Query gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 97 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 18:40:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780221.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1z0k_B FYVE-finger-containing 25.2 35 0.0015 15.0 2.4 27 18-51 38-64 (69) 2 1mqs_B SED5P, integral membran 24.2 34 0.0014 15.1 2.1 33 18-50 5-37 (50) 3 2q6q_A Spindle POLE BODY compo 15.4 54 0.0023 14.0 1.6 18 34-51 4-21 (74) 4 1yzm_A FYVE-finger-containing 14.7 64 0.0027 13.6 2.4 25 19-50 21-45 (51) 5 2qho_B E3 ubiquitin-protein li 9.8 67 0.0028 13.5 0.6 27 22-49 10-36 (53) 6 3bj4_A Potassium voltage-gated 8.4 94 0.004 12.6 0.9 30 67-96 12-41 (49) 7 1avo_A 11S regulator; proteaso 8.1 1.1E+02 0.0046 12.3 3.3 26 9-34 18-43 (60) 8 3n7n_E Monopolin complex subun 8.0 66 0.0028 13.5 0.0 24 25-48 52-75 (95) 9 2gv5_C SFI1P; centrin, CDC31P, 7.5 1.2E+02 0.0049 12.1 3.1 26 27-54 6-31 (73) 10 1xr4_A Putative citrate lyase 7.4 34 0.0014 15.0 -1.7 41 13-53 437-477 (509) No 1 >1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1 Probab=25.24 E-value=35 Score=14.98 Aligned_cols=27 Identities=44% Similarity=0.571 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 2011224788999999875612039999998717 Q gi|254780221|r 18 GSCADDRITELNTLLAEYKEENLKIRELQKELYP 51 (97) Q Consensus 18 gscaddritelntllaeykeenlkirelqkelyp 51 (97) -.-++.|.-|..+| |+|| ||||.|+|- T Consensus 38 QAk~a~r~dEV~~L-----e~NL--reLq~e~~~ 64 (69) T 1z0k_B 38 QAKAAGRMDEVRTL-----QENL--RQLQDEYDQ 64 (69) T ss_dssp HHHHTTCHHHHHHH-----HHHH--HHHHHHHHH T ss_pred HHHHHCCCHHHHHH-----HHHH--HHHHHHHHH T ss_conf 99994340899999-----9999--999999999 No 2 >1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Probab=24.19 E-value=34 Score=15.06 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 201122478899999987561203999999871 Q gi|254780221|r 18 GSCADDRITELNTLLAEYKEENLKIRELQKELY 50 (97) Q Consensus 18 gscaddritelntllaeykeenlkirelqkely 50 (97) |--..||..|...-.-.||..|-..||-|.|-. T Consensus 5 gmnikdrtsefqqsvlsykkrnknfreqqrerl 37 (50) T 1mqs_B 5 GMNIKDRTSEFQQSVLSYKKRNKNFREQQRERL 37 (50) T ss_dssp HHHHHBCHHHHHHHHHHHHHHC----------- T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 466312058999999999985121889999999 No 3 >2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, coiled coil, cell cycle; 1.97A {Saccharomyces cerevisiae} Probab=15.45 E-value=54 Score=13.97 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=12.6 Q ss_pred HHHHHCHHHHHHHHHHHH Q ss_conf 875612039999998717 Q gi|254780221|r 34 EYKEENLKIRELQKELYP 51 (97) Q Consensus 34 eykeenlkirelqkelyp 51 (97) .-||-|.|.||-|.|.+. T Consensus 4 qnkelnfklrekqneife 21 (74) T 2q6q_A 4 QNKELNFKLREKQNEIFE 21 (74) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred CCHHHCHHHHHHHHHHHH T ss_conf 012323368877638998 No 4 >1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1 Probab=14.70 E-value=64 Score=13.57 Aligned_cols=25 Identities=48% Similarity=0.632 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 01122478899999987561203999999871 Q gi|254780221|r 19 SCADDRITELNTLLAEYKEENLKIRELQKELY 50 (97) Q Consensus 19 scaddritelntllaeykeenlkirelqkely 50 (97) .-++.|..|..+| |+|| ||||.+++ T Consensus 21 Ar~a~R~dEV~~L-----e~NL--reLq~e~~ 45 (51) T 1yzm_A 21 AKAAGRMDEVRTL-----QENL--RQLQDEYD 45 (51) T ss_dssp HHHTTCHHHHHHH-----HHHH--HHHHHHHH T ss_pred HHHHCCHHHHHHH-----HHHH--HHHHHHHH T ss_conf 9985342899999-----9999--99999999 No 5 >2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens} Probab=9.85 E-value=67 Score=13.45 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 2247889999998756120399999987 Q gi|254780221|r 22 DDRITELNTLLAEYKEENLKIRELQKEL 49 (97) Q Consensus 22 ddritelntllaeykeenlkirelqkel 49 (97) +|-|......| .-|..++-|||||+.- T Consensus 10 e~Li~q~q~VL-QgKSR~vIiRELQrt~ 36 (53) T 2qho_B 10 EELISQAQVVL-QGKSRSVIIRELQRTN 36 (53) T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHHHTT T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHCC T ss_conf 99999999999-5532899999999817 No 6 >3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} Probab=8.41 E-value=94 Score=12.64 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=20.2 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCC Q ss_conf 223668998405619999997511011102 Q gi|254780221|r 67 SDALDPILRRMDGPVKHVERRINSKTTTLE 96 (97) Q Consensus 67 sdaldpilrrmdgpvkhverrinsktttle 96 (97) |.....-|.|+...|.|..++.|+-|..|. T Consensus 12 ~ntigarlnrvedk~t~mDq~Ln~itdmLh 41 (49) T 3bj4_A 12 SNTIGARLNRVEDKVTQLDQRLALITDMLH 41 (49) T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 542989998899999999999999999999 No 7 >1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Probab=8.10 E-value=1.1e+02 Score=12.28 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999520112247889999998 Q gi|254780221|r 9 ILAVLVTLLGSCADDRITELNTLLAE 34 (97) Q Consensus 9 ilavlvtllgscaddritelntllae 34 (97) +..---+|+.++--..|.|||.||.+ T Consensus 18 L~~eAE~Lv~~ffP~KI~eLd~lLk~ 43 (60) T 1avo_A 18 LCTKTENLLGSYFPKKISELDAFLKE 43 (60) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999996727999999998665 No 8 >3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae} Probab=8.03 E-value=66 Score=13.48 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 788999999875612039999998 Q gi|254780221|r 25 ITELNTLLAEYKEENLKIRELQKE 48 (97) Q Consensus 25 itelntllaeykeenlkirelqke 48 (97) |..|+.-+---+.||-+.+|+||. T Consensus 52 i~qLt~dlq~~~~Ene~Lke~qKt 75 (95) T 3n7n_E 52 IAQLNKQLQLSFQENEKLLSVQKN 75 (95) T ss_dssp ------------------------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999989999999999 No 9 >2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae} Probab=7.46 E-value=1.2e+02 Score=12.12 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHH Q ss_conf 8999999875612039999998717899 Q gi|254780221|r 27 ELNTLLAEYKEENLKIRELQKELYPAIS 54 (97) Q Consensus 27 elntllaeykeenlkirelqkelypais 54 (97) .||..|.-|. .-|-||||..|+.|-. T Consensus 6 klndilhvye--kskerelqsqlfnawr 31 (73) T 2gv5_C 6 KLNDILHVYE--KSKERELQSQLFNAWR 31 (73) T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHH T ss_conf 7889999998--7267899999999998 No 10 >1xr4_A Putative citrate lyase alpha chain/citrate-ACP transferase; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium LT2} SCOP: c.124.1.2 c.124.1.2 Probab=7.38 E-value=34 Score=15.05 Aligned_cols=41 Identities=22% Similarity=0.128 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH Q ss_conf 99995201122478899999987561203999999871789 Q gi|254780221|r 13 LVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAI 53 (97) Q Consensus 13 lvtllgscaddritelntllaeykeenlkirelqkelypai 53 (97) +||-.|.+...+-.++.-.+.||.-.+++|++|+..-+--| T Consensus 437 iVTe~GiaV~~~R~dl~~~~te~gi~~l~~~~l~erA~~li 477 (509) T 1xr4_A 437 LVTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLT 477 (509) T ss_dssp EEETTEEEECTTCHHHHHHHHHTTCCCBCHHHHHHHHHHHH T ss_pred EECCCCCEECCCHHHHHHHHHHCCCCEECCCHHHHHHHHHH T ss_conf 98889703368656678998755976113622999999996 Done!