HHsearch alignment for GI: 254780218 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.18 E-value=0.0048 Score=38.46 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 8886899867888797999999999999
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQ 29 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~ 29 (225)
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7999999999999859999999967254