HHsearch alignment for GI: 254780218 and conserved domain: COG0125

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=100.00  E-value=0  Score=395.85  Aligned_cols=207  Identities=41%  Similarity=0.685  Sum_probs=195.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             88868998678887979999999999997798199987788984410011001244454101345677788999997763
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVEN   81 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~   81 (225)
T Consensus         1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-~~~~~~~e~lLfaadR~~h~~~   79 (208)
T COG0125           1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-EKLSPKAEALLFAADRAQHLEE   79 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             996299997888898899999999999982980799868999869999999973886-6788899999999999999999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             56554234525872354243100010034442457765444203889841156652034877644321111100000000
Q gi|254780218|r   82 VIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDY  161 (225)
Q Consensus        82 ~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~  161 (225)
T Consensus        80 ~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-----~~r  154 (208)
T COG0125          80 VIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-----RDR  154 (208)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCC-----CCH
T ss_conf             978876289999987831378885353059998999999976547899988999948889999999832776-----551


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             21128899999999999999978994999818978899999999999999986
Q gi|254780218|r  162 FERKDVMIHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVATNILNIVWELVQK  214 (225)
Q Consensus       162 ~E~~~~~~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~~I~~~i~~~l~k  214 (225)
T Consensus       155 ~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~~  207 (208)
T COG0125         155 FEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLGL  207 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             56677899999999999998618771899989999799999999999987435