BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780219|ref|YP_003064632.1| hypothetical protein
CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
(117 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 117
Score = 234 bits (598), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MHFKIKRFLFPLLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKTYPDTMDKIN 60
MHFKIKRFLFPLLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKTYPDTMDKIN
Sbjct: 1 MHFKIKRFLFPLLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKTYPDTMDKIN 60
Query: 61 TVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKLKEDLS 117
TVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKLKEDLS
Sbjct: 61 TVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKLKEDLS 117
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 23.9 bits (50), Expect = 0.92, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 52 YPDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKR-----HPDEIDKI 99
+ ++ + + T + ++ +SK +S++++ L+D+++ R H D I+ +
Sbjct: 183 FAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235
>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
str. psy62]
Length = 425
Score = 22.3 bits (46), Expect = 2.8, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 42 KSLSDALFKTYPDTMDKI 59
KSLSD++ + + D +DKI
Sbjct: 18 KSLSDSMSRGHWDNVDKI 35
>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 196
Score = 21.6 bits (44), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 45 SDALFKTYPDTMDKINTVQTALRNLHNAISKM----ESELKELLSDILLKR 91
S L KTYP+T +I ++ N+ N + ++ KEL S+IL K+
Sbjct: 28 SPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKK 78
>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 366
Score = 20.8 bits (42), Expect = 6.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 56 MDKINTVQTALRNLHNAISKMESELKELLS 85
MD +N ++ A +IS + +LK L S
Sbjct: 28 MDSLNAIRVATLGRKGSISSLLKDLKNLDS 57
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,786
Number of Sequences: 1233
Number of extensions: 2356
Number of successful extensions: 21
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 117
length of database: 328,796
effective HSP length: 63
effective length of query: 54
effective length of database: 251,117
effective search space: 13560318
effective search space used: 13560318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)