Query gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 20:43:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780220.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xppa_ d.74.3.2 (A:) DNA-dire 23.1 25 0.0018 14.9 4.3 18 24-41 82-99 (99)
2 d1np3a1 a.100.1.2 (A:183-327) 7.3 73 0.0053 12.3 4.3 76 15-93 21-101 (145)
3 d2gsva1 a.23.7.1 (A:3-69) Hypo 7.0 75 0.0055 12.2 2.6 56 31-89 9-66 (67)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 5.8 87 0.0063 11.8 1.7 21 30-50 9-29 (59)
5 d2gs4a1 a.25.1.4 (A:3-161) Hyp 5.7 89 0.0065 11.7 4.5 40 47-88 7-46 (159)
6 d2hdca_ a.4.5.14 (A:) Genesis 5.5 91 0.0067 11.7 2.6 52 10-61 12-63 (97)
7 d1iyjb5 b.40.4.3 (B:2980-3117) 5.4 92 0.0067 11.7 2.7 22 72-93 95-116 (138)
8 d1v54k_ f.23.5.1 (K:) Mitochon 5.4 32 0.0023 14.3 -1.6 14 43-56 28-41 (49)
9 d1ek6a_ c.2.1.2 (A:) Uridine d 5.0 98 0.0071 11.5 2.6 29 67-96 312-342 (346)
10 d1cr5a2 d.31.1.1 (A:108-210) C 4.7 36 0.0026 14.0 -1.6 15 55-69 37-51 (103)
No 1
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.09 E-value=25 Score=14.93 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999887665688887418
Q gi|254780220|r 24 DAIRSQFENEIRYYKSMH 41 (97)
Q Consensus 24 dairsqfeneiryyksmh 41 (97)
+.++++|+.+++-|+|+|
T Consensus 82 ~~l~~~~~~~~~~~~~~~ 99 (99)
T d1xppa_ 82 EDLGTQFQKEFQRYESDH 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999876349
No 2
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.25 E-value=73 Score=12.25 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHH
Q ss_conf 42355787799988766568888741887401132169998734566888545552478-----8600229999999999
Q gi|254780220|r 15 SSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQ-----KPKYLHLKEAIQKIVK 89 (97)
Q Consensus 15 sscsdyvyedairsqfeneiryyksmhpstqddieynlseiksfenqilaisnklekgq-----kpkylhlkeaiqkivk 89 (97)
..+..--||--+..-+..|.-||.+.|-.+ .-.++---+.+.+-..+|||.-|.|. +.-+...|...+++.+
T Consensus 21 ~~~~~~~fe~lve~G~~pe~Ay~e~~he~~---lI~~li~~~Gl~~m~~~iSdTAeyG~y~~~~~~~~~~~k~~mk~~l~ 97 (145)
T d1np3a1 21 VELVKAGFETLVEAGYAPEMAYFECLHELK---LIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALK 97 (145)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999839869999999997011---36899999739999998530888999998778645977799999999
Q ss_pred HHHH
Q ss_conf 9864
Q gi|254780220|r 90 TIEQ 93 (97)
Q Consensus 90 tieq 93 (97)
.|..
T Consensus 98 ~Iqs 101 (145)
T d1np3a1 98 RIQD 101 (145)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9814
No 3
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=6.95 E-value=75 Score=12.17 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
Q ss_conf 6568888741887401132169998734566888545552478--8600229999999999
Q gi|254780220|r 31 ENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQ--KPKYLHLKEAIQKIVK 89 (97)
Q Consensus 31 eneiryyksmhpstqddieynlseiksfenqilaisnklekgq--kpkylhlkeaiqkivk 89 (97)
-...|-|-.|+|+ .|.|.---|--+|.-..+++- .|.|.. --.--||.||-||.-+
T Consensus 9 i~Nf~~~i~mn~~-~dkIhAmNaYYrsVvstlvqD--qltKNa~vlkRiqHLdEAY~KVk~ 66 (67)
T d2gsva1 9 IENLKQHIEMNQS-EDKIHAMNSYYRSVVSTLVQD--QLTKNAVVLKRIQHLDEAYNKVKR 66 (67)
T ss_dssp HHHHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHHC--SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9989999982910-889999999999999999999--997418999999999999998755
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=87 Score=11.81 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHH
Q ss_conf 665688887418874011321
Q gi|254780220|r 30 FENEIRYYKSMHPSTQDDIEY 50 (97)
Q Consensus 30 feneiryyksmhpstqddiey 50 (97)
.|..+.+.|.|.|+...++-.
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~ 29 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIR 29 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHH
T ss_conf 699999999987887799999
No 5
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia coli [TaxId: 562]}
Probab=5.65 E-value=89 Score=11.74 Aligned_cols=40 Identities=23% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 132169998734566888545552478860022999999999
Q gi|254780220|r 47 DIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIV 88 (97)
Q Consensus 47 dieynlseiksfenqilaisnklekgqkpkylhlkeaiqkiv 88 (97)
-...-|..+-+.|+|++..-.++.+ .-.|-.||.+++.-+
T Consensus 7 lfi~~L~d~y~aE~Q~~~al~~m~~--~a~~~eLk~~l~~H~ 46 (159)
T d2gs4a1 7 VFIHLLSDTYSAEKQLTRALAKLAR--ATSNEKLSQAFHAHL 46 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHH
T ss_conf 9999999999999999999999998--868999999999999
No 6
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.47 E-value=91 Score=11.68 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHH
Q ss_conf 9999842355787799988766568888741887401132169998734566
Q gi|254780220|r 10 LLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQ 61 (97)
Q Consensus 10 lltllsscsdyvyedairsqfeneiryyksmhpstqddieynlseiksfenq 61 (97)
-+.+++|-..-.--..|-..++....||+.-.+.=|.-|-.|||--+.|+..
T Consensus 12 ~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv 63 (97)
T d2hdca_ 12 TMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKI 63 (97)
T ss_dssp HHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCC
T ss_conf 9999869876842999999999868445678887025644650162530336
No 7
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.44 E-value=92 Score=11.66 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7886002299999999999864
Q gi|254780220|r 72 GQKPKYLHLKEAIQKIVKTIEQ 93 (97)
Q Consensus 72 gqkpkylhlkeaiqkivktieq 93 (97)
.+.||--||+|+.++.-.+|+.
T Consensus 95 S~~PK~~Hlqe~~~~Lk~~i~~ 116 (138)
T d1iyjb5 95 SASPKEAHFQERVTNMKHAIEN 116 (138)
T ss_dssp ESSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2794087999999999999998
No 8
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.37 E-value=32 Score=14.30 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=10.7
Q ss_pred CCHHHHHHCHHHHH
Q ss_conf 74011321699987
Q gi|254780220|r 43 STQDDIEYNLSEIK 56 (97)
Q Consensus 43 stqddieynlseik 56 (97)
-||-.||.|||.+-
T Consensus 28 ~TQ~gI~WnlSPVG 41 (49)
T d1v54k_ 28 ATQIGIEWNPSPVG 41 (49)
T ss_dssp HHHSCCCCCCCCTT
T ss_pred EEEEEEEECCCCCC
T ss_conf 35311236466544
No 9
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.04 E-value=98 Score=11.51 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHHC--CCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 55524--7886002299999999999864203
Q gi|254780220|r 67 NKLEK--GQKPKYLHLKEAIQKIVKTIEQNEK 96 (97)
Q Consensus 67 nklek--gqkpkylhlkeaiqkivktieqnek 96 (97)
.|..+ |-+|+| .++|.|+..++-..+|-.
T Consensus 312 ~k~~~~lgw~p~~-slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 312 SLAQEELGWTAAL-GLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp HHHHHTTCCCCCC-CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCCCC-CHHHHHHHHHHHHHHCHH
T ss_conf 9999987998688-899999999999995772
No 10
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=4.73 E-value=36 Score=13.99 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 873456688854555
Q gi|254780220|r 55 IKSFENQILAISNKL 69 (97)
Q Consensus 55 iksfenqilaisnkl 69 (97)
++.|+||+++..-++
T Consensus 37 ~~~F~~Q~ft~gQ~l 51 (103)
T d1cr5a2 37 VRCYESQIFSPTQYL 51 (103)
T ss_dssp HHHHTTCEECTTCEE
T ss_pred HHHHCCCCCCCCCEE
T ss_conf 998657788998699
Done!