HHsearch alignment for GI: 254780218 and conserved domain: TIGR01526
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=97.27 E-value=0.00053 Score=44.14 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=61.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 689986788879799999999999977981999877889844100110012444--541013456777889999977635
Q gi|254780218|r 5 LFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCG--VDEFGAEAEAIVFAAARLDHVENV 82 (225)
Q Consensus 5 ~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~--~~~~~~~~~~lLfaadr~~~~~~~ 82 (225)
T Consensus 176 k~V~ilG~eStGKstLv~~lA~~~nt~----------~~~Eyar~y~e~~~ggDe~~L~~~dY~~~~~---G~~~~~~~~ 242 (346)
T TIGR01526 176 KTVAILGGESTGKSTLVNKLAEKLNTT----------SAWEYAREYVEAKLGGDEIALQYSDYARIVL---GQIDYIDAA 242 (346)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHCCCCHHHHHCCCHHHHHH---HHHHHHHHH
T ss_conf 588885588863689999999984688----------7125655666651687214542034378764---246677786
Q ss_pred HHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCC--CCC-CEEEEEEEC
Q ss_conf 655423452587235424310001003444245776544420388--984-115665203
Q gi|254780218|r 83 IRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQE--VMP-DCTIILDLP 139 (225)
Q Consensus 83 I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~--~~P-Dl~i~Ldv~ 139 (225)
T Consensus 243 v~~a-~nq~v~f~DTD~i~T~vf--a~~y~G~eDfeql~P~~~~~i~~~r~DL~ll~~p~ 299 (346)
T TIGR01526 243 VRDA-DNQKVAFIDTDFITTQVF--AKLYEGREDFEQLHPFLKKTIAEYRFDLTLLLKPN 299 (346)
T ss_pred HCCC-CCCEEEEEECCHHHHHHH--HHHCCCCCCHHHCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 3073-237478984776789999--98707865544506278877632788479972799