RPSBLAST alignment for GI: 254780222 and conserved domain: PLN03237

>gnl|CDD|178775 PLN03237, PLN03237, DNA topoisomerase 2; Provisional. Length = 1465
 Score =  119 bits (299), Expect = 3e-27
 Identities = 169/652 (25%), Positives = 264/652 (40%), Gaps = 118/652 (18%)

Query: 55  LEPVRMRPGMYIGGTDEKA---------------------LHHLFSEVIDNAMD-EVIAG 92
           LE + +RP  YIG  ++                       L+ +F E++ NA D +    
Sbjct: 38  LEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDP 97

Query: 93  YANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
             + + V +D     ++V +NG G+PVE H +       E+I   L     +D++  + +
Sbjct: 98  KMDSLRVVIDVEQNLISVYNNGDGVPVEIH-QEEGVYVPEMIFGHLLTSSNYDDNEKKTT 156

Query: 152 GGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNK-----RG 204
           GG +G G  + N  S E  +  A  ++   + Q FS  +     +K E V  K       
Sbjct: 157 GGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMG----KKSEPVITKCKKSENW 212

Query: 205 TRITFRPDPKIFG------------DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           T++TF+PD   F              K   D A  L  T  K  L+G+            
Sbjct: 213 TKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKT-VKVELNGK------------ 259

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--E 310
               IP K           Y+   LE+ +    E      EK         W +     E
Sbjct: 260 ---RIPVK-------SFSDYVDLYLESANKSRPENLPRIYEKVND-----RWEVCVSLSE 304

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI- 369
              +  S+ N+I T +GGTH       +T  I  +     NK+     + +  I A  + 
Sbjct: 305 GQFQQVSFVNSIATIKGGTHVD----YVTNQIANHVMEAVNKK-----NKNANIKAHNVK 355

Query: 370 --LSVF----IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
             L VF    I  P F  QTK  L    +    +  L + F   ++++ I    LL W  
Sbjct: 356 NHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVMKSGI-VENLLSWAD 414

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  + L++    +  R T I KL    +     +N    T L + EGDSA   A    +
Sbjct: 415 FKQSKELKKTDGAKTTRVTGIPKLEDANEAG--GKNSEKCT-LILTEGDSAKALAVAGLS 471

Query: 484 ---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVI 539
              R+   V PLRGK+LNV  A  ++I NN +I ++ Q LG +   QY   + LRY  ++
Sbjct: 472 VVGRNYYGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLM 531

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS--PPLFRITQGTKSV---YAHDE 594
           IMTD D DG+HI  LL+ F +     L++    FL+    P+ + T+  K V   Y+  E
Sbjct: 532 IMTDQDHDGSHIKGLLINFIHSFWPSLLKVPS-FLVEFITPIVKATRRGKKVLSFYSMPE 590

Query: 595 EHKQKILEEFKKHGKGKI---EISRFKGLGEMLASQLKE--TAMDANKRTLL 641
                  EE+K+   G      I  +KGLG   A + KE    +  +K+  +
Sbjct: 591 ------YEEWKESLGGNATGWSIKYYKGLGTSTAKEGKEYFKNLGKHKKDFV 636