HHsearch alignment for GI: 254780218 and conserved domain: COG1102

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism].
Probab=99.13  E-value=1e-09  Score=78.23  Aligned_cols=168  Identities=23%  Similarity=0.257  Sum_probs=94.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHH---HHHHHHHHHHHH
Q ss_conf             68998678887979999999999997798199987788984410011001244454101345677---788999997763
Q gi|254780218|r    5 LFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAI---VFAAARLDHVEN   81 (225)
Q Consensus         5 ~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~l---Lfaadr~~~~~~   81 (225)
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vsa----G~iFR~~A~e~gms--l~ef~~~AE~~p~iD~~iD~rq~---   68 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHL---GLKLVSA----GTIFREMARERGMS--LEEFSRYAEEDPEIDKEIDRRQK---   68 (179)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHH---CCCEEEC----CHHHHHHHHHCCCC--HHHHHHHHHCCCHHHHHHHHHHH---
T ss_conf             979961799997027999999982---9715621----27999999983999--99999987519216699889999---


Q ss_pred             HHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             56554234525872354243100010034442457765444203889841156652034877644321111100000000
Q gi|254780218|r   82 VIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDY  161 (225)
Q Consensus        82 ~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~  161 (225)
T Consensus        69 --e~a~-~~nvVle-----grLA-------------~Wi~k-----~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~  122 (179)
T COG1102          69 --ELAK-EGNVVLE-----GRLA-------------GWIVR-----EYADLKIWLKAPLEVRAERIAKREGIDVDEALAE  122 (179)
T ss_pred             --HHHH-CCCEEEH-----HHHH-------------HHHHC-----CCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             --9987-2895870-----0457-------------88733-----5654688885759999999998608989999999


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCE----EEECC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             211288999999999999999789949----99818-978899999999999999986
Q gi|254780218|r  162 FERKDVMIHEKRRQIFLDIARNQPDRC----HIVDS-AHSFQSVATNILNIVWELVQK  214 (225)
Q Consensus       162 ~E~~~~~~~~kv~~~y~~la~~~~~~~----~~IDa-~~~~eei~~~I~~~i~~~l~k  214 (225)
T Consensus       123 ~~~RE~se~k----RY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~  176 (179)
T COG1102         123 TVEREESEKK----RYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK  176 (179)
T ss_pred             HHHHHHHHHH----HHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9998899999----99998587876663677887536678889999999998742134