HHsearch results for GI: 254780222 and protein with PDBid: 3k9f_C

>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C*
Probab=100.00  E-value=0  Score=669.80  Aligned_cols=238  Identities=42%  Similarity=0.709  Sum_probs=221.5

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             22110024565333567765655403799732767642100101122201221123131445410877632288999998
Q gi|254780222|r  439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ  518 (686)
Q Consensus       439 ~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~  518 (686)
                      +||++.+..+|||||+||+++++++|||||||||||+|+|+|||||++||||||||||||||+++.++|++|+||++|++
T Consensus        23 ~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~L~~  102 (268)
T 3k9f_C           23 HMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIY  102 (268)
T ss_dssp             -------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHHHHH
T ss_conf             33101335899852314478996654799977768751300326878789975388637354465989875888889998


Q ss_pred             HHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC----EEEEECCH
Q ss_conf             82566543333346552518999779877146889999999987088863393899309969997489----79993789
Q gi|254780222|r  519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDE  594 (686)
Q Consensus       519 ~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~----~~~y~~~e  594 (686)
                      ||||++|++||+++||||||||||||||||+||+||||||||+|||+||++||||+++||||+|++|+    +.+|++++
T Consensus       103 ~LGl~~g~~~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y~~~~  182 (268)
T 3k9f_C          103 TIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTD  182 (268)
T ss_dssp             HHCSCC--CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECSH
T ss_pred             HHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEEEECC
T ss_conf             74446788787433764548998279988588999999999997499702896689538708999368876326776502


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999877417886078685067788988998860394000799998664102679899999988079816899999
Q gi|254780222|r  595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI  674 (686)
Q Consensus       595 ~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi  674 (686)
                      .+++++.++.    ..+|+||||||||||+|+|+|||||||++|+|++|++++    ...++++|++|||++|++||+||
T Consensus       183 ~~~~~~~~~~----~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d----~~~~~~~~~~l~gk~~d~RK~wi  254 (268)
T 3k9f_C          183 GELEELRKQF----GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWI  254 (268)
T ss_dssp             HHHHHHHHHS----CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSC----SHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             CHHHHHHHHH----CCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCC----HHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             1458999971----888625757877879999999983595246899974474----78799999987599968999999


Q ss_pred             HHHHHH-HHHC
Q ss_conf             975246-7751
Q gi|254780222|r  675 QERASF-IDDV  684 (686)
Q Consensus       675 ~~~~~~-~~~l  684 (686)
                      ++|+.| +|++
T Consensus       255 ~~n~~~~~d~~  265 (268)
T 3k9f_C          255 EDNVKFTLEEA  265 (268)
T ss_dssp             HHHCCCC----
T ss_pred             HHHCCHHHHHH
T ss_conf             98343024443