Query         gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Mon May 23 18:31:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780221.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bg1_B Nucleoporin NUP145; NP  39.1      28 0.00082   16.4   3.0   50    4-53     37-86  (96)
  2 >1zxa_A CGMP-dependent protein  31.7      40  0.0012   15.5   3.6   27   20-49     22-48  (67)
  3 >2z5k_A Transportin-1; nuclear  26.6      49  0.0015   15.0   3.4   26   30-61     13-38  (146)
  4 >1mqs_B SED5P, integral membra  24.2      49  0.0014   15.1   2.1   33   18-50      5-37  (50)
  5 >2f48_A Diphosphate--fructose-  23.6      41  0.0012   15.5   1.7   15   24-38      9-23  (72)
  6 >3jro_A Fusion protein of prot  22.8      25 0.00073   16.7   0.4   48    4-51     29-76  (88)
  7 >1z0k_B FYVE-finger-containing  22.1      60  0.0018   14.5   2.4   26   19-51     39-64  (69)
  8 >1yzm_A FYVE-finger-containing  19.6      68   0.002   14.2   2.4   26   19-51     21-46  (51)
  9 >2q6q_A Spindle POLE BODY comp  15.4      77  0.0023   14.0   1.6   18   34-51      4-21  (74)
 10 >3bj4_A Potassium voltage-gate  11.7      86  0.0025   13.7   0.9   30   67-96     12-41  (49)

No 1  
>>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B (B:166-261)
Probab=39.12  E-value=28  Score=16.40  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             58889999999995201122478899999987561203999999871789
Q gi|254780221|r    4 KTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAI   53 (97)
Q Consensus         4 ktkqlilavlvtllgscaddritelntllaeykeenlkirelqkelypai   53 (97)
                      +.+..-||+|++.+||+...--..+-.-|..+++.+-.|-+-...+|--+
T Consensus        37 ~~~d~rLA~Llsq~gs~~~~vr~~~~~QL~~W~~~~~~I~~~~~kiY~LL   86 (96)
T 3bg1_B           37 ESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYKLL   86 (96)
T ss_dssp             HTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             76994799999983389878999999999999866986787899999996


No 2  
>>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} (A:)
Probab=31.72  E-value=40  Score=15.55  Aligned_cols=27  Identities=41%  Similarity=0.665  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             112247889999998756120399999987
Q gi|254780221|r   20 CADDRITELNTLLAEYKEENLKIRELQKEL   49 (97)
Q Consensus        20 caddritelntllaeykeenlkirelqkel   49 (97)
                      --|.||.||..+|..-.+   .|.||+.+|
T Consensus        22 ~kd~rI~ELE~~L~~kd~---EI~eLrs~L   48 (67)
T 1zxa_A           22 LKEERIKELEKRLSEKEE---EIQELKRKL   48 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf             779999999999873389---999999999


No 3  
>>2z5k_A Transportin-1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* 2h4m_A 2ot8_A (A:516-661)
Probab=26.59  E-value=49  Score=15.04  Aligned_cols=26  Identities=42%  Similarity=0.644  Sum_probs=14.2

Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998756120399999987178999999988
Q gi|254780221|r   30 TLLAEYKEENLKIRELQKELYPAISTLAHRMD   61 (97)
Q Consensus        30 tllaeykeenlkirelqkelypaistlahrmd   61 (97)
                      .-+..|+..|+.|      ||-||+|+|.-+.
T Consensus        13 ~af~~YQ~kNl~I------LyDai~Tlad~vG   38 (146)
T 2z5k_A           13 FAFSKYQHKNLLI------LYDAIGTLADSVG   38 (146)
T ss_dssp             HHHTTCCSHHHHH------HHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHC
T ss_conf             9998765768999------9999999998712


No 4  
>>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (B:)
Probab=24.19  E-value=49  Score=15.06  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             201122478899999987561203999999871
Q gi|254780221|r   18 GSCADDRITELNTLLAEYKEENLKIRELQKELY   50 (97)
Q Consensus        18 gscaddritelntllaeykeenlkirelqkely   50 (97)
                      |--..||..|...-.-.||..|-..||-|.|-.
T Consensus         5 gmnikdrtsefqqsvlsykkrnknfreqqrerl   37 (50)
T 1mqs_B            5 GMNIKDRTSEFQQSVLSYKKRNKNFREQQRERL   37 (50)
T ss_dssp             HHHHHBCHHHHHHHHHHHHHHC-----------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             466312058999999999985121889999999


No 5  
>>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:316-387)
Probab=23.57  E-value=41  Score=15.45  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             478899999987561
Q gi|254780221|r   24 RITELNTLLAEYKEE   38 (97)
Q Consensus        24 ritelntllaeykee   38 (97)
                      -|.|||.+||+.+.+
T Consensus         9 LI~ELN~iLa~~~~~   23 (72)
T 2f48_A            9 LMLELCDIFDKNEGE   23 (72)
T ss_dssp             HHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             889876554202210


No 6  
>>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} (A:483-570)
Probab=22.78  E-value=25  Score=16.67  Aligned_cols=48  Identities=21%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             588899999999952011224788999999875612039999998717
Q gi|254780221|r    4 KTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYP   51 (97)
Q Consensus         4 ktkqlilavlvtllgscaddritelntllaeykeenlkirelqkelyp   51 (97)
                      +.+..-||+|++.+||+...--..+-.-|..+++.+-.|-+-...+|-
T Consensus        29 ~~~d~rLA~Llsq~gs~~~~vr~~~~~QL~~W~~~~~~I~~~~~kiY~   76 (88)
T 3jro_A           29 ESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYK   76 (88)
T ss_dssp             HTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             849955899999743898899999999999998658855757999999


No 7  
>>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:)
Probab=22.09  E-value=60  Score=14.54  Aligned_cols=26  Identities=46%  Similarity=0.606  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             011224788999999875612039999998717
Q gi|254780221|r   19 SCADDRITELNTLLAEYKEENLKIRELQKELYP   51 (97)
Q Consensus        19 scaddritelntllaeykeenlkirelqkelyp   51 (97)
                      .-++.|.-|..+|     |+||  ||||.|+|-
T Consensus        39 Ak~a~r~dEV~~L-----e~NL--reLq~e~~~   64 (69)
T 1z0k_B           39 AKAAGRMDEVRTL-----QENL--RQLQDEYDQ   64 (69)
T ss_dssp             HHHTTCHHHHHHH-----HHHH--HHHHHHHHH
T ss_pred             HHHHCCCHHHHHH-----HHHH--HHHHHHHHH
T ss_conf             9981441899999-----9999--999999999


No 8  
>>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:)
Probab=19.62  E-value=68  Score=14.25  Aligned_cols=26  Identities=46%  Similarity=0.606  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             011224788999999875612039999998717
Q gi|254780221|r   19 SCADDRITELNTLLAEYKEENLKIRELQKELYP   51 (97)
Q Consensus        19 scaddritelntllaeykeenlkirelqkelyp   51 (97)
                      .-++.|..|..+|     |+||  ||||.|++-
T Consensus        21 Ak~a~R~DEV~~L-----e~NL--reLq~e~~~   46 (51)
T 1yzm_A           21 AKAAGRMDEVRTL-----QENL--RQLQDEYDQ   46 (51)
T ss_dssp             HHHTTCHHHHHHH-----HHHH--HHHHHHHHH
T ss_pred             HHHHCCHHHHHHH-----HHHH--HHHHHHHHH
T ss_conf             9983342899999-----9999--999999999


No 9  
>>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, coiled coil, cell cycle; 1.97A {Saccharomyces cerevisiae} (A:)
Probab=15.45  E-value=77  Score=13.97  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=12.6

Q ss_pred             HHHHHCHHHHHHHHHHHH
Q ss_conf             875612039999998717
Q gi|254780221|r   34 EYKEENLKIRELQKELYP   51 (97)
Q Consensus        34 eykeenlkirelqkelyp   51 (97)
                      .-||-|.|.||-|.|.+.
T Consensus         4 qnkelnfklrekqneife   21 (74)
T 2q6q_A            4 QNKELNFKLREKQNEIFE   21 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHCHHHHHHHHHHHH
T ss_conf             012323368877638998


No 10 
>>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} (A:)
Probab=11.66  E-value=86  Score=13.70  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             223668998405619999997511011102
Q gi|254780221|r   67 SDALDPILRRMDGPVKHVERRINSKTTTLE   96 (97)
Q Consensus        67 sdaldpilrrmdgpvkhverrinsktttle   96 (97)
                      +.....-|.||+..|.|..++.|+-|..|.
T Consensus        12 ~NtIGaRLNRvedKvtqmDq~Ln~itdmLh   41 (49)
T 3bj4_A           12 SNTIGARLNRVEDKVTQLDQRLALITDMLH   41 (49)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             543988998899999999999999999999


Done!