HHsearch alignment for GI: 254780218 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.56 E-value=0.012 Score=36.01 Aligned_cols=30 Identities=40% Similarity=0.653 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 888689986788879799999999999977
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRK 31 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~ 31 (225)
T Consensus 45 ~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~ 74 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 489599999999830999999996494887