HHsearch alignment for GI: 254780218 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.91 E-value=0.069 Score=31.52 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 9888689986788879799999999999-97798199987
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHISLLKRFL-QRKNYDVHVTR 39 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~~~L~~~L-~~~g~~v~~~~ 39 (225)
T Consensus 16 l~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~s 55 (186)
T pfam03796 16 LQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFS 55 (186)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 8888179999679998799999999999997099668754