HHsearch results for GI: 254780222 and protein with PDBid: 3k9f_C
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C*
Probab=100.00 E-value=0 Score=669.80 Aligned_cols=238 Identities=42% Similarity=0.709 Sum_probs=221.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 22110024565333567765655403799732767642100101122201221123131445410877632288999998
Q gi|254780222|r 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 (686)
Q Consensus 439 ~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~ 518 (686)
+||++.+..+|||||+||+++++++|||||||||||+|+|+|||||++||||||||||||||+++.++|++|+||++|++
T Consensus 23 ~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~L~~ 102 (268)
T 3k9f_C 23 HMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIY 102 (268)
T ss_dssp -------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHHHHH
T ss_conf 33101335899852314478996654799977768751300326878789975388637354465989875888889998
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC----EEEEECCH
Q ss_conf 82566543333346552518999779877146889999999987088863393899309969997489----79993789
Q gi|254780222|r 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDE 594 (686)
Q Consensus 519 ~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~----~~~y~~~e 594 (686)
||||++|++||+++||||||||||||||||+||+||||||||+|||+||++||||+++||||+|++|+ +.+|++++
T Consensus 103 ~LGl~~g~~~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y~~~~ 182 (268)
T 3k9f_C 103 TIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTD 182 (268)
T ss_dssp HHCSCC--CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECSH
T ss_pred HHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEEEECC
T ss_conf 74446788787433764548998279988588999999999997499702896689538708999368876326776502
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999877417886078685067788988998860394000799998664102679899999988079816899999
Q gi|254780222|r 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 (686)
Q Consensus 595 ~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi 674 (686)
.+++++.++. ..+|+||||||||||+|+|+|||||||++|+|++|++++ ...++++|++|||++|++||+||
T Consensus 183 ~~~~~~~~~~----~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d----~~~~~~~~~~l~gk~~d~RK~wi 254 (268)
T 3k9f_C 183 GELEELRKQF----GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWI 254 (268)
T ss_dssp HHHHHHHHHS----CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSC----SHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CHHHHHHHHH----CCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCC----HHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 1458999971----888625757877879999999983595246899974474----78799999987599968999999
Q ss_pred HHHHHH-HHHC
Q ss_conf 975246-7751
Q gi|254780222|r 675 QERASF-IDDV 684 (686)
Q Consensus 675 ~~~~~~-~~~l 684 (686)
++|+.| +|++
T Consensus 255 ~~n~~~~~d~~ 265 (268)
T 3k9f_C 255 EDNVKFTLEEA 265 (268)
T ss_dssp HHHCCCC----
T ss_pred HHHCCHHHHHH
T ss_conf 98343024443