HHsearch alignment for GI: 254780218 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.40 E-value=0.017 Score=35.12 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 88868998678887979999999
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLL 24 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L 24 (225)
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~ 41 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89989999999999899999988