PSIBLAST alignment of GI: 254780222 and protein with PDB id: 1kij
>gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390
>gi|21465845|pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 16/381 (4%)
Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
+YDAS+IR+L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I V L+
Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61
Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
+G LTV DNGRGIPV+ P+ K +E+I TLH+GGKF+ Y++SGGLHGVG SVV
Sbjct: 62 EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120
Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
NALS+ V V R+ FSRG PL + R K GTR+TF+PDP+IFG+
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179
Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
FD +++ + AYL +K + + E E F GG+ ++ + E
Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232
Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
L+ + F + VE + EI +Y N I T +GGTH + + A +R
Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289
Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
+ +YA+ ++ DDL+ ++SV + P+F GQTK KL++ +A V
Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349
Query: 399 ALRDPFDHYLVQNPIEATKLL 419
+ + L +NP A +
Sbjct: 350 VVYERLLEILEENPRIAKAVY 370