RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1kij
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390
Score = 362 bits (929), Expect = e-100
Identities = 150/399 (37%), Positives = 217/399 (54%), Gaps = 16/399 (4%)
Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
YDAS+IR+L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I V L+
Sbjct: 3 YDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNE 62
Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
+G LTV DNGRGIPV+ P+ K +E+I TLH+GGKF+ Y++SGGLHGVG SVVN
Sbjct: 63 DGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 121
Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
ALS+ V V R+ FSRG PL + R K GTR+TF+PDP+IF F
Sbjct: 122 ALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIF-GNLRF 180
Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
D +++ + AYL +K + + ++E F GG+ ++ + E L
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQH-------GKEEVFLDKGGVASFAKALAEGEDL 233
Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
+ + F + VE + I +Y N I T +GGTH + + A +R
Sbjct: 234 LYEKPFLIRGTH---GEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRA 290
Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
+ +YA+ ++ DDL+ ++SV + P+F GQTK KL++ +A V
Sbjct: 291 LNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQV 350
Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
+ + L +NP A + E + ++ R RK RE+
Sbjct: 351 VYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389