RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780221|ref|YP_003064634.1| hypothetical protein
CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>3g16_A Uncharacterized protein with cystatin-like fold;
           YP_001022489.1, protein of unknown function with
           cystatin- like fold; HET: MSE; 1.45A {Methylibium
           petroleiphilum PM1} (A:)
          Length = 156

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 21  ADDRITELNTLLAEYKEENLKIREL 45
           A   I E+    A  + E +   EL
Sbjct: 113 ASGLIREIRAFYASPQAEGIARLEL 137


>3jro_A Fusion protein of protein transport protein SEC13 and
          nucleoporin NUP145; protein complex, cytoplasmic
          vesicle, endoplasmic reticulum, ER-golgi transport,
          membrane, mRNA transport; 4.00A {Saccharomyces
          cerevisiae} (A:483-570)
          Length = 88

 Score = 23.9 bits (52), Expect = 8.6
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 3  FKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELY 50
           ++K   L+VL++ LGS            L ++      I +   ++Y
Sbjct: 28 IESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIY 75


>1zbs_A Hypothetical protein PG1100; alpha-beta protein.,
          structural genomics, PSI, protein structure initiative;
          2.30A {Porphyromonas gingivalis W83}
          (A:1-107,A:270-291)
          Length = 129

 Score = 23.6 bits (51), Expect = 8.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 42 IRELQKELYPAISTLAHRMDKLHF 65
             L+ E+ PAI   A  +  ++F
Sbjct: 42 DTALRSEVLPAIGQKASSIRAVYF 65


>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat,
          autocatalytic cleavage, mRNA transport, nuclear pore
          complex, nucleus, phosphoprotein; 3.00A {Saccharomyces
          cerevisiae} PDB: 3bg0_B (B:166-261)
          Length = 96

 Score = 23.5 bits (51), Expect = 9.3
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 3  FKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELY 50
           ++K   L+VL++ LGS            L ++      I +   ++Y
Sbjct: 36 IESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIY 83


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 666,170
Number of extensions: 25876
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 16
Length of query: 97
Length of database: 4,956,049
Length adjustment: 57
Effective length of query: 40
Effective length of database: 3,029,164
Effective search space: 121166560
Effective search space used: 121166560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)