Query gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 117
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 20:34:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780219.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b43_A Protein (FEN-1); nuclea 44.6 5.9 0.00025 19.5 1.0 25 4-28 220-245 (340)
2 3kae_A CDC27, possible protein 40.2 20 0.00086 16.4 4.3 92 6-98 113-205 (242)
3 1a76_A Flap endonuclease-1 pro 23.0 31 0.0013 15.3 1.7 22 8-29 212-234 (326)
4 2izo_A FEN1, flap structure-sp 21.1 20 0.00086 16.4 0.5 27 5-31 218-245 (346)
5 3ghg_A Fibrinogen alpha chain; 17.6 53 0.0022 14.0 4.4 33 58-90 125-157 (562)
6 1hm6_A Annexin 1; phospholipid 12.4 75 0.0031 13.1 2.6 35 64-99 118-152 (346)
7 1m9i_A Annexin VI; calcium-bin 11.4 80 0.0034 12.9 2.6 32 67-99 441-472 (672)
8 1w3w_A Annexin A8; coagulation 11.4 80 0.0034 12.9 2.5 36 63-99 96-131 (327)
9 1t3j_A Mitofusin 1; coiled coi 11.1 82 0.0035 12.9 7.7 57 29-86 37-93 (96)
10 2zhj_A Annexin A4; zynogen gra 10.3 87 0.0037 12.7 1.8 86 11-99 39-127 (322)
No 1
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=44.57 E-value=5.9 Score=19.49 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCC-CHHH
Q ss_conf 799999999999610547851-6668
Q gi|254780219|r 4 KIKRFLFPLLALLGSCDDNPK-DPIV 28 (117)
Q Consensus 4 kikrflfpllallgscddnpk-dpiv 28 (117)
.+.+-.|..+|+||.||+||. -|-+
T Consensus 220 gl~~~q~id~all~G~dyn~~gi~gi 245 (340)
T 1b43_A 220 KLTREKLIELAILVGTDYNPGGIKGI 245 (340)
T ss_dssp TCCHHHHHHHHHHHCCTTSTTCSTTC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999998999971875685557982
No 2
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.24 E-value=20 Score=16.39 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999610547851666899984335577777788888874-713577778899999999999999999999999
Q gi|254780219|r 6 KRFLFPLLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKT-YPDTMDKINTVQTALRNLHNAISKMESELKELL 84 (117)
Q Consensus 6 krflfpllallgscddnpkdpivqfkqmkyesqeskkslsdalfkt-ypdtmdkintvqtalrnlhnaiskmeselkell 84 (117)
+.|+.-++|.|-.--.+-+..|-.|+. -|.-.---.....-++.. -|.+.|+-|..|+.-++..+.-----+++.|++
T Consensus 113 kEff~~l~a~l~t~~g~r~EaI~~~~~-Sf~~~~lf~~vEnl~~eN~ip~~~d~~~I~~~~~~~i~~~y~~d~~~lHe~~ 191 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVR-SFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL 191 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHH-HCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999983788888789898-6187714456999887366874123788987242671777777489999875
Q ss_pred HHHHHHHCHHHHHC
Q ss_conf 99986437434221
Q gi|254780219|r 85 SDILLKRHPDEIDK 98 (117)
Q Consensus 85 sdillkrhpdeidk 98 (117)
|+-+.|.--.-+..
T Consensus 192 s~~~ikkY~n~vPG 205 (242)
T 3kae_A 192 SPSLVKKYMEHVPG 205 (242)
T ss_dssp CHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHCCC
T ss_conf 07789999975888
No 3
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=23.04 E-value=31 Score=15.33 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCCCCCC-CHHHH
Q ss_conf 99999999610547851-66689
Q gi|254780219|r 8 FLFPLLALLGSCDDNPK-DPIVQ 29 (117)
Q Consensus 8 flfpllallgscddnpk-dpivq 29 (117)
--|..+|++|.||+|+. -|-+.
T Consensus 212 ~q~id~~il~g~d~n~~gi~giG 234 (326)
T 1a76_A 212 DDLIDIAIFMGTDYNPGGVKGIG 234 (326)
T ss_dssp HHHHHHHHHHCCTTSTTTTTTCC
T ss_pred HHHHHHHHEECCCCCCCCCCCCC
T ss_conf 99998780279645788999424
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.15 E-value=20 Score=16.38 Aligned_cols=27 Identities=19% Similarity=-0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHH
Q ss_conf 999999999996105478-516668999
Q gi|254780219|r 5 IKRFLFPLLALLGSCDDN-PKDPIVQFK 31 (117)
Q Consensus 5 ikrflfpllallgscddn-pkdpivqfk 31 (117)
+.+--|+.+++|+.|||| |.-|-+--|
T Consensus 218 i~~~qfid~~iL~G~dyn~~gv~giG~k 245 (346)
T 2izo_A 218 ITREQLIDIGILIGTDYNPDGIRGIGPE 245 (346)
T ss_dssp CCHHHHHHHHHHHCCSSSTTCSTTCCHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999999999845865686668983799
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=17.63 E-value=53 Score=13.97 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778899999999999999999999999999864
Q gi|254780219|r 58 KINTVQTALRNLHNAISKMESELKELLSDILLK 90 (117)
Q Consensus 58 kintvqtalrnlhnaiskmeselkellsdillk 90 (117)
+|+.-...++.|.+.+..+..+++.|-+||-.+
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~~le~~~~~~ 157 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999
No 6
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=12.36 E-value=75 Score=13.13 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
Q ss_conf 999999999999999999999999864374342213
Q gi|254780219|r 64 TALRNLHNAISKMESELKELLSDILLKRHPDEIDKI 99 (117)
Q Consensus 64 talrnlhnaiskmeselkellsdillkrhpdeidki 99 (117)
.--+.+|.|++..... .++|-+||.-|.++||..|
T Consensus 118 ~dA~~l~~A~kG~gt~-e~~LieIL~trsn~ei~~i 152 (346)
T 1hm6_A 118 FDADELRAAMKGLGTD-EDTLNEILASRTNREIREI 152 (346)
T ss_dssp HHHHHHHHHHSSSCCC-HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHCCHHHHHHH
T ss_conf 9999999986379972-9999999981899999999
No 7
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=11.39 E-value=80 Score=12.95 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
Q ss_conf 999999999999999999999864374342213
Q gi|254780219|r 67 RNLHNAISKMESELKELLSDILLKRHPDEIDKI 99 (117)
Q Consensus 67 rnlhnaiskmeselkellsdillkrhpdeidki 99 (117)
+.||.|++.+.+. ..+|-+||.-|.++||..|
T Consensus 441 ~~l~~A~kG~gTd-e~~LiEIL~tRsn~ei~~i 472 (672)
T 1m9i_A 441 KQLKKAMEGAGTD-EKALIEILATRTNAEIRAI 472 (672)
T ss_dssp HHHHHHHSSSSCC-HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHCCCCC-HHHHHHHHHCCCHHHHHHH
T ss_conf 9999997179985-9999999973999999999
No 8
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=11.39 E-value=80 Score=12.95 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
Q ss_conf 9999999999999999999999999864374342213
Q gi|254780219|r 63 QTALRNLHNAISKMESELKELLSDILLKRHPDEIDKI 99 (117)
Q Consensus 63 qtalrnlhnaiskmeselkellsdillkrhpdeidki 99 (117)
+..-+.||.|++..... .++|-+||+-|.++++..|
T Consensus 96 ~~dA~~l~~A~kG~gtd-e~~Lieil~~rs~~ei~~i 131 (327)
T 1w3w_A 96 RYEAKELHDAMKGLGTK-EGVIIEILASRTKNQLREI 131 (327)
T ss_dssp HHHHHHHHHHHHSSSCC-HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC-HHHHHHHHHHCCHHHHHHH
T ss_conf 88999999997279985-9999999980898999999
No 9
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=11.07 E-value=82 Score=12.88 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998433557777778888887471357777889999999999999999999999999
Q gi|254780219|r 29 QFKQMKYESQESKKSLSDALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELLSD 86 (117)
Q Consensus 29 qfkqmkyesqeskkslsdalfktypdtmdkintvqtalrnlhnaiskmeselkellsd 86 (117)
-|+++.-+-.++++.|...+ +.....++++..+|+-.+-|.|--+-.++||......
T Consensus 37 TFaRLc~qVd~t~~eLeeEI-~~L~~eI~~LE~iqs~aK~LRNKA~~Le~eL~~F~~~ 93 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEI-ARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988999999999-9999999999999999999987898899999999998
No 10
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=10.33 E-value=87 Score=12.73 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999610547851666899984335---577777788888874713577778899999999999999999999999999
Q gi|254780219|r 11 PLLALLGSCDDNPKDPIVQFKQMKYE---SQESKKSLSDALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELLSDI 87 (117)
Q Consensus 11 pllallgscddnpkdpivqfkqmkye---sqeskkslsdalfktypdtmdkintvqtalrnlhnaiskmeselkellsdi 87 (117)
.+...|++....-...|.+.-+-.|. .++-++.+|.-+.+.--..|. ...+---+.||.|+....+. .++|-+|
T Consensus 39 ~li~iL~~rs~~qr~~i~~~Y~~~~g~dL~~~lk~~~sg~~~~~l~~l~~--~~~~~dA~~l~~A~kg~gtd-e~~Liei 115 (322)
T 2zhj_A 39 AIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMT--PTVLYDVQELRRAMKGAGTD-EGCLIEI 115 (322)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHS--CHHHHHHHHHHHHHSSSCCC-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHC--CHHHHHHHHHHHHHCCCCCC-HHHHHHH
T ss_conf 99999807999999999999999979638999988818509999999946--99999999999987188964-9999999
Q ss_pred HHHHCHHHHHCC
Q ss_conf 864374342213
Q gi|254780219|r 88 LLKRHPDEIDKI 99 (117)
Q Consensus 88 llkrhpdeidki 99 (117)
|+-|.|+++..|
T Consensus 116 l~trs~~e~~~i 127 (322)
T 2zhj_A 116 LASRNPEEIRRI 127 (322)
T ss_dssp HHHSCHHHHHHH
T ss_pred HHHCCHHHHHHH
T ss_conf 980888999999
Done!