Query gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 19:00:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780220.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f6n_A Virion-associated prote 26.3 37 0.0016 15.3 4.1 47 45-92 8-54 (129)
2 2oxl_A Hypothetical protein YM 15.9 63 0.0026 14.0 3.5 32 5-36 28-59 (64)
3 3fn2_A Putative sensor histidi 10.7 55 0.0023 14.3 0.4 12 54-65 93-104 (106)
4 1np3_A Ketol-acid reductoisome 10.0 95 0.004 12.9 3.9 78 14-94 202-284 (338)
5 3h9i_A Cation efflux system pr 8.6 60 0.0025 14.1 0.0 47 1-47 1-56 (407)
6 3k4t_A Virion-associated prote 8.5 1.1E+02 0.0046 12.6 4.8 47 44-91 7-53 (95)
7 2i5u_A DNAD domain protein; st 6.7 1.3E+02 0.0056 12.1 1.8 51 24-77 2-60 (83)
8 1wgl_A TOLL-interacting protei 6.5 1.4E+02 0.0058 12.0 1.7 20 30-49 9-28 (59)
9 2gsv_A Hypothetical protein YV 6.1 1.5E+02 0.0061 11.9 2.6 57 30-89 10-68 (80)
10 1ddz_A Carbonic anhydrase; alp 5.9 1.5E+02 0.0062 11.8 1.8 37 42-78 34-70 (496)
No 1
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus}
Probab=26.35 E-value=37 Score=15.30 Aligned_cols=47 Identities=32% Similarity=0.356 Sum_probs=33.8
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 011321699987345668885455524788600229999999999986
Q gi|254780220|r 45 QDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIE 92 (97)
Q Consensus 45 qddieynlseiksfenqilaisnklekgqkpkylhlkeaiqkivktie 92 (97)
++.|.--++++|+..+.|-+|..++.- +.|.--.|..+-.||++.|-
T Consensus 8 ~~ei~~~l~~~k~l~~di~~il~~~~S-~~~~~~~lEsiAAKIIkDis 54 (129)
T 3f6n_A 8 QKEVSEILSDQKSMKADIKAILELLGS-QNPIKESLETVAAKIVNDLT 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999974279-97203468999999999999
No 2
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding protein, dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=15.95 E-value=63 Score=14.00 Aligned_cols=32 Identities=34% Similarity=0.584 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999984235578779998876656888
Q gi|254780220|r 5 QLLLPLLTLLSSCSDYVYEDAIRSQFENEIRY 36 (97)
Q Consensus 5 qlllplltllsscsdyvyedairsqfeneiry 36 (97)
.+.+-|...|.+-+|-+--|.+|+-.|--..+
T Consensus 28 aIIl~LI~~LE~e~Dvv~~DvyR~~LEiVv~~ 59 (64)
T 2oxl_A 28 NIILSLIHSLETTSDILKADVIRKTLEIVLRY 59 (64)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999985210399999999999999712
No 3
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=10.71 E-value=55 Score=14.33 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 987345668885
Q gi|254780220|r 54 EIKSFENQILAI 65 (97)
Q Consensus 54 eiksfenqilai 65 (97)
.-|+||++||.-
T Consensus 93 D~K~Fee~IlE~ 104 (106)
T 3fn2_A 93 DEKMFEEEILEK 104 (106)
T ss_dssp EHHHHHHHHC--
T ss_pred CHHHHHHHHHHH
T ss_conf 187899998760
No 4
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=10.03 E-value=95 Score=12.94 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHH
Q ss_conf 8423557877999887665688887418874011321699987345668885455524788-----60022999999999
Q gi|254780220|r 14 LSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQK-----PKYLHLKEAIQKIV 88 (97)
Q Consensus 14 lsscsdyvyedairsqfeneiryyksmhpstqddieynlseiksfenqilaisnklekgqk-----pkylhlkeaiqkiv 88 (97)
+..+....||.-+..-+.-|.-||.++|--+ .-.++---+.+...-..|||.-|.|.- -.+-.+++...++.
T Consensus 202 i~~lv~~~FEtLVEaGy~PE~AY~E~lhElk---lI~dlI~e~Gi~~M~~~iSdTAEyG~y~~g~~ii~~~~k~~mkevl 278 (338)
T 1np3_A 202 CVELVKAGFETLVEAGYAPEMAYFECLHELK---LIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNAL 278 (338)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999859977999999999899---9999999742999998628387777776062016588899999999
Q ss_pred HHHHHH
Q ss_conf 998642
Q gi|254780220|r 89 KTIEQN 94 (97)
Q Consensus 89 ktieqn 94 (97)
+.|.-.
T Consensus 279 ~dIqsG 284 (338)
T 1np3_A 279 KRIQDG 284 (338)
T ss_dssp HHHHTT
T ss_pred HHHCCC
T ss_conf 877088
No 5
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=8.65 E-value=60 Score=14.10 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHH--HHHHH--HH----HHHHHHHHHHHH-HHHHCCCCCHHH
Q ss_conf 9635778999999842--35578--77----999887665688-887418874011
Q gi|254780220|r 1 MKKTQLLLPLLTLLSS--CSDYV--YE----DAIRSQFENEIR-YYKSMHPSTQDD 47 (97)
Q Consensus 1 mkktqlllplltllss--csdyv--ye----dairsqfeneir-yyksmhpstqdd 47 (97)
|||+-+++-.+....- ..-|- .. .+--+.-|..|. |+-+|||...-|
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~p~~~~~ 56 (407)
T 3h9i_A 1 MKKIALIIGSMIAGGIISAAGFTWVAKAEPPAEKTSTAERKILFWYDPMYPNTRFD 56 (407)
T ss_dssp --------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 95069999999999999998874313678864445567762279868989866789
No 6
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=8.48 E-value=1.1e+02 Score=12.58 Aligned_cols=47 Identities=32% Similarity=0.355 Sum_probs=32.0
Q ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 401132169998734566888545552478860022999999999998
Q gi|254780220|r 44 TQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTI 91 (97)
Q Consensus 44 tqddieynlseiksfenqilaisnklekgqkpkylhlkeaiqkivkti 91 (97)
-|+.|+--|+++||.+..|-+|-.+|. .|.|+--.|...-.||+..+
T Consensus 7 IqkEvs~vl~~qKS~k~dI~aILa~lG-St~~~~~nlEavAAKIi~Dl 53 (95)
T 3k4t_A 7 IQKEVSEILSDQKSMKADIKAILELLG-SQNPIKESLETVAAKIVNDL 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999988999999856-89975130999999999999
No 7
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.50A {Enterococcus faecalis V583} SCOP: a.275.1.1
Probab=6.70 E-value=1.3e+02 Score=12.09 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHH--------HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999887665688887418874011321699987--------345668885455524788600
Q gi|254780220|r 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIK--------SFENQILAISNKLEKGQKPKY 77 (97)
Q Consensus 24 dairsqfeneiryyksmhpstqddieynlseik--------sfenqilaisnklekgqkpky 77 (97)
++|++-||+. ....+-|.+.++|.+-+.+.. +.+--+.|+..-+++| +|.+
T Consensus 2 ~~i~~~ye~n--~fG~lsp~e~e~i~~W~dd~~~~~~~~~~~~elI~~A~~~av~~~-~~n~ 60 (83)
T 2i5u_A 2 NAIRSIWENN--GFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDAN-ARNY 60 (83)
T ss_dssp HHHHHHHHTT--TSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHT-CCSH
T ss_pred CHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCH
T ss_conf 1799999984--877788899999999999975001233599999999999999959-9987
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=6.49 E-value=1.4e+02 Score=12.02 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCCHHHHH
Q ss_conf 66568888741887401132
Q gi|254780220|r 30 FENEIRYYKSMHPSTQDDIE 49 (97)
Q Consensus 30 feneiryyksmhpstqddie 49 (97)
.|..+.+.|.|.|+...++-
T Consensus 9 ~ee~l~~LkeMFP~~D~~vI 28 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVI 28 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHH
T ss_conf 69999999998787779999
No 9
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=6.08 E-value=1.5e+02 Score=11.89 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
Q ss_conf 66568888741887401132169998734566888545552478--8600229999999999
Q gi|254780220|r 30 FENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQ--KPKYLHLKEAIQKIVK 89 (97)
Q Consensus 30 feneiryyksmhpstqddieynlseiksfenqilaisnklekgq--kpkylhlkeaiqkivk 89 (97)
|-...|-|-.|+++ .|.|.---+--+|.-..|++- .+.|.. --..-||.||-||+-+
T Consensus 10 f~~N~k~~i~mn~~-~dKIhAmNaYYrsVvstlvqD--qltKNA~vlkRiqHLdEAYqKVk~ 68 (80)
T 2gsv_A 10 FIENLKQHIEMNQS-EDKIHAMNSYYRSVVSTLVQD--QLTKNAVVLKRIQHLDEAYNKVKR 68 (80)
T ss_dssp HHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHHC--SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985900-889999999999999999999--997307999999999999999988
No 10
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1
Probab=5.92 E-value=1.5e+02 Score=11.84 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 8740113216999873456688854555247886002
Q gi|254780220|r 42 PSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYL 78 (97)
Q Consensus 42 pstqddieynlseiksfenqilaisnklekgqkpkyl 78 (97)
|+..+=++-|..-......+--..-.+|-+||.|+++
T Consensus 34 ~~~~~l~~~N~~~~~~~~~~~p~~f~~la~gQ~P~~l 70 (496)
T 1ddz_A 34 PGKSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYL 70 (496)
T ss_dssp CCSSHHHHHHHHHHHHHHHHCTTHHHHHHTCCCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEE
T ss_conf 4699999999999974133297999986279999769
Done!