RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1s16
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390
Score = 310 bits (794), Expect = 8e-85
Identities = 137/403 (33%), Positives = 204/403 (50%), Gaps = 17/403 (4%)
Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
+ Y+A +I +L GLEPVR RPGMY T +HL EVIDN++DE +AG+A ++V
Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58
Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS
Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK 219
VVNALS + V V R +++ F G + L+ + GT + F PD F D
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE-TFFDS 176
Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
F +RL + ++KA L V+ + + ++ + + GL YL +
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEI-------NNTEQRWCYQDGLNDYLAEAVNG 229
Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
+ + F G SY N I T +GGTH +GLR L
Sbjct: 230 LPTLPEKPFIGNFAGDTEAV-DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288
Query: 340 RGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V
Sbjct: 289 DAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348
Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
++D F +L QN A L E I ++ R+ R ++V RK
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRK 389