RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1s16

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390
 Score =  310 bits (794), Expect = 8e-85
 Identities = 137/403 (33%), Positives = 204/403 (50%), Gaps = 17/403 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   T     +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+       +  GT + F PD   F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE-TFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +           ++ + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEI-------NNTEQRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              +  + F G                          SY N I T +GGTH +GLR  L 
Sbjct: 230 LPTLPEKPFIGNFAGDTEAV-DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
            ++D F  +L QN   A  L E  I  ++ R+  R  ++V RK
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRK 389