HHsearch alignment for GI: 254780218 and conserved domain: COG0125
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=395.85 Aligned_cols=207 Identities=41% Similarity=0.685 Sum_probs=195.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88868998678887979999999999997798199987788984410011001244454101345677788999997763
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVEN 81 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~ 81 (225)
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-~~~~~~~e~lLfaadR~~h~~~ 79 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-EKLSPKAEALLFAADRAQHLEE 79 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 996299997888898899999999999982980799868999869999999973886-6788899999999999999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 56554234525872354243100010034442457765444203889841156652034877644321111100000000
Q gi|254780218|r 82 VIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDY 161 (225)
Q Consensus 82 ~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~ 161 (225)
T Consensus 80 ~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-----~~r 154 (208)
T COG0125 80 VIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-----RDR 154 (208)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCC-----CCH
T ss_conf 978876289999987831378885353059998999999976547899988999948889999999832776-----551
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 21128899999999999999978994999818978899999999999999986
Q gi|254780218|r 162 FERKDVMIHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVATNILNIVWELVQK 214 (225)
Q Consensus 162 ~E~~~~~~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~~I~~~i~~~l~k 214 (225)
T Consensus 155 ~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~~ 207 (208)
T COG0125 155 FEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLGL 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 56677899999999999998618771899989999799999999999987435