RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780221|ref|YP_003064634.1| hypothetical protein
CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>1xr4_A Putative citrate lyase alpha chain/citrate-ACP transferase; the
           midwest center for structural genomics, MCSG, structural
           genomics; 2.37A {Salmonella typhimurium LT2} SCOP:
           c.124.1.2 c.124.1.2
          Length = 509

 Score = 29.5 bits (66), Expect = 0.17
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 12  VLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRMDKLHFESDALD 71
           VLVT  G   +    +L   L       + I +LQ+               + F    + 
Sbjct: 436 VLVTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLTGK-PQ---PIEFTDRVVA 491

Query: 72  PILRRMDGPVKHVERRI 88
            +  R DG V  V R++
Sbjct: 492 VVRYR-DGSVIDVIRQV 507


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.8 bits (64), Expect = 0.29
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 19/72 (26%)

Query: 9   ILAVLVT------LLGSCADDRITELNTLLAEYKEEN----LKIRELQKELYPAISTLAH 58
           +L + +T      L G+       +++ L A+  +EN    +K +EL K    A      
Sbjct: 83  VLNLCLTEFENCYLEGN-------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135

Query: 59  RMDKLHFESDAL 70
             DK    S AL
Sbjct: 136 PFDKKS-NS-AL 145


>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural
          genomics, PSI-2, protein structure initiative; HET:
          MSE; 2.00A {Shigella flexneri 2a str}
          Length = 144

 Score = 25.3 bits (54), Expect = 3.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 38 ENLKIRELQKELYPAISTLAHRMDKLHFESDALDPILRRMDGPVKHV 84
            ++IR  ++E +  + TL  R D L   +D    I R+M+  V   
Sbjct: 2  NAMEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLF 48


>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1,
           protein of unknown function with cystatin- like fold;
           HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
          Length = 156

 Score = 25.1 bits (54), Expect = 3.6
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 21  ADDRITELNTLLAEYKEENLKIREL 45
           A   I E+    A  + E +   EL
Sbjct: 113 ASGLIREIRAFYASPQAEGIARLEL 137


>1uap_A Procollagen C-proteinase enhancer protein; beta barrel, protein
          binding; NMR {Homo sapiens} SCOP: b.40.3.3
          Length = 154

 Score = 24.6 bits (53), Expect = 5.1
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 2  RFKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELY 50
           F    L++   V  +     + +    +L+  YK   L +        
Sbjct: 43 NFCASSLVVTATVKSMVREPGEGLAVTVSLIGAYKTGGLDLPSPPTGAS 91


>1de4_C Transferrin receptor, hemochromatosis protein; HFE, hereditary
           hemochromatosis, MHC class I; HET: NAG; 2.80A {Homo
           sapiens} SCOP: a.48.2.1 c.8.4.1 c.56.5.5 PDB: 1cx8_A*
           1suv_A 2nsu_A
          Length = 640

 Score = 24.4 bits (52), Expect = 6.7
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 25  ITELNTLLAEYKEENLKIRELQKELYPAISTLAHRMDKLHFESDALDPILRRMDGPVKHV 84
           + +LN   A+ KE  L ++ L      A         +L  +    +   R +       
Sbjct: 502 VRDLNQYRADIKEMGLSLQWLYS----ARGDFFRATSRLTTDFGNAEKTDRFVM------ 551

Query: 85  ERRINSKTTTLEQ 97
            +++N +   +E 
Sbjct: 552 -KKLNDRVMRVEY 563


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 23.7 bits (50), Expect = 8.9
 Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 23  DRITELNTLLAEYKEENLK-IREL 45
           DR+T+    + +++EE  K ++EL
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQEL 101


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 757,230
Number of extensions: 30185
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 31
Length of query: 97
Length of database: 5,693,230
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,165,858
Effective search space: 141639172
Effective search space used: 141639172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)