BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit
delta' [Candidatus Liberibacter asiaticus str. psy62]
(347 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 347
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60
MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ
Sbjct: 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60
Query: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120
NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY
Sbjct: 61 NPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY 120
Query: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180
FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR
Sbjct: 121 FLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180
Query: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240
CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI
Sbjct: 181 CLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYI 240
Query: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300
DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ
Sbjct: 241 DLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300
Query: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347
IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI
Sbjct: 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECNDLYFRDFYAI 347
>537021.9.peg.472_1
Length = 369
Score = 53.5 bits (127), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 31/244 (12%)
Query: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73
+ G + + K L+ + SGR+ + + G +GIGK T A + ++ ++ A + +
Sbjct: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTT----ARIIARSLNYKTAHIDVPT 56
Query: 74 ------PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127
+ C ++ +H D + L + + R +I D+I Y+ ++A
Sbjct: 57 VEFEGFGEHCQAIIR--GNHV--DVVELDAASHTSIDDVREII--DQI----YYKPISAR 106
Query: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187
+RV ++D V ++ A N LLK+LEEPP V FI + I T+ SRC +
Sbjct: 107 ---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163
Query: 188 SLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSY 239
+S +L K L++ I + A+ GS + +L DKI++S
Sbjct: 164 RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSS 223
Query: 240 IDLI 243
+ L+
Sbjct: 224 VRLM 227
>gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 396
Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 258 IADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQ 300
+ D+L+++D K FD I + LK+ SGQLEE+ +
Sbjct: 97 VVDDLIAKDTKGYFDIAIVYALKK--------YFSGQLEESSK 131
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 30 SGRMHHALLFEGEQGIGKATLGFRYAGH------VLQNPDFSKAPVRMC----------- 72
GR+ H +L G G GK L AG + DF + V +
Sbjct: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA 236
Query: 73 -NPDPCSPFVKQMASHALHDFLYLS 96
N PC FV ++ + H + L
Sbjct: 237 KNNSPCIVFVDEIDAVGRHRGIGLG 261
>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 380
Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 79 PFVKQMASHALHDFLYLSYSLNPKT-----GKWRTVITVDEIRRIRY 120
PF Q A+ A+ D LSY L KT ++ V V ++RIRY
Sbjct: 290 PFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAV-RVKRIRY 335
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76
M H + G G+GK T+ A V+ N ++ PV + P
Sbjct: 1 MAHIFVLIGASGVGKTTI----AKQVVLNSEYLVMPVGVTTRRP 40
>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 150
Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 58 VLQNPDFSKAPVRMCNPDPCSPF 80
++QN K P+ + NP P +P
Sbjct: 14 LMQNVTVPKLPISLNNPTPIAPI 36
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 23.1 bits (48), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148
L + LY S L+ G W + + + LSL WR I + N
Sbjct: 323 LENALYASTILSFTQGFW---VIGKSSEKYSWSLSLATIARIWRAGCI-----IRSQILN 374
Query: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRS 179
++KSL E P + I S + TI S
Sbjct: 375 DIVKSLTEDPSSTNLLNIPSISEKVKKTIPS 405
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,865
Number of Sequences: 1233
Number of extensions: 8683
Number of successful extensions: 45
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 10
length of query: 347
length of database: 328,796
effective HSP length: 75
effective length of query: 272
effective length of database: 236,321
effective search space: 64279312
effective search space used: 64279312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)