HHsearch alignment for GI: 254780218 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.17 E-value=0.0019 Score=40.88 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCC-CCCC--HHHHC--CCCCCCCCCHHHHHHHHHHH
Q ss_conf 8868998678887979999999999997----79819998778898-4410--01100--12444541013456777889
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFLQR----KNYDVHVTREPGGT-PAAE--AARHV--LLSCGVDEFGAEAEAIVFAA 73 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~----~g~~v~~~~eP~~t-~~ge--~ir~~--l~~~~~~~~~~~~~~lLfaa 73 (225)
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit--~DtyRigAveQLktya~il~vp-----------~~v~ 239 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT--IDNYRIGAKKQIQTYGDIMGIP-----------VKAI 239 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCC-----------EEEE
T ss_conf 76289998998875787999999999986267677379998--0787588999999999997880-----------6985
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCC-CCHHHHHHHHHHHCCCCCCCEEEEEEECHHH
Q ss_conf 99997763565542345258723542431000100344-4245776544420388984115665203487
Q gi|254780218|r 74 ARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDS-SQHLFLDSLQEISVQEVMPDCTIILDLPVDI 142 (225)
Q Consensus 74 dr~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~-~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~ 142 (225)
T Consensus 240 ~~~~dl~~~l~-~~~~~D~IlIDT----------AGrs~~d~~~~~el~~~~~-~~~~~~~~~Lvlsat~ 297 (388)
T PRK12723 240 ESFKDLKEEIT-QSKDFDLVLIDT----------IGKSPKDFMKLAEMKELLN-ACGRDAEFHLAVSSTT 297 (388)
T ss_pred CCHHHHHHHHH-HHCCCCEEEEEC----------CCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEECCCC
T ss_conf 78899999999-724999999958----------9988568999999999997-4189845999987989