RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.2 bits (73), Expect = 0.027
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 9   PLL-TLLSSCSDYVYEDAIRSQFENEIRYYKSM-------HPSTQDDIEYNLS 53
            L+  L+   ++ + E   R+  + E  + + +       +PS   D +Y LS
Sbjct: 182 VLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233



 Score = 24.5 bits (53), Expect = 5.7
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 15/72 (20%)

Query: 1    MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
            +  TQ   P LTL+   +   +ED ++S         K + P+      ++L E  +  +
Sbjct: 1726 LSATQFTQPALTLMEKAA---FED-LKS---------KGLIPADATFAGHSLGEYAALAS 1772

Query: 61   --QILAISNKLE 70
               +++I + +E
Sbjct: 1773 LADVMSIESLVE 1784


>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
           function, PSI-2, protein structure initiative; 1.44A
           {Methylobacillus flagellatus KT}
          Length = 286

 Score = 26.4 bits (56), Expect = 1.6
 Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 65  ISNK--LEKGQKPKYLHLKEAIQKIVKTIEQ 93
           +SN   L  G +  Y         ++  + +
Sbjct: 249 LSNARLLASGYQLIYPDYVSGYGALLAAMRE 279


>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
           DSS, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
          Length = 286

 Score = 26.4 bits (56), Expect = 1.7
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 55  IKSFENQILAISNKL---EKGQKPKYLHLKEAIQKIVKTIE 92
            +SF ++   + N     E G + KY + +  ++ +    E
Sbjct: 245 ARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQADAE 285


>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
           metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
           {Bacillus anthracis}
          Length = 330

 Score = 24.5 bits (52), Expect = 6.0
 Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 47  DIEYNLSEIKSFENQILAISN-KLEK--GQKPKYLHLKEAIQKIVKTIEQNEK 96
           +I   ++  ++ +   L  S+ K ++  G  P+Y+++K  I+      ++   
Sbjct: 274 EIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPN 326


>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
          hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
          2zxp_A 1ir6_A
          Length = 666

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 9/54 (16%)

Query: 49 EYNLSEIKSFENQILA---ISNKLEKGQKPKYLHLK---EAIQKIVKTIEQNEK 96
             +    +             K +       L LK   EA   + + + Q ++
Sbjct: 24 ALEVGPEAA---LAYWHRGFRRKEDLDPPLALLPLKGLREAAALLEEALRQGKR 74


>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
           biosynthesis, FEED-BACK inhibition, hexamer,
           transferase; HET: NLG ADP; 2.95A {Pseudomonas
           aeruginosa} SCOP: c.73.1.2
          Length = 300

 Score = 24.0 bits (51), Expect = 9.2
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 46  DDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVK 89
           D     L+ + + +   L     +  G  PK     EA+Q  V 
Sbjct: 224 DKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVT 267


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.312    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 776,160
Number of extensions: 30975
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 36
Length of query: 97
Length of database: 5,693,230
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,165,858
Effective search space: 141639172
Effective search space used: 141639172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)