RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 152

 Score = 23.0 bits (49), Expect = 8.1
 Identities = 4/27 (14%), Positives = 8/27 (29%)

Query: 20 YVYEDAIRSQFENEIRYYKSMHPSTQD 46
          Y             +  + S+ P T+ 
Sbjct: 18 YNDGRTTFHDSLALLDNFHSLRPRTRV 44


>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 145

 Score = 22.4 bits (48), Expect = 9.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 72 GQKPKYLHLKEAIQKIVKTIEQNEKE 97
          G +P Y+H +EA+ ++    ++  K 
Sbjct: 72 GNQPIYMHTEEALAELAGGDKKKLKH 97


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 22.4 bits (47), Expect = 9.9
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 10  LLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAIS 66
           +L L+    DYV E+    +    +     +       +   L      EN +    
Sbjct: 438 ILNLIRIAGDYVSEEVW-YRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGG 493


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,135
Number of extensions: 13959
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 20
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.5 bits)