RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1bjt
>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793
Score = 210 bits (534), Expect = 1e-54
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 15/239 (6%)
Query: 435 QREVNRKTAIRKLRLPG--KLADCSQNI---AHGTELFIVEGDSA-----GGSAKQARNR 484
+ + + RK R+ KL D ++ + L + EGDSA G A R+
Sbjct: 1 ENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDY 60
Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543
PLRGK+LNV A +++I N +I + + +G + R +Y + + LRY ++IMTD
Sbjct: 61 --YGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTD 118
Query: 544 ADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
D DG+HI L++ F L++ Q L P+ +++ + + +
Sbjct: 119 QDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEK 178
Query: 603 EFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
++ K + +KGLG LA +++E + ++ + + + D S
Sbjct: 179 WREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKK 237