HHsearch alignment for GI: 254780218 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.25 E-value=0.033 Score=33.42 Aligned_cols=21 Identities=43% Similarity=0.600 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 998678887979999999999
Q gi|254780218|r 7 ISFEGIEGAGKTTHISLLKRF 27 (225)
Q Consensus 7 I~iEGiDGsGKsTq~~~L~~~ 27 (225)
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~~ 21 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLRT 21 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHH
T ss_conf 959407999889999999864