Query gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 23 18:48:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780220.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam06798 PrkA PrkA serine pro 48.0 27 0.00069 17.4 6.4 70 19-88 110-204 (254)
2 KOG3232 consensus 42.3 21 0.00054 18.0 2.4 41 46-86 5-45 (203)
3 pfam07273 DUF1439 Protein of u 42.1 13 0.00032 19.3 1.2 56 1-56 1-61 (177)
4 TIGR03525 GldK gliding motilit 38.4 20 0.00051 18.1 1.8 19 1-19 1-19 (449)
5 PRK10598 hypothetical protein; 38.3 16 0.0004 18.7 1.2 54 1-55 1-61 (186)
6 PRK10877 thiol:disulfide inter 36.7 41 0.001 16.3 3.3 32 1-32 1-32 (232)
7 PRK10760 murein hydrolase B; P 32.2 31 0.00078 17.0 1.9 20 1-20 1-20 (357)
8 TIGR02858 spore_III_AA stage I 27.9 31 0.00079 17.0 1.3 24 7-30 43-66 (282)
9 pfam06291 Lambda_Bor Bor prote 27.3 37 0.00094 16.6 1.7 23 1-23 1-23 (97)
10 KOG3438 consensus 26.7 50 0.0013 15.8 2.3 19 23-41 85-103 (105)
11 KOG3478 consensus 24.2 53 0.0014 15.7 2.0 37 35-71 53-101 (120)
12 pfam09170 DUF1879 Domain of un 23.9 69 0.0017 15.0 2.8 53 23-77 100-157 (174)
13 pfam10798 YmgB Biofilm develop 23.9 69 0.0017 15.0 3.5 32 5-36 25-56 (60)
14 KOG2284 consensus 23.8 69 0.0018 15.0 2.7 37 9-47 241-277 (728)
15 KOG4411 consensus 23.1 63 0.0016 15.2 2.2 57 38-95 193-263 (292)
16 pfam03310 Cauli_DNA-bind Cauli 22.0 75 0.0019 14.8 4.5 48 44-92 4-51 (121)
17 PRK11415 hypothetical protein; 20.5 33 0.00084 16.9 0.3 42 54-95 32-73 (74)
18 PRK13680 hypothetical protein; 20.2 46 0.0012 16.0 1.0 21 1-21 5-25 (121)
19 pfam08139 LPAM_1 Prokaryotic m 20.1 64 0.0016 15.2 1.7 22 1-22 1-22 (26)
No 1
>pfam06798 PrkA PrkA serine protein kinase C-terminal domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This family corresponds to the C-terminal domain.
Probab=47.96 E-value=27 Score=17.36 Aligned_cols=70 Identities=29% Similarity=0.407 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------CCCCCHHHHHHCHHH--------------HHHHHHHHHH-HHHHHHCCCCCC
Q ss_conf 578779998876656888874-------188740113216999--------------8734566888-545552478860
Q gi|254780220|r 19 DYVYEDAIRSQFENEIRYYKS-------MHPSTQDDIEYNLSE--------------IKSFENQILA-ISNKLEKGQKPK 76 (97)
Q Consensus 19 dyvyedairsqfeneiryyks-------mhpstqddieynlse--------------iksfenqila-isnklekgqkpk 76 (97)
-+.|++++++.|+|-|-+-.. ..|.|....+-.=.. -++|-+.|++ |+...-.|.+|.
T Consensus 110 ~~s~ee~~q~lf~~Yid~~~a~~~~~k~kDp~TGe~~~pDE~~mrsIEe~igI~~~~~~dFR~eI~~~i~~~~~~G~~~d 189 (254)
T pfam06798 110 IESYEEAAQNLFDNYLDNVEAYINDEKVKDPLTGEELEPDERFLRSIEEQIGISEERKKDFRREIVNYIGRLAREGKKFD 189 (254)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64439999999999999999998236215897555216038999999987089876567899999999999983899999
Q ss_pred CH---HHHHHHHHHH
Q ss_conf 02---2999999999
Q gi|254780220|r 77 YL---HLKEAIQKIV 88 (97)
Q Consensus 77 yl---hlkeaiqkiv 88 (97)
|- .|++||.+-.
T Consensus 190 ~~s~e~LreaiEkkL 204 (254)
T pfam06798 190 YDSYERLREAIEKKL 204 (254)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 985699999999999
No 2
>KOG3232 consensus
Probab=42.33 E-value=21 Score=17.98 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=29.7
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 11321699987345668885455524788600229999999
Q gi|254780220|r 46 DDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQK 86 (97)
Q Consensus 46 ddieynlseiksfenqilaisnklekgqkpkylhlkeaiqk 86 (97)
+..|-.|-+.|-+-.|.--..+|.||+.|..-..+|.||||
T Consensus 5 ~~le~~lf~LkF~sk~L~r~A~kceKeEk~Ek~K~kkAi~k 45 (203)
T KOG3232 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQK 45 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999888778779999999987326778888899999981
No 3
>pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.
Probab=42.06 E-value=13 Score=19.26 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCHHHH-HHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHH
Q ss_conf 963577-89999998423---557-877999887665688887418874011321699987
Q gi|254780220|r 1 MKKTQL-LLPLLTLLSSC---SDY-VYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIK 56 (97)
Q Consensus 1 mkktql-llplltllssc---sdy-vyedairsqfeneiryyksmhpstqddieynlseik 56 (97)
||+-.+ .+.++.+|+.| +.| +-|.-|......++.|-+..--+---+..++|+.+.
T Consensus 1 Mk~~~~~~~~l~~~LsgC~~ls~ysISE~Ein~yL~k~~~~~k~~gi~gl~~~~~~l~~l~ 61 (177)
T pfam07273 1 MKKLLLLILLLVLLLSGCASLSQYSISEAEINQYLQKEVHLEKKVGIPGLAPADVSLNDLD 61 (177)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCE
T ss_conf 9148999999999971557566252669999999987457778608877335799973550
No 4
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=38.43 E-value=20 Score=18.12 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9635778999999842355
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSD 19 (97)
Q Consensus 1 mkktqlllplltllsscsd 19 (97)
|||--+++-++.+++||+.
T Consensus 1 Mkk~~~~~~~~~~~~SCg~ 19 (449)
T TIGR03525 1 MKKYLVFAALVVLVYSCGS 19 (449)
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 9124899999998721058
No 5
>PRK10598 hypothetical protein; Provisional
Probab=38.28 E-value=16 Score=18.73 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCHHHH--HHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHCHHHH
Q ss_conf 963577--89999998423---557-877999887665688887418-87401132169998
Q gi|254780220|r 1 MKKTQL--LLPLLTLLSSC---SDY-VYEDAIRSQFENEIRYYKSMH-PSTQDDIEYNLSEI 55 (97)
Q Consensus 1 mkktql--llplltllssc---sdy-vyedairsqfeneiryyksmh-pstqddieynlsei 55 (97)
|||--+ .|-+..++|.| +.| |-|.-|..-...+++|.+..- |+ --+..+++..+
T Consensus 1 mkk~~l~~~l~l~~llsGC~~l~qYsISEqEin~YL~~~~~~~k~iGi~g-l~~a~i~l~dl 61 (186)
T PRK10598 1 MKKFLLAAALLVSGLLVGCNQLTQYTISEQEINQYLAKHNNFSKDIGLPG-VADAHIVLTNL 61 (186)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCHHHHCCCCC-CEEEEEEEEEE
T ss_conf 91269999999999971435336440079999999987433787718887-42468998030
No 6
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=36.74 E-value=41 Score=16.33 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96357789999998423557877999887665
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFEN 32 (97)
Q Consensus 1 mkktqlllplltllsscsdyvyedairsqfen 32 (97)
|||.-+++.+|-+.-|++-.--|.+|+..++.
T Consensus 1 mkk~l~~~~~l~~~~s~~a~aDea~i~~~l~k 32 (232)
T PRK10877 1 MKKGFMLFTLLAAAFSGFAHADDAAIQQTLAK 32 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 92669999999999862524379999999998
No 7
>PRK10760 murein hydrolase B; Provisional
Probab=32.17 E-value=31 Score=17.04 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 96357789999998423557
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSDY 20 (97)
Q Consensus 1 mkktqlllplltllsscsdy 20 (97)
|.+.-.+|||+.+|+.||.-
T Consensus 1 ~r~~~~~~~~~~~l~~css~ 20 (357)
T PRK10760 1 KRRYVTLLPLFVLLAACSSK 20 (357)
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 94048689999999985189
No 8
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=27.85 E-value=31 Score=17.01 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999984235578779998876
Q gi|254780220|r 7 LLPLLTLLSSCSDYVYEDAIRSQF 30 (97)
Q Consensus 7 llplltllsscsdyvyedairsqf 30 (97)
..-++.++|.-|=|-|||-||+-|
T Consensus 43 ~~~~~~~~S~ySlYA~EeElk~GY 66 (282)
T TIGR02858 43 VEAILQLISQYSLYAFEEELKQGY 66 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 999999876312456557650760
No 9
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=27.26 E-value=37 Score=16.57 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96357789999998423557877
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSDYVYE 23 (97)
Q Consensus 1 mkktqlllplltllsscsdyvye 23 (97)
|||.-+..-+..||++|+..-+.
T Consensus 1 MKk~~~~~~~allLtgCa~QT~~ 23 (97)
T pfam06291 1 MKKMLFAAALALLITGCAQQTFT 23 (97)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 92259999999997213304999
No 10
>KOG3438 consensus
Probab=26.70 E-value=50 Score=15.80 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 7999887665688887418
Q gi|254780220|r 23 EDAIRSQFENEIRYYKSMH 41 (97)
Q Consensus 23 edairsqfeneiryyksmh 41 (97)
-|++|+.|+.+|.-||++.
T Consensus 85 c~~v~~kF~~~i~~~k~~~ 103 (105)
T KOG3438 85 CDHVRSKFEEEIEEYKDQK 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998744311
No 11
>KOG3478 consensus
Probab=24.17 E-value=53 Score=15.66 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=28.1
Q ss_pred HHHHHCCCC------------CHHHHHHCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 888741887------------4011321699987345668885455524
Q gi|254780220|r 35 RYYKSMHPS------------TQDDIEYNLSEIKSFENQILAISNKLEK 71 (97)
Q Consensus 35 ryyksmhps------------tqddieynlseiksfenqilaisnklek 71 (97)
.-||-..|. ....+||--+|||+.|+||-.++.+++|
T Consensus 53 ~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478 53 NVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2899860254287799988608999999999999999998889999999
No 12
>pfam09170 DUF1879 Domain of unknown function (DUF1879). This domain is found in a set of hypothetical eukaryotic proteins, as well as in oligonucleotide/oligosaccharide-binding fold-containing protein-1.
Probab=23.89 E-value=69 Score=15.03 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHH-----HCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999887665688887-----418874011321699987345668885455524788600
Q gi|254780220|r 23 EDAIRSQFENEIRYYK-----SMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKY 77 (97)
Q Consensus 23 edairsqfeneiryyk-----smhpstqddieynlseiksfenqilaisnklekgqkpky 77 (97)
-.+|+|-|.+.|+..- -+..+|+|+.-|-..+-|.....|+.|-. |.-|||||
T Consensus 100 skqI~siFKeAi~~Lqe~G~Vfqk~~~~d~lY~VT~~DK~Lh~~il~IIr--eDcqkpkh 157 (174)
T pfam09170 100 SKQIRSIFKEALQLLQEEGLVFQKDKTQDEVYYVTDQDKDLHIAIKDIIR--EDCKKEKH 157 (174)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCHHHHHHHHHHHH--HHHCCCCC
T ss_conf 89999999999999997797885079866427850575889999999999--98258764
No 13
>pfam10798 YmgB Biofilm development protein YmgB/AriR. YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).
Probab=23.88 E-value=69 Score=15.03 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999984235578779998876656888
Q gi|254780220|r 5 QLLLPLLTLLSSCSDYVYEDAIRSQFENEIRY 36 (97)
Q Consensus 5 qlllplltllsscsdyvyedairsqfeneiry 36 (97)
.+.+-|..-|.+-+|-|.-|.+|+-.|--++|
T Consensus 25 ~IIl~LI~~LEst~dvv~~Dv~R~~LEiVV~~ 56 (60)
T pfam10798 25 DIILKLIHKLETESDVVRADVYRKTLEIVVRK 56 (60)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999986200189999999999999605
No 14
>KOG2284 consensus
Probab=23.77 E-value=69 Score=15.01 Aligned_cols=37 Identities=35% Similarity=0.485 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999998423557877999887665688887418874011
Q gi|254780220|r 9 PLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDD 47 (97)
Q Consensus 9 plltllsscsdyvyedairsqfeneiryyksmhpstqdd 47 (97)
.+|+ -+|||.|. |..|.---..|||--|-.|||.-..
T Consensus 241 ~~l~-~~~cs~ym-e~vi~~l~~ee~r~~kylh~ss~~k 277 (728)
T KOG2284 241 KMLT-DLSCSEYM-EQVIVLLEQEEMRAKKYLHESSVEK 277 (728)
T ss_pred HHHH-HCCHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9876-34489999-9999884388888987538044899
No 15
>KOG4411 consensus
Probab=23.08 E-value=63 Score=15.23 Aligned_cols=57 Identities=28% Similarity=0.411 Sum_probs=38.6
Q ss_pred HHCCCCCHHHHHHCHHHHHHHHHHHHHHH--------------HHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 74188740113216999873456688854--------------55524788600229999999999986420
Q gi|254780220|r 38 KSMHPSTQDDIEYNLSEIKSFENQILAIS--------------NKLEKGQKPKYLHLKEAIQKIVKTIEQNE 95 (97)
Q Consensus 38 ksmhpstqddieynlseiksfenqilais--------------nklekgqkpkylhlkeaiqkivktieqne 95 (97)
-+.|-.+|-||-|.-+..+..++-+..+. .|..+.-+|-.+|- -+.+-|.++++.|.
T Consensus 193 ~~lhGvtq~~il~~k~~~~g~~~~~fd~as~an~hL~~AR~l~~kVP~~vrp~ll~t-v~td~~l~~l~k~n 263 (292)
T KOG4411 193 MSLHGVTQLDILYKKKKLDGMVGMTFDLASEANRHLIDARSLIEKVPKAVRPALLAT-VTTDYILKTLEKNN 263 (292)
T ss_pred HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHCC
T ss_conf 987399788888603321325557999999999999987747653778787899986-10999999998715
No 16
>pfam03310 Cauli_DNA-bind Caulimovirus DNA-binding protein.
Probab=22.02 E-value=75 Score=14.81 Aligned_cols=48 Identities=29% Similarity=0.361 Sum_probs=36.7
Q ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4011321699987345668885455524788600229999999999986
Q gi|254780220|r 44 TQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIE 92 (97)
Q Consensus 44 tqddieynlseiksfenqilaisnklekgqkpkylhlkeaiqkivktie 92 (97)
+|..|+--++++++.++.|-||-.++.-| +|.--.|...-.||++.|.
T Consensus 4 i~sEi~~~~~~~k~~~~~i~aiL~~~gs~-~p~~~~LE~iaAKIIkDit 51 (121)
T pfam03310 4 ILSEIRELIQSQKKTANEIKAILERNGSG-KPESTGLEEVAAKIIKDLT 51 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999994789-9752108999999999999
No 17
>PRK11415 hypothetical protein; Provisional
Probab=20.54 E-value=33 Score=16.85 Aligned_cols=42 Identities=26% Similarity=0.134 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 987345668885455524788600229999999999986420
Q gi|254780220|r 54 EIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNE 95 (97)
Q Consensus 54 eiksfenqilaisnklekgqkpkylhlkeaiqkivktieqne 95 (97)
+|+..|..+-+.++---.--|-.-||||+.+++|.+.-..+|
T Consensus 32 eI~~lE~~~~~~~~~eve~LKkeKL~LKDely~ILk~~s~k~ 73 (74)
T PRK11415 32 EIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQESVKE 73 (74)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999985788899828999999999852999999999976522
No 18
>PRK13680 hypothetical protein; Provisional
Probab=20.21 E-value=46 Score=16.04 Aligned_cols=21 Identities=43% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 963577899999984235578
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSDYV 21 (97)
Q Consensus 1 mkktqlllplltllsscsdyv 21 (97)
|||+-++|-++.|++|..-.+
T Consensus 5 mkk~G~~l~~lll~~s~~~~a 25 (121)
T PRK13680 5 MKKRGALLVLLLLACSSVFSA 25 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 766529999999998877766
No 19
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=20.08 E-value=64 Score=15.18 Aligned_cols=22 Identities=45% Similarity=0.630 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9635778999999842355787
Q gi|254780220|r 1 MKKTQLLLPLLTLLSSCSDYVY 22 (97)
Q Consensus 1 mkktqlllplltllsscsdyvy 22 (97)
|||.-+++-++..|+.|+....
T Consensus 1 Mkk~~~l~~~~l~LagCas~~~ 22 (26)
T pfam08139 1 MKKLLLLLLALLLLAGCASXXX 22 (26)
T ss_pred CHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9669999999999823320013
Done!