HHsearch alignment for GI: 254780218 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.43 E-value=0.04 Score=32.95 Aligned_cols=26 Identities=42% Similarity=0.399 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88689986788879799999999999
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFL 28 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L 28 (225)
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 08889999899999999999986304