HHsearch alignment for GI: 254780218 and conserved domain: COG1102
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism].
Probab=99.13 E-value=1e-09 Score=78.23 Aligned_cols=168 Identities=23% Similarity=0.257 Sum_probs=94.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHH---HHHHHHHHHHHH
Q ss_conf 68998678887979999999999997798199987788984410011001244454101345677---788999997763
Q gi|254780218|r 5 LFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAI---VFAAARLDHVEN 81 (225)
Q Consensus 5 ~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~l---Lfaadr~~~~~~ 81 (225)
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vsa----G~iFR~~A~e~gms--l~ef~~~AE~~p~iD~~iD~rq~--- 68 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLKLVSA----GTIFREMARERGMS--LEEFSRYAEEDPEIDKEIDRRQK--- 68 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHH---CCCEEEC----CHHHHHHHHHCCCC--HHHHHHHHHCCCHHHHHHHHHHH---
T ss_conf 979961799997027999999982---9715621----27999999983999--99999987519216699889999---
Q ss_pred HHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 56554234525872354243100010034442457765444203889841156652034877644321111100000000
Q gi|254780218|r 82 VIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDY 161 (225)
Q Consensus 82 ~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~ 161 (225)
T Consensus 69 --e~a~-~~nvVle-----grLA-------------~Wi~k-----~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~ 122 (179)
T COG1102 69 --ELAK-EGNVVLE-----GRLA-------------GWIVR-----EYADLKIWLKAPLEVRAERIAKREGIDVDEALAE 122 (179)
T ss_pred --HHHH-CCCEEEH-----HHHH-------------HHHHC-----CCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf --9987-2895870-----0457-------------88733-----5654688885759999999998608989999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCE----EEECC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 211288999999999999999789949----99818-978899999999999999986
Q gi|254780218|r 162 FERKDVMIHEKRRQIFLDIARNQPDRC----HIVDS-AHSFQSVATNILNIVWELVQK 214 (225)
Q Consensus 162 ~E~~~~~~~~kv~~~y~~la~~~~~~~----~~IDa-~~~~eei~~~I~~~i~~~l~k 214 (225)
T Consensus 123 ~~~RE~se~k----RY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 123 TVEREESEKK----RYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred HHHHHHHHHH----HHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9998899999----99998587876663677887536678889999999998742134