Query         gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 18:40:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780221.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1z0k_B FYVE-finger-containing   25.2      35  0.0015   15.0   2.4   27   18-51     38-64  (69)
  2 1mqs_B SED5P, integral membran  24.2      34  0.0014   15.1   2.1   33   18-50      5-37  (50)
  3 2q6q_A Spindle POLE BODY compo  15.4      54  0.0023   14.0   1.6   18   34-51      4-21  (74)
  4 1yzm_A FYVE-finger-containing   14.7      64  0.0027   13.6   2.4   25   19-50     21-45  (51)
  5 2qho_B E3 ubiquitin-protein li   9.8      67  0.0028   13.5   0.6   27   22-49     10-36  (53)
  6 3bj4_A Potassium voltage-gated   8.4      94   0.004   12.6   0.9   30   67-96     12-41  (49)
  7 1avo_A 11S regulator; proteaso   8.1 1.1E+02  0.0046   12.3   3.3   26    9-34     18-43  (60)
  8 3n7n_E Monopolin complex subun   8.0      66  0.0028   13.5   0.0   24   25-48     52-75  (95)
  9 2gv5_C SFI1P; centrin, CDC31P,   7.5 1.2E+02  0.0049   12.1   3.1   26   27-54      6-31  (73)
 10 1xr4_A Putative citrate lyase    7.4      34  0.0014   15.0  -1.7   41   13-53    437-477 (509)

No 1  
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.24  E-value=35  Score=14.98  Aligned_cols=27  Identities=44%  Similarity=0.571  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             2011224788999999875612039999998717
Q gi|254780221|r   18 GSCADDRITELNTLLAEYKEENLKIRELQKELYP   51 (97)
Q Consensus        18 gscaddritelntllaeykeenlkirelqkelyp   51 (97)
                      -.-++.|.-|..+|     |+||  ||||.|+|-
T Consensus        38 QAk~a~r~dEV~~L-----e~NL--reLq~e~~~   64 (69)
T 1z0k_B           38 QAKAAGRMDEVRTL-----QENL--RQLQDEYDQ   64 (69)
T ss_dssp             HHHHTTCHHHHHHH-----HHHH--HHHHHHHHH
T ss_pred             HHHHHCCCHHHHHH-----HHHH--HHHHHHHHH
T ss_conf             99994340899999-----9999--999999999


No 2  
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=24.19  E-value=34  Score=15.06  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             201122478899999987561203999999871
Q gi|254780221|r   18 GSCADDRITELNTLLAEYKEENLKIRELQKELY   50 (97)
Q Consensus        18 gscaddritelntllaeykeenlkirelqkely   50 (97)
                      |--..||..|...-.-.||..|-..||-|.|-.
T Consensus         5 gmnikdrtsefqqsvlsykkrnknfreqqrerl   37 (50)
T 1mqs_B            5 GMNIKDRTSEFQQSVLSYKKRNKNFREQQRERL   37 (50)
T ss_dssp             HHHHHBCHHHHHHHHHHHHHHC-----------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             466312058999999999985121889999999


No 3  
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, coiled coil, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=15.45  E-value=54  Score=13.97  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=12.6

Q ss_pred             HHHHHCHHHHHHHHHHHH
Q ss_conf             875612039999998717
Q gi|254780221|r   34 EYKEENLKIRELQKELYP   51 (97)
Q Consensus        34 eykeenlkirelqkelyp   51 (97)
                      .-||-|.|.||-|.|.+.
T Consensus         4 qnkelnfklrekqneife   21 (74)
T 2q6q_A            4 QNKELNFKLREKQNEIFE   21 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHCHHHHHHHHHHHH
T ss_conf             012323368877638998


No 4  
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=14.70  E-value=64  Score=13.57  Aligned_cols=25  Identities=48%  Similarity=0.632  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             01122478899999987561203999999871
Q gi|254780221|r   19 SCADDRITELNTLLAEYKEENLKIRELQKELY   50 (97)
Q Consensus        19 scaddritelntllaeykeenlkirelqkely   50 (97)
                      .-++.|..|..+|     |+||  ||||.+++
T Consensus        21 Ar~a~R~dEV~~L-----e~NL--reLq~e~~   45 (51)
T 1yzm_A           21 AKAAGRMDEVRTL-----QENL--RQLQDEYD   45 (51)
T ss_dssp             HHHTTCHHHHHHH-----HHHH--HHHHHHHH
T ss_pred             HHHHCCHHHHHHH-----HHHH--HHHHHHHH
T ss_conf             9985342899999-----9999--99999999


No 5  
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=9.85  E-value=67  Score=13.45  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             2247889999998756120399999987
Q gi|254780221|r   22 DDRITELNTLLAEYKEENLKIRELQKEL   49 (97)
Q Consensus        22 ddritelntllaeykeenlkirelqkel   49 (97)
                      +|-|......| .-|..++-|||||+.-
T Consensus        10 e~Li~q~q~VL-QgKSR~vIiRELQrt~   36 (53)
T 2qho_B           10 EELISQAQVVL-QGKSRSVIIRELQRTN   36 (53)
T ss_dssp             HHHHHHHHHHS-TTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHCC
T ss_conf             99999999999-5532899999999817


No 6  
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=8.41  E-value=94  Score=12.64  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             223668998405619999997511011102
Q gi|254780221|r   67 SDALDPILRRMDGPVKHVERRINSKTTTLE   96 (97)
Q Consensus        67 sdaldpilrrmdgpvkhverrinsktttle   96 (97)
                      |.....-|.|+...|.|..++.|+-|..|.
T Consensus        12 ~ntigarlnrvedk~t~mDq~Ln~itdmLh   41 (49)
T 3bj4_A           12 SNTIGARLNRVEDKVTQLDQRLALITDMLH   41 (49)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             542989998899999999999999999999


No 7  
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=8.10  E-value=1.1e+02  Score=12.28  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999520112247889999998
Q gi|254780221|r    9 ILAVLVTLLGSCADDRITELNTLLAE   34 (97)
Q Consensus         9 ilavlvtllgscaddritelntllae   34 (97)
                      +..---+|+.++--..|.|||.||.+
T Consensus        18 L~~eAE~Lv~~ffP~KI~eLd~lLk~   43 (60)
T 1avo_A           18 LCTKTENLLGSYFPKKISELDAFLKE   43 (60)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999996727999999998665


No 8  
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=8.03  E-value=66  Score=13.48  Aligned_cols=24  Identities=38%  Similarity=0.380  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             788999999875612039999998
Q gi|254780221|r   25 ITELNTLLAEYKEENLKIRELQKE   48 (97)
Q Consensus        25 itelntllaeykeenlkirelqke   48 (97)
                      |..|+.-+---+.||-+.+|+||.
T Consensus        52 i~qLt~dlq~~~~Ene~Lke~qKt   75 (95)
T 3n7n_E           52 IAQLNKQLQLSFQENEKLLSVQKN   75 (95)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999989999999999


No 9  
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae}
Probab=7.46  E-value=1.2e+02  Score=12.12  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             8999999875612039999998717899
Q gi|254780221|r   27 ELNTLLAEYKEENLKIRELQKELYPAIS   54 (97)
Q Consensus        27 elntllaeykeenlkirelqkelypais   54 (97)
                      .||..|.-|.  .-|-||||..|+.|-.
T Consensus         6 klndilhvye--kskerelqsqlfnawr   31 (73)
T 2gv5_C            6 KLNDILHVYE--KSKERELQSQLFNAWR   31 (73)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf             7889999998--7267899999999998


No 10 
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP transferase; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium LT2} SCOP: c.124.1.2 c.124.1.2
Probab=7.38  E-value=34  Score=15.05  Aligned_cols=41  Identities=22%  Similarity=0.128  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             99995201122478899999987561203999999871789
Q gi|254780221|r   13 LVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAI   53 (97)
Q Consensus        13 lvtllgscaddritelntllaeykeenlkirelqkelypai   53 (97)
                      +||-.|.+...+-.++.-.+.||.-.+++|++|+..-+--|
T Consensus       437 iVTe~GiaV~~~R~dl~~~~te~gi~~l~~~~l~erA~~li  477 (509)
T 1xr4_A          437 LVTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLT  477 (509)
T ss_dssp             EEETTEEEECTTCHHHHHHHHHTTCCCBCHHHHHHHHHHHH
T ss_pred             EECCCCCEECCCHHHHHHHHHHCCCCEECCCHHHHHHHHHH
T ss_conf             98889703368656678998755976113622999999996


Done!