HHsearch results for GI: 254780222 and protein with PDBid: 2q2e_B
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=590.50 Aligned_cols=573 Identities=12% Similarity=0.002 Sum_probs=430.6
Q ss_pred CCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCC----EEEEEECCCCCCC
Q ss_conf 697560231121034326981546777550220244366667877-76189976999982898----3999966984344
Q gi|254780222|r 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE-VIAGYANLIEVSLDGNG----FLTVVDNGRGIPV 118 (686)
Q Consensus 44 Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe-~~~g~~~~I~V~i~~dg----~IsV~ddGrGIPv 118 (686)
|=|+....++..|--.+.+.|.-.||..+||||+++|+||||+|+ +.+|||+.|.|+|+.+| +|+|.|||||||+
T Consensus 8 ~~~~~~~~~~~~ef~~~~~~~l~~~~~~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~ 87 (621)
T 2q2e_B 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVR 87 (621)
T ss_dssp ---CCCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCH
T ss_conf 99852221789999997376745788621789989999971886897639998259999968996469999984899998
Q ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEE-----EEEEEE--CCCEEEEEEEECCCEEC
Q ss_conf 41766578701234545200247777774156314453889876203212-----699994--18838999972794511
Q gi|254780222|r 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE-----LHVTVA--RQNTIFSQKFSRGIPLS 191 (686)
Q Consensus 119 ~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~-----f~Vev~--r~gk~y~q~f~~g~~~~ 191 (686)
|.|+ .+||+||+||||+ .|+.+||+||||+++||++|.+ ++|.+. ++++.|.+.|..+....
T Consensus 88 d~~~---------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~~~~ 156 (621)
T 2q2e_B 88 EQIP---------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTN 156 (621)
T ss_dssp GGHH---------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSC
T ss_pred HHHH---------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCC
T ss_conf 9999---------9860846677876--6511799766567688887686428638999961798725999841566556
Q ss_pred CCEE-CCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 3112-167677885399999842432001222289999988887530577359995164532224554112343158612
Q gi|254780222|r 192 PLEK-KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 (686)
Q Consensus 192 ~~~~-i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~ 270 (686)
.... ...+...+++.++++||...|. ...+..+.|.+++++.|+++|++++.+.++... .+.++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~----------~~~~~~~-- 223 (621)
T 2q2e_B 157 EPDILVDEVRDWFRPHGTQIELEMRAA-YVKGRRQSIYEYLKATAIVNPHARITLIDPDGN----------EEVFERA-- 223 (621)
T ss_dssp SCCCCCEEECCCSCSSCCCEEEECSCC-CCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC----------CEEEECC--
T ss_pred CCCEEECCCCCCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----------EEEEECC--
T ss_conf 773110365566444047974022343-012268999999999985087856998648997----------0687345--
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCC-CEEEEEEECCCC-CCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 2210024677666775203333214801558999854146777-427888300065-57524130467899999987630
Q gi|254780222|r 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTD-EGGTHESGLRVALTRGIKKYAEL 348 (686)
Q Consensus 271 dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~-~~~SFVN~I~T~-~GGTHv~g~~~ai~k~i~~~~~~ 348 (686)
.+.++. . ..+|...+++... ++.+|++++.+. .+|+|..+|....++.++.++..
T Consensus 224 --~e~~~~-------~--------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (621)
T 2q2e_B 224 --TDKMPE-------P--------------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKA 280 (621)
T ss_dssp --CCCCCC-------C--------------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHT
T ss_pred --CCCCCC-------C--------------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf --545798-------6--------------61124088765289999998536777660168764020049999999976
Q ss_pred CCC---CCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 188---33222332222364269999776345607644662025232000012101588999774013568899999999
Q gi|254780222|r 349 TQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 (686)
Q Consensus 349 ~~~---kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~ 425 (686)
.+. .+...+.+++++.++.+++++.+++|++++|++ +.+...+..+...+...|..|+.+++..++.+.++....
T Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T 2q2e_B 281 AGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVG 358 (621)
T ss_dssp TTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
T ss_conf 588855472328999998466115766624896435786--677999999999999999999865977553278999999
Q ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHH
Q ss_conf 9965454433444-221100245653335677656554037997327676421001011222012211231314454108
Q gi|254780222|r 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 (686)
Q Consensus 426 a~~r~~~~k~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~ 504 (686)
.+.+.++.+.+.. .++...+...||++++||.+++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++..
T Consensus 359 ~~~~~~~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~ 438 (621)
T 2q2e_B 359 MAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAI 438 (621)
T ss_dssp EEESSSSCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSB
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHH
T ss_conf 99720543155156665442355554555555126511200445413465676776640101032443153778888730
Q ss_pred -HHHHCCHHHHHHHHHHCCCCC----CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCE
Q ss_conf -776322889999988256654----33333465525189997798771468899999-------999870888633938
Q gi|254780222|r 505 -EKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLT-------FFYQEMYDLIEQKHL 572 (686)
Q Consensus 505 -~ki~~N~Ei~~l~~~lGl~~g----~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~-------ff~~~~p~Li~~g~v 572 (686)
+.+.-+++|...+..+|.+++ +.++...+||.+++||+|+|.+|.||+.|+.+ +|+|+|+.|++.|++
T Consensus 439 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v 518 (621)
T 2q2e_B 439 ADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVI 518 (621)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 13788999999999999886502132256688888756766554157899999986141256789999985454004358
Q ss_pred EEECCCEEEEEECCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCH
Q ss_conf 99309969997489799937899999999987741788607868506778898899886039400079999866410267
Q gi|254780222|r 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 (686)
Q Consensus 573 ~~~~tPl~kv~~g~~~~y~~~e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~ 652 (686)
|+++||+|++.......+.+.+.. +.++.++ ........++.+|+++|+|+|+|+|||||++|++++|++.+..+..
T Consensus 519 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~ 595 (621)
T 2q2e_B 519 KNNGDGTVDVAIKVKNFGTSAYSF--RVHEMLP-CKVSGAKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEE 595 (621)
T ss_dssp CCSSSCCEEEEEEECC----CCCE--EECCEES-CCC---CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGS
T ss_pred EECCCCCCCEEEEEHHHHHHHHHH--HHHHHHH-HCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCC
T ss_conf 966688764578623132167659--9998523-1144320001334667887788773338677248999846702252
Q ss_pred HHHHHHHHHHCCCCHHHHH
Q ss_conf 9899999988079816899
Q gi|254780222|r 653 KDTQDSINKLMGTKADERF 671 (686)
Q Consensus 653 ~~~~~~f~~lmG~~~~~RK 671 (686)
...+..||++.+++|+
T Consensus 596 ---~~~~~~l~~~~v~~~~ 611 (621)
T 2q2e_B 596 ---LQKLPQLIVEGIEEEL 611 (621)
T ss_dssp ---CCCCCBBCC-------
T ss_pred ---HHHHHHHHHCCCCHHH
T ss_conf ---4442787748658656