HHsearch alignment for GI: 254780218 and conserved domain: cd02030

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.86  E-value=2.3e-20  Score=141.77  Aligned_cols=188  Identities=15%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------CCCCCH----------HHHCCCCCCCCCCHHHHHHH
Q ss_conf             89986788879799999999999977981999877889------844100----------11001244454101345677
Q gi|254780218|r    6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGG------TPAAEA----------ARHVLLSCGVDEFGAEAEAI   69 (225)
Q Consensus         6 ~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~------t~~ge~----------ir~~l~~~~~~~~~~~~~~l   69 (225)
T Consensus         1 iI~IEGnIG~GKTTl~~~La~~l---~~~--~~~Ep~~~~~~~~~~~~~~~~~~~~~np~L~~FY~dP~~~~~~af~~Q~   75 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKL---GMK--YFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQS   75 (219)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCC--CCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHCCHHHHHHHH
T ss_conf             98996785679999999999985---982--1035235543002454553331125686499997291111014389999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHCC---CCCCCHHHHHHH----HHHHCCCCCCCEEEEEEECHHH
Q ss_conf             788999997763565542345258723542431000100---344424577654----4420388984115665203487
Q gi|254780218|r   70 VFAAARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGE---RDSSQHLFLDSL----QEISVQEVMPDCTIILDLPVDI  142 (225)
Q Consensus        70 Lfaadr~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~---~~~~~~~~i~~l----~~~~~~~~~PDl~i~Ldv~~e~  142 (225)
T Consensus        76 ~~~~~R~~q~~~~~~~~~~~~~~vv~eRSi~sD~iFa~~~~~~g~l~~~e~~~Y~~~~~~~~~~~~~PdlvIYL~a~pe~  155 (219)
T cd02030          76 WMYSSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPE  155 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHH
T ss_conf             99999999999999887620797556773577599999999768988899999999999974258999989998399999


Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH----HHCCCCEEEECCC--CCHHHHHHHHHH
Q ss_conf             764432111110000000021128899999999999999----9789949998189--788999999999
Q gi|254780218|r  143 GLKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDIA----RNQPDRCHIVDSA--HSFQSVATNILN  206 (225)
Q Consensus       143 a~~Ri~~R~~~~~~~~~d~~E~~~~~~~~kv~~~y~~la----~~~~~~~~~IDa~--~~~eei~~~I~~  206 (225)
T Consensus       156 ~~~RI~kRgR~~E~~-------I~~~YL~~L~~~ye~~fl~~~~~~-~~vlv~D~~~~~~~~~v~~~~e~  217 (219)
T cd02030         156 VQKRIKKRGDPHEMK-------VTSAYLQDIENAYKKTFLPEISEH-SEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHHHHHHHCCHHHCC-------CCHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH
T ss_conf             999999839475408-------999999999999999999988658-96799876656659999999984