HHsearch alignment for GI: 254780218 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.17  E-value=0.0019  Score=40.88  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCC-CCCC--HHHHC--CCCCCCCCCHHHHHHHHHHH
Q ss_conf             8868998678887979999999999997----79819998778898-4410--01100--12444541013456777889
Q gi|254780218|r    3 SGLFISFEGIEGAGKTTHISLLKRFLQR----KNYDVHVTREPGGT-PAAE--AARHV--LLSCGVDEFGAEAEAIVFAA   73 (225)
Q Consensus         3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~----~g~~v~~~~eP~~t-~~ge--~ir~~--l~~~~~~~~~~~~~~lLfaa   73 (225)
T Consensus       173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit--~DtyRigAveQLktya~il~vp-----------~~v~  239 (388)
T PRK12723        173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT--IDNYRIGAKKQIQTYGDIMGIP-----------VKAI  239 (388)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCC-----------EEEE
T ss_conf             76289998998875787999999999986267677379998--0787588999999999997880-----------6985


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCC-CCHHHHHHHHHHHCCCCCCCEEEEEEECHHH
Q ss_conf             99997763565542345258723542431000100344-4245776544420388984115665203487
Q gi|254780218|r   74 ARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDS-SQHLFLDSLQEISVQEVMPDCTIILDLPVDI  142 (225)
Q Consensus        74 dr~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~-~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~  142 (225)
T Consensus       240 ~~~~dl~~~l~-~~~~~D~IlIDT----------AGrs~~d~~~~~el~~~~~-~~~~~~~~~Lvlsat~  297 (388)
T PRK12723        240 ESFKDLKEEIT-QSKDFDLVLIDT----------IGKSPKDFMKLAEMKELLN-ACGRDAEFHLAVSSTT  297 (388)
T ss_pred             CCHHHHHHHHH-HHCCCCEEEEEC----------CCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEECCCC
T ss_conf             78899999999-724999999958----------9988568999999999997-4189845999987989