RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780219|ref|YP_003064632.1| hypothetical protein
CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
         (117 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 34/113 (30%)

Query: 14  ALLGSCDDNPKDPIVQFKQ-MK--YESQE------SKKSLSDALFKTYPDTMDKINTV-- 62
           AL           +V+ K+ +K    ++        KKS S ALF+   +   ++  +  
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAIFG 161

Query: 63  -Q-------TALRNLHNA--------ISKMESELKELLSDILLKRHPDEIDKI 99
            Q         LR+L+          I      L EL+          + +K+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT------TLDAEKV 208



 Score = 26.4 bits (58), Expect = 1.6
 Identities = 11/106 (10%), Positives = 25/106 (23%), Gaps = 26/106 (24%)

Query: 20  DDNPKDPI---VQFKQ--MKYESQESKKSLSDAL------FK-TY--------------P 53
           DD P  P     +F                   L      F+  Y               
Sbjct: 51  DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110

Query: 54  DTMDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKI 99
           +    +   +  ++N   A    +    +  +  L +   +   ++
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156


>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
           1g65_F 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F*
           3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 1g0u_F
          Length = 244

 Score = 28.0 bits (62), Expect = 0.51
 Identities = 14/126 (11%), Positives = 38/126 (30%), Gaps = 10/126 (7%)

Query: 1   MHFKIKRFLFPLLALLGSCDDNPK----DPIVQFKQMKYESQESK----KSLSDALFKTY 52
             +   R         G   +       +P   +   K  +        K+  + L   +
Sbjct: 120 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179

Query: 53  PDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKL 112
           P+ +     V+ A + ++ A    + +  EL          + + K     +   E    
Sbjct: 180 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVK-GDLLQEAIDF 238

Query: 113 -KEDLS 117
            +++++
Sbjct: 239 AQKEIN 244


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.7 bits (60), Expect = 0.72
 Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 72 AISKMESELKELLSD 86
          A+ K+++ LK L +D
Sbjct: 21 ALKKLQASLK-LYAD 34


>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
           PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia
           solanacearum MOLK2}
          Length = 335

 Score = 27.1 bits (58), Expect = 1.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 84  LSDILLKRHPDEIDKIN 100
           L D    R P EID + 
Sbjct: 277 LQDAEAGRGPLEIDALV 293


>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell
           adhesion; 1.90A {Moraxella catarrhalis}
          Length = 157

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 57  DKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKLKEDL 116
           D+I T +  +          +++  E    I  K   D       I N     S +   +
Sbjct: 19  DRIATAELGIAENKKDAQIAKAQANENKDGI-AKNQADIQLHDKKITNLGILHSMVARAV 77

Query: 117 S 117
            
Sbjct: 78  G 78


>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
           taurus} SCOP: i.9.1.1
          Length = 390

 Score = 26.0 bits (56), Expect = 2.1
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 36  ESQESKKSLSDALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDE 95
            +  + K +++ L         K+      +  L   +     ++K L  DI        
Sbjct: 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI-------- 157

Query: 96  IDKINPIKNSANEISKLKEDL 116
             KI   K S +   + K DL
Sbjct: 158 DIKIRSCKGSCSRALEHKVDL 178


>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
          HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
          a.99.1.1 c.28.1.1 PDB: 1u3c_A*
          Length = 509

 Score = 25.8 bits (55), Expect = 2.4
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 47 ALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKI 99
          ALF   P+     +  + +   L N++++++S L+ L + ++ KR  D +  +
Sbjct: 41 ALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASL 93


>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
          2.50A {Mus musculus} SCOP: h.4.16.1
          Length = 96

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 30 FKQMKYESQESKKSLSDALFKTYPDTMDKINTVQTALRNLHNAISKMESEL 80
          F ++  +   ++K L + +       +D++  +Q   + L N   ++ESEL
Sbjct: 38 FARLCQQVDMTQKHLEEEI-ARLSKEIDQLEKMQNNSKLLRNKAVQLESEL 87


>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin
           complex, nuclear pore complex, macromolecular assembly;
           2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C
           3ewe_B
          Length = 570

 Score = 24.9 bits (54), Expect = 5.0
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 3/83 (3%)

Query: 12  LLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKTYPDTMDKINTVQTALRNLHN 71
            + LL     +       F++ K    +  ++   +      +  D I      +     
Sbjct: 288 SIELLKQYPKDSSS---TFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQR 344

Query: 72  AISKMESELKELLSDILLKRHPD 94
            I +      E     LL   P 
Sbjct: 345 KILQYSRTWYESFCGFLLYYIPS 367


>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron
           transfer, oxidoreductase, acetyl-COA formation,
           WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica}
           SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A
           3git_A
          Length = 729

 Score = 24.7 bits (54), Expect = 5.6
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 76  MESELKELLSDILLKR-----HPDE-IDKI 99
           M   LK+ L D  ++R       ++ IDKI
Sbjct: 670 MPKSLKDFLHDEFVRRSVEEGLGEDFIDKI 699


>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
           signaling protein; 2.04A {Bordetella pertussis} PDB:
           3mpl_A
          Length = 267

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 72  AISKMESELKELLSDILLKRHPDEIDKI 99
           A ++ ++EL  +L+  L     DE+  I
Sbjct: 219 ATTRGQTELMSILNKALYSISNDELASI 246


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 956,401
Number of extensions: 38579
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 45
Length of query: 117
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 37
Effective length of database: 3,753,710
Effective search space: 138887270
Effective search space used: 138887270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)