Query gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 97 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 18:31:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780221.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bg1_B Nucleoporin NUP145; NP 39.1 28 0.00082 16.4 3.0 50 4-53 37-86 (96) 2 >1zxa_A CGMP-dependent protein 31.7 40 0.0012 15.5 3.6 27 20-49 22-48 (67) 3 >2z5k_A Transportin-1; nuclear 26.6 49 0.0015 15.0 3.4 26 30-61 13-38 (146) 4 >1mqs_B SED5P, integral membra 24.2 49 0.0014 15.1 2.1 33 18-50 5-37 (50) 5 >2f48_A Diphosphate--fructose- 23.6 41 0.0012 15.5 1.7 15 24-38 9-23 (72) 6 >3jro_A Fusion protein of prot 22.8 25 0.00073 16.7 0.4 48 4-51 29-76 (88) 7 >1z0k_B FYVE-finger-containing 22.1 60 0.0018 14.5 2.4 26 19-51 39-64 (69) 8 >1yzm_A FYVE-finger-containing 19.6 68 0.002 14.2 2.4 26 19-51 21-46 (51) 9 >2q6q_A Spindle POLE BODY comp 15.4 77 0.0023 14.0 1.6 18 34-51 4-21 (74) 10 >3bj4_A Potassium voltage-gate 11.7 86 0.0025 13.7 0.9 30 67-96 12-41 (49) No 1 >>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B (B:166-261) Probab=39.12 E-value=28 Score=16.40 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH Q ss_conf 58889999999995201122478899999987561203999999871789 Q gi|254780221|r 4 KTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAI 53 (97) Q Consensus 4 ktkqlilavlvtllgscaddritelntllaeykeenlkirelqkelypai 53 (97) +.+..-||+|++.+||+...--..+-.-|..+++.+-.|-+-...+|--+ T Consensus 37 ~~~d~rLA~Llsq~gs~~~~vr~~~~~QL~~W~~~~~~I~~~~~kiY~LL 86 (96) T 3bg1_B 37 ESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYKLL 86 (96) T ss_dssp HTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 76994799999983389878999999999999866986787899999996 No 2 >>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} (A:) Probab=31.72 E-value=40 Score=15.55 Aligned_cols=27 Identities=41% Similarity=0.665 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 112247889999998756120399999987 Q gi|254780221|r 20 CADDRITELNTLLAEYKEENLKIRELQKEL 49 (97) Q Consensus 20 caddritelntllaeykeenlkirelqkel 49 (97) --|.||.||..+|..-.+ .|.||+.+| T Consensus 22 ~kd~rI~ELE~~L~~kd~---EI~eLrs~L 48 (67) T 1zxa_A 22 LKEERIKELEKRLSEKEE---EIQELKRKL 48 (67) T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH T ss_conf 779999999999873389---999999999 No 3 >>2z5k_A Transportin-1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* 2h4m_A 2ot8_A (A:516-661) Probab=26.59 E-value=49 Score=15.04 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=14.2 Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998756120399999987178999999988 Q gi|254780221|r 30 TLLAEYKEENLKIRELQKELYPAISTLAHRMD 61 (97) Q Consensus 30 tllaeykeenlkirelqkelypaistlahrmd 61 (97) .-+..|+..|+.| ||-||+|+|.-+. T Consensus 13 ~af~~YQ~kNl~I------LyDai~Tlad~vG 38 (146) T 2z5k_A 13 FAFSKYQHKNLLI------LYDAIGTLADSVG 38 (146) T ss_dssp HHHTTCCSHHHHH------HHHHHHHHHHHHG T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHC T ss_conf 9998765768999------9999999998712 No 4 >>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (B:) Probab=24.19 E-value=49 Score=15.06 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 201122478899999987561203999999871 Q gi|254780221|r 18 GSCADDRITELNTLLAEYKEENLKIRELQKELY 50 (97) Q Consensus 18 gscaddritelntllaeykeenlkirelqkely 50 (97) |--..||..|...-.-.||..|-..||-|.|-. T Consensus 5 gmnikdrtsefqqsvlsykkrnknfreqqrerl 37 (50) T 1mqs_B 5 GMNIKDRTSEFQQSVLSYKKRNKNFREQQRERL 37 (50) T ss_dssp HHHHHBCHHHHHHHHHHHHHHC----------- T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 466312058999999999985121889999999 No 5 >>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:316-387) Probab=23.57 E-value=41 Score=15.45 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 478899999987561 Q gi|254780221|r 24 RITELNTLLAEYKEE 38 (97) Q Consensus 24 ritelntllaeykee 38 (97) -|.|||.+||+.+.+ T Consensus 9 LI~ELN~iLa~~~~~ 23 (72) T 2f48_A 9 LMLELCDIFDKNEGE 23 (72) T ss_dssp HHHHHHHHHHHSHHH T ss_pred HHHHHHHHHHHCCCC T ss_conf 889876554202210 No 6 >>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} (A:483-570) Probab=22.78 E-value=25 Score=16.67 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 588899999999952011224788999999875612039999998717 Q gi|254780221|r 4 KTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYP 51 (97) Q Consensus 4 ktkqlilavlvtllgscaddritelntllaeykeenlkirelqkelyp 51 (97) +.+..-||+|++.+||+...--..+-.-|..+++.+-.|-+-...+|- T Consensus 29 ~~~d~rLA~Llsq~gs~~~~vr~~~~~QL~~W~~~~~~I~~~~~kiY~ 76 (88) T 3jro_A 29 ESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYK 76 (88) T ss_dssp HTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 849955899999743898899999999999998658855757999999 No 7 >>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:) Probab=22.09 E-value=60 Score=14.54 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 011224788999999875612039999998717 Q gi|254780221|r 19 SCADDRITELNTLLAEYKEENLKIRELQKELYP 51 (97) Q Consensus 19 scaddritelntllaeykeenlkirelqkelyp 51 (97) .-++.|.-|..+| |+|| ||||.|+|- T Consensus 39 Ak~a~r~dEV~~L-----e~NL--reLq~e~~~ 64 (69) T 1z0k_B 39 AKAAGRMDEVRTL-----QENL--RQLQDEYDQ 64 (69) T ss_dssp HHHTTCHHHHHHH-----HHHH--HHHHHHHHH T ss_pred HHHHCCCHHHHHH-----HHHH--HHHHHHHHH T ss_conf 9981441899999-----9999--999999999 No 8 >>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:) Probab=19.62 E-value=68 Score=14.25 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 011224788999999875612039999998717 Q gi|254780221|r 19 SCADDRITELNTLLAEYKEENLKIRELQKELYP 51 (97) Q Consensus 19 scaddritelntllaeykeenlkirelqkelyp 51 (97) .-++.|..|..+| |+|| ||||.|++- T Consensus 21 Ak~a~R~DEV~~L-----e~NL--reLq~e~~~ 46 (51) T 1yzm_A 21 AKAAGRMDEVRTL-----QENL--RQLQDEYDQ 46 (51) T ss_dssp HHHTTCHHHHHHH-----HHHH--HHHHHHHHH T ss_pred HHHHCCHHHHHHH-----HHHH--HHHHHHHHH T ss_conf 9983342899999-----9999--999999999 No 9 >>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, coiled coil, cell cycle; 1.97A {Saccharomyces cerevisiae} (A:) Probab=15.45 E-value=77 Score=13.97 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=12.6 Q ss_pred HHHHHCHHHHHHHHHHHH Q ss_conf 875612039999998717 Q gi|254780221|r 34 EYKEENLKIRELQKELYP 51 (97) Q Consensus 34 eykeenlkirelqkelyp 51 (97) .-||-|.|.||-|.|.+. T Consensus 4 qnkelnfklrekqneife 21 (74) T 2q6q_A 4 QNKELNFKLREKQNEIFE 21 (74) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred CCHHHCHHHHHHHHHHHH T ss_conf 012323368877638998 No 10 >>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} (A:) Probab=11.66 E-value=86 Score=13.70 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=21.4 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCC Q ss_conf 223668998405619999997511011102 Q gi|254780221|r 67 SDALDPILRRMDGPVKHVERRINSKTTTLE 96 (97) Q Consensus 67 sdaldpilrrmdgpvkhverrinsktttle 96 (97) +.....-|.||+..|.|..++.|+-|..|. T Consensus 12 ~NtIGaRLNRvedKvtqmDq~Ln~itdmLh 41 (49) T 3bj4_A 12 SNTIGARLNRVEDKVTQLDQRLALITDMLH 41 (49) T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 543988998899999999999999999999 Done!