HHsearch alignment for GI: 254780218 and conserved domain: cd00227

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.92  E-value=0.00066  Score=43.59  Aligned_cols=165  Identities=15%  Similarity=0.023  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCC-------CCCCCCHHHHHH-HHHHHH
Q ss_conf             886899867888797999999999999779819998778898441001100124-------445410134567-778899
Q gi|254780218|r    3 SGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLS-------CGVDEFGAEAEA-IVFAAA   74 (225)
Q Consensus         3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~-------~~~~~~~~~~~~-lLfaad   74 (225)
T Consensus         1 ~G~II~LNG~SSSGKSsiAraLQ~~l~~p---~~h~--~vD~f-~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   74 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHF--GVDSF-IEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAW   74 (175)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCC---EEEE--EHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             97499986899898899999999847675---6884--18589-886763136875422348776635415699999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf             99977635655423452587235424310001003444245776544420388984115665203487764432111110
Q gi|254780218|r   75 RLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLR  154 (225)
Q Consensus        75 r~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~  154 (225)
T Consensus        75 -----~~~iaa~a~aG~nvIvD~v~~------------~~~~l~d~~~~L~--g~~v~~VGV~C~l~~l~~RE~~RgDR~  135 (175)
T cd00227          75 -----YEAVAAMARAGANVIADDVFL------------GRAALQDCWRSFV--GLDVLWVGVRCPGEVAEGRETARGDRV  135 (175)
T ss_pred             -----HHHHHHHHHCCCCEEEEEEEC------------CCHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf             -----999999997799889863123------------8088999999857--992799998789999999987458999


Q ss_pred             HCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHH
Q ss_conf             000000021128899999999999999978994999818-978899999999999
Q gi|254780218|r  155 ESACLDYFERKDVMIHEKRRQIFLDIARNQPDRCHIVDS-AHSFQSVATNILNIV  208 (225)
Q Consensus       155 ~~~~~d~~E~~~~~~~~kv~~~y~~la~~~~~~~~~IDa-~~~~eei~~~I~~~i  208 (225)
T Consensus       136 ~G~A--------~~q~~~VH~--------~~~YDleVDTs~~sp~eCA~~I~~~l  174 (175)
T cd00227         136 PGQA--------RKQARVVHA--------GVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             CCHH--------HHHHHHHHC--------CCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             6467--------889998435--------99885687799999999999999971