HHsearch alignment for GI: 254780218 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=95.41 E-value=0.1 Score=30.46 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8886899867888797999999999999779819998778
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREP 41 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP 41 (225)
T Consensus 99 ~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~ 138 (258)
T PRK09183 99 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 138 (258)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 5588679989999868999999999999879939997899