HHsearch alignment for GI: 254780222 and conserved domain: COG1389
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair].
Probab=99.19 E-value=1.4e-10 Score=91.95 Aligned_cols=317 Identities=20% Similarity=0.252 Sum_probs=187.4
Q ss_pred EEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC---C-CEEEEEECCCCCCCCCCCC
Q ss_conf 02311210343269815467775502202443666678777-61899769999828---9-8399996698434441766
Q gi|254780222|r 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG---N-GFLTVVDNGRGIPVENHPK 123 (686)
Q Consensus 49 i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~---d-g~IsV~ddGrGIPv~~h~k 123 (686)
T Consensus 12 ~re~SvAEFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IP- 90 (538)
T COG1389 12 FRELSVAEFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIP- 90 (538)
T ss_pred HHHCCHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHH-
T ss_conf 3326999998748886189973068999999998531656876088876599998547755899993489999856757-
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEE-----EEEEEECC--CEEEEEEEECCCEECCCEEC
Q ss_conf 578701234545200247777774156314453889876203212-----69999418--83899997279451131121
Q gi|254780222|r 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE-----LHVTVARQ--NTIFSQKFSRGIPLSPLEKK 196 (686)
Q Consensus 124 ~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~-----f~Vev~r~--gk~y~q~f~~g~~~~~~~~i 196 (686)
T Consensus 91 --------kvFGk~LygSKfh~~--~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv 160 (538)
T COG1389 91 --------KVFGKMLYGSKFHRN--IQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIV 160 (538)
T ss_pred --------HHHHHHHCCCHHHHH--HHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHE
T ss_conf --------899888602323234--4325532424789999987517986699953788862489999951788876200
Q ss_pred -----CCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------CCCCCCEEEEE
Q ss_conf -----676778853999998424320012222899999888875305773599951645322-------24554112343
Q gi|254780222|r 197 -----EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------KYGIPEKEEFY 264 (686)
Q Consensus 197 -----~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~-------~~~~~~~~~f~ 264 (686)
T Consensus 161 ~r~~~~~~~~~hGT~Vel~~~~~~~~-~~---~qgi~eYlkrTaiinPhA~I~l~dPdG~~~vf~r~t~~lP~pP~E~kP 236 (538)
T COG1389 161 ERGEVENPGGWHGTRVELELKGVWYR-AK---RQGIYEYLKRTAIINPHARIVLKDPDGNLVVFPRSTDKLPKPPKEIKP 236 (538)
T ss_pred ECCCCCCCCCCCCEEEEEEECCCCHH-HC---CCCHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHHCCCCCCCCCC
T ss_conf 00222478887750799995553054-22---247999998875338741799988998678713314117999300489
Q ss_pred ECCCC---------------------------------HHHHHCCCCC--------------------------------
Q ss_conf 15861---------------------------------2221002467--------------------------------
Q gi|254780222|r 265 FPGGL---------------------------------KTYLQTKLEN-------------------------------- 279 (686)
Q Consensus 265 ~~~Gi---------------------------------~dyv~~~~~~-------------------------------- 279 (686)
T Consensus 237 HP~gvd~~~L~~M~~~T~~~tv~~fL~sef~rig~~ta~e~~e~~g~~~~~~p~~L~~~~~~eea~~lv~a~~~~~fm~P 316 (538)
T COG1389 237 HPHGVDLDTLKKMAHRTRRSTVREFLVSEFSRIGEKTADELLEYAGFDPDKKPRELTKKKTREEAEKLVEAFKKMKFMAP 316 (538)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 97645788999999875343599999999877626679999998467965487886034578999999999985866589
Q ss_pred -----------------CCCCCCCCEEEEEEE----CCCEEEEEEEEEEECCC---C--CCEEEEEEECCCC-CCCEEEC
Q ss_conf -----------------766677520333321----48015589998541467---7--7427888300065-5752413
Q gi|254780222|r 280 -----------------RSLISSEIFTGKTEK----KGTHRGTVEWAIAWCEE---N--PEITSYCNTILTD-EGGTHES 332 (686)
Q Consensus 280 -----------------~~~~~~~~~~~~~~~----~~~~~~~veval~~~~~---~--~~~~SFVN~I~T~-~GGTHv~ 332 (686)
T Consensus 317 ptd~LsPIGee~ie~gLk~~~~pe-fv~avTRkPkvy~G~pFiVEvgiAYGG~i~~~e~~~llRyANrvPLlyd~g~--- 392 (538)
T COG1389 317 PTDGLSPIGEELIEKGLKSILNPE-FVAAVTRKPKVYRGHPFIVEVGIAYGGNIPGGEKPLLLRYANRVPLLYDAGS--- 392 (538)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCH-HEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCC---
T ss_conf 854548455999999998751814-3043125850017986599987511688787752466643045764651576---
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCC-CHHHCC
Q ss_conf 04678999999876301883322233222236426999977634560764466202-523200
Q gi|254780222|r 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV-SLDAQR 394 (686)
Q Consensus 333 g~~~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~-s~~~~~ 394 (686)
T Consensus 393 ---cv~tk~V~si~-W--krY--gl~~~~--aplvvlVhv~St~VPyts~gKqsIa~vpeIe~ 445 (538)
T COG1389 393 ---CVITKVVESID-W--KRY--GLDQPD--APLVVLVHVASTNVPYTSAGKQSIADVPEIEN 445 (538)
T ss_pred ---CHHHHHHHHCC-C--EEC--CCCCCC--CCEEEEEEECCCCCCCCCCCHHHCCCCHHHHH
T ss_conf ---04667644056-2--013--768999--86799998514688867754012036688999