HHsearch alignment for GI: 254780218 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.92 E-value=0.00066 Score=43.59 Aligned_cols=165 Identities=15% Similarity=0.023 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCC-------CCCCCCHHHHHH-HHHHHH
Q ss_conf 886899867888797999999999999779819998778898441001100124-------445410134567-778899
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLS-------CGVDEFGAEAEA-IVFAAA 74 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~-------~~~~~~~~~~~~-lLfaad 74 (225)
T Consensus 1 ~G~II~LNG~SSSGKSsiAraLQ~~l~~p---~~h~--~vD~f-~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 74 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHF--GVDSF-IEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAW 74 (175)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCC---EEEE--EHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 97499986899898899999999847675---6884--18589-886763136875422348776635415699999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 99977635655423452587235424310001003444245776544420388984115665203487764432111110
Q gi|254780218|r 75 RLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLR 154 (225)
Q Consensus 75 r~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~ 154 (225)
T Consensus 75 -----~~~iaa~a~aG~nvIvD~v~~------------~~~~l~d~~~~L~--g~~v~~VGV~C~l~~l~~RE~~RgDR~ 135 (175)
T cd00227 75 -----YEAVAAMARAGANVIADDVFL------------GRAALQDCWRSFV--GLDVLWVGVRCPGEVAEGRETARGDRV 135 (175)
T ss_pred -----HHHHHHHHHCCCCEEEEEEEC------------CCHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf -----999999997799889863123------------8088999999857--992799998789999999987458999
Q ss_pred HCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHH
Q ss_conf 000000021128899999999999999978994999818-978899999999999
Q gi|254780218|r 155 ESACLDYFERKDVMIHEKRRQIFLDIARNQPDRCHIVDS-AHSFQSVATNILNIV 208 (225)
Q Consensus 155 ~~~~~d~~E~~~~~~~~kv~~~y~~la~~~~~~~~~IDa-~~~~eei~~~I~~~i 208 (225)
T Consensus 136 ~G~A--------~~q~~~VH~--------~~~YDleVDTs~~sp~eCA~~I~~~l 174 (175)
T cd00227 136 PGQA--------RKQARVVHA--------GVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred CCHH--------HHHHHHHHC--------CCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 6467--------889998435--------99885687799999999999999971