV 186 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L+++ + + AA GS A +L Sbjct: 187 TVLSRCQRFDLRRIEPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATSLL--- 243 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS Q+ L D+ D LI+ IL+ SA Sbjct: 244 -DQAISHGAGETT----------ADQVRAMLGLADRGRVLD-LIDMILRGDAASALTELS 291 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + E AD +A + L + H Sbjct: 292 AQYAEGADPLA-VLRDLAEITH 312 >gi|237750661|ref|ZP_04581141.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879] gi|229373751|gb|EEO24142.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879] Length = 939 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 34/288 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G E + + L S ++ +A LF G +G GK + A + Sbjct: 45 LALKYRPKTFAELVGQESVARTLCLALDSKKIANAYLFSGLRGSGKTSSARILARSLQCE 104 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + +P C A D L + N K +D++R + Sbjct: 105 RGITSSPCGTCAN------CIAALKGAHLDITELDGASNRK---------IDDMRDLIEQ 149 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ +ID V + + A N+LLK+LEEPP V FIL + + +TI SR Sbjct: 150 TKYKPTMGRFKIFIIDEVHMLTKEAFNSLLKTLEEPPNYVKFILATTDPLKVPATILSRT 209 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + L L + + ++ D + +GS+ + +L D+ I Sbjct: 210 QHFRFKKIPTTALKNHLAHILQKENVSSDEASLDMLIRNGHGSLRDTLTLL----DQAIV 265 Query: 238 SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKS 285 + ++ Q++AD L + D AFD L + +L++ + Sbjct: 266 FCQNSLNT----------QKLADMLGALD-PSAFDTLFQALLRKDMQE 302 >gi|289523191|ref|ZP_06440045.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503734|gb|EFD24898.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 557 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 22/287 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + I K L S ++ HA LF G +G GK T+ A + Sbjct: 5 LYRKYRPGRFSDVVGQDGIVKILKHSLRSKKIGHAFLFSGPRGCGKTTVARIVAKALNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K ++ D + + + N ++EIR ++ Sbjct: 65 DAREGEPCDSC------EVCKTISRGESLDVIEIDGASNR---------GIEEIRNLKSQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L + + ++V +ID V + A NALLK+LEEPPQ+V+FIL + A + TIRSRC Sbjct: 110 IGLASFSLPYKVYIIDEVHMLTDAAFNALLKTLEEPPQRVVFILATTAPEKVPLTIRSRC 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD---CDK 234 L FN LS ++ L ++ + + A GS+ A+ +L +K Sbjct: 170 LRFYFNRLSSVDIVNRLCRVAQEEGFDYEEEALWELARQADGSLRDALTLLEQALSLEEK 229 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKE 281 ++ ++ L+ M ++ S+ + L + E Sbjct: 230 ALTLDSVVLLFGGSRSTLEDMVKLMALDPSKGYAKMREILKRGLTGE 276 >gi|316932084|ref|YP_004107066.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris DX-1] gi|315599798|gb|ADU42333.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris DX-1] Length = 624 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 14/281 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNY 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + K + D L + + + VD++R+I Sbjct: 89 ELPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHT---------GVDDVRQIND 139 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 140 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 199 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L ++ + + AA GSV ++ + Sbjct: 200 CQRFDLRRVEADVLMNHLSNIAQKEGVEVEPEALGIIARAAEGSVRDSLSLFDQAIAHAA 259 Query: 237 SSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + ++ ++ D L D AF + Sbjct: 260 GLVRADAVRQMLGLADRTRVIELFDALARGDIAAAFAEFRD 300 >gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium tumefaciens str. C58] gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str. C58] Length = 624 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 114/318 (35%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 20 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 79 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 D P + + D + + + + +D+IR I Sbjct: 80 YKTDTIDKPTIDLRIP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREII 128 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 129 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 188 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S +L + + AA GS + +L D+ Sbjct: 189 RCQRFDLRRISAADLVGLFTAIAGKEGFEAEPQALSMIARAAEGSARDGLSLL----DQA 244 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + A++ M +A D+ D + ++ + +GQ Sbjct: 245 IAHGGGRVE----AEAVRGMLGLA------DRARIVDLFQHVVKGDVAAALSE--FNGQY 292 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 293 EAGANPVVVLNDLADFTH 310 >gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102] gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102] Length = 593 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 114/309 (36%), Gaps = 31/309 (10%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L S R+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCLNSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGTC------ELCTTIAAGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD----- 233 F + + L L EQ I V + + G + A +L Sbjct: 176 RFDFRRIPLDALEAHLSWIAEQEAIEIQPEAIHVVALRSQGGLRDAESLLDQLSLLPPPI 235 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + + + L +P QE + Q+ + S + + + + A L+G Sbjct: 236 EATAVWDLLGAVPEQE-----LLQLVQAMSSAEPVALLEATRNLLDRGRDPGAVLQGLAG 290 Query: 294 QLEEADQIA 302 L + +A Sbjct: 291 ILRDLVLMA 299 >gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] Length = 607 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 117/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 17 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 76 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 D P DPC + D + + + V +IR Sbjct: 77 IGEDGQGGPT----TDPCGKCEHCTAIMEGRHVDVMEMDAASRT---------GVGDIRE 123 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 124 IIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 183 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ + + AA GS A +L D Sbjct: 184 LSRCQRFDLRRIEPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLL----D 239 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D L++ IL+ +A + Sbjct: 240 QAISHGAGETT----------ADQVRAMLGLADRGRVLD-LMDMILRGDAAAALTELSAQ 288 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 289 YAEGADPLA-VLRDLAEITH 307 >gi|251781218|ref|ZP_04824134.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081665|gb|EES47726.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 544 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 24/268 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 6 LYREWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C K++ D L + N + R + Sbjct: 66 NLQNGEPCNEC------EMCKKINEGLSMDVTELDAASNNGIDRIRDI---------IDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 TKYPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +++ ++ L ++ + D D + A G++ ++ IL D Sbjct: 171 QRFDFKRINQKDISDRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSILDQAIAMGDN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIAD 260 + I ++ + EY I D Sbjct: 231 NIKYDDLISILGLVTNEYLFDITNSIVD 258 >gi|91762357|ref|ZP_01264322.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91718159|gb|EAS84809.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 557 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 122/332 (36%), Gaps = 29/332 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P L G + + + +S + ++ +A LF G +GIGK T A + Sbjct: 7 VLALKYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +C + C +++ D L + + VD++R + Sbjct: 67 SNGID----NLCKEELC-ENCNAISNSNHIDVLEMDAASKT---------GVDDVRDLIE 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T +++ +ID V +++ A NALLK+LEEPP+ + FI + I T+ SR Sbjct: 113 FSRYGPTTAKYKIFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSR 172 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + + + K E+ D + + GSV A+ +L + Sbjct: 173 CQRFDLSRIKSLELFDFIKKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRALLTLD 232 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +E L Q+I F+ + E E+ + + G Sbjct: 233 K---------DKELDLAAAQKIFGYFDKSQLIDLFELIFEGKETEVLNTYREIYNQGV-- 281 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 E + L+ NLD + + Sbjct: 282 EPKIFINDFLELLYYFKNIDSLNLDGNNFLLN 313 >gi|71083213|ref|YP_265932.1| DNA-directed DNA polymerase subunit gamma/tau [Candidatus Pelagibacter ubique HTCC1062] gi|71062326|gb|AAZ21329.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 557 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 122/332 (36%), Gaps = 29/332 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P L G + + + +S + ++ +A LF G +GIGK T A + Sbjct: 7 VLALKYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + +C + C +++ D L + + VD++R + Sbjct: 67 SNGID----NLCKEELC-ENCNAISNSNHIDVLEMDAASKT---------GVDDVRDLIE 112 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F T +++ +ID V +++ A NALLK+LEEPP+ + FI + I T+ SR Sbjct: 113 FSRYGPTTAKYKIFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSR 172 Query: 181 CLSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + + + K E+ D + + GSV A+ +L + Sbjct: 173 CQRFDLSRIKSLELFDFIRKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRALLTLD 232 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 +E L Q+I F+ + E E+ + + G Sbjct: 233 K---------DKELDLAAAQKIFGYFDKSQLIDLFELIFEGKETEVLNTYREIYNQGV-- 281 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 E + L+ NLD + + Sbjct: 282 EPKIFINDFLELLYYFKNIDSLNLDGNNFLLN 313 >gi|94497479|ref|ZP_01304049.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58] gi|94423110|gb|EAT08141.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58] Length = 538 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 73/324 (22%), Positives = 124/324 (38%), Gaps = 31/324 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L GR+ HA L G +G+GK + A + Sbjct: 10 VLARKYRPRSFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC K +A D + + + + VD++R Sbjct: 70 VGPDGQGGPT----IDPCGQCEPCKAIAEGRHIDVVEMDAASHT---------GVDDVRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V +++NA NALLK+LEEPP V F+ + + T+ Sbjct: 117 IIEAVRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTV 176 Query: 178 RSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + L +E + + AA GS + IL D Sbjct: 177 LSRCQRFDLRRIPAELLATHFTHVVEAESVAAEPEALALIAQAAEGSARDGLSIL----D 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ +L Q+ + L D+ L + E A Sbjct: 233 QAIAHAE-----MDDGPSLVTAAQVREMLGLSDRGSVRRLLALLLEGETASLIAAVREQY 287 Query: 294 QLEEADQIAQIYFSLVKRVHAFSM 317 L + +A + L++ VHA ++ Sbjct: 288 AL-GVEPLA-LMRGLMELVHAVTL 309 >gi|295395500|ref|ZP_06805695.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri ATCC 49030] gi|294971671|gb|EFG47551.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri ATCC 49030] Length = 894 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 67/354 (18%), Positives = 120/354 (33%), Gaps = 46/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFADVIGQDHVTGPLKAALDNGRVNHAYLFSGPRGCGKTTSARILARCLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C + +A+ D + + + + VD+ R +R Sbjct: 65 QGPTSTPCGQCAS------CRDLATGGPGSLDVVEIDAASHN---------GVDDARDLR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 ++V ++D + NALLK +EEPP V F+ + ++ TIRS Sbjct: 110 ERAVYAPARDRFKVFILDEAHMVTPQGFNALLKLVEEPPPHVKFVFATTEPEKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVAR------------ 223 R F + + L L +L + V A GSV Sbjct: 170 RTHHYPFRLVPPDILTAYLTELCQRENVAIGKGVLPLVVRAGGGSVRDTLSVLDQLMAGA 229 Query: 224 ---------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 A+ +L Y D ++ +D + + ++ + QD + + L Sbjct: 230 GPDGLDYTTAVALLGYTPDSLLGDIVDAFSAGDGAAVFRVVDRVIES--GQDPRRFVEDL 287 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 +E I L EA + L+ + + L R + + Sbjct: 288 LERFRDLIVVGTAPNQARAFLPEAPD--DLLERLITQSQQYGAAELSRAADMLN 339 >gi|42528086|ref|NP_973184.1| DNA polymerase III subunits gamma and tau [Treponema denticola ATCC 35405] gi|41819131|gb|AAS13103.1| DNA polymerase III, gamma and tau subunits, putative [Treponema denticola ATCC 35405] Length = 612 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 28/292 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G E + L + +G++ HA LF G +G GK + A + Sbjct: 5 VTATRRRPQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAKVLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ + + D + + + N +V+++R+I+ Sbjct: 65 AEGPRPTPCGHCTS------CEEITAGSCLDVIEIDGASNT---------SVNDVRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N+ +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SR Sbjct: 110 EILFPPNSNRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S L +AL +L I D ++ A GSV A + D++ Sbjct: 170 CQQFNFKLVSIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLF----DQVA 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + IH + + ++ ++++ + A L + I Sbjct: 226 AFSDGHITFEKIHEKLGLTGVDSINKLVSACVAKNGQEALSILDGILQGGIS 277 >gi|192289049|ref|YP_001989654.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris TIE-1] gi|192282798|gb|ACE99178.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas palustris TIE-1] Length = 623 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 103/281 (36%), Gaps = 14/281 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNY 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + K + D L + + + VD++R+I Sbjct: 89 ELPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHT---------GVDDVRQIND 139 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 140 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 199 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L ++ + V AA GSV ++ + Sbjct: 200 CQRFDLRRVEADVLMNHLSNIAQKEGVEVEPEALGIVARAAEGSVRDSLSLFDQAIAHAA 259 Query: 237 SSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + ++ ++ D L D AF + Sbjct: 260 GVVRADAVRQMLGLADRTRVIELFDALARGDIAAAFAEFRD 300 >gi|188589354|ref|YP_001922591.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E3 str. Alaska E43] gi|188499635|gb|ACD52771.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E3 str. Alaska E43] Length = 546 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 99/268 (36%), Gaps = 24/268 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 6 LYREWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N + R + Sbjct: 66 NLQDGEPCNEC------EMCKKINEGLSMDVTELDAASNNGIDRIRDI---------IDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 TKYPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +++ + L ++ + D D + A G++ ++ IL D Sbjct: 171 QRFDFKRINQKEIADRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSILDQAIAMGDN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIAD 260 + I ++ + EY I D Sbjct: 231 NIKYDDLISILGLVTNEYLFDITNSIVD 258 >gi|150019759|ref|YP_001312013.1| DNA polymerase III subunits gamma and tau [Clostridium beijerinckii NCIMB 8052] gi|149906224|gb|ABR37057.1| DNA polymerase III, subunits gamma and tau [Clostridium beijerinckii NCIMB 8052] Length = 548 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 31/305 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E I L + R+ HA LF G +G GK + A + Sbjct: 6 LYREWRPKNFEDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCL 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D L + N K R + Sbjct: 66 DLQNGEPCNEC------EMCRKINEGLAIDVTELDAASNNGIDKIRDI---------IDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ ++D V ++ A NA LK+LEEPP++V+FIL + + TI SRC Sbjct: 111 TKYPPQEARYKIYIMDEVHMLSVGAVNAFLKTLEEPPKRVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 F +S+ + L+++ I D + G++ A+ IL D Sbjct: 171 QRFDFKRISQKEISSRLKKITDSQGITYEQKSLDLISRVCDGAMRDALSILDQAIAMGED 230 Query: 234 KI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL------IEFILKEICKSA 286 KI + ++ + EY I D + + I D L ++ +K++ Sbjct: 231 KINYEDLVSILGLVTNEYLFDITYAIIDRSIEKSM-IIIDKLVYSGKDMQLFIKDLIAHF 289 Query: 287 KAAAL 291 + + Sbjct: 290 RNLLM 294 >gi|296130956|ref|YP_003638206.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena DSM 20109] gi|296022771|gb|ADG76007.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena DSM 20109] Length = 878 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 130/352 (36%), Gaps = 31/352 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L Q SG+ +HA LF G +G GK T A + Sbjct: 5 LYRRYRPESFAEVIGQDHVTAPLRQALRSGQANHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C C + A D + + + + VD+ R +R Sbjct: 65 EGPTDTPCGVC--PSCVELARGGA--GSLDVVEIDAASHG---------GVDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V ++D ++ NALLK +EEPP V FI + ++ TIRSR Sbjct: 112 ATFAPARDRYKVFILDEAHMVSPQGFNALLKIVEEPPPHVKFIFATTEPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + + L LEQL + V A GSV + +L D++I+ Sbjct: 172 HHYPFRLVPPDVLVPYLEQLCATEGVPVGSGVLPLVVRAGGGSVRDTLSVL----DQLIA 227 Query: 238 -------SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 Y + + + + + D + ++D AF + I+ Sbjct: 228 GSGEAGLGYEGAVSLLGFTHT-SLLDDLVDAIAARDGASAFRVVERVIVTGHEPRRFVED 286 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLD--RRQMIFHLLSKARECNDLY 340 L +L + +A + + + L+ R Q + S+ DL Sbjct: 287 LLERLRDLIVLAASGEAAMAVLRDLPPDQLERMRAQSVHLGASELSRSADLA 338 >gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] Length = 654 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 118/318 (37%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 44 VLARKYRPKTFEDLVGQEPMVQTLENAFDTGRIAQAWMLTGVRGVGKTTTARILARGLNY 103 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + P + K + D + + + + + +IR I Sbjct: 104 EVPGEADKPTVKLTQEGTH--CKAIMEGRHVDVIEMDAASHT---------GISDIREII 152 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 153 DAARYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 212 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ L L ++ I D + A GS ++ +L D+ Sbjct: 213 RCQRFDLRRIDQSKLIGLLRRISDAEGIQISDEALMLIARAGEGSARDSLSLL----DQA 268 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 ++ I L++M +A D+ D + I + A L Q Sbjct: 269 MAHGSGAIE----ADDLRQMLGLA------DRARVIDLFGHLMAGRIEDAL--AELQAQY 316 Query: 296 EEADQIAQIYFSLVKRVH 313 E A I L H Sbjct: 317 EIGADPAIILTDLADFTH 334 >gi|34558379|ref|NP_908194.1| DNA polymerase III subunits gamma and tau [Wolinella succinogenes DSM 1740] gi|34484098|emb|CAE11094.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Wolinella succinogenes] Length = 544 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 20/273 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + L G + I + LS SGR+ HA LF G +G GK + ++ + Sbjct: 5 LALKYRPTRFEDLIGQDPISQTLSLALDSGRLSHAYLFSGLRGSGKTSSARIFSKALNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P +C D + + + + K +D+IR + Sbjct: 65 QGPSSTPCDVCEN------CLAAKEGRHMDIIEMDAASSRK---------IDDIRDLIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 TKYHPAMGRFKIFIIDEVHMLTKEAFNALLKTLEEPPPYVKFILATTDPLKLPATILSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F ++ ++ ++++ + + + + GS+ + +L Sbjct: 170 QHFRFKKIAHRDVIAHIQKILHLENVPFEPEALEMIARSGGGSLRDTLTLLDQSIIFCKG 229 Query: 238 SYI-DLIHIPRQEYALQKMQQIADELLSQDQKI 269 + L+ + ++++ D + S D+ Sbjct: 230 NLTPALVAQMLGLVDPELLERLFDAIFSHDEPT 262 >gi|222110704|ref|YP_002552968.1| DNA polymerase iii subunits gamma and tau [Acidovorax ebreus TPSY] gi|221730148|gb|ACM32968.1| DNA polymerase III, subunits gamma and tau [Acidovorax ebreus TPSY] Length = 678 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 71/373 (19%), Positives = 136/373 (36%), Gaps = 47/373 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + LS R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C P + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVC------PACTDIDSGRFPDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QGLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + + L + + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRVLAAENVPAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL------------- 274 + + ++ + + + ++ D L D + + Sbjct: 230 IAFGSGQLQEA---AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADTLRINGLSAAST 286 Query: 275 IEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 +E + + + A A+ AD + + A D Q+++ + R Sbjct: 287 LEDMSAVLQRMAVLQAVPQMAAAADASDPEAAEVARLSAALPA---DETQLLYSICLHGR 343 Query: 335 ECNDLYFRDFYAI 347 L ++ A+ Sbjct: 344 ADLGLAPDEYAAL 356 >gi|209886655|ref|YP_002290512.1| DNA polymerase III, subunits gamma and tau [Oligotropha carboxidovorans OM5] gi|209874851|gb|ACI94647.1| DNA polymerase III, subunits gamma and tau [Oligotropha carboxidovorans OM5] Length = 632 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 106/285 (37%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 44 VLARKYRPSNFDDLIGQEAMVRTISNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 103 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 A + + D L + + + +D++R+I Sbjct: 104 ELPDGSAKGPSIAMPVPGVHCQAIMESRHIDVLEMDAASHT---------GIDDVRQITD 154 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++ ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 155 GVRYAPSSARYKVYIIDEVHMLSEKAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 214 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + + + AA GSV ++ +L D+ I Sbjct: 215 CQRFDLRRVDAEVLMTHLANIVTREGVEAEPEALGLIARAAEGSVRDSLSLL----DQAI 270 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIE 276 + L+ L + + + L D AF E Sbjct: 271 AHAAGLVRAEDVRQMLGLADRTRVIDLFEHLAKGDIASAFAEFRE 315 >gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62] gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62] Length = 585 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 118/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFVDLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + D + + + V +IR Sbjct: 71 IGPDGNGGPT----TDPCGTCEHCTAIMEGRHVDVMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V +++NA NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFIFATTEIRQVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMG----WDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + + ++ D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIALMRKIAASESAEITDDALALITRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D + I++ SA + Sbjct: 234 QAISHGAGATT----------ADQVRSMLGLADRGRVLDLF-DMIMRGDAHSALSEINQQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YADGADPMA-VLRDLAEITH 301 >gi|116622271|ref|YP_824427.1| DNA polymerase III subunits gamma and tau [Candidatus Solibacter usitatus Ellin6076] gi|116225433|gb|ABJ84142.1| DNA polymerase III, subunits gamma and tau [Candidatus Solibacter usitatus Ellin6076] Length = 568 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 117/286 (40%), Gaps = 28/286 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E ++ L R+ H +F G++G GK T+ A + Sbjct: 4 VIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNC 63 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C K+++ D + + + N ++E+R +R Sbjct: 64 VQGPTATPCGVCAS------CKEISEGGTVDVIEIDAASNR---------GINEMRELRE 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID + A NALLK++EEPP+ +F+L + S I +TI SR Sbjct: 109 NVRYQPARDRYKIFIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASR 168 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F S+ L + Q I + A GSV ++ L D+ I Sbjct: 169 CQHFSFRSVDFQELVDRMSWICGQEGIEADAEALAVLAAAGEGSVRDSLSAL----DQAI 224 Query: 237 SSYIDLIHIPR-----QEYALQKMQQIADELLSQDQKIAFDFLIEF 277 + I P ++L+ ++++ + L + + ++ + + E Sbjct: 225 ACCGAKITAPEVRALLGAFSLESLEKVTEALAAGESRMMLEVVDEL 270 >gi|282856831|ref|ZP_06266090.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455] gi|282585341|gb|EFB90650.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455] Length = 640 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 19/234 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G +++ SG + HA LF G +G GK T+ +A V Sbjct: 5 LYRRYRPQKFSDVVGQSAAIGVITRAIESGAIGHAYLFSGPRGCGKTTVARLFAKAVNCP 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + + D + + + N +VDEIR ++ Sbjct: 65 SKTGAEPCNEC------ETCRAIREGSCLDVIEIDGASNN---------SVDEIRNLKEH 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++L + T ++V +ID V ++ +A NALLK+LEEPP++V+F+L + A + TIRSRC Sbjct: 110 VALASFTCPYKVYIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRC 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 I F+ ++ + L+Q +I D + + G + A+ ++ Sbjct: 170 QHIPFHGMTLEQIVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQA 223 >gi|330470589|ref|YP_004408332.1| DNA polymerase III subunits gamma and tau [Verrucosispora maris AB-18-032] gi|328813560|gb|AEB47732.1| DNA polymerase III, subunits gamma and tau [Verrucosispora maris AB-18-032] Length = 966 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 123/353 (34%), Gaps = 44/353 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LSQ SGR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPRTFAEVIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P +C + + S D + + + + VD+ R +R Sbjct: 65 HGPTPEPCGVCAS------CRSLGSDGAGSIDVIEIDAASHG---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID ++ NALLK +EEPP+ V FI + +L TI+S Sbjct: 110 EKAFFAPASSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 R F + L LEQL + + V A GS ++ +L Sbjct: 170 RTHHYPFRLIPPKVLRPYLEQLCQAEGVEVEPAVFPLVVRAGGGSARDSLSVLDQLIAGA 229 Query: 231 DCDKII------------SSYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLI 275 D + ++ ID + D + ++ A D L Sbjct: 230 GPDGVTYARAAALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEAGHDPRRFASDLLE 289 Query: 276 EFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + AA G + D A + + L R I H Sbjct: 290 RLRDLIVLQQVPDAAAKGLI---DGPADQIERMTAQAQRLGPATLSRCADIVH 339 >gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3] gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi DSS-3] Length = 583 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + D + + + V++IR Sbjct: 71 IGPDGNGGPT----TEPCGKCEHCVAIMEGRHVDVMEMDAASRT---------GVNDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + ++ + ++ + + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS +Q+ L D+ D L++ IL+ +A + Sbjct: 234 QAISHGAGETS----------AEQVRAMLGLADRGRVLD-LMDMILRGDAGAALTELGAQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 283 YAEGADPMA-VLRDLAEITH 301 >gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL S4-171] Length = 547 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 37/310 (11%) Query: 28 YCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 + HA LF G +G GK + +A + P C K Sbjct: 1 IIQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNEC------EICKGTTDG 54 Query: 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 ++ D L + + N V+EIR IR + ++V +ID V ++ A Sbjct: 55 SIPDVLEIDAASNN---------GVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAF 105 Query: 148 NALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKI 203 NALLK+LEEPP+ V+FIL + + TI SR F ++ ++ LE + KI Sbjct: 106 NALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLEFILKEEKI 165 Query: 204 MGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELL 263 + V AA G + A+ +L D++IS + + + E AL+ +A LL Sbjct: 166 PYDEKALMIVARAAEGGMRDALSLL----DQVISYGSEEVTV---EDALEITGSVAQGLL 218 Query: 264 SQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRR 323 ++ AFD + + L+ L E ++ L+ +Y + Sbjct: 219 TKLVSAAFDG---------DAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQ--KA 267 Query: 324 QMIFHLLSKA 333 + L +A Sbjct: 268 PSLEETLERA 277 >gi|39933692|ref|NP_945968.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas palustris CGA009] gi|39647538|emb|CAE26059.1| possible DNA polymerase III tau subunit [Rhodopseudomonas palustris CGA009] Length = 623 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 103/281 (36%), Gaps = 14/281 (4%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 29 VLARKYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNY 88 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + K + D L + + + VD++R+I Sbjct: 89 ELPDGSVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHT---------GVDDVRQIND 139 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 140 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 199 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L ++ + V AA GSV ++ + Sbjct: 200 CQRFDLRRVEADVLMNHLSNIAQKEGVEVEPEALGIVARAAEGSVRDSLSLFDQAIAHAA 259 Query: 237 SSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D + ++ ++ D L D AF + Sbjct: 260 GVVRADAVRQMLGLADRTRVIELFDALARGDIAAAFAEFRD 300 >gi|254384081|ref|ZP_04999426.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1] gi|194342971|gb|EDX23937.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1] Length = 753 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 120/351 (34%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 16 LYRRYRPESFAEVIGQEHVTVPLMQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 75 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 76 QGPTPTPCGECQS--CRDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L + L + D V A GSV ++ +L D Sbjct: 183 HHYPFRLVPPGTLREYLGEVCGREGATVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAD 242 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 + ++ S +D + ++ D ++ ++ D L Sbjct: 243 QGVTYAMATSLLGYTDGSLLDSVIDAFAAGDGAAAFEVVDRVVEGGNDPRRFVADLLERL 302 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G + D A + + + F L R + + Sbjct: 303 RDLVILAAVPDAGEKGLI---DAPADVVERMQAQASVFGAAELSRAADLVN 350 >gi|297193443|ref|ZP_06910841.1| DNA polymerase III subunits gamma and tau [Streptomyces pristinaespiralis ATCC 25486] gi|297151784|gb|EFH31358.1| DNA polymerase III subunits gamma and tau [Streptomyces pristinaespiralis ATCC 25486] Length = 458 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 119/351 (33%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 16 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 75 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 76 QGPTPTPCGECQS--CQDLAR--TGPGSIDVIEIDAASHG---------GVDDARELREK 122 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 123 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 182 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L + I D V A GSV ++ +L D Sbjct: 183 HHYPFRLVPPGTLRTYLAEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAD 242 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 ++ S +D + ++ D ++ ++ D L Sbjct: 243 DGVTYAMATALLGYTDGSLLDSVVDAFAAGDGAAAFEVVDRVIEGGNDPRRFVADLLERL 302 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G + D A + + + F L R + + Sbjct: 303 RDLVILAAVPDAGTKGLI---DAPADVVERMQAQAAVFGAAELSRAADLVN 350 >gi|153951826|ref|YP_001397740.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni subsp. doylei 269.97] gi|152939272|gb|ABS44013.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp. doylei 269.97] Length = 509 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 132/330 (40%), Gaps = 35/330 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + + L R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 S P C D + + + N +++I+ + Sbjct: 65 QGPSDTPCGTC------KHCIAALEGKHIDIIEMDAASNR---------GLEDIQALIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 T + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 TKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F + ++ + L+++ + + F+ + GS+ + +L D+ I Sbjct: 170 QHFRFKQIPQSEILNHLKEILHKENVKFEEEALKFIARSGNGSLRDTLTLL----DQAII 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF-------ILKEICKS 285 + I+ + L QK++ +L+++++ F +L E ++ E+ Sbjct: 226 FCQNEINTSKITDMLGFLDPQKIKAFYQAILAKNKEKVFAYLEELQDYEASSVIDEMLFY 285 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAF 315 K + + E + I + +F ++ + Sbjct: 286 LKESFFAKSTEFSTLIYERFFRILSKAKNM 315 >gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter denitrificans OCh 114] gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114] Length = 582 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 115/320 (35%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + D + + + N V IR Sbjct: 71 IGPDGTGRPT----TDPCGTCEHCTAIMEGRHVDVMEMDAASNT---------GVANIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + + ++ + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS Q+ L D+ D + IL+ A + Sbjct: 234 QAISHGAGETT----------AAQVRAMLGLADRGRVLDLF-DMILRGDTAGALTELSAQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 283 YAEGADPMA-VLRDLAEITH 301 >gi|329849471|ref|ZP_08264317.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis biprosthecum C19] gi|328841382|gb|EGF90952.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis biprosthecum C19] Length = 602 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 107/294 (36%), Gaps = 29/294 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 44 VLARKYRPRTFEDLIGQEAMVRTLTNAFSAGRIAHAFMLTGVRGVGKTTTARLLARALNY 103 Query: 61 NPDFSKAPVRMCNPDPC----SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 D ++ P + + D L L + VD +R Sbjct: 104 ESDTVQSSGGRGGPSVDLTTMGIHCQAIIDGRHIDVLELDAASRT---------GVDAMR 154 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 + + ++V +ID V ++ A NALLK+LEEPP FI + + T Sbjct: 155 DLLESVRYAPVEARYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVT 214 Query: 177 IRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 I SRC + L LE++ + + AA GSV ++ +L Sbjct: 215 ILSRCQRFDLRRVEPETLTPHLEKICGLEGVRIDADAVALIARAAEGSVRDSLSLLDQAL 274 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 + + + + + D L D+ I ++ ++ Sbjct: 275 ------------VQGEAGEIVGAEVVRDMLGLADRSATLALFENIISGQMSEAL 316 >gi|258510125|ref|YP_003183559.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476851|gb|ACV57170.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 586 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 20/236 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + RA+ P + L G + + L+ SG++ HA LF G +G GK + A V Sbjct: 6 LYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAVNCL 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P P C + + D + + N VDEIR +R Sbjct: 66 QPRDGFEPCNAC------EACTSIQRGSNVDVQEIDAASNR---------GVDEIRDLRD 110 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +V ++D V + A NALLK+LEEPP VLF+L + + +TI SR Sbjct: 111 HVHYLPTMAKKKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISR 170 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 C F ++ + + L + I DS + AA G + A+ + Sbjct: 171 CQRFDFRRIAPEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAA 226 >gi|291320674|ref|YP_003515939.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae] gi|290753010|emb|CBH40986.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae] Length = 614 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 138/357 (38%), Gaps = 52/357 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A + Sbjct: 6 LYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFANLINCY 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N D ++C + + D + + + N VD IR +R Sbjct: 66 HNNDDYSKLCQICEENGSNTI----------DIIEMDAASNN---------GVDSIRELR 106 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V +++ A NALLK+LEEPP V+FI + I TI S Sbjct: 107 DKIQHLPSAGNYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILS 166 Query: 180 RCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F +S + + LEQ I ++ A GS+ A+ I+ D+ Sbjct: 167 RVQRFNFRRMSNDTLVKQIKSILEQEDIKYDAEALPYIARLAVGSMRDALSII----DQA 222 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + I Y+ + +I + L + + A L + I Sbjct: 223 NAYGNGYIKFSDVMYSFGITSNDNLIKIINSLYNGKPEEALMLLQDLKNGGI-------- 274 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 Q+ SL+ F +Y + +F +L+ + N L F YA+ Sbjct: 275 ---------DPKQLVESLLSIFKDFIIYEKTYKDSLFEILT-LDQFNTLEFDLRYAV 321 >gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC 7002] gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC 7002] Length = 742 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 121/338 (35%), Gaps = 46/338 (13%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I LS R+ A LF G +G GK + A + Sbjct: 9 KYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAKSLNCLNAA 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C + +A+ + D + + + N VD IR + Sbjct: 69 QPTPHPCGEC------EVCRAIANGSALDVIEIDAASNT---------GVDNIRELIERS 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAI------------- 225 + + + + L ++ I + A G + A Sbjct: 174 RFDYRRIPLDAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDAESLLDQLSLLSGEI 233 Query: 226 ------KILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFIL 279 ++ ++ + + +IH E +Q+ + + + ++ + L F L Sbjct: 234 TPDKVWDLVGAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNR--GREPLVVLQNLASFYL 291 Query: 280 KEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSM 317 + AK A G L Q + L + + + + Sbjct: 292 NLLI--AKTAPQRGDLIAVTQP--TWEILCQEANQWEL 325 >gi|308062041|gb|ADO03929.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Cuz20] Length = 571 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EKGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNTITES----------KVAEMLGAIDRSVLEDFFQSLINQDEVQLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDAYSI----LLIERFFKI 306 >gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571] gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571] Length = 613 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 110/310 (35%), Gaps = 22/310 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + LS + SGR+ A + G +G+GK T A + Sbjct: 30 VLARKYRPQNFDDLIGQEAMVRTLSNAFASGRIAQAYILTGVRGVGKTTTARILARALNY 89 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + K + D + + + N ++++IR I Sbjct: 90 EPMDGSPGGPSLDLSVFGKHCKDIIESRHVDVMEMDAASNT---------SINDIREIIE 140 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ SR Sbjct: 141 GSRYRPVMARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 200 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L ++ + V AA GSV ++ +L D+ I Sbjct: 201 CQRFDLRRVEAGVLAAHLSRICAKENVSVDAEALSIVARAAEGSVRDSLSLL----DQAI 256 Query: 237 SSYIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 + + L + + D L+ D A + + L Sbjct: 257 AHGGGAVTGEEVRRLLGLADKARVIDLFDALMKGDMPRALAEFRDQYDSGADPAVILTDL 316 Query: 292 SGQLEEADQI 301 + ++ Sbjct: 317 AEFTHLVTRL 326 >gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] Length = 596 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK + A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAKGLNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC ++ D + + + V +IR Sbjct: 71 IGPDGNGGPT----TEPCGQCEHCVAISEGRHVDIMEMDAASRT---------GVGDIRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP+ V F+ + + T+ Sbjct: 118 IIESVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + K L+ D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIKMLQGNAASENANITDDALALITRAAEGSARDAQSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS + ++ M +AD D + E I++ A A + Sbjct: 234 QAISHGAGETTADQ----VRAMLGLADRGRVMD-------MFEMIMRGDAAGALAELSAQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 283 YSDGADPLA-VLRDLAEITH 301 >gi|217033792|ref|ZP_03439218.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10] gi|216943841|gb|EEC23281.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10] Length = 573 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 605 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 31/314 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALNY 81 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + D + + + + +D+IR I Sbjct: 82 KTADIDQP--SVDLAVLGEHCLAIMEGRHVDVIEMDAASHT---------GIDDIRDIIE 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 131 RVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 190 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + I D + AA GS ++ IL D+ I Sbjct: 191 CQRFDLRRIDAGALVGHLASISAKEGISVDDDALAMIARAAEGSARDSLSIL----DQAI 246 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M +A D+ D E ++K +A + Q + Sbjct: 247 AHGAGSVG----ADAVRAMLGLA------DRARIVDLF-EHVMKGDVAAALGEFRA-QYD 294 Query: 297 EADQIAQIYFSLVK 310 A + L + Sbjct: 295 TGADPAAVLTDLAE 308 >gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] Length = 589 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 132/347 (38%), Gaps = 30/347 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + + G + + + + + HA +F G +G GK + A V Sbjct: 5 LYRKYRSRTFDEVVGQDQVINSIKYQVKNSTVSHAYIFSGTRGTGKTSTAKILARAVNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K + D + + + N VD+IR +R Sbjct: 65 HPIDGNPCNEC------ETCKSILRGTNLDVVEMDAASNN---------GVDDIRDLREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +T ++V +ID V +++ A NALLK LEEPP+ ++FIL + + TI SR Sbjct: 110 AFYPPSTSKYKVYIIDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRT 169 Query: 182 LSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +S + N+ + L + ++ D + A GS+ A+ +L D Sbjct: 170 QRYTFKRISIDTISKNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVVAINDN 229 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSAK 287 + I+++ + ++ + I + S + + ++ I + Sbjct: 230 NISYDKIIEVLGVTTEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFR 289 Query: 288 AAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 ++ L +I ++ + + V + ++ I +LS+ + Sbjct: 290 NILIAKNLNYPRKIIRV-RDMDRYVAIANAFSNSEILNIIKILSETK 335 >gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] Length = 605 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFNDLIGQEPMVRTLNNAFETGRIAQAWMLTGVRGVGKTTTARILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTIDQPTIDLSVQ--GENCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ +I D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEQIAVDDTSLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGTVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|21674147|ref|NP_662212.1| DNA polymerase III, gamma/tau subunit [Chlorobium tepidum TLS] gi|21647307|gb|AAM72554.1| DNA polymerase III, gamma and tau subunits [Chlorobium tepidum TLS] Length = 620 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 19/247 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +PC + + A + + N +VD+IR + Sbjct: 65 QRMIDDPQYLKEVTEPCGVCESCRDFDAGASLNISEFDAASNN---------SVDDIRLL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI Sbjct: 116 RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L Q+ I + A GS+ A IL D+ Sbjct: 176 SRCQRFNFKRIPLDRIQGQLRQICDAEGITADADALQLIARKAQGSMRDAQSIL----DQ 231 Query: 235 IISSYID 241 +I+ ID Sbjct: 232 VIAFAID 238 >gi|317178927|dbj|BAJ56715.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F30] Length = 568 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPTTILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] Length = 578 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 115/320 (35%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 9 VLARKYRPETFVDLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 68 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P +PC + D + + + N G IR Sbjct: 69 IGPDGNGGPT----TEPCGECEHCVAIMEGRHVDVMEMDAASNTGVGN---------IRE 115 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 116 IIDSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 175 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + + ++ D + AA GS A +L D Sbjct: 176 LSRCQRFDLRRIEPEVMITLMRKIASAEGAEIADDALALITRAAEGSARDATSLL----D 231 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS + L D+ D + IL+ A S Sbjct: 232 QAISHGAGETTAVQVRAMLGLA----------DRGRVLDLF-DMILRGDAAGALNELSSQ 280 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 281 YSDGADPMA-VLRDLAEITH 299 >gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] Length = 596 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 112/320 (35%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFKADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P +PC + D L + + V ++R Sbjct: 71 IGPDGQGGPT----TEPCGQCEHCTAIMEGRHVDVLEMDAASRT---------GVGDVRE 117 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ Sbjct: 118 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 177 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 178 LSRCQRFDLRRIEPEVMIALLRRIADAEGAQITDDALALITRAAEGSARDATSLL----D 233 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS L D+ D + I+K A Sbjct: 234 QAISHGAGETSAAEVRSMLGLA----------DRGRVLDLF-DLIMKGDAAGALTELGGQ 282 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E AD +A + L + H Sbjct: 283 YAEGADPMA-VLRDLAEITH 301 >gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. BTAi1] gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. BTAi1] Length = 613 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 23 VLARKYRPSSFADLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + D L + + + VD++R+I Sbjct: 83 ELPDGSVKGPTIHMPVLGTHCQAIMESRHMDILEMDAASHT---------GVDDVRQIND 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 134 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 193 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL-----HYD 231 C + + L K L + + + AA GSV ++ +L H Sbjct: 194 CQRFDLRRVEADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAIAHSA 253 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + ++ + + + +A S D AF E Sbjct: 254 GEVRADDVRQMLGLADRTRVIDLFHHLA----SGDIAAAFKEFRE 294 >gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] Length = 597 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 31/314 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 14 VLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALNY 73 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P + + + D + + + + +D+IR I Sbjct: 74 KTATVDQP--SVDLAVLGEHCQAIMEGRHVDVIEMDAASHT---------GIDDIRDIIE 122 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 123 RVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 182 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L L + I D + AA GS ++ IL D+ I Sbjct: 183 CQRFDLRRIDAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSIL----DQAI 238 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + A++ M +A D+ D + ++ A A Q + Sbjct: 239 AHGAGSVS----AEAVRAMLGLA------DRARIVDLFEHVMKGDVA--AVLAEFRAQYD 286 Query: 297 EADQIAQIYFSLVK 310 A + L + Sbjct: 287 TGADPAAVLTDLAE 300 >gi|313888954|ref|ZP_07822614.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845127|gb|EFR32528.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei ACS-146-V-Sch2b] Length = 577 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 23/256 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + L+G E + L + + HA +F+G +G GK + + V Sbjct: 5 LYRKYRSKTFDELYGQEAVVASLKNQVKNNEISHAYIFQGTRGTGKTSAAKILSRAVNCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ + ++ D + + + N VD+IR ++ Sbjct: 65 HPVDGNPCNECEN------CKRILNESVLDVVEMDAASNN---------GVDDIRDLKDK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID V +++ A NALLK LEEPP+ ++FIL + I +TI SR Sbjct: 110 VIYPPQALKYKVYIIDEVHMLSKGAFNALLKILEEPPRHLIFILATTEIEKIPATILSRS 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F +S ++ L+++ + + A G++ A+ +L D++I+ Sbjct: 170 QKFNFKRISVEDIESNLKRITELEGKSCDEEVFTLIAKTADGAMRDALSVL----DQLIT 225 Query: 238 SYIDLIHIPRQEYALQ 253 D I + L Sbjct: 226 KNKDHIRLEDAMEVLG 241 >gi|237753173|ref|ZP_04583653.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC BAA-430] gi|229375440|gb|EEO25531.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC BAA-430] Length = 587 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 71/327 (21%), Positives = 131/327 (40%), Gaps = 26/327 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P+ L G E + + LS S R+ HA LF G +G GK + +A + Sbjct: 6 LALKYRPMDFDELVGQEAVSRTLSLALDSKRLSHAYLFSGLRGSGKTSSARIFARALQCE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + K + D + L + N K +D+IR + Sbjct: 66 SGPRSKPCGTCANCLAANPHK----MSHIDIMELDGASNRK---------IDDIRDLIEQ 112 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 N G +++ +ID V + R A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 113 TKYHPNIGRFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRT 172 Query: 182 LSIKFNSLSE----NNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD------ 231 +F +S+ +L K L+ +I + + + GS+ + +L Sbjct: 173 QHFRFKRISDRSIFEHLKKILQNEQIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYSSY 232 Query: 232 --CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAA 289 ++ ++ + LI+ + + + L + + F++ +L E+ K Sbjct: 233 NVTSEVCANMLGLINAESLNALFECIFTQDRDSLLKMLEGFFEYECGMLLDEMSIFLKEK 292 Query: 290 ALSG-QLEEADQIAQIYFSLVKRVHAF 315 L G + + +F ++ + Sbjct: 293 LLKGNDTRYSSLLIDRFFRIITQAKEL 319 >gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110] gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110] Length = 692 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 86/226 (38%), Gaps = 21/226 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN--P 62 + P L G E I LS S R+ A LF G +G GK + A + Sbjct: 16 KYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVE 75 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + AP C + + + D + + + N VD IR I Sbjct: 76 VPTAAPCGQC------EVCRAITRGSALDVIEIDAASNT---------GVDNIREIIERS 120 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP++V+F+L + +L TI SRC Sbjct: 121 QFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQ 180 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 + + + L ++ I V A G + A Sbjct: 181 RFDYRRIPLEAMVNHLTIIAQKENIEIETEALILVAQIANGGLRDA 226 >gi|154248246|ref|YP_001419204.1| DNA-directed DNA polymerase [Xanthobacter autotrophicus Py2] gi|154162331|gb|ABS69547.1| DNA-directed DNA polymerase [Xanthobacter autotrophicus Py2] Length = 347 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 163/340 (47%), Gaps = 11/340 (3%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ A P RLFGH +E L + +GR+ HALL G +GIGKATL +R A VL Sbjct: 13 VLPGAPHPRDQARLFGHGVVEADLIGDFRAGRLPHALLIGGPEGIGKATLAYRLARMVL- 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 +A + P +Q+AS + D L L K TVI + +RR+R Sbjct: 72 -SGGPEAGSHSLDLPVTHPVFRQVASQSHPDLLVLHRVPEAGEEKIPTVIPAEMVRRVRS 130 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 F TA G WRV ++D VD +N ANALLK+LEEPP + LF+LISHA +L TIRSR Sbjct: 131 FFGATAAAGGWRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSR 190 Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWD---SKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 ++ L ++ AL+ LK D + A+ GSV RAI + + ++ S Sbjct: 191 TRLLRMRPLGSADVLAALDHLKEEMADLDAATLPSAAEASGGSVRRAIVLARGEGMEVRS 250 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + + +PR + + + L D+ D IE + + A Sbjct: 251 ATLKALEQLPRPRP--EDLHALGARL-QGDRSDGLDLFIEAVSDYVAARATQGDEPR--H 305 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 ++ +++ + + ++NLDR+ ++F + + E Sbjct: 306 RLVRLGEVWEKVRRSAREADVFNLDRKALVFRVFADLAEA 345 >gi|257066283|ref|YP_003152539.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii DSM 20548] gi|256798163|gb|ACV28818.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii DSM 20548] Length = 626 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + L + HA +F GE+G GK T +A + Sbjct: 5 LYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C K + + D + + + N +D+IR ++ Sbjct: 65 HPVDGSPCLECEN------CKAIDDESTIDIIEMDAASNR---------RIDDIRNLKDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + N ++V +ID + R A NALLK +EEPP ++FIL + I +TI SR Sbjct: 110 VIYPPNKLKYKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSRA 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 + +FN + + + + L+ I + D + A G++ A+ IL D+++S Sbjct: 170 QNFEFNKIEKGKIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSIL----DQVLS 225 Query: 238 SYIDLIHIPRQEYALQ-----KMQQIADELLSQDQKIAFDFLIEF 277 + E L + ++ + + S +QK A ++ Sbjct: 226 YDTKSYKLADVENLLGVVDFYDIDKLTNSIFSFNQKKALSYIFSL 270 >gi|288959353|ref|YP_003449694.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510] gi|288911661|dbj|BAI73150.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510] Length = 636 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 47/336 (13%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ SGR+ A + G +G+GK T A + Sbjct: 27 VLARKYRPKTFDELIGQDALVRTLTNAIQSGRIAQAFMLTGVRGVGKTTTARIIARALNC 86 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 N + +P +C+ + +A D + + + + VD+I Sbjct: 87 TGPDGNGGPTVSPCGVCDN------CRAIAEDRHVDVMEMDAASHT---------GVDDI 131 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + + + +++ +ID V ++++A NALLK+LEEPP V F+ + + Sbjct: 132 REIIDGVRYSPVSARYKLYIIDEVHMLSKSAFNALLKTLEEPPSHVKFVFATTEIRKVPV 191 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + L + + + AA GSV + +L Sbjct: 192 TVLSRCQRFDLRRVDAQVLKEHFTRVTALEGADIEGDAAALIARAADGSVRDGLSLL--- 248 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ I+ + QQ+ D L D+ D + + A+A + Sbjct: 249 -DQAIALAAGTVT----------AQQVRDMLGLADRTRVIDLFEAAVS---ARPAEAMDI 294 Query: 292 SGQLEE-ADQIAQIYFSLVKRVHAFSMYNLDRRQMI 326 L I L+ VH NL R +++ Sbjct: 295 LADLHRVGADPVVILQDLLDLVH-----NLTRLKVV 325 >gi|222823495|ref|YP_002575069.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari RM2100] gi|222538717|gb|ACM63818.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari RM2100] Length = 510 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 118/285 (41%), Gaps = 28/285 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G + L + R+ HA LF G +G GK + ++ ++ Sbjct: 5 LAIKYRPKTFDELVGQSTVSISLKYALENNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C+ + + D + + + + ++++I+ + Sbjct: 65 NGPNANPCGKCSQ------CVSSLNGSNIDIIEMDAASHR---------SLEDIQELIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + +++ +ID V + AANALLK+LEEPP V FIL + + +T+ SR Sbjct: 110 VKYAPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRT 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F +S+ + K LEQ KI + + GS+ + +L D+ I Sbjct: 170 QHFRFKQISQQEILKHLEWILEQEKISYEKEALKLIARSGNGSLRDTLTLL----DQAIV 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF 277 + I + L K+++ +L+ ++ F+FL EF Sbjct: 226 YCQNHIQTQKITAMLGFLDPAKIEEFYQAILANEKDKVFEFLKEF 270 >gi|317009270|gb|ADU79850.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori India7] Length = 573 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDFYSI----LLIERFFKI 306 >gi|148552984|ref|YP_001260566.1| DNA polymerase III subunits gamma and tau [Sphingomonas wittichii RW1] gi|148498174|gb|ABQ66428.1| DNA polymerase III, subunits gamma and tau [Sphingomonas wittichii RW1] Length = 582 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 125/322 (38%), Gaps = 36/322 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ GR+ HA L G +G+GK + A + Sbjct: 10 VLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKALNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD P DPC +A D + + + + ++D++R Sbjct: 70 IGPDGQGGP----TIDPCGVCEPCVAIAEGRHIDVVEMDAASHT---------SIDDVRE 116 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + + + +++ +ID V ++++A N LLK+LEEPP V F+ + + T+ Sbjct: 117 IIEAVRYASVSARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITV 176 Query: 178 RSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC ++ + L + + + AA GS + IL D Sbjct: 177 LSRCQRFDLRRITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSIL----D 232 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + I+ + QQ+ D L D+ E + + +A A++ G Sbjct: 233 QAIAHGSGRVE----------AQQVRDMLGLSDRGAVRRLFGEMLKGD--AAAVLASIRG 280 Query: 294 QLEEADQIAQIYFSLVKRVHAF 315 Q + + + L++ HA Sbjct: 281 QYDLGVEPVAMLHGLLETCHAI 302 >gi|74185604|dbj|BAE32694.1| unnamed protein product [Mus musculus] Length = 393 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 42/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + + L + + R++HA LF G +G GK T A + Sbjct: 37 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCE 96 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D + + + + VD+ R +R Sbjct: 97 QGPTPTPCGTCQSCRDLAC----GGPGSIDVIEIDAASHG---------GVDDARDLRER 143 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +++ +ID + NALLK +EEPP V FI + ++ TIRSR Sbjct: 144 AFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRT 203 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L + L +L I + V A GSV ++ +L D+++ Sbjct: 204 HHYPFRLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVL----DQLLG 259 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 D Q AL + +I D + D F + + I +++ Sbjct: 260 GVADGHVSYEQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDL 319 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 + + + + +A D + L +V F L R + Sbjct: 320 LRRMRDLVIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVL 370 >gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae WSM419] gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae WSM419] Length = 625 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 82 YKTTGIDKPTIDLRLP--GEHCQAIMDGRHVDVIEMDAASHT---------GIDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 131 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC +S ++L L + + V AA GS + +L D+ Sbjct: 191 RCQRFDLRRISASDLVGLFSTILGKEGVPFDPEALAMVARAAEGSARDGLSLL----DQA 246 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 I+ + + ++ M +A D+ D I ++ + A Q Sbjct: 247 IAHGGGSVEV----ETVRSMLGLA------DRARIVDLFEHIIKGDVAAALHEFA--AQY 294 Query: 296 EEADQIAQIYFSLVKRVH 313 E + L H Sbjct: 295 EAGANPTVVLTDLADFTH 312 >gi|210134919|ref|YP_002301358.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori P12] gi|210132887|gb|ACJ07878.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori P12] Length = 576 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKSVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEVRLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] Length = 610 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 115/328 (35%), Gaps = 28/328 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + GR+H A L G +G+GK T A Sbjct: 31 VLARKYRPTTFADLIGQEPMVRTLENAFDLGRIHQAYLLTGVRGVGKTTTARILARAFNY 90 Query: 61 N-PDFSKAPV---RMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 P P + D + + D L + + + +D++R Sbjct: 91 ELPAKDGRPAIDKPTIHMDELGVHCQAIIDSRHVDVLEMDAASHT---------GIDDVR 141 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 I +V +ID V +++ A N LLK+LEEPP+ V FI + + T Sbjct: 142 EIIDNARYRPVMARTKVYIIDEVHMLSKAAFNGLLKTLEEPPEHVKFIFATTEIDKVPVT 201 Query: 177 IRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 +RSRC + L L E+ + + AA GS A+ +L Sbjct: 202 VRSRCQRFDLRRIDAGLLASHLRGICEKENVAIEPDALAMIARAAEGSARDALSLLDQ-- 259 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 I L+ M +A D+ D + ++ ++ A L Sbjct: 260 -AIAYGSAHAAGGAIAADDLRLMLGVA------DKARVIDLFETVMAGDVGRA--IALLE 310 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNL 320 Q AQ+ L + H + L Sbjct: 311 DQYNGGADPAQVLLELAEFTHLATRLKL 338 >gi|187933489|ref|YP_001887621.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B str. Eklund 17B] gi|187721642|gb|ACD22863.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B str. Eklund 17B] Length = 546 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 24/268 (8%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L + R+ HA LF G +G GK + A + Sbjct: 6 LYREWRPRTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C K++ D L + N + R + Sbjct: 66 NIQDGEPCNEC------EMCKKINEGLSMDVTELDAASNNGIDRIRDI---------IDD 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 G +++ ++D V ++ A NA LK+LEEPP V+FIL + + TI SRC Sbjct: 111 TKYPPQEGKYKIYILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F +++ ++ L ++ + + D + A G++ ++ IL D Sbjct: 171 QRFDFKRINQKDISDRLRKITESQNVSVDEKSLDLIARVADGAMRDSLSILDQAIAMGDN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIAD 260 + I ++ + EY I + Sbjct: 231 NIKYDDLISILGLVTNEYLFDITNSIVE 258 >gi|25026765|ref|NP_736819.1| DNA polymerase III subunits gamma and tau [Corynebacterium efficiens YS-314] gi|23492044|dbj|BAC17019.1| putative DNA polymerase III gamma subunit [Corynebacterium efficiens YS-314] Length = 780 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 124/360 (34%), Gaps = 41/360 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + LS SGR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFDEVVGQEHVTAPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +CN D L + + VD++R +R Sbjct: 63 QGPTSTPCGVCNSC----VSLAPGGPGNLDVTELDAASHN---------GVDDMRELREK 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + NA+LK +EEPP+ ++FI + ++ TIRSR Sbjct: 110 AHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEPPEHLIFIFATTEPDKVIGTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY------- 230 F L+ + LE+ + D+ V A GS ++ IL Sbjct: 170 HHYPFRLLTPGAMRGLLERTCRAEGVHVDDAVYPLVIRAGGGSPRDSLSILDQLLAGAGP 229 Query: 231 DCDK--------------IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 D +I + I + + + ++ + ++ A D L Sbjct: 230 DGLSYESALPLLGVTDFTLIDAAITALATDDKAGMFATIDRVIEA-GHDPRRFATDLLDR 288 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 I ++ A G ++ AQ+ + L M+ L+ R Sbjct: 289 LRDLMILQTVPEAFDLGLVDAPTDRAQVLTDQAAMFSGNELATL--ASMVNTGLADLRGA 346 >gi|94264278|ref|ZP_01288072.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93455323|gb|EAT05530.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 706 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/355 (20%), Positives = 137/355 (38%), Gaps = 39/355 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L R+ HA+LF G +G+GK TL A + Sbjct: 5 VLARKWRPRTFAEVVGQRPVVRTLQNALRLQRVAHAMLFAGVRGVGKTTLARLMAKALNC 64 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P+ + P C +++ + A D + + N + EIR ++ Sbjct: 65 QEPEPASRPCNQCKS------CQEINAGAAVDLHEIDGASNR---------GIQEIRELK 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + +++++ID V + A NALLK+LEEPP V F+ + I TI S Sbjct: 110 ENIRFLPVSASYKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILS 169 Query: 180 RCLSIKFNSLSENNLYKALEQLKIMGW----DSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ + L Q+ ++ + A GSV + +L D++ Sbjct: 170 RCQRYELTRVAYDELLAFFRQVAAREEVTISEAALAMISREADGSVRDGLSLL----DQV 225 Query: 236 ISSYIDLIHIPRQEYALQKM-----QQIADELLSQDQKIAFDFL---------IEFILKE 281 S I L + Q+A LL+ + A + ++ + Sbjct: 226 FSFADGGIDDDDVRQLLGLVDRRVFAQLARALLAGELGRALEIFDRGQRAGMNLKRFAAD 285 Query: 282 ICKSAKAAALSGQLEEADQIAQI-YFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 + + + A Q+ ++ LV+ + ++ + F+LL K E Sbjct: 286 LLDYFRNLVVCRATAGARQLLELGEQELVELEEIAAAHSPETLLYCFNLLLKGIE 340 >gi|224534688|ref|ZP_03675260.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] gi|224513936|gb|EEF84258.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] Length = 561 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 28/291 (9%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 P L G + + + L ++ +A +F G +G+GK + +A + Sbjct: 10 KKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKNGP 69 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P CN K + S + D + + + N +V +IR+I+ + Sbjct: 70 AVMPCGECNN------CKSIDSDSSLDVIEIDGASNT---------SVQDIRQIKEEIMF 114 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +R+ +ID V ++ +A NALLK++EEPP ++FI + S + TI+SRC Sbjct: 115 PPAISKYRIYIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTESHKLPETIKSRCQHF 174 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240 F LS +Y L+++ I D ++ + GSV A + D+++S Sbjct: 175 SFKLLSLEKIYNMLKKVCFEDHIKYEDEALKWIAYKSGGSVRDAYTLF----DQVVSFTN 230 Query: 241 DLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 I + + + + ++++A +LS+D K L L I Sbjct: 231 SDIKLDQIRSKMGFTNDEFLEKLAVSILSEDVKELICVLDSIFLAGISYEQ 281 >gi|303256850|ref|ZP_07342864.1| DNA polymerase III, subunits gamma and tau [Burkholderiales bacterium 1_1_47] gi|302860341|gb|EFL83418.1| DNA polymerase III, subunits gamma and tau [Burkholderiales bacterium 1_1_47] Length = 693 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 137/348 (39%), Gaps = 36/348 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPHDFSSLLGQDHVVRALTHALTENRLHHAYLFTGTRGVGKTTISRILAKCLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + + D++ + + +D++ Sbjct: 65 VGPDGKGGITAEPCGVC------EACRAIDEDRFVDYIEMDAASTR---------GIDDM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + ++V MID V + A NA+LK+LEEPP+ V FIL + + Sbjct: 110 VSLLERAKYVPTNARFKVYMIDEVHQLTSAAFNAMLKTLEEPPEYVKFILATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY- 230 T+ SRCL SLS ++ + LE+ +I + A GS+ + +L Sbjct: 170 TVLSRCLQFNLKSLSPQLISSHMAELLEKEQISFEKPALRMLASGARGSMRDGLSLLDQA 229 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKE 281 + + S +++ ++ + +A + + D+ A +K+ Sbjct: 230 IAYSAGNVTLESVREMLGTIDSTTLIRLLGALANHEPKEIMKVADEIGARSLSYTQAMKD 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + A++ QL E + ++++ S+++ D Q+ + + Sbjct: 290 LAVLLHRIAMAQQLPEILTDEEPDAPELRQL--ASVFSPDEVQLFYQI 335 >gi|116326905|ref|YP_796625.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332429|ref|YP_802147.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119649|gb|ABJ77692.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126118|gb|ABJ77389.1| DNA polymerase III, gamma and tau subunits [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 487 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 19/235 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + L SG++ HA +F G +G+GK T+ A + Sbjct: 7 VLSRKYRPQIFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P C+ ++ D L + + N ++ IR +R Sbjct: 67 RNPINNEPCNECSS------CTEITQGISSDVLEIDAASNR---------GIENIRELRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + NALLK+LEEPP ++FIL + I TI SR Sbjct: 112 NVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 C F + + L E+L + ++ GSV + + Sbjct: 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226 >gi|328951662|ref|YP_004368997.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] gi|328451986|gb|AEB12887.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] Length = 563 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 131/338 (38%), Gaps = 42/338 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R PV + G E +++ L + R+ A LF G +G+GK T A V Sbjct: 4 LYRRARPVTFDAVVGQEHVKEVLQNAIRTDRLAQAYLFSGPRGVGKTTTARLIAMSVGCQ 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + D L + + N +V+++R +R Sbjct: 64 AAPEARPCGACEN------CLAVRDGRHPDVLEIDAASNN---------SVEDVRELRER 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L +V ++D M+++A NALLK+LEEPP V+FI + + TI SR Sbjct: 109 ILLAPIQSARKVFILDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRT 168 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +F L+E + L+Q+ + V A G++ A IL D++++ Sbjct: 169 QHFRFRRLTEEEIAGKLQQITRAEGLEIAPEALALVARMADGAMRDAESIL----DRLLA 224 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEF---------ILKEIC 283 + + + E AL ++QQ+A+ L + A + + +++ Sbjct: 225 LGKNPVTLADAEAALGLPPQHRIQQLAEALARGAIEQALAEARQLYREGYSARTLTEQVA 284 Query: 284 KSAK-----AAALSGQLEEADQIAQIYFSLVKRVHAFS 316 ++ + L + A AQ+ +L Sbjct: 285 EALRSGLYARLGLGSGPDLAANEAQVIAALSALDEHAE 322 >gi|254464615|ref|ZP_05078026.1| DNA polymerase III delta prime subunit protein [Rhodobacterales bacterium Y4I] gi|206685523|gb|EDZ46005.1| DNA polymerase III delta prime subunit protein [Rhodobacterales bacterium Y4I] Length = 372 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 162/362 (44%), Gaps = 28/362 (7%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 + A P RL G E E+ Y SGR+HH L G QG+GKATL +R A +L P Sbjct: 14 EGAPHPRETLRLIGQEAAERDFLTAYNSGRLHHGWLLTGPQGVGKATLAWRIARFLLATP 73 Query: 63 DFSKA------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P + + DP P ++ + A ++ S + K GK RT I VD++R Sbjct: 74 PAEEGLFGAPPPPQTLDIDPEHPVSHRIQALAEPGLAPITRSYDDK-GKLRTQIVVDDVR 132 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 ++ F L+A G RV+++D D MN +AANALLK LEEPP + +LISH +L T Sbjct: 133 KLNRFFGLSATDGGRRVVIVDAADDMNVSAANALLKMLEEPPARTTILLISHQPSRLLPT 192 Query: 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 IRSRC +++ LS ++ AL Q + + + + A GSV A+++++ KI Sbjct: 193 IRSRCRTLRLGPLSAPDMEAALAQSGVELPQNMENLAAL-AGGSVGAALRLINLGGLKIY 251 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA------ 290 + + ++ Q+ +A+ + F+ L+ + + A+ A Sbjct: 252 AELVQILDSM-PRLDRQRAMALAEAAAQRGAAERFELLLSLTEMALARLARTGATGAPPA 310 Query: 291 -------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 LS + A + + R NLD ++ + K +E Sbjct: 311 LEAAPQEAAMLARLSPDPRKGRAWADLAAEVTARARHGQAVNLDPAALVLDTVFKMQETA 370 Query: 338 DL 339 Sbjct: 371 SR 372 >gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805] gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805] Length = 587 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 109/304 (35%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L SGR+ A LF G +G GK + A + + Sbjct: 11 KYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCLNSE 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGHC------ELCTTIAAGTALDVIEIDAASNT---------GVDNIRDLIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + L + L EQ I V A G + A +L Sbjct: 176 RFDFRRIPLEALERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 D + Q++ + + S + + + + + L+G L + Sbjct: 236 QADAVWDLLGAVPEQELLALVTAMSSGEPVALLEATRTLLDRGRDAGSVLQGLAGILRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|325274405|ref|ZP_08140492.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51] gi|324100440|gb|EGB98199.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51] Length = 310 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 120/308 (38%), Gaps = 35/308 (11%) Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 + G + K L + R+HHA LF G +G+GK T+ A + + P C Sbjct: 1 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTC- 59 Query: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 +++ D + + + K V++ R + + + G ++V Sbjct: 60 -----SVCREIDEGRFVDLIEIDAASRTK---------VEDTRELLDNVQYAPSRGRFKV 105 Query: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 +ID V ++ ++ NALLK+LEEPP V FIL + + +TI SRCL ++S Sbjct: 106 YLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSPER 165 Query: 194 LYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 + + L + + AA GS+ A+ + D+ I+ + Sbjct: 166 VVEHLSHVLAAENVPFEADALWLLGRAADGSMRDAMSL----TDQAIAF-------GEGK 214 Query: 250 YALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLV 309 ++ + L L+E + + ++ + A G A + ++ Sbjct: 215 VLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQG-----PDWAGVLAEML 269 Query: 310 KRVHAFSM 317 +H ++ Sbjct: 270 NVLHRVAI 277 >gi|15611722|ref|NP_223373.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori J99] gi|4155207|gb|AAD06231.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99] Length = 582 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 KTGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|149914152|ref|ZP_01902683.1| hypothetical protein RAZWK3B_19166 [Roseobacter sp. AzwK-3b] gi|149811671|gb|EDM71504.1| hypothetical protein RAZWK3B_19166 [Roseobacter sp. AzwK-3b] Length = 375 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 155/364 (42%), Gaps = 29/364 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P RL G E + + SGR+HH L G +G+GKATL + A +L Sbjct: 13 VEGAPHPRETPRLIGQRAAEGAFLEAFNSGRLHHGWLITGPRGVGKATLAWAIARFLLAT 72 Query: 62 PDFSKAPVR----------MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 PD P +++A+ + +++ S+N KTG+ R I Sbjct: 73 PDPGSDDGGLFGDAAPMPDSLAIPADHPVARRIAAGSDPGLFHITRSVNEKTGRLRDRIV 132 Query: 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP 171 D++R + FL L++ G RV++ID D MN AANALLK LEEPP + + +L+SH Sbjct: 133 ADDVRSLNNFLHLSSTDGGRRVVLIDSADEMNTQAANALLKMLEEPPARTVLLLVSHQPS 192 Query: 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 +L TIRSRC ++ L ++ ALEQ I D+ + + GSV A+++++ Sbjct: 193 RLLPTIRSRCRELRLAPLGAQDMATALEQAGI-APDADATALAELSAGSVGEAVRLINLG 251 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA- 290 + ++ I + +A+ ++ + D L+ + + A+ A Sbjct: 252 GVAMYREIVE-ITATMPRLDRARALGLAEAAATRGAEEKLDLLLGLTDLFLARLARGGAL 310 Query: 291 ----------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAR 334 LS A+ + R NLD ++ + K + Sbjct: 311 GPPPEAVPGESALIARLSPSPHAGRAWAECAQMIGARARHGRAVNLDPAALVLDTVFKIQ 370 Query: 335 ECND 338 + Sbjct: 371 QTAA 374 >gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] Length = 626 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 106/284 (37%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 82 YKTAEIDKPTIDLRVP--GEHCQAIMDGRHVDVIEMDAASHT---------GIDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 131 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-----HY 230 RC +S ++L L + + V AA GS + +L H Sbjct: 191 RCQRFDLRRISASDLVGLFSTILGKEGVPFDPEALAMVARAAEGSARDGLSLLDQAIAHG 250 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + ++ + + + + + ++ D A D Sbjct: 251 GGSVEIETVRSMLGLADRARIVD----LFEHVIKGDVAGALDEF 290 >gi|84683872|ref|ZP_01011775.1| DNA polymerase III subunit delta [Maritimibacter alkaliphilus HTCC2654] gi|84668615|gb|EAQ15082.1| DNA polymerase III subunit delta [Rhodobacterales bacterium HTCC2654] Length = 375 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 156/364 (42%), Gaps = 28/364 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I+ A P + L G E+ Y GR+HHA L G +G+GKATL +R A +L Sbjct: 13 IEGAPHPRETRALVGQAAAEQGFLTAYNGGRLHHAWLISGPRGVGKATLAWRIARFLLAT 72 Query: 62 PDFSKA------PVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 P P + DP P V++ A L N K K I V+E+ Sbjct: 73 PADDGGMFGAPPPPDRLDIDPEHPVVRRSMQMAEPGLFVLRRGPNDKGDKLSADIRVNEV 132 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R++R F L+A+ G RV+++D D MN AANALLK LEEPP+ +L++H +L Sbjct: 133 RKLREFFGLSASDGGRRVVIVDAADEMNTQAANALLKMLEEPPRGATLLLVTHQPSRLLP 192 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TIRSRC ++ + L+ +L +A+E + + A GSV A+++ D KI Sbjct: 193 TIRSRCRELRLSPLAPPDLARAMEAAGELPGPDAEP-LGELAGGSVGEAMRLSQLDGLKI 251 Query: 236 ISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA---- 290 + + H PR Y + +A + +++ I + + + A++ A Sbjct: 252 YQDLVSIFAHAPR--YDRPRAIALAQSAAGAANATRYALILDLIDQFLARLARSGAGHPP 309 Query: 291 --------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L+ A + A+ + R NLD +I + E Sbjct: 310 LIEAAPGEAALFARLAPDAWRARRWAEKAQDVSSRAAHGRAVNLDPAALILDTTFRINET 369 Query: 337 NDLY 340 Y Sbjct: 370 AAAY 373 >gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti 1021] gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium meliloti 1021] Length = 626 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 106/284 (37%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 82 YKTAEIDKPTIDLRVP--GEHCQAIMDGRHVDVIEMDAASHT---------GIDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 131 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-----HY 230 RC +S ++L L + + V AA GS + +L H Sbjct: 191 RCQRFDLRRISASDLVGLFSTILGKEGVPFDPEALAMVARAAEGSARDGLSLLDQAIAHG 250 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + ++ + + + + + ++ D A D Sbjct: 251 GGSVEIETVRSMLGLADRARIVD----LFEHVIKGDVAGALDEF 290 >gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans PD1222] gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus denitrificans PD1222] Length = 592 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 119/330 (36%), Gaps = 32/330 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 10 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKGLNC 69 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD P P ++ D + + + V++IR I Sbjct: 70 TGPDGQGGPTTE--PCGVCEHCVAISEGRHVDVMEMDAASRT---------GVNDIREII 118 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 119 ESVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 178 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L ++ D + AA GS A +L D+ Sbjct: 179 RCQRFDLRRIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLL----DQA 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS + L D+ D + IL+ A A + Sbjct: 235 ISHGAGETTATQVRAMLGLA----------DRGRVLDLF-DMILRGAAAEALAELQAQYA 283 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 + AD +A + L + H S+ + + Sbjct: 284 DGADPMA-VLRDLAEITHWVSIVKITPEAL 312 >gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] Length = 608 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 117/322 (36%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 19 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 78 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 79 IGEDGQGGPTTEPCGKC------EHCTAIMEGRHVDVMEMDAASRT---------GVGDI 123 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I ++ A + +++ +ID V ++ +A NALLK+LEEPP V FI + + Sbjct: 124 REIIDSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPV 183 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L ++ + D + AA GS A +L Sbjct: 184 TVLSRCQRFDLRRIEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLL--- 240 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS Q+ L D+ D L++ IL+ +A Sbjct: 241 -DQAISHGAGETT----------ADQVRAMLGLADRGRVLD-LMDMILRGDAAAALTELS 288 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + E AD +A + L + H Sbjct: 289 AQYAEGADPMA-VLRDLAEITH 309 >gi|330998903|ref|ZP_08322630.1| DNA polymerase III, subunit gamma and tau [Parasutterella excrementihominis YIT 11859] gi|329576117|gb|EGG57636.1| DNA polymerase III, subunit gamma and tau [Parasutterella excrementihominis YIT 11859] Length = 693 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 137/348 (39%), Gaps = 36/348 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKWRPHDFSSLLGQDHVVRALTHALTENRLHHAYLFTGTRGVGKTTISRILAKCLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C + + D++ + + +D++ Sbjct: 65 VGPDGKGGITAEPCGVC------EACRAIDEDRFVDYIEMDAASTR---------GIDDM 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + ++V MID V + A NA+LK+LEEPP+ V FIL + + Sbjct: 110 VSLLERAKYVPTNARFKVYMIDEVHQLTSAAFNAMLKTLEEPPEYVKFILATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY- 230 T+ SRCL SLS ++ + LE+ +I + A GS+ + +L Sbjct: 170 TVLSRCLQFNLKSLSPQLISSHMAELLEKEQISFEKPALRMLASGARGSMRDGLSLLDQA 229 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQKMQQIA-----DELLSQDQKIAFDFLIEFILKE 281 + + S +++ ++ + +A + + D+ A +K+ Sbjct: 230 IAYSAGNVTLESVREMLGTIDSTTLIRLLGALANHEPKEIMKVADEIGARSLSYTQAMKD 289 Query: 282 ICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + A++ QL E + ++++ S+++ D Q+ + + Sbjct: 290 LAVLLHRIAMAQQLPEILTDEEPDAPELRQL--ASVFSPDEVQLFYQI 335 >gi|332041195|gb|EGI77560.1| DNA polymerase III subunits gamma and tau [Hylemonella gracilis ATCC 19624] Length = 688 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 115/311 (36%), Gaps = 33/311 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L+ R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRSFSEMVGQEHVVQALANALTQQRLHHAYLFTGTRGVGKTTVSRVLAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C P + + D+ L + N VDE+ Sbjct: 65 IGPDGQGGITAQPCGTC------PACLDIDAGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QALLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRCL ++ + + L + + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTRVLAAENVAAETGALRLLARAARGSMRDALSL---- 225 Query: 232 CDKIISSY-----IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSA 286 D+ I+ + + ++ D L D + L + A Sbjct: 226 TDQAIAFGGGRLEEAAVRQMLGSADRGHVLRLIDALARGDGLTVVETSEALRLHGLSAPA 285 Query: 287 KAAALSGQLEE 297 +S L+ Sbjct: 286 TLEEMSAVLQR 296 >gi|84495160|ref|ZP_00994279.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649] gi|84384653|gb|EAQ00533.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649] Length = 799 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 131/353 (37%), Gaps = 42/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q +GR++HA LF G +G GK T A + Sbjct: 8 LYRRYRPETFVDVIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTSARILARCLNCE 67 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C + A D + + + + VD+ R +R Sbjct: 68 QGPTPTPCGEC--DSCVALARGGA--GTVDVIEIDAASHG---------GVDDARDLRER 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 S +++ +ID + NALLK +EEPP+ V FI + ++ TIRSR Sbjct: 115 ASYGPAQSRYKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPEKVIGTIRSRT 174 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIK----------- 226 F + L + +E+L K+ FV A GSV ++ Sbjct: 175 HHYPFRLVPPGQLTEYMEKLCVSEKVAVAPGVLSFVVRAGGGSVRDSLSVLDQLIAGSSA 234 Query: 227 ----------ILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +L + +++ + ID A ++++ + L D + + L+E Sbjct: 235 EGLTYESAAALLGFTDSELLDAAIDAFAAGDGAGAFSSIERVIETGL--DPRRYIEDLLE 292 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + I +A S L + ++ AF L R I + Sbjct: 293 RLRDLIVVAAVPDGASAVLRALPP--DQLERMRQQAAAFGPGALSRAADIVNA 343 >gi|282863500|ref|ZP_06272559.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE] gi|282561835|gb|EFB67378.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE] Length = 774 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 118/351 (33%), Gaps = 40/351 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 14 LYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 73 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C C + D + + + + VD+ R +R Sbjct: 74 QGPTPTPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARDLREK 120 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 121 AFFGPASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRT 180 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIK----ILHYDCD 233 F + L L + D V A GSV ++ +L D Sbjct: 181 HHYPFRLVPPGTLRSYLAEVCGKENSPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAGD 240 Query: 234 KIIS-------------SYIDLIHIPRQEYALQKMQQIADELLSQD---QKIAFDFLIEF 277 ++ S +D I ++ D ++ ++ D L Sbjct: 241 DGVTYAMATSLLGYTDGSLLDSIVDAFAAGDGAAAFEVVDRVVEGGNDPRRFVADLLERL 300 Query: 278 ILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + A G + D A + + + F L R + + Sbjct: 301 RDLVILAAVPDAGDKGLI---DAPADVVERMQAQAAVFGAAELSRAADLVN 348 >gi|254779303|ref|YP_003057408.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori B38] gi|254001214|emb|CAX29182.1| DNA polymerase III gamma and tau subunits (DnaX) [Helicobacter pylori B38] Length = 570 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 137/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + + E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYTILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|33862214|ref|NP_893775.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634432|emb|CAE20117.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 579 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 21/227 (9%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--N 61 + + P+ L G E I L Q S ++ A LF G +G GK + +A + + Sbjct: 10 QKYRPLNLDELVGQEFISITLKQALISQKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSS 69 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C Q+A D + + + N V+ IR I Sbjct: 70 KQPTPNPCEKC------ELCIQIAEGNALDIIEIDAASNT---------GVENIREIIDR 114 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 W+V +ID ++ A+NALLK++EEPP++V+FIL + +++TI+SRC Sbjct: 115 ARFAPTQARWKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRC 174 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARA 224 F +S N ++ L + I D + + G + A Sbjct: 175 QKFDFKRISANTIFNNLSAIANKESIKFEDQALKLIAKRSNGGMRDA 221 >gi|229816762|ref|ZP_04447044.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM 20098] gi|229785778|gb|EEP21892.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM 20098] Length = 906 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 41/346 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G E + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQEQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LEQ+ I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEIMGPYLEQICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + +D + + ++ + + L+ Q D E + + K Sbjct: 226 MIGSVD--GVITHDASVALLGFTPETLIGQAVDAVIDGNGEALYDVVQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDL 339 + L+ RV + L DR + +LS + E DL Sbjct: 279 ----DPRRFVEDLLARVRDLMVLTLAGDRAE---SVLSDSAEGEDL 317 >gi|110598224|ref|ZP_01386500.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans DSM 13031] gi|110340139|gb|EAT58638.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans DSM 13031] Length = 402 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 21/282 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSKFADITAQEHITRTIQNSLRMGRLGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +PC + S + + N +VD+IR + Sbjct: 65 QRMMEDPVYLQEVTEPCGECESCRDFDSGTSLNISEFDAASNN---------SVDDIRAL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI Sbjct: 116 RENVRYGPQKGKYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + ++ K L+ + KI + A GS+ A IL D+ Sbjct: 176 SRCQRFNFKRIPLPDIQKQLQTICDAEKITVEGDALQLIGRKAQGSMRDAQSIL----DQ 231 Query: 235 IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 +I+ + H + Q + ++ + + + D ++E Sbjct: 232 VIAFTAENDH--EGSISYQSVAELLNYIDDEHMFGVTDAVLE 271 >gi|317486264|ref|ZP_07945097.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316922510|gb|EFV43763.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 577 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 28/288 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P + G E ++ LS+ ++ A L G +G+GK T+ +A + Sbjct: 6 LAARYRPQTFAEVTGQETVKAILSRAAAEDKVAPAYLLSGTRGVGKTTIARIFAKALNCV 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C +++ D + + + N +D+ RR+R Sbjct: 66 HAPTGEPCNQCEQ------CRRITMGNHVDVVEIDGASNR---------GIDDARRLREA 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++ G ++V +ID + R + NALLK+LEEPP + FIL + + TI SRC Sbjct: 111 IAYAPMEGRYKVFIIDEAHMLTRESFNALLKTLEEPPPRATFILATTEAHKFPITIVSRC 170 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 F ++ E L L + I ++ + A GSV ++ + L D Sbjct: 171 QHFIFKAIPEAELVAHLTRVLNKEGIPFEENAVRLLARRAAGSVRDSMSLLGQTLALGGD 230 Query: 234 KII-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 + +S ++ + QE +++ + L +QD E + + Sbjct: 231 HLTEASTRSVLGLAGQELY----ERLLNALKAQDCLAVAALTQELLER 274 >gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] Length = 626 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 106/284 (37%), Gaps = 25/284 (8%) Query: 1 MIDRAFDPVYNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 ++ R + P L G E + + L+ + +GR+ A + G +G+GK T A + Sbjct: 22 VLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALN 81 Query: 60 QNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P + + D + + + + +D+IR I Sbjct: 82 YKTAEIDKPTIDLRVP--GEHCQAIMDGRHVDVIEMDAASHT---------GIDDIREII 130 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 131 EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 190 Query: 180 RCLSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL-----HY 230 RC +S ++L L + + V AA GS + +L H Sbjct: 191 RCQRFDLRRISASDLVGLFSTILGKEGVPFDPEALAMVARAAEGSARDGLSLLDQAIAHG 250 Query: 231 DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL 274 I + ++ + + + + + ++ D A D Sbjct: 251 GGSVEIETVRSMLGLADRARIVD----LFEHVIKGDVAGALDEF 290 >gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales bacterium HTCC2083] gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae bacterium HTCC2083] Length = 583 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 32/318 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQEAMVRTLKNAFEADRIAQAFVMTGIRGTGKTTTARIIAKGINC 70 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 PD + P P + D + + + V +IR I Sbjct: 71 IGPDGTGGPTTE--PCGVCENCVAIMEGRHVDVMEMDAASRT---------GVGDIREII 119 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + A + +++ +ID V ++ +A NALLK+LEEPP V FI + + T+ S Sbjct: 120 ESVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + ++ L+++ + + AA GS A +L D+ Sbjct: 180 RCQRFDLRRIEPEDMIGMLQRIAAGEHAEIAEDALALITRAAEGSARDATSLL----DQA 235 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 IS ++Q+ L D+ D L + I++ +A Sbjct: 236 ISHGAGETT----------VEQVRAMLGLADRGRVLD-LYQMIMRGDAAAALTELGEQYA 284 Query: 296 EEADQIAQIYFSLVKRVH 313 AD +A + L + H Sbjct: 285 AGADPMA-VLRDLAEITH 301 >gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum NCIB 8327] gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum NCIB 8327] Length = 390 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 19/247 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + GR+ H +F G +G+GK T +A V Sbjct: 5 VIARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 +PC + + A + + N +VD+IR + Sbjct: 65 QRMIEDPKYLKEVTEPCGECESCRDFDAGASLNISEFDAASNN---------SVDDIRLL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI Sbjct: 116 RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + + L+ + I D + A GS+ A IL D+ Sbjct: 176 SRCQRFNFKRIPISEIQRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSIL----DQ 231 Query: 235 IISSYID 241 +I+ ID Sbjct: 232 VIAFAID 238 >gi|325997588|gb|ADZ49796.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 2017] Length = 591 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 ETGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ +S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|72160455|ref|YP_288112.1| DNA polymerase III subunits gamma and tau [Thermobifida fusca YX] gi|71914187|gb|AAZ54089.1| ATPase [Thermobifida fusca YX] Length = 692 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 123/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L Q +GR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAYLFSGPRGCGKTSSARILARSLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 KGPTPDPCGEC--DSCVALAP--DGGGSIDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 ++V +ID + R NALLK +EEPP + F+ + ++ TIRSR Sbjct: 112 AFFAPVNSRYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + N L + L + K+ + V A GS Sbjct: 172 HHYPFRLIPPNTLRELIEEILNEEKVPYDPAALPLVIRAGGGSARDTLSILDQLLAGSDE 231 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+++L Y ++ +D + + + ++ + D + L+E Sbjct: 232 RGITREAAVQLLGYTDSSLLGEMVDALGAGDGAAVFELIDRVVE--GGHDPRRFAADLLE 289 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + +A AL L A + ++ L R I + Sbjct: 290 RVRDLVVLNAVPDALDKGLINVPPDA--VEQMREQASRLGAAQLTRAAEILN 339 >gi|313678825|ref|YP_004056565.1| DNA polymerase III subunits gamma and tau [Mycoplasma bovis PG45] gi|312950809|gb|ADR25404.1| DNA polymerase III, gamma and tau subunit [Mycoplasma bovis PG45] Length = 616 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 52/357 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ- 60 + R + P + G + I + L + ++ HA LF G +G+GK ++ +A + Sbjct: 6 LYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKVSHAYLFCGPRGVGKTSVARIFANLINCY 65 Query: 61 -NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 N D +C + D + + + N VD IR +R Sbjct: 66 HNNDDYTKLCPLCAENENKTI----------DIIEMDAASNN---------GVDSIRELR 106 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + + G +++ +ID V +++ A NALLK+LEEPP +FI + I TI S Sbjct: 107 DKIQHLPSAGNYKIYIIDEVHMLSKGAFNALLKTLEEPPAHAIFIFATTDPQKIPLTILS 166 Query: 180 RCLSIKFNSLSEN----NLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F ++ + + LEQ I + ++ A GS+ A+ I+ D+ Sbjct: 167 RVQRFNFRRMNNDTLVSQIKNILEQEGIRYDEESLPYIARLAAGSMRDALSII----DQA 222 Query: 236 ISSYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 + I Y+ + +I + L + A + I Sbjct: 223 NAYGNGHIRFSDVMYSFGITSNDNLIKIINSLYDGNSAEALSVFNDLKSGGI-------- 274 Query: 291 LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347 Q SL+ + +Y ++ +F +L+ + N L F YAI Sbjct: 275 ---------DPKQFVESLLLIFKDYIIYEKTYKESLFEILT-LDQLNALKFDLGYAI 321 >gi|315453093|ref|YP_004073363.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179] gi|315132145|emb|CBY82773.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179] Length = 489 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 127/324 (39%), Gaps = 38/324 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + Q L G E + K LS GR+ HA LF G +G GK + +A + Sbjct: 2 VLALKYRPKHFQDLVGQESVSKTLSLALEQGRLAHAYLFSGLRGSGKTSSARIFARALQC 61 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C + D + + + N +++IR + Sbjct: 62 EKAPTSTPCDVCAN------CVDALQNKHVDIIEMDGASNR---------RIEDIREVIE 106 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V + + A NALLK+LEEPP +V FIL + + +TI SR Sbjct: 107 QTKYQPSMGAFKIFIIDEVHMLTKEAFNALLKTLEEPPPRVKFILATTDPLKLPATILSR 166 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 F + + L+ + + + + + + GS+ + + Sbjct: 167 TQHFHFKKIPPKAIVAHLQHILSLEGVQYQEGVLEILARSGGGSLRDTLTLTEQAINYSA 226 Query: 232 ---CDKIISSYIDLIHIPRQEYALQKM----QQIADEL---LSQDQKIAFD----FLIEF 277 ++I+ + L+ + Q + ++I D L D ++ D FL E Sbjct: 227 GPLTLEMITRMLGLVDMQVLHDFFQALRDNPERICDSLRLFEEYDPQVVLDEMSLFLKEA 286 Query: 278 ILKEICKSAKAAALSGQLEEADQI 301 +L + A G L +A + Sbjct: 287 LLHKTFPLNLVDAWMGVLAQAKSL 310 >gi|224437201|ref|ZP_03658182.1| DNA polymerase III subunits gamma and tau [Helicobacter cinaedi CCUG 18818] Length = 562 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 131/347 (37%), Gaps = 27/347 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G I + LS S + HA LF G +G GK + +A + Sbjct: 6 LALKYRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFARALECE 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + D + + + + +D+I+++ Sbjct: 66 SGPISTPCGSCAS------CVAALENRHIDIIEMDAASSR---------GIDDIKKLIEQ 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V +++ A NALLK+LEEPP+ V FIL + + +TI SR Sbjct: 111 TKYRPSFGRYKIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRT 170 Query: 182 LSIKFNSLS----ENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----C 232 +F + ++ L + + + + + GS+ + +L Sbjct: 171 QHFRFKQIPHRLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCKN 230 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIA---DELLSQDQKIAFDFLIEFILKEICKSAKAA 289 ++S D++ I + + Q I + +S ++ +++ E IL E+ K Sbjct: 231 HIEVASVSDMLGIVDPQVLKEYFQGILHHQHDKVSGILQVLYEYECEMILDEMMLFLKEK 290 Query: 290 ALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L + + + ++ + N D ++ K +E Sbjct: 291 LLQRDSDFPPLLLDRFARILTESKSLLNLNTDGAFVLLLCAMKMQEA 337 >gi|307637401|gb|ADN79851.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 908] gi|325995993|gb|ADZ51398.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 2018] Length = 591 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 ETGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ +S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|312200643|ref|YP_004020704.1| DNA polymerase III subunits gamma and tau [Frankia sp. EuI1c] gi|311231979|gb|ADP84834.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EuI1c] Length = 833 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 125/358 (34%), Gaps = 53/358 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P ++ G E + L Q +GR+HHA LF G +G GK + A + Sbjct: 5 LYNRYRPATFSQVVGQEHVTSALMQALRTGRLHHAYLFSGPRGCGKTSSARILAASLNCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C+ + + + D + + + VD+ R +R Sbjct: 65 KGPTPDPCGVCDQ------CVSIRTGSSMDVTEIDAASHG---------LVDDARDLRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + A NALLK +EEPP + F+ + +++TIRSR Sbjct: 110 AFFAPASARFKIFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRT 169 Query: 182 LSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 F + L L Q + + V A GSV ++ +L Sbjct: 170 HHYAFRLVPPGVLRDHLASVAAQEGVDVDPAVLPLVVRAGAGSVRDSLSVLDQLLAGAGS 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAF------------------DF 273 D + + L+ + + + D L ++D F D Sbjct: 230 DGLRYDRAVALLGMTDG----VLLDETVDALAARDGATLFTVVDKVVGSGHDPRRFTADL 285 Query: 274 LIEFILKEICKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 L + K+ A G L+ ADQI + + L R + H Sbjct: 286 LDRMRDLIMIKAVPDAVERGLLDAFSADQI----ERMKAQAGRVGPAELSRTADVLHA 339 >gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter antarcticus 238] gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter antarcticus 238] Length = 586 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 111/322 (34%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAANRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 71 IGIDGQGGPTTEPCGKCEN------CVAIMEGRHVDVMEMDAASRT---------GVGDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + ++V +ID V ++ NA NALLK+LEEPP+ V FI + + Sbjct: 116 REIIESVHYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPV 175 Query: 176 TIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L K D + AA GS A +L Sbjct: 176 TVLSRCQRFDLRRIEPEDQIGLLRKIATAEGAEITDDALALITRAAEGSARDAQSLL--- 232 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS Q+ L D+ D + ILK A Sbjct: 233 -DQAISHGAGETS----------ADQVRAMLGLADRGRVLDLF-DMILKGQAADALQELS 280 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 + AD +A I L + H Sbjct: 281 GQYADGADPMA-ILRDLAEIAH 301 >gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] Length = 645 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 109/300 (36%), Gaps = 21/300 (7%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 + P +L G E I ++ SGR+ A LF G +G GK + A + Sbjct: 11 KYRPQRFDQLVGQEAIAATMANALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCTAAA 70 Query: 65 SKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P DPC +A+ D + + + N VD IR + Sbjct: 71 GPTP------DPCGRCELCTTIAAGNALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + +L L + I V A G + A +L Sbjct: 176 RFDFRRIPLESLEGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLLPPPV 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 +D + Q++ Q+A L + + + + +A L+ L + Sbjct: 236 EVDAVWDLLGAVPEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDL 295 >gi|291277272|ref|YP_003517044.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae 12198] gi|290964466|emb|CBG40316.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae 12198] Length = 585 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 27/294 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + + P L G E + K LS R+ HA LF G +G GK + +A + Sbjct: 5 LALKYRPTTFADLIGQESVAKTLSLALEKNRIAHAYLFSGLRGSGKTSSARIFARALQCQ 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 K P C+ Q D + + + + +D+IR + Sbjct: 65 KAPIKDPCNTCDN------CIQSLEGRHFDIIEMDAASSR---------RIDDIRNLIEQ 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + + G +++ +ID V + + A NALLK+LEEPP V FIL + + +TI SR Sbjct: 110 TKYSPSFGRYKIFIIDEVHMLTKEAFNALLKTLEEPPNYVKFILATTDPLKLPATILSRT 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 +F + + + LE+ +I + + + GS+ + + + Y Sbjct: 170 QHFRFKKIPHKLILQHLYNILEKEEISYEKEAIEMIARSGSGSLRDTLTLTDQAISYCNQ 229 Query: 234 KIIS----SYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 I S + +I + + +Q ++L +I ++ E IL E+ Sbjct: 230 DITSAKVTQMLGVIDPSILQNYFEAIQNGDAKILEASLEIFEEYDAEMILDEMM 283 >gi|259415185|ref|ZP_05739107.1| DNA polymerase III subunit delta' [Silicibacter sp. TrichCH4B] gi|259349095|gb|EEW60849.1| DNA polymerase III subunit delta' [Silicibacter sp. TrichCH4B] Length = 373 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 31/364 (8%) Query: 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP 62 + A P RL+GH E + S R+HHA L G +G+GK+TL +R A +L P Sbjct: 14 EGAPHPRETVRLYGHAQAEADFLHAFSSERLHHAWLIMGPRGVGKSTLAWRIARFLLATP 73 Query: 63 DFSK-------APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P + DP P +M + A ++ S N K G+ R I VD+I Sbjct: 74 PVEEDGLFGAPPPPSSLDIDPDHPVSHRMQALAEPGMAAITRSYNDK-GRMRDQIVVDDI 132 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R + F L++ G RV+++D D MN NAANALLK LEEPP + +LISH +L Sbjct: 133 RVLNRFFGLSSAEGGRRVVIVDSADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLP 192 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 TIRSRC +++ L +++ ALEQ + +AA GSV A+++L + K+ Sbjct: 193 TIRSRCRTLRLGPLQPDDMQAALEQAGAQLPEDPTHLAALAA-GSVGAAMRLLSLEGMKL 251 Query: 236 ISSYIDLI-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA---- 290 S + +I +PR + Q+ +A++ ++ F+ ++ I + + A+ A Sbjct: 252 YSELLAIIDSLPRLDR--QRAMALAEKAAARGGAERFELMLTLIDVLLVRLARTGATGQA 309 Query: 291 ---------------LSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 LS +A A + ++ +R NLD ++ + K ++ Sbjct: 310 PMPEAAQNEGAILARLSPNPHKARAWADLAATVTERTRHGQAVNLDPAALVLDTVFKMQD 369 Query: 336 CNDL 339 Sbjct: 370 TASR 373 >gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. ORS278] gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. ORS278] Length = 615 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + +S + +GR+ A + G +G+GK T A + Sbjct: 23 VLARKYRPSSFADLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNY 82 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + D L + + + VD++R+I Sbjct: 83 ELPDGSVKGPTIHMPVLGTHCQAIMESRHMDILEMDAASHT---------GVDDVRQIND 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A NA LK+LEEPP+ F+ + + T+ SR Sbjct: 134 SVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSR 193 Query: 181 CLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL-----HYD 231 C + + L K L + + + AA GSV ++ +L H Sbjct: 194 CQRFDLRRVEADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAIAHSA 253 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 + ++ + + + +A S D AF E Sbjct: 254 GEVRADDVRQMLGLADRTRVIDLFHYLA----SGDIAAAFKEFRE 294 >gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109] gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109] Length = 626 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 116/312 (37%), Gaps = 25/312 (8%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G E I L S R+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCLNSE 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +A+ D + + + N VD IR + Sbjct: 71 GPTPEPCGTC------ELCTTIAAGTALDVIEIDAASNT---------GVDNIRELIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + N L K L EQ I V + G + A +L D ++ Sbjct: 176 RFDFRRIPLNALNKHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLL--DQLSLLPP 233 Query: 239 YIDLIHIPRQEYAL--QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 I+ + A+ Q++ ++ + S + + + A L+G L Sbjct: 234 PIEAAAVWDLLGAVPEQELLELVGAMSSAEPVQLLKATRNLLDRGRDPGAVLQGLAGMLR 293 Query: 297 EADQIAQIYFSL 308 + +A L Sbjct: 294 DLVLMAAAPDRL 305 >gi|213691081|ref|YP_002321667.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522542|gb|ACJ51289.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457137|dbj|BAJ67758.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 923 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 64/349 (18%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+F+ + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + + E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVINHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L DR + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDRAESVLSDTAEAEDMDDLHRQ 323 >gi|312114329|ref|YP_004011925.1| DNA polymerase III subunits gamma and tau [Rhodomicrobium vannielii ATCC 17100] gi|311219458|gb|ADP70826.1| DNA polymerase III, subunits gamma and tau [Rhodomicrobium vannielii ATCC 17100] Length = 574 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 124/347 (35%), Gaps = 24/347 (6%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ A + G +G+GK T A + Sbjct: 24 VLARKYRPQTLDDLIGQDILVRTLRNAFAMDRIAQAYMLTGVRGVGKTTTARILARALNY 83 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D + + + D L + + N +D+IR I Sbjct: 84 ERD-GLPDRPSLDIAELGRHCQAIMDSRHVDVLEMDAASNT---------GIDDIREIIE 133 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +RV +ID V ++++A N LLK+LEEPP V FI + + TI SR Sbjct: 134 AVRYKPAAARYRVFIIDEVHMLSKSAFNGLLKTLEEPPPHVKFIFATTEIRKVPVTILSR 193 Query: 181 CLSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C + L + LE+ DS + AA GSV + +L + Sbjct: 194 CQRFDLRRVEPEVLSAHFARILEKEGYAADDSALALIARAAEGSVRDGLSLLDQALTMAE 253 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-----FILKEICKSA 286 +S +D++ + ++ +++I D + I+ ++ + Sbjct: 254 GRLTAASVLDMLGLSGRDAIFDLLERIFDGDAAGALTALGALNERGADPTLIISDVADAV 313 Query: 287 KAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 A + L A + + + R M + +L K Sbjct: 314 HALSRLKVLPGAYPHDLSADDRARADRLAASLPVPRLAMAWQMLLKG 360 >gi|296533588|ref|ZP_06896155.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis ATCC 49957] gi|296266081|gb|EFH12139.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis ATCC 49957] Length = 444 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 121/320 (37%), Gaps = 33/320 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + R+ HA + G +G+GK T A + Sbjct: 58 VLARKYRPQTFADLIGQDALVRTLRNAFAQNRVAHAFMLTGVRGVGKTTTARIIARALNC 117 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + + + D L L + N VD IR Sbjct: 118 VGPDGNGGP----TADPCGVCAECQAILADRHPDVLELDAASNN---------GVDNIRE 164 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 +R + ++V ++D V ++ A NALLK+LEEPP +V F+ + + +TI Sbjct: 165 LREAVRYRPARARFKVYILDEVHMLSTAAFNALLKTLEEPPPQVKFLFATTEIRKVPATI 224 Query: 178 RSRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ + ++ + AA GSV + +L Sbjct: 225 LSRCQRFDLKRVPQEQLRAHFARIAEAEAVPASEAALAMIARAADGSVRDGLSLLDQAI- 283 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 A + + D L D+ + FD L +I A AA+ Sbjct: 284 ----------AQAAGSAAGVEADLVRDMLGLADRSLLFDLLEAAFRGDIP--AMLAAMDA 331 Query: 294 QLEEADQIAQIYFSLVKRVH 313 E + L++ H Sbjct: 332 GHERGADPGVVLADLLELTH 351 >gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 654 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 33/296 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G I LS S R+ A LF G +G GK + A + + Sbjct: 9 KYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCLSSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C + +A+ + D + + + N VD IR I Sbjct: 69 HPTPIPCGKC------SVCQAIANGSALDVIEIDAASNT---------GVDNIREIIERS 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWD---SKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + ++ + + L+++ +I D V A G + A +L Sbjct: 174 RFDYRRIALDAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLL---------- 223 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 D + + +++ + + +D + I ++ + + G+ Sbjct: 224 --DQLSLLAGTITAERVWDLVGAVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGK 277 >gi|256820706|ref|YP_003141985.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] gi|256582289|gb|ACU93424.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] Length = 569 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 35/272 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + + G + I L + + ALLF G +G+GK T A + + Sbjct: 6 VSARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILAKKINE 65 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + L + N +VD+IR++ Sbjct: 66 QTSGVED-----------------ENDFAFNVFELDAASNN---------SVDDIRKLIE 99 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + G ++V +ID V ++ A NA LK+LEEPP+ +FIL + I+ TI SR Sbjct: 100 QVRIPPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSR 159 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DC 232 C F ++ N++ + L EQ I D + A G++ A+ I Sbjct: 160 CQIFDFKRITINDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSG 219 Query: 233 DKIISSYI-DLIHIPRQEYALQKMQQIADELL 263 +KI +++++ E + I D L Sbjct: 220 EKITRQATSEILNVLDYEVYFKVTDLILDNKL 251 >gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] Length = 583 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 117/320 (36%), Gaps = 36/320 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 9 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKGMNC 68 Query: 61 -NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 PD + P DPC + D + + + N V IR Sbjct: 69 IGPDGNGGPT----TDPCGVCEHCTAIMEGRHVDVMEMDAASNT---------GVANIRE 115 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 I + A + ++V +ID V ++ A NALLK+LEEPP+ V FI + + T+ Sbjct: 116 IIDSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 175 Query: 178 RSRCLSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIKILHYDCD 233 SRC + + L ++ D + AA GS A +L D Sbjct: 176 LSRCQRFDLRRIEPEVMIALLRKIATAETAEITDDALALITRAAEGSARDATSLL----D 231 Query: 234 KIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG 293 + IS +Q+ L D+ D + +L+ +A Sbjct: 232 QAISHGAGETG----------AEQVRAMLGLADRGRVLDLF-DMVLRGDAAAALTELSGQ 280 Query: 294 QLEEADQIAQIYFSLVKRVH 313 + AD +A + L + H Sbjct: 281 YADGADPMA-VLRDLAEITH 299 >gi|45659289|ref|YP_003375.1| DNA polymerase III subunit gamma [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828515|ref|NP_714511.2| DNA polymerase III subunit gamma [Leptospira interrogans serovar Lai str. 56601] gi|45602535|gb|AAS72012.1| DNA polymerase III gamma subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386368|gb|AAN51529.2| DNA polymerase III gamma subunit [Leptospira interrogans serovar Lai str. 56601] Length = 479 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 114/298 (38%), Gaps = 35/298 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + + + L SG++ HA +F G +G+GK T+ A + Sbjct: 7 VLSRKYRPQKFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P CN ++ D L + + N ++ IR +R Sbjct: 67 QNPIDNEPCNECNS------CSEITRGISSDVLEIDAASNR---------GIENIRELRD 111 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G ++V +ID V + + NALLK+LEEPP ++F+L + I TI SR Sbjct: 112 NVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSR 171 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 C F + + L E+L + +V GSV + + D Sbjct: 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWVAKKGDGSVRDMLSFMEQAIVFTD 231 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIAD-----------ELLSQDQKIAFDFLIEFI 278 + ++ +I E+ ++ + D E L Q+ + + FL + I Sbjct: 232 SKLLGAAIRKMIGYHGIEFLTSFIKSLVDPDNHSKSLEIIESLYQEGQDIYKFLWDSI 289 >gi|221640130|ref|YP_002526392.1| DNA polymerase III subunit delta' [Rhodobacter sphaeroides KD131] gi|221160911|gb|ACM01891.1| DNA polymerase III, delta prime subunit [Rhodobacter sphaeroides KD131] Length = 370 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 170/360 (47%), Gaps = 27/360 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 ++ A P Q LFGH E + SGR+HH L G G+GKATL +R A +L Sbjct: 12 VEGAPHPRETQALFGHARAEAEFLATFSSGRLHHGWLITGPLGVGKATLAWRIARFLLAT 71 Query: 62 PD----FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 P F+ P DP P +++++ A L + + K + +T ITV+E+RR Sbjct: 72 PPADGLFAAPPPDSLGIDPDHPVARRVSALAEGRLFLLRRAWDEKAKRLKTQITVEEVRR 131 Query: 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 ++ F +L++ G RV ++DP D MN +AANALLK LEEPP+ V +L+ H +L TI Sbjct: 132 MKAFFALSSADGGRRVAIVDPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTI 191 Query: 178 RSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 RSRC ++ L+ ++ +AL + D + A GS AI++ + D K+ Sbjct: 192 RSRCRELRLAPLAPEDMARALAAAGVEADDPA--ALAELAGGSAGEAIRVANLDGVKLYR 249 Query: 238 SYIDLIH-IPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKA-------- 288 + + L+ +PR + A K+ +AD + + F+ ++ I + + A+A Sbjct: 250 ALVGLLSTLPRLDRA--KLVALADAASGKGAEPQFELMLTLIDLFLARLARAGTLRLLPP 307 Query: 289 ----------AALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 A L+ A A + SL R NLD ++ ++ + E Sbjct: 308 EAVPGEADLIARLAPDARAARLWADLAQSLGNRARRGRAVNLDPAALLMDMVLRIDETAA 367 >gi|261838049|gb|ACX97815.1| gamma and tau subunits of the DNA polymerase III holoenzyme [Helicobacter pylori 51] Length = 571 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 137/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCTQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGVIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae TN] gi|221230735|ref|YP_002504151.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae Br4923] gi|3150103|emb|CAA19155.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae] gi|13093951|emb|CAC31851.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae] gi|219933842|emb|CAR72433.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae Br4923] Length = 611 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPAAFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P +C + C + D + L + + VD+ R +R Sbjct: 63 QGTTATPCGVC--ESCLSLAP--NAPGHIDVVELDAASHG---------GVDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP ++FI + +L TIRSR Sbjct: 110 AFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPDHLIFIFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLY----KALEQLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F LS + + Q ++ D+ V A GS Sbjct: 170 HHYPFRLLSPRTMRALVGRICAQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEG 229 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+K+L +I +D + ++ + D ++ A D L Sbjct: 230 EHVTYQRALKLLGATDVGLIDDAVDALGAHDAAALFGAVESVIDA-GHDPRRFATDLLER 288 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 F + ++ AA G ++ ++ + + ++ L R + H Sbjct: 289 FRDLIVLQAVPDAAARGVVDASE---DVLDRMREQAVRIGPATLTRYAEVVH 337 >gi|51598717|ref|YP_072905.1| DNA polymerase III subunits gamma and tau [Borrelia garinii PBi] gi|51573288|gb|AAU07313.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBi] Length = 560 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 38/342 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF 64 P L G + + + L ++ +A +F G +G+GK + +A + Sbjct: 10 KKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKNGP 69 Query: 65 SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL 124 + P CN K + + + D + + + N +V +IR+I+ + Sbjct: 70 TVMPCGECNN------CKSIENDSSLDVIEIDGASNT---------SVQDIRQIKEEIMF 114 Query: 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 +R+ +ID V ++ +A NALLK++EEPP ++FI + S + TI+SRC Sbjct: 115 PPAISKYRIYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHF 174 Query: 185 KFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKI 235 F LS +Y L+++ I D ++ + GSV A + D Sbjct: 175 SFKLLSLEKIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFTSSDIK 234 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL----------IEFILKEICKS 285 + + + E+ +++++ +LS+D K L +F+L I Sbjct: 235 LDQIRSKMGLTNDEF----LEKLSASILSEDVKELICVLDSIFLSGVSYEQFLLDSIEFF 290 Query: 286 AKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIF 327 +A L ++ + I L K++ F + L+R ++ Sbjct: 291 REALFLKIGIKNFEFIGIKSEDLRKKLAEFDLNYLERIIVVL 332 >gi|172041592|ref|YP_001801306.1| DNA polymerase III subunits gamma and tau [Corynebacterium urealyticum DSM 7109] gi|171852896|emb|CAQ05872.1| DNA polymerase III, gamma and tau subunits [Corynebacterium urealyticum DSM 7109] Length = 1102 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 130/352 (36%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS SGR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D L + + VD++R +R Sbjct: 63 EGPTSTPCGKC--DSCIALAP--GGPGSLDVTELDAASHR---------GVDDMRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV +ID + N LLK +EEPP+ ++FI + +L+TIRSR Sbjct: 110 AFYAPADSRYRVFIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI-- 235 + F L+ ++ L ++ + D+ V A GS ++ I+ Sbjct: 170 HNYPFRLLTPPDMRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGP 229 Query: 236 ----ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI---------LKEI 282 + L+ + + + A+ L +QDQ F + + I ++ Sbjct: 230 EGVTYQRAVALLGVTDS----SLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDL 285 Query: 283 CKSAKAAALSGQLEEA------DQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 + + + +A D AQ +L ++ A L R + + Sbjct: 286 LDRFRDLLVVQAVPDAFERGLVDVPAQEQDALRQQAEALGPATLTRCAAVVN 337 >gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M163/99/10] gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] Length = 602 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 29/287 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 12 VLARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAWMLTGVRGVGKTTTVRILARALNY 71 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 D P + + + D + + + + +D+IR I Sbjct: 72 KTDTVDQPTIDLSTP--GEHCQAIMEGRHVDVIEMDAASHT---------GIDDIREIIE 120 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V +ID V ++ A N LLK+LEEPP V FI + + T+ SR Sbjct: 121 QVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 180 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + L + L ++ KI D+ + A GS ++ I D+ I Sbjct: 181 CQRFDLRRIESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAI 236 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + A++ M +A D+ D + ++ Sbjct: 237 AHGAGSVT----AEAVRSMLGLA------DRARIIDLFEMLMRGDVA 273 >gi|295698516|ref|YP_003603171.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia pediculicola USDA] gi|291157152|gb|ADD79597.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia pediculicola USDA] Length = 377 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 43/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P+ + + G + + K +S G++HH+ LF G G GK T+ ++ + Sbjct: 6 LARKWRPISFKEISGQQHVVKSISNCLSKGKLHHSYLFSGSHGTGKTTIARIFSKGMSCK 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C ++ + D + + + K ++ ++ I Sbjct: 66 LGVTDQPCNKCEN------CIEINHGSFVDLVEIDAASQSK---------IEHMKEILDN 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 L G +++ +ID V ++R + NALLK LEEPP+ + F+L + + STI SRC Sbjct: 111 LQYLPTKGKFKIFLIDEVHMLSRYSFNALLKKLEEPPRHIKFLLATTNPEKLPSTIVSRC 170 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI----LHYDCD 233 L K ++LSE + K LE+ K+ S R + + GS+ A+ I + Sbjct: 171 LHFKLDALSEKEISKRLEEVFSYEKVDHDMSSRKLIAKLSGGSLRDALNISEQVISIGKG 230 Query: 234 KIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 KI + I D++ IP ++Y Q M+ I + FLIE K L Sbjct: 231 KISTDLISDIVGIPNEDYPFQIMRSIVKNNFKKMM-----FLIEQFSKR--SDNWEGLLM 283 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQM------IFHLLSKARECNDLY 340 G L +I I SL + YN DR+++ + ++LS +DLY Sbjct: 284 GLLSFIHKI--IVASLTQFHDE---YN-DRKKLLKFEENVKNILSLIVSLDDLY 331 >gi|109947487|ref|YP_664715.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis str. Sheeba] gi|109714708|emb|CAJ99716.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis str. Sheeba] Length = 576 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EAGPKAMPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPTTILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ +S + + + GS+ + +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVYYEESALEKLAHSGQGSLRDTLTLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ K + + E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEAKLQERYEILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDTYSI----LLIERFFKI 306 >gi|317010938|gb|ADU84685.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori SouthAfrica7] Length = 594 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 137/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EKGPKAVPCDTCAQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ + +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVHYEASALEKLAHSGQGSLRDTLTLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ K + + E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEAKLQERYEILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDAYSI----LLIERFFKI 306 >gi|293364064|ref|ZP_06610800.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris A21JP2] gi|292552554|gb|EFF41328.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris A21JP2] Length = 827 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 136/353 (38%), Gaps = 40/353 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E I L S ++ HA +F G +G+GK ++ +A + Sbjct: 6 LYRKYRPSSFDEVRGQEHIIVTLKNIISSRKIGHAYVFSGPRGVGKTSVARIFANVLNCM 65 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 D + C +Q+ + D + + + N VDEIR ++ Sbjct: 66 HDENIT-------RACDDCFRQIKT--SIDVVEMDAASNN---------GVDEIRDLKEK 107 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + G +++ +ID V +++ A NALLK+LEEPP +FIL + I TI SR Sbjct: 108 VEHLPTMGRYKIYIIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQKIPLTILSRA 167 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + N L K LE I + ++ A G + A+ I D+ + Sbjct: 168 QRFNFRRIPTNILAKTLEDVLEAEAINYEKNAISYIARLAAGGLRDALSI----ADQAAA 223 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 + I + Y+ + + +I + + K + I L Sbjct: 224 YGLGKIRLVDIMYSFGITSNENLIEIINHSYKNNAKEIIQLFAQIRDGGIDPIQFVQGLI 283 Query: 293 GQLEEA--------DQIAQIYF-SLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 L++ + ++ L+K ++ Y L+ Q +++LL + Sbjct: 284 NVLKDWIILYKTKDASLLEVVQLDLLKTLNITLDYALEYTQNLYNLLKDLTKA 336 >gi|313141235|ref|ZP_07803428.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] gi|313130266|gb|EFR47883.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis MIT 98-5491] Length = 573 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 139/352 (39%), Gaps = 34/352 (9%) Query: 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP 68 + L G E + + LS S R+ HA LF G +G GK + +A + P Sbjct: 1 MDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFARALQCEKGPKAKP 60 Query: 69 VRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT 128 +C + D + L + + K +D+IR + N Sbjct: 61 CGVCA----NCIAANPHKMRHIDIIELDGASSRK---------IDDIRDLIEQTKYHPNM 107 Query: 129 GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 G +++ +ID V + + A NALLK+LEEPP+ V FIL + + +TI SR +F Sbjct: 108 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR 167 Query: 189 LSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY-----DCDKIISSY 239 +SE N+++ L+ + I D + + + GS+ + +L + + S Sbjct: 168 ISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITADSC 227 Query: 240 IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL-------IEFILKEICKSAKAAALS 292 +++ + Q + + +E+ +D++ + E +L E+ K L Sbjct: 228 ANMLGLINP----QSLNMLFEEIFKKDKESLLKHIEGFSEYECEMLLDEMAIFLKEKLLR 283 Query: 293 G-QLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRD 343 G + I +F ++ + D ++ + K E + D Sbjct: 284 GEDTRYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKMLEALKIQEID 335 >gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] gi|153797705|gb|EDN80125.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] Length = 967 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 25/246 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P ++ G E + + L + R+ HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASH--ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C +++A+ D + + + + VD+ R +R Sbjct: 65 QGPTDTPCGQCES------CRELATGGPGSLDVVEIDAASHG---------GVDDARDLR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 + +++ +ID + NALLK +EEPP+ V F+ + ++ TIRS Sbjct: 110 ERATFAPVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + L L + I + V A GSV + +L D++ Sbjct: 170 RTHHYPFRLVPPDVLGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVL----DQL 225 Query: 236 ISSYID 241 ++ ID Sbjct: 226 MAGAID 231 >gi|108563127|ref|YP_627443.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori HPAG1] gi|107836900|gb|ABF84769.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori HPAG1] Length = 572 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITE----------GKVAEMLGAIDRSVLEDFFQSLINQDEVRLKERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|325474698|gb|EGC77884.1| DNA polymerase III [Treponema denticola F0402] Length = 468 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 28/292 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + L G E + L + +G++ HA LF G +G GK + A + Sbjct: 5 VTATRRRPQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAKVLNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C +++ + + D + + + N +V+++R+I+ Sbjct: 65 AEGPRPTPCGHCTS------CEEITAGSCLDVIEIDGASNT---------SVNDVRQIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + N+ +++ +ID V ++ +A NALLK++EEPP V+FI + + +TI+SR Sbjct: 110 EILFPPNSNRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSR 169 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F +S L +AL +L I D ++ A GSV A + D++ Sbjct: 170 CQQFNFKLVSIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLF----DQVA 225 Query: 237 SS-----YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEIC 283 + + IH + + ++ ++++ + A L + I Sbjct: 226 AFSDGHITFEKIHEKLGLTGVDSINKLVSACVAKNGQEALSILDGILQGGIS 277 >gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] Length = 597 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 109/304 (35%), Gaps = 21/304 (6%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P +L G + I LS S R+ A LF G +G GK + A + + Sbjct: 11 KYRPQRFDQLVGQDVIAATLSHALRSDRIAPAYLFSGPRGTGKTSSARILARSLNCLSSD 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C +++ D + + + N VD IR + Sbjct: 71 TPTPEPCGTC------ELCTTISAGTALDVIEIDAASNT---------GVDNIRDLIERS 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 W+V ++D ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 116 RFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 F + L L EQ I V A G + A +L Sbjct: 176 RFDFRRIPLEALEAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLLPAPI 235 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEA 298 + + Q++ +A+ L + + + + + A L+ L + Sbjct: 236 KAEAVWELLGAVPEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDL 295 Query: 299 DQIA 302 +A Sbjct: 296 VLMA 299 >gi|296453325|ref|YP_003660468.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum subsp. longum JDM301] gi|296182756|gb|ADG99637.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum subsp. longum JDM301] Length = 936 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 64/349 (18%), Positives = 129/349 (36%), Gaps = 38/349 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + + G + + L + G++ HA LF G +G GK + A V Sbjct: 5 LYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECES------CKDLATGGPGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 R F + + + LE + I A GS+ + +L D++ Sbjct: 170 RTHHYPFRLVPQEVMGPYLETICDKEGIRPEPGVLKLAMRAGGGSMRDTLSVL----DQL 225 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 + ++ + + A+ + + L+ + + E + I K Sbjct: 226 MVGSVE--GVITHDAAVALLGFTPEALIGEAVDAVINHNGEALYGVIQKVVVGGF----- 278 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNL--DRRQMIFHLLSKARECNDLYFR 342 + L+ RV + L D + + ++A + +DL+ + Sbjct: 279 ----DPRRFVEDLLARVRDLLVLTLAGDCAESVLSDTAEAEDMDDLHRQ 323 >gi|163842075|ref|YP_001626480.1| DNA polymerase III subunits gamma and tau [Renibacterium salmoninarum ATCC 33209] gi|162955551|gb|ABY25066.1| DNA polymerase III subunit gamma/tau [Renibacterium salmoninarum ATCC 33209] Length = 812 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 117/340 (34%), Gaps = 42/340 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L R++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QSPTDTPCGSC--DSCVELA--TGGPGSLDVIEIDAASHG---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPEKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L L+ Q K+ V A GSV Sbjct: 172 HHYPFRLVPPEPLMAYLQLLCDQEKVPVAPGVLSLVVRAGGGSVRDSLSVLDQLMAGAGA 231 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+ +L Y ++ +D + + + +I L D + + L+E Sbjct: 232 QGLDYELAVSLLGYTHASLLDDVVDALAASDAATVFRAVDRIIQTGL--DPRRFVEDLLE 289 Query: 277 FILKEICKSAKAAALSGQLEE--ADQIAQIYFSLVKRVHA 314 I A + L DQIA++ + A Sbjct: 290 RFRDLIIVQAMPESAQAILRGMPEDQIARMQTQSTQLGRA 329 >gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] Length = 610 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 32/330 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L + +GR+ A + G +G+GK T A + Sbjct: 23 VLARKYRPSTFEDLVGQEPMVQTLENAFETGRIAQAWMLTGVRGVGKTTTARILARGLNY 82 Query: 61 N-PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 P P + + + D + + + + + +IR I Sbjct: 83 EVPGEVDRPTVQLTQEGTH--CRAIMGGRHVDVIEMDAASHT---------GIGDIREII 131 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 T ++V +ID V ++ A N LLK+LEEPP+ V FI + + T+ S Sbjct: 132 DASRYRPATARYKVYIIDEVHMLSNAAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLS 191 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 RC + + L L ++ +I D + A GS ++ +L D+ Sbjct: 192 RCQRFDLRRIDQAKLVGLLRRISDAEEIQISDEALLLIARAGEGSARDSLSLL----DQA 247 Query: 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQL 295 ++ P + L++M +A D+ D + + ++ L Q Sbjct: 248 MARA----SGPMEADDLRQMLGLA------DRARVIDLFEHVMAGRVAEA--MDELQAQY 295 Query: 296 EEADQIAQIYFSLVKRVHAFSMYNLDRRQM 325 E A + L H + + + Sbjct: 296 EVGADPAIVLTDLADFTHLVTRVKVAPKAA 325 >gi|227484858|ref|ZP_03915174.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227237218|gb|EEI87233.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 560 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 121/284 (42%), Gaps = 28/284 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +++ G + + L + HA LF GE+G GK + +A + Sbjct: 5 LYRQYRPKVFEQVLGQDKVINVLKNQIKNKNFSHAYLFAGERGCGKTSAAKIFAKAINCL 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 +P C + + D + + + N +D+IR +R Sbjct: 65 NPKDGSPCLECEN------CRAIEEETSLDVVEMDAASNR---------RIDDIRNLRDN 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + R A NALLK +EEPP+ ++FIL + I TI SR Sbjct: 110 VIYPPANLKYKVYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRV 169 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 +FN + + + + L+ + + D + A G++ A+ IL D+++S Sbjct: 170 QKFEFNKIDSSKIKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSIL----DQVLS 225 Query: 238 SYIDLIHIPRQEYAL-----QKMQQIADELLSQDQKIAFDFLIE 276 + E+ L +K+ ++ ++ +DQ+ + + L++ Sbjct: 226 FNKKEFMLKDVEFILGSVGFEKINKLVTSIIVKDQRQSLNDLLD 269 >gi|225872170|ref|YP_002753625.1| DNA polymerase III, subunits gamma and tau [Acidobacterium capsulatum ATCC 51196] gi|225792771|gb|ACO32861.1| DNA polymerase III, subunits gamma and tau [Acidobacterium capsulatum ATCC 51196] Length = 698 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 28/325 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G E + + L GR+ H +F G +GIGK T+ A + Sbjct: 5 VLARKYRPQRFSDVAGQEHVTRTLLNALAQGRIAHGYIFSGHRGIGKTTIARILAMALNC 64 Query: 61 NPDFSK--APVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 + P+PC +++ D L + + N +DEIR Sbjct: 65 RTPIGSTTGSPQRPTPEPCGVCESCEEIRLSNAVDVLEIDAATNR---------GIDEIR 115 Query: 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 +R + +++ ++D + A NALLK+LEEPP V+F++ + I T Sbjct: 116 ELREAARYRPSRDRYKIYILDEAHQITDAAFNALLKTLEEPPDHVVFMMATTEPENIPQT 175 Query: 177 IRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC 232 IRSRC F+++ +++ L Q I+ D+ + A GS+ A+ I+ Sbjct: 176 IRSRCQHFSFHAVKFDDILAQLRAIATQENIVAEDAALALLAEAGDGSMRDALSIM---- 231 Query: 233 DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 D+ I+S P + + EL+ F+ L+E I + +A L+ Sbjct: 232 DQAIASARLENGQPHLDA------EAIRELMGSVPNTVFERLLEAISEN-QSAAVLEELN 284 Query: 293 GQLEEADQIAQIYFSLVKRVHAFSM 317 L + Q+ V+ + M Sbjct: 285 RLLNAGNSPVQLARQFVRYLRNTIM 309 >gi|254421036|ref|ZP_05034760.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas sp. BAL3] gi|196187213|gb|EDX82189.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas sp. BAL3] Length = 623 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 22/270 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + L G E + + L+ + +GR+ HA + G +G+GK T A + Sbjct: 74 VLARKYRPRTFEDLIGQEAMVRTLTNAFSTGRIAHAFMLTGVRGVGKTTTARLLARALNN 133 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P + + D + + + + V++IR I Sbjct: 134 ETESIDRPSLTLTAHGRHDAA--IMAGQHMDVMEMDAASHT---------GVNDIRDILE 182 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + ++V ++D V ++ A NALLK+LEEPP FI + + TI SR Sbjct: 183 SVRYAPVEARYKVYVLDEVHMLSTQAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSR 242 Query: 181 CLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI- 235 C + L L E+ + + AA GSV + +L + Sbjct: 243 CQRFDLRRVEPEILIGHLGRIAEREGMKIEQDALALISRAAEGSVRDGLSLLDQALVQAE 302 Query: 236 ------ISSYIDLIHIPRQEYALQKMQQIA 259 + D++ + + + + + Sbjct: 303 RGEMVKTETVRDMLGLADRSQTIALFESVM 332 >gi|300790720|ref|YP_003771011.1| DNA polymerase III subunits gamma/tau [Amycolatopsis mediterranei U32] gi|299800234|gb|ADJ50609.1| DNA polymerase III subunit gamma/tau [Amycolatopsis mediterranei U32] Length = 730 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 103/287 (35%), Gaps = 42/287 (14%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + L +GR++HA LF G +G GK + A + Sbjct: 5 LYRKYRPATFAEVVGQEHVTEPLRTALSAGRINHAYLFSGPRGCGKTSSARIMARSLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P CN K +A D L + + VD+ R +R Sbjct: 65 KGPTPDPCGECNS------CKALAPEGPGSVDVTELDAASHG---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +RV +ID + NALLK +EEPP+ V+FI + +L+TIRS Sbjct: 110 DKAFYAPAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHVIFIFATTEPDKVLTTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVAR------------ 223 R F + +++ LE+ + + V A GS Sbjct: 170 RTHHYPFRLIPPSSMRNLLERNIAAEGVEVEPAVYPLVIRAGGGSARDTQSVLDQLLAGA 229 Query: 224 ---------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADE 261 A+ +L +I +D + ++++ + Sbjct: 230 GPEGVSYSRAVALLGVTDVALIDDMVDALSAEDSATVFGTVEKLTEA 276 >gi|227876482|ref|ZP_03994594.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|227843023|gb|EEJ53220.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] Length = 725 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 27/289 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNCV 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + N VD+ R +R Sbjct: 65 EGPTPTPCGKC--DSCRDLA--TGGSGSLDVVEIDAASNG---------GVDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L L L + D A GSV ++ IL D++++ Sbjct: 172 HHYPFRLVAPEILRDYLADLCHREGVKVEDGVLGLAVRAGGGSVRDSLSIL----DQLMA 227 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFILK 280 + I + AL +Q + D L+ A+ + I Sbjct: 228 GEAEPILHYDRAVALLGYTDSGLLQGLVDALVDGCGADAYGVVDRMIQT 276 >gi|269302914|gb|ACZ33014.1| DNA polymerase III, subunits gamma and tau [Chlamydophila pneumoniae LPCoLN] Length = 442 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 29/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NP 62 R + P + + G + L R HA LF G +G GK TL A + + Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALIFNRAAHAYLFSGIRGTGKTTLARILAKALNCVHL 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C K++AS + D L + + + +++IR+I + Sbjct: 71 SEDGEPCNQCFS------CKEIASGSSLDVLEIDGASHR---------GIEDIRQINETV 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 116 LFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + E + + L + I + AA GS+ A + Y +IS Sbjct: 176 KMHLQRIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDY----VISL 231 Query: 239 YIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + AL Q + + +L +D A + +F+ Sbjct: 232 FPKSLSPDTVAQALGFASQDSLRTLDNAILQRDYATALGIVTDFL 276 >gi|313680933|ref|YP_004058672.1| DNA polymerase III subunits gamma/tau [Oceanithermus profundus DSM 14977] gi|313153648|gb|ADR37499.1| DNA polymerase III, subunits gamma and tau [Oceanithermus profundus DSM 14977] Length = 615 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 111/303 (36%), Gaps = 24/303 (7%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R P + G E ++ L R+ HA LF G +G+GK T A V Sbjct: 7 LYRRARPATFDAVVGQEHVKDVLKSAIQKDRLAHAYLFSGPRGVGKTTTARLIAMSVGCA 66 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + D + + + N +V+++R +R Sbjct: 67 AEPENRPCGECEN------CRMVREDRHPDVVEIDAASNN---------SVEDVRELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + L +VI++D M+++A NALLK+LEEPP+ V+FI + + +TI SR Sbjct: 112 ILLAPLVAPRKVIILDEAHMMSKSAFNALLKTLEEPPEHVIFIFATTEPERMPATILSRT 171 Query: 182 LSIKFNSLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F LSE + LE + + G++ A IL D D Sbjct: 172 QHFRFRRLSEEEIAGKLAAVLEAEGRRAEPEALRLIARMSGGAMRDAESILDRLLALDVD 231 Query: 234 KIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS 292 I + + +P E + + + A E A AL Sbjct: 232 PITRQAAEEALGLPPAERVAAVAAALDSGEVDRAVAEAQRLFSEGYSARTLTEQLAQALQ 291 Query: 293 GQL 295 L Sbjct: 292 AGL 294 >gi|15617964|ref|NP_224248.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae CWL029] gi|16753004|ref|NP_445277.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae AR39] gi|33241379|ref|NP_876320.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae TW-183] gi|4376294|gb|AAD18193.1| DNA Polymerase III Gamma and Tau [Chlamydophila pneumoniae CWL029] gi|7189650|gb|AAF38540.1| DNA polymerase III, gamma subunit [Chlamydophila pneumoniae AR39] gi|33235887|gb|AAP97977.1| DNA polymerase III (gamma and tau subunits) dnaX [Chlamydophila pneumoniae TW-183] Length = 442 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 29/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NP 62 R + P + + G + L R HA LF G +G GK TL A + + Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLARILAKALNCVHL 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C K++AS + D L + + + +++IR+I + Sbjct: 71 SEDGEPCNQCFS------CKEIASGSSLDVLEIDGASHR---------GIEDIRQINETV 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 116 LFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + E + + L + I + AA GS+ A + Y +IS Sbjct: 176 KMHLQRIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDY----VISL 231 Query: 239 YIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + AL Q + + +L +D A + +F+ Sbjct: 232 FPKSLSPDTVAQALGFASQDSLRTLDNAILQRDYATALGIVTDFL 276 >gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] Length = 537 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 120/306 (39%), Gaps = 28/306 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 4 IYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINCL 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 P C + + D + + + N +D+IR +R Sbjct: 64 DLQDGNPCNKCEN------CQSSLEESTLDIVEMDAASNR---------RIDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F ++ ++ L L D + + A G++ A+ IL + + Sbjct: 169 QRYEFKMINSKDISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKE 228 Query: 234 KIISSYI-DLIHIPRQEYALQKMQQI----ADELLSQDQKIAFDFLIEFILKEICKSAKA 288 I I D++ I + + + I A E+L I+ + +E ++ E+ + Sbjct: 229 NITKQDINDILGIVDNKGIFKLVNSIIKKDATEVLGNLYTISHNKPVENVMDELLNHFRN 288 Query: 289 AALSGQ 294 LS Sbjct: 289 LLLSKN 294 >gi|316934062|ref|YP_004109044.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris DX-1] gi|315601776|gb|ADU44311.1| DNA polymerase III subunit delta' [Rhodopseudomonas palustris DX-1] Length = 351 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 9/335 (2%) Query: 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK 66 P L+GH E+ L Y GR+ HA L G QGIGKATL +R A VL + D Sbjct: 19 HPRETTELYGHHAAEQALLGAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHRDPQS 78 Query: 67 APVRMCNP---DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS 123 V+ DP P + +A+ A L L S+N K G R VITVDE R F Sbjct: 79 DAVQGAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDK-GVLRNVITVDESRETISFFG 137 Query: 124 LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLS 183 TA WRV ++D VD +N N+ANALLK +EEPPQ+ LF+L+S+A L TI+SRC Sbjct: 138 ATAAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARTLPTIQSRCRK 197 Query: 184 IKFNSLSENNLYKALEQLKIMGWDS-KRDFVKIAAYGSVARAIKILHYDCDKIISSYIDL 242 + L+ ++ A + D + A+ GSVARA+ ++ + + L Sbjct: 198 LMLRPLATADVIAAAADAAGLDRDDPQLGEAAAASEGSVARALMLMGGGALTLQQTTTAL 257 Query: 243 I-HIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQI 301 + +P + + + + D + D+ ++ + + + + + +L ++ Sbjct: 258 LDSLPNVDP--RALHALGDAIGGTDRAT-LQAFVDGVDRWVAGKLRTPDPNAELPRLARL 314 Query: 302 AQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 A+++ + + YNL+R+ ++F + E Sbjct: 315 AEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEA 349 >gi|38232882|ref|NP_938649.1| DNA polymerase III subunits gamma and tau [Corynebacterium diphtheriae NCTC 13129] gi|38199140|emb|CAE48764.1| DNA polymerase III subunit gamma/tau [Corynebacterium diphtheriae] Length = 707 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 29/292 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + + LS SGR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA-LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P CN + + D L + N +VD++R +R Sbjct: 63 EGPTSTPCGKCNS-----CISLAPNGPGNLDVTELDAASNR---------SVDDMRELRD 108 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 +R+ +ID + R+ ANALLK +EEPP ++FI + IL TIRSR Sbjct: 109 RAMYAPAESRYRIFIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSR 168 Query: 181 CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 F L+ ++ LE+ + DS V A GS + IL D++I Sbjct: 169 THHYPFRLLTPQSMRGLLERTVASEHVAVEDSVYPLVIRAGGGSPRDTLSIL----DQLI 224 Query: 237 SSY------IDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI 282 + +L + + D L D F + + I + Sbjct: 225 AGAGPDGLDYNLARMLLGATDDTLIDTTIDALAGNDNAALFQVVDDAIEAGL 276 >gi|306817441|ref|ZP_07451186.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus mulieris ATCC 35239] gi|304649882|gb|EFM47162.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus mulieris ATCC 35239] Length = 725 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 27/289 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L +GR++HA LF G +G GK T A + Sbjct: 5 LYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + N VD+ R +R Sbjct: 65 EGPTPTPCGKC--DSCRDLA--TGGSGSLDVVEIDAASNG---------GVDDARELRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 112 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L L L + D A GSV ++ IL D++++ Sbjct: 172 HHYPFRLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSIL----DQLMA 227 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFILK 280 + I + AL +Q + D L+ A+ + I Sbjct: 228 GEAEPILHYDRAVALLGYTDSGLLQGLVDALVDGCGADAYGVVDRMIQT 276 >gi|268318150|ref|YP_003291869.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus DSM 4252] gi|262335684|gb|ACY49481.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus DSM 4252] Length = 610 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 98/261 (37%), Gaps = 22/261 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + R + P + L E + + L R+ HA LF G +G+GK T A + Sbjct: 8 VAARKYRPQLFRELVAQEHVTETLKNALRLNRLGHAYLFSGPRGVGKTTAARLLAKAINC 67 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 + R + +PC + + + N K V+++R + Sbjct: 68 QTPLEE---REDHAEPCRRCEACVAFEEGRSLNVFEIDAASNNK---------VEDVREL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + + +V +ID V ++ A NALLK+LEEPP LFI + +L TI Sbjct: 116 RETVRVPPQGARKKVYIIDEVHMLSNAAFNALLKTLEEPPPHALFIFATTEPHKVLPTIL 175 Query: 179 SRCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + L ++ + D + G++ A+ D+ Sbjct: 176 SRCQRFDFRRIPVEAIVARLREICVAEGVEADDESLMLLARKGDGALRDALSAF----DQ 231 Query: 235 IISSYIDLIHIPRQEYALQKM 255 +S + AL + Sbjct: 232 AVSLCGTTLRYAELAQALGVV 252 >gi|307700496|ref|ZP_07637532.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris FB024-16] gi|307614303|gb|EFN93536.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris FB024-16] Length = 724 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 27/289 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + K L +GR++HA LF G +G GK T A + Sbjct: 4 LYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNCA 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + N VD+ R +R Sbjct: 64 EGPTPTPCGKC--DSCRDLA--TGGSGSLDVVEIDAASNG---------GVDDARELRER 110 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ ++D + NALLK +EEPP+ + FI + ++ TIRSR Sbjct: 111 ATFAPVRDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRT 170 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F ++ L L L + D A GSV ++ IL D++++ Sbjct: 171 HHYPFRLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSIL----DQLMA 226 Query: 238 SYIDLIHIPRQEYAL------QKMQQIADELLSQDQKIAFDFLIEFILK 280 + I + AL +Q + D L+ A+ + I Sbjct: 227 GEAEPILHYDRAVALLGYTDSGLLQGLVDALVDGCGADAYGVVDRMIQT 275 >gi|239815313|ref|YP_002944223.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus S110] gi|239801890|gb|ACS18957.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus S110] Length = 620 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 134/353 (37%), Gaps = 42/353 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R F P + G + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 NP-----DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P +C K + S D+ L + N VDE+ Sbjct: 65 QGPDGQGGITATPCGVCQA------CKDIDSGRFVDYTELDAASNR---------GVDEV 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 + + G ++V MID V + A NA+LK+LEEPP+ + F+L + + Sbjct: 110 QSLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 Query: 176 TIRSRCLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY- 230 T+ SRCL ++ + + L+ ++ + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLTGVLQAEQVPAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 231 ----DCDKIISSYIDLIHIPRQEYALQKMQQIA----------DELLSQDQKIAFDFLIE 276 + + + + ++ + + + ++ +A E L +D A L E Sbjct: 230 IAFGNGELLEAGVRQMLGSVDRGHVFKLIEALALGDGRTVVDTSEALRRDGMSAASTLEE 289 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + + A A+ + E AD S+ D Q+++ L Sbjct: 290 -MTAVLQAMAVLQAVPSRAESADSATDP--DAADTARLASLMPADETQLLYSL 339 >gi|91788139|ref|YP_549091.1| DNA polymerase III subunits gamma and tau [Polaromonas sp. JS666] gi|91697364|gb|ABE44193.1| DNA polymerase III, subunits gamma and tau [Polaromonas sp. JS666] Length = 610 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 130/351 (37%), Gaps = 40/351 (11%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P + G + + L + R+HHA LF G +G+GK T+ A + Sbjct: 5 VLARKYRPRNFSEMVGQSHVVQALGNALSTRRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 D + P +C + S D+ L + N VDEI Sbjct: 65 TGVDGQGDITAEPCGVCQA------CIDIDSGRFVDYTELDAASNR---------GVDEI 109 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 ++ G ++V MID V + A NA+LK+LEEPP+ + F+L + + + Sbjct: 110 AQLLEQAVYKPVVGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPA 169 Query: 176 TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI---- 227 T+ SRCL ++ + + L Q + + AA GS+ A+ + Sbjct: 170 TVLSRCLQFNLRPMAPETVLEHLAQVLGTENVPAEPQALRLLARAARGSMRDALSLTDQA 229 Query: 228 LHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAK 287 + + +++ + + + ++ D L D K + L + ++ Sbjct: 230 IAFGSGQLLEA---SVRTMLGSVDRSYVFRLLDALARGDGKTVVETSEALRLNGLSAAST 286 Query: 288 AAALSGQLEEADQIAQIYFS---------LVKRVHAFSMYNLDRRQMIFHL 329 ++ L+ + + + + D Q+++ L Sbjct: 287 LEEMTAVLQRMAVLQAVPDRGGVDDADPEIAETARLAQTLPADETQLLYSL 337 >gi|317014129|gb|ADU81565.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori Gambia94/24] Length = 579 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 ETGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TEGVLEEMMLFLKAKLLSPDSYSI----LLIERFFKI 306 >gi|145219538|ref|YP_001130247.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris vibrioformis DSM 265] gi|145205702|gb|ABP36745.1| DNA polymerase III, subunits gamma and tau [Chlorobium phaeovibrioides DSM 265] Length = 612 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 95/243 (39%), Gaps = 19/243 (7%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 +I R + P + E I + + R+ H +F G +G+GK T +A + Sbjct: 5 VIARKYRPAKFADITAQEHITRTIQNSLRMERVGHGYIFSGLRGVGKTTAARVFAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPF--VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 A +PC + + + + N +VD+IR + Sbjct: 65 QRMIEDADWLRDVTEPCGECESCRDFDAGTSMNIAEFDAASNN---------SVDDIRTL 115 Query: 119 RYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIR 178 R + G +RV +ID V ++ A NA LK+LEEPP +FI + I +TI Sbjct: 116 RDNVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 Query: 179 SRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 SRC F + + + L E I V A GS+ A IL D+ Sbjct: 176 SRCQRFNFKRIPLDAIQTQLQGICEAEGIKVDADALQLVSRKAQGSMRDAQSIL----DQ 231 Query: 235 IIS 237 +I+ Sbjct: 232 VIA 234 >gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] Length = 623 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 114/324 (35%), Gaps = 29/324 (8%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + L+ + + R+ A + G +G+GK T A + Sbjct: 32 VLARKYRPQTFDDLIGQGAMVRTLANAFSANRIPQAWMLTGVRGVGKTTTARILARGLNY 91 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + + + D L + + + +D++R I Sbjct: 92 VRTGQPDTGPTVSMPELGQHCQAIMESRHMDVLEMDAASHT---------GIDDVRGIID 142 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + + ++V ++D V ++ A NA LK+LEEPP F+ + + TI SR Sbjct: 143 GIRYAPVSARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSR 202 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C + + L L+++ + D V AA GSV A+ +L D+ I Sbjct: 203 CQRFDLRRVEADVLSAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLL----DQAI 258 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + D L D+ D + +I A A + Q + Sbjct: 259 AHGAGAVTAAGVR----------DMLGLADRSRIVDLFEAAMRGDIP--AAFAEIRAQYD 306 Query: 297 EADQIAQIYFSLVKRVHAFSMYNL 320 A + L H + L Sbjct: 307 AGADPAVVLSDLAGFTHLVTRLKL 330 >gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] Length = 537 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 120/310 (38%), Gaps = 36/310 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 I R + P +++G + I L + + HA +F G +G GK + +A + Sbjct: 4 IYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINCL 63 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C + + D + + + N +D+IR +R Sbjct: 64 DLQNGNPCNKCEN------CQSSLEESTLDIVEMDAASNR---------RIDDIRELRDK 108 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + ++V +ID + NALLK +EEPP+ ++FIL + I TI SRC Sbjct: 109 VIYPPTKLKYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRC 168 Query: 182 LSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY----DCD 233 +F ++ ++ L L D + + A G++ A+ IL + + Sbjct: 169 QRYEFKMINSKDISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKE 228 Query: 234 KIISSYI-DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFL--------IEFILKEICK 284 I I D++ I + + ++ + ++ +D L +E ++ E+ Sbjct: 229 NITKQDINDILGIVDN----KGIFKLVNSIIKKDATDVLGNLYTISHNKPVENVMDELLN 284 Query: 285 SAKAAALSGQ 294 + LS Sbjct: 285 HFRNLLLSKN 294 >gi|15645339|ref|NP_207511.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 26695] gi|2313841|gb|AAD07767.1| DNA polymerase III gamma and tau subunits (dnaX) [Helicobacter pylori 26695] Length = 578 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ + P + L G E + K LS + R+ +A LF G +G GK + +A ++ Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 P C + ++ D + + + N +D++R + Sbjct: 63 EEGPKAVPCDTCIQ------CQSALNNHHIDIIEMDGASNR---------GIDDVRNLIE 107 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + G +++ +ID V A NALLK+LEEPP V F+L + + + +TI SR Sbjct: 108 QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167 Query: 181 CLSIKFNSLSENNLYKA----LEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 +F + EN++ LE+ ++ S + + + GS+ I +L ++ I Sbjct: 168 TQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLL----EQAI 223 Query: 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLE 296 + + I ++A+ L + D+ + DF I ++ + + A+ E Sbjct: 224 NYCDNAITES----------KVAEMLGAIDRSVLEDFFQSLINQDEARLKERYAILENYE 273 Query: 297 EADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKA 333 + ++ L ++ + Y++ ++ K Sbjct: 274 TESVLEEMMLFLKAKLLSPDFYSI----LLIERFFKI 306 >gi|330837779|ref|YP_004412420.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides DSM 17374] gi|329749682|gb|AEC03038.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides DSM 17374] Length = 623 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 123/287 (42%), Gaps = 28/287 (9%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 + P + + G + +S R+ HA LF G +G+GK + A + Sbjct: 5 VTATRRRPQTFEDMAGQDFFVSTISNAIKQKRIAHAYLFSGPRGVGKTSSARILAKALNC 64 Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120 + P +C+ K++ + D + + + N +V++IR I+ Sbjct: 65 EQGPTAHPCGVCSN------CKEITAGNSTDVIEIDGASNT---------SVNDIRAIKD 109 Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 + +++ +ID V ++ +A NALLK++EEPP+ ++FI + + + +TIRSR Sbjct: 110 EVMFPPQKCRYKIYIIDEVHMLSTSAFNALLKTIEEPPEYIIFIFATTETQKVPATIRSR 169 Query: 181 CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 C F + + K L + + ++ + GS+ A + D+I+ Sbjct: 170 CQQFHFRLFTMETIVKLLTEAAAETDVQADHDALLWIARESTGSMRDAYTLF----DQIV 225 Query: 237 SSYIDLIHIP--RQEYALQKMQQIADELLS-QDQKIAF--DFLIEFI 278 S I + + + + ++ + + +LS Q+ A DFL E + Sbjct: 226 SFSHGHITLASIQDKLGVSGVESLNNVVLSIQEGTTARTDDFLSELL 272 >gi|15835577|ref|NP_300101.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae J138] gi|8978415|dbj|BAA98252.1| DNA polymerase III gamma and tau [Chlamydophila pneumoniae J138] Length = 442 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 29/285 (10%) Query: 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-NP 62 R + P + + G + L R HA LF G +G GK TL A + + Sbjct: 11 RKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLARILAKALNCVHL 70 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 P C K++AS + D L + + + +++IR+I + Sbjct: 71 SEDGEPCNQCFS------CKEIASGSSLDVLEIDGASHR---------GIEDIRQINETV 115 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 T +++ +ID V + + A NALLK+LEEPPQ V F + I TI SRC Sbjct: 116 LFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHRIPGTILSRCQ 175 Query: 183 SIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + + E + + L + I + AA GS+ A + Y +IS Sbjct: 176 KMHLQRIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDY----VISL 231 Query: 239 YIDLIHIPRQEYALQKMQQ-----IADELLSQDQKIAFDFLIEFI 278 + + AL Q + + +L +D A + +F+ Sbjct: 232 FPKSLSPDTVAQALGFASQDSLRTLDNAILQRDYATALGIVTDFL 276 >gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM 43247] gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis DSM 43247] Length = 774 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 125/354 (35%), Gaps = 44/354 (12%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + LS +GR++HA LF G +G GK + A + Sbjct: 3 LYRTYRPATFADVVGQEHVTDPLSHALDAGRINHAYLFSGPRGCGKTSSARILARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C S D + L + + VD+ R +R Sbjct: 63 QGPTSTPCGEC----VSCVALAPGGPGNLDVIELDAASHG---------GVDDTRELRDR 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RV ++D + NALLK +EEPP+ ++F+ + +L TIRSR Sbjct: 110 AFYAPAESRYRVFIVDEAHMVTNAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRT 169 Query: 182 LSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F L+ + LE Q + V A GS Sbjct: 170 HHYPFRLLAPPVMRGLLERICAQEHVTVAPEVYPLVIRAGGGSPRDSLSILDQLLAGADD 229 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A+ +L +I ID + ++++ D ++ A D L Sbjct: 230 RGVTYDRALALLGVTDIALIDDTIDALATGDGATLFGTVEKVVDA-GHDPRRFAVDLLER 288 Query: 277 FILKEICKSAKAAALSGQLEE-ADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHL 329 + ++ AA G +E DQ+A+ + +++ +L R + H Sbjct: 289 LRDLILLQAVPDAAERGLVEAPGDQLAR----MNRQIETLGAASLTRFAELVHA 338 >gi|166368134|ref|YP_001660407.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa NIES-843] gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa NIES-843] Length = 654 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 33/296 (11%) Query: 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ--NP 62 + P L G I LS S R+ A LF G +G GK + A + + Sbjct: 9 KYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCLSSD 68 Query: 63 DFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL 122 + P C + +A+ + D + + + N VD IR I Sbjct: 69 HPTPIPCGKC------SVCQAIANGSALDVIEIDAASNT---------GVDNIREIIERS 113 Query: 123 SLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCL 182 ++V +ID ++ A NALLK+LEEPP +V+F+L + +L TI SRC Sbjct: 114 QFAPVQCRYKVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ 173 Query: 183 SIKFNSLSENNLYKALEQL-KIMGWD---SKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 + ++ + + L+++ +I D V A G + A +L Sbjct: 174 RFDYRRIALDAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLL---------- 223 Query: 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ 294 D + + +++ + + +D + I ++ + + G+ Sbjct: 224 --DQLSLLAGTITAERVWDLVGAVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGK 277 >gi|307328803|ref|ZP_07607973.1| DNA polymerase III, subunits gamma and tau [Streptomyces violaceusniger Tu 4113] gi|306885468|gb|EFN16484.1| DNA polymerase III, subunits gamma and tau [Streptomyces violaceusniger Tu 4113] Length = 473 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 122/352 (34%), Gaps = 42/352 (11%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G E + L Q + R++HA LF G +G GK T A + Sbjct: 36 LYRRYRPETFAEVIGQEHVTGPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCE 95 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + AP C C + D + + + + VD+ R +R Sbjct: 96 KGPTPAPCGECQS--CQDLAR--NGPGSIDVIEIDAASHG---------GVDDARELREK 142 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 + +++ +ID + NALLK +EEPPQ + FI + ++ TIRSR Sbjct: 143 AFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPQHLKFIFATTEPEKVIGTIRSRT 202 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVAR-------------- 223 F + L + L + I D V A GSV Sbjct: 203 HHYPFRLVPPGTLREYLGEVCGREAIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAD 262 Query: 224 -------AIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE 276 A +L Y ++ S +D A + + ++ + + ++ D L Sbjct: 263 DGVTYAMATSLLGYTDGSLLDSIVDAFAATDGAAAFEVVNRVIEG-GNDPRRFVADLLER 321 Query: 277 FILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFH 328 I + AA G + D A + + + F L R + + Sbjct: 322 LRDLVILAAVPDAAEKGLI---DAPADVVERMQAQASVFGGAELSRAADLVN 370 >gi|300933818|ref|ZP_07149074.1| DNA polymerase III subunits gamma and tau [Corynebacterium resistens DSM 45100] Length = 895 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 27/289 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + LS SGR++HA LF G +G GK + A + Sbjct: 3 LYRKYRPSTFAEVVGQAHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARIMARSLNCV 62 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + V+++R +R Sbjct: 63 EGPTSTPCGKC--DSC--LALGPGGAGHLDVTEIDAATHN---------GVEDMRELRER 109 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +RVI+ID ++++ NALLK +EEPP+ ++FI + +L+TIRSR Sbjct: 110 AFFAPAESRYRVIIIDEAHMISQSGFNALLKIVEEPPEHLIFIFATTEPEKMLATIRSRT 169 Query: 182 LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHY-----DC 232 + F L+ ++ LE + DS V A GS ++ I+ Sbjct: 170 HNYPFRLLTPPDMRGLLESVVSGEGVPVEDSVYPLVIRAGGGSPRDSLSIMDQLLAGAGP 229 Query: 233 DKI-ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK 280 D + + ++ + + ++ +A QDQ F + E I Sbjct: 230 DGVTYERAVGVLGMTDASLIDRAVESLAQ----QDQAGLFTVVDEVIDA 274 >gi|283782639|ref|YP_003373393.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis 409-05] gi|283441569|gb|ADB14035.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis 409-05] Length = 801 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 109/289 (37%), Gaps = 31/289 (10%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P + G + + LS+ G++ HA LF G +G GK + A + Sbjct: 5 LYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGKTSSARILARCINCE 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIR 119 + P C K +A+ D + + + + VD+ R +R Sbjct: 65 KGPTSHPCGECQS------CKDLATGGAGSIDVVEIDAASHN---------GVDDARELR 109 Query: 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRS 179 +++ ++D + + NALLK +EEPP+ V+FI + ++ TIRS Sbjct: 110 ERAGFAPARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRS 169 Query: 180 RCLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHY----- 230 R F + + LE + I+ V A GS+ + +L Sbjct: 170 RTHHYPFRLVPPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGA 229 Query: 231 -DCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFI 278 D + S + L+ + + D+L++ D +D + I Sbjct: 230 VDGSISLDSAVALLGFTPN----SLISEFIDDLINHDGASIYDVVRRVI 274 >gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative [Octadecabacter antarcticus 307] gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative [Octadecabacter antarcticus 307] Length = 590 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 114/322 (35%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 71 IGIDGQGGPTTEPCGTCEN------CAAIMEGRHVDVMEMDAASRT---------GVGDI 115 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I + A + ++V +ID V ++ NA NALLK+LEEPP+ V FI + + Sbjct: 116 REIIESVHYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPV 175 Query: 176 TIRSRCLSIKFNSLSENN----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 T+ SRC + + L K + K D + AA GS A +L Sbjct: 176 TVLSRCQRFDLRRIEPEDQIGLLRKIAKAEKAEITDDALALITRAAEGSARDAQSLL--- 232 Query: 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL 291 D+ IS Q+ L D+ D + ILK A Sbjct: 233 -DQAISHGAGETT----------ADQVRAMLGLADRGRVLDLF-DMILKGRAADALHELS 280 Query: 292 SGQLEEADQIAQIYFSLVKRVH 313 S + AD +A I L + H Sbjct: 281 SQYADGADPMA-ILRDLAEIAH 301 >gi|152964436|ref|YP_001360220.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] gi|151358953|gb|ABS01956.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] Length = 712 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 115/308 (37%), Gaps = 29/308 (9%) Query: 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 + R + P +++ G E + L Q GR+ HA LF G +G GK T A + Sbjct: 5 LYRRYRPETFEQVIGQEHVTAPLMQALSKGRVTHAYLFSGPRGCGKTTSARILARCLNCA 64 Query: 62 PDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF 121 + P C D C D + + + + VD+ R +R Sbjct: 65 QGPTPTPCGEC--DSCVDLAN--GGPGSIDVVEIDAASHN---------GVDDARDLRER 111 Query: 122 LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRC 181 +S ++V ++D ++ NALLK++EEPP V F+ + +L+TIRSR Sbjct: 112 VSFAPARDRFKVYILDEAHMVSPQGFNALLKTVEEPPPHVKFVFATTEPDKVLTTIRSRT 171 Query: 182 LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIIS 237 F + L L +L + V A GSV + +L D++I+ Sbjct: 172 HHYPFRLVPPGQLTAYLAELAEREGVRIGKGVLPLVVRAGGGSVRDTLSVL----DQLIA 227 Query: 238 SYID-------LIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAA 290 D + + +A + + + L + D F + + A Sbjct: 228 GAGDEGVTYDIAVSLLGYTHA-SLLDDVVEALAAGDGATVFRAVERVVDTGQEPRRFADD 286 Query: 291 LSGQLEEA 298 L +L + Sbjct: 287 LLQRLRDL 294 >gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] Length = 625 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 40/322 (12%) Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 ++ R + P L G + + + L + + R+ A + G +G GK T A + Sbjct: 36 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 95 Query: 61 -----NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 + P C + D + + + V +I Sbjct: 96 IGEDGQGGPTTEPCGKC------EHCTAIMEGRHVDVMEMDAASRT---------GVGDI 140 Query: 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILS 175 R I ++ A + +++ +ID V ++ +A NALLK+LEEPP V FI