HHsearch alignment for GI: 254780218 and conserved domain: pfam00693
>pfam00693 Herpes_TK Thymidine kinase from herpesvirus.
Probab=97.95 E-value=0.00022 Score=46.38 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CCCC-CCHHHHCCCC---CCCCCCHHHHHH-------HHHHHHHH
Q ss_conf 78887979999999999997798199987788---9844-1001100124---445410134567-------77889999
Q gi|254780218|r 11 GIEGAGKTTHISLLKRFLQRKNYDVHVTREPG---GTPA-AEAARHVLLS---CGVDEFGAEAEA-------IVFAAARL 76 (225)
Q Consensus 11 GiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~---~t~~-ge~ir~~l~~---~~~~~~~~~~~~-------lLfaadr~ 76 (225)
T Consensus 1 G~~GiGKTTt~~~l~~~~~~-~~~~lyvpEPMaYWR~~f~~D~I~~Iy~tq~R~~~geis~~~A~~~~a~~Q~~f~~P-y 78 (279)
T pfam00693 1 GAHGIGKTTTARALAAASSA-GGPILYVPEPMAYWRTLFGTDAISGIYDTQTRKARGELSAEDAAVITAHLQARFATP-Y 78 (279)
T ss_pred CCCCCCHHHHHHHHHHHCCC-CCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-H
T ss_conf 99763577799999861367-897576276289999875115999998888888658877888999999987762561-9
Q ss_pred HHHHHHHHHHH----C-----CCCEEEECCCCC-CCEEHHCCCCCCCHHHHHHHHHHHC---CCCCCCEEEEEEECHHHH
Q ss_conf 97763565542----3-----452587235424-3100010034442457765444203---889841156652034877
Q gi|254780218|r 77 DHVENVIRPAL----M-----EGKILLCDRFLD-SSYAYQGERDSSQHLFLDSLQEISV---QEVMPDCTIILDLPVDIG 143 (225)
Q Consensus 77 ~~~~~~I~p~L----~-----~g~iVI~DRy~~-S~lAYQ~~~~~~~~~~i~~l~~~~~---~~~~PDl~i~Ldv~~e~a 143 (225)
T Consensus 79 ~~lh~~l~~~~g~~~~~~~~~P~~~lifDRHPvAa~lCfP~ARYl~G~~s~~~llsl~a~lP~eppG~NLVv~~L~~~Eh 158 (279)
T pfam00693 79 LILHERLSPLVGGELAQPGAAPDVTLVFDRHPVAATLCFPLARYLLGDMSLEALLSLIATLPPEPPGTNLVVCTLPEAEH 158 (279)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEECCHHHH
T ss_conf 99999998761777789999987799984670288876489999846688999999998588999997479885888999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 644321111100000000211288999999999999999
Q gi|254780218|r 144 LKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDIAR 182 (225)
Q Consensus 144 ~~Ri~~R~~~~~~~~~d~~E~~~~~~~~kv~~~y~~la~ 182 (225)
T Consensus 159 ~~RL~~R~RpG--------E~~D~~~l~alRnvY~~L~N 189 (279)
T pfam00693 159 ARRLRARARPG--------ERVDLTMLAALRNVYAMLVN 189 (279)
T ss_pred HHHHHHCCCCC--------CCCCHHHHHHHHHHHHHHHH
T ss_conf 99999627996--------20159999999999999999