HHsearch alignment for GI: 254780218 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.86 E-value=2.3e-20 Score=141.77 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=117.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------CCCCCH----------HHHCCCCCCCCCCHHHHHHH
Q ss_conf 89986788879799999999999977981999877889------844100----------11001244454101345677
Q gi|254780218|r 6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGG------TPAAEA----------ARHVLLSCGVDEFGAEAEAI 69 (225)
Q Consensus 6 ~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~------t~~ge~----------ir~~l~~~~~~~~~~~~~~l 69 (225)
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l---~~~--~~~Ep~~~~~~~~~~~~~~~~~~~~~np~L~~FY~dP~~~~~~af~~Q~ 75 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL---GMK--YFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQS 75 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCC--CCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHCCHHHHHHHH
T ss_conf 98996785679999999999985---982--1035235543002454553331125686499997291111014389999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCC---CCCCCHHHHHHH----HHHHCCCCCCCEEEEEEECHHH
Q ss_conf 788999997763565542345258723542431000100---344424577654----4420388984115665203487
Q gi|254780218|r 70 VFAAARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGE---RDSSQHLFLDSL----QEISVQEVMPDCTIILDLPVDI 142 (225)
Q Consensus 70 Lfaadr~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~---~~~~~~~~i~~l----~~~~~~~~~PDl~i~Ldv~~e~ 142 (225)
T Consensus 76 ~~~~~R~~q~~~~~~~~~~~~~~vv~eRSi~sD~iFa~~~~~~g~l~~~e~~~Y~~~~~~~~~~~~~PdlvIYL~a~pe~ 155 (219)
T cd02030 76 WMYSSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPE 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHH
T ss_conf 99999999999999887620797556773577599999999768988899999999999974258999989998399999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH----HHCCCCEEEECCC--CCHHHHHHHHHH
Q ss_conf 764432111110000000021128899999999999999----9789949998189--788999999999
Q gi|254780218|r 143 GLKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDIA----RNQPDRCHIVDSA--HSFQSVATNILN 206 (225)
Q Consensus 143 a~~Ri~~R~~~~~~~~~d~~E~~~~~~~~kv~~~y~~la----~~~~~~~~~IDa~--~~~eei~~~I~~ 206 (225)
T Consensus 156 ~~~RI~kRgR~~E~~-------I~~~YL~~L~~~ye~~fl~~~~~~-~~vlv~D~~~~~~~~~v~~~~e~ 217 (219)
T cd02030 156 VQKRIKKRGDPHEMK-------VTSAYLQDIENAYKKTFLPEISEH-SEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHHHHHHHCCHHHCC-------CCHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999839475408-------999999999999999999988658-96799876656659999999984