HHsearch alignment for GI: 254780218 and conserved domain: cd00464

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.48  E-value=1e-06  Score=60.40  Aligned_cols=149  Identities=21%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99867888797999999999999779819998778898441001100124445410134567778899999776356554
Q gi|254780218|r    7 ISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRPA   86 (225)
Q Consensus         7 I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p~   86 (225)
T Consensus         2 I~LiG~~G~GKstigk~la~~l---~~~fiD~D~~Ie~~~g~si~eif~~~Ge~~F------------R~-~E~~~l~~~   65 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL---GLPFVDLDELIEQRAGMSIPEIFAEEGEEGF------------RE-LEREVLLLL   65 (154)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEECCHHHHHHHCCCHHHHHHHCCHHHH------------HH-HHHHHHHHH
T ss_conf             8998899998899999999997---9897968599999949999999987493878------------99-999999998


Q ss_pred             HCCCCEEEECCCCCCCEEHHCCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             234525872354243100010034442--457765444203889841156652034877644321111100000000211
Q gi|254780218|r   87 LMEGKILLCDRFLDSSYAYQGERDSSQ--HLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFER  164 (225)
Q Consensus        87 L~~g~iVI~DRy~~S~lAYQ~~~~~~~--~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~  164 (225)
T Consensus        66 ~~~~~~VIs~----------G--GG~v~~~~~~~~l~-------~~~~vI~L~~~~~~l~~Rl~~~~~RPll~~~~~-~~  125 (154)
T cd00464          66 LTKENAVIAT----------G--GGAVLREENRRLLL-------ENGIVVWLDASPEELLERLARDKTRPLLQDEDP-ER  125 (154)
T ss_pred             HCCCCEEEEC----------C--CCCCCCHHHHHHHH-------HCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCH-HH
T ss_conf             5689859973----------8--97336899999999-------579089995799999999607999998889999-99


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEECC-CCCHH
Q ss_conf             28899999999999999978994999818-97889
Q gi|254780218|r  165 KDVMIHEKRRQIFLDIARNQPDRCHIVDS-AHSFQ  198 (225)
Q Consensus       165 ~~~~~~~kv~~~y~~la~~~~~~~~~IDa-~~~~e  198 (225)
T Consensus       126 -l~~l~~~R~~~Y~~~Ad------~~i~~~~~s~~  153 (154)
T cd00464         126 -LRELLEEREPLYREVAD------LTIDTDELSPE  153 (154)
T ss_pred             -HHHHHHHHHHHHHHHCC------EEEECCCCCCC
T ss_conf             -99999999999998799------99979898999