BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
(97 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 195 bits (495), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN
Sbjct: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE
Sbjct: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 544
Score = 26.2 bits (56), Expect = 0.12, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 56 KSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQN 94
++F ++ L++ N+++ KY+HLK+A + +++ + +
Sbjct: 279 QTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHS 317
>gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 117
Score = 24.6 bits (52), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 5 QLLLPLLTLLSSCSD 19
+ L PLL LL SC D
Sbjct: 7 RFLFPLLALLGSCDD 21
>gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 21.9 bits (45), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 79 HLKEAIQKIVKTIEQN 94
H KE I K+V EQN
Sbjct: 89 HAKEIIDKVVAAAEQN 104
>gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 21.9 bits (45), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 KKTQLLLPLL-TLLSSCSD 19
K QL+L +L TLL SC+D
Sbjct: 4 KTKQLILAVLVTLLGSCAD 22
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 21.2 bits (43), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 26 IRSQFENEIRYYKSM 40
IRS+FE EI+ KS+
Sbjct: 918 IRSEFEREIKELKSV 932
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 20.4 bits (41), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 40 MHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQK-----PKYLHLKEAIQKIVKTIEQN 94
++P + ++E N E K ++++ + + KGQ+ P +Q I +I++N
Sbjct: 142 LYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201
Query: 95 EKE 97
E
Sbjct: 202 HPE 204
>gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 289
Score = 20.4 bits (41), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 15 SSCSDYVYEDAIRSQFENEIRYY 37
SS DYV+ D F+N Y
Sbjct: 234 SSLRDYVHIDGSIGYFQNAFSVY 256
>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 20.0 bits (40), Expect = 9.7, Method: Composition-based stats.
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 23 EDAIRSQFENEIRYYKSMHPSTQDD 47
ED++ + E+ + Y + +PS ++
Sbjct: 447 EDSVHMKSESTVSYLRERNPSISEE 471
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.312 0.129 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,038
Number of Sequences: 1233
Number of extensions: 2109
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 97
length of database: 328,796
effective HSP length: 61
effective length of query: 36
effective length of database: 253,583
effective search space: 9128988
effective search space used: 9128988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 31 (16.5 bits)