HHsearch alignment for GI: 254780222 and conserved domain: PRK05644
>PRK05644 gyrB DNA gyrase subunit B; Validated.
Probab=100.00 E-value=0 Score=1757.68 Aligned_cols=633 Identities=44% Similarity=0.731 Sum_probs=602.1
Q ss_pred CCCCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 76312369756023112103432698154677755022024436666787776189976999982898399996698434
Q gi|254780222|r 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 (686)
Q Consensus 38 ~~~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIP 117 (686)
T Consensus 5 ~~~~~~Y~~~~I~vL~gle~VRkRPgMYiG~t~~~glhhlv~EvvDNsiDEa~aG~~~~I~V~i~~DgsitV~DnGRGIP 84 (725)
T PRK05644 5 EMMENEYDASSIKVLEGLEAVRKRPGMYIGDTGGRGLHHLVYEVVDNSIDEALAGYCDEIEVTIHADGSVSVTDNGRGIP 84 (725)
T ss_pred HHHHCCCCHHHCEECCCCHHHCCCCCCEECCCCCCCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 47566789644845037575505986465669998766889864214787986389967999996898299998997677
Q ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECC
Q ss_conf 44176657870123454520024777777415631445388987620321269999418838999972794511311216
Q gi|254780222|r 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 (686)
Q Consensus 118 v~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~ 197 (686)
T Consensus 85 vd~h~~-~~~~~~E~I~t~LhAGgKFd~~~YkvSGGLHGVGasvVNALS~~~~VeV~RdGk~y~q~f~~G~~~~~l~~ig 163 (725)
T PRK05644 85 VDIHPK-EGVSAAEVVMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEWLELTVRRDGKIHRQEFERGVPVAPLKVIG 163 (725)
T ss_pred CCCCCC-CCCCHHHHEECCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCEEEEEEEECCEEEEEEEECCCCCCCCEECC
T ss_conf 634577-7972261300003556689999635316888802032160547089999989999999972897588852467
Q ss_pred CCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCC
Q ss_conf 76778853999998424320012222899999888875305773599951645322245541123431586122210024
Q gi|254780222|r 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 (686)
Q Consensus 198 ~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~ 277 (686)
T Consensus 164 ~~-~k~GT~ItF~PD~~iF~~-~~fd~d~L~~RlrelA~Ln~GL~I~l~Der~-----~~~~~~~f~y~gGi~dyv~~l~ 236 (725)
T PRK05644 164 ET-DKTGTTVRFWPDPEIFTT-TEFDYETLAKRLRELAFLNSGVKITLTDERE-----GEGKEETFHYEGGIKSFVEYLN 236 (725)
T ss_pred CC-CCCCEEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCEEEEEECCCHHHHHHHHH
T ss_conf 88-889659999977566177-4408999999999997217984799864577-----8776148971476788898862
Q ss_pred CCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCC--CCC
Q ss_conf 6776667752033332148015589998541467774-2788830006557524130467899999987630188--332
Q gi|254780222|r 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354 (686)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~~--kk~ 354 (686)
T Consensus 237 ~~k~~l~~~~i~~~~e~~~---i~vEvAlqw~d~~~e~i~SFvN~I~T~eGGTHv~Gfr~aLtr~In~ya~~~~l~Kk~~ 313 (725)
T PRK05644 237 RNKTPLHPEIIYFEGEKDG---IGVEVAMQWNDSYSENVLCFTNNIPTRDGGTHLAGFRAALTRVINDYARKNGLLKKAK 313 (725)
T ss_pred CCCCCCCCCCEEEEEEECC---EEEEEEEEECCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5787678885589986478---0699999854776631455421435588981889999999999999999837543344
Q ss_pred CCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22332222364269999776345607644662025232000012101588999774013568899999999996545443
Q gi|254780222|r 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 (686)
Q Consensus 355 ~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k 434 (686)
T Consensus 314 ~~itgdDIregL~~vISvki~nPqFegQTKeKLgn~ev~~~V~~~v~e~l~~~l~~np~~ak~Ii~k~~~aa~aR~aa~k 393 (725)
T PRK05644 314 VNLTGDDVREGLTAVISVKVPDPQFEGQTKTKLGNSEVRPIVESLVNEALSEFLEENPNEAKIIVGKAIEAARAREAARK 393 (725)
T ss_pred CCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56656777603079999861698747731030158546788999999889999887979899999999999999999997
Q ss_pred HHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHH
Q ss_conf 3444-221100245653335677656554037997327676421001011222012211231314454108776322889
Q gi|254780222|r 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 (686)
Q Consensus 435 ~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei 513 (686)
T Consensus 394 are~~rrK~~~~~~~LPGKL~Dc~skd~~~~ELfiVEGDSAgGsAkqgRdr~~QAIlPLRGKiLNv~ka~~~ki~~N~EI 473 (725)
T PRK05644 394 ARELTRRKSALDSAGLPGKLADCQSKDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARFDKILSSEEI 473 (725)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHH
T ss_conf 68765202212357898755465568977767999825788863103356574688641672200200679888618799
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECC
Q ss_conf 99998825665433333465525189997798771468899999999870888633938993099699974897999378
Q gi|254780222|r 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 (686)
Q Consensus 514 ~~l~~~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~y~~~ 593 (686)
T Consensus 474 ~~li~alG~g~g~~fd~~~LRY~kIiIMTDADvDGsHIrtLLlTfF~r~m~~LIe~G~vYiAqPPLyki~~gk~~~Y~~~ 553 (725)
T PRK05644 474 GTLITALGTGIGRDFDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYLKD 553 (725)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCEEEEECC
T ss_conf 99999967788865771127747089997899876899999999999999999975938992596159852981488379
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q ss_conf 999999999877--------------------------------------------------------------------
Q gi|254780222|r 594 EEHKQKILEEFK-------------------------------------------------------------------- 605 (686)
Q Consensus 594 e~e~~~~~~~~~-------------------------------------------------------------------- 605 (686)
T Consensus 554 d~e~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (725)
T PRK05644 554 DRELDEYLIELALEGATLHAIAGEALEKLVKEYRAVRKVIDRLSRRYPRALLEALATNAERELFELRVERRTHVYVLDHD 633 (725)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 99999999973205625520460778999999999999998764304467888875211012232001211011224555
Q ss_pred ---------------HCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf ---------------41788607868506778898899886039400079999866410267989999998807981689
Q gi|254780222|r 606 ---------------KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 (686)
Q Consensus 606 ---------------~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~R 670 (686)
T Consensus 634 ~~~~~~~~~~~~~~~~~~~k~~~IqRyKGLGEMnp~qLweTTMdP~~R~L~~V~i~d----a~~ad~~f~~LMG~~v~~R 709 (725)
T PRK05644 634 EQPVSSFEEALDWLLAEGRKGLTIQRYKGLGEMNPEQLWETTMDPEVRRLLQVTIED----AIAADEIFTTLMGDEVEPR 709 (725)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEECHH----HHHHHHHHHHHCCCCCHHH
T ss_conf 312478899999999730578802227606766978998636583013599987023----9999999998659995688
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999997524677517
Q gi|254780222|r 671 FKFIQERASFIDDVG 685 (686)
Q Consensus 671 K~wi~~~~~~~~~ld 685 (686)
T Consensus 710 r~fI~~na~~v~~lD 724 (725)
T PRK05644 710 REFIEENALDVRNLD 724 (725)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999851303348