HHsearch results for GI: 254780222 and protein with PDBid: 2zbk_B

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.00  E-value=4.7e-10  Score=86.79  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=94.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf             7775502202443666678777-61899769999828---98---39999669843444176657870123454520024
Q gi|254780222|r   68 GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG---NG---FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG  140 (686)
Q Consensus        68 st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~---dg---~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag  140 (686)
                      ++..++||+.+.|+|+||+|.. ..+++..|.|+|+.   ++   +|+|.|||.|||-+-         .+.+|+..+++
T Consensus        26 ~~~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~---------l~~~f~~f~~s   96 (530)
T 2zbk_B           26 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE---------VPNAFGRVLYS   96 (530)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGG---------SHHHHTSCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHH---------HHHHHHHHCCC
T ss_conf             854656999999999999988872589883599999834899578999996289899999---------99986420347


Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCC--EEEEEEEEC----CCEECC-CEECCCCCCCCCEEEE
Q ss_conf             77777741563144538898762032-----12699994188--389999727----945113-1121676778853999
Q gi|254780222|r  141 GKFDNSTYEISGGLHGVGISVVNALS-----DELHVTVARQN--TIFSQKFSR----GIPLSP-LEKKEKVRNKRGTRIT  208 (686)
Q Consensus       141 gnfdd~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~g--k~y~q~f~~----g~~~~~-~~~i~~~~~k~GT~It  208 (686)
                      ++.....+   .|..|+|.+.+..||     ....|++...+  ..|...+..    +.+... ...+........+.++
T Consensus        97 ~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (530)
T 2zbk_B           97 SKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVA  173 (530)
T ss_dssp             CCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEE
T ss_pred             CCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEEEE
T ss_conf             76453244---786544589999999980597599999458996489983344356676534578665035677731466


Q ss_pred             EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             998424320012222899999888875305773599951
Q gi|254780222|r  209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC  247 (686)
Q Consensus       209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~  247 (686)
                      -......+     .....+...++..+..++.+.+.+..
T Consensus       174 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (530)
T 2zbk_B          174 ISIPGDWP-----KAKSRIYEYIKRTYIITPYAEFIFKD  207 (530)
T ss_dssp             EEEECCHH-----HHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             EECCCHHH-----HHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             50000555-----55555899999876328886389973