HHsearch alignment for GI: 254780218 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.43 E-value=0.0019 Score=40.80 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 98886899867888797999999999999
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQ 29 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~~~L~~~L~ 29 (225)
T Consensus 37 i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 82999999999999849999999964546