HHsearch alignment for GI: 254780218 and conserved domain: COG1419

Probab=96.33  E-value=0.033  Score=33.45  Aligned_cols=117  Identities=18%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHH---HHHHHHH
Q ss_conf             8886899867888797999999999999--7798199987788984410011001244454101345677---7889999
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISLLKRFLQ--RKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAI---VFAAARL   76 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~--~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~l---Lfaadr~   76 (225)
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-tDtYRIGA~----------EQLk~Ya~im~vp~~vv~~~  269 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-TDTYRIGAV----------EQLKTYADIMGVPLEVVYSP  269 (407)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCHHHHH----------HHHHHHHHHHCCCEEEECCH
T ss_conf             4685799989988758879999999997532576068997-144115289----------99999999869955996399


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHH
Q ss_conf             97763565542345258723542431000100344424577654442038898411566520348
Q gi|254780218|r   77 DHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVD  141 (225)
Q Consensus        77 ~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e  141 (225)
T Consensus       270 ~el~~ai~-~l~~~d~ILVDTa---------Grs~~D~~~i~el~~~~~~~--~~i~~~Lvlsat  322 (407)
T COG1419         270 KELAEAIE-ALRDCDVILVDTA---------GRSQYDKEKIEELKELIDVS--HSIEVYLVLSAT  322 (407)
T ss_pred             HHHHHHHH-HHHCCCEEEEECC---------CCCCCCHHHHHHHHHHHHCC--CCCEEEEEEECC
T ss_conf             99999999-8531888999689---------98833789999999997035--662179998457