HHsearch alignment for GI: 254780218 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=95.42 E-value=0.041 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEECC
Q ss_conf 8868998678887979999999999997798---19998778
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFLQRKNY---DVHVTREP 41 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~---~v~~~~eP 41 (225)
T Consensus 88 ~nqVvii~GeTGsGKTTQiPq~~---le~g~g~~~~I~~TQP 126 (1295)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKIC---LELGRGIKGLIGHTQP 126 (1295)
T ss_pred HCCEEEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEECCC
T ss_conf 79969997689998788999999---9627999998997796