HHsearch alignment for GI: 254780218 and conserved domain: PRK13975
>PRK13975 thymidylate kinase; Provisional.
Probab=100.00 E-value=0 Score=351.07 Aligned_cols=188 Identities=30% Similarity=0.531 Sum_probs=165.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86899867888797999999999999779819998778898441001100124445410134567778899999776356
Q gi|254780218|r 4 GLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVI 83 (225)
Q Consensus 4 g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I 83 (225)
T Consensus 2 ~kfI~fEGiDGsGKsTq~~lL~~~L~-----~~~t~epg~t~~ge~IR~~l~~---~~~~~~~~~LLfaA~R~~~~~~-i 72 (198)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN-----AKFTFEPTDGKIGKSIREILSG---SECQKETLALLFAADRVEHVSE-I 72 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-----CCEEECCCCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHH-H
T ss_conf 98899989988869999999999738-----7488897998447999999826---8998599999999999999999-9
Q ss_pred HHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 55423452587235424310001003444245776544420388984115665203487764432111110000000021
Q gi|254780218|r 84 RPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFE 163 (225)
Q Consensus 84 ~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E 163 (225)
T Consensus 73 ~~~l~~~-~VI~DRy~~St~AYQ~~-~g~~~~~i~~l~~~~---~~PDlt~~LDi~~e~~l~R~~~r~~-------~~~e 140 (198)
T PRK13975 73 EEDLKKS-HVVSDRYVYSSIVYQSS-QGIDKDFIYSINDYA---KIPDLVVLLDVDLEEALKRMESREK-------EIFE 140 (198)
T ss_pred HHHHHCC-CEEEECCCCHHHHHHHH-CCCCHHHHHHHHHCC---CCCCEEEEECCCHHHHHHHHHCCCC-------HHHH
T ss_conf 9998689-88972761239998561-399999999999679---9999899973989999998763573-------1554
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCC------EEEECC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 128899999999999999978994------999818-978899999999999999986
Q gi|254780218|r 164 RKDVMIHEKRRQIFLDIARNQPDR------CHIVDS-AHSFQSVATNILNIVWELVQK 214 (225)
Q Consensus 164 ~~~~~~~~kv~~~y~~la~~~~~~------~~~IDa-~~~~eei~~~I~~~i~~~l~k 214 (225)
T Consensus 141 --~~~f~~kVr~~yl~la~~~~~r~~~~~~~i~Id~~~ksieeV~~~I~~~i~~~lp~ 196 (198)
T PRK13975 141 --KIEIQKKIKEGYYNLINSENEKFMPKYGFIVIDTTSKSIEEVFNEILNAILDKIPD 196 (198)
T ss_pred --HHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf --29999999999999997482310012571899899999999999999999986310