HHsearch alignment for GI: 254780222 and conserved domain: COG3850
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=96.94 E-value=0.002 Score=42.79 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=17.8
Q ss_pred EEEEEEECCCCCCCCHHHC-------CCCCCEEEEEECCEECCHHH
Q ss_conf 0379973276764210010-------11222012211231314454
Q gi|254780222|r 463 GTELFIVEGDSAGGSAKQA-------RNRSNQAVLPLRGKILNVAS 501 (686)
Q Consensus 463 ~~eL~lvEGDSA~gsAk~g-------rdr~~qgi~PLRGKiLNv~~ 501 (686)
T Consensus 298 ~~~~di~~~d--~~~~~~~~~~~~l~~~g~~Lg~l~~-~~~l~~~d 340 (574)
T COG3850 298 AEQWDISEGD--QPSGLKWPQEDPLTQQGHLLGTLPW-QRSLPEDD 340 (574)
T ss_pred CCCCCEECCC--CCCCCCHHHHCCHHHHHHHHEEEEC-CCCCCCCH
T ss_conf 4674342488--8766301343306553046614103-68999813